File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample organism Biosample treatments Biosample treatments amount Biosample treatments duration Experiment target Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Platform Controlled by File Status Restricted Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF001KEN bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KEU 550253819 Bing Ren, UCSD 9e60b46ed347a05e37b771106cf9f774 https://www.encodeproject.org/files/ENCFF001KEN/@@download/ENCFF001KEN.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KEO bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEX 698241387 Bing Ren, UCSD d4f1095d804783460877fa313e2580f4 https://www.encodeproject.org/files/ENCFF001KEO/@@download/ENCFF001KEO.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KEP bigWig signal ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KEN, ENCFF001KEO 63289436 Bing Ren, UCSD aa7534c1b13652d484647b38a8040877 https://www.encodeproject.org/files/ENCFF001KEP/@@download/ENCFF001KEP.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KEU fastq reads ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 563187895 Bing Ren, UCSD ac2d7697c98b112b2ee81d2c6ffa0f0d https://www.encodeproject.org/files/ENCFF001KEU/@@download/ENCFF001KEU.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF001KEX fastq reads ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 758014146 Bing Ren, UCSD faebd15a459e28110035e9c09a097fc8 https://www.encodeproject.org/files/ENCFF001KEX/@@download/ENCFF001KEX.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF766YXO bam unfiltered alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KEU, ENCFF806TVZ 670549884 ENCODE Processing Pipeline e40f985f635ee37d674f065c1e8fae66 https://www.encodeproject.org/files/ENCFF766YXO/@@download/ENCFF766YXO.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF890WBX bam unfiltered alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEX, ENCFF806TVZ 888164348 ENCODE Processing Pipeline ab4eb43d968816e4bcd58f5bfac98a8a https://www.encodeproject.org/files/ENCFF890WBX/@@download/ENCFF890WBX.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF439WCI bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEX, ENCFF018NEO 585818092 ENCODE Processing Pipeline dc7f0fd0395bb74c8d10511940588fb4 https://www.encodeproject.org/files/ENCFF439WCI/@@download/ENCFF439WCI.bam mm10 released low read length, low read depth insufficient read depth ENCFF683TKC bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KEU, ENCFF018NEO 468270352 ENCODE Processing Pipeline 033f876d8caf2c4be6ea71c52402b271 https://www.encodeproject.org/files/ENCFF683TKC/@@download/ENCFF683TKC.bam mm10 released low read length, low read depth insufficient read depth ENCFF655VTV bam unfiltered alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KEU, ENCFF018NEO 670765884 ENCODE Processing Pipeline a42575377f42ff4154b585be632acafd https://www.encodeproject.org/files/ENCFF655VTV/@@download/ENCFF655VTV.bam mm10 released low read length, low read depth insufficient read depth ENCFF515HYK bam unfiltered alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEX, ENCFF018NEO 888793133 ENCODE Processing Pipeline 120289b2408d641f476ed0b99c0b6291 https://www.encodeproject.org/files/ENCFF515HYK/@@download/ENCFF515HYK.bam mm10 released low read length, low read depth insufficient read depth ENCFF749CPB bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KEU, ENCFF806TVZ 468474701 ENCODE Processing Pipeline a72cacb538cb79b573f177b19a382eb4 https://www.encodeproject.org/files/ENCFF749CPB/@@download/ENCFF749CPB.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF343KWM bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEX, ENCFF806TVZ 586089101 ENCODE Processing Pipeline 5540b240dc0e830a58a6ec44d47d941f https://www.encodeproject.org/files/ENCFF343KWM/@@download/ENCFF343KWM.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF589VTE fastq reads ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1168162437 Bing Ren, UCSD b40e56beff75175936c3da6b41b41dc2 SRA:SRR3652184 https://www.encodeproject.org/files/ENCFF589VTE/@@download/ENCFF589VTE.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released moderate library complexity, mild to moderate bottlenecking ENCFF898DBR fastq reads ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1329836863 Bing Ren, UCSD 3065e60b220e30847e3d502aae37b9b2 SRA:SRR3652185 https://www.encodeproject.org/files/ENCFF898DBR/@@download/ENCFF898DBR.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released moderate library complexity, mild to moderate bottlenecking ENCFF438XQQ bam alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF898DBR 1054410601 ENCODE Processing Pipeline 966593b769bb3dae66b206a352f176a6 https://www.encodeproject.org/files/ENCFF438XQQ/@@download/ENCFF438XQQ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF046YZK bam alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF589VTE, ENCFF806TVZ 1019815031 ENCODE Processing Pipeline 85329443abfc6cf3fa1c9f8cb9a759bd https://www.encodeproject.org/files/ENCFF046YZK/@@download/ENCFF046YZK.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF942VWA bed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF046YZK, ENCFF120NRT 604416 ENCODE Processing Pipeline c0e6cc64f290639d60cb831e054180fb https://www.encodeproject.org/files/ENCFF942VWA/@@download/ENCFF942VWA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF574IRP bed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF438XQQ 637029 ENCODE Processing Pipeline 30e2a8f89ac223ea59481aa13f8ecb0c https://www.encodeproject.org/files/ENCFF574IRP/@@download/ENCFF574IRP.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF021GEZ bigBed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF942VWA 1823067 ENCODE Processing Pipeline 61657f41b4cfe3025581ea1467d563a3 https://www.encodeproject.org/files/ENCFF021GEZ/@@download/ENCFF021GEZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF194YPD bed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046YZK, ENCFF120NRT, ENCFF171GAD, ENCFF438XQQ 698725 ENCODE Processing Pipeline 55d012c9977a36b7eba4c6e2cf095fc4 https://www.encodeproject.org/files/ENCFF194YPD/@@download/ENCFF194YPD.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF827BIZ bigBed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF574IRP 1930949 ENCODE Processing Pipeline 4dac13f32608c6fa7e906627e352bc66 https://www.encodeproject.org/files/ENCFF827BIZ/@@download/ENCFF827BIZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF984ABQ bigBed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF194YPD 1987780 ENCODE Processing Pipeline 5306856d4f6b498140b5b67b35358ba0 https://www.encodeproject.org/files/ENCFF984ABQ/@@download/ENCFF984ABQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF296MDU bigWig signal p-value ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF046YZK, ENCFF120NRT 572244008 ENCODE Processing Pipeline a6174aa5f8eedb02ace6efb1156a81ac https://www.encodeproject.org/files/ENCFF296MDU/@@download/ENCFF296MDU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF458MNL bigWig signal p-value ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF438XQQ 481066420 ENCODE Processing Pipeline 58c48c2027fea4e031206f5b71d18887 https://www.encodeproject.org/files/ENCFF458MNL/@@download/ENCFF458MNL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF115EBQ bigWig signal p-value ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046YZK, ENCFF120NRT, ENCFF171GAD, ENCFF438XQQ 910212724 ENCODE Processing Pipeline 9e54501b0f79624d13ebe679d37b0d14 https://www.encodeproject.org/files/ENCFF115EBQ/@@download/ENCFF115EBQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF834DSN bigWig fold change over control ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF046YZK, ENCFF120NRT 530335045 ENCODE Processing Pipeline d6917ce5a29720264a8bea1367f7dbbc https://www.encodeproject.org/files/ENCFF834DSN/@@download/ENCFF834DSN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF978OWT bigWig fold change over control ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF438XQQ 499741759 ENCODE Processing Pipeline ae2f5c58b604483668a7fda20abc3242 https://www.encodeproject.org/files/ENCFF978OWT/@@download/ENCFF978OWT.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF372DFP bigWig fold change over control ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046YZK, ENCFF120NRT, ENCFF171GAD, ENCFF438XQQ 1067397771 ENCODE Processing Pipeline 54f14a27b66a7fd1374e6c6c6ba4016a https://www.encodeproject.org/files/ENCFF372DFP/@@download/ENCFF372DFP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF656QEV bed narrowPeak replicated peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF194YPD, ENCFF574IRP, ENCFF942VWA 728023 ENCODE Processing Pipeline 3cf418f90b34def323cbe095ad387ab7 https://www.encodeproject.org/files/ENCFF656QEV/@@download/ENCFF656QEV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF625WPK bigBed narrowPeak replicated peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF656QEV 1647371 ENCODE Processing Pipeline 81ee25db327c40de65951a00ac910901 https://www.encodeproject.org/files/ENCFF625WPK/@@download/ENCFF625WPK.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF751CZS bam unfiltered alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF898DBR 1595830965 ENCODE Processing Pipeline e1e451fc431f1ce2d53b0e1ccc4ad385 https://www.encodeproject.org/files/ENCFF751CZS/@@download/ENCFF751CZS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF946QOG bam unfiltered alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF589VTE 1463010666 ENCODE Processing Pipeline 5b867befeb7e4edcbbc3dfd1e41482cd https://www.encodeproject.org/files/ENCFF946QOG/@@download/ENCFF946QOG.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF211WGC bam alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF589VTE 1019645119 ENCODE Processing Pipeline 1a6bdff7ec01b2fee8c2c4672fd8b9cb https://www.encodeproject.org/files/ENCFF211WGC/@@download/ENCFF211WGC.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF587PZE bam alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF898DBR 1054275598 ENCODE Processing Pipeline 079edd01995c18414952474cb5fccf6c https://www.encodeproject.org/files/ENCFF587PZE/@@download/ENCFF587PZE.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF574GAO bed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF211WGC, ENCFF865QGZ 605441 ENCODE Processing Pipeline 3ecb0553ed161cf5a46a6e481a8e8d23 https://www.encodeproject.org/files/ENCFF574GAO/@@download/ENCFF574GAO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF107TVF bed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF587PZE 636163 ENCODE Processing Pipeline afa01aa2edfd1a621185aea3c9da491f https://www.encodeproject.org/files/ENCFF107TVF/@@download/ENCFF107TVF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF112VMO bed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF211WGC, ENCFF438RYK, ENCFF587PZE, ENCFF865QGZ 716822 ENCODE Processing Pipeline 73744114081ad744be50a52daf53d58e https://www.encodeproject.org/files/ENCFF112VMO/@@download/ENCFF112VMO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF950DXQ bigBed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF574GAO 1825135 ENCODE Processing Pipeline 7ab34425aecc7e4572b7c59d72a702e7 https://www.encodeproject.org/files/ENCFF950DXQ/@@download/ENCFF950DXQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF504IPB bigBed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF107TVF 1931705 ENCODE Processing Pipeline eec287b5aa13979016279096a2202970 https://www.encodeproject.org/files/ENCFF504IPB/@@download/ENCFF504IPB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF064FBD bigBed narrowPeak peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF112VMO 2037677 ENCODE Processing Pipeline ee7fa3ec2d8aded9473dbc0c6775a36c https://www.encodeproject.org/files/ENCFF064FBD/@@download/ENCFF064FBD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF670CNM bigWig signal p-value ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF211WGC, ENCFF865QGZ 616152617 ENCODE Processing Pipeline ac018df5ab276d80ebde7517468d0232 https://www.encodeproject.org/files/ENCFF670CNM/@@download/ENCFF670CNM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF891OHZ bigWig signal p-value ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF587PZE 598687572 ENCODE Processing Pipeline d820c841b243418071957c938a4d5468 https://www.encodeproject.org/files/ENCFF891OHZ/@@download/ENCFF891OHZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF945QCL bigWig signal p-value ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF211WGC, ENCFF438RYK, ENCFF587PZE, ENCFF865QGZ 1086519615 ENCODE Processing Pipeline 32996ee799cd3846f3f659a38c581767 https://www.encodeproject.org/files/ENCFF945QCL/@@download/ENCFF945QCL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF878ZVN bigWig fold change over control ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF211WGC, ENCFF865QGZ 530494652 ENCODE Processing Pipeline 8f337b2095beec2cf68973af7cf1147f https://www.encodeproject.org/files/ENCFF878ZVN/@@download/ENCFF878ZVN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF032QKJ bigWig fold change over control ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF587PZE 488992695 ENCODE Processing Pipeline fa2f43e363e5e8ec198f93a8106b439a https://www.encodeproject.org/files/ENCFF032QKJ/@@download/ENCFF032QKJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF487TJN bigWig fold change over control ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF211WGC, ENCFF438RYK, ENCFF587PZE, ENCFF865QGZ 1082612792 ENCODE Processing Pipeline 120683dc6b50ac6d9a09a9df2805eb2f https://www.encodeproject.org/files/ENCFF487TJN/@@download/ENCFF487TJN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF459HSF bed narrowPeak replicated peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF107TVF, ENCFF112VMO, ENCFF574GAO 731936 ENCODE Processing Pipeline 8052736e37b03622a485a79d4930e5a9 https://www.encodeproject.org/files/ENCFF459HSF/@@download/ENCFF459HSF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF263WOX bigBed narrowPeak replicated peaks ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF459HSF 1655030 ENCODE Processing Pipeline 6b17c4fde2237d2ca164dd8add7f7c7a https://www.encodeproject.org/files/ENCFF263WOX/@@download/ENCFF263WOX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF930QZP fastq reads ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1763127936 Bing Ren, UCSD ea8643a62a64432814d336c20ebb3a75 SRA:SRR3651721 https://www.encodeproject.org/files/ENCFF930QZP/@@download/ENCFF930QZP.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released sequencing runs labeled as technical replicates ENCFF982ZXD fastq reads ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1845813890 Bing Ren, UCSD 1f74a68e987e23b7ca2601364b633c86 SRA:SRR3651720 https://www.encodeproject.org/files/ENCFF982ZXD/@@download/ENCFF982ZXD.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released sequencing runs labeled as technical replicates ENCFF940QAX fastq reads ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 231546586 Bing Ren, UCSD fe5335dfdb8755c70d7911f4a668d0b6 SRA:SRR3651722 https://www.encodeproject.org/files/ENCFF940QAX/@@download/ENCFF940QAX.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released sequencing runs labeled as technical replicates ENCFF695HQO bam alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF982ZXD 1924621209 ENCODE Processing Pipeline 55b7dd2a4e569d4ff6fd52e9ba3395b0 https://www.encodeproject.org/files/ENCFF695HQO/@@download/ENCFF695HQO.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF538WQO bam alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF930QZP, ENCFF940QAX 2063040624 ENCODE Processing Pipeline c62c63a90cd3cd69d6878ef949b49749 https://www.encodeproject.org/files/ENCFF538WQO/@@download/ENCFF538WQO.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF573FUF bed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF538WQO, ENCFF695HQO, ENCFF986JLW 3285393 ENCODE Processing Pipeline b449cb123683b05b8b9e7bca70632cf7 https://www.encodeproject.org/files/ENCFF573FUF/@@download/ENCFF573FUF.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF151OTS bigBed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF956KAG 5391015 ENCODE Processing Pipeline a8777dbfc3946a8e6a3fc65fbe30636e https://www.encodeproject.org/files/ENCFF151OTS/@@download/ENCFF151OTS.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF213THK bigBed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF573FUF 8799452 ENCODE Processing Pipeline 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ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF695HQO 2529010 ENCODE Processing Pipeline c0252d9a7a5eff7d118c7b0fe185b12b https://www.encodeproject.org/files/ENCFF956KAG/@@download/ENCFF956KAG.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF816DOF bigWig signal p-value ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF538WQO, ENCFF986JLW 872363011 ENCODE Processing Pipeline 70827494a6719f3125aa8feb1752c1e0 https://www.encodeproject.org/files/ENCFF816DOF/@@download/ENCFF816DOF.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF802PEG bigWig signal p-value ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF695HQO 758593952 ENCODE Processing Pipeline 5b9eebced4ae35dc88cd2ef8fc2bb20e https://www.encodeproject.org/files/ENCFF802PEG/@@download/ENCFF802PEG.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF674GMX bigWig signal p-value ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF538WQO, ENCFF695HQO, ENCFF986JLW 1472669080 ENCODE Processing Pipeline c0b971e7676fd830e6271432b7844f2d https://www.encodeproject.org/files/ENCFF674GMX/@@download/ENCFF674GMX.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF611WRF bigWig fold change over control ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF538WQO, ENCFF986JLW 1097802096 ENCODE Processing Pipeline 32c5917d1d5f3294954dd6e7f8c9be36 https://www.encodeproject.org/files/ENCFF611WRF/@@download/ENCFF611WRF.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF515TLV bigWig fold change over control ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF695HQO 879971950 ENCODE Processing Pipeline ea9070e1bbcf7ae0ecdcd0c568372cd7 https://www.encodeproject.org/files/ENCFF515TLV/@@download/ENCFF515TLV.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF544TGW bigWig fold change over control ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF538WQO, ENCFF695HQO, ENCFF986JLW 1589743402 ENCODE Processing Pipeline d3504c72e9f415d430e11d1e91b2226e https://www.encodeproject.org/files/ENCFF544TGW/@@download/ENCFF544TGW.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF243KTA bigBed narrowPeak replicated peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF852CLI 4583731 ENCODE Processing Pipeline 50683f768b0437744945cb7a64005e6d https://www.encodeproject.org/files/ENCFF243KTA/@@download/ENCFF243KTA.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF852CLI bed narrowPeak replicated peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF573FUF, ENCFF734HQD, ENCFF956KAG 2083426 ENCODE Processing Pipeline 2f05a3366fa27db24e801c18306e1f15 https://www.encodeproject.org/files/ENCFF852CLI/@@download/ENCFF852CLI.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF019XWG bam unfiltered alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF930QZP, ENCFF940QAX 2699918610 ENCODE Processing Pipeline 68798c5ab3c11dacd95f6c5c71cd59bb https://www.encodeproject.org/files/ENCFF019XWG/@@download/ENCFF019XWG.bam mm10 released sequencing runs labeled as technical replicates ENCFF763QPI bam unfiltered alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF982ZXD 2494815497 ENCODE Processing Pipeline 050fdfc070d1b6457215ea638f45318b https://www.encodeproject.org/files/ENCFF763QPI/@@download/ENCFF763QPI.bam mm10 released sequencing runs labeled as technical replicates ENCFF844PQK bam alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF982ZXD 1924219933 ENCODE Processing Pipeline f16309248d0ab1a616ef50cc44d8183f https://www.encodeproject.org/files/ENCFF844PQK/@@download/ENCFF844PQK.bam mm10 released sequencing runs labeled as technical replicates ENCFF148LKH bam alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF930QZP, ENCFF940QAX 2062607173 ENCODE Processing Pipeline 23c4e6e58def4008804ebbd71120e293 https://www.encodeproject.org/files/ENCFF148LKH/@@download/ENCFF148LKH.bam mm10 released sequencing runs labeled as technical replicates ENCFF294DKL bed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF148LKH, ENCFF614XRG, ENCFF970FNZ 2438067 ENCODE Processing Pipeline 4856b6a8d05c3753eb1eec55252c741c https://www.encodeproject.org/files/ENCFF294DKL/@@download/ENCFF294DKL.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF107EVZ bed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF614XRG, ENCFF844PQK 2528687 ENCODE Processing Pipeline 55d60173871a034bc6e601985a2b69e1 https://www.encodeproject.org/files/ENCFF107EVZ/@@download/ENCFF107EVZ.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF259DYA bigBed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF294DKL 5271799 ENCODE Processing Pipeline e0891e40726635936c5eefda09d3040b https://www.encodeproject.org/files/ENCFF259DYA/@@download/ENCFF259DYA.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF210OAH bed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF148LKH, ENCFF614XRG, ENCFF844PQK, ENCFF970FNZ 3255861 ENCODE Processing Pipeline 28fabe21cc1a151581415f832db1e987 https://www.encodeproject.org/files/ENCFF210OAH/@@download/ENCFF210OAH.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF359JOP bigBed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF107EVZ 5390515 ENCODE Processing Pipeline 5410d9d1f3c30a15ac5eb4c3fdff123a https://www.encodeproject.org/files/ENCFF359JOP/@@download/ENCFF359JOP.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF798FTY bigBed narrowPeak peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF210OAH 8708486 ENCODE Processing Pipeline e71278e05e03dd5e4fa1879cbc8d5f4c https://www.encodeproject.org/files/ENCFF798FTY/@@download/ENCFF798FTY.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF425EIK bigWig signal p-value ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF148LKH, ENCFF614XRG, ENCFF970FNZ 1097451350 ENCODE Processing Pipeline e28a1ccc404ed0b02df4861878ddec62 https://www.encodeproject.org/files/ENCFF425EIK/@@download/ENCFF425EIK.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF689OGI bigWig signal p-value ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF614XRG, ENCFF844PQK 738376774 ENCODE Processing Pipeline 0b4a319765083e5c488593b5d5144359 https://www.encodeproject.org/files/ENCFF689OGI/@@download/ENCFF689OGI.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF131SHB bigWig signal p-value ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF148LKH, ENCFF614XRG, ENCFF844PQK, ENCFF970FNZ 1474382961 ENCODE Processing Pipeline f684548cbb4d0b7c47bcd65ad3d310f8 https://www.encodeproject.org/files/ENCFF131SHB/@@download/ENCFF131SHB.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF349JTK bigWig fold change over control ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF148LKH, ENCFF614XRG, ENCFF970FNZ 1096994096 ENCODE Processing Pipeline 4f46037bdb3039e2102c7c8f4d31cce8 https://www.encodeproject.org/files/ENCFF349JTK/@@download/ENCFF349JTK.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF175TPF bigWig fold change over control ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF614XRG, ENCFF844PQK 880822242 ENCODE Processing Pipeline 5cc8a7492d558f8ec9adcde128801cf6 https://www.encodeproject.org/files/ENCFF175TPF/@@download/ENCFF175TPF.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF428RXK bigWig fold change over control ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF148LKH, ENCFF614XRG, ENCFF844PQK, ENCFF970FNZ 1561812753 ENCODE Processing Pipeline ebfcdafbf473083a937bdb17056faf92 https://www.encodeproject.org/files/ENCFF428RXK/@@download/ENCFF428RXK.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF994GGO bed narrowPeak replicated peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF107EVZ, ENCFF210OAH, ENCFF294DKL 2030778 ENCODE Processing Pipeline 2f2675ce2350611a5383679c58289335 https://www.encodeproject.org/files/ENCFF994GGO/@@download/ENCFF994GGO.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF201NJG bigBed narrowPeak replicated peaks ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF994GGO 4490410 ENCODE Processing Pipeline 8ae5ae82956afac5966ebec57b4f743b https://www.encodeproject.org/files/ENCFF201NJG/@@download/ENCFF201NJG.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF787PLN fastq reads ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1566323731 Bing Ren, UCSD 875729df5912fd5f08d70f24f2856167 SRA:SRR3653056 https://www.encodeproject.org/files/ENCFF787PLN/@@download/ENCFF787PLN.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/, /files/ENCFF751HMJ/ released mild to moderate bottlenecking ENCFF942SDR fastq reads ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1419971462 Bing Ren, UCSD 65b805c6bec5a81fb20411568cfcd672 SRA:SRR3653057 https://www.encodeproject.org/files/ENCFF942SDR/@@download/ENCFF942SDR.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/, /files/ENCFF884YRX/ released mild to moderate bottlenecking ENCFF724ERY bam alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF942SDR 1312728813 ENCODE Processing Pipeline c90d8478566cc0065e2e7a80c6908d94 https://www.encodeproject.org/files/ENCFF724ERY/@@download/ENCFF724ERY.bam mm10-minimal archived mild to moderate bottlenecking ENCFF629NXB bam alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF787PLN, ENCFF806TVZ 1346886680 ENCODE Processing Pipeline ebaf621bc97c1cf4355c7a3b62b70d6d https://www.encodeproject.org/files/ENCFF629NXB/@@download/ENCFF629NXB.bam mm10-minimal archived mild to moderate bottlenecking ENCFF313NRH bed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF629NXB, ENCFF724ERY, ENCFF980WPU 1779857 ENCODE Processing Pipeline ab5cfbcb2e34bc86f5d00e8e8182863e https://www.encodeproject.org/files/ENCFF313NRH/@@download/ENCFF313NRH.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF402LSO bigBed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF355PLY 3417807 ENCODE Processing Pipeline 6648a3afffe28a3b6a8dc2d488c46b28 https://www.encodeproject.org/files/ENCFF402LSO/@@download/ENCFF402LSO.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF355PLY bed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF724ERY, ENCFF980WPU 1454311 ENCODE Processing Pipeline f34554288eebcc380698c9189e1b5fcc https://www.encodeproject.org/files/ENCFF355PLY/@@download/ENCFF355PLY.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF507XMZ bigBed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF089PZD 3555164 ENCODE Processing Pipeline 88044c0f8ba0844a457a2888d2b4916b https://www.encodeproject.org/files/ENCFF507XMZ/@@download/ENCFF507XMZ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF886KOH bigWig signal p-value ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF629NXB 765919933 ENCODE Processing Pipeline a26dfab67c419958684f9f7fc91281c9 https://www.encodeproject.org/files/ENCFF886KOH/@@download/ENCFF886KOH.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF089PZD bed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF629NXB 1486769 ENCODE Processing Pipeline 7d13f60c2eadee3dd7445a5b38dd65e6 https://www.encodeproject.org/files/ENCFF089PZD/@@download/ENCFF089PZD.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF110XQX bigWig signal p-value ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF724ERY, ENCFF980WPU 730874904 ENCODE Processing Pipeline db06d3622deede9947e5f339fdad1094 https://www.encodeproject.org/files/ENCFF110XQX/@@download/ENCFF110XQX.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF045LKQ bigBed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF313NRH 5090933 ENCODE Processing Pipeline 3270d39525b3ba88eafc78a9216a52f3 https://www.encodeproject.org/files/ENCFF045LKQ/@@download/ENCFF045LKQ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF454KSE bigWig signal p-value ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF629NXB, ENCFF724ERY, ENCFF980WPU 1013790712 ENCODE Processing Pipeline da42eb017217d57fd65eeef75528054a https://www.encodeproject.org/files/ENCFF454KSE/@@download/ENCFF454KSE.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF367GLU bigWig fold change over control ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF629NXB 694843693 ENCODE Processing Pipeline a033b60b73fa6ad1944f46833a315ff3 https://www.encodeproject.org/files/ENCFF367GLU/@@download/ENCFF367GLU.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF094FTX bigWig fold change over control ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF724ERY, ENCFF980WPU 659021375 ENCODE Processing Pipeline 289297223e02b4a7bbfbacdfa35eef52 https://www.encodeproject.org/files/ENCFF094FTX/@@download/ENCFF094FTX.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF919UGN bigBed narrowPeak replicated peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF077LFV 2661521 ENCODE Processing Pipeline 32be3b8af28df7281d4cc4310906c262 https://www.encodeproject.org/files/ENCFF919UGN/@@download/ENCFF919UGN.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF751DPG bigWig fold change over control ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF629NXB, ENCFF724ERY, ENCFF980WPU 1211513442 ENCODE Processing Pipeline 17262fa0d19abb01778eaea873611238 https://www.encodeproject.org/files/ENCFF751DPG/@@download/ENCFF751DPG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF077LFV bed narrowPeak replicated peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF089PZD, ENCFF313NRH, ENCFF355PLY 1140201 ENCODE Processing Pipeline 8188db13a5509522260b1a968c389226 https://www.encodeproject.org/files/ENCFF077LFV/@@download/ENCFF077LFV.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF011NFM bam unfiltered alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF942SDR 1908023914 ENCODE Processing Pipeline 9dd1a5789f410917d7acc0074d748e97 https://www.encodeproject.org/files/ENCFF011NFM/@@download/ENCFF011NFM.bam mm10 released mild to moderate bottlenecking ENCFF394TZN bam unfiltered alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF787PLN 2066648867 ENCODE Processing Pipeline cdbbf43e7748c847a0c1be9d0aca791e https://www.encodeproject.org/files/ENCFF394TZN/@@download/ENCFF394TZN.bam mm10 released mild to moderate bottlenecking ENCFF435JOP bam alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF787PLN 1346590400 ENCODE Processing Pipeline 21241514d7fd9918b681d73f6393c28f https://www.encodeproject.org/files/ENCFF435JOP/@@download/ENCFF435JOP.bam mm10 released mild to moderate bottlenecking ENCFF866UAI bam alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF942SDR 1312431195 ENCODE Processing Pipeline db450bca59812ebadea28c649d4798df https://www.encodeproject.org/files/ENCFF866UAI/@@download/ENCFF866UAI.bam mm10 released mild to moderate bottlenecking ENCFF187PYO bed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF435JOP 1486805 ENCODE Processing Pipeline 9fb152368c18576131365024843d917c https://www.encodeproject.org/files/ENCFF187PYO/@@download/ENCFF187PYO.bed.gz mm10 released mild to moderate bottlenecking ENCFF275UKS bed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF609XDL, ENCFF866UAI 1454168 ENCODE Processing Pipeline 466f8853082c00c3b13f4e150cb0d28c https://www.encodeproject.org/files/ENCFF275UKS/@@download/ENCFF275UKS.bed.gz mm10 released mild to moderate bottlenecking ENCFF187HZY bed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF435JOP, ENCFF609XDL, ENCFF866UAI 1929175 ENCODE Processing Pipeline 1d025d0fdd5c80c54dd2e1fcc77a2929 https://www.encodeproject.org/files/ENCFF187HZY/@@download/ENCFF187HZY.bed.gz mm10 released mild to moderate bottlenecking ENCFF004WSC bigBed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF187PYO 3557022 ENCODE Processing Pipeline 02d2be8911ed8d4012b160e3074fe382 https://www.encodeproject.org/files/ENCFF004WSC/@@download/ENCFF004WSC.bigBed mm10 released mild to moderate bottlenecking ENCFF787YDX bigBed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF275UKS 3418705 ENCODE Processing Pipeline 399bc293002ea856ab22b311a529e9c7 https://www.encodeproject.org/files/ENCFF787YDX/@@download/ENCFF787YDX.bigBed mm10 released mild to moderate bottlenecking ENCFF582AYW bigBed narrowPeak peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF187HZY 5511696 ENCODE Processing Pipeline 6b4fce52d215df2f1b40281e5874e012 https://www.encodeproject.org/files/ENCFF582AYW/@@download/ENCFF582AYW.bigBed mm10 released mild to moderate bottlenecking ENCFF232ZLU bigWig signal p-value ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF435JOP 706987234 ENCODE Processing Pipeline e0f9762af16cf63f3bc65a0174201079 https://www.encodeproject.org/files/ENCFF232ZLU/@@download/ENCFF232ZLU.bigWig mm10 released mild to moderate bottlenecking ENCFF357BSR bigWig signal p-value ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF609XDL, ENCFF866UAI 682806242 ENCODE Processing Pipeline 27edbbf22a38e937609869e0769dfdd8 https://www.encodeproject.org/files/ENCFF357BSR/@@download/ENCFF357BSR.bigWig mm10 released mild to moderate bottlenecking ENCFF700MRS bigWig signal p-value ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF435JOP, ENCFF609XDL, ENCFF866UAI 1197090499 ENCODE Processing Pipeline d6ff152824372225afe79297b6bf0478 https://www.encodeproject.org/files/ENCFF700MRS/@@download/ENCFF700MRS.bigWig mm10 released mild to moderate bottlenecking ENCFF124LQO bigWig fold change over control ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF435JOP 699703259 ENCODE Processing Pipeline 4362673c49077f756e559664801585f6 https://www.encodeproject.org/files/ENCFF124LQO/@@download/ENCFF124LQO.bigWig mm10 released mild to moderate bottlenecking ENCFF957WMU bigWig fold change over control ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF609XDL, ENCFF866UAI 663915316 ENCODE Processing Pipeline 36821a053a0ff03674368fda562b25fb https://www.encodeproject.org/files/ENCFF957WMU/@@download/ENCFF957WMU.bigWig mm10 released mild to moderate bottlenecking ENCFF596BHZ bigWig fold change over control ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF435JOP, ENCFF609XDL, ENCFF866UAI 1248500942 ENCODE Processing Pipeline 46566138a3664708d374e73557d1b08a https://www.encodeproject.org/files/ENCFF596BHZ/@@download/ENCFF596BHZ.bigWig mm10 released mild to moderate bottlenecking ENCFF754NCW bed narrowPeak replicated peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF187HZY, ENCFF187PYO, ENCFF275UKS 1150035 ENCODE Processing Pipeline 8c4d19e2991ab60b44922ec0a3e39bc1 https://www.encodeproject.org/files/ENCFF754NCW/@@download/ENCFF754NCW.bed.gz mm10 released mild to moderate bottlenecking ENCFF169OZZ bigBed narrowPeak replicated peaks ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF754NCW 2683837 ENCODE Processing Pipeline b2b6db72ff107315a52f43723f8d4efa https://www.encodeproject.org/files/ENCFF169OZZ/@@download/ENCFF169OZZ.bigBed mm10 released mild to moderate bottlenecking ENCFF465MNR fastq reads ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2463893846 Bing Ren, UCSD f3b1869fa2741b8949076430934a1c31 SRA:SRR3651180 https://www.encodeproject.org/files/ENCFF465MNR/@@download/ENCFF465MNR.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released ENCFF152LBP fastq reads ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2616650106 Bing Ren, UCSD 98995ff5cd362576e0bd7dda26f9d39b SRA:SRR3651181 https://www.encodeproject.org/files/ENCFF152LBP/@@download/ENCFF152LBP.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released ENCFF422UXO bam alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF152LBP, ENCFF806TVZ 2626153404 ENCODE Processing Pipeline 46fc30f62a7fadb6476f548b6a2d41aa https://www.encodeproject.org/files/ENCFF422UXO/@@download/ENCFF422UXO.bam mm10-minimal archived ENCFF969DHB bam alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF465MNR, ENCFF806TVZ 2541995508 ENCODE Processing Pipeline 8e0e1c85b27b3cfaeb57963e67d7302e https://www.encodeproject.org/files/ENCFF969DHB/@@download/ENCFF969DHB.bam mm10-minimal archived ENCFF048OHH bigWig fold change over control ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF422UXO, ENCFF581EXC 1156223569 ENCODE Processing Pipeline f96d658730ad867eee319ab0b465ca55 https://www.encodeproject.org/files/ENCFF048OHH/@@download/ENCFF048OHH.bigWig mm10-minimal archived ENCFF584QLY bigWig signal p-value ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF422UXO, ENCFF581EXC 906322161 ENCODE Processing Pipeline a843a7f3435bc060aabc42f0c87d521b https://www.encodeproject.org/files/ENCFF584QLY/@@download/ENCFF584QLY.bigWig mm10-minimal archived ENCFF281KJS bigWig signal p-value ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF422UXO, ENCFF581EXC, ENCFF969DHB 1510474690 ENCODE Processing Pipeline 7532388576912e6b8ea72a8d6b3f3dca https://www.encodeproject.org/files/ENCFF281KJS/@@download/ENCFF281KJS.bigWig mm10-minimal archived ENCFF672XEQ bed narrowPeak replicated peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF140BTG, ENCFF327UON, ENCFF835PGR 2651447 ENCODE Processing Pipeline 608bcb386fa3f8f57ee912b603a457be https://www.encodeproject.org/files/ENCFF672XEQ/@@download/ENCFF672XEQ.bed.gz mm10-minimal archived ENCFF138ZBA bigBed narrowPeak replicated peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF672XEQ 5734757 ENCODE Processing Pipeline b866884b56275fc45457ac872f335b61 https://www.encodeproject.org/files/ENCFF138ZBA/@@download/ENCFF138ZBA.bigBed mm10-minimal archived ENCFF112YZK bigWig signal p-value ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF969DHB 811438863 ENCODE Processing Pipeline 0a44c072d2193e6afdf6168799c45dba https://www.encodeproject.org/files/ENCFF112YZK/@@download/ENCFF112YZK.bigWig mm10-minimal archived ENCFF889PWO bigWig fold change over control ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF969DHB 933865404 ENCODE Processing Pipeline ca99dd265b27e30ab28f352b086aaeb1 https://www.encodeproject.org/files/ENCFF889PWO/@@download/ENCFF889PWO.bigWig mm10-minimal archived ENCFF327UON bed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF422UXO, ENCFF581EXC 3244463 ENCODE Processing Pipeline dde4be489be3205baf9735e740ce8646 https://www.encodeproject.org/files/ENCFF327UON/@@download/ENCFF327UON.bed.gz mm10-minimal archived ENCFF835PGR bed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF969DHB 2307611 ENCODE Processing Pipeline 7c4d19e61578a85a334dfd2c97da6db5 https://www.encodeproject.org/files/ENCFF835PGR/@@download/ENCFF835PGR.bed.gz mm10-minimal archived ENCFF140BTG bed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF422UXO, ENCFF581EXC, ENCFF969DHB 3090059 ENCODE Processing Pipeline 0acdecda51dcbdb7b11b496b1736de0d https://www.encodeproject.org/files/ENCFF140BTG/@@download/ENCFF140BTG.bed.gz mm10-minimal archived ENCFF372FSU bigBed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF327UON 6740151 ENCODE Processing Pipeline 303d224277040551aafd1bc07bc4923a https://www.encodeproject.org/files/ENCFF372FSU/@@download/ENCFF372FSU.bigBed mm10-minimal archived ENCFF712HTX bigBed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF835PGR 4944003 ENCODE Processing Pipeline 6ec9d28e883c9551d9395890060897a5 https://www.encodeproject.org/files/ENCFF712HTX/@@download/ENCFF712HTX.bigBed mm10-minimal archived ENCFF584CCI bigBed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF140BTG 8262053 ENCODE Processing Pipeline 34bb86d73b7c816a578120ba1977633d https://www.encodeproject.org/files/ENCFF584CCI/@@download/ENCFF584CCI.bigBed mm10-minimal archived ENCFF174NYI bigWig fold change over control ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF422UXO, ENCFF581EXC, ENCFF969DHB 1719391286 ENCODE Processing Pipeline 6137966d23917d3cd8c1056272b4af78 https://www.encodeproject.org/files/ENCFF174NYI/@@download/ENCFF174NYI.bigWig mm10-minimal archived ENCFF972ZFS bam unfiltered alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF152LBP 3467114030 ENCODE Processing Pipeline 29f31f82518ff15a9fc93683d01e9474 https://www.encodeproject.org/files/ENCFF972ZFS/@@download/ENCFF972ZFS.bam mm10 released ENCFF117PFP bam unfiltered alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF465MNR 3267543323 ENCODE Processing Pipeline f6b620331b457f696ebbe98d6e3100a9 https://www.encodeproject.org/files/ENCFF117PFP/@@download/ENCFF117PFP.bam mm10 released ENCFF160ZOI bam alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF152LBP 2625643345 ENCODE Processing Pipeline 036459f04680075744e186effc6e200d https://www.encodeproject.org/files/ENCFF160ZOI/@@download/ENCFF160ZOI.bam mm10 released ENCFF310PSZ bam alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF465MNR 2541530754 ENCODE Processing Pipeline 2e91d5cf67857bd8b970dca172b4880e https://www.encodeproject.org/files/ENCFF310PSZ/@@download/ENCFF310PSZ.bam mm10 released ENCFF194MKP bed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF160ZOI, ENCFF270SEO, ENCFF652BTE 3244576 ENCODE Processing Pipeline 1d263780497df2eed67309bf5743f3a7 https://www.encodeproject.org/files/ENCFF194MKP/@@download/ENCFF194MKP.bed.gz mm10 released ENCFF245SON bed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF310PSZ 2307395 ENCODE Processing Pipeline 02ea5b68a4b4ea956d46d6cb0f9ec9d2 https://www.encodeproject.org/files/ENCFF245SON/@@download/ENCFF245SON.bed.gz mm10 released ENCFF736UPI bed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF160ZOI, ENCFF270SEO, ENCFF310PSZ, ENCFF652BTE 3044559 ENCODE Processing Pipeline c5cc0910a7faf7de3540fa23495cd8ae https://www.encodeproject.org/files/ENCFF736UPI/@@download/ENCFF736UPI.bed.gz mm10 released ENCFF848FWC bigBed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF194MKP 6745870 ENCODE Processing Pipeline d6c2d9a77659bea6e7f6c6ec2df80a35 https://www.encodeproject.org/files/ENCFF848FWC/@@download/ENCFF848FWC.bigBed mm10 released ENCFF855IKO bigBed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF245SON 4945692 ENCODE Processing Pipeline 7d85ecffe7faf078d59dac92a34f4427 https://www.encodeproject.org/files/ENCFF855IKO/@@download/ENCFF855IKO.bigBed mm10 released ENCFF106HJS bigBed narrowPeak peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF736UPI 8133780 ENCODE Processing Pipeline 9dc5fe3c875a2faee640d6955fe79a88 https://www.encodeproject.org/files/ENCFF106HJS/@@download/ENCFF106HJS.bigBed mm10 released ENCFF389NRT bigWig signal p-value ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF160ZOI, ENCFF270SEO, ENCFF652BTE 1021109895 ENCODE Processing Pipeline 1d18026c8f4b11451bd27c8d2dbf7f87 https://www.encodeproject.org/files/ENCFF389NRT/@@download/ENCFF389NRT.bigWig mm10 released ENCFF953SMU bigWig signal p-value ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF310PSZ 811223243 ENCODE Processing Pipeline cf3bb4a68591c6cc884b9fe27eeeb884 https://www.encodeproject.org/files/ENCFF953SMU/@@download/ENCFF953SMU.bigWig mm10 released ENCFF490BKW bigWig signal p-value ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF160ZOI, ENCFF270SEO, ENCFF310PSZ, ENCFF652BTE 1485967228 ENCODE Processing Pipeline 935872491aa14ef454ad2172c73943a4 https://www.encodeproject.org/files/ENCFF490BKW/@@download/ENCFF490BKW.bigWig mm10 released ENCFF148NOJ bigWig fold change over control ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF160ZOI, ENCFF270SEO, ENCFF652BTE 1174254813 ENCODE Processing Pipeline 91fb7fe1c235d85269d61bf418dca851 https://www.encodeproject.org/files/ENCFF148NOJ/@@download/ENCFF148NOJ.bigWig mm10 released ENCFF951MWE bigWig fold change over control ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF310PSZ 931447774 ENCODE Processing Pipeline 36bef331b55c1f7af1090c0d6d913c7d https://www.encodeproject.org/files/ENCFF951MWE/@@download/ENCFF951MWE.bigWig mm10 released ENCFF774BPM bigWig fold change over control ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF160ZOI, ENCFF270SEO, ENCFF310PSZ, ENCFF652BTE 1698311277 ENCODE Processing Pipeline f1ddd658afe293de7076fc902f667716 https://www.encodeproject.org/files/ENCFF774BPM/@@download/ENCFF774BPM.bigWig mm10 released ENCFF631ZAN bed narrowPeak replicated peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF194MKP, ENCFF245SON, ENCFF736UPI 2656937 ENCODE Processing Pipeline db03cd8f5ce962986fba6245d490994b https://www.encodeproject.org/files/ENCFF631ZAN/@@download/ENCFF631ZAN.bed.gz mm10 released ENCFF385MWK bigBed narrowPeak replicated peaks ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF631ZAN 5722147 ENCODE Processing Pipeline 142d3660bbc4eca6ddc0f8eab1e4bf47 https://www.encodeproject.org/files/ENCFF385MWK/@@download/ENCFF385MWK.bigBed mm10 released ENCFF241ARU fastq reads ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2290689336 Bing Ren, UCSD 24d788d0fe6fcb26ea3fbcaf3a04e9c1 SRA:SRR3652648 https://www.encodeproject.org/files/ENCFF241ARU/@@download/ENCFF241ARU.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released moderate library complexity, mild to moderate bottlenecking ENCFF744UTH fastq reads ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2886943990 Bing Ren, UCSD 92424a302aaf18041cc2d223aac575f2 SRA:SRR3652647 https://www.encodeproject.org/files/ENCFF744UTH/@@download/ENCFF744UTH.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released moderate library complexity, mild to moderate bottlenecking ENCFF716WWK bam alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF744UTH, ENCFF806TVZ 2402333342 ENCODE Processing Pipeline b67ccf0f1109775f691a4611e03f4953 https://www.encodeproject.org/files/ENCFF716WWK/@@download/ENCFF716WWK.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF306FUM bam alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF241ARU, ENCFF806TVZ 2127846229 ENCODE Processing Pipeline 7b5d92bc495648cfa3e11a6ef571cdfc https://www.encodeproject.org/files/ENCFF306FUM/@@download/ENCFF306FUM.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF544KZR bed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF306FUM 1850595 ENCODE Processing Pipeline 41d6e245bdd1a21294ce9dc187d66ae5 https://www.encodeproject.org/files/ENCFF544KZR/@@download/ENCFF544KZR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF742BAT bigBed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF921HXV 6052385 ENCODE Processing Pipeline c2e6e042a0572c63f83aa19dd347d110 https://www.encodeproject.org/files/ENCFF742BAT/@@download/ENCFF742BAT.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF453IMZ bigBed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF486ZTG 7179745 ENCODE Processing Pipeline 1b18b4e36d02010c0bdd1f00351639a9 https://www.encodeproject.org/files/ENCFF453IMZ/@@download/ENCFF453IMZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF921HXV bed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF120NRT, ENCFF171GAD, ENCFF716WWK 2422532 ENCODE Processing Pipeline e34434d05abced23d56cca1582ee04cf https://www.encodeproject.org/files/ENCFF921HXV/@@download/ENCFF921HXV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF486ZTG bed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF306FUM, ENCFF716WWK 2931658 ENCODE Processing Pipeline ccd131644c23ab284ddaf7d81864af45 https://www.encodeproject.org/files/ENCFF486ZTG/@@download/ENCFF486ZTG.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF627VWZ bigBed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF544KZR 4910647 ENCODE Processing Pipeline 0f60a097d292ba47c69b2430dcfa5197 https://www.encodeproject.org/files/ENCFF627VWZ/@@download/ENCFF627VWZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF999LBH bigWig signal p-value ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF306FUM 873961770 ENCODE Processing Pipeline 9a0dcb77449657cc815281178a461dee https://www.encodeproject.org/files/ENCFF999LBH/@@download/ENCFF999LBH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF029RCH bigWig signal p-value ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF120NRT, ENCFF171GAD, ENCFF716WWK 1085810118 ENCODE Processing Pipeline 8ebf5a31a8d2155c89519d644ebe6191 https://www.encodeproject.org/files/ENCFF029RCH/@@download/ENCFF029RCH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF911JJL bigWig signal p-value ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF306FUM, ENCFF716WWK 1542748392 ENCODE Processing Pipeline 7b8b546ba9f2584bd9114a61c4564578 https://www.encodeproject.org/files/ENCFF911JJL/@@download/ENCFF911JJL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF005VDA bigWig fold change over control ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF306FUM 926600939 ENCODE Processing Pipeline 8da7648771f0a0e9536f192c2f639991 https://www.encodeproject.org/files/ENCFF005VDA/@@download/ENCFF005VDA.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF312SPV bigWig fold change over control ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF120NRT, ENCFF171GAD, ENCFF716WWK 1275938656 ENCODE Processing Pipeline 399f8b18abb6448d1f7205d993698591 https://www.encodeproject.org/files/ENCFF312SPV/@@download/ENCFF312SPV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF164BMD bigBed narrowPeak replicated peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF393DHD 3091839 ENCODE Processing Pipeline 758f61576b9ce41e41561b246c9dd4cf https://www.encodeproject.org/files/ENCFF164BMD/@@download/ENCFF164BMD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF502JLK bigWig fold change over control ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF306FUM, ENCFF716WWK 1721177454 ENCODE Processing Pipeline 732ae4e404c1adc6ee8f72463608b494 https://www.encodeproject.org/files/ENCFF502JLK/@@download/ENCFF502JLK.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF393DHD bed narrowPeak replicated peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF486ZTG, ENCFF544KZR, ENCFF921HXV 1650698 ENCODE Processing Pipeline 119272f553116aeaea7e677da6e2c153 https://www.encodeproject.org/files/ENCFF393DHD/@@download/ENCFF393DHD.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF344HTK bam unfiltered alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF744UTH 3600416049 ENCODE Processing Pipeline d73a67db950db5c4bcb7c2ce521a1e34 https://www.encodeproject.org/files/ENCFF344HTK/@@download/ENCFF344HTK.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF912BGP bam unfiltered alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF241ARU 2982086096 ENCODE Processing Pipeline 5ca3f2449ea6997decf4c36015d5d7c7 https://www.encodeproject.org/files/ENCFF912BGP/@@download/ENCFF912BGP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF811DWT bam alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF241ARU 2127407960 ENCODE Processing Pipeline a5b6b7584eda35fd2961cf1e9557870b https://www.encodeproject.org/files/ENCFF811DWT/@@download/ENCFF811DWT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF171KAM bam alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF744UTH 2401876875 ENCODE Processing Pipeline f9860281dfc5d098df284e151dc5758a https://www.encodeproject.org/files/ENCFF171KAM/@@download/ENCFF171KAM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF395RVX bed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF811DWT, ENCFF865QGZ 1679542 ENCODE Processing Pipeline b53fc8548b6de31d379d67e32438043c https://www.encodeproject.org/files/ENCFF395RVX/@@download/ENCFF395RVX.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF791XFF bed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171KAM, ENCFF438RYK, ENCFF865QGZ 2422746 ENCODE Processing Pipeline 1ee8a0514f9fcc831e67a32d85f5853e https://www.encodeproject.org/files/ENCFF791XFF/@@download/ENCFF791XFF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF408IWF bed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF171KAM, ENCFF438RYK, ENCFF811DWT, ENCFF865QGZ 2979683 ENCODE Processing Pipeline 8cb705a9ca18c51821a64e856075a00a https://www.encodeproject.org/files/ENCFF408IWF/@@download/ENCFF408IWF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF650VKJ bigBed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF395RVX 4446924 ENCODE Processing Pipeline a929268e91b653695b3270f4c527c0f8 https://www.encodeproject.org/files/ENCFF650VKJ/@@download/ENCFF650VKJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF181OGU bigBed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF791XFF 6052624 ENCODE Processing Pipeline c3c866b732aacffb8f401c05cd3f7398 https://www.encodeproject.org/files/ENCFF181OGU/@@download/ENCFF181OGU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF333ZUS bigBed narrowPeak peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF408IWF 7296901 ENCODE Processing Pipeline 5d6fb68c0a1d79c8bca16e0ff675e724 https://www.encodeproject.org/files/ENCFF333ZUS/@@download/ENCFF333ZUS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF401PTM bigWig signal p-value ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF811DWT, ENCFF865QGZ 739909806 ENCODE Processing Pipeline 18f0ac4e8b2eaf3e9a4440e02cc69af7 https://www.encodeproject.org/files/ENCFF401PTM/@@download/ENCFF401PTM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF047OQQ bigWig signal p-value ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171KAM, ENCFF438RYK, ENCFF865QGZ 1101978995 ENCODE Processing Pipeline bbf3a3854a03470c6d001c2e280314cd https://www.encodeproject.org/files/ENCFF047OQQ/@@download/ENCFF047OQQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF876TEY bigWig signal p-value ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF171KAM, ENCFF438RYK, ENCFF811DWT, ENCFF865QGZ 1345412658 ENCODE Processing Pipeline 01c93aaeaec55290c12dd4a747a343f0 https://www.encodeproject.org/files/ENCFF876TEY/@@download/ENCFF876TEY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF470BCC bigWig fold change over control ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF811DWT, ENCFF865QGZ 934963788 ENCODE Processing Pipeline d24933278e946915c36b6621ed8f2837 https://www.encodeproject.org/files/ENCFF470BCC/@@download/ENCFF470BCC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF877IBN bigWig fold change over control ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171KAM, ENCFF438RYK, ENCFF865QGZ 1278335246 ENCODE Processing Pipeline 6b37f731196172da93f7ac5b5f9a8237 https://www.encodeproject.org/files/ENCFF877IBN/@@download/ENCFF877IBN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF361SUJ bigWig fold change over control ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF171KAM, ENCFF438RYK, ENCFF811DWT, ENCFF865QGZ 1742721329 ENCODE Processing Pipeline 8c23d3097d33ec6e704ad73687aa935f https://www.encodeproject.org/files/ENCFF361SUJ/@@download/ENCFF361SUJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF900AWR bed narrowPeak replicated peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF395RVX, ENCFF408IWF, ENCFF791XFF 1673242 ENCODE Processing Pipeline c7cde8f6f4d8ae62ab1bf74120eeb4cc https://www.encodeproject.org/files/ENCFF900AWR/@@download/ENCFF900AWR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF297FDB bigBed narrowPeak replicated peaks ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF900AWR 3131799 ENCODE Processing Pipeline 06f59bf16a56461288683dbabf7c413f https://www.encodeproject.org/files/ENCFF297FDB/@@download/ENCFF297FDB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF002BGO fastq reads ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1136983388 Bing Ren, UCSD 058816ebcb32100a56715425516b273c SRA:SRR3653397 https://www.encodeproject.org/files/ENCFF002BGO/@@download/ENCFF002BGO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQL/ released low read length insufficient read depth, control insufficient read depth ENCFF002BGV fastq reads ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1173729951 Bing Ren, UCSD c7a93d433cbb6c39a7ebe47b73fbde1c SRA:SRR3653396 https://www.encodeproject.org/files/ENCFF002BGV/@@download/ENCFF002BGV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQO/ released low read length, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF403UNQ bam alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGO, ENCFF806TVZ 1105239693 ENCODE Processing Pipeline 61713fe44920d4900859ae2bff61cbca https://www.encodeproject.org/files/ENCFF403UNQ/@@download/ENCFF403UNQ.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF479QXF bam alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGV, ENCFF806TVZ 1115648253 ENCODE Processing Pipeline 069d1a56008ea8a850eff2f300a57279 https://www.encodeproject.org/files/ENCFF479QXF/@@download/ENCFF479QXF.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF876UOZ bed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF403UNQ, ENCFF786XLC 2194889 ENCODE Processing Pipeline c27c66da56e30c86d512ee3c56fde2cd https://www.encodeproject.org/files/ENCFF876UOZ/@@download/ENCFF876UOZ.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF247UZY bigBed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF876UOZ 4700000 ENCODE Processing Pipeline e71e60f1389791e6f30d1ce039b0ded6 https://www.encodeproject.org/files/ENCFF247UZY/@@download/ENCFF247UZY.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF646IDL bed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF479QXF, ENCFF786XLC 1415493 ENCODE Processing Pipeline ecdc1e7386f712178c33309e5cbc3ba2 https://www.encodeproject.org/files/ENCFF646IDL/@@download/ENCFF646IDL.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF991NQP bigBed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF646IDL 3283416 ENCODE Processing Pipeline 599ac76cd17a5999615df0612feb01d0 https://www.encodeproject.org/files/ENCFF991NQP/@@download/ENCFF991NQP.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF894DTQ bed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF403UNQ, ENCFF479QXF, ENCFF786XLC 1595734 ENCODE Processing Pipeline 9e0249db77afa24f7a6fc48cda0892d0 https://www.encodeproject.org/files/ENCFF894DTQ/@@download/ENCFF894DTQ.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF978OCC bigBed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF894DTQ 3543470 ENCODE Processing Pipeline 1a7cc93e4dd7b0477d9145151727a373 https://www.encodeproject.org/files/ENCFF978OCC/@@download/ENCFF978OCC.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF109BJK bigWig signal p-value ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF479QXF, ENCFF786XLC 502359998 ENCODE Processing Pipeline 9cca8c850ca07090f93ea598526d4bb7 https://www.encodeproject.org/files/ENCFF109BJK/@@download/ENCFF109BJK.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF465IKG bigWig signal p-value ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF403UNQ, ENCFF786XLC 444086393 ENCODE Processing Pipeline 429b8291a80247cfe632bf8c43a6f8fc https://www.encodeproject.org/files/ENCFF465IKG/@@download/ENCFF465IKG.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF421OMC bigWig signal p-value ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF403UNQ, ENCFF479QXF, ENCFF786XLC 635197669 ENCODE Processing Pipeline 4b5b022bc5778d83e2b7d335ff54c875 https://www.encodeproject.org/files/ENCFF421OMC/@@download/ENCFF421OMC.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF564EKL bigWig fold change over control ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF479QXF, ENCFF786XLC 500543879 ENCODE Processing Pipeline 9bb3cfaa447a78755361d0d414f3ff32 https://www.encodeproject.org/files/ENCFF564EKL/@@download/ENCFF564EKL.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF827TFO bigWig fold change over control ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF403UNQ, ENCFF786XLC 503521174 ENCODE Processing Pipeline e68086ee66c973a71caf168ef9e02d35 https://www.encodeproject.org/files/ENCFF827TFO/@@download/ENCFF827TFO.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF666AXT bigWig fold change over control ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF403UNQ, ENCFF479QXF, ENCFF786XLC 812858744 ENCODE Processing Pipeline 60491442236eb79852f56555cf750cfc https://www.encodeproject.org/files/ENCFF666AXT/@@download/ENCFF666AXT.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF973NRT bed narrowPeak replicated peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF646IDL, ENCFF876UOZ, ENCFF894DTQ 1259790 ENCODE Processing Pipeline 845783d3ac3ac44c06204535999d4889 https://www.encodeproject.org/files/ENCFF973NRT/@@download/ENCFF973NRT.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF314DLM bigBed narrowPeak replicated peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF973NRT 2479720 ENCODE Processing Pipeline 43fd927922131b150f3f8c20d51c816b https://www.encodeproject.org/files/ENCFF314DLM/@@download/ENCFF314DLM.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF184HRK bam unfiltered alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGV, ENCFF018NEO 1543668358 ENCODE Processing Pipeline 37db652c181ee4658a97209b94332bad https://www.encodeproject.org/files/ENCFF184HRK/@@download/ENCFF184HRK.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF612VFL bam unfiltered alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGO, ENCFF018NEO 1491017620 ENCODE Processing Pipeline 5cf2c02b687c391690982ab752d79867 https://www.encodeproject.org/files/ENCFF612VFL/@@download/ENCFF612VFL.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF652NJR bam alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGV, ENCFF018NEO 1115349119 ENCODE Processing Pipeline 1930eccd17cbcfd57b76b19f49e70cc6 https://www.encodeproject.org/files/ENCFF652NJR/@@download/ENCFF652NJR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF453MJN bam alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGO, ENCFF018NEO 1105016820 ENCODE Processing Pipeline 3418b5eea1f25b8c16a251b63e2108ea https://www.encodeproject.org/files/ENCFF453MJN/@@download/ENCFF453MJN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF289VSU bed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453MJN, ENCFF767URV 1289309 ENCODE Processing Pipeline afa72d5e98fb7e53c1d73a3ea4ac5fa1 https://www.encodeproject.org/files/ENCFF289VSU/@@download/ENCFF289VSU.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF617ZVR bed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF652NJR, ENCFF767URV 1490084 ENCODE Processing Pipeline c22094efde30b4fa37c30773292935c6 https://www.encodeproject.org/files/ENCFF617ZVR/@@download/ENCFF617ZVR.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF569WZE bigBed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF289VSU 2945405 ENCODE Processing Pipeline 61a02c295c734e08a7729d9b56623a24 https://www.encodeproject.org/files/ENCFF569WZE/@@download/ENCFF569WZE.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF720EXL bed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF424QZD, ENCFF453MJN, ENCFF652NJR, ENCFF767URV 1752012 ENCODE Processing Pipeline 81bef0c740dd254571fc7bc071011aee https://www.encodeproject.org/files/ENCFF720EXL/@@download/ENCFF720EXL.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF125PNH bigBed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF617ZVR 3439225 ENCODE Processing Pipeline 4b3af65d30368024132d91bfcc55bca5 https://www.encodeproject.org/files/ENCFF125PNH/@@download/ENCFF125PNH.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF745ZRF bigBed narrowPeak peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF720EXL 3828307 ENCODE Processing Pipeline 33a164c8c56f7388f75196f69c13eb3a https://www.encodeproject.org/files/ENCFF745ZRF/@@download/ENCFF745ZRF.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF406ESF bigWig signal p-value ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF652NJR, ENCFF767URV 466170448 ENCODE Processing Pipeline 5719a2ff4a7f2d03a6fb1764fb9afdc5 https://www.encodeproject.org/files/ENCFF406ESF/@@download/ENCFF406ESF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF825WHX bigWig signal p-value ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453MJN, ENCFF767URV 355869835 ENCODE Processing Pipeline 61c5de00b66138881f0a18babbfca9ed https://www.encodeproject.org/files/ENCFF825WHX/@@download/ENCFF825WHX.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF814GIQ bigWig signal p-value ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF424QZD, ENCFF453MJN, ENCFF652NJR, ENCFF767URV 618673974 ENCODE Processing Pipeline be93d502a03950ea9fc27a356d2fa8be https://www.encodeproject.org/files/ENCFF814GIQ/@@download/ENCFF814GIQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF504QDY bigWig fold change over control ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF652NJR, ENCFF767URV 534607964 ENCODE Processing Pipeline c9c29ffc9210f88bf2012eedd9d76943 https://www.encodeproject.org/files/ENCFF504QDY/@@download/ENCFF504QDY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF392HJU bigWig fold change over control ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453MJN, ENCFF767URV 417721254 ENCODE Processing Pipeline 94c7328799dc76cb5df371988fd6ee2b https://www.encodeproject.org/files/ENCFF392HJU/@@download/ENCFF392HJU.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF127DNN bigWig fold change over control ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF424QZD, ENCFF453MJN, ENCFF652NJR, ENCFF767URV 793245603 ENCODE Processing Pipeline 62a50a04175ce67d10032a82598aadc2 https://www.encodeproject.org/files/ENCFF127DNN/@@download/ENCFF127DNN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF772IER bed narrowPeak replicated peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF289VSU, ENCFF617ZVR, ENCFF720EXL 1184578 ENCODE Processing Pipeline a2c560daaf1031c8693b706607892f57 https://www.encodeproject.org/files/ENCFF772IER/@@download/ENCFF772IER.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF210QNX bigBed narrowPeak replicated peaks ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF772IER 2359581 ENCODE Processing Pipeline 620af149cbb49c4ee9fae1df5d53a573 https://www.encodeproject.org/files/ENCFF210QNX/@@download/ENCFF210QNX.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002ESM fastq reads ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 737487967 Bing Ren, UCSD 3f6c89beb4fa73ea08179ce946926183 SRA:SRR3651684 https://www.encodeproject.org/files/ENCFF002ESM/@@download/ENCFF002ESM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXQ/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESN fastq reads ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 702754493 Bing Ren, UCSD f98d3a8da49b3c2d8619875ceeb34ed2 SRA:SRR3651686 https://www.encodeproject.org/files/ENCFF002ESN/@@download/ENCFF002ESN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF758YTO fastq reads ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 319248959 Bing Ren, UCSD 3f2b8f97cc1f959a76ae840fb5269c05 SRA:SRR3651685 https://www.encodeproject.org/files/ENCFF758YTO/@@download/ENCFF758YTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXQ/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF718EPX fastq reads ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 356705409 Bing Ren, UCSD b7f0d860e783acd593d72ebac477596e SRA:SRR3651687 https://www.encodeproject.org/files/ENCFF718EPX/@@download/ENCFF718EPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF122FJW bam alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESM, ENCFF758YTO, ENCFF806TVZ 1101009747 ENCODE Processing Pipeline 1a150b014161a8bc9080650a003d0710 https://www.encodeproject.org/files/ENCFF122FJW/@@download/ENCFF122FJW.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF091WYZ bam alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESN, ENCFF718EPX, ENCFF806TVZ 1123653842 ENCODE Processing Pipeline 403fe09f6079c8a8137b7254dacd3704 https://www.encodeproject.org/files/ENCFF091WYZ/@@download/ENCFF091WYZ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF973PYI bed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF091WYZ, ENCFF122FJW, ENCFF126TZS, ENCFF731DCA 2733322 ENCODE Processing Pipeline baaebe5a09610f3fa8c58673e0aa30f5 https://www.encodeproject.org/files/ENCFF973PYI/@@download/ENCFF973PYI.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF922BMU bigBed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF134QRE 8175496 ENCODE Processing Pipeline c37071031767546c645378561d2dcaa7 https://www.encodeproject.org/files/ENCFF922BMU/@@download/ENCFF922BMU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF442XCR bed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF091WYZ, ENCFF126TZS, ENCFF731DCA 3481657 ENCODE Processing Pipeline cabab992f5b3e826bb5721858a8d9633 https://www.encodeproject.org/files/ENCFF442XCR/@@download/ENCFF442XCR.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF085TOI bigBed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF442XCR 9275666 ENCODE Processing Pipeline e73e3ac5b73f9476ef9cd8293b5d839d https://www.encodeproject.org/files/ENCFF085TOI/@@download/ENCFF085TOI.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF271JQM bigBed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF973PYI 7402070 ENCODE Processing Pipeline 474d4a901b904e58868c9f0184f21790 https://www.encodeproject.org/files/ENCFF271JQM/@@download/ENCFF271JQM.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF134QRE bed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF122FJW, ENCFF126TZS, ENCFF731DCA 3014697 ENCODE Processing Pipeline 5c5f88adfcde1f8657b490f3762e8c72 https://www.encodeproject.org/files/ENCFF134QRE/@@download/ENCFF134QRE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF123YKF bigWig signal p-value ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF122FJW, ENCFF126TZS, ENCFF731DCA 509756325 ENCODE Processing Pipeline 3146b982a4f1847dbf1848fbb3e4a20d https://www.encodeproject.org/files/ENCFF123YKF/@@download/ENCFF123YKF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF724WRE bigWig signal p-value ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF091WYZ, ENCFF126TZS, ENCFF731DCA 423626361 ENCODE Processing Pipeline f78fa54f7e2c53a5a6505c6d052830a3 https://www.encodeproject.org/files/ENCFF724WRE/@@download/ENCFF724WRE.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF599VOZ bigWig signal p-value ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF091WYZ, ENCFF122FJW, ENCFF126TZS, ENCFF731DCA 537837664 ENCODE Processing Pipeline 11d3845e98c0e7b5be3c9729d9895bff https://www.encodeproject.org/files/ENCFF599VOZ/@@download/ENCFF599VOZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF279DAQ bed narrowPeak replicated peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF134QRE, ENCFF442XCR, ENCFF973PYI 3088142 ENCODE Processing Pipeline 8496f2309e6fe47789bb8c5856be024b https://www.encodeproject.org/files/ENCFF279DAQ/@@download/ENCFF279DAQ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF855YZN bigWig fold change over control ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF091WYZ, ENCFF126TZS, ENCFF731DCA 474751864 ENCODE Processing Pipeline 3f2166875108dfe710ba0c1bb87c67e3 https://www.encodeproject.org/files/ENCFF855YZN/@@download/ENCFF855YZN.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF165FMI bigWig fold change over control ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF122FJW, ENCFF126TZS, ENCFF731DCA 477183752 ENCODE Processing Pipeline ac91a0f17e0613493d0c1d0c014f3d28 https://www.encodeproject.org/files/ENCFF165FMI/@@download/ENCFF165FMI.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF679KAR bigWig fold change over control ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF091WYZ, ENCFF122FJW, ENCFF126TZS, ENCFF731DCA 767073712 ENCODE Processing Pipeline 374e118a8a1fcff806e74e1512ad8b08 https://www.encodeproject.org/files/ENCFF679KAR/@@download/ENCFF679KAR.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF684KVZ bigBed narrowPeak replicated peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF279DAQ 6513832 ENCODE Processing Pipeline 187cdf15d695567cdafd5f69f354cab1 https://www.encodeproject.org/files/ENCFF684KVZ/@@download/ENCFF684KVZ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF951DYZ bam unfiltered alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESM, ENCFF018NEO, ENCFF758YTO 1297934657 ENCODE Processing Pipeline 0da0a4f44794d84b14e461a0ca328581 https://www.encodeproject.org/files/ENCFF951DYZ/@@download/ENCFF951DYZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF366IKA bam unfiltered alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESN, ENCFF018NEO, ENCFF718EPX 1284857495 ENCODE Processing Pipeline a83467bb5490d8d55d69a9bbb73f9a2e https://www.encodeproject.org/files/ENCFF366IKA/@@download/ENCFF366IKA.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF369UUS bam alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESN, ENCFF018NEO, ENCFF718EPX 1027175666 ENCODE Processing Pipeline 82ec7b5db2794a1a720a574213578beb https://www.encodeproject.org/files/ENCFF369UUS/@@download/ENCFF369UUS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF458WQW bam alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESM, ENCFF018NEO, ENCFF758YTO 1012695126 ENCODE Processing Pipeline 14008c2b49b701a638d666b327b414ad https://www.encodeproject.org/files/ENCFF458WQW/@@download/ENCFF458WQW.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF641ZDN bed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF369UUS, ENCFF461JUO 3477129 ENCODE Processing Pipeline bc2c9a53b4fe5f687b21c4ff9804b966 https://www.encodeproject.org/files/ENCFF641ZDN/@@download/ENCFF641ZDN.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF065XJJ bed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF458WQW 1697153 ENCODE Processing Pipeline 8839e9cb8f55f9cc4c21f29d2cb5080e https://www.encodeproject.org/files/ENCFF065XJJ/@@download/ENCFF065XJJ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF868FGC bed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF276TCT, ENCFF369UUS, ENCFF458WQW, ENCFF461JUO 2730385 ENCODE Processing Pipeline e54c0ea3d3a53ab8d8e419181cc2b9e2 https://www.encodeproject.org/files/ENCFF868FGC/@@download/ENCFF868FGC.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF791JXM bigBed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF641ZDN 9270762 ENCODE Processing Pipeline ce2f04ee3a9bdca21a20181619c0169e https://www.encodeproject.org/files/ENCFF791JXM/@@download/ENCFF791JXM.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF966XSZ bigBed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF065XJJ 3797774 ENCODE Processing Pipeline 3fc832f1e1d2ef788277a55f6461c7b8 https://www.encodeproject.org/files/ENCFF966XSZ/@@download/ENCFF966XSZ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF171TSA bigBed narrowPeak peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF868FGC 7395520 ENCODE Processing Pipeline 94c9e22c2ab022fbba782b4c3b25adaf https://www.encodeproject.org/files/ENCFF171TSA/@@download/ENCFF171TSA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF628BBD bigWig signal p-value ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF369UUS, ENCFF461JUO 430744300 ENCODE Processing Pipeline 0c97368b11684b573392a17af6fe17ce https://www.encodeproject.org/files/ENCFF628BBD/@@download/ENCFF628BBD.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF304MDC bigWig signal p-value ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF458WQW 262188739 ENCODE Processing Pipeline 7555499d7da2314430f19a69a53abf28 https://www.encodeproject.org/files/ENCFF304MDC/@@download/ENCFF304MDC.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF614LTE bigWig signal p-value ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF276TCT, ENCFF369UUS, ENCFF458WQW, ENCFF461JUO 534833017 ENCODE Processing Pipeline 859dd7bec0ea7cdf02263063847bd86c https://www.encodeproject.org/files/ENCFF614LTE/@@download/ENCFF614LTE.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF275NTY bigWig fold change over control ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF369UUS, ENCFF461JUO 470472014 ENCODE Processing Pipeline e4d92d5354e5125356ca17e89a99cc41 https://www.encodeproject.org/files/ENCFF275NTY/@@download/ENCFF275NTY.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF518UHF bigWig fold change over control ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF458WQW 366506023 ENCODE Processing Pipeline ed6099aef0812dc5aedcfe662d2a7382 https://www.encodeproject.org/files/ENCFF518UHF/@@download/ENCFF518UHF.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF746ONG bigWig fold change over control ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF276TCT, ENCFF369UUS, ENCFF458WQW, ENCFF461JUO 757105495 ENCODE Processing Pipeline 84b19ced9310e676cb6071df0e09d0af https://www.encodeproject.org/files/ENCFF746ONG/@@download/ENCFF746ONG.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF953VHG bed narrowPeak replicated peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF065XJJ, ENCFF641ZDN, ENCFF868FGC 2901316 ENCODE Processing Pipeline 16457654afcb3a0b2cf9c990f1957abc https://www.encodeproject.org/files/ENCFF953VHG/@@download/ENCFF953VHG.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF593NNL bigBed narrowPeak replicated peaks ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF953VHG 6169302 ENCODE Processing Pipeline eac3a4e1be07751ddf1670cc5327d35b https://www.encodeproject.org/files/ENCFF593NNL/@@download/ENCFF593NNL.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001KPK bam alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KPT 303575533 Bing Ren, UCSD c5a306e22b02cbfe5b70fc61fa187b4b https://www.encodeproject.org/files/ENCFF001KPK/@@download/ENCFF001KPK.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KPL bigBed broadPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYH 2101633 Bing Ren, UCSD 021249c403b25d327d79df653eb6542f https://www.encodeproject.org/files/ENCFF001KPL/@@download/ENCFF001KPL.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KPM bam alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KPV 365730469 Bing Ren, UCSD ac5c916a784a5abfd5200975a2817535 https://www.encodeproject.org/files/ENCFF001KPM/@@download/ENCFF001KPM.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KPN bigWig signal ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KPK, ENCFF001KPM 44795938 Bing Ren, UCSD e7f7ce7c97af9851b13d34a6369e2e2b https://www.encodeproject.org/files/ENCFF001KPN/@@download/ENCFF001KPN.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KPT fastq reads ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 280488524 Bing Ren, UCSD 8b7418008b2f2c2366b53f9b50ed6a60 https://www.encodeproject.org/files/ENCFF001KPT/@@download/ENCFF001KPT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length insufficient read depth, control insufficient read depth ENCFF001KPV fastq reads ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 340410441 Bing Ren, UCSD 15429fd306dcabc5090029f743001483 https://www.encodeproject.org/files/ENCFF001KPV/@@download/ENCFF001KPV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length insufficient read depth, control insufficient read depth ENCFF001XYH bed broadPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KPK, ENCFF001KPM 1159893 Bing Ren, UCSD dbde9e4e64452148f870b8cd693e1d17 https://www.encodeproject.org/files/ENCFF001XYH/@@download/ENCFF001XYH.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF114EYI bam unfiltered alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KPV, ENCFF018NEO 404556865 ENCODE Processing Pipeline 4663313db0a4de420ad02beb9e389d3a https://www.encodeproject.org/files/ENCFF114EYI/@@download/ENCFF114EYI.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF882RKC bam unfiltered alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KPT, ENCFF018NEO 335288926 ENCODE Processing Pipeline da722d42bf8ec6d1620336d3c2ba287d https://www.encodeproject.org/files/ENCFF882RKC/@@download/ENCFF882RKC.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF163YZP bam alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KPT, ENCFF018NEO 264501826 ENCODE Processing Pipeline 92a5400c524152f605f540ba1023eb19 https://www.encodeproject.org/files/ENCFF163YZP/@@download/ENCFF163YZP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF062IMN bam alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KPV, ENCFF018NEO 313805469 ENCODE Processing Pipeline 631451cf1819187098813480ff75f099 https://www.encodeproject.org/files/ENCFF062IMN/@@download/ENCFF062IMN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF070EQR bed narrowPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF062IMN, ENCFF342BIA, ENCFF780TFB 2261394 ENCODE Processing Pipeline 627f208959413b589648c9c74153f045 https://www.encodeproject.org/files/ENCFF070EQR/@@download/ENCFF070EQR.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF826GET bed narrowPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF163YZP, ENCFF342BIA 2019479 ENCODE Processing Pipeline a4bf354211e52d860a4be0bfa08d66a8 https://www.encodeproject.org/files/ENCFF826GET/@@download/ENCFF826GET.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF893PSI bed narrowPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF062IMN, ENCFF163YZP, ENCFF342BIA, ENCFF780TFB 2092564 ENCODE Processing Pipeline fc7d65bc741b26860e6d2c15afd44dce https://www.encodeproject.org/files/ENCFF893PSI/@@download/ENCFF893PSI.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF343MAB bigBed narrowPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF826GET 5595274 ENCODE Processing Pipeline 29092efd07af83361c3747baa03e396a https://www.encodeproject.org/files/ENCFF343MAB/@@download/ENCFF343MAB.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF091FRN bigBed narrowPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF893PSI 5690237 ENCODE Processing Pipeline 336632f971ffa5b057508ae90bd1d87c https://www.encodeproject.org/files/ENCFF091FRN/@@download/ENCFF091FRN.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF812MWV bigBed narrowPeak peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF070EQR 6190185 ENCODE Processing Pipeline 5e8f73d0a56f007c303b5a2437abfc57 https://www.encodeproject.org/files/ENCFF812MWV/@@download/ENCFF812MWV.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF640AJR bigWig signal p-value ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF163YZP, ENCFF342BIA 149948263 ENCODE Processing Pipeline 8c576952e65f34f21f05c429e0d9fb37 https://www.encodeproject.org/files/ENCFF640AJR/@@download/ENCFF640AJR.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF518GYF bigWig signal p-value ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF062IMN, ENCFF342BIA, ENCFF780TFB 233541316 ENCODE Processing Pipeline 320c5da31aea866fd6e703e72a4ca748 https://www.encodeproject.org/files/ENCFF518GYF/@@download/ENCFF518GYF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF354PPU bigWig fold change over control ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF163YZP, ENCFF342BIA 110965440 ENCODE Processing Pipeline d6088ebac9ce821c74be2a99d582186c https://www.encodeproject.org/files/ENCFF354PPU/@@download/ENCFF354PPU.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF636DHM bigWig signal p-value ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF062IMN, ENCFF163YZP, ENCFF342BIA, ENCFF780TFB 302208964 ENCODE Processing Pipeline 198ccede8b9f8a7ab801e7b6e30056f0 https://www.encodeproject.org/files/ENCFF636DHM/@@download/ENCFF636DHM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF712GHH bigWig fold change over control ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF062IMN, ENCFF342BIA, ENCFF780TFB 162345840 ENCODE Processing Pipeline 3bbd207802adc01df2f6c727cddf16bf https://www.encodeproject.org/files/ENCFF712GHH/@@download/ENCFF712GHH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF488XKH bigWig fold change over control ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF062IMN, ENCFF163YZP, ENCFF342BIA, ENCFF780TFB 257208568 ENCODE Processing Pipeline 4bc4535beb339a899994d77643e82838 https://www.encodeproject.org/files/ENCFF488XKH/@@download/ENCFF488XKH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF042CUV bigBed narrowPeak replicated peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF208RPK 4518315 ENCODE Processing Pipeline 76719132b92513727d9f2f5f1c93f1f0 https://www.encodeproject.org/files/ENCFF042CUV/@@download/ENCFF042CUV.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF208RPK bed narrowPeak replicated peaks ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF070EQR, ENCFF826GET, ENCFF893PSI 2227250 ENCODE Processing Pipeline bc87d66cd0e918c0d1037fac50271186 https://www.encodeproject.org/files/ENCFF208RPK/@@download/ENCFF208RPK.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002DSI fastq reads ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 50 paired-ended 1 ENCFF002DSM 1258225467 Bing Ren, UCSD f0ad1ac4d16896751472f52e1348f45c SRA:SRR3655899 https://www.encodeproject.org/files/ENCFF002DSI/@@download/ENCFF002DSI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQV/ released mixed run types, inconsistent control run_type sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSJ fastq reads ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 1442309876 Bing Ren, UCSD 50006322baa7016543886bc5e5c118b7 SRA:SRR3655900 https://www.encodeproject.org/files/ENCFF002DSJ/@@download/ENCFF002DSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQV/ released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSM fastq reads ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 50 paired-ended 2 ENCFF002DSI 1273951634 Bing Ren, UCSD af3cd3135fcf287957e3ec21db9bde3f SRA:SRR3655899 https://www.encodeproject.org/files/ENCFF002DSM/@@download/ENCFF002DSM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQV/ released mixed run types, inconsistent control run_type sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSQ fastq reads ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 4026623758 Bing Ren, UCSD ee8ba281851e95b996ee4d7f1b7c132f SRA:SRR3655901 https://www.encodeproject.org/files/ENCFF002DSQ/@@download/ENCFF002DSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQZ/ released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF625IYX bam alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002DSI, ENCFF002DSM 1584835314 J. Michael Cherry, Stanford 0de79804e987b24fae90509d6d9180b6 https://www.encodeproject.org/files/ENCFF625IYX/@@download/ENCFF625IYX.bam mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth missing analysis_step_run ENCFF670MJB bam alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002DSQ, ENCFF806TVZ 1341126947 ENCODE Processing Pipeline 75d5bd2e459f6165c180f88d4de7857f https://www.encodeproject.org/files/ENCFF670MJB/@@download/ENCFF670MJB.bam mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF181RKA bam alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002DSI, ENCFF002DSJ, ENCFF806TVZ 1463141556 ENCODE Processing Pipeline 093af6db3b713fe832527d5b0acbb575 https://www.encodeproject.org/files/ENCFF181RKA/@@download/ENCFF181RKA.bam mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF841LGK bigBed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF087KZO 927671 ENCODE Processing Pipeline 438a0efbee0c8fa8f354df0a82849721 https://www.encodeproject.org/files/ENCFF841LGK/@@download/ENCFF841LGK.bigBed mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF069SCH bigWig signal p-value ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF181RKA, ENCFF238GCZ, ENCFF670MJB, ENCFF967HVB 677664393 ENCODE Processing Pipeline 75defcb90d5dc2812c4bea2aec0f413e https://www.encodeproject.org/files/ENCFF069SCH/@@download/ENCFF069SCH.bigWig mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF368NBB bigBed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF986NYU 629990 ENCODE Processing Pipeline 4b4b2f5cb7887e4d38a60b7bad149dd9 https://www.encodeproject.org/files/ENCFF368NBB/@@download/ENCFF368NBB.bigBed mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF454NWS bigWig signal p-value ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF238GCZ, ENCFF670MJB 425222522 ENCODE Processing Pipeline da7dc6e6ef7466c6beb0e72fa0d05caa https://www.encodeproject.org/files/ENCFF454NWS/@@download/ENCFF454NWS.bigWig mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF585XCP bigWig fold change over control ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF238GCZ, ENCFF670MJB 454692426 ENCODE Processing Pipeline a18a13e1ce4fb824cf55514d478ce555 https://www.encodeproject.org/files/ENCFF585XCP/@@download/ENCFF585XCP.bigWig mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF132MHK bigWig signal p-value ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF181RKA, ENCFF238GCZ, ENCFF967HVB 554731370 ENCODE Processing Pipeline c08d675d78e2165d59ab0f9b80fc8631 https://www.encodeproject.org/files/ENCFF132MHK/@@download/ENCFF132MHK.bigWig mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF457EJK bigWig fold change over control ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF181RKA, ENCFF238GCZ, ENCFF967HVB 590964957 ENCODE Processing Pipeline 5d214042d7b084eed7d86f7e5ea479a3 https://www.encodeproject.org/files/ENCFF457EJK/@@download/ENCFF457EJK.bigWig mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF986NYU bed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF181RKA, ENCFF238GCZ, ENCFF670MJB, ENCFF967HVB 297653 ENCODE Processing Pipeline a631f9a362aeaedf2ecd2c2aa4c11eb3 https://www.encodeproject.org/files/ENCFF986NYU/@@download/ENCFF986NYU.bed.gz mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF429XSL bigBed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF206VTI 680942 ENCODE Processing Pipeline 0e9fc6237dd29099422511c1c6418680 https://www.encodeproject.org/files/ENCFF429XSL/@@download/ENCFF429XSL.bigBed mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF206VTI bed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF181RKA, ENCFF238GCZ, ENCFF967HVB 323005 ENCODE Processing Pipeline 47e75e821ddf787039cf0a48c23b82c8 https://www.encodeproject.org/files/ENCFF206VTI/@@download/ENCFF206VTI.bed.gz mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF869AYR bed narrowPeak replicated peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF087KZO, ENCFF206VTI, ENCFF986NYU 118081 ENCODE Processing Pipeline ba00e88572fd4fa1d6b29c8cec66ba99 https://www.encodeproject.org/files/ENCFF869AYR/@@download/ENCFF869AYR.bed.gz mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF087KZO bed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF238GCZ, ENCFF670MJB 480928 ENCODE Processing Pipeline 619da18e098f04170bff38df2693ca08 https://www.encodeproject.org/files/ENCFF087KZO/@@download/ENCFF087KZO.bed.gz mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF045OJU bigWig fold change over control ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF181RKA, ENCFF238GCZ, ENCFF670MJB, ENCFF967HVB 862922642 ENCODE Processing Pipeline 22837d264b45abe8bc65e3597c3f95b0 https://www.encodeproject.org/files/ENCFF045OJU/@@download/ENCFF045OJU.bigWig mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF204ALU bigBed narrowPeak replicated peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF869AYR 290893 ENCODE Processing Pipeline 08b59e88ba3a6c1b090ce16aa0cd8f13 https://www.encodeproject.org/files/ENCFF204ALU/@@download/ENCFF204ALU.bigBed mm10-minimal archived mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF003GWT bam unfiltered alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF002DSI, ENCFF002DSJ, ENCFF018NEO 2971331147 ENCODE Processing Pipeline a12e163e8f693f44353e91f7834354dc https://www.encodeproject.org/files/ENCFF003GWT/@@download/ENCFF003GWT.bam mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF612ELM bam unfiltered alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF002DSQ, ENCFF018NEO 3666786850 ENCODE Processing Pipeline 37ab638ec0b598ae3541d666e32645d8 https://www.encodeproject.org/files/ENCFF612ELM/@@download/ENCFF612ELM.bam mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF636CIJ bam alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF002DSQ, ENCFF018NEO 1340435308 ENCODE Processing Pipeline 6207cfcaaecb27e18333a2e9bad0b043 https://www.encodeproject.org/files/ENCFF636CIJ/@@download/ENCFF636CIJ.bam mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF296XDZ bam alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF002DSI, ENCFF002DSJ, ENCFF018NEO 1462437657 ENCODE Processing Pipeline a999d8acae9362a3839f679883b88df6 https://www.encodeproject.org/files/ENCFF296XDZ/@@download/ENCFF296XDZ.bam mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF873YKN bed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF331CEU, ENCFF636CIJ 411526 ENCODE Processing Pipeline a8bfb787ee1661a46923c531e66cc48e https://www.encodeproject.org/files/ENCFF873YKN/@@download/ENCFF873YKN.bed.gz mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF030BLV bed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF296XDZ, ENCFF331CEU, ENCFF508LNS 324527 ENCODE Processing Pipeline f5145dd1152ddac62613bba87fd6e051 https://www.encodeproject.org/files/ENCFF030BLV/@@download/ENCFF030BLV.bed.gz mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF764QTP bed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF296XDZ, ENCFF331CEU, ENCFF508LNS, ENCFF636CIJ 594672 ENCODE Processing Pipeline 1d5131779ebc20e0847c4530ceeba6f0 https://www.encodeproject.org/files/ENCFF764QTP/@@download/ENCFF764QTP.bed.gz mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF036GPA bigBed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF873YKN 844735 ENCODE Processing Pipeline d3fc0500f53f7675ce83b7f952143223 https://www.encodeproject.org/files/ENCFF036GPA/@@download/ENCFF036GPA.bigBed mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF914SRA bigBed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF030BLV 686200 ENCODE Processing Pipeline c5911d78dc2ba6cd9bb756ec579c0b44 https://www.encodeproject.org/files/ENCFF914SRA/@@download/ENCFF914SRA.bigBed mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF964USO bigBed narrowPeak peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF764QTP 1391270 ENCODE Processing Pipeline 8657ad5beb5e8ee39d05ccd1a4a28b48 https://www.encodeproject.org/files/ENCFF964USO/@@download/ENCFF964USO.bigBed mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF600KCV bigWig signal p-value ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF331CEU, ENCFF636CIJ 420335757 ENCODE Processing Pipeline aa1d6ec77cd06b8dbd3b4652e9ad7a92 https://www.encodeproject.org/files/ENCFF600KCV/@@download/ENCFF600KCV.bigWig mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF991BCZ bigWig signal p-value ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF296XDZ, ENCFF331CEU, ENCFF508LNS 501791747 ENCODE Processing Pipeline 539f1db74c7d0e07aed035dbd3de195c https://www.encodeproject.org/files/ENCFF991BCZ/@@download/ENCFF991BCZ.bigWig mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF270UKW bigWig signal p-value ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF296XDZ, ENCFF331CEU, ENCFF508LNS, ENCFF636CIJ 711425912 ENCODE Processing Pipeline 950cfa42e2900a6bd4c7ebf7c8c820f2 https://www.encodeproject.org/files/ENCFF270UKW/@@download/ENCFF270UKW.bigWig mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF716KXO bed narrowPeak replicated peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF030BLV, ENCFF764QTP, ENCFF873YKN 149023 ENCODE Processing Pipeline 21d7649a359692621957bcb142a82f9d https://www.encodeproject.org/files/ENCFF716KXO/@@download/ENCFF716KXO.bed.gz mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF363IUI bigWig fold change over control ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF296XDZ, ENCFF331CEU, ENCFF508LNS, ENCFF636CIJ 892061879 ENCODE Processing Pipeline 0e94c1169d475d4ff5d535c196484a0e https://www.encodeproject.org/files/ENCFF363IUI/@@download/ENCFF363IUI.bigWig mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF684COH bigWig fold change over control ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF296XDZ, ENCFF331CEU, ENCFF508LNS 592248217 ENCODE Processing Pipeline 66cdffce5ebb7cd1874f649361848d92 https://www.encodeproject.org/files/ENCFF684COH/@@download/ENCFF684COH.bigWig mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF042WOZ bigWig fold change over control ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF331CEU, ENCFF636CIJ 490727804 ENCODE Processing Pipeline 69e9ea30a2abaead0685d90f52f7fa99 https://www.encodeproject.org/files/ENCFF042WOZ/@@download/ENCFF042WOZ.bigWig mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF082UNF bigBed narrowPeak replicated peaks ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF716KXO 340663 ENCODE Processing Pipeline dbf4849a88dd499fae5f4359c1fe6e9b https://www.encodeproject.org/files/ENCFF082UNF/@@download/ENCFF082UNF.bigBed mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF001NHR bigWig signal ENCSR000ERS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-human DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NHS 216545365 Michael Snyder, Stanford 5eca0032786fba88dd716e123d3badf5 https://www.encodeproject.org/files/ENCFF001NHR/@@download/ENCFF001NHR.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NHS bam alignments ENCSR000ERS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-human DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NIM 479223243 Michael Snyder, Stanford d97cdbc486e220ba95773984a84dd784 https://www.encodeproject.org/files/ENCFF001NHS/@@download/ENCFF001NHS.bam mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NIM fastq reads ENCSR000ERS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-human DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1491776932 Michael Snyder, Stanford f8feb312c4aa83cca0f1f7b3922205f4 https://www.encodeproject.org/files/ENCFF001NIM/@@download/ENCFF001NIM.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking, low read depth ENCFF324OBT bam unfiltered alignments ENCSR000ERS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-human DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIM, ENCFF018NEO 1535757546 ENCODE Processing Pipeline ba8648e0f9fc98872e365cf2b99e83fd https://www.encodeproject.org/files/ENCFF324OBT/@@download/ENCFF324OBT.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF339ZWC bam alignments ENCSR000ERS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-human DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIM, ENCFF018NEO 438707879 ENCODE Processing Pipeline ee66d63014c0b74a4954e443eceaad85 https://www.encodeproject.org/files/ENCFF339ZWC/@@download/ENCFF339ZWC.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF439UTP fastq reads ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2278122495 Bing Ren, UCSD eda8cb91a6329e0cb45309c84d73e7ac SRA:SRR3652040 https://www.encodeproject.org/files/ENCFF439UTP/@@download/ENCFF439UTP.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released inconsistent platforms ENCFF949BVF fastq reads ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1967851798 Bing Ren, UCSD 51806a16de3d09d8555383a2f6455f7f SRA:SRR3652041 https://www.encodeproject.org/files/ENCFF949BVF/@@download/ENCFF949BVF.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released inconsistent platforms ENCFF009VQO bam alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF949BVF 1600122865 ENCODE Processing Pipeline a1cc54b186ec70ca271768bb1aa41255 https://www.encodeproject.org/files/ENCFF009VQO/@@download/ENCFF009VQO.bam mm10-minimal archived inconsistent platforms ENCFF119AXB bam alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF439UTP, ENCFF806TVZ 1860869142 ENCODE Processing Pipeline 5d93497451d9940dc1498a5dd00aad11 https://www.encodeproject.org/files/ENCFF119AXB/@@download/ENCFF119AXB.bam mm10-minimal archived inconsistent platforms ENCFF980AZC bigBed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF285ATO 1778508 ENCODE Processing Pipeline 47f64c59a4e40e35973408d9153457df https://www.encodeproject.org/files/ENCFF980AZC/@@download/ENCFF980AZC.bigBed mm10-minimal archived inconsistent platforms ENCFF285ATO bed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF119AXB, ENCFF582LOU 545328 ENCODE Processing Pipeline 2a07ad93ff2156481c09637dbc330b14 https://www.encodeproject.org/files/ENCFF285ATO/@@download/ENCFF285ATO.bed.gz mm10-minimal archived inconsistent platforms ENCFF606SHK bed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF009VQO, ENCFF245YVK 536409 ENCODE Processing Pipeline d4f98d3e6181977731837f5c575a5291 https://www.encodeproject.org/files/ENCFF606SHK/@@download/ENCFF606SHK.bed.gz mm10-minimal archived inconsistent platforms ENCFF245HUH bed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF009VQO, ENCFF119AXB, ENCFF245YVK, ENCFF582LOU 619979 ENCODE Processing Pipeline 3acd2b8d78903ce9a495e2c6c3b80607 https://www.encodeproject.org/files/ENCFF245HUH/@@download/ENCFF245HUH.bed.gz mm10-minimal archived inconsistent platforms ENCFF285REP bigBed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF606SHK 1763449 ENCODE Processing Pipeline 8598b936614a6025ed0cfd769867b8aa https://www.encodeproject.org/files/ENCFF285REP/@@download/ENCFF285REP.bigBed mm10-minimal archived inconsistent platforms ENCFF788VZJ bigBed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245HUH 1928225 ENCODE Processing Pipeline 2b64407ecfbce5ac3bb9e23a2af1746a https://www.encodeproject.org/files/ENCFF788VZJ/@@download/ENCFF788VZJ.bigBed mm10-minimal archived inconsistent platforms ENCFF262QGJ bigWig signal p-value ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF119AXB, ENCFF582LOU 627399190 ENCODE Processing Pipeline 02918427b681dd508ff54549aa2e95ac https://www.encodeproject.org/files/ENCFF262QGJ/@@download/ENCFF262QGJ.bigWig mm10-minimal archived inconsistent platforms ENCFF127JGJ bigWig signal p-value ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF009VQO, ENCFF245YVK 451778033 ENCODE Processing Pipeline 78df7746c6f8dcf02d5a0bb58a9dc651 https://www.encodeproject.org/files/ENCFF127JGJ/@@download/ENCFF127JGJ.bigWig mm10-minimal archived inconsistent platforms ENCFF723WOU bigWig signal p-value ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF009VQO, ENCFF119AXB, ENCFF245YVK, ENCFF582LOU 996777622 ENCODE Processing Pipeline bfced7d33ef4651a1a6790003d509de9 https://www.encodeproject.org/files/ENCFF723WOU/@@download/ENCFF723WOU.bigWig mm10-minimal archived inconsistent platforms ENCFF248KPE bigWig fold change over control ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF119AXB, ENCFF582LOU 702738154 ENCODE Processing Pipeline 4020a547bca7033f5984ad702dc9f932 https://www.encodeproject.org/files/ENCFF248KPE/@@download/ENCFF248KPE.bigWig mm10-minimal archived inconsistent platforms ENCFF083DBF bigWig fold change over control ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF009VQO, ENCFF245YVK 556089331 ENCODE Processing Pipeline ee9908d3934976985c82f5fd50cb8f60 https://www.encodeproject.org/files/ENCFF083DBF/@@download/ENCFF083DBF.bigWig mm10-minimal archived inconsistent platforms ENCFF263WEH bigWig fold change over control ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF009VQO, ENCFF119AXB, ENCFF245YVK, ENCFF582LOU 1172953815 ENCODE Processing Pipeline afafc051371a4016501f7e7030f9b37d https://www.encodeproject.org/files/ENCFF263WEH/@@download/ENCFF263WEH.bigWig mm10-minimal archived inconsistent platforms ENCFF227BWB bed narrowPeak replicated peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245HUH, ENCFF285ATO, ENCFF606SHK 641555 ENCODE Processing Pipeline 9810cab01574ea274df1f832fd3755a7 https://www.encodeproject.org/files/ENCFF227BWB/@@download/ENCFF227BWB.bed.gz mm10-minimal archived inconsistent platforms ENCFF039HDB bigBed narrowPeak replicated peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF227BWB 1552565 ENCODE Processing Pipeline 28602caa2b65ca3c4ed1f9104c738c4e https://www.encodeproject.org/files/ENCFF039HDB/@@download/ENCFF039HDB.bigBed mm10-minimal archived inconsistent platforms ENCFF560QLJ bam unfiltered alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF439UTP 2672288324 ENCODE Processing Pipeline 86e9cf2d91978bb5d29f9049bb3fe234 https://www.encodeproject.org/files/ENCFF560QLJ/@@download/ENCFF560QLJ.bam mm10 released inconsistent platforms ENCFF250CGZ bam unfiltered alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF949BVF 2307093207 ENCODE Processing Pipeline 7f4960c78a701af61d1d8c27f3cc9bed https://www.encodeproject.org/files/ENCFF250CGZ/@@download/ENCFF250CGZ.bam mm10 released inconsistent platforms ENCFF404CGC bam alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF439UTP 1860422931 ENCODE Processing Pipeline 9a69f4f860378692ab5c0104037945eb https://www.encodeproject.org/files/ENCFF404CGC/@@download/ENCFF404CGC.bam mm10 released inconsistent platforms ENCFF342QJH bam alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF949BVF 1599728652 ENCODE Processing Pipeline d10c043c79d96532ba246daac6d37993 https://www.encodeproject.org/files/ENCFF342QJH/@@download/ENCFF342QJH.bam mm10 released inconsistent platforms ENCFF859GYP bed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF404CGC 545948 ENCODE Processing Pipeline a10f0bcbb5d1cd7da1f9bbdd911c4c71 https://www.encodeproject.org/files/ENCFF859GYP/@@download/ENCFF859GYP.bed.gz mm10 released inconsistent platforms ENCFF287PKE bed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF342QJH, ENCFF389YBT 541004 ENCODE Processing Pipeline 8bac959d20223325a2411b19859edaf6 https://www.encodeproject.org/files/ENCFF287PKE/@@download/ENCFF287PKE.bed.gz mm10 released inconsistent platforms ENCFF261MBY bed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF342QJH, ENCFF389YBT, ENCFF404CGC 623519 ENCODE Processing Pipeline 67123cf92c4faa6af0a192f2a80e04fd https://www.encodeproject.org/files/ENCFF261MBY/@@download/ENCFF261MBY.bed.gz mm10 released inconsistent platforms ENCFF098UIH bigBed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF859GYP 1780005 ENCODE Processing Pipeline 4b2857257cc0d719dbf2998772c0a6d5 https://www.encodeproject.org/files/ENCFF098UIH/@@download/ENCFF098UIH.bigBed mm10 released inconsistent platforms ENCFF604QFL bigBed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF287PKE 1777808 ENCODE Processing Pipeline 9a532f6b832d8a68f990191249507089 https://www.encodeproject.org/files/ENCFF604QFL/@@download/ENCFF604QFL.bigBed mm10 released inconsistent platforms ENCFF934WHQ bigBed narrowPeak peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF261MBY 1929279 ENCODE Processing Pipeline b3eaee5a63e4bb2f21d8cef3667e9e7f https://www.encodeproject.org/files/ENCFF934WHQ/@@download/ENCFF934WHQ.bigBed mm10 released inconsistent platforms ENCFF659LPI bigWig signal p-value ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF404CGC 567048028 ENCODE Processing Pipeline ff4426365f490b9e65920564a8f3eaaa https://www.encodeproject.org/files/ENCFF659LPI/@@download/ENCFF659LPI.bigWig mm10 released inconsistent platforms ENCFF618RHB bigWig signal p-value ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF342QJH, ENCFF389YBT 600212280 ENCODE Processing Pipeline 866b2e731c9e639cc259b3d32ab64315 https://www.encodeproject.org/files/ENCFF618RHB/@@download/ENCFF618RHB.bigWig mm10 released inconsistent platforms ENCFF801HFW bigWig signal p-value ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF342QJH, ENCFF389YBT, ENCFF404CGC 1023065726 ENCODE Processing Pipeline 0d329f6e5c3028bc641f0002f8ff7044 https://www.encodeproject.org/files/ENCFF801HFW/@@download/ENCFF801HFW.bigWig mm10 released inconsistent platforms ENCFF021PST bigWig fold change over control ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF404CGC 723279743 ENCODE Processing Pipeline 8fc5553e41fa506ff9f280f8563434ed https://www.encodeproject.org/files/ENCFF021PST/@@download/ENCFF021PST.bigWig mm10 released inconsistent platforms ENCFF084ZFD bigWig fold change over control ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF342QJH, ENCFF389YBT 654281464 ENCODE Processing Pipeline 17fea0042e32e0ab243d7f8f05933782 https://www.encodeproject.org/files/ENCFF084ZFD/@@download/ENCFF084ZFD.bigWig mm10 released inconsistent platforms ENCFF525EWD bigWig fold change over control ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF342QJH, ENCFF389YBT, ENCFF404CGC 1239906880 ENCODE Processing Pipeline b508939aa1bd644fad64b094ca5a2767 https://www.encodeproject.org/files/ENCFF525EWD/@@download/ENCFF525EWD.bigWig mm10 released inconsistent platforms ENCFF956QXI bed narrowPeak replicated peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF261MBY, ENCFF287PKE, ENCFF859GYP 651737 ENCODE Processing Pipeline 0538aa299b0e6f5772c4e4634713f8ad https://www.encodeproject.org/files/ENCFF956QXI/@@download/ENCFF956QXI.bed.gz mm10 released inconsistent platforms ENCFF053QZI bigBed narrowPeak replicated peaks ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF956QXI 1566525 ENCODE Processing Pipeline 63089671639b8a04749f8bf77257a769 https://www.encodeproject.org/files/ENCFF053QZI/@@download/ENCFF053QZI.bigBed mm10 released inconsistent platforms ENCFF458LQQ fastq reads ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1285487493 Bing Ren, UCSD 25cef85493e0a980f6bd2bd436b37cee SRA:SRR3651405 https://www.encodeproject.org/files/ENCFF458LQQ/@@download/ENCFF458LQQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/, /files/ENCFF884YRX/ released mild to moderate bottlenecking ENCFF748RPL fastq reads ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1265994246 Bing Ren, UCSD 8836e2f43457088798fb77c9f316ab72 SRA:SRR3651406 https://www.encodeproject.org/files/ENCFF748RPL/@@download/ENCFF748RPL.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/, /files/ENCFF751HMJ/ released mild to moderate bottlenecking ENCFF181YLG bam alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF458LQQ, ENCFF806TVZ 1148250758 ENCODE Processing Pipeline 40ff8df56dc73c9f1291b5833e14c5ff https://www.encodeproject.org/files/ENCFF181YLG/@@download/ENCFF181YLG.bam mm10-minimal archived mild to moderate bottlenecking ENCFF100DZF bam alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF748RPL, ENCFF806TVZ 1142296023 ENCODE Processing Pipeline de3c36caa3eebeaa767fe8204c01a4f0 https://www.encodeproject.org/files/ENCFF100DZF/@@download/ENCFF100DZF.bam mm10-minimal archived mild to moderate bottlenecking ENCFF797HSZ bed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF100DZF, ENCFF405LXU 556573 ENCODE Processing Pipeline 3e1878af24fb29bf5f79c9f7ea743512 https://www.encodeproject.org/files/ENCFF797HSZ/@@download/ENCFF797HSZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF242DZZ bed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF181YLG, ENCFF980WPU 574256 ENCODE Processing Pipeline b9a72547bd68a3cfd812c8b64051222b https://www.encodeproject.org/files/ENCFF242DZZ/@@download/ENCFF242DZZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF585OUV bigBed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF797HSZ 1797770 ENCODE Processing Pipeline 70b7dec8f3c9a0dbd3df6005a72f5eb8 https://www.encodeproject.org/files/ENCFF585OUV/@@download/ENCFF585OUV.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF621OQP bigBed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF471LXJ 1925747 ENCODE Processing Pipeline 515c4b42f094bfdda0bcb67abef8fce9 https://www.encodeproject.org/files/ENCFF621OQP/@@download/ENCFF621OQP.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF471LXJ bed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF100DZF, ENCFF181YLG, ENCFF405LXU, ENCFF980WPU 630253 ENCODE Processing Pipeline 513cdd8cb1b2024e920f498a5f556d17 https://www.encodeproject.org/files/ENCFF471LXJ/@@download/ENCFF471LXJ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF091TEI bigBed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF242DZZ 1843541 ENCODE Processing Pipeline a1cee48dc11c66c628cc793afcc96a55 https://www.encodeproject.org/files/ENCFF091TEI/@@download/ENCFF091TEI.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF059VVD bigWig signal p-value ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF181YLG, ENCFF980WPU 565647746 ENCODE Processing Pipeline 1d0a211285f8e87988bf8d98ecf4d6b3 https://www.encodeproject.org/files/ENCFF059VVD/@@download/ENCFF059VVD.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF301OTP bigWig signal p-value ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF100DZF, ENCFF405LXU 604847155 ENCODE Processing Pipeline 5c3367fb04fbcdebd1758be1c47fd6ee https://www.encodeproject.org/files/ENCFF301OTP/@@download/ENCFF301OTP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF734LXC bigWig signal p-value ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF100DZF, ENCFF181YLG, ENCFF405LXU, ENCFF980WPU 1062446144 ENCODE Processing Pipeline e8cc1e1695c6bde36092fb231f630108 https://www.encodeproject.org/files/ENCFF734LXC/@@download/ENCFF734LXC.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF664SPJ bigWig fold change over control ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF100DZF, ENCFF405LXU 575592394 ENCODE Processing Pipeline 5e910361dc270d7970c6440af9934680 https://www.encodeproject.org/files/ENCFF664SPJ/@@download/ENCFF664SPJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF125ATJ bigWig fold change over control ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF181YLG, ENCFF980WPU 583222323 ENCODE Processing Pipeline 54a55eaab6e4c711cfdf2fd0541d3864 https://www.encodeproject.org/files/ENCFF125ATJ/@@download/ENCFF125ATJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF021SOD bigWig fold change over control ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF100DZF, ENCFF181YLG, ENCFF405LXU, ENCFF980WPU 1068310805 ENCODE Processing Pipeline f3dc13e7d984f9ffdd0c7da579859bbe https://www.encodeproject.org/files/ENCFF021SOD/@@download/ENCFF021SOD.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF617KYU bigBed narrowPeak replicated peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF620KWL 1528266 ENCODE Processing Pipeline fdb64d3f52d388308857fab1ce990a7e https://www.encodeproject.org/files/ENCFF617KYU/@@download/ENCFF617KYU.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF620KWL bed narrowPeak replicated peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF242DZZ, ENCFF471LXJ, ENCFF797HSZ 633819 ENCODE Processing Pipeline f64e890c8fd5518a0729d38752177b08 https://www.encodeproject.org/files/ENCFF620KWL/@@download/ENCFF620KWL.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF867PLP bam alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF748RPL 1142043780 ENCODE Processing Pipeline 828fc141dd2372f8bc4f25a8d00c8a27 https://www.encodeproject.org/files/ENCFF867PLP/@@download/ENCFF867PLP.bam mm10 released mild to moderate bottlenecking ENCFF182ZPF bam unfiltered alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF748RPL 1621848642 ENCODE Processing Pipeline ae4155f58579ad861bd450855bb23048 https://www.encodeproject.org/files/ENCFF182ZPF/@@download/ENCFF182ZPF.bam mm10 released mild to moderate bottlenecking ENCFF941QJZ bam unfiltered alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF458LQQ 1658567294 ENCODE Processing Pipeline 0677e403a2d6c25b650cbd5c69641f59 https://www.encodeproject.org/files/ENCFF941QJZ/@@download/ENCFF941QJZ.bam mm10 released mild to moderate bottlenecking ENCFF364XLJ bam alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF458LQQ 1147998796 ENCODE Processing Pipeline 380f5b85c6c9bdc2473b4b40132115f9 https://www.encodeproject.org/files/ENCFF364XLJ/@@download/ENCFF364XLJ.bam mm10 released mild to moderate bottlenecking ENCFF599OYC bed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF867PLP 556853 ENCODE Processing Pipeline d0d91e9c42cbd8a9cff2b3632e5b144a https://www.encodeproject.org/files/ENCFF599OYC/@@download/ENCFF599OYC.bed.gz mm10 released mild to moderate bottlenecking ENCFF117CPU bed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF364XLJ, ENCFF609XDL 574494 ENCODE Processing Pipeline deb5e8d0338e487b96f543a511e49a62 https://www.encodeproject.org/files/ENCFF117CPU/@@download/ENCFF117CPU.bed.gz mm10 released mild to moderate bottlenecking ENCFF263QYO bigBed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF599OYC 1799669 ENCODE Processing Pipeline 14d5e6db578458b7284e23d502035de4 https://www.encodeproject.org/files/ENCFF263QYO/@@download/ENCFF263QYO.bigBed mm10 released mild to moderate bottlenecking ENCFF142CKQ bed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF364XLJ, ENCFF399MAG, ENCFF609XDL, ENCFF867PLP 629024 ENCODE Processing Pipeline a41a80074278c1d5eb2a83b0caa74ec1 https://www.encodeproject.org/files/ENCFF142CKQ/@@download/ENCFF142CKQ.bed.gz mm10 released mild to moderate bottlenecking ENCFF731XPD bigBed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF117CPU 1845884 ENCODE Processing Pipeline 4c2a656c58cda793cc6134de13193668 https://www.encodeproject.org/files/ENCFF731XPD/@@download/ENCFF731XPD.bigBed mm10 released mild to moderate bottlenecking ENCFF352UMI bigBed narrowPeak peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF142CKQ 1921010 ENCODE Processing Pipeline a1fba5d43f40870eb819b4aaf998f395 https://www.encodeproject.org/files/ENCFF352UMI/@@download/ENCFF352UMI.bigBed mm10 released mild to moderate bottlenecking ENCFF865YCZ bigWig signal p-value ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF867PLP 603933029 ENCODE Processing Pipeline 4237c819aea95cf4282c39fcd93d6008 https://www.encodeproject.org/files/ENCFF865YCZ/@@download/ENCFF865YCZ.bigWig mm10 released mild to moderate bottlenecking ENCFF870XTZ bigWig signal p-value ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF364XLJ, ENCFF609XDL 558120136 ENCODE Processing Pipeline 448cd266a5205fdeef83a79d95155c84 https://www.encodeproject.org/files/ENCFF870XTZ/@@download/ENCFF870XTZ.bigWig mm10 released mild to moderate bottlenecking ENCFF291COW bigWig signal p-value ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF364XLJ, ENCFF399MAG, ENCFF609XDL, ENCFF867PLP 895013711 ENCODE Processing Pipeline 9f78074cf9494e965552f3d60f152eff https://www.encodeproject.org/files/ENCFF291COW/@@download/ENCFF291COW.bigWig mm10 released mild to moderate bottlenecking ENCFF374QKG bigWig fold change over control ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF867PLP 574308739 ENCODE Processing Pipeline 4cbda1d53177d178e5fe881a58ca2571 https://www.encodeproject.org/files/ENCFF374QKG/@@download/ENCFF374QKG.bigWig mm10 released mild to moderate bottlenecking ENCFF238KQU bigWig fold change over control ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF364XLJ, ENCFF609XDL 582619523 ENCODE Processing Pipeline 4aea5669755a063986127525a2167a7c https://www.encodeproject.org/files/ENCFF238KQU/@@download/ENCFF238KQU.bigWig mm10 released mild to moderate bottlenecking ENCFF508WCS bigWig fold change over control ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF364XLJ, ENCFF399MAG, ENCFF609XDL, ENCFF867PLP 1086045521 ENCODE Processing Pipeline 9d61c237c3fece993d581c840ffbd713 https://www.encodeproject.org/files/ENCFF508WCS/@@download/ENCFF508WCS.bigWig mm10 released mild to moderate bottlenecking ENCFF517PZH bigBed narrowPeak replicated peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF306LDH 1535019 ENCODE Processing Pipeline 5d8ead4f022461fe7c3721bdf2db2984 https://www.encodeproject.org/files/ENCFF517PZH/@@download/ENCFF517PZH.bigBed mm10 released mild to moderate bottlenecking ENCFF306LDH bed narrowPeak replicated peaks ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF117CPU, ENCFF142CKQ, ENCFF599OYC 639575 ENCODE Processing Pipeline 2aaeda9918646198b2274821feb0e909 https://www.encodeproject.org/files/ENCFF306LDH/@@download/ENCFF306LDH.bed.gz mm10 released mild to moderate bottlenecking ENCFF002AJC fastq reads ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1590553447 Bing Ren, UCSD ec6128f51067a31796b950136d53d93f SRA:SRR3652398 https://www.encodeproject.org/files/ENCFF002AJC/@@download/ENCFF002AJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF002AJE fastq reads ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1487782741 Bing Ren, UCSD 619dd533248a390a8ac85ccf755de14a SRA:SRR3652399 https://www.encodeproject.org/files/ENCFF002AJE/@@download/ENCFF002AJE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF722EGM bam alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJC, ENCFF806TVZ 1382582212 ENCODE Processing Pipeline 42dca3f18c6c003cb1dac03e7b91c03d https://www.encodeproject.org/files/ENCFF722EGM/@@download/ENCFF722EGM.bam mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF849LHA bam alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJE, ENCFF806TVZ 1305609468 ENCODE Processing Pipeline 860199e02e8c3499f287bc8479f21472 https://www.encodeproject.org/files/ENCFF849LHA/@@download/ENCFF849LHA.bam mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF381WEE bigBed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF336GER 4018744 ENCODE Processing Pipeline d7455a23b1bb93e885c82aee9bd8b562 https://www.encodeproject.org/files/ENCFF381WEE/@@download/ENCFF381WEE.bigBed mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF336GER bed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF528CCC, ENCFF722EGM, ENCFF849LHA 1800277 ENCODE Processing Pipeline b616553c710e5b71983f5c53c4062feb https://www.encodeproject.org/files/ENCFF336GER/@@download/ENCFF336GER.bed.gz mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF149IBA bigWig signal p-value ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF722EGM 520905700 ENCODE Processing Pipeline 31ac31a74ff28b4d5d3f8bca36114d35 https://www.encodeproject.org/files/ENCFF149IBA/@@download/ENCFF149IBA.bigWig mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF680OTF bigBed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF965XTG 4217132 ENCODE Processing Pipeline fdc343a2335a8b365a8b28150cef8b43 https://www.encodeproject.org/files/ENCFF680OTF/@@download/ENCFF680OTF.bigBed mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF965XTG bed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF722EGM 1854842 ENCODE Processing Pipeline 927fa5339a1af634a42b05daccbb9d3d https://www.encodeproject.org/files/ENCFF965XTG/@@download/ENCFF965XTG.bed.gz mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF357UNZ bed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF849LHA 2389082 ENCODE Processing Pipeline 55348b09e21e7d1f796c0b94321f1b85 https://www.encodeproject.org/files/ENCFF357UNZ/@@download/ENCFF357UNZ.bed.gz mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF033DUY bigBed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF357UNZ 5134664 ENCODE Processing Pipeline a17f573a163fe9a700ddd062227cde70 https://www.encodeproject.org/files/ENCFF033DUY/@@download/ENCFF033DUY.bigBed mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF346HOI bigWig signal p-value ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF849LHA 457958959 ENCODE Processing Pipeline faf2a7c66c001fedf6f7479ca8839f71 https://www.encodeproject.org/files/ENCFF346HOI/@@download/ENCFF346HOI.bigWig mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF209YXF bed narrowPeak replicated peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF336GER, ENCFF357UNZ, ENCFF965XTG 1699007 ENCODE Processing Pipeline 70cb563740c6be741e0bc38a89b89370 https://www.encodeproject.org/files/ENCFF209YXF/@@download/ENCFF209YXF.bed.gz mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF190YRQ bigWig fold change over control ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF722EGM 636098874 ENCODE Processing Pipeline 441687b051273eb13ff48241cfcce983 https://www.encodeproject.org/files/ENCFF190YRQ/@@download/ENCFF190YRQ.bigWig mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF166RVO bigWig fold change over control ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF849LHA 580956003 ENCODE Processing Pipeline 4c66ce0a9f282de2215296b500b8345d https://www.encodeproject.org/files/ENCFF166RVO/@@download/ENCFF166RVO.bigWig mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF401DBN bigWig signal p-value ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF528CCC, ENCFF722EGM, ENCFF849LHA 700051519 ENCODE Processing Pipeline 2fa2db5536dd33e5955c2e940db31ebf https://www.encodeproject.org/files/ENCFF401DBN/@@download/ENCFF401DBN.bigWig mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF697KYC bigWig fold change over control ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF528CCC, ENCFF722EGM, ENCFF849LHA 937963850 ENCODE Processing Pipeline cce5b7a091fdefcee557e6eb980acacf https://www.encodeproject.org/files/ENCFF697KYC/@@download/ENCFF697KYC.bigWig mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF624BVK bigBed narrowPeak replicated peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF209YXF 3213403 ENCODE Processing Pipeline 35ac517a7e1168a86d4f7a4a2bd474bb https://www.encodeproject.org/files/ENCFF624BVK/@@download/ENCFF624BVK.bigBed mm10-minimal archived low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF962EMC bam unfiltered alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJE, ENCFF018NEO 1714119601 ENCODE Processing Pipeline 67ae8427f2747ffff5f5652e94279f65 https://www.encodeproject.org/files/ENCFF962EMC/@@download/ENCFF962EMC.bam mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF956HNC bam unfiltered alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJC, ENCFF018NEO 1849448825 ENCODE Processing Pipeline 40e6d368926a839372b2002fa19ed3a1 https://www.encodeproject.org/files/ENCFF956HNC/@@download/ENCFF956HNC.bam mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF086SNO bam alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJE, ENCFF018NEO 1305393970 ENCODE Processing Pipeline 7dd564eafd781a126358bd5205f2c941 https://www.encodeproject.org/files/ENCFF086SNO/@@download/ENCFF086SNO.bam mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF748IHX bam alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJC, ENCFF018NEO 1382264880 ENCODE Processing Pipeline 0446b594949432d3af01a3a50030f039 https://www.encodeproject.org/files/ENCFF748IHX/@@download/ENCFF748IHX.bam mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF515YBW bed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF748IHX 1907062 ENCODE Processing Pipeline 48dd48908655f77e03536843ba429c87 https://www.encodeproject.org/files/ENCFF515YBW/@@download/ENCFF515YBW.bed.gz mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF245UMD bed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF086SNO 1237591 ENCODE Processing Pipeline 4a6a5ffc72da05e4114fa557a9c5b0aa https://www.encodeproject.org/files/ENCFF245UMD/@@download/ENCFF245UMD.bed.gz mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF088ZEB bed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF086SNO, ENCFF411XWG, ENCFF748IHX 1901167 ENCODE Processing Pipeline 3aa7d6c54d265f6bd38ee25e55e5cebe https://www.encodeproject.org/files/ENCFF088ZEB/@@download/ENCFF088ZEB.bed.gz mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF016OPC bigBed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF515YBW 4286944 ENCODE Processing Pipeline 9824d659acdfa43d0fb9dc76e8e2a52d https://www.encodeproject.org/files/ENCFF016OPC/@@download/ENCFF016OPC.bigBed mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF495RNV bigBed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF245UMD 2960303 ENCODE Processing Pipeline f8b4dd248a284ecb038234c0c8422d33 https://www.encodeproject.org/files/ENCFF495RNV/@@download/ENCFF495RNV.bigBed mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF263LZQ bigBed narrowPeak peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088ZEB 4207390 ENCODE Processing Pipeline 3bbdea3efec94aa1a990c2dc65ad4057 https://www.encodeproject.org/files/ENCFF263LZQ/@@download/ENCFF263LZQ.bigBed mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF269QRI bigWig signal p-value ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF748IHX 561910112 ENCODE Processing Pipeline 63cb0c5811a27cd3a4f51ed60b95abaa https://www.encodeproject.org/files/ENCFF269QRI/@@download/ENCFF269QRI.bigWig mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF520CTX bigWig signal p-value ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF086SNO 394480737 ENCODE Processing Pipeline f97711da01f6a8a69a4c3be1b62a1d20 https://www.encodeproject.org/files/ENCFF520CTX/@@download/ENCFF520CTX.bigWig mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF954GWV bigWig signal p-value ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF086SNO, ENCFF411XWG, ENCFF748IHX 691117031 ENCODE Processing Pipeline 0acfc1b7f383835db778f0a4bdaf0fa5 https://www.encodeproject.org/files/ENCFF954GWV/@@download/ENCFF954GWV.bigWig mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF276FVH bigWig fold change over control ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF748IHX 606138110 ENCODE Processing Pipeline 6bb3942e4897872e6efd19559b20c990 https://www.encodeproject.org/files/ENCFF276FVH/@@download/ENCFF276FVH.bigWig mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF503GQP bigWig fold change over control ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF086SNO 507063095 ENCODE Processing Pipeline 9c26bb869901731f2c50efed9df704bb https://www.encodeproject.org/files/ENCFF503GQP/@@download/ENCFF503GQP.bigWig mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF586OQX bigWig fold change over control ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF086SNO, ENCFF411XWG, ENCFF748IHX 920209471 ENCODE Processing Pipeline 4f39dbd626f72c69a60c9b42c40ce00c https://www.encodeproject.org/files/ENCFF586OQX/@@download/ENCFF586OQX.bigWig mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF898CIL bed narrowPeak replicated peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088ZEB, ENCFF245UMD, ENCFF515YBW 1572133 ENCODE Processing Pipeline a0d41fed3678248dadbb7a2482c7bcbb https://www.encodeproject.org/files/ENCFF898CIL/@@download/ENCFF898CIL.bed.gz mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF981SYI bigBed narrowPeak replicated peaks ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF898CIL 3006643 ENCODE Processing Pipeline 8bb31d22a9a4c0991acfb2b5561705a7 https://www.encodeproject.org/files/ENCFF981SYI/@@download/ENCFF981SYI.bigBed mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF001MTG bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MTO 1054957261 Ross Hardison, PennState 7ef13178b86436e9b83b7176b4eef420 https://www.encodeproject.org/files/ENCFF001MTG/@@download/ENCFF001MTG.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTH bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MTM 488848288 Ross Hardison, PennState cd15944bc03e23408a58cbdecae01d94 https://www.encodeproject.org/files/ENCFF001MTH/@@download/ENCFF001MTH.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTI bigBed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGC 208870 Ross Hardison, PennState 66c90bf8a7b733183a733b1cd38ebfe7 https://www.encodeproject.org/files/ENCFF001MTI/@@download/ENCFF001MTI.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTJ bigBed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGD 247876 Ross Hardison, PennState 2028f1690e3ad45fa0ffc09b5f6ed87c https://www.encodeproject.org/files/ENCFF001MTJ/@@download/ENCFF001MTJ.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTK bigBed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGE 108730 Ross Hardison, PennState bd7278ffc8c4e292a34556c3466551fe https://www.encodeproject.org/files/ENCFF001MTK/@@download/ENCFF001MTK.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTL bigWig signal ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1603101155 Ross Hardison, PennState 86bc5a27ec88aa218c249320a05aa627 https://www.encodeproject.org/files/ENCFF001MTL/@@download/ENCFF001MTL.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MTM fastq reads ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 402857263 Ross Hardison, PennState e0f1b28b34d6313a59b7f7f06328ce29 https://www.encodeproject.org/files/ENCFF001MTM/@@download/ENCFF001MTM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released low read length, inconsistent platforms, inconsistent control read length biological replicates with identical biosample insufficient read depth ENCFF001MTN bigWig signal ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2642991299 Ross Hardison, PennState 9551bbc4ee40001b9425b94f38c89795 https://www.encodeproject.org/files/ENCFF001MTN/@@download/ENCFF001MTN.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MTO fastq reads ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 949249241 Ross Hardison, PennState b7292d33c5b4f3eca34ac2b678494bc8 https://www.encodeproject.org/files/ENCFF001MTO/@@download/ENCFF001MTO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MTP bigWig signal ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3171942198 Ross Hardison, PennState 2135c242402d6f84da74b392b2fb4fbc https://www.encodeproject.org/files/ENCFF001MTP/@@download/ENCFF001MTP.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YGC bed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 81006 Ross Hardison, PennState 5fa9ccb670e593bda00fd2493ce80506 https://www.encodeproject.org/files/ENCFF001YGC/@@download/ENCFF001YGC.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YGD bed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 101109 Ross Hardison, PennState 1c6d51cd1d159de92b158de179e6f6f0 https://www.encodeproject.org/files/ENCFF001YGD/@@download/ENCFF001YGD.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YGE bed broadPeak peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 38421 Ross Hardison, PennState 3f91ac3994370db7b8ccc4924f4fedfd https://www.encodeproject.org/files/ENCFF001YGE/@@download/ENCFF001YGE.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF537JNZ bam unfiltered alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MTM, ENCFF018NEO 525696592 ENCODE Processing Pipeline 9a0a788cdc0bbe51415cb0a2ca2fdc8b https://www.encodeproject.org/files/ENCFF537JNZ/@@download/ENCFF537JNZ.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF044IQW bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MTM, ENCFF018NEO 364920972 ENCODE Processing Pipeline 771b1c575a449a767f4b021d19dada63 https://www.encodeproject.org/files/ENCFF044IQW/@@download/ENCFF044IQW.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF459UCO bam unfiltered alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MTO, ENCFF018NEO 1079475376 ENCODE Processing Pipeline 6faa9b7cd24b4e835ef1865210c964f3 https://www.encodeproject.org/files/ENCFF459UCO/@@download/ENCFF459UCO.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF407CBS bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MTO, ENCFF018NEO 335533230 ENCODE Processing Pipeline 898f04abbdc6dd072550bcde7c3fc965 https://www.encodeproject.org/files/ENCFF407CBS/@@download/ENCFF407CBS.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF744TCR bigWig signal p-value ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF044IQW, ENCFF383IWZ, ENCFF676LVI 762018798 ENCODE Processing Pipeline 455a8bb40879081e64af2bc7d7813d0e https://www.encodeproject.org/files/ENCFF744TCR/@@download/ENCFF744TCR.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF974KFZ bed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF044IQW, ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 5620793 ENCODE Processing Pipeline fdf5f47bc6253e5ce420eb20c78466b3 https://www.encodeproject.org/files/ENCFF974KFZ/@@download/ENCFF974KFZ.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF023REQ bed narrowPeak conservative idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF266CYV, ENCFF547MET, ENCFF827ERW, ENCFF974KFZ 43131 ENCODE Processing Pipeline 0f8aeb6f6c5b42a77eb15e9f58863dd4 https://www.encodeproject.org/files/ENCFF023REQ/@@download/ENCFF023REQ.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF052HEI bigWig signal p-value ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 777759569 ENCODE Processing Pipeline 12649ff50176ccff6aca9787e616d951 https://www.encodeproject.org/files/ENCFF052HEI/@@download/ENCFF052HEI.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF265RAH bigWig signal p-value ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF044IQW, ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 844051477 ENCODE Processing Pipeline 99e2a97685fd7a4afaa7ce6ce24067ed https://www.encodeproject.org/files/ENCFF265RAH/@@download/ENCFF265RAH.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF827ERW bed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 2418725 ENCODE Processing Pipeline dc7c6180032b290165ebda3099c8d26f https://www.encodeproject.org/files/ENCFF827ERW/@@download/ENCFF827ERW.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF653ZIY bigWig fold change over control ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF044IQW, ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 648983910 ENCODE Processing Pipeline 063d17f4be6bf9d5e55a91676625fadf https://www.encodeproject.org/files/ENCFF653ZIY/@@download/ENCFF653ZIY.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF266CYV bed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF044IQW, ENCFF383IWZ, ENCFF676LVI 4228829 ENCODE Processing Pipeline 4fcdb2a18a3e36bebf5d00b3fc7a392e https://www.encodeproject.org/files/ENCFF266CYV/@@download/ENCFF266CYV.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF283JHG bigWig fold change over control ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF407CBS, ENCFF676LVI 313064856 ENCODE Processing Pipeline 2162fbb77da57bf7e9abb432761d9d42 https://www.encodeproject.org/files/ENCFF283JHG/@@download/ENCFF283JHG.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF294WYU bigWig fold change over control ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF044IQW, ENCFF383IWZ, ENCFF676LVI 429826058 ENCODE Processing Pipeline eb9f55db4d512f7d928619705081545d https://www.encodeproject.org/files/ENCFF294WYU/@@download/ENCFF294WYU.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF961GJK bigBed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF266CYV 8670799 ENCODE Processing Pipeline 028db74e6f3dd69a757d7ec9509a860b https://www.encodeproject.org/files/ENCFF961GJK/@@download/ENCFF961GJK.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF004THG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF023REQ 127056 ENCODE Processing Pipeline 0fbbca6e911bd18ec6fbb1794dee0253 https://www.encodeproject.org/files/ENCFF004THG/@@download/ENCFF004THG.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF712DEF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF972VNL 143644 ENCODE Processing Pipeline 3c99a1bc629a5b491352ecce58c57b50 https://www.encodeproject.org/files/ENCFF712DEF/@@download/ENCFF712DEF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF618DXK bigBed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF827ERW 5635384 ENCODE Processing Pipeline 9c46eff0855fd21244fbf0fbf03676b2 https://www.encodeproject.org/files/ENCFF618DXK/@@download/ENCFF618DXK.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF287AXE bigBed narrowPeak peaks and background as input for IDR ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF974KFZ 11301001 ENCODE Processing Pipeline 0581240037d1a4d8b85e4ced64f62537 https://www.encodeproject.org/files/ENCFF287AXE/@@download/ENCFF287AXE.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF972VNL bed narrowPeak optimal idr thresholded peaks ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF266CYV, ENCFF547MET, ENCFF827ERW, ENCFF974KFZ 55241 ENCODE Processing Pipeline d0e560eda821c03589cef1594aed7215 https://www.encodeproject.org/files/ENCFF972VNL/@@download/ENCFF972VNL.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001LGE bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGS 657181082 Bing Ren, UCSD c2c328ec6d3442c7103c014e8e4a1321 https://www.encodeproject.org/files/ENCFF001LGE/@@download/ENCFF001LGE.bam mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001LGG bigBed broadPeak peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001XZV 222202 Bing Ren, UCSD 13d927dd7f4403dc89d8ea9990f4eae0 https://www.encodeproject.org/files/ENCFF001LGG/@@download/ENCFF001LGG.bigBed mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001LGK bigWig signal ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGE 87568591 Bing Ren, UCSD 7072c1ccf164ce11b0e77e7a79d56f94 https://www.encodeproject.org/files/ENCFF001LGK/@@download/ENCFF001LGK.bigWig mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001LGS fastq reads ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 726466319 Bing Ren, UCSD a9aa109d830884bf1939687de7cc0597 https://www.encodeproject.org/files/ENCFF001LGS/@@download/ENCFF001LGS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYN/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001LGT fastq reads ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 984688995 Bing Ren, UCSD 5cfd5849fd51d13dd45158718c9a146a https://www.encodeproject.org/files/ENCFF001LGT/@@download/ENCFF001LGT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYM/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001XZV bed broadPeak peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGE 114694 Bing Ren, UCSD 1b86524bbbc7f6178920836f5d187ac6 https://www.encodeproject.org/files/ENCFF001XZV/@@download/ENCFF001XZV.bed.gz mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF313CNZ bam unfiltered alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGS, ENCFF018NEO 823209833 ENCODE Processing Pipeline 360c995fdcbb3050712f814ac7f57496 https://www.encodeproject.org/files/ENCFF313CNZ/@@download/ENCFF313CNZ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF364XXK bam unfiltered alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGT, ENCFF018NEO 1098551044 ENCODE Processing Pipeline e5145dbd226c7569072238c9f71a60fb https://www.encodeproject.org/files/ENCFF364XXK/@@download/ENCFF364XXK.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF885KOQ bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGS, ENCFF018NEO 473145811 ENCODE Processing Pipeline de672145d6c570756ed9e92db6c04c1b https://www.encodeproject.org/files/ENCFF885KOQ/@@download/ENCFF885KOQ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF098DDX bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGT, ENCFF018NEO 603235031 ENCODE Processing Pipeline 319605b6214dcca1d392ebf410ab8f02 https://www.encodeproject.org/files/ENCFF098DDX/@@download/ENCFF098DDX.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF641JIL bigWig signal p-value ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF098DDX, ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 348502186 ENCODE Processing Pipeline 27fbbaa8b8228e1c6fba1ec768060689 https://www.encodeproject.org/files/ENCFF641JIL/@@download/ENCFF641JIL.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF779EQA bigWig signal p-value ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF098DDX, ENCFF543ZVH 154931414 ENCODE Processing Pipeline f0c72f8edfa31c14854e0ce514d7ac48 https://www.encodeproject.org/files/ENCFF779EQA/@@download/ENCFF779EQA.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF842ESP bigWig fold change over control ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF098DDX, ENCFF543ZVH 230962197 ENCODE Processing Pipeline 1157665f3bc4fb1e4a54db9d0915fa2e https://www.encodeproject.org/files/ENCFF842ESP/@@download/ENCFF842ESP.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF284DTM bed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 3436575 ENCODE Processing Pipeline f5f3bed528880e1b5b9c2e65bb1f1e0b https://www.encodeproject.org/files/ENCFF284DTM/@@download/ENCFF284DTM.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF813KOA bigWig signal p-value ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 333679413 ENCODE Processing Pipeline 5eb6743ba11c976281d7be44217aa520 https://www.encodeproject.org/files/ENCFF813KOA/@@download/ENCFF813KOA.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF595EFE bigWig fold change over control ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF098DDX, ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 416744810 ENCODE Processing Pipeline 21cee2d0ce12a1631f952a871accae15 https://www.encodeproject.org/files/ENCFF595EFE/@@download/ENCFF595EFE.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF731OCE bed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF098DDX, ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 5035994 ENCODE Processing Pipeline 0c21e539c4e67c91142714e85de308e2 https://www.encodeproject.org/files/ENCFF731OCE/@@download/ENCFF731OCE.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF089MGK bigWig fold change over control ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF885KOQ 183980420 ENCODE Processing Pipeline 1f2290a7bead06df37ce6f15ab29665d https://www.encodeproject.org/files/ENCFF089MGK/@@download/ENCFF089MGK.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF091ZMO bed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF098DDX, ENCFF543ZVH 4283691 ENCODE Processing Pipeline bd77e1ec4bd672dd6b7d1c53fecce1e5 https://www.encodeproject.org/files/ENCFF091ZMO/@@download/ENCFF091ZMO.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF770SPK bigBed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF284DTM 7310582 ENCODE Processing Pipeline 2ed0f0c00fc28614948405f2c66c5b75 https://www.encodeproject.org/files/ENCFF770SPK/@@download/ENCFF770SPK.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF771TYD bed narrowPeak conservative idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF091ZMO, ENCFF284DTM, ENCFF547MET, ENCFF731OCE 191072 ENCODE Processing Pipeline f9a8302aa166c90356c7cf01f76c65b3 https://www.encodeproject.org/files/ENCFF771TYD/@@download/ENCFF771TYD.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF115MYJ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF731OCE 10950140 ENCODE Processing Pipeline 075be51c5c632aeecb059e4e3f337531 https://www.encodeproject.org/files/ENCFF115MYJ/@@download/ENCFF115MYJ.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF866OMH bigBed narrowPeak peaks and background as input for IDR ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF091ZMO 10222450 ENCODE Processing Pipeline 2301dabd564293484a61d1f6d1139a63 https://www.encodeproject.org/files/ENCFF866OMH/@@download/ENCFF866OMH.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF095RQP bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF771TYD 388931 ENCODE Processing Pipeline 805d570633fae19a63db578935d6c8d0 https://www.encodeproject.org/files/ENCFF095RQP/@@download/ENCFF095RQP.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF648DAC bed narrowPeak optimal idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF091ZMO, ENCFF284DTM, ENCFF547MET, ENCFF731OCE 295782 ENCODE Processing Pipeline c8a94e6a8f9e26fb18c92d29736b8c98 https://www.encodeproject.org/files/ENCFF648DAC/@@download/ENCFF648DAC.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF602IVY bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF648DAC 641061 ENCODE Processing Pipeline 41d82652e9f8505d5f24f5a6e4304561 https://www.encodeproject.org/files/ENCFF602IVY/@@download/ENCFF602IVY.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF105EAY fastq reads ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1324825934 Bing Ren, UCSD 3338915731e20b574b9ee9f3b77e7930 SRA:SRR3653036 https://www.encodeproject.org/files/ENCFF105EAY/@@download/ENCFF105EAY.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released mild to moderate bottlenecking ENCFF693VGJ fastq reads ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1718013932 Bing Ren, UCSD 745d54465cf0f639c7383efd7a87a7d8 SRA:SRR3653037 https://www.encodeproject.org/files/ENCFF693VGJ/@@download/ENCFF693VGJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released mild to moderate bottlenecking ENCFF694RET bam alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF693VGJ, ENCFF806TVZ 1462554917 ENCODE Processing Pipeline 5d949e2feb98978f0075414a6508f73e https://www.encodeproject.org/files/ENCFF694RET/@@download/ENCFF694RET.bam mm10-minimal archived mild to moderate bottlenecking ENCFF922YBB bam alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF105EAY, ENCFF806TVZ 1199339045 ENCODE Processing Pipeline c10e95bf6fb6787c2cf50b6e50bc4b3b https://www.encodeproject.org/files/ENCFF922YBB/@@download/ENCFF922YBB.bam mm10-minimal archived mild to moderate bottlenecking ENCFF969ECA bed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF922YBB 1332741 ENCODE Processing Pipeline 7590c8139a8dc22681119566ef5c8df9 https://www.encodeproject.org/files/ENCFF969ECA/@@download/ENCFF969ECA.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF370JZW bed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF694RET, ENCFF922YBB 1678042 ENCODE Processing Pipeline 0399b927cd6cec1e1e0f6c8cba61eabe https://www.encodeproject.org/files/ENCFF370JZW/@@download/ENCFF370JZW.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF270SCE bigBed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF370JZW 4816733 ENCODE Processing Pipeline 7fcd0ba1e8c5e957d431773fdcd48a4c https://www.encodeproject.org/files/ENCFF270SCE/@@download/ENCFF270SCE.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF885QFL bigBed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF890XKX 3334601 ENCODE Processing Pipeline 90071447a0793bf69776d4a8c06a2269 https://www.encodeproject.org/files/ENCFF885QFL/@@download/ENCFF885QFL.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF890XKX bed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF694RET 1421737 ENCODE Processing Pipeline 8a845dfe2a4177d1e48a39ece9232107 https://www.encodeproject.org/files/ENCFF890XKX/@@download/ENCFF890XKX.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF572MCE bigBed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF969ECA 3161047 ENCODE Processing Pipeline 9b6de56c10001cf1bbe685ca9b6abda1 https://www.encodeproject.org/files/ENCFF572MCE/@@download/ENCFF572MCE.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF829KHB bigWig signal p-value ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF922YBB 561981994 ENCODE Processing Pipeline 94448b2a67a5e1dbf8676097b3bb2ba7 https://www.encodeproject.org/files/ENCFF829KHB/@@download/ENCFF829KHB.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF821XNC bigWig signal p-value ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF694RET 637357122 ENCODE Processing Pipeline 2906ee444fc152993c5df55d357c1046 https://www.encodeproject.org/files/ENCFF821XNC/@@download/ENCFF821XNC.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF350WPR bigWig signal p-value ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF694RET, ENCFF922YBB 1086173235 ENCODE Processing Pipeline 97c18e73b06b4c1c850eea397f0fe30c https://www.encodeproject.org/files/ENCFF350WPR/@@download/ENCFF350WPR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF256OWJ bigWig fold change over control ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF922YBB 573495277 ENCODE Processing Pipeline 852be7af263c01b62d229dfd0fac23d8 https://www.encodeproject.org/files/ENCFF256OWJ/@@download/ENCFF256OWJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF427HFT bigWig fold change over control ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF694RET 659468824 ENCODE Processing Pipeline 2ba92d07f1d4fb75251c1627db108c32 https://www.encodeproject.org/files/ENCFF427HFT/@@download/ENCFF427HFT.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF441VLH bigWig fold change over control ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF694RET, ENCFF922YBB 1172108428 ENCODE Processing Pipeline bfa1cb798188dacf6fdbd20e029a4889 https://www.encodeproject.org/files/ENCFF441VLH/@@download/ENCFF441VLH.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF733TXT bigBed narrowPeak replicated peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF790MRF 2822701 ENCODE Processing Pipeline 4305e4589d9f6a16d8134096e80610a1 https://www.encodeproject.org/files/ENCFF733TXT/@@download/ENCFF733TXT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF790MRF bed narrowPeak replicated peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF370JZW, ENCFF890XKX, ENCFF969ECA 1203811 ENCODE Processing Pipeline 617d81864b63613bdce4e4e7819ecb93 https://www.encodeproject.org/files/ENCFF790MRF/@@download/ENCFF790MRF.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF109IBN bam unfiltered alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF693VGJ 2239357063 ENCODE Processing Pipeline 66023a34c9438378d015955fe8c29bab https://www.encodeproject.org/files/ENCFF109IBN/@@download/ENCFF109IBN.bam mm10 released mild to moderate bottlenecking ENCFF395DIX bam unfiltered alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF105EAY 1758962129 ENCODE Processing Pipeline 6e1ba83e44122ec4082a21a72bcc2bcd https://www.encodeproject.org/files/ENCFF395DIX/@@download/ENCFF395DIX.bam mm10 released mild to moderate bottlenecking ENCFF903PGV bam alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF693VGJ 1462269713 ENCODE Processing Pipeline 4115dabb83f1fedfaff46dc5c494de9a https://www.encodeproject.org/files/ENCFF903PGV/@@download/ENCFF903PGV.bam mm10 released mild to moderate bottlenecking ENCFF322HXD bam alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF105EAY 1199110509 ENCODE Processing Pipeline 7e83dc39be57de0ce50cb1628319b7f9 https://www.encodeproject.org/files/ENCFF322HXD/@@download/ENCFF322HXD.bam mm10 released mild to moderate bottlenecking ENCFF515XTW bed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF322HXD, ENCFF652BTE 1314119 ENCODE Processing Pipeline 4f46097957af7e5aae259c76baaaee1f https://www.encodeproject.org/files/ENCFF515XTW/@@download/ENCFF515XTW.bed.gz mm10 released mild to moderate bottlenecking ENCFF564OIR bed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF903PGV 1422636 ENCODE Processing Pipeline c577adef5f8d990bfd9f59ee716105c2 https://www.encodeproject.org/files/ENCFF564OIR/@@download/ENCFF564OIR.bed.gz mm10 released mild to moderate bottlenecking ENCFF267BVS bed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF322HXD, ENCFF652BTE, ENCFF903PGV 1678713 ENCODE Processing Pipeline d475ceed910420fb011353f4bf10df04 https://www.encodeproject.org/files/ENCFF267BVS/@@download/ENCFF267BVS.bed.gz mm10 released mild to moderate bottlenecking ENCFF027GKK bigBed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF515XTW 3120417 ENCODE Processing Pipeline 0214c43c7842d0adbbb94836476f0fbf https://www.encodeproject.org/files/ENCFF027GKK/@@download/ENCFF027GKK.bigBed mm10 released mild to moderate bottlenecking ENCFF901TVY bigBed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF564OIR 3339365 ENCODE Processing Pipeline 13866d737f919816d2d65f6bc311696a https://www.encodeproject.org/files/ENCFF901TVY/@@download/ENCFF901TVY.bigBed mm10 released mild to moderate bottlenecking ENCFF729QQT bigBed narrowPeak peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF267BVS 4818239 ENCODE Processing Pipeline a35477cb174b3a7212493740a8bde6e7 https://www.encodeproject.org/files/ENCFF729QQT/@@download/ENCFF729QQT.bigBed mm10 released mild to moderate bottlenecking ENCFF699RWJ bigWig signal p-value ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF322HXD, ENCFF652BTE 577214316 ENCODE Processing Pipeline d87063f088de76583d8529ece927330b https://www.encodeproject.org/files/ENCFF699RWJ/@@download/ENCFF699RWJ.bigWig mm10 released mild to moderate bottlenecking ENCFF331OVK bigWig signal p-value ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF903PGV 523310955 ENCODE Processing Pipeline 4a242b787ebab7ba44d41e3fe142699e https://www.encodeproject.org/files/ENCFF331OVK/@@download/ENCFF331OVK.bigWig mm10 released mild to moderate bottlenecking ENCFF428GBA bigWig signal p-value ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF322HXD, ENCFF652BTE, ENCFF903PGV 874225402 ENCODE Processing Pipeline e334a1419ae70becb970ecd7273498a7 https://www.encodeproject.org/files/ENCFF428GBA/@@download/ENCFF428GBA.bigWig mm10 released mild to moderate bottlenecking ENCFF056NXG bigWig fold change over control ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF322HXD, ENCFF652BTE 561700656 ENCODE Processing Pipeline a07c32cc8fbcc1229e49cd80533e06f1 https://www.encodeproject.org/files/ENCFF056NXG/@@download/ENCFF056NXG.bigWig mm10 released mild to moderate bottlenecking ENCFF842SJV bigWig fold change over control ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF903PGV 660611922 ENCODE Processing Pipeline fadaec72f21b38b3e67e8ddc3f46a166 https://www.encodeproject.org/files/ENCFF842SJV/@@download/ENCFF842SJV.bigWig mm10 released mild to moderate bottlenecking ENCFF631JYQ bigWig fold change over control ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF322HXD, ENCFF652BTE, ENCFF903PGV 1170344543 ENCODE Processing Pipeline a89179809eaa17f8c4708b8fb79780fb https://www.encodeproject.org/files/ENCFF631JYQ/@@download/ENCFF631JYQ.bigWig mm10 released mild to moderate bottlenecking ENCFF409CQX bed narrowPeak replicated peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF267BVS, ENCFF515XTW, ENCFF564OIR 1197666 ENCODE Processing Pipeline d257fe67c87bb47899a9edd92810c7fc https://www.encodeproject.org/files/ENCFF409CQX/@@download/ENCFF409CQX.bed.gz mm10 released mild to moderate bottlenecking ENCFF869OFE bigBed narrowPeak replicated peaks ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF409CQX 2808882 ENCODE Processing Pipeline 2e2acb130e6c6996f2409fb7be504da7 https://www.encodeproject.org/files/ENCFF869OFE/@@download/ENCFF869OFE.bigBed mm10 released mild to moderate bottlenecking ENCFF002BXA fastq reads ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1311000742 Bing Ren, UCSD 54e43937716a9b0ad93306f7ee3aa0b7 SRA:SRR3651689 https://www.encodeproject.org/files/ENCFF002BXA/@@download/ENCFF002BXA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXZ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF002BWY fastq reads ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1092272958 Bing Ren, UCSD 0003be96771e5777771e28643fdb77bf SRA:SRR3651688 https://www.encodeproject.org/files/ENCFF002BWY/@@download/ENCFF002BWY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXX/ released low read length, mild to moderate bottlenecking, low read depth ENCFF912SOJ bam alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXA, ENCFF806TVZ 980273944 ENCODE Processing Pipeline 35c9cb644dd8e42ed0b67f2a012b4d2b https://www.encodeproject.org/files/ENCFF912SOJ/@@download/ENCFF912SOJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF348GUB bam alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWY, ENCFF806TVZ 836131552 ENCODE Processing Pipeline 5c407f0332059c4182e07fc9dff5c6df https://www.encodeproject.org/files/ENCFF348GUB/@@download/ENCFF348GUB.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF535EOA bed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF348GUB, ENCFF527LXR, ENCFF912SOJ 585492 ENCODE Processing Pipeline 2722b1ae508e5d52604c3ac3f0b9ad66 https://www.encodeproject.org/files/ENCFF535EOA/@@download/ENCFF535EOA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF472HXF bed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF348GUB, ENCFF527LXR 603470 ENCODE Processing Pipeline 8e388ea1e90c7fd79166bc222f5aa335 https://www.encodeproject.org/files/ENCFF472HXF/@@download/ENCFF472HXF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF494YKA bigBed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF432UNI 1857344 ENCODE Processing Pipeline bc76ea218087f961bdd466b137d287fd https://www.encodeproject.org/files/ENCFF494YKA/@@download/ENCFF494YKA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF742IJD bigWig signal p-value ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF348GUB, ENCFF527LXR 376892718 ENCODE Processing Pipeline 6b92388181ac12b300657e3b5f4929a9 https://www.encodeproject.org/files/ENCFF742IJD/@@download/ENCFF742IJD.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF432UNI bed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF912SOJ 609682 ENCODE Processing Pipeline c3ba83083cc80c6652a5b2850d7602db https://www.encodeproject.org/files/ENCFF432UNI/@@download/ENCFF432UNI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF018PLJ bigBed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF472HXF 1833116 ENCODE Processing Pipeline d3dbda18005db00996336f4ba2695c08 https://www.encodeproject.org/files/ENCFF018PLJ/@@download/ENCFF018PLJ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF117ZMP bigBed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF535EOA 1759577 ENCODE Processing Pipeline 78c83eae322dbf31d25cbd45d96d22cd https://www.encodeproject.org/files/ENCFF117ZMP/@@download/ENCFF117ZMP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF522VKJ bigWig signal p-value ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF912SOJ 383024348 ENCODE Processing Pipeline 4ff4d754631472f56c1594ba786d6f6a https://www.encodeproject.org/files/ENCFF522VKJ/@@download/ENCFF522VKJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF536DJY bigWig signal p-value ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF348GUB, ENCFF527LXR, ENCFF912SOJ 442493354 ENCODE Processing Pipeline 5656e0533a36b08b4c80150381ad5533 https://www.encodeproject.org/files/ENCFF536DJY/@@download/ENCFF536DJY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF521DUI bigWig fold change over control ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF912SOJ 381171862 ENCODE Processing Pipeline 0321da8e42834daa112eb06ec78bf02f https://www.encodeproject.org/files/ENCFF521DUI/@@download/ENCFF521DUI.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF566HKJ bigWig fold change over control ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF348GUB, ENCFF527LXR, ENCFF912SOJ 558580990 ENCODE Processing Pipeline 455d1c95b8ceb6b7401b5b572d363406 https://www.encodeproject.org/files/ENCFF566HKJ/@@download/ENCFF566HKJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF457BPC bed narrowPeak replicated peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF432UNI, ENCFF472HXF, ENCFF535EOA 743131 ENCODE Processing Pipeline 0f849186cc006303472cfab9a63ad753 https://www.encodeproject.org/files/ENCFF457BPC/@@download/ENCFF457BPC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF668UQV bigWig fold change over control ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF348GUB, ENCFF527LXR 329498462 ENCODE Processing Pipeline 499aba9e2fe0f646589e4a8d5ee72dda https://www.encodeproject.org/files/ENCFF668UQV/@@download/ENCFF668UQV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF758MXP bigBed narrowPeak replicated peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF457BPC 1698698 ENCODE Processing Pipeline 5089dca29529c9b9eb31a02179820613 https://www.encodeproject.org/files/ENCFF758MXP/@@download/ENCFF758MXP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF538TNH bam unfiltered alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWY, ENCFF018NEO 1291078199 ENCODE Processing Pipeline c9aa83d06503c06825736e65584191fc https://www.encodeproject.org/files/ENCFF538TNH/@@download/ENCFF538TNH.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF306LNT bam unfiltered alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXA, ENCFF018NEO 1550434374 ENCODE Processing Pipeline 3600f1a57a2de374ff1e7aa57a27212f https://www.encodeproject.org/files/ENCFF306LNT/@@download/ENCFF306LNT.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF426YPX bam alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWY, ENCFF018NEO 836015511 ENCODE Processing Pipeline 14949dad8cce46544f770c957bbdce40 https://www.encodeproject.org/files/ENCFF426YPX/@@download/ENCFF426YPX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF972ELN bam alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXA, ENCFF018NEO 980138693 ENCODE Processing Pipeline fbd9b1a8ff6412919ca2a07c3feb565f https://www.encodeproject.org/files/ENCFF972ELN/@@download/ENCFF972ELN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF377APG bed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF426YPX 604420 ENCODE Processing Pipeline 65476fb510ec2f20bfc49e8454e82a42 https://www.encodeproject.org/files/ENCFF377APG/@@download/ENCFF377APG.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF768YMP bed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF972ELN 609168 ENCODE Processing Pipeline 9760eee1b043182540db0b281b4a37a4 https://www.encodeproject.org/files/ENCFF768YMP/@@download/ENCFF768YMP.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF358LOI bed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF426YPX, ENCFF972ELN 585638 ENCODE Processing Pipeline a74a49a4db307dcff2997ca60691f39c https://www.encodeproject.org/files/ENCFF358LOI/@@download/ENCFF358LOI.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF074XUD bigBed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF377APG 1835165 ENCODE Processing Pipeline 3faf158669e7db9e20c21eda7e52a617 https://www.encodeproject.org/files/ENCFF074XUD/@@download/ENCFF074XUD.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF521FTN bigBed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF358LOI 1756123 ENCODE Processing Pipeline 81cd042873ab6056c62d9530e5d98c65 https://www.encodeproject.org/files/ENCFF521FTN/@@download/ENCFF521FTN.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF435KWB bigBed narrowPeak peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF768YMP 1858486 ENCODE Processing Pipeline be1cab4952dc91e7836837151af0a576 https://www.encodeproject.org/files/ENCFF435KWB/@@download/ENCFF435KWB.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF915IUB bigWig signal p-value ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF426YPX 367464813 ENCODE Processing Pipeline 5407068420b453eeb2ab9f58909d5f72 https://www.encodeproject.org/files/ENCFF915IUB/@@download/ENCFF915IUB.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF976MRM bigWig signal p-value ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF972ELN 392563892 ENCODE Processing Pipeline 157ffbe85a9421220567292869069a21 https://www.encodeproject.org/files/ENCFF976MRM/@@download/ENCFF976MRM.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF470QTZ bigWig signal p-value ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF426YPX, ENCFF972ELN 444668442 ENCODE Processing Pipeline 10e8c6e075a1a5f321ae575c291cba00 https://www.encodeproject.org/files/ENCFF470QTZ/@@download/ENCFF470QTZ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF899DZD bigWig fold change over control ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF426YPX 330679257 ENCODE Processing Pipeline 16b770f9eadbb248747f60eafc26be28 https://www.encodeproject.org/files/ENCFF899DZD/@@download/ENCFF899DZD.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF107XYO bigWig fold change over control ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF972ELN 380264344 ENCODE Processing Pipeline 694d3d71c4bbcdaa804d04e8c384b9df https://www.encodeproject.org/files/ENCFF107XYO/@@download/ENCFF107XYO.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF315VST bigWig fold change over control ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF426YPX, ENCFF972ELN 562941491 ENCODE Processing Pipeline 5779fa798639248009b8d6af9bdd1daf https://www.encodeproject.org/files/ENCFF315VST/@@download/ENCFF315VST.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF252RRE bed narrowPeak replicated peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF358LOI, ENCFF377APG, ENCFF768YMP 739876 ENCODE Processing Pipeline c2d38c9021186aeeed41c2928248adb7 https://www.encodeproject.org/files/ENCFF252RRE/@@download/ENCFF252RRE.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF097CVH bigBed narrowPeak replicated peaks ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF252RRE 1693308 ENCODE Processing Pipeline 25b7d742ebb8b8950eb6b3a6dd92f95f https://www.encodeproject.org/files/ENCFF097CVH/@@download/ENCFF097CVH.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF557BAE fastq reads ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1764608665 Bing Ren, UCSD ff496a6ffe99195964da92bb2a149336 SRA:SRR3653410 https://www.encodeproject.org/files/ENCFF557BAE/@@download/ENCFF557BAE.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF125ETQ fastq reads ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 3 50 single-ended 90139183 Bing Ren, UCSD 445866b63eca7b31b9736e5a3e50f0cd SRA:SRR3653412 https://www.encodeproject.org/files/ENCFF125ETQ/@@download/ENCFF125ETQ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF066LAE fastq reads ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 507014976 Bing Ren, UCSD 72b5ffaa43e176ea2dff21eecf10b83c SRA:SRR3653411 https://www.encodeproject.org/files/ENCFF066LAE/@@download/ENCFF066LAE.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF078PNM fastq reads ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1522292663 Bing Ren, UCSD a71ddb3c5ec5a73da8657493d1a27d6c SRA:SRR3653413 https://www.encodeproject.org/files/ENCFF078PNM/@@download/ENCFF078PNM.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF202WAI fastq reads ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 420806799 Bing Ren, UCSD 3d7330fae0d0d1d8b5eb4b55b04cb236 SRA:SRR3653414 https://www.encodeproject.org/files/ENCFF202WAI/@@download/ENCFF202WAI.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF405EMM bam alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF066LAE, ENCFF557BAE, ENCFF806TVZ 2253523726 ENCODE Processing Pipeline 3b57080afc3b4262d118f86813837d6f https://www.encodeproject.org/files/ENCFF405EMM/@@download/ENCFF405EMM.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF986JLW bam alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF078PNM, ENCFF125ETQ, ENCFF202WAI, ENCFF806TVZ 2038882912 ENCODE Processing Pipeline 53e270d03df7c0a77970cd7880943e35 https://www.encodeproject.org/files/ENCFF986JLW/@@download/ENCFF986JLW.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF099RDR bam unfiltered alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF018NEO, ENCFF066LAE, ENCFF557BAE 3131732961 ENCODE Processing Pipeline 3f4db01d9ea8061969ba4cadf024d95d https://www.encodeproject.org/files/ENCFF099RDR/@@download/ENCFF099RDR.bam mm10 released sequencing runs labeled as technical replicates ENCFF676WET bam unfiltered alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF018NEO, ENCFF078PNM, ENCFF125ETQ, ENCFF202WAI 2825953162 ENCODE Processing Pipeline 216d4f2eb9842aab185a2edf75f65ead https://www.encodeproject.org/files/ENCFF676WET/@@download/ENCFF676WET.bam mm10 released sequencing runs labeled as technical replicates ENCFF614XRG bam alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF066LAE, ENCFF557BAE 2252996974 ENCODE Processing Pipeline c1f910d70f9566b73025d6255ff61306 https://www.encodeproject.org/files/ENCFF614XRG/@@download/ENCFF614XRG.bam mm10 released sequencing runs labeled as technical replicates ENCFF970FNZ bam alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF078PNM, ENCFF125ETQ, ENCFF202WAI 2038395489 ENCODE Processing Pipeline 9ba0108e151ce1018db6f17e27085988 https://www.encodeproject.org/files/ENCFF970FNZ/@@download/ENCFF970FNZ.bam mm10 released sequencing runs labeled as technical replicates ENCFF808TMS fastq reads ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 977086497 Bing Ren, UCSD 0fc0c11117721df152e5ae5b9f06ffd8 SRA:SRR3651511 https://www.encodeproject.org/files/ENCFF808TMS/@@download/ENCFF808TMS.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/, /files/ENCFF788YDC/ released mild to moderate bottlenecking ENCFF330LYD fastq reads ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1651394121 Bing Ren, UCSD b54aa0f49883c163903ff72e459f8f52 SRA:SRR3651510 https://www.encodeproject.org/files/ENCFF330LYD/@@download/ENCFF330LYD.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released mild to moderate bottlenecking ENCFF367XZM bam alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF808TMS 950569555 ENCODE Processing Pipeline 63dbb89348315d3281bce226d32b325b https://www.encodeproject.org/files/ENCFF367XZM/@@download/ENCFF367XZM.bam mm10-minimal archived mild to moderate bottlenecking ENCFF315ILC bam alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF330LYD, ENCFF806TVZ 1506302839 ENCODE Processing Pipeline 243503c98a1db2aa873cfe2adad8592f https://www.encodeproject.org/files/ENCFF315ILC/@@download/ENCFF315ILC.bam mm10-minimal archived mild to moderate bottlenecking ENCFF695ROM bed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF367XZM, ENCFF950FXV 972100 ENCODE Processing Pipeline 965fc36250a1b47f0df2d669321667eb https://www.encodeproject.org/files/ENCFF695ROM/@@download/ENCFF695ROM.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF390MXB bed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF315ILC, ENCFF367XZM, ENCFF670KZF, ENCFF950FXV 1384056 ENCODE Processing Pipeline e0985361fa4208c05fb71d10f2057650 https://www.encodeproject.org/files/ENCFF390MXB/@@download/ENCFF390MXB.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF630WCY bigBed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF695ROM 2410059 ENCODE Processing Pipeline 784d678f6e76497c74b50f9175885fb7 https://www.encodeproject.org/files/ENCFF630WCY/@@download/ENCFF630WCY.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF767YYP bigBed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF390MXB 3198959 ENCODE Processing Pipeline b95bc00664d298c2a95cb15c4f12e810 https://www.encodeproject.org/files/ENCFF767YYP/@@download/ENCFF767YYP.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF354LVC bigBed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF092YPI 2662497 ENCODE Processing Pipeline f292cbf8d249f5aa60042d65e7c5923f https://www.encodeproject.org/files/ENCFF354LVC/@@download/ENCFF354LVC.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF092YPI bed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF315ILC, ENCFF670KZF 1092348 ENCODE Processing Pipeline 263d97ad351edd0ae60722e89fe298a8 https://www.encodeproject.org/files/ENCFF092YPI/@@download/ENCFF092YPI.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF113OSB bigWig signal p-value ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF367XZM, ENCFF950FXV 591520187 ENCODE Processing Pipeline 767adb7b50c99f93bf2f7fe3cde27d16 https://www.encodeproject.org/files/ENCFF113OSB/@@download/ENCFF113OSB.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF572BEC bigWig signal p-value ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF315ILC, ENCFF670KZF 661013299 ENCODE Processing Pipeline e0a98ed96d5bdf9e185ee55c7725a0a9 https://www.encodeproject.org/files/ENCFF572BEC/@@download/ENCFF572BEC.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF253JDT bigWig signal p-value ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF315ILC, ENCFF367XZM, ENCFF670KZF, ENCFF950FXV 914009744 ENCODE Processing Pipeline 6127d219c80863f58c32f6ba7c26ceed https://www.encodeproject.org/files/ENCFF253JDT/@@download/ENCFF253JDT.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF733MGW bigWig fold change over control ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF367XZM, ENCFF950FXV 501267993 ENCODE Processing Pipeline 1bb203d0ad75a30ea2c6f27d2b8b1042 https://www.encodeproject.org/files/ENCFF733MGW/@@download/ENCFF733MGW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF440ZZI bigWig fold change over control ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF315ILC, ENCFF670KZF 679494766 ENCODE Processing Pipeline 6ea155d054f78fb51350fc36ac5d243b https://www.encodeproject.org/files/ENCFF440ZZI/@@download/ENCFF440ZZI.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF789BRL bigWig fold change over control ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF315ILC, ENCFF367XZM, ENCFF670KZF, ENCFF950FXV 1072751275 ENCODE Processing Pipeline 229aad2d503a0208ff7ed59ff2bbad78 https://www.encodeproject.org/files/ENCFF789BRL/@@download/ENCFF789BRL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF557AZU bed narrowPeak replicated peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF092YPI, ENCFF390MXB, ENCFF695ROM 723105 ENCODE Processing Pipeline 74940e5230e7c24a78940e544309c05a https://www.encodeproject.org/files/ENCFF557AZU/@@download/ENCFF557AZU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF923RUD bigBed narrowPeak replicated peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF557AZU 1829551 ENCODE Processing Pipeline 414fb507a9d23100b282741e7fa9ad05 https://www.encodeproject.org/files/ENCFF923RUD/@@download/ENCFF923RUD.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF221OMU bam unfiltered alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF330LYD 2203661244 ENCODE Processing Pipeline 84316fec479480b57d1bf337b174ccaf https://www.encodeproject.org/files/ENCFF221OMU/@@download/ENCFF221OMU.bam mm10 released mild to moderate bottlenecking ENCFF472PUD bam alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF808TMS 950336476 ENCODE Processing Pipeline c51fe1519cfe62f1408264518cab3e2e https://www.encodeproject.org/files/ENCFF472PUD/@@download/ENCFF472PUD.bam mm10 released mild to moderate bottlenecking ENCFF174IUF bam unfiltered alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF808TMS 1336845339 ENCODE Processing Pipeline e100cbe89d164934aa19068a82f120f4 https://www.encodeproject.org/files/ENCFF174IUF/@@download/ENCFF174IUF.bam mm10 released mild to moderate bottlenecking ENCFF979RFA bam alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF330LYD 1505963768 ENCODE Processing Pipeline bdf00681e5c4eff3fe1b43fe6df67006 https://www.encodeproject.org/files/ENCFF979RFA/@@download/ENCFF979RFA.bam mm10 released mild to moderate bottlenecking ENCFF095HDD bed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF472PUD, ENCFF563KVK 972562 ENCODE Processing Pipeline f51fb02947d93b722fb469d70edd278e https://www.encodeproject.org/files/ENCFF095HDD/@@download/ENCFF095HDD.bed.gz mm10 released mild to moderate bottlenecking ENCFF182JUG bigBed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF095HDD 2411555 ENCODE Processing Pipeline 20cf54155ef373ae57a623789d211183 https://www.encodeproject.org/files/ENCFF182JUG/@@download/ENCFF182JUG.bigBed mm10 released mild to moderate bottlenecking ENCFF458OLA bed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF741BBU, ENCFF979RFA 1066057 ENCODE Processing Pipeline 982cfc13fdcefee4c48fa360936e5a49 https://www.encodeproject.org/files/ENCFF458OLA/@@download/ENCFF458OLA.bed.gz mm10 released mild to moderate bottlenecking ENCFF761XQC bed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF472PUD, ENCFF563KVK, ENCFF741BBU, ENCFF979RFA 1384392 ENCODE Processing Pipeline c0d2a3fb5e908d894b5bbae3b29482ba https://www.encodeproject.org/files/ENCFF761XQC/@@download/ENCFF761XQC.bed.gz mm10 released mild to moderate bottlenecking ENCFF100LZE bigBed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF458OLA 2604468 ENCODE Processing Pipeline 16ad9ab6572090d6419b6c6d04b475cd https://www.encodeproject.org/files/ENCFF100LZE/@@download/ENCFF100LZE.bigBed mm10 released mild to moderate bottlenecking ENCFF151ICU bigBed narrowPeak peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF761XQC 3200263 ENCODE Processing Pipeline 631c9826469800d6d4018a42b5a741f5 https://www.encodeproject.org/files/ENCFF151ICU/@@download/ENCFF151ICU.bigBed mm10 released mild to moderate bottlenecking ENCFF346DWV bigWig signal p-value ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF472PUD, ENCFF563KVK 486331983 ENCODE Processing Pipeline f8ac70995843d2142c8b382077b01e71 https://www.encodeproject.org/files/ENCFF346DWV/@@download/ENCFF346DWV.bigWig mm10 released mild to moderate bottlenecking ENCFF066DPZ bigWig signal p-value ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF741BBU, ENCFF979RFA 554671873 ENCODE Processing Pipeline c7c6ff2db8d06de6ce9f182a841b5fe6 https://www.encodeproject.org/files/ENCFF066DPZ/@@download/ENCFF066DPZ.bigWig mm10 released mild to moderate bottlenecking ENCFF210QUL bigWig signal p-value ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF472PUD, ENCFF563KVK, ENCFF741BBU, ENCFF979RFA 978548877 ENCODE Processing Pipeline 13d0f20cd0074e98c0229c5653d695a5 https://www.encodeproject.org/files/ENCFF210QUL/@@download/ENCFF210QUL.bigWig mm10 released mild to moderate bottlenecking ENCFF961YJE bigWig fold change over control ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF472PUD, ENCFF563KVK 499251731 ENCODE Processing Pipeline ad2ced7799ae1c4c4c693727aeb5dab5 https://www.encodeproject.org/files/ENCFF961YJE/@@download/ENCFF961YJE.bigWig mm10 released mild to moderate bottlenecking ENCFF726QRP bigWig fold change over control ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF741BBU, ENCFF979RFA 672397554 ENCODE Processing Pipeline 846ec089f034049b5f4ecdddb992672a https://www.encodeproject.org/files/ENCFF726QRP/@@download/ENCFF726QRP.bigWig mm10 released mild to moderate bottlenecking ENCFF111SQJ bigWig fold change over control ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF472PUD, ENCFF563KVK, ENCFF741BBU, ENCFF979RFA 1071965085 ENCODE Processing Pipeline f8787b9aace1ec51ba42a1430e10cf59 https://www.encodeproject.org/files/ENCFF111SQJ/@@download/ENCFF111SQJ.bigWig mm10 released mild to moderate bottlenecking ENCFF572YAQ bed narrowPeak replicated peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF095HDD, ENCFF458OLA, ENCFF761XQC 731806 ENCODE Processing Pipeline 08002790f01df470388851db6603c5f7 https://www.encodeproject.org/files/ENCFF572YAQ/@@download/ENCFF572YAQ.bed.gz mm10 released mild to moderate bottlenecking ENCFF891TZR bigBed narrowPeak replicated peaks ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF572YAQ 1851611 ENCODE Processing Pipeline 17dad1995aff16a4d05835e287c47e37 https://www.encodeproject.org/files/ENCFF891TZR/@@download/ENCFF891TZR.bigBed mm10 released mild to moderate bottlenecking ENCFF116RSC fastq reads ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 555174934 Bing Ren, UCSD 23ff6324e13af71266f71028cd8de775 SRA:SRR3652996 https://www.encodeproject.org/files/ENCFF116RSC/@@download/ENCFF116RSC.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released sequencing runs labeled as technical replicates ENCFF386JTQ fastq reads ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1528861787 Bing Ren, UCSD c03158d5f9473b081f9e92f2046f967d SRA:SRR3652997 https://www.encodeproject.org/files/ENCFF386JTQ/@@download/ENCFF386JTQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released sequencing runs labeled as technical replicates ENCFF341QIR fastq reads ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1824113123 Bing Ren, UCSD e95dfb4491122d885932659c5e945125 SRA:SRR3652995 https://www.encodeproject.org/files/ENCFF341QIR/@@download/ENCFF341QIR.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released sequencing runs labeled as technical replicates ENCFF016NAN bam alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF116RSC, ENCFF386JTQ, ENCFF806TVZ 2158084416 ENCODE Processing Pipeline e698b3b08d1f0102b0db60c84e732a3f https://www.encodeproject.org/files/ENCFF016NAN/@@download/ENCFF016NAN.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF074CEE bam alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF341QIR, ENCFF806TVZ 1890082439 ENCODE Processing Pipeline 5d680f3055c89dd96f65f9d8e4535f41 https://www.encodeproject.org/files/ENCFF074CEE/@@download/ENCFF074CEE.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF854NSR bed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF016NAN, ENCFF074CEE, ENCFF120NRT, ENCFF171GAD 3477801 ENCODE Processing Pipeline c08e41b36618c4c97a6dc9ffaf359f63 https://www.encodeproject.org/files/ENCFF854NSR/@@download/ENCFF854NSR.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF741CSB bed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF074CEE, ENCFF171GAD 2828471 ENCODE Processing Pipeline b22144bea0cf404031c1d551305431e3 https://www.encodeproject.org/files/ENCFF741CSB/@@download/ENCFF741CSB.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF118QDB bigBed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF854NSR 8710935 ENCODE Processing Pipeline d1b0f0f3958b4e9f6aaf6b6b934307ef https://www.encodeproject.org/files/ENCFF118QDB/@@download/ENCFF118QDB.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF360BZZ bed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF016NAN, ENCFF120NRT 2599888 ENCODE Processing Pipeline 150fa78d75c5bbee9e7ed7030fa59cd3 https://www.encodeproject.org/files/ENCFF360BZZ/@@download/ENCFF360BZZ.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF598VBW bigBed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF360BZZ 6765213 ENCODE Processing Pipeline 59b66a9428b69e75c72e218032372eae https://www.encodeproject.org/files/ENCFF598VBW/@@download/ENCFF598VBW.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF664UTY bigBed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF741CSB 7118927 ENCODE Processing Pipeline 85b593246592c8987705660673de4377 https://www.encodeproject.org/files/ENCFF664UTY/@@download/ENCFF664UTY.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF402BUH bigWig signal p-value ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF016NAN, ENCFF120NRT 957102613 ENCODE Processing Pipeline 74d51e1683de228c33754897257b5d54 https://www.encodeproject.org/files/ENCFF402BUH/@@download/ENCFF402BUH.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF585MIM bigWig signal p-value ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF074CEE, ENCFF171GAD 893911544 ENCODE Processing Pipeline 26b7c2dc5e958db6f62ad2df2f94d508 https://www.encodeproject.org/files/ENCFF585MIM/@@download/ENCFF585MIM.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF957HVT bigWig signal p-value ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF016NAN, ENCFF074CEE, ENCFF120NRT, ENCFF171GAD 1581650029 ENCODE Processing Pipeline b22f422f41d517cce00c27f8b3f4a9cd https://www.encodeproject.org/files/ENCFF957HVT/@@download/ENCFF957HVT.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF772VOT bigWig fold change over control ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF016NAN, ENCFF120NRT 1016414580 ENCODE Processing Pipeline f8335862e6a8213f3caae64eeff2bd21 https://www.encodeproject.org/files/ENCFF772VOT/@@download/ENCFF772VOT.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF670OYT bigWig fold change over control ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF074CEE, ENCFF171GAD 846764749 ENCODE Processing Pipeline 17e46364d72bd1bb1aec57f0e3fb66e3 https://www.encodeproject.org/files/ENCFF670OYT/@@download/ENCFF670OYT.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF674CSD bed narrowPeak replicated peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF360BZZ, ENCFF741CSB, ENCFF854NSR 2717466 ENCODE Processing Pipeline 866de377f62947d4d724cc4cfcdb02fe https://www.encodeproject.org/files/ENCFF674CSD/@@download/ENCFF674CSD.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF327IXB bigWig fold change over control ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF016NAN, ENCFF074CEE, ENCFF120NRT, ENCFF171GAD 1665986792 ENCODE Processing Pipeline 0f1fcab93bc52ac4f80491b814f42329 https://www.encodeproject.org/files/ENCFF327IXB/@@download/ENCFF327IXB.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF048PLZ bigBed narrowPeak replicated peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF674CSD 4945221 ENCODE Processing Pipeline 43280912ec9ef2e23da2e25306cf9035 https://www.encodeproject.org/files/ENCFF048PLZ/@@download/ENCFF048PLZ.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF334SIE bam unfiltered alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF116RSC, ENCFF386JTQ 2772341941 ENCODE Processing Pipeline 089021016077b2032cdd747abc478431 https://www.encodeproject.org/files/ENCFF334SIE/@@download/ENCFF334SIE.bam mm10 released sequencing runs labeled as technical replicates ENCFF788JMC bam alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF116RSC, ENCFF386JTQ 2157676604 ENCODE Processing Pipeline 6a4c46cab34ecf2bf0d64a053ea8037e https://www.encodeproject.org/files/ENCFF788JMC/@@download/ENCFF788JMC.bam mm10 released sequencing runs labeled as technical replicates ENCFF492JKQ bam unfiltered alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF341QIR 2408109473 ENCODE Processing Pipeline 576268fe0829bf78bfa799e7f04eada6 https://www.encodeproject.org/files/ENCFF492JKQ/@@download/ENCFF492JKQ.bam mm10 released sequencing runs labeled as technical replicates ENCFF340ACH bam alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF341QIR 1889737648 ENCODE Processing Pipeline 57163fbf7a57ab86d403041ba67e1e4a https://www.encodeproject.org/files/ENCFF340ACH/@@download/ENCFF340ACH.bam mm10 released sequencing runs labeled as technical replicates ENCFF515YWO bed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF788JMC, ENCFF865QGZ 2602526 ENCODE Processing Pipeline c8b3144195f8f3b254c0eb9d7aba85f6 https://www.encodeproject.org/files/ENCFF515YWO/@@download/ENCFF515YWO.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF606FAN bed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF340ACH, ENCFF438RYK 2829487 ENCODE Processing Pipeline 77d94307461747d7dd1fe97ce816733b https://www.encodeproject.org/files/ENCFF606FAN/@@download/ENCFF606FAN.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF570YQD bed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF340ACH, ENCFF438RYK, ENCFF788JMC, ENCFF865QGZ 3350740 ENCODE Processing Pipeline 2c7c41d76f32bf3121becdb1911c1f46 https://www.encodeproject.org/files/ENCFF570YQD/@@download/ENCFF570YQD.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF235XXG bigBed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF515YWO 6756914 ENCODE Processing Pipeline 5fc486935e0a702a27393229af6444c0 https://www.encodeproject.org/files/ENCFF235XXG/@@download/ENCFF235XXG.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF085LJS bigBed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF606FAN 7120232 ENCODE Processing Pipeline a30bf67d3cdb6a16e346e8295b69c950 https://www.encodeproject.org/files/ENCFF085LJS/@@download/ENCFF085LJS.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF383YLT bigBed narrowPeak peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF570YQD 8418440 ENCODE Processing Pipeline f5f39cbee5bf74075e25e4c8eaf13181 https://www.encodeproject.org/files/ENCFF383YLT/@@download/ENCFF383YLT.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF716SHQ bigWig signal p-value ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF788JMC, ENCFF865QGZ 748006448 ENCODE Processing Pipeline 5f3ad9aed4c9acfe383b58c78804f3f0 https://www.encodeproject.org/files/ENCFF716SHQ/@@download/ENCFF716SHQ.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF178IIN bigWig signal p-value ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF340ACH, ENCFF438RYK 661774783 ENCODE Processing Pipeline 08a26e72c84d67f324d223dabff843d2 https://www.encodeproject.org/files/ENCFF178IIN/@@download/ENCFF178IIN.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF741WSQ bigWig signal p-value ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF340ACH, ENCFF438RYK, ENCFF788JMC, ENCFF865QGZ 1396857586 ENCODE Processing Pipeline a2a68540797b31a9d914b2f9f266f2bb https://www.encodeproject.org/files/ENCFF741WSQ/@@download/ENCFF741WSQ.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF827COS bigWig fold change over control ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF788JMC, ENCFF865QGZ 980934607 ENCODE Processing Pipeline 63236d28b0d2a8fea95a15a94cea2630 https://www.encodeproject.org/files/ENCFF827COS/@@download/ENCFF827COS.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF656QYV bigWig fold change over control ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF340ACH, ENCFF438RYK 848505250 ENCODE Processing Pipeline a8a6bad0c9b306872e551334aa820300 https://www.encodeproject.org/files/ENCFF656QYV/@@download/ENCFF656QYV.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF335NBL bigWig fold change over control ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF340ACH, ENCFF438RYK, ENCFF788JMC, ENCFF865QGZ 1705773305 ENCODE Processing Pipeline 79ec6e2da5dac176974c26623cca015a https://www.encodeproject.org/files/ENCFF335NBL/@@download/ENCFF335NBL.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF034TNU bed narrowPeak replicated peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF515YWO, ENCFF570YQD, ENCFF606FAN 2734293 ENCODE Processing Pipeline 538edb8f4d9ec7e95f24aa6e75f7ebe5 https://www.encodeproject.org/files/ENCFF034TNU/@@download/ENCFF034TNU.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF288HTJ bigBed narrowPeak replicated peaks ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF034TNU 4962309 ENCODE Processing Pipeline d5c8e948aca54fe2d35166bfe96377ee https://www.encodeproject.org/files/ENCFF288HTJ/@@download/ENCFF288HTJ.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF002AJO fastq reads ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1149863065 Bing Ren, UCSD 8797a25731aaf94c6f02d6cff6877007 SRA:SRR3651235 https://www.encodeproject.org/files/ENCFF002AJO/@@download/ENCFF002AJO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQM/ released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF002AJQ fastq reads ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1423358018 Bing Ren, UCSD 29962cb008cbafca489511083b5eabf8 SRA:SRR3651234 https://www.encodeproject.org/files/ENCFF002AJQ/@@download/ENCFF002AJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF929OFY bam alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJO, ENCFF806TVZ 931530563 ENCODE Processing Pipeline e9158cfd16a91ff1bd18b2881f1da98d https://www.encodeproject.org/files/ENCFF929OFY/@@download/ENCFF929OFY.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF617CCN bam alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJQ, ENCFF806TVZ 1270772502 ENCODE Processing Pipeline 0878bced892797715b6dd32587a41283 https://www.encodeproject.org/files/ENCFF617CCN/@@download/ENCFF617CCN.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF649GBL bed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF617CCN, ENCFF790TLG, ENCFF929OFY, ENCFF988JQL 2014527 ENCODE Processing Pipeline cda8c69a46d3fcdc757a5e0190786c76 https://www.encodeproject.org/files/ENCFF649GBL/@@download/ENCFF649GBL.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF430VGX bigBed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF881TJK 4800364 ENCODE Processing Pipeline 1551080ab22bcf619c23a1539c3eb622 https://www.encodeproject.org/files/ENCFF430VGX/@@download/ENCFF430VGX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF323FRT bigWig signal p-value ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF790TLG, ENCFF929OFY 375744202 ENCODE Processing Pipeline f646c6a7ef4eca91c26589cee9946c3b https://www.encodeproject.org/files/ENCFF323FRT/@@download/ENCFF323FRT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF881TJK bed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF617CCN, ENCFF790TLG, ENCFF988JQL 2189812 ENCODE Processing Pipeline cb3757d7f634d11ed2fb14ab7571266e https://www.encodeproject.org/files/ENCFF881TJK/@@download/ENCFF881TJK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF201VNB bed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF790TLG, ENCFF929OFY 1842803 ENCODE Processing Pipeline ff500217d70cffa91ff82c5f7e91eb70 https://www.encodeproject.org/files/ENCFF201VNB/@@download/ENCFF201VNB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF704SGX bigBed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF201VNB 4057669 ENCODE Processing Pipeline 77427cb1d8e0c20c6c63b935ec6a3986 https://www.encodeproject.org/files/ENCFF704SGX/@@download/ENCFF704SGX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF331KCW bigBed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF649GBL 5669092 ENCODE Processing Pipeline b4b020456d61ccf9c6ca1a5ce8752fa2 https://www.encodeproject.org/files/ENCFF331KCW/@@download/ENCFF331KCW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF934CZA bigWig signal p-value ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF617CCN, ENCFF790TLG, ENCFF988JQL 585274086 ENCODE Processing Pipeline c22553a07e3c170a5e14fcc9dd744dd4 https://www.encodeproject.org/files/ENCFF934CZA/@@download/ENCFF934CZA.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF790LQX bigWig signal p-value ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF617CCN, ENCFF790TLG, ENCFF929OFY, ENCFF988JQL 831273963 ENCODE Processing Pipeline 2161d1e80a44bdfa4038da8179333a22 https://www.encodeproject.org/files/ENCFF790LQX/@@download/ENCFF790LQX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF363CUH bigWig fold change over control ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF617CCN, ENCFF790TLG, ENCFF988JQL 614860416 ENCODE Processing Pipeline 405fd54b38724857301811e5e7591453 https://www.encodeproject.org/files/ENCFF363CUH/@@download/ENCFF363CUH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF970LHF bigWig fold change over control ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF790TLG, ENCFF929OFY 417827123 ENCODE Processing Pipeline 97bb5023509a576cb646c3241c00c323 https://www.encodeproject.org/files/ENCFF970LHF/@@download/ENCFF970LHF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF261CIB bigWig fold change over control ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF617CCN, ENCFF790TLG, ENCFF929OFY, ENCFF988JQL 913738806 ENCODE Processing Pipeline 19934476ea1971f875869e2cdf7bd029 https://www.encodeproject.org/files/ENCFF261CIB/@@download/ENCFF261CIB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF833HEI bed narrowPeak replicated peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF201VNB, ENCFF649GBL, ENCFF881TJK 1601601 ENCODE Processing Pipeline d568b21eccae796b2fa6597f396054d6 https://www.encodeproject.org/files/ENCFF833HEI/@@download/ENCFF833HEI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF274JBM bigBed narrowPeak replicated peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF833HEI 3774004 ENCODE Processing Pipeline bca1107a45db416d529a3cc61c4f732c https://www.encodeproject.org/files/ENCFF274JBM/@@download/ENCFF274JBM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF814XRP bam unfiltered alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJQ, ENCFF018NEO 1644953077 ENCODE Processing Pipeline ff45b2ba1ecbf8d64335e87f8a092b0d https://www.encodeproject.org/files/ENCFF814XRP/@@download/ENCFF814XRP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF778VHZ bam unfiltered alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJO, ENCFF018NEO 1311380211 ENCODE Processing Pipeline df7f839d7e1394b16a42111cca573b7b https://www.encodeproject.org/files/ENCFF778VHZ/@@download/ENCFF778VHZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF345AQI bam alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJO, ENCFF018NEO 931367600 ENCODE Processing Pipeline 59d82df25c5f66793671f883f8af18ec https://www.encodeproject.org/files/ENCFF345AQI/@@download/ENCFF345AQI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF212KHM bam alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJQ, ENCFF018NEO 1270554292 ENCODE Processing Pipeline b417c215c365f0c895a29b1a7482d3a3 https://www.encodeproject.org/files/ENCFF212KHM/@@download/ENCFF212KHM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF646KDW bed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF212KHM, ENCFF568CQH, ENCFF621MOH 2229909 ENCODE Processing Pipeline 1bb8f55d54ae32d2112ada0c98495d30 https://www.encodeproject.org/files/ENCFF646KDW/@@download/ENCFF646KDW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF598KIL bed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF345AQI, ENCFF621MOH 1827967 ENCODE Processing Pipeline c2c20aeded42243d5dfdbeedb2368035 https://www.encodeproject.org/files/ENCFF598KIL/@@download/ENCFF598KIL.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF179RKW bed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF212KHM, ENCFF345AQI, ENCFF568CQH, ENCFF621MOH 2029248 ENCODE Processing Pipeline 4eac00001e6b2a28ef5afd5dabad8acc https://www.encodeproject.org/files/ENCFF179RKW/@@download/ENCFF179RKW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF577XYB bigBed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF646KDW 4842247 ENCODE Processing Pipeline 18b285e44ef6dc8bdea7fec924af12a1 https://www.encodeproject.org/files/ENCFF577XYB/@@download/ENCFF577XYB.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF493ZRU bigBed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF598KIL 4035297 ENCODE Processing Pipeline e57045a26d6543838052977dcfbd57eb https://www.encodeproject.org/files/ENCFF493ZRU/@@download/ENCFF493ZRU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF423NYJ bigBed narrowPeak peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF179RKW 5693441 ENCODE Processing Pipeline 0fdf7af0a773a9d6e5d282ad6e848df9 https://www.encodeproject.org/files/ENCFF423NYJ/@@download/ENCFF423NYJ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF789FKU bigWig signal p-value ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF212KHM, ENCFF568CQH, ENCFF621MOH 606301581 ENCODE Processing Pipeline 38241a6007ccbe4be09c686e1512eff0 https://www.encodeproject.org/files/ENCFF789FKU/@@download/ENCFF789FKU.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF125PIT bigWig signal p-value ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF345AQI, ENCFF621MOH 341365723 ENCODE Processing Pipeline 2aed524668e79bba195236b449776fbe https://www.encodeproject.org/files/ENCFF125PIT/@@download/ENCFF125PIT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF498PDG bigWig signal p-value ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF212KHM, ENCFF345AQI, ENCFF568CQH, ENCFF621MOH 775582233 ENCODE Processing Pipeline 9b03be16cdfe3091324b50a740a13fce https://www.encodeproject.org/files/ENCFF498PDG/@@download/ENCFF498PDG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF370ENO bigWig fold change over control ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF212KHM, ENCFF568CQH, ENCFF621MOH 617159360 ENCODE Processing Pipeline 952f84200c34b7c746b493fb2a3d70b4 https://www.encodeproject.org/files/ENCFF370ENO/@@download/ENCFF370ENO.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF327MIK bigWig fold change over control ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF345AQI, ENCFF621MOH 413260996 ENCODE Processing Pipeline c05101b0ae9d9eb32f5ae43cef1a8d55 https://www.encodeproject.org/files/ENCFF327MIK/@@download/ENCFF327MIK.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF044DZV bigWig fold change over control ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF212KHM, ENCFF345AQI, ENCFF568CQH, ENCFF621MOH 859393368 ENCODE Processing Pipeline 8c310c21974af4655938c0ae584a392e https://www.encodeproject.org/files/ENCFF044DZV/@@download/ENCFF044DZV.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF405TCV bed narrowPeak replicated peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF179RKW, ENCFF598KIL, ENCFF646KDW 1602241 ENCODE Processing Pipeline 8969f45c88adeff060356285f107682d https://www.encodeproject.org/files/ENCFF405TCV/@@download/ENCFF405TCV.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF905NSD bigBed narrowPeak replicated peaks ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF405TCV 3756609 ENCODE Processing Pipeline 9e37c5d16f8c938e39eb236636581f7f https://www.encodeproject.org/files/ENCFF905NSD/@@download/ENCFF905NSD.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF001NCF fastq reads ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 535747468 Michael Snyder, Stanford d4cdd8f97528fb69155dde7cdfe864a5 SRA:SRR5210709 https://www.encodeproject.org/files/ENCFF001NCF/@@download/ENCFF001NCF.fastq.gz Illumina Genome Analyzer II released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001NCK bigWig signal ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 ENCFF001NUD 163279050 Michael Snyder, Stanford 3597b1f9623158630268c2e813efe0d9 https://www.encodeproject.org/files/ENCFF001NCK/@@download/ENCFF001NCK.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001NUD bam alignments ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 ENCFF001NCF 443023712 Michael Snyder, Stanford 36ebfe93d477cea2001713f91427e815 https://www.encodeproject.org/files/ENCFF001NUD/@@download/ENCFF001NUD.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001NUE bigWig signal ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NUD 150729953 Michael Snyder, Stanford 032226dd65ad1b4ced74620fe8090b58 https://www.encodeproject.org/files/ENCFF001NUE/@@download/ENCFF001NUE.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001NCH fastq reads ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 2 36 single-ended 777316151 Michael Snyder, Stanford 045d4eec0f9d5e1d05bf178894e58048 SRA:SRR5210708 https://www.encodeproject.org/files/ENCFF001NCH/@@download/ENCFF001NCH.fastq.gz Illumina Genome Analyzer II released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF578PKM bam unfiltered alignments ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NCF, ENCFF001NCH, ENCFF018NEO 1406132452 ENCODE Processing Pipeline 37ead025efc08cec29cfbf1ca580dc02 https://www.encodeproject.org/files/ENCFF578PKM/@@download/ENCFF578PKM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF171OVT bam alignments ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NCF, ENCFF001NCH, ENCFF018NEO 705826066 ENCODE Processing Pipeline 8be0e3299a0e36b3534b8484041bd382 https://www.encodeproject.org/files/ENCFF171OVT/@@download/ENCFF171OVT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001MYV bigBed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHG 368510 Michael Snyder, Stanford 9cbd001a0b67398d23aeab008e4f94d3 https://www.encodeproject.org/files/ENCFF001MYV/@@download/ENCFF001MYV.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001MYW fastq reads ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 886857943 Michael Snyder, Stanford 4e1040a75c631f52fa77d35e2e9252ed https://www.encodeproject.org/files/ENCFF001MYW/@@download/ENCFF001MYW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001MYY fastq reads ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1111017495 Michael Snyder, Stanford b40c793956b7bab6712fa6a8333cc813 https://www.encodeproject.org/files/ENCFF001MYY/@@download/ENCFF001MYY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001MZA bigWig signal ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MZB, ENCFF001MZC 239107474 Michael Snyder, Stanford 1d8c0e4e353a764222648b47f1f479cb https://www.encodeproject.org/files/ENCFF001MZA/@@download/ENCFF001MZA.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001MZB bam alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 ENCFF001MYW 512178965 Michael Snyder, Stanford 2eb9776774d89eaff1df335c66087cfc https://www.encodeproject.org/files/ENCFF001MZB/@@download/ENCFF001MZB.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001MZC bam alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 ENCFF001MYY 616929087 Michael Snyder, Stanford fd0f3cdbd71aecd6b8edb0b4cdb4d5ad https://www.encodeproject.org/files/ENCFF001MZC/@@download/ENCFF001MZC.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001YHG bed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MZB, ENCFF001MZC 136610 Michael Snyder, Stanford 1203fb94cb886bd6b8ddf9825bd89f69 https://www.encodeproject.org/files/ENCFF001YHG/@@download/ENCFF001YHG.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF765FVA bam unfiltered alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYY, ENCFF018NEO 1205698198 ENCODE Processing Pipeline 62f05892ce2bbc7bca2cfa8cd77490cd https://www.encodeproject.org/files/ENCFF765FVA/@@download/ENCFF765FVA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF247GUP bam unfiltered alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYW, ENCFF018NEO 979558483 ENCODE Processing Pipeline c6c4d192ef5b402e42cfeb96f488ab02 https://www.encodeproject.org/files/ENCFF247GUP/@@download/ENCFF247GUP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF497FFT bam alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYY, ENCFF018NEO 832184366 ENCODE Processing Pipeline c2a55ae2ab28bcf7222cf005f44b954e https://www.encodeproject.org/files/ENCFF497FFT/@@download/ENCFF497FFT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF167TPO bam alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYW, ENCFF018NEO 714572546 ENCODE Processing Pipeline ea30f9cbbcea7854491c6856d6009921 https://www.encodeproject.org/files/ENCFF167TPO/@@download/ENCFF167TPO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF228KAW bigBed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF736XRK 4578003 ENCODE Processing Pipeline ecc43b8ad143d3139f68370590902538 https://www.encodeproject.org/files/ENCFF228KAW/@@download/ENCFF228KAW.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF659BXM bed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF497FFT 1562750 ENCODE Processing Pipeline f20543a60ab10c63b50daf3b97208765 https://www.encodeproject.org/files/ENCFF659BXM/@@download/ENCFF659BXM.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF281JXP bigWig signal p-value ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF167TPO, ENCFF171OVT, ENCFF497FFT 295257206 ENCODE Processing Pipeline cc0e8804d1b1fd87084578983da92864 https://www.encodeproject.org/files/ENCFF281JXP/@@download/ENCFF281JXP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF639JDI bed narrowPeak replicated peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF127REP, ENCFF659BXM, ENCFF736XRK 1381073 ENCODE Processing Pipeline 66ad7199b41ddc6c08d6c08b9974f605 https://www.encodeproject.org/files/ENCFF639JDI/@@download/ENCFF639JDI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF271NDB bigBed narrowPeak replicated peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF639JDI 3069854 ENCODE Processing Pipeline 89a24bd6a13af0e7967e7f83ad988b76 https://www.encodeproject.org/files/ENCFF271NDB/@@download/ENCFF271NDB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF127REP bed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF167TPO, ENCFF171OVT, ENCFF497FFT 1334264 ENCODE Processing Pipeline ea236a057198ff5cbc75ba2bed905e58 https://www.encodeproject.org/files/ENCFF127REP/@@download/ENCFF127REP.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF558NIB bigBed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF127REP 3773505 ENCODE Processing Pipeline 7ef6977df86d01a37159c3162e4e4cc2 https://www.encodeproject.org/files/ENCFF558NIB/@@download/ENCFF558NIB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF596UPY bigWig signal p-value ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF497FFT 315998219 ENCODE Processing Pipeline eb8ffa38fd806a24333d7805ae610504 https://www.encodeproject.org/files/ENCFF596UPY/@@download/ENCFF596UPY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF736XRK bed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF167TPO, ENCFF171OVT 1596613 ENCODE Processing Pipeline 06df698bb391ff8f3d3be1e8f05e4908 https://www.encodeproject.org/files/ENCFF736XRK/@@download/ENCFF736XRK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF707GFB bigWig signal p-value ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF167TPO, ENCFF171OVT 306930111 ENCODE Processing Pipeline 4e20bd90848b6eb6d665d5a0813ae21e https://www.encodeproject.org/files/ENCFF707GFB/@@download/ENCFF707GFB.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF269XHD bigWig fold change over control ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF497FFT 365391817 ENCODE Processing Pipeline 3a620059cbf837a07883a7912883136d https://www.encodeproject.org/files/ENCFF269XHD/@@download/ENCFF269XHD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF467RKK bigBed narrowPeak peaks ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF659BXM 4419597 ENCODE Processing Pipeline c6c090314db8e23ffa93acc11b19e5f3 https://www.encodeproject.org/files/ENCFF467RKK/@@download/ENCFF467RKK.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF589DKQ bigWig fold change over control ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF167TPO, ENCFF171OVT 320132922 ENCODE Processing Pipeline 92017ff4f68a18769d9ec0b61368d6cd https://www.encodeproject.org/files/ENCFF589DKQ/@@download/ENCFF589DKQ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF070ZCF bigWig fold change over control ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF167TPO, ENCFF171OVT, ENCFF497FFT 566881979 ENCODE Processing Pipeline 4fb226788c64438b94f0eda86049ba76 https://www.encodeproject.org/files/ENCFF070ZCF/@@download/ENCFF070ZCF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001MZT bam alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 ENCFF001MZV 279340051 Michael Snyder, Stanford aa6f5f59598004db5adf925e03bc629e https://www.encodeproject.org/files/ENCFF001MZT/@@download/ENCFF001MZT.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MZU bigBed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHJ 691951 Michael Snyder, Stanford f441cd68086168c1f5e31b0776b5abfc https://www.encodeproject.org/files/ENCFF001MZU/@@download/ENCFF001MZU.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MZV fastq reads ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 492607188 Michael Snyder, Stanford 9f905985155acda18b61bd94b5763215 SRA:SRR5210722 https://www.encodeproject.org/files/ENCFF001MZV/@@download/ENCFF001MZV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MZX fastq reads ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1068236975 Michael Snyder, Stanford cbca8ed31bbc17dffc54117bf55b5c40 SRA:SRR5210723 https://www.encodeproject.org/files/ENCFF001MZX/@@download/ENCFF001MZX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MZZ bigWig signal ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MZT, ENCFF001NAA 175578773 Michael Snyder, Stanford 71db3371ac3eb628fc117144a4dce47e https://www.encodeproject.org/files/ENCFF001MZZ/@@download/ENCFF001MZZ.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NAA bam alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 ENCFF001MZX 514946260 Michael Snyder, Stanford 61a61cd6427a050100f64c649bf2cb30 https://www.encodeproject.org/files/ENCFF001NAA/@@download/ENCFF001NAA.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YHJ bed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MZT, ENCFF001NAA 308038 Michael Snyder, Stanford 1874176a4b3f51bbc7f1c4d40c86c848 https://www.encodeproject.org/files/ENCFF001YHJ/@@download/ENCFF001YHJ.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF543GPW bam unfiltered alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MZV, ENCFF018NEO 518470121 ENCODE Processing Pipeline f7fd4670289586eb67b69f744f16a3cc https://www.encodeproject.org/files/ENCFF543GPW/@@download/ENCFF543GPW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF156YRG bam unfiltered alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MZX, ENCFF018NEO 1044185089 ENCODE Processing Pipeline 3c02dd31dbe730040d538c2093aa7ca6 https://www.encodeproject.org/files/ENCFF156YRG/@@download/ENCFF156YRG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF296MWW bam alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MZV, ENCFF018NEO 383021000 ENCODE Processing Pipeline c99f6bcb6196a34b399ad5f447c1c569 https://www.encodeproject.org/files/ENCFF296MWW/@@download/ENCFF296MWW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF170HAX bam alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MZX, ENCFF018NEO 682807766 ENCODE Processing Pipeline e6125fc16d8314c050f74d3122dc7738 https://www.encodeproject.org/files/ENCFF170HAX/@@download/ENCFF170HAX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF762HUF bed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF296MWW 935651 ENCODE Processing Pipeline 1a5c61df4d529662e0368d8b18aba1b2 https://www.encodeproject.org/files/ENCFF762HUF/@@download/ENCFF762HUF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF473CXX bigBed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF297AOB 2329390 ENCODE Processing Pipeline 95c5e078c14ff31b91e36117c191862a https://www.encodeproject.org/files/ENCFF473CXX/@@download/ENCFF473CXX.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF482EHK bed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF170HAX, ENCFF171OVT, ENCFF296MWW 806124 ENCODE Processing Pipeline 292cca0a78b5fd7e1ef7f99138f1a39f https://www.encodeproject.org/files/ENCFF482EHK/@@download/ENCFF482EHK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF297AOB bed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF170HAX, ENCFF171OVT 804941 ENCODE Processing Pipeline ba1ba6b24abec547eff5f7507cc3a4c3 https://www.encodeproject.org/files/ENCFF297AOB/@@download/ENCFF297AOB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF999WKG bigBed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF482EHK 2285981 ENCODE Processing Pipeline 11b4d669dd87dfaf13ad6d95165fdbb1 https://www.encodeproject.org/files/ENCFF999WKG/@@download/ENCFF999WKG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF931OHO bigWig signal p-value ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF296MWW 282190582 ENCODE Processing Pipeline d97220be0e6180c3d5e71aed84d9ce6f https://www.encodeproject.org/files/ENCFF931OHO/@@download/ENCFF931OHO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF872LHZ bigBed narrowPeak peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF762HUF 2659541 ENCODE Processing Pipeline 3dc134c76c13c999db6f92be4fb7c45a https://www.encodeproject.org/files/ENCFF872LHZ/@@download/ENCFF872LHZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF200CWY bigWig signal p-value ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF170HAX, ENCFF171OVT 280455298 ENCODE Processing Pipeline 21bd948180d9ddea459184acb954f0e6 https://www.encodeproject.org/files/ENCFF200CWY/@@download/ENCFF200CWY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF404TDY bigWig fold change over control ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF296MWW 186044926 ENCODE Processing Pipeline 1dc266f20dd401edd84b80a95806f499 https://www.encodeproject.org/files/ENCFF404TDY/@@download/ENCFF404TDY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF380HBP bigBed narrowPeak replicated peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF140BSU 2119964 ENCODE Processing Pipeline 27435d98067d2eeec483485e155970a1 https://www.encodeproject.org/files/ENCFF380HBP/@@download/ENCFF380HBP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF834NDL bigWig signal p-value ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF170HAX, ENCFF171OVT, ENCFF296MWW 266072403 ENCODE Processing Pipeline f2ad16da2f171e4d192563e773355fd5 https://www.encodeproject.org/files/ENCFF834NDL/@@download/ENCFF834NDL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF116EAC bigWig fold change over control ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF170HAX, ENCFF171OVT 269613813 ENCODE Processing Pipeline 1951b9d2c4dbff27e7e73a15360a870a https://www.encodeproject.org/files/ENCFF116EAC/@@download/ENCFF116EAC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF140BSU bed narrowPeak replicated peaks ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF297AOB, ENCFF482EHK, ENCFF762HUF 1023517 ENCODE Processing Pipeline 238e630745c1877df574ffdf0cad1f49 https://www.encodeproject.org/files/ENCFF140BSU/@@download/ENCFF140BSU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF583MBD bigWig fold change over control ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF170HAX, ENCFF171OVT, ENCFF296MWW 377151699 ENCODE Processing Pipeline 88cf4908ea3ad1ee878104f8932f5129 https://www.encodeproject.org/files/ENCFF583MBD/@@download/ENCFF583MBD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF033RKM fastq reads ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1838631571 Bing Ren, UCSD d51650eb86b7d7a76d6b47a73485578a SRA:SRR3652055 https://www.encodeproject.org/files/ENCFF033RKM/@@download/ENCFF033RKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released mild to moderate bottlenecking, inconsistent platforms ENCFF254LLN fastq reads ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1402393584 Bing Ren, UCSD 08b5ce2271a6cc85859c016186b3921d SRA:SRR3652054 https://www.encodeproject.org/files/ENCFF254LLN/@@download/ENCFF254LLN.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF719FZS bam alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF033RKM, ENCFF806TVZ 1556867526 ENCODE Processing Pipeline 35ac80e5bb0e443e511c714c17f1f8ae https://www.encodeproject.org/files/ENCFF719FZS/@@download/ENCFF719FZS.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF778HKO bam alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF254LLN, ENCFF806TVZ 1148076933 ENCODE Processing Pipeline 7c8e38e609deea15075cd5d5eb2e53ff https://www.encodeproject.org/files/ENCFF778HKO/@@download/ENCFF778HKO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF133ATE bed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF719FZS 904198 ENCODE Processing Pipeline 18164a74d94b191926eab0dd9ff0abc1 https://www.encodeproject.org/files/ENCFF133ATE/@@download/ENCFF133ATE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF805NDW bed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF711NEU, ENCFF778HKO 864348 ENCODE Processing Pipeline 8b6668ba1bd1922e2407142c42f8f379 https://www.encodeproject.org/files/ENCFF805NDW/@@download/ENCFF805NDW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF229HYQ bed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF711NEU, ENCFF719FZS, ENCFF778HKO 1018336 ENCODE Processing Pipeline 31d0e033a277782daf1fb744e581709a https://www.encodeproject.org/files/ENCFF229HYQ/@@download/ENCFF229HYQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF985OZP bigBed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF805NDW 2708392 ENCODE Processing Pipeline 4dcced396013d0607f8dc1d398d585dc https://www.encodeproject.org/files/ENCFF985OZP/@@download/ENCFF985OZP.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF484ZAF bigBed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF133ATE 2810011 ENCODE Processing Pipeline 6ae22c466bd9348bd49c2f19825f4639 https://www.encodeproject.org/files/ENCFF484ZAF/@@download/ENCFF484ZAF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF777SSC bigWig signal p-value ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF719FZS 572690903 ENCODE Processing Pipeline 0ea1a5cb51b966e882ee3f15dd3542c4 https://www.encodeproject.org/files/ENCFF777SSC/@@download/ENCFF777SSC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF945SMB bigBed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF229HYQ 3082339 ENCODE Processing Pipeline 7f233921aa12ef4c51905888e8b53128 https://www.encodeproject.org/files/ENCFF945SMB/@@download/ENCFF945SMB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF772QSJ bigWig signal p-value ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF711NEU, ENCFF778HKO 470612793 ENCODE Processing Pipeline bc7f553defe6c7eb3f5b0c066ace3c0d https://www.encodeproject.org/files/ENCFF772QSJ/@@download/ENCFF772QSJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF224ZJS bigWig signal p-value ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF711NEU, ENCFF719FZS, ENCFF778HKO 751149411 ENCODE Processing Pipeline ccdd84050d4d997566b3bf62343f2b41 https://www.encodeproject.org/files/ENCFF224ZJS/@@download/ENCFF224ZJS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF929ULA bigWig fold change over control ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF719FZS 590558398 ENCODE Processing Pipeline 83ffeb5a21368cce4f2e5d39fa30cc6c https://www.encodeproject.org/files/ENCFF929ULA/@@download/ENCFF929ULA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF399RAP bigWig fold change over control ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF711NEU, ENCFF778HKO 466043824 ENCODE Processing Pipeline b4ace72df53deb9e27072b1c18d224f6 https://www.encodeproject.org/files/ENCFF399RAP/@@download/ENCFF399RAP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF284WPF bigWig fold change over control ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF711NEU, ENCFF719FZS, ENCFF778HKO 1004027041 ENCODE Processing Pipeline 56c2bf80e40de80684ea55a8a05dcd84 https://www.encodeproject.org/files/ENCFF284WPF/@@download/ENCFF284WPF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF965AYM bigBed narrowPeak replicated peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF591JDZ 2260996 ENCODE Processing Pipeline cd562d55c494117b5970789c9e03b481 https://www.encodeproject.org/files/ENCFF965AYM/@@download/ENCFF965AYM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF591JDZ bed narrowPeak replicated peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF133ATE, ENCFF229HYQ, ENCFF805NDW 993238 ENCODE Processing Pipeline 8ff3de097861b362ed26cff77f9cd7d2 https://www.encodeproject.org/files/ENCFF591JDZ/@@download/ENCFF591JDZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF682VOL bam unfiltered alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF254LLN 1651326347 ENCODE Processing Pipeline 7bc07ee479f528ef130068821127bc04 https://www.encodeproject.org/files/ENCFF682VOL/@@download/ENCFF682VOL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF309PYX bam unfiltered alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF033RKM 2160204112 ENCODE Processing Pipeline 72fa14c50c82654919bd78b4314720fd https://www.encodeproject.org/files/ENCFF309PYX/@@download/ENCFF309PYX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF544BZW bam alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF254LLN 1147783786 ENCODE Processing Pipeline a146c778d2c519b48dbd5175f50b1cfa https://www.encodeproject.org/files/ENCFF544BZW/@@download/ENCFF544BZW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF010EYX bam alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF033RKM 1556584107 ENCODE Processing Pipeline 89a67a6d6bd4b7ce54c0383a983fcda6 https://www.encodeproject.org/files/ENCFF010EYX/@@download/ENCFF010EYX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF875FNX bed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF010EYX, ENCFF125FAE, ENCFF580YCN 947636 ENCODE Processing Pipeline f3c2986f5bdbf8294b68bfff0cf518a9 https://www.encodeproject.org/files/ENCFF875FNX/@@download/ENCFF875FNX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF332PJZ bed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF010EYX, ENCFF125FAE, ENCFF544BZW, ENCFF580YCN 987034 ENCODE Processing Pipeline ee73ad89b5f4abbfce22c520c1be466c https://www.encodeproject.org/files/ENCFF332PJZ/@@download/ENCFF332PJZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF755ETA bed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF544BZW, ENCFF580YCN 951081 ENCODE Processing Pipeline 2efb2cdec12efe6155c531fd2c0f41f4 https://www.encodeproject.org/files/ENCFF755ETA/@@download/ENCFF755ETA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF835ODM bigBed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF875FNX 2897430 ENCODE Processing Pipeline 42e6e1f5b9677e9a6849b4d1a4383799 https://www.encodeproject.org/files/ENCFF835ODM/@@download/ENCFF835ODM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF677DOA bigBed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF332PJZ 2988719 ENCODE Processing Pipeline 6d805da0ddb3578efcce43c545f36a79 https://www.encodeproject.org/files/ENCFF677DOA/@@download/ENCFF677DOA.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF715SBX bigBed narrowPeak peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF755ETA 2937321 ENCODE Processing Pipeline bc14bc980691584914c76952ae30446d https://www.encodeproject.org/files/ENCFF715SBX/@@download/ENCFF715SBX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF961ARS bigWig signal p-value ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF010EYX, ENCFF125FAE, ENCFF580YCN 876385165 ENCODE Processing Pipeline 7cd44a6cdcd24fbd5268ab5d73e9206c https://www.encodeproject.org/files/ENCFF961ARS/@@download/ENCFF961ARS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF690JAK bigWig signal p-value ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF544BZW, ENCFF580YCN 760711869 ENCODE Processing Pipeline 42330870e469f8310a1b98b73d7fe516 https://www.encodeproject.org/files/ENCFF690JAK/@@download/ENCFF690JAK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF195XEA bigWig signal p-value ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF010EYX, ENCFF125FAE, ENCFF544BZW, ENCFF580YCN 1154783713 ENCODE Processing Pipeline 9a4c506f7dc0970dc26fce3f88100990 https://www.encodeproject.org/files/ENCFF195XEA/@@download/ENCFF195XEA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF855FHC bigWig fold change over control ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF010EYX, ENCFF125FAE, ENCFF580YCN 856321036 ENCODE Processing Pipeline 833d032874fc7c2915b0b7ef61b3db4c https://www.encodeproject.org/files/ENCFF855FHC/@@download/ENCFF855FHC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF139SBA bigWig fold change over control ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF544BZW, ENCFF580YCN 741478437 ENCODE Processing Pipeline f2a7d689ed7db877387fad9f13a40914 https://www.encodeproject.org/files/ENCFF139SBA/@@download/ENCFF139SBA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF290CLV bigWig fold change over control ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF010EYX, ENCFF125FAE, ENCFF544BZW, ENCFF580YCN 1137539639 ENCODE Processing Pipeline 9834e8ad173e27cdca2b6f35424a1dda https://www.encodeproject.org/files/ENCFF290CLV/@@download/ENCFF290CLV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF239MLQ bigBed narrowPeak replicated peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF970SVO 2308668 ENCODE Processing Pipeline 64f4c28208d9eb8d78dd6f9e7a024653 https://www.encodeproject.org/files/ENCFF239MLQ/@@download/ENCFF239MLQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF970SVO bed narrowPeak replicated peaks ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF332PJZ, ENCFF755ETA, ENCFF875FNX 1022352 ENCODE Processing Pipeline 16a3ba1dd82e0862ad73d39984a80791 https://www.encodeproject.org/files/ENCFF970SVO/@@download/ENCFF970SVO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001NTS fastq reads ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 879449842 Michael Snyder, Stanford 52ed0b1ea8a9eb8f9284b23aa978a122 SRA:SRR5210714 https://www.encodeproject.org/files/ENCFF001NTS/@@download/ENCFF001NTS.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NTV bam alignments ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NTS 770518252 Michael Snyder, Stanford 5ee877112fa0ddf37a5d788bc2e2ff3c https://www.encodeproject.org/files/ENCFF001NTV/@@download/ENCFF001NTV.bam mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NTY bigWig signal ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NTV 309268914 Michael Snyder, Stanford d99a34468ea3a93f6e4ae8815c957214 https://www.encodeproject.org/files/ENCFF001NTY/@@download/ENCFF001NTY.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NTU fastq reads ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 666960714 Michael Snyder, Stanford 44d7814ebefd61fae974541ffce4c785 SRA:SRR5210715 https://www.encodeproject.org/files/ENCFF001NTU/@@download/ENCFF001NTU.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF038ZRC bam unfiltered alignments ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NTU, ENCFF018NEO 770632888 ENCODE Processing Pipeline e141df35d77876d1c6a386509a182440 https://www.encodeproject.org/files/ENCFF038ZRC/@@download/ENCFF038ZRC.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF479KKI bam alignments ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NTU, ENCFF018NEO 484965069 ENCODE Processing Pipeline 3da3933b158a48711790454f75f290ce https://www.encodeproject.org/files/ENCFF479KKI/@@download/ENCFF479KKI.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF627BNQ bam unfiltered alignments ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NTS, ENCFF018NEO 1004451753 ENCODE Processing Pipeline adc2d62c71fcb95cc0a2c6c88d29cd88 https://www.encodeproject.org/files/ENCFF627BNQ/@@download/ENCFF627BNQ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF277LUN bam alignments ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NTS, ENCFF018NEO 648070830 ENCODE Processing Pipeline 8b1d785fd4e4ca6f0a83c7de63266432 https://www.encodeproject.org/files/ENCFF277LUN/@@download/ENCFF277LUN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001LUX bigBed broadPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YBN 1052173 Ross Hardison, PennState 9906e359f4e19c101543b970a6efd36d https://www.encodeproject.org/files/ENCFF001LUX/@@download/ENCFF001LUX.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001LUY bam alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LVE 3374000089 Ross Hardison, PennState c0c6e181977015a79272056d564c9d9b https://www.encodeproject.org/files/ENCFF001LUY/@@download/ENCFF001LUY.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001LUZ bam alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LVG 5787667033 Ross Hardison, PennState b3aef4d5550e7f02764103dba4a5c03d https://www.encodeproject.org/files/ENCFF001LUZ/@@download/ENCFF001LUZ.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001LVA bigBed broadPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YBO 1100199 Ross Hardison, PennState 078546be70d7b476a6f938d29e054829 https://www.encodeproject.org/files/ENCFF001LVA/@@download/ENCFF001LVA.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001LVB bigBed broadPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YBP 1593399 Ross Hardison, PennState 35464e6361c95897f27ac8106c839820 https://www.encodeproject.org/files/ENCFF001LVB/@@download/ENCFF001LVB.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001LVC bigWig signal ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 6005775709 Ross Hardison, PennState f338c5489c6560d73c7596da808ef29c https://www.encodeproject.org/files/ENCFF001LVC/@@download/ENCFF001LVC.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LVD bigWig signal ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5017760693 Ross Hardison, PennState 4b6b283d8f7974f415848d8bcd8eff1f https://www.encodeproject.org/files/ENCFF001LVD/@@download/ENCFF001LVD.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LVE fastq reads ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 48 single-ended 3171074022 Ross Hardison, PennState 7a2a3d4fc2ed925517cd042cd37f9f30 https://www.encodeproject.org/files/ENCFF001LVE/@@download/ENCFF001LVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLY/ released mild to moderate bottlenecking, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity ENCFF001LVF bigWig signal ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 6280442760 Ross Hardison, PennState e50de18e819667c45da5410c697205b3 https://www.encodeproject.org/files/ENCFF001LVF/@@download/ENCFF001LVF.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LVG fastq reads ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 5182356750 Ross Hardison, PennState 04d8145db29e94322b6e1ee6d4e307fb https://www.encodeproject.org/files/ENCFF001LVG/@@download/ENCFF001LVG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLS/ released mild to moderate bottlenecking, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity ENCFF001YBN bed broadPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 537590 Ross Hardison, PennState 02f057a645c451691451d3669f0c32cc https://www.encodeproject.org/files/ENCFF001YBN/@@download/ENCFF001YBN.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YBO bed broadPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 465375 Ross Hardison, PennState 6dbf561b352ae95a62b3565cb9a33c1e https://www.encodeproject.org/files/ENCFF001YBO/@@download/ENCFF001YBO.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YBP bed broadPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 652738 Ross Hardison, PennState 0d86e22dfbf099b1cbc8adbc24da36b1 https://www.encodeproject.org/files/ENCFF001YBP/@@download/ENCFF001YBP.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF885KXN bam unfiltered alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVE, ENCFF018NEO 2983286153 ENCODE Processing Pipeline 50015c7725fa72f07aed22a75c3222c1 https://www.encodeproject.org/files/ENCFF885KXN/@@download/ENCFF885KXN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF042HWY bam unfiltered alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LVG, ENCFF018NEO 4587803682 ENCODE Processing Pipeline 1917a0034d3e02a01220da6abb74420a https://www.encodeproject.org/files/ENCFF042HWY/@@download/ENCFF042HWY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF426EFY bam alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVE, ENCFF018NEO 1741601224 ENCODE Processing Pipeline 732e42a80300dd2545aee4c9ad806296 https://www.encodeproject.org/files/ENCFF426EFY/@@download/ENCFF426EFY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF960HQZ bam alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LVG, ENCFF018NEO 2989909512 ENCODE Processing Pipeline a598cec34caf911f64d1afc0c23c8a0d https://www.encodeproject.org/files/ENCFF960HQZ/@@download/ENCFF960HQZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF649CPB bed narrowPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF867VYO, ENCFF960HQZ 830059 ENCODE Processing Pipeline 24b53eee353681917ebff7701337559e https://www.encodeproject.org/files/ENCFF649CPB/@@download/ENCFF649CPB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF852TLD bed narrowPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF426EFY, ENCFF867VYO 819555 ENCODE Processing Pipeline 9c835275dd616615fe0be2395f45b601 https://www.encodeproject.org/files/ENCFF852TLD/@@download/ENCFF852TLD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF065JKR bigBed narrowPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF046LGG 1988913 ENCODE Processing Pipeline 8d2e9f81502e3feff8dba861785f59b9 https://www.encodeproject.org/files/ENCFF065JKR/@@download/ENCFF065JKR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF609TUM bigBed narrowPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF649CPB 2172438 ENCODE Processing Pipeline 336e9918d79eb2fa5d3bcf469d144ab7 https://www.encodeproject.org/files/ENCFF609TUM/@@download/ENCFF609TUM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF046LGG bed narrowPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF426EFY, ENCFF867VYO, ENCFF960HQZ 662893 ENCODE Processing Pipeline 1bfdd810435ec2907aec9dcf14ea235c https://www.encodeproject.org/files/ENCFF046LGG/@@download/ENCFF046LGG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF856FTF bigBed narrowPeak peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF852TLD 2448041 ENCODE Processing Pipeline a89bc72c1680cbcce2b9cd4d7400087d https://www.encodeproject.org/files/ENCFF856FTF/@@download/ENCFF856FTF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF413HKB bigWig signal p-value ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF867VYO, ENCFF960HQZ 1203870485 ENCODE Processing Pipeline e382da512f193a5f358f97c58c8eda90 https://www.encodeproject.org/files/ENCFF413HKB/@@download/ENCFF413HKB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF514ERQ bigWig signal p-value ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF426EFY, ENCFF867VYO 850285776 ENCODE Processing Pipeline 7711b7d61da387fde04acccb20bed5b6 https://www.encodeproject.org/files/ENCFF514ERQ/@@download/ENCFF514ERQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF172ZVY bigWig signal p-value ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF426EFY, ENCFF867VYO, ENCFF960HQZ 1698426987 ENCODE Processing Pipeline 6e38ae7e6bd64fea26b1488b11848bd3 https://www.encodeproject.org/files/ENCFF172ZVY/@@download/ENCFF172ZVY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF554TFI bigWig fold change over control ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF867VYO, ENCFF960HQZ 1468041630 ENCODE Processing Pipeline b8e06dc790fc52ba1fc06f6d7336f24e https://www.encodeproject.org/files/ENCFF554TFI/@@download/ENCFF554TFI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF149VRJ bigWig fold change over control ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF426EFY, ENCFF867VYO 930308562 ENCODE Processing Pipeline de932c70cd910593919f694074b5b3a1 https://www.encodeproject.org/files/ENCFF149VRJ/@@download/ENCFF149VRJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF288OKN bigWig fold change over control ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF426EFY, ENCFF867VYO, ENCFF960HQZ 1735055535 ENCODE Processing Pipeline eb0072d20643731033b789d0b371f7c3 https://www.encodeproject.org/files/ENCFF288OKN/@@download/ENCFF288OKN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF587KXO bigBed narrowPeak replicated peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF973RST 1449467 ENCODE Processing Pipeline af7c4e0a51a8ee6353443af771747447 https://www.encodeproject.org/files/ENCFF587KXO/@@download/ENCFF587KXO.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF973RST bed narrowPeak replicated peaks ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF046LGG, ENCFF649CPB, ENCFF852TLD 609469 ENCODE Processing Pipeline 688e0c66ae350b1ad4b8ce70a42e6980 https://www.encodeproject.org/files/ENCFF973RST/@@download/ENCFF973RST.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001JYD bam alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JYT 674074097 Bing Ren, UCSD 494fe026b0ef5a1b7bd7fa12ddc9f68c https://www.encodeproject.org/files/ENCFF001JYD/@@download/ENCFF001JYD.bam mm9 archived low read length insufficient read depth, control insufficient read depth ENCFF001JYE bam alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JYU 1058415994 Bing Ren, UCSD c90897c2f4eec489bab7af3191fdd536 https://www.encodeproject.org/files/ENCFF001JYE/@@download/ENCFF001JYE.bam mm9 archived low read length insufficient read depth, control insufficient read depth ENCFF001JYH bigBed broadPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE ENCFF001XVX 2221976 Bing Ren, UCSD b69d401bd993ac55fc8ed211084eacfc https://www.encodeproject.org/files/ENCFF001JYH/@@download/ENCFF001JYH.bigBed mm9 archived low read length insufficient read depth, control insufficient read depth ENCFF001JYI bigWig signal ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 46393232 Bing Ren, UCSD bfd51cd36a3a7fe7e0d5ee2747ef3261 https://www.encodeproject.org/files/ENCFF001JYI/@@download/ENCFF001JYI.bigWig mm9 archived low read length missing derived_from insufficient read depth, control insufficient read depth ENCFF001JYT fastq reads ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 641085642 Bing Ren, UCSD a6a223d92dbf90ac3eca3fa0516dfb1a https://www.encodeproject.org/files/ENCFF001JYT/@@download/ENCFF001JYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZL/ released low read length, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF001JYU fastq reads ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1017517200 Bing Ren, UCSD 167ad171f55d9a6b080e9f360c4998b6 https://www.encodeproject.org/files/ENCFF001JYU/@@download/ENCFF001JYU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZE/ released low read length insufficient read depth, control insufficient read depth ENCFF001XVX bed broadPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1281997 Bing Ren, UCSD 90ddb0a8be9c1d3d69ca383c6d44feca https://www.encodeproject.org/files/ENCFF001XVX/@@download/ENCFF001XVX.bed.gz mm9 archived low read length missing derived_from insufficient read depth, control insufficient read depth ENCFF305APB bam unfiltered alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JYU, ENCFF018NEO 1137325829 ENCODE Processing Pipeline 51255ac5a4cd0a5b24dff93585b7b5d4 https://www.encodeproject.org/files/ENCFF305APB/@@download/ENCFF305APB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF470GFR bam unfiltered alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JYT, ENCFF018NEO 725326822 ENCODE Processing Pipeline cfe927b126f716e6ac2f2a0fb41c19b3 https://www.encodeproject.org/files/ENCFF470GFR/@@download/ENCFF470GFR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF287IGR bam alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JYT, ENCFF018NEO 592671879 ENCODE Processing Pipeline 3e11acdaacc1bb5401765cda4b19ad2d https://www.encodeproject.org/files/ENCFF287IGR/@@download/ENCFF287IGR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF018LJX bam alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JYU, ENCFF018NEO 926023107 ENCODE Processing Pipeline 37a25062f769ad93ea9448838e78ad87 https://www.encodeproject.org/files/ENCFF018LJX/@@download/ENCFF018LJX.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF690XGK bed narrowPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF018LJX, ENCFF380RIM, ENCFF436OKP 3675675 ENCODE Processing Pipeline 5568befd9d752675435211ba628a8325 https://www.encodeproject.org/files/ENCFF690XGK/@@download/ENCFF690XGK.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF653VGT bed narrowPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF018LJX, ENCFF287IGR, ENCFF380RIM, ENCFF436OKP 3381737 ENCODE Processing Pipeline ae2b8e2f4cb2f225a5912966cd41118b https://www.encodeproject.org/files/ENCFF653VGT/@@download/ENCFF653VGT.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF229YHN bigBed narrowPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF690XGK 9700195 ENCODE Processing Pipeline 74aa2b0e32af1ceed9ccf75b2b68793d https://www.encodeproject.org/files/ENCFF229YHN/@@download/ENCFF229YHN.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF737AFG bigWig signal p-value ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF287IGR, ENCFF380RIM, ENCFF436OKP 375022404 ENCODE Processing Pipeline 3d1ddc4b9def596e849f7aa060782275 https://www.encodeproject.org/files/ENCFF737AFG/@@download/ENCFF737AFG.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF316XRS bigWig fold change over control ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF287IGR, ENCFF380RIM, ENCFF436OKP 300356789 ENCODE Processing Pipeline 8ff5bcc22a565d08b2b3a91b8f859387 https://www.encodeproject.org/files/ENCFF316XRS/@@download/ENCFF316XRS.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF167PJA bigWig fold change over control ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF018LJX, ENCFF287IGR, ENCFF380RIM, ENCFF436OKP 583242874 ENCODE Processing Pipeline 685d09b6ab04b7f7705f6fdaea8740ea https://www.encodeproject.org/files/ENCFF167PJA/@@download/ENCFF167PJA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF274AXA bed narrowPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF287IGR, ENCFF380RIM, ENCFF436OKP 3347181 ENCODE Processing Pipeline c65a19af2d9893c2f2e02b34eafcab23 https://www.encodeproject.org/files/ENCFF274AXA/@@download/ENCFF274AXA.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF668BKD bigBed narrowPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF274AXA 8789689 ENCODE Processing Pipeline 4d6fd113ee15ac0c462e573c631b5b64 https://www.encodeproject.org/files/ENCFF668BKD/@@download/ENCFF668BKD.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF449SBL bigWig signal p-value ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF018LJX, ENCFF380RIM, ENCFF436OKP 416391019 ENCODE Processing Pipeline db41cf64481e9106f3c4aa26811377a3 https://www.encodeproject.org/files/ENCFF449SBL/@@download/ENCFF449SBL.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF144KEG bigWig fold change over control ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF018LJX, ENCFF380RIM, ENCFF436OKP 419468725 ENCODE Processing Pipeline 4046abb2ca5eb68b682db8681092bc72 https://www.encodeproject.org/files/ENCFF144KEG/@@download/ENCFF144KEG.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF648KTL bigBed narrowPeak peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF653VGT 8853975 ENCODE Processing Pipeline f1dd73f5bcdf6d1911a3f642e4aded04 https://www.encodeproject.org/files/ENCFF648KTL/@@download/ENCFF648KTL.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF631RIH bigWig signal p-value ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF018LJX, ENCFF287IGR, ENCFF380RIM, ENCFF436OKP 506365754 ENCODE Processing Pipeline 6378b2e8d3c6deb5b725be6f7bfb0f6d https://www.encodeproject.org/files/ENCFF631RIH/@@download/ENCFF631RIH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF841WUO bigBed narrowPeak replicated peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF061JVX 7914114 ENCODE Processing Pipeline a921b645e563c0126aa869eca11fb542 https://www.encodeproject.org/files/ENCFF841WUO/@@download/ENCFF841WUO.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF061JVX bed narrowPeak replicated peaks ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF274AXA, ENCFF653VGT, ENCFF690XGK 4293610 ENCODE Processing Pipeline 3ddb6d361cafcafded227fc24f895723 https://www.encodeproject.org/files/ENCFF061JVX/@@download/ENCFF061JVX.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001MWZ bam alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001MXF 332741105 Sherman Weissman, Yale db16f3cb885ebe9fc84a99ba9104de80 https://www.encodeproject.org/files/ENCFF001MWZ/@@download/ENCFF001MWZ.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MXA bam alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001MXH 291365852 Sherman Weissman, Yale f9ee12ad8d2ae0e3bfe9f0b05b205be5 https://www.encodeproject.org/files/ENCFF001MXA/@@download/ENCFF001MXA.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MXB bigBed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE ENCFF001YHB 1228998 Sherman Weissman, Yale 4da04ce4737d74d7ca8d77d62a414cd5 https://www.encodeproject.org/files/ENCFF001MXB/@@download/ENCFF001MXB.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MXD bigWig signal ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 227987624 Sherman Weissman, Yale d8d04c4b5a2dcd33e4bd4fb0680a37b8 https://www.encodeproject.org/files/ENCFF001MXD/@@download/ENCFF001MXD.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MXF fastq reads ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 808406756 Sherman Weissman, Yale 5fbe47e031a0af4b67d356b5bd4c348a https://www.encodeproject.org/files/ENCFF001MXF/@@download/ENCFF001MXF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001MYM/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MXH fastq reads ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 959938378 Sherman Weissman, Yale 8f4923e506cc12d7803084b87985f99c https://www.encodeproject.org/files/ENCFF001MXH/@@download/ENCFF001MXH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001MYM/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YHB bed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 445446 Sherman Weissman, Yale 85826b0e0c0c365cb123c8a4d4aac2ba https://www.encodeproject.org/files/ENCFF001YHB/@@download/ENCFF001YHB.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth missing derived_from, biological replicates with identical biosample ENCFF504YWT bam unfiltered alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001MXH, ENCFF018NEO 1076741817 ENCODE Processing Pipeline 7ca7750200840f4168443f22b461dee6 https://www.encodeproject.org/files/ENCFF504YWT/@@download/ENCFF504YWT.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF418BLM bam unfiltered alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001MXF, ENCFF018NEO 949498394 ENCODE Processing Pipeline fae5bc7d254fea7f0ef51305920cf008 https://www.encodeproject.org/files/ENCFF418BLM/@@download/ENCFF418BLM.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF206UPH bam alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001MXF, ENCFF018NEO 626201426 ENCODE Processing Pipeline 6284823d28a86d37d3f6a1979965cc0e https://www.encodeproject.org/files/ENCFF206UPH/@@download/ENCFF206UPH.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF345EVO bam alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001MXH, ENCFF018NEO 635257996 ENCODE Processing Pipeline 16ff087706ca4df5cfa7d2e0e5bf841b https://www.encodeproject.org/files/ENCFF345EVO/@@download/ENCFF345EVO.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF572CES bed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF206UPH, ENCFF345EVO, ENCFF784ZAX 612024 ENCODE Processing Pipeline 956f6704136f551f00288147c2c8532b https://www.encodeproject.org/files/ENCFF572CES/@@download/ENCFF572CES.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF533XFF bed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF206UPH, ENCFF784ZAX 687842 ENCODE Processing Pipeline cb507be1fdf447beb7d1f311a41eee68 https://www.encodeproject.org/files/ENCFF533XFF/@@download/ENCFF533XFF.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF365OJS bigWig signal p-value ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF206UPH, ENCFF784ZAX 349491435 ENCODE Processing Pipeline 98fb48f8a300d84597b46e911ed8d01d https://www.encodeproject.org/files/ENCFF365OJS/@@download/ENCFF365OJS.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF906TRD bigBed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF533XFF 2044912 ENCODE Processing Pipeline 9ad73962eaf7ef0aca44beac17a67170 https://www.encodeproject.org/files/ENCFF906TRD/@@download/ENCFF906TRD.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF553CLA bed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF345EVO, ENCFF784ZAX 783238 ENCODE Processing Pipeline 3b7cd95db0834538ceb21d8b3667e25f https://www.encodeproject.org/files/ENCFF553CLA/@@download/ENCFF553CLA.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF062HYQ bigBed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF572CES 1757212 ENCODE Processing Pipeline fe5d895569826ea9e76c21a3092021c7 https://www.encodeproject.org/files/ENCFF062HYQ/@@download/ENCFF062HYQ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF382AZY bigWig signal p-value ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF345EVO, ENCFF784ZAX 355121140 ENCODE Processing Pipeline 64cb1b9d8f34f6b0e9238a8e95bbf09c https://www.encodeproject.org/files/ENCFF382AZY/@@download/ENCFF382AZY.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF288FZJ bigBed narrowPeak peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF553CLA 2263442 ENCODE Processing Pipeline 64deced9c24b0358924a850bb6987623 https://www.encodeproject.org/files/ENCFF288FZJ/@@download/ENCFF288FZJ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF346SJT bigWig signal p-value ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF206UPH, ENCFF345EVO, ENCFF784ZAX 496636663 ENCODE Processing Pipeline 19cab34338b37c2cd2f304a9bdeae3dc https://www.encodeproject.org/files/ENCFF346SJT/@@download/ENCFF346SJT.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF289QMU bigWig fold change over control ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF206UPH, ENCFF784ZAX 312038334 ENCODE Processing Pipeline 8b496817220d1647bd9d849a41b42235 https://www.encodeproject.org/files/ENCFF289QMU/@@download/ENCFF289QMU.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF186GLL bigWig fold change over control ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF345EVO, ENCFF784ZAX 282957831 ENCODE Processing Pipeline c558ab4074003da512b0329385941c21 https://www.encodeproject.org/files/ENCFF186GLL/@@download/ENCFF186GLL.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF426ODS bigWig fold change over control ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF206UPH, ENCFF345EVO, ENCFF784ZAX 499364499 ENCODE Processing Pipeline a98a9314cab92e0e5cdc6702c3f6e446 https://www.encodeproject.org/files/ENCFF426ODS/@@download/ENCFF426ODS.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF612YWK bed narrowPeak replicated peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF533XFF, ENCFF553CLA, ENCFF572CES 721749 ENCODE Processing Pipeline 14439873ea2b4c194b21e766eaf53488 https://www.encodeproject.org/files/ENCFF612YWK/@@download/ENCFF612YWK.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF998VEA bigBed narrowPeak replicated peaks ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF612YWK 1600205 ENCODE Processing Pipeline 114e591f8c370fe32fd0b00309c626ad https://www.encodeproject.org/files/ENCFF998VEA/@@download/ENCFF998VEA.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF229RMI fastq reads ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1176592691 Richard Myers, HAIB aa66cc22ac82d161ed420256e9db1eb6 SRA:SRR5112437 https://www.encodeproject.org/files/ENCFF229RMI/@@download/ENCFF229RMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF299JNL/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF978BAW fastq reads ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1113492994 Richard Myers, HAIB 749b740df71ae9787b8a95ef33638c2c SRA:SRR5112438 https://www.encodeproject.org/files/ENCFF978BAW/@@download/ENCFF978BAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF299JNL/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF870EFC bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF806TVZ, ENCFF978BAW 768264889 ENCODE Processing Pipeline 5ec8db8b6350bb71100a2c4151e17579 https://www.encodeproject.org/files/ENCFF870EFC/@@download/ENCFF870EFC.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF065XOC bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF229RMI, ENCFF806TVZ 808081021 ENCODE Processing Pipeline 61240bd50f9a6b8e196518e8a9fefc5f https://www.encodeproject.org/files/ENCFF065XOC/@@download/ENCFF065XOC.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF470MBB bam unfiltered alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 1158726795 ENCODE Processing Pipeline 8370b642e4d1dab7b5a43d3d4b5d6845 https://www.encodeproject.org/files/ENCFF470MBB/@@download/ENCFF470MBB.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF111WBO bam unfiltered alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 1096755931 ENCODE Processing Pipeline 0566c8b88a062c25822bd3ec48268666 https://www.encodeproject.org/files/ENCFF111WBO/@@download/ENCFF111WBO.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF081EGW bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 768147722 ENCODE Processing Pipeline 0439c0b05160aadeab7171194be651a1 https://www.encodeproject.org/files/ENCFF081EGW/@@download/ENCFF081EGW.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF627DYN bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 807967242 ENCODE Processing Pipeline 0712832e76da92124e3c872cf04e5a7c https://www.encodeproject.org/files/ENCFF627DYN/@@download/ENCFF627DYN.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF909EDQ bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 348474525 ENCODE Processing Pipeline 6ef3466012d368e859cdd11b51592786 https://www.encodeproject.org/files/ENCFF909EDQ/@@download/ENCFF909EDQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF698RNZ bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 293850585 ENCODE Processing Pipeline db428b72f0e471e9b3914790382f00cc https://www.encodeproject.org/files/ENCFF698RNZ/@@download/ENCFF698RNZ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF671TIQ bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 268709895 ENCODE Processing Pipeline bd58b41fafa94621197c012f7ad025a1 https://www.encodeproject.org/files/ENCFF671TIQ/@@download/ENCFF671TIQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF310FWM bed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 5230046 ENCODE Processing Pipeline ef19176ec04005c6f5d5a52bc65c5ec8 https://www.encodeproject.org/files/ENCFF310FWM/@@download/ENCFF310FWM.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF722SID bigBed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF310FWM 11292007 ENCODE Processing Pipeline 27489b2e39ac7f65b0e94ca150151273 https://www.encodeproject.org/files/ENCFF722SID/@@download/ENCFF722SID.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF702PWG bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 257796471 ENCODE Processing Pipeline 8cf1905d69e533b7f962ae9c2c490701 https://www.encodeproject.org/files/ENCFF702PWG/@@download/ENCFF702PWG.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF906LQJ bigBed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF708ZJC 10706230 ENCODE Processing Pipeline 95693478e1763183e213f2c3e5464520 https://www.encodeproject.org/files/ENCFF906LQJ/@@download/ENCFF906LQJ.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF260DWI bed narrowPeak conservative idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF057OUB, ENCFF310FWM, ENCFF547MET, ENCFF708ZJC 874858 ENCODE Processing Pipeline af638558ba9633c7dfadd2bc4ae7eb4e https://www.encodeproject.org/files/ENCFF260DWI/@@download/ENCFF260DWI.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF112EXI bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 418293386 ENCODE Processing Pipeline 55955345a7c4cbb79cdb5d8dc54674e3 https://www.encodeproject.org/files/ENCFF112EXI/@@download/ENCFF112EXI.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF186QKQ bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 448261025 ENCODE Processing Pipeline 2c4d426932e116cbc27296d9077d9478 https://www.encodeproject.org/files/ENCFF186QKQ/@@download/ENCFF186QKQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF708ZJC bed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 4558568 ENCODE Processing Pipeline 2b0556392c3dcce1cf7408946f2cedb2 https://www.encodeproject.org/files/ENCFF708ZJC/@@download/ENCFF708ZJC.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF057OUB bed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 4593408 ENCODE Processing Pipeline a92c2e3cfd6e9983f5b5308d4fd504ce https://www.encodeproject.org/files/ENCFF057OUB/@@download/ENCFF057OUB.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF027XBS bigBed narrowPeak peaks and background as input for IDR ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF057OUB 10765643 ENCODE Processing Pipeline ba2c00cf7fe30bf8c568bda4cc826d68 https://www.encodeproject.org/files/ENCFF027XBS/@@download/ENCFF027XBS.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF362ESI bigBed narrowPeak optimal idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF048VNT 1464730 ENCODE Processing Pipeline 18cbe340792503fce1d836d3d235ebba https://www.encodeproject.org/files/ENCFF362ESI/@@download/ENCFF362ESI.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF048VNT bed narrowPeak optimal idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF057OUB, ENCFF310FWM, ENCFF547MET, ENCFF708ZJC 912745 ENCODE Processing Pipeline a469d67bd20bc36a1ede7f44f7a05567 https://www.encodeproject.org/files/ENCFF048VNT/@@download/ENCFF048VNT.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF042YPB bigBed narrowPeak conservative idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF260DWI 1415854 ENCODE Processing Pipeline 7d19c41449942b7a1788aa0c3e45ff8e https://www.encodeproject.org/files/ENCFF042YPB/@@download/ENCFF042YPB.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF002ESY fastq reads ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 986119495 Bing Ren, UCSD 5a48cf012b1553c2382a7dbb829ba5a7 SRA:SRR3651991 https://www.encodeproject.org/files/ENCFF002ESY/@@download/ENCFF002ESY.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXY/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESZ fastq reads ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 970698139 Bing Ren, UCSD 00356794aaaab972eebdca1a500ef4c4 SRA:SRR3651989 https://www.encodeproject.org/files/ENCFF002ESZ/@@download/ENCFF002ESZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYA/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF129NMB fastq reads ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 512101750 Bing Ren, UCSD e1524e6936be0100ff74daaba7d5a2b1 SRA:SRR3651990 https://www.encodeproject.org/files/ENCFF129NMB/@@download/ENCFF129NMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYA/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF945DAW fastq reads ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 437671960 Bing Ren, UCSD 5868aa33f5a86deb9af418d96ce57b76 SRA:SRR3651992 https://www.encodeproject.org/files/ENCFF945DAW/@@download/ENCFF945DAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXY/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF789HIF bam alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESY, ENCFF806TVZ, ENCFF945DAW 1311485667 ENCODE Processing Pipeline c501055d3041f9ddf4f5d013d6c9e43e https://www.encodeproject.org/files/ENCFF789HIF/@@download/ENCFF789HIF.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF213CFN bam alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESZ, ENCFF129NMB, ENCFF806TVZ 1376596982 ENCODE Processing Pipeline 98511256e43e50e0b4bddd293022fe1f https://www.encodeproject.org/files/ENCFF213CFN/@@download/ENCFF213CFN.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF760GLT bed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF213CFN, ENCFF789HIF 2257778 ENCODE Processing Pipeline d28307ba72a2bfc92b369542d29d1fc7 https://www.encodeproject.org/files/ENCFF760GLT/@@download/ENCFF760GLT.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF978PLR bigBed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF760GLT 6287961 ENCODE Processing Pipeline 1692354906793d2d824320deb80fd446 https://www.encodeproject.org/files/ENCFF978PLR/@@download/ENCFF978PLR.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF356LEU bed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF789HIF 2023564 ENCODE Processing Pipeline 6c8d9f2d7af7c4804520294a41c3c980 https://www.encodeproject.org/files/ENCFF356LEU/@@download/ENCFF356LEU.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF338XEU bigBed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF211FHE 7652448 ENCODE Processing Pipeline a71c757fce3b0b22ba6e5d73c1fff9c7 https://www.encodeproject.org/files/ENCFF338XEU/@@download/ENCFF338XEU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF177HQS bigWig signal p-value ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF213CFN 556403464 ENCODE Processing Pipeline 5cd3b25cc5914b1796463c59d26638c5 https://www.encodeproject.org/files/ENCFF177HQS/@@download/ENCFF177HQS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF593JLX bigBed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF356LEU 5836760 ENCODE Processing Pipeline 9d9a02eeaf32b5763747d13f33aeaac6 https://www.encodeproject.org/files/ENCFF593JLX/@@download/ENCFF593JLX.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF211FHE bed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF213CFN 2795959 ENCODE Processing Pipeline 632e2a531763c121eca58f092f8627db https://www.encodeproject.org/files/ENCFF211FHE/@@download/ENCFF211FHE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF317FSC bigWig signal p-value ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF789HIF 547273843 ENCODE Processing Pipeline 16556721d8d76cec3a4855e67457bee4 https://www.encodeproject.org/files/ENCFF317FSC/@@download/ENCFF317FSC.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF422ITH bigWig fold change over control ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF213CFN 545215406 ENCODE Processing Pipeline 55f16fa7e5258ea303ff3fd7a0e7a7ff https://www.encodeproject.org/files/ENCFF422ITH/@@download/ENCFF422ITH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF962BTA bigWig signal p-value ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF213CFN, ENCFF789HIF 555485206 ENCODE Processing Pipeline 7e2b45b9b9d025638bcc81c83e605272 https://www.encodeproject.org/files/ENCFF962BTA/@@download/ENCFF962BTA.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF467JBN bigWig fold change over control ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF789HIF 538578787 ENCODE Processing Pipeline bb9b4929a3af877196e9bdae60363948 https://www.encodeproject.org/files/ENCFF467JBN/@@download/ENCFF467JBN.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF261UNI bigWig fold change over control ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF213CFN, ENCFF789HIF 874247511 ENCODE Processing Pipeline e378557ef2f27101228e7140d2bdc1d0 https://www.encodeproject.org/files/ENCFF261UNI/@@download/ENCFF261UNI.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF432LLG bigBed narrowPeak replicated peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF787PKN 4876898 ENCODE Processing Pipeline ef839eca3b604f3be15a69b39b034390 https://www.encodeproject.org/files/ENCFF432LLG/@@download/ENCFF432LLG.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF787PKN bed narrowPeak replicated peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF211FHE, ENCFF356LEU, ENCFF760GLT 2234807 ENCODE Processing Pipeline fceb3152791c12481939481c1019abbf https://www.encodeproject.org/files/ENCFF787PKN/@@download/ENCFF787PKN.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF336WOH bam unfiltered alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESY, ENCFF018NEO, ENCFF945DAW 1701728476 ENCODE Processing Pipeline 0f5f1f600d838c48e7d974e35e966473 https://www.encodeproject.org/files/ENCFF336WOH/@@download/ENCFF336WOH.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF667TLD bam unfiltered alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESZ, ENCFF018NEO, ENCFF129NMB 1736638538 ENCODE Processing Pipeline b270082ab0c1c60e48c197b9177033e5 https://www.encodeproject.org/files/ENCFF667TLD/@@download/ENCFF667TLD.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF440VFN bam alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESY, ENCFF018NEO, ENCFF945DAW 1198218216 ENCODE Processing Pipeline 9ca94529207f78125c6bcded26f60f0f https://www.encodeproject.org/files/ENCFF440VFN/@@download/ENCFF440VFN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF151AXQ bam alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESZ, ENCFF018NEO, ENCFF129NMB 1246173484 ENCODE Processing Pipeline 8678da297cbf5c9d7eed7cee0fca623d https://www.encodeproject.org/files/ENCFF151AXQ/@@download/ENCFF151AXQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF879ROD bed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF151AXQ, ENCFF855ISH 2753231 ENCODE Processing Pipeline 9948949688bffac34b110765f1babffa https://www.encodeproject.org/files/ENCFF879ROD/@@download/ENCFF879ROD.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF074YDI bigBed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF879ROD 7565803 ENCODE Processing Pipeline d82d2df3ffe5df5cc68b597abf0676db https://www.encodeproject.org/files/ENCFF074YDI/@@download/ENCFF074YDI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF762FNN bed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF440VFN, ENCFF855ISH 1301994 ENCODE Processing Pipeline 418349aabbbf0b50b801ef8ba1d8c8ad https://www.encodeproject.org/files/ENCFF762FNN/@@download/ENCFF762FNN.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF736QXB bed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF151AXQ, ENCFF440VFN, ENCFF855ISH 2247364 ENCODE Processing Pipeline 3e1e15670f213f6e644b7a8544ef55ec https://www.encodeproject.org/files/ENCFF736QXB/@@download/ENCFF736QXB.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF508QKU bigBed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF762FNN 3086157 ENCODE Processing Pipeline f6e16e71b6afa4fc5d2ce8d6396ba225 https://www.encodeproject.org/files/ENCFF508QKU/@@download/ENCFF508QKU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF879WWQ bigBed narrowPeak peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF736QXB 6256554 ENCODE Processing Pipeline ee14df99854b536ba0f04006b8342657 https://www.encodeproject.org/files/ENCFF879WWQ/@@download/ENCFF879WWQ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF872QPL bigWig signal p-value ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF151AXQ, ENCFF855ISH 557534178 ENCODE Processing Pipeline 199dfc4bef68f57c708174d25dc1a997 https://www.encodeproject.org/files/ENCFF872QPL/@@download/ENCFF872QPL.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF984HFZ bigWig signal p-value ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF440VFN, ENCFF855ISH 292731262 ENCODE Processing Pipeline 1f54e7b07add877791229a3370a0bd28 https://www.encodeproject.org/files/ENCFF984HFZ/@@download/ENCFF984HFZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF097IAT bigWig signal p-value ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF151AXQ, ENCFF440VFN, ENCFF855ISH 549294887 ENCODE Processing Pipeline 74822b1281ed1dc50e543562a74afd66 https://www.encodeproject.org/files/ENCFF097IAT/@@download/ENCFF097IAT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF144LYM bigWig fold change over control ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF151AXQ, ENCFF855ISH 536973240 ENCODE Processing Pipeline 2e2155031af95c9e2d83320428d4ced3 https://www.encodeproject.org/files/ENCFF144LYM/@@download/ENCFF144LYM.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF628NQN bigWig fold change over control ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF440VFN, ENCFF855ISH 420746759 ENCODE Processing Pipeline db9a7d252f66a230ec4182d091bfe286 https://www.encodeproject.org/files/ENCFF628NQN/@@download/ENCFF628NQN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF534WMK bigWig fold change over control ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF151AXQ, ENCFF440VFN, ENCFF855ISH 861047067 ENCODE Processing Pipeline a3697ff15780e4edd6414b64894853d1 https://www.encodeproject.org/files/ENCFF534WMK/@@download/ENCFF534WMK.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF696ERS bed narrowPeak replicated peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF736QXB, ENCFF762FNN, ENCFF879ROD 2075523 ENCODE Processing Pipeline 806f35c50921758096a3a947712100a0 https://www.encodeproject.org/files/ENCFF696ERS/@@download/ENCFF696ERS.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF502RDF bigBed narrowPeak replicated peaks ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF696ERS 4597298 ENCODE Processing Pipeline 4b017464f55529fea903cb76adccf7a1 https://www.encodeproject.org/files/ENCFF502RDF/@@download/ENCFF502RDF.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF831OJP fastq reads ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 2369364322 Bing Ren, UCSD fb402d136265f562c5051057fc2a0ebb SRA:SRR3653104 https://www.encodeproject.org/files/ENCFF831OJP/@@download/ENCFF831OJP.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF448EWF fastq reads ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 2 50 single-ended 2382052952 Bing Ren, UCSD ace5d679e2e4227077fb66d549e97027 SRA:SRR3653105 https://www.encodeproject.org/files/ENCFF448EWF/@@download/ENCFF448EWF.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF429LRO fastq reads ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 2635356741 Bing Ren, UCSD f9aa2dc3091534afaaf849bb716479f0 SRA:SRR3653103 https://www.encodeproject.org/files/ENCFF429LRO/@@download/ENCFF429LRO.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF960JES bam alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF429LRO, ENCFF806TVZ 2193150211 ENCODE Processing Pipeline a0f5bf506ed728eb6d56372a283b0881 https://www.encodeproject.org/files/ENCFF960JES/@@download/ENCFF960JES.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF800BXS bam alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF448EWF, ENCFF806TVZ, ENCFF831OJP 2734056122 ENCODE Processing Pipeline 383f372330ec1d95d1e00245bea954af https://www.encodeproject.org/files/ENCFF800BXS/@@download/ENCFF800BXS.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF886PLU bigBed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF391GYF 7344016 ENCODE Processing Pipeline 4c541ce4eec3b82f8969cd6285254636 https://www.encodeproject.org/files/ENCFF886PLU/@@download/ENCFF886PLU.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF526LXB bigBed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF497ECD 7859462 ENCODE Processing Pipeline 27371beae0624225ea866779ac40a5f8 https://www.encodeproject.org/files/ENCFF526LXB/@@download/ENCFF526LXB.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF360WBM bigWig signal p-value ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF960JES 820259125 ENCODE Processing Pipeline c526d531b76ecf89de7604a4c9b05eb0 https://www.encodeproject.org/files/ENCFF360WBM/@@download/ENCFF360WBM.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF668QHI bigWig signal p-value ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF720CTQ, ENCFF800BXS, ENCFF960JES 1802306326 ENCODE Processing Pipeline 67d7ed8a1c3ca6af2e5f56c5dec9ac41 https://www.encodeproject.org/files/ENCFF668QHI/@@download/ENCFF668QHI.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF744MZQ bigBed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF274DWQ 7979080 ENCODE Processing Pipeline f5a88425d67b876c747f3b85ac95449b https://www.encodeproject.org/files/ENCFF744MZQ/@@download/ENCFF744MZQ.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF391GYF bed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF960JES 3171103 ENCODE Processing Pipeline c30a122abce7f414fa4af7b8efa5b7ea https://www.encodeproject.org/files/ENCFF391GYF/@@download/ENCFF391GYF.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF497ECD bed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF720CTQ, ENCFF800BXS 3450571 ENCODE Processing Pipeline a91cf9c6357975816dd14ca383a9d121 https://www.encodeproject.org/files/ENCFF497ECD/@@download/ENCFF497ECD.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF274DWQ bed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF720CTQ, ENCFF800BXS, ENCFF960JES 3537827 ENCODE Processing Pipeline 913e6a76ff0b9ab71873e1e45035d261 https://www.encodeproject.org/files/ENCFF274DWQ/@@download/ENCFF274DWQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF380MJD bigWig signal p-value ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF720CTQ, ENCFF800BXS 1388185323 ENCODE Processing Pipeline 1240e5221d1ac193860e60eff0e07f48 https://www.encodeproject.org/files/ENCFF380MJD/@@download/ENCFF380MJD.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF586EAF bigWig fold change over control ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF720CTQ, ENCFF800BXS 1528030803 ENCODE Processing Pipeline 49e09c8912957c0c74e29353c007bdc2 https://www.encodeproject.org/files/ENCFF586EAF/@@download/ENCFF586EAF.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF085KPP bigWig fold change over control ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF960JES 980028066 ENCODE Processing Pipeline e8c750dc9489030f80c4e4e58e5ab99b https://www.encodeproject.org/files/ENCFF085KPP/@@download/ENCFF085KPP.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF864EPK bigWig fold change over control ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF720CTQ, ENCFF800BXS, ENCFF960JES 1867896124 ENCODE Processing Pipeline 4df76427a1139dc3e61282337c709c6e https://www.encodeproject.org/files/ENCFF864EPK/@@download/ENCFF864EPK.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF829AEC bigBed narrowPeak replicated peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF855NOP 5773616 ENCODE Processing Pipeline 87e0a4bc15f3114b16dd7621703bb642 https://www.encodeproject.org/files/ENCFF829AEC/@@download/ENCFF829AEC.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF855NOP bed narrowPeak replicated peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF274DWQ, ENCFF391GYF, ENCFF497ECD 3527304 ENCODE Processing Pipeline dbe85c8c8fd2c7b96358319115236a76 https://www.encodeproject.org/files/ENCFF855NOP/@@download/ENCFF855NOP.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF162VNN bam unfiltered alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF429LRO 3399365743 ENCODE Processing Pipeline 74a086f5caf453fef15d807f9ebb5515 https://www.encodeproject.org/files/ENCFF162VNN/@@download/ENCFF162VNN.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF717BYH bam unfiltered alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF448EWF, ENCFF831OJP 5718237788 ENCODE Processing Pipeline 95744f4b3f4e89584d0838410f2d4802 https://www.encodeproject.org/files/ENCFF717BYH/@@download/ENCFF717BYH.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF530QAI bam alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF429LRO 2192643255 ENCODE Processing Pipeline 2153394698a4113bca5dbd6ce89e948d https://www.encodeproject.org/files/ENCFF530QAI/@@download/ENCFF530QAI.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF451DSW bam alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF448EWF, ENCFF831OJP 2733542814 ENCODE Processing Pipeline 16b33c9b5fa1e1d7809492e5e252ab16 https://www.encodeproject.org/files/ENCFF451DSW/@@download/ENCFF451DSW.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF223AOS bed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF104UXG, ENCFF451DSW, ENCFF741HOY 3525588 ENCODE Processing Pipeline 94a93d5942aeb307e390f9ee2e35fa06 https://www.encodeproject.org/files/ENCFF223AOS/@@download/ENCFF223AOS.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF458IIT bed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF530QAI 3172585 ENCODE Processing Pipeline 9896a8309dc00ee4d61a17d15c9413bc https://www.encodeproject.org/files/ENCFF458IIT/@@download/ENCFF458IIT.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF329CPK bed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF451DSW, ENCFF530QAI, ENCFF741HOY 3501737 ENCODE Processing Pipeline 908f9f0b34997b2aaf3ea15956b02f4c https://www.encodeproject.org/files/ENCFF329CPK/@@download/ENCFF329CPK.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF891OHO bigBed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF223AOS 8032162 ENCODE Processing Pipeline 7960937e12fd4d49a6cea410847b285b https://www.encodeproject.org/files/ENCFF891OHO/@@download/ENCFF891OHO.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF014AIB bigBed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF458IIT 7347718 ENCODE Processing Pipeline ea9a7ca3b21e46a263c1e57393dab2e9 https://www.encodeproject.org/files/ENCFF014AIB/@@download/ENCFF014AIB.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF743HSK bigBed narrowPeak peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF329CPK 7904445 ENCODE Processing Pipeline 45a2bc8f4a525d6f13bd568debb7cfda https://www.encodeproject.org/files/ENCFF743HSK/@@download/ENCFF743HSK.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF587LVR bigWig signal p-value ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF104UXG, ENCFF451DSW, ENCFF741HOY 1374721817 ENCODE Processing Pipeline 0a778ed99561bf6b149b5a826855d949 https://www.encodeproject.org/files/ENCFF587LVR/@@download/ENCFF587LVR.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF099AFA bigWig signal p-value ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF530QAI 982949042 ENCODE Processing Pipeline 73af3c276d1186738503ae9a0f46f3c8 https://www.encodeproject.org/files/ENCFF099AFA/@@download/ENCFF099AFA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF967HVU bigWig signal p-value ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF451DSW, ENCFF530QAI, ENCFF741HOY 1811019247 ENCODE Processing Pipeline 697db991ed5015b931de3c48f54a9b23 https://www.encodeproject.org/files/ENCFF967HVU/@@download/ENCFF967HVU.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF433CJF bigWig fold change over control ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF104UXG, ENCFF451DSW, ENCFF741HOY 1504628954 ENCODE Processing Pipeline 0f1a816445ffdab80e1ff787c99a36ee https://www.encodeproject.org/files/ENCFF433CJF/@@download/ENCFF433CJF.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF646SPM bigWig fold change over control ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF530QAI 976591134 ENCODE Processing Pipeline f85f0aa2cf422cbb507e9b359ca34248 https://www.encodeproject.org/files/ENCFF646SPM/@@download/ENCFF646SPM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF906TTD bigWig fold change over control ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF451DSW, ENCFF530QAI, ENCFF741HOY 1882787433 ENCODE Processing Pipeline dc2932508c5d3b0d4218463a9c0ee33e https://www.encodeproject.org/files/ENCFF906TTD/@@download/ENCFF906TTD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF301XNX bed narrowPeak replicated peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF223AOS, ENCFF329CPK, ENCFF458IIT 3486727 ENCODE Processing Pipeline 861834976d1d719d245d3d41be6c1734 https://www.encodeproject.org/files/ENCFF301XNX/@@download/ENCFF301XNX.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF456KJD bigBed narrowPeak replicated peaks ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF301XNX 5691261 ENCODE Processing Pipeline 30eb7a92d2a5ce5564fea970003a57c9 https://www.encodeproject.org/files/ENCFF456KJD/@@download/ENCFF456KJD.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF761WLY fastq reads ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3161649001 Bing Ren, UCSD 462339120a88a6fdcf321b35cf1bbf00 SRA:SRR3651930 https://www.encodeproject.org/files/ENCFF761WLY/@@download/ENCFF761WLY.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF853ZDE fastq reads ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3798849161 Bing Ren, UCSD 4ef8a6c9fd0a8a65e32bae524fcae958 SRA:SRR3651932 https://www.encodeproject.org/files/ENCFF853ZDE/@@download/ENCFF853ZDE.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF309QAZ bam alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF853ZDE 2792220578 ENCODE Processing Pipeline 18bcc7ff43387858f38fd8dc1ae453df https://www.encodeproject.org/files/ENCFF309QAZ/@@download/ENCFF309QAZ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF015ICF bam alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF761WLY, ENCFF806TVZ 2353588017 ENCODE Processing Pipeline ff677e8139c888d5f27d5e5df56fa230 https://www.encodeproject.org/files/ENCFF015ICF/@@download/ENCFF015ICF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF228SGW bam unfiltered alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018NEO, ENCFF853ZDE 4534897809 ENCODE Processing Pipeline 41dc614136e9208595947a1d9175112c https://www.encodeproject.org/files/ENCFF228SGW/@@download/ENCFF228SGW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF098HSW bam alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF853ZDE 2791574504 ENCODE Processing Pipeline aa853842466864c5695ac77a6556375c https://www.encodeproject.org/files/ENCFF098HSW/@@download/ENCFF098HSW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF891IWG fastq reads ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 378198794 Bing Ren, UCSD 3f5f89c8acc98663ca21558639875551 SRA:SRR3651931 https://www.encodeproject.org/files/ENCFF891IWG/@@download/ENCFF891IWG.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF738CMD bam unfiltered alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF018NEO, ENCFF761WLY, ENCFF891IWG 4373900595 ENCODE Processing Pipeline 59b5c343bced2f20bcd62887fecfef9d https://www.encodeproject.org/files/ENCFF738CMD/@@download/ENCFF738CMD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF805AXD bam alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF761WLY, ENCFF891IWG 2756727749 ENCODE Processing Pipeline 33b2c6c06325ae416ff796d6326601bf https://www.encodeproject.org/files/ENCFF805AXD/@@download/ENCFF805AXD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF743HQG fastq reads ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3418185501 Bing Ren, UCSD 1cec1f929fc60e0fee55d4d45b594353 SRA:SRR3652960 https://www.encodeproject.org/files/ENCFF743HQG/@@download/ENCFF743HQG.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF507RYO fastq reads ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2703685985 Bing Ren, UCSD bce8d9c67efeecb217450bbafc034864 SRA:SRR3652957 https://www.encodeproject.org/files/ENCFF507RYO/@@download/ENCFF507RYO.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF834ZUW bam alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF743HQG, ENCFF806TVZ 2625573742 ENCODE Processing Pipeline 70f9dbfdcee91ac40799b9bd7c66978e https://www.encodeproject.org/files/ENCFF834ZUW/@@download/ENCFF834ZUW.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF326YEF bam alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF507RYO, ENCFF806TVZ 2197936264 ENCODE Processing Pipeline 4855987b14db5bd46be4c61c6cfd648f https://www.encodeproject.org/files/ENCFF326YEF/@@download/ENCFF326YEF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF078VAN bam unfiltered alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF743HQG 4082996093 ENCODE Processing Pipeline 5666dd7020aa9eabed2071a2dab33a27 https://www.encodeproject.org/files/ENCFF078VAN/@@download/ENCFF078VAN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF643WUI bam alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF743HQG 2624856413 ENCODE Processing Pipeline fe39eeeae7f0df89ab1812e889eb50c1 https://www.encodeproject.org/files/ENCFF643WUI/@@download/ENCFF643WUI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF306EGG fastq reads ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 239011474 Bing Ren, UCSD 109a5a02acfc23d882012ab0a1af72bb SRA:SRR3652958 https://www.encodeproject.org/files/ENCFF306EGG/@@download/ENCFF306EGG.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF110DYF fastq reads ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 327555275 Bing Ren, UCSD 1eec2433352b92737dabeb57e8b564c5 SRA:SRR3652959 https://www.encodeproject.org/files/ENCFF110DYF/@@download/ENCFF110DYF.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF562YBS bam unfiltered alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF110DYF, ENCFF306EGG, ENCFF507RYO 4168196606 ENCODE Processing Pipeline 29ea3a823b4b855f4f02ecd8c3561aa0 https://www.encodeproject.org/files/ENCFF562YBS/@@download/ENCFF562YBS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF916TFR bam alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF110DYF, ENCFF306EGG, ENCFF507RYO 2792497944 ENCODE Processing Pipeline fa67903582d63e1dc170514d1120eaf4 https://www.encodeproject.org/files/ENCFF916TFR/@@download/ENCFF916TFR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001ZSR fastq reads ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1064993835 Bing Ren, UCSD 9627f1994c86f62d9d87c0f6bd117992 SRA:SRR3652922 https://www.encodeproject.org/files/ENCFF001ZSR/@@download/ENCFF001ZSR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVB/ released low read length, low read depth ENCFF001ZSU fastq reads ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1146702325 Bing Ren, UCSD 0823f20d72764543314ae76ababd273a SRA:SRR3652921 https://www.encodeproject.org/files/ENCFF001ZSU/@@download/ENCFF001ZSU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUX/ released low read length, low read depth ENCFF066TYT bam alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSU, ENCFF806TVZ 1027637472 ENCODE Processing Pipeline b18a358139514d974eb8038879b958e1 https://www.encodeproject.org/files/ENCFF066TYT/@@download/ENCFF066TYT.bam mm10-minimal archived low read length, low read depth ENCFF484KSH bam alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSR, ENCFF806TVZ 854517821 ENCODE Processing Pipeline 665a5194d396ba52574818401005dbea https://www.encodeproject.org/files/ENCFF484KSH/@@download/ENCFF484KSH.bam mm10-minimal archived low read length, low read depth ENCFF890ZEX bed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066TYT, ENCFF484KSH, ENCFF656MYX, ENCFF844PWX 652000 ENCODE Processing Pipeline 328014dfd1cbe7a80a951989725597fd https://www.encodeproject.org/files/ENCFF890ZEX/@@download/ENCFF890ZEX.bed.gz mm10-minimal archived low read length, low read depth ENCFF402BYG bigBed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF890ZEX 2095018 ENCODE Processing Pipeline d7a0b98e3411b23295987cedcde42926 https://www.encodeproject.org/files/ENCFF402BYG/@@download/ENCFF402BYG.bigBed mm10-minimal archived low read length, low read depth ENCFF984IPI bigBed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF701VPO 2296666 ENCODE Processing Pipeline 7602db3d4d06ec4b8db0922c31ed3877 https://www.encodeproject.org/files/ENCFF984IPI/@@download/ENCFF984IPI.bigBed mm10-minimal archived low read length, low read depth ENCFF697LDC bigWig signal p-value ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066TYT, ENCFF656MYX, ENCFF844PWX 392982482 ENCODE Processing Pipeline e421c24ecbc07a22c539ddc729e772fe https://www.encodeproject.org/files/ENCFF697LDC/@@download/ENCFF697LDC.bigWig mm10-minimal archived low read length, low read depth ENCFF701VPO bed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066TYT, ENCFF656MYX, ENCFF844PWX 918154 ENCODE Processing Pipeline eb95dc0bf9cc127ec295c152076fd71b https://www.encodeproject.org/files/ENCFF701VPO/@@download/ENCFF701VPO.bed.gz mm10-minimal archived low read length, low read depth ENCFF878HBT bed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF484KSH, ENCFF656MYX, ENCFF844PWX 783026 ENCODE Processing Pipeline c81ddb5b3b5d1bb0fb0ab21a4d7e5ebb https://www.encodeproject.org/files/ENCFF878HBT/@@download/ENCFF878HBT.bed.gz mm10-minimal archived low read length, low read depth ENCFF768SGE bigBed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF878HBT 2045316 ENCODE Processing Pipeline 93c9013cc275f968c8ed2a9f90c8599e https://www.encodeproject.org/files/ENCFF768SGE/@@download/ENCFF768SGE.bigBed mm10-minimal archived low read length, low read depth ENCFF816QCL bigWig signal p-value ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066TYT, ENCFF484KSH, ENCFF656MYX, ENCFF844PWX 525783917 ENCODE Processing Pipeline ac94d717067b02d58c8f1914ecc5b13f https://www.encodeproject.org/files/ENCFF816QCL/@@download/ENCFF816QCL.bigWig mm10-minimal archived low read length, low read depth ENCFF374IJZ bigWig signal p-value ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF484KSH, ENCFF656MYX, ENCFF844PWX 420744185 ENCODE Processing Pipeline 6ad528bf2ad47b66635d1d45187b7270 https://www.encodeproject.org/files/ENCFF374IJZ/@@download/ENCFF374IJZ.bigWig mm10-minimal archived low read length, low read depth ENCFF306NUA bigWig fold change over control ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066TYT, ENCFF656MYX, ENCFF844PWX 459314657 ENCODE Processing Pipeline 17a968c35bdb8dcf3624e0663a43f98e https://www.encodeproject.org/files/ENCFF306NUA/@@download/ENCFF306NUA.bigWig mm10-minimal archived low read length, low read depth ENCFF651RFT bigWig fold change over control ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF484KSH, ENCFF656MYX, ENCFF844PWX 401416387 ENCODE Processing Pipeline 01bbcbef5fb239deb77583ca70d8eaba https://www.encodeproject.org/files/ENCFF651RFT/@@download/ENCFF651RFT.bigWig mm10-minimal archived low read length, low read depth ENCFF791IJZ bigWig fold change over control ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066TYT, ENCFF484KSH, ENCFF656MYX, ENCFF844PWX 693260494 ENCODE Processing Pipeline 7997dc6a9bfb73197aca22062739a4a4 https://www.encodeproject.org/files/ENCFF791IJZ/@@download/ENCFF791IJZ.bigWig mm10-minimal archived low read length, low read depth ENCFF908QQY bigBed narrowPeak replicated peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF712YCQ 1793125 ENCODE Processing Pipeline e22e9522a90d0a369598319710051b20 https://www.encodeproject.org/files/ENCFF908QQY/@@download/ENCFF908QQY.bigBed mm10-minimal archived low read length, low read depth ENCFF712YCQ bed narrowPeak replicated peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF701VPO, ENCFF878HBT, ENCFF890ZEX 701471 ENCODE Processing Pipeline 311b2cbbf2f038a649304db5e5ade91b https://www.encodeproject.org/files/ENCFF712YCQ/@@download/ENCFF712YCQ.bed.gz mm10-minimal archived low read length, low read depth ENCFF810LTI bam unfiltered alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSR, ENCFF018NEO 1356726520 ENCODE Processing Pipeline 041b64250fef02af02d8d2b4e7180832 https://www.encodeproject.org/files/ENCFF810LTI/@@download/ENCFF810LTI.bam mm10 released low read length, low read depth ENCFF710TGT bam unfiltered alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSU, ENCFF018NEO 1479410793 ENCODE Processing Pipeline 06534561a5d5f99b90c8dcacaf683272 https://www.encodeproject.org/files/ENCFF710TGT/@@download/ENCFF710TGT.bam mm10 released low read length, low read depth ENCFF134ATU bam alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSR, ENCFF018NEO 854291102 ENCODE Processing Pipeline d36e86d635a1699004d4fa518b215105 https://www.encodeproject.org/files/ENCFF134ATU/@@download/ENCFF134ATU.bam mm10 released low read length, low read depth ENCFF985VSV bam alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSU, ENCFF018NEO 1027408594 ENCODE Processing Pipeline 8103cfa49215a6acd0212d86afc8c909 https://www.encodeproject.org/files/ENCFF985VSV/@@download/ENCFF985VSV.bam mm10 released low read length, low read depth ENCFF349NMB bed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF134ATU, ENCFF627JLU 783279 ENCODE Processing Pipeline d61b4f085ec60fa114bdc804c8171ce0 https://www.encodeproject.org/files/ENCFF349NMB/@@download/ENCFF349NMB.bed.gz mm10 released low read length, low read depth ENCFF127FMU bed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF985VSV 918603 ENCODE Processing Pipeline 8e54728f19a595bff8a0df1589634105 https://www.encodeproject.org/files/ENCFF127FMU/@@download/ENCFF127FMU.bed.gz mm10 released low read length, low read depth ENCFF414EJG bed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF134ATU, ENCFF627JLU, ENCFF985VSV 652450 ENCODE Processing Pipeline 8b077d83202aa4fe25c0108aa76376dd https://www.encodeproject.org/files/ENCFF414EJG/@@download/ENCFF414EJG.bed.gz mm10 released low read length, low read depth ENCFF470RZP bigBed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF127FMU 2298109 ENCODE Processing Pipeline 88d495fa8097210104b58a5f83bacb11 https://www.encodeproject.org/files/ENCFF470RZP/@@download/ENCFF470RZP.bigBed mm10 released low read length, low read depth ENCFF079RGW bigBed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF349NMB 2046826 ENCODE Processing Pipeline 6c7ae37a200110994d06d91a288995bb https://www.encodeproject.org/files/ENCFF079RGW/@@download/ENCFF079RGW.bigBed mm10 released low read length, low read depth ENCFF897FZV bigBed narrowPeak peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF414EJG 2097533 ENCODE Processing Pipeline 9dd2927357f143b964ec8572812d1884 https://www.encodeproject.org/files/ENCFF897FZV/@@download/ENCFF897FZV.bigBed mm10 released low read length, low read depth ENCFF993SFX bigWig signal p-value ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF985VSV 410586760 ENCODE Processing Pipeline 14a79b4b7bdd2012cb8b96abbee31ed3 https://www.encodeproject.org/files/ENCFF993SFX/@@download/ENCFF993SFX.bigWig mm10 released low read length, low read depth ENCFF667MDY bigWig signal p-value ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF134ATU, ENCFF627JLU 345414980 ENCODE Processing Pipeline 6dc55b8055d5d7c70f12377d3f682096 https://www.encodeproject.org/files/ENCFF667MDY/@@download/ENCFF667MDY.bigWig mm10 released low read length, low read depth ENCFF062GQV bigWig signal p-value ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF134ATU, ENCFF627JLU, ENCFF985VSV 525889039 ENCODE Processing Pipeline c3349596c3a656c5d26760642445703e https://www.encodeproject.org/files/ENCFF062GQV/@@download/ENCFF062GQV.bigWig mm10 released low read length, low read depth ENCFF593CJV bigWig fold change over control ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF985VSV 459461595 ENCODE Processing Pipeline b942c73b7f009eb69863db0df9a1ba9a https://www.encodeproject.org/files/ENCFF593CJV/@@download/ENCFF593CJV.bigWig mm10 released low read length, low read depth ENCFF694QMF bigWig fold change over control ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF134ATU, ENCFF627JLU 403107468 ENCODE Processing Pipeline 1bc2de3b436bf84ffe55f1cffedce89d https://www.encodeproject.org/files/ENCFF694QMF/@@download/ENCFF694QMF.bigWig mm10 released low read length, low read depth ENCFF923XEA bigWig fold change over control ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF134ATU, ENCFF627JLU, ENCFF985VSV 694807682 ENCODE Processing Pipeline 8abd8e36209ff3e8800b5e464e71dc6d https://www.encodeproject.org/files/ENCFF923XEA/@@download/ENCFF923XEA.bigWig mm10 released low read length, low read depth ENCFF368TGQ bed narrowPeak replicated peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF127FMU, ENCFF349NMB, ENCFF414EJG 700562 ENCODE Processing Pipeline 5e8fbd582be58885b99549a6151b4796 https://www.encodeproject.org/files/ENCFF368TGQ/@@download/ENCFF368TGQ.bed.gz mm10 released low read length, low read depth ENCFF981SLM bigBed narrowPeak replicated peaks ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF368TGQ 1790013 ENCODE Processing Pipeline a4dfdfc7ca2661370832956bf9a25050 https://www.encodeproject.org/files/ENCFF981SLM/@@download/ENCFF981SLM.bigBed mm10 released low read length, low read depth ENCFF024BJF fastq reads ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1914201017 Bing Ren, UCSD 5d478ee348c9e0d3ddaa338d77f7a046 SRA:SRR3652286 https://www.encodeproject.org/files/ENCFF024BJF/@@download/ENCFF024BJF.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF842RMF fastq reads ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2087938822 Bing Ren, UCSD 37c024378d3020cef6a92971e51faab2 SRA:SRR3652287 https://www.encodeproject.org/files/ENCFF842RMF/@@download/ENCFF842RMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF797XBF bam alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF842RMF 1390951475 ENCODE Processing Pipeline 7315c08ab9ab0f0140e76189985f9f86 https://www.encodeproject.org/files/ENCFF797XBF/@@download/ENCFF797XBF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF745OFI bam alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF024BJF, ENCFF806TVZ 1482673374 ENCODE Processing Pipeline 0e4c930721db3ecd0d11d8f0a394e119 https://www.encodeproject.org/files/ENCFF745OFI/@@download/ENCFF745OFI.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF406CXB bed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF745OFI, ENCFF834ZUW 830691 ENCODE Processing Pipeline 90fe0afcef1bcaf18a20ab6ac264c176 https://www.encodeproject.org/files/ENCFF406CXB/@@download/ENCFF406CXB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF937EMM bed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF797XBF, ENCFF834ZUW 870906 ENCODE Processing Pipeline 04755f654e3d75c7c0bf81c9bbdd1d07 https://www.encodeproject.org/files/ENCFF937EMM/@@download/ENCFF937EMM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF313USO bigBed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF406CXB 2564309 ENCODE Processing Pipeline c0bc042ee59b5c301ddd32242681669e https://www.encodeproject.org/files/ENCFF313USO/@@download/ENCFF313USO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF635OOV bigBed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF050EFK 2701927 ENCODE Processing Pipeline aac7bd3fc6ac4324202288fde0e6dbb9 https://www.encodeproject.org/files/ENCFF635OOV/@@download/ENCFF635OOV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF141VPB bigWig signal p-value ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF745OFI, ENCFF834ZUW 781396555 ENCODE Processing Pipeline 34b8cf48571e08d5fbd75056e29abf1d https://www.encodeproject.org/files/ENCFF141VPB/@@download/ENCFF141VPB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF770CLZ bigBed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF937EMM 2659174 ENCODE Processing Pipeline e0b0906ed1882b5db90b4376e72b7b58 https://www.encodeproject.org/files/ENCFF770CLZ/@@download/ENCFF770CLZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF050EFK bed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF326YEF, ENCFF745OFI, ENCFF797XBF, ENCFF834ZUW 911654 ENCODE Processing Pipeline 1094c656fda411b240ecac1aa4039b9d https://www.encodeproject.org/files/ENCFF050EFK/@@download/ENCFF050EFK.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF321BLF bigWig signal p-value ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF797XBF, ENCFF834ZUW 827951849 ENCODE Processing Pipeline 1b2b4c39991d4f35faf8d4567ee75f29 https://www.encodeproject.org/files/ENCFF321BLF/@@download/ENCFF321BLF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF972DVY bigWig signal p-value ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF326YEF, ENCFF745OFI, ENCFF797XBF, ENCFF834ZUW 1036666710 ENCODE Processing Pipeline cc8b969ac6c7f0381f2343ca7d53878c https://www.encodeproject.org/files/ENCFF972DVY/@@download/ENCFF972DVY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF344LQM bigWig fold change over control ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF745OFI, ENCFF834ZUW 797820947 ENCODE Processing Pipeline 4aea4b939bda09ee5a4ca0348e52617e https://www.encodeproject.org/files/ENCFF344LQM/@@download/ENCFF344LQM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF263BJN bigWig fold change over control ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF797XBF, ENCFF834ZUW 736671029 ENCODE Processing Pipeline 854bb7b9204fead82b7eb45bce0ce80f https://www.encodeproject.org/files/ENCFF263BJN/@@download/ENCFF263BJN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF641TKP bigWig fold change over control ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF326YEF, ENCFF745OFI, ENCFF797XBF, ENCFF834ZUW 1110480779 ENCODE Processing Pipeline fce761cdd3f0502d8a54d36849f70681 https://www.encodeproject.org/files/ENCFF641TKP/@@download/ENCFF641TKP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF704IOM bed narrowPeak replicated peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF050EFK, ENCFF406CXB, ENCFF937EMM 1003047 ENCODE Processing Pipeline 7e0beec3923792d1a497fc1ba259bb88 https://www.encodeproject.org/files/ENCFF704IOM/@@download/ENCFF704IOM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF070HIR bigBed narrowPeak replicated peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF704IOM 2209363 ENCODE Processing Pipeline 926fac2616e541479b5fd9579f0a7cf9 https://www.encodeproject.org/files/ENCFF070HIR/@@download/ENCFF070HIR.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF572LFO bam unfiltered alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF024BJF 2191008644 ENCODE Processing Pipeline a4677a8238220d1eebc91e011162b461 https://www.encodeproject.org/files/ENCFF572LFO/@@download/ENCFF572LFO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF390FZX bam unfiltered alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF842RMF 2267197026 ENCODE Processing Pipeline 80acdb4e983ace35fba72e6a3a3b0889 https://www.encodeproject.org/files/ENCFF390FZX/@@download/ENCFF390FZX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF302JPF bam alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF024BJF 1482416411 ENCODE Processing Pipeline 4180116c917f020d0456b849ef41b102 https://www.encodeproject.org/files/ENCFF302JPF/@@download/ENCFF302JPF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF218JCM bam alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF842RMF 1390805493 ENCODE Processing Pipeline f98f12d3311b1958fc69def94f54ad62 https://www.encodeproject.org/files/ENCFF218JCM/@@download/ENCFF218JCM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF374VVM bed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF302JPF, ENCFF643WUI 804787 ENCODE Processing Pipeline 3fdf00557221f4a0a8e64032564a2707 https://www.encodeproject.org/files/ENCFF374VVM/@@download/ENCFF374VVM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF079KJE bed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF218JCM, ENCFF916TFR 836864 ENCODE Processing Pipeline f46c547e2573d0917c2a05d3d09ca0d6 https://www.encodeproject.org/files/ENCFF079KJE/@@download/ENCFF079KJE.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF858CXI bed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF218JCM, ENCFF302JPF, ENCFF643WUI, ENCFF916TFR 938837 ENCODE Processing Pipeline 9d36253c7b6123065546032884d9895a https://www.encodeproject.org/files/ENCFF858CXI/@@download/ENCFF858CXI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF474LEH bigBed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF374VVM 2512357 ENCODE Processing Pipeline f93047173f72f26fc6158971fec6b38c https://www.encodeproject.org/files/ENCFF474LEH/@@download/ENCFF474LEH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF293GRM bigBed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079KJE 2625225 ENCODE Processing Pipeline fac820bc99d37d4ba65eb5ab1b566d64 https://www.encodeproject.org/files/ENCFF293GRM/@@download/ENCFF293GRM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF836MYW bigBed narrowPeak peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF858CXI 2784598 ENCODE Processing Pipeline 5bbe10134c52b0b7b1a02344556f2cfb https://www.encodeproject.org/files/ENCFF836MYW/@@download/ENCFF836MYW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF700MUS bigWig signal p-value ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF302JPF, ENCFF643WUI 617454786 ENCODE Processing Pipeline f7bf0a847d97b796a3b0190af8febba7 https://www.encodeproject.org/files/ENCFF700MUS/@@download/ENCFF700MUS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF115WYO bigWig signal p-value ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF218JCM, ENCFF916TFR 498288673 ENCODE Processing Pipeline 2869c083f236f49c602389d4e09a2094 https://www.encodeproject.org/files/ENCFF115WYO/@@download/ENCFF115WYO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF990TKE bigWig signal p-value ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF218JCM, ENCFF302JPF, ENCFF643WUI, ENCFF916TFR 972245036 ENCODE Processing Pipeline c9b9407084b747c8393f919c4a37981d https://www.encodeproject.org/files/ENCFF990TKE/@@download/ENCFF990TKE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF581HZS bigWig fold change over control ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF302JPF, ENCFF643WUI 635071019 ENCODE Processing Pipeline 1f9716109b9e69e3944381f5f77d0541 https://www.encodeproject.org/files/ENCFF581HZS/@@download/ENCFF581HZS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF694LZL bigWig fold change over control ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF218JCM, ENCFF916TFR 526855764 ENCODE Processing Pipeline 85bf7760354aca28b7b5a4e792a0eb96 https://www.encodeproject.org/files/ENCFF694LZL/@@download/ENCFF694LZL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF777NSG bigWig fold change over control ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF218JCM, ENCFF302JPF, ENCFF643WUI, ENCFF916TFR 1180983514 ENCODE Processing Pipeline dae94c23445b7db7d24e51986e170069 https://www.encodeproject.org/files/ENCFF777NSG/@@download/ENCFF777NSG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF293NIL bed narrowPeak replicated peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079KJE, ENCFF374VVM, ENCFF858CXI 1030497 ENCODE Processing Pipeline 9b951656a7d02a6b2dae85221620623a https://www.encodeproject.org/files/ENCFF293NIL/@@download/ENCFF293NIL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF452UCB bigBed narrowPeak replicated peaks ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF293NIL 2264597 ENCODE Processing Pipeline 96ca8669eb40c8e195ed3b50df4d8cf5 https://www.encodeproject.org/files/ENCFF452UCB/@@download/ENCFF452UCB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF178ESG fastq reads ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2358371750 Bing Ren, UCSD 49b6ba781264c8226969d6e4c0df858c SRA:SRR3652232 https://www.encodeproject.org/files/ENCFF178ESG/@@download/ENCFF178ESG.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF431MBE fastq reads ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2525430847 Bing Ren, UCSD 9e0d28fa98d4b314b35f607f07719df2 SRA:SRR3652231 https://www.encodeproject.org/files/ENCFF431MBE/@@download/ENCFF431MBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released mild to moderate bottlenecking, inconsistent platforms ENCFF513QBC bam alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF431MBE, ENCFF806TVZ 1749108884 ENCODE Processing Pipeline 6febfde09aafe4ee58ebabb3cbc923d2 https://www.encodeproject.org/files/ENCFF513QBC/@@download/ENCFF513QBC.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF067AKC bam alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF178ESG, ENCFF806TVZ 1648152232 ENCODE Processing Pipeline 3420704b1cb966f85a83bd85b24706d7 https://www.encodeproject.org/files/ENCFF067AKC/@@download/ENCFF067AKC.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF521MVA bed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF513QBC, ENCFF834ZUW 571006 ENCODE Processing Pipeline 4a8a57ce7c5ea8bcdbc40abec11eb321 https://www.encodeproject.org/files/ENCFF521MVA/@@download/ENCFF521MVA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF557NYG bed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF067AKC, ENCFF326YEF, ENCFF513QBC, ENCFF834ZUW 632616 ENCODE Processing Pipeline 010b760e6420466d0df3b4b667e75170 https://www.encodeproject.org/files/ENCFF557NYG/@@download/ENCFF557NYG.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF992YMV bed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF067AKC, ENCFF326YEF, ENCFF834ZUW 569426 ENCODE Processing Pipeline 82c1899e8c05b0d07afded692b138b11 https://www.encodeproject.org/files/ENCFF992YMV/@@download/ENCFF992YMV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF065VMG bigBed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF521MVA 1761114 ENCODE Processing Pipeline 67cb0c8f9145b9bc7ce95e6029469f5c https://www.encodeproject.org/files/ENCFF065VMG/@@download/ENCFF065VMG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF574IZZ bigWig signal p-value ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF067AKC, ENCFF326YEF, ENCFF834ZUW 828171015 ENCODE Processing Pipeline 6e871e9509b47336f03a057aa9d75405 https://www.encodeproject.org/files/ENCFF574IZZ/@@download/ENCFF574IZZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF197QXQ bigBed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF992YMV 1779953 ENCODE Processing Pipeline 511d91043397c52ee82afe2522ddceb3 https://www.encodeproject.org/files/ENCFF197QXQ/@@download/ENCFF197QXQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF421NDH bigBed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF557NYG 1847116 ENCODE Processing Pipeline 13b376ee471516347188441a3d9983e7 https://www.encodeproject.org/files/ENCFF421NDH/@@download/ENCFF421NDH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF214IMH bigWig signal p-value ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF513QBC, ENCFF834ZUW 788757720 ENCODE Processing Pipeline df46b51b3ec4a5b8990da1f3d1acf44e https://www.encodeproject.org/files/ENCFF214IMH/@@download/ENCFF214IMH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF160UGY bigWig fold change over control ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF067AKC, ENCFF326YEF, ENCFF834ZUW 757175713 ENCODE Processing Pipeline 26bfb974f334cd4e2817828035f1c252 https://www.encodeproject.org/files/ENCFF160UGY/@@download/ENCFF160UGY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF611WON bigWig signal p-value ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF067AKC, ENCFF326YEF, ENCFF513QBC, ENCFF834ZUW 1125158691 ENCODE Processing Pipeline ad5e073b8bb6d1089e01c0c297d248a6 https://www.encodeproject.org/files/ENCFF611WON/@@download/ENCFF611WON.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF077CNR bigWig fold change over control ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF513QBC, ENCFF834ZUW 846863000 ENCODE Processing Pipeline 86b71c56eeeb0aa0c336d7050de1bb29 https://www.encodeproject.org/files/ENCFF077CNR/@@download/ENCFF077CNR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF193CEH bigWig fold change over control ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF067AKC, ENCFF326YEF, ENCFF513QBC, ENCFF834ZUW 1167961559 ENCODE Processing Pipeline 21f2fddf200ef14378755ac3ea3da832 https://www.encodeproject.org/files/ENCFF193CEH/@@download/ENCFF193CEH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF907DNF bed narrowPeak replicated peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF521MVA, ENCFF557NYG, ENCFF992YMV 699288 ENCODE Processing Pipeline 17b38ef3f48431dfaa7739e4f7fa8e14 https://www.encodeproject.org/files/ENCFF907DNF/@@download/ENCFF907DNF.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF503CJO bigBed narrowPeak replicated peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF907DNF 1605640 ENCODE Processing Pipeline f284a070b42e1b0e4a95c9f0165c2f0b https://www.encodeproject.org/files/ENCFF503CJO/@@download/ENCFF503CJO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF483KCB bam unfiltered alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF178ESG 2625848908 ENCODE Processing Pipeline 4485ec58e9979415a9077cdb988175d2 https://www.encodeproject.org/files/ENCFF483KCB/@@download/ENCFF483KCB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF190MMY bam unfiltered alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF431MBE 2805489097 ENCODE Processing Pipeline 39a20fe1d0aa2870fdb67479ed8a5c9f https://www.encodeproject.org/files/ENCFF190MMY/@@download/ENCFF190MMY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF196TGU bam alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF431MBE 1748757859 ENCODE Processing Pipeline 3f9b7da3f3e5f380116ccace9bc47692 https://www.encodeproject.org/files/ENCFF196TGU/@@download/ENCFF196TGU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF960GUP bam alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF178ESG 1647813835 ENCODE Processing Pipeline c7de190994de8eedbd3ae48272320d9c https://www.encodeproject.org/files/ENCFF960GUP/@@download/ENCFF960GUP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF478JFK bed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF643WUI, ENCFF960GUP 556729 ENCODE Processing Pipeline d2577b2206686bb65f7f22545ad520a7 https://www.encodeproject.org/files/ENCFF478JFK/@@download/ENCFF478JFK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF648GMJ bed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF196TGU, ENCFF916TFR 537133 ENCODE Processing Pipeline a4131788287c783e3a1067d3ec83c8e6 https://www.encodeproject.org/files/ENCFF648GMJ/@@download/ENCFF648GMJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF203MWK bed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF196TGU, ENCFF643WUI, ENCFF916TFR, ENCFF960GUP 641792 ENCODE Processing Pipeline 3326cccff794cd7b5c8c5243e126784a https://www.encodeproject.org/files/ENCFF203MWK/@@download/ENCFF203MWK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF153EUA bigBed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF478JFK 1756978 ENCODE Processing Pipeline 7605ab984a3a7f9c1381c564f2dfb729 https://www.encodeproject.org/files/ENCFF153EUA/@@download/ENCFF153EUA.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF061CTB bigBed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF648GMJ 1735346 ENCODE Processing Pipeline d00a3a68f25202f819e299bac2ef433e https://www.encodeproject.org/files/ENCFF061CTB/@@download/ENCFF061CTB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF956DKU bigBed narrowPeak peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF203MWK 1864526 ENCODE Processing Pipeline f94061a69d74d6ed0cdf3c0de1bdc0e2 https://www.encodeproject.org/files/ENCFF956DKU/@@download/ENCFF956DKU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF967BAN bigWig signal p-value ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF643WUI, ENCFF960GUP 664078877 ENCODE Processing Pipeline abccd6e93d7cd0dedd25908945612611 https://www.encodeproject.org/files/ENCFF967BAN/@@download/ENCFF967BAN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF591XKY bigWig signal p-value ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF196TGU, ENCFF916TFR 614435776 ENCODE Processing Pipeline 0caa3375d83a4d20a6a6155e39480d82 https://www.encodeproject.org/files/ENCFF591XKY/@@download/ENCFF591XKY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF224ECM bigWig signal p-value ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF196TGU, ENCFF643WUI, ENCFF916TFR, ENCFF960GUP 981981129 ENCODE Processing Pipeline 0d818a7028de0ac18bbcad5f400d2c0e https://www.encodeproject.org/files/ENCFF224ECM/@@download/ENCFF224ECM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF732LVZ bigWig fold change over control ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF643WUI, ENCFF960GUP 628325610 ENCODE Processing Pipeline 59e3f81b12d7165d943c91e02b5ff4e2 https://www.encodeproject.org/files/ENCFF732LVZ/@@download/ENCFF732LVZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF499FYV bigWig fold change over control ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF196TGU, ENCFF916TFR 604731026 ENCODE Processing Pipeline dce53bc36c35b5ff35a19eb6ae43d95c https://www.encodeproject.org/files/ENCFF499FYV/@@download/ENCFF499FYV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF724CMA bigWig fold change over control ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF196TGU, ENCFF643WUI, ENCFF916TFR, ENCFF960GUP 1215496233 ENCODE Processing Pipeline 0482e22ee3f838b8136c68f1b318d6c8 https://www.encodeproject.org/files/ENCFF724CMA/@@download/ENCFF724CMA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF642VCS bigBed narrowPeak replicated peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF705XQD 1604576 ENCODE Processing Pipeline e8005720d1493b7694064bdd6ae08ee7 https://www.encodeproject.org/files/ENCFF642VCS/@@download/ENCFF642VCS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF705XQD bed narrowPeak replicated peaks ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF203MWK, ENCFF478JFK, ENCFF648GMJ 698447 ENCODE Processing Pipeline f94b8a2863ae8b625bd22652373018f8 https://www.encodeproject.org/files/ENCFF705XQD/@@download/ENCFF705XQD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002ETA fastq reads ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 809506570 Bing Ren, UCSD b336c2d4e10f09bd201638a5502d6cb5 SRA:SRR3651394 https://www.encodeproject.org/files/ENCFF002ETA/@@download/ENCFF002ETA.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXR/ released low read length, control low read depth, low read depth ENCFF002ETB fastq reads ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 835795602 Bing Ren, UCSD 19eddf5066ef0b7a21c98ee16d1ba65f SRA:SRR3651395 https://www.encodeproject.org/files/ENCFF002ETB/@@download/ENCFF002ETB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXT/ released low read length, control low read depth, low read depth ENCFF898DGL bam alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETA, ENCFF806TVZ 675291681 ENCODE Processing Pipeline b1ab97fb1b5582b7c85ec073fae5e846 https://www.encodeproject.org/files/ENCFF898DGL/@@download/ENCFF898DGL.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF346KPQ bam alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETB, ENCFF806TVZ 699269447 ENCODE Processing Pipeline 9b7f324c832956bc56b17d6d62718664 https://www.encodeproject.org/files/ENCFF346KPQ/@@download/ENCFF346KPQ.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF824UZE bed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF720BSQ, ENCFF898DGL 938295 ENCODE Processing Pipeline 0f060260ef0b2a47205f50289cb65b38 https://www.encodeproject.org/files/ENCFF824UZE/@@download/ENCFF824UZE.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF602NIG bed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF346KPQ, ENCFF461NAJ, ENCFF720BSQ, ENCFF898DGL 1059651 ENCODE Processing Pipeline f7afc6436b5e259722ce609bb0d315b2 https://www.encodeproject.org/files/ENCFF602NIG/@@download/ENCFF602NIG.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF966YTD bigBed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF699QFP 3053587 ENCODE Processing Pipeline b4acdec06cbf3c470f5bd23b15e9d5ed https://www.encodeproject.org/files/ENCFF966YTD/@@download/ENCFF966YTD.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF699QFP bed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF346KPQ, ENCFF461NAJ 1000907 ENCODE Processing Pipeline 0be636aedbd62f10a60b85ad1e5b5967 https://www.encodeproject.org/files/ENCFF699QFP/@@download/ENCFF699QFP.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF628DXY bigBed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF824UZE 2895745 ENCODE Processing Pipeline f43bc8fba5c99b050a201e392c74bc6a https://www.encodeproject.org/files/ENCFF628DXY/@@download/ENCFF628DXY.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF906XAJ bigBed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF602NIG 3192615 ENCODE Processing Pipeline 771fccbced2888dd85f9e5938c242c76 https://www.encodeproject.org/files/ENCFF906XAJ/@@download/ENCFF906XAJ.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF663ZCZ bigWig fold change over control ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF720BSQ, ENCFF898DGL 303704874 ENCODE Processing Pipeline d17e7a94dccb902356ebdc596f2ef55c https://www.encodeproject.org/files/ENCFF663ZCZ/@@download/ENCFF663ZCZ.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF157TKK bigWig signal p-value ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF346KPQ, ENCFF461NAJ, ENCFF720BSQ, ENCFF898DGL 693757033 ENCODE Processing Pipeline 4c46a9952e0d142fdd8ec6955b9cbaae https://www.encodeproject.org/files/ENCFF157TKK/@@download/ENCFF157TKK.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF018GDE bigWig signal p-value ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF720BSQ, ENCFF898DGL 345471028 ENCODE Processing Pipeline 74587d397aa2c9e5a4e58cd47ebedffb https://www.encodeproject.org/files/ENCFF018GDE/@@download/ENCFF018GDE.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF508IJU bigWig signal p-value ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF346KPQ, ENCFF461NAJ 376399003 ENCODE Processing Pipeline 2cdf4cc5b3f293510b5a904f997c63d8 https://www.encodeproject.org/files/ENCFF508IJU/@@download/ENCFF508IJU.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF792XWK bigWig fold change over control ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF346KPQ, ENCFF461NAJ, ENCFF720BSQ, ENCFF898DGL 670534629 ENCODE Processing Pipeline d0723cb16ae693c63c62ecd1424aa362 https://www.encodeproject.org/files/ENCFF792XWK/@@download/ENCFF792XWK.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF650CDN bigWig fold change over control ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF346KPQ, ENCFF461NAJ 313411227 ENCODE Processing Pipeline 930bae3366ee882d3eb60dbdbafb1d58 https://www.encodeproject.org/files/ENCFF650CDN/@@download/ENCFF650CDN.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF399XMA bed narrowPeak replicated peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF602NIG, ENCFF699QFP, ENCFF824UZE 1073912 ENCODE Processing Pipeline 2c6dc303f286171c92b0fe225c516f36 https://www.encodeproject.org/files/ENCFF399XMA/@@download/ENCFF399XMA.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF741APA bigBed narrowPeak replicated peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF399XMA 2385357 ENCODE Processing Pipeline 66f695025628bf18a8fa2e57ebea8ec9 https://www.encodeproject.org/files/ENCFF741APA/@@download/ENCFF741APA.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF729UAY bam unfiltered alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETA, ENCFF018NEO 1013421594 ENCODE Processing Pipeline 5fcb5a0d4bb095cdd909d3975bc49670 https://www.encodeproject.org/files/ENCFF729UAY/@@download/ENCFF729UAY.bam mm10 released low read length, control low read depth, low read depth ENCFF910JPE bam unfiltered alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETB, ENCFF018NEO 1052421249 ENCODE Processing Pipeline f69b2aa43752f5d1d20c413e2390ce8a https://www.encodeproject.org/files/ENCFF910JPE/@@download/ENCFF910JPE.bam mm10 released low read length, control low read depth, low read depth ENCFF669SYQ bam alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETA, ENCFF018NEO 675156753 ENCODE Processing Pipeline 847c8c981422dcb629bb011ec672007d https://www.encodeproject.org/files/ENCFF669SYQ/@@download/ENCFF669SYQ.bam mm10 released low read length, control low read depth, low read depth ENCFF393XAJ bam alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETB, ENCFF018NEO 699121266 ENCODE Processing Pipeline 75d97d531f92cefc6cbc16cf7dc9c41a https://www.encodeproject.org/files/ENCFF393XAJ/@@download/ENCFF393XAJ.bam mm10 released low read length, control low read depth, low read depth ENCFF909WJY bed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF393XAJ, ENCFF631VBQ 992648 ENCODE Processing Pipeline c989d8c5285f5fbc1f5c2edd450116c0 https://www.encodeproject.org/files/ENCFF909WJY/@@download/ENCFF909WJY.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF615WAU bigBed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF593OKF 3194600 ENCODE Processing Pipeline 1f38a120899b25067b64c08136626524 https://www.encodeproject.org/files/ENCFF615WAU/@@download/ENCFF615WAU.bigBed mm10 released low read length, control low read depth, low read depth ENCFF283YLV bed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF669SYQ 939059 ENCODE Processing Pipeline 2ac1fc22798d1f26d231680eabe8245c https://www.encodeproject.org/files/ENCFF283YLV/@@download/ENCFF283YLV.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF230ECD bigBed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF283YLV 2897266 ENCODE Processing Pipeline c51553e808047d177132b664e19e8201 https://www.encodeproject.org/files/ENCFF230ECD/@@download/ENCFF230ECD.bigBed mm10 released low read length, control low read depth, low read depth ENCFF574ZQY bigWig signal p-value ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF669SYQ 316164250 ENCODE Processing Pipeline f10cd7b6aada5a71024f43f521cb0b4a https://www.encodeproject.org/files/ENCFF574ZQY/@@download/ENCFF574ZQY.bigWig mm10 released low read length, control low read depth, low read depth ENCFF593OKF bed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF393XAJ, ENCFF568KLX, ENCFF631VBQ, ENCFF669SYQ 1060229 ENCODE Processing Pipeline 4b4dc0ea48d45b1888432689ec3b13d0 https://www.encodeproject.org/files/ENCFF593OKF/@@download/ENCFF593OKF.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF569AAH bigBed narrowPeak peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF909WJY 3040577 ENCODE Processing Pipeline 66cba3c84f1864f0e59499723527fb39 https://www.encodeproject.org/files/ENCFF569AAH/@@download/ENCFF569AAH.bigBed mm10 released low read length, control low read depth, low read depth ENCFF945TDR bigWig signal p-value ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF393XAJ, ENCFF631VBQ 331471764 ENCODE Processing Pipeline 0ac04b59fcb836491f3175e16b52cc5b https://www.encodeproject.org/files/ENCFF945TDR/@@download/ENCFF945TDR.bigWig mm10 released low read length, control low read depth, low read depth ENCFF679NNV bigWig signal p-value ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF393XAJ, ENCFF568KLX, ENCFF631VBQ, ENCFF669SYQ 585342409 ENCODE Processing Pipeline e6b1b613b86594837786197cbce8eb9e https://www.encodeproject.org/files/ENCFF679NNV/@@download/ENCFF679NNV.bigWig mm10 released low read length, control low read depth, low read depth ENCFF089TZY bigWig fold change over control ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF669SYQ 303430137 ENCODE Processing Pipeline 6604d58217e6ba8866bba120c0207e36 https://www.encodeproject.org/files/ENCFF089TZY/@@download/ENCFF089TZY.bigWig mm10 released low read length, control low read depth, low read depth ENCFF732RDS bigWig fold change over control ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF393XAJ, ENCFF631VBQ 325583718 ENCODE Processing Pipeline ff97b50c4cf89265c4dbd4ffeab37730 https://www.encodeproject.org/files/ENCFF732RDS/@@download/ENCFF732RDS.bigWig mm10 released low read length, control low read depth, low read depth ENCFF854ASW bigWig fold change over control ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF393XAJ, ENCFF568KLX, ENCFF631VBQ, ENCFF669SYQ 672319728 ENCODE Processing Pipeline 642b58c74d73bb84c2e8a82828a08a85 https://www.encodeproject.org/files/ENCFF854ASW/@@download/ENCFF854ASW.bigWig mm10 released low read length, control low read depth, low read depth ENCFF500OFF bigBed narrowPeak replicated peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF051MHA 2385758 ENCODE Processing Pipeline 79376cf498d61de6adafd6bc4bdd257a https://www.encodeproject.org/files/ENCFF500OFF/@@download/ENCFF500OFF.bigBed mm10 released low read length, control low read depth, low read depth ENCFF051MHA bed narrowPeak replicated peaks ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF283YLV, ENCFF593OKF, ENCFF909WJY 1074353 ENCODE Processing Pipeline 250f079953e013cb513cee739b8716a0 https://www.encodeproject.org/files/ENCFF051MHA/@@download/ENCFF051MHA.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF001JZA bam alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JZM 498916863 Bing Ren, UCSD 0c19936ac1c7876caff5b64938e6329e https://www.encodeproject.org/files/ENCFF001JZA/@@download/ENCFF001JZA.bam mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001JZB bam alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JZK 434887691 Bing Ren, UCSD e6cf14ccad0adbfde72401cda449de1a https://www.encodeproject.org/files/ENCFF001JZB/@@download/ENCFF001JZB.bam mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001JZC bigBed broadPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XWA 576646 Bing Ren, UCSD 5b11801d3a2c54890bbf6c6592cec5c5 https://www.encodeproject.org/files/ENCFF001JZC/@@download/ENCFF001JZC.bigBed mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001JZG bigWig signal ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JZA, ENCFF001JZB 61442840 Bing Ren, UCSD 90d1f04c9e7069e102de559a0828bfb6 https://www.encodeproject.org/files/ENCFF001JZG/@@download/ENCFF001JZG.bigWig mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001JZK fastq reads ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 414433190 Bing Ren, UCSD 57320eae1a7a49daff03e845a69a942b https://www.encodeproject.org/files/ENCFF001JZK/@@download/ENCFF001JZK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KAK/ released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001JZM fastq reads ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 473516304 Bing Ren, UCSD d748beae5add45d7b35a5a4e1a95e755 https://www.encodeproject.org/files/ENCFF001JZM/@@download/ENCFF001JZM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KAM/ released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001XWA bed broadPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JZA, ENCFF001JZB 351362 Bing Ren, UCSD f65bb208131e587055e923610e3562ca https://www.encodeproject.org/files/ENCFF001XWA/@@download/ENCFF001XWA.bed.gz mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF556CTU bam unfiltered alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JZK, ENCFF018NEO 469424288 ENCODE Processing Pipeline 9f3fcc0ad5aeac468e6daf4fe9804aa0 https://www.encodeproject.org/files/ENCFF556CTU/@@download/ENCFF556CTU.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF648RJM bam unfiltered alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JZM, ENCFF018NEO 544987822 ENCODE Processing Pipeline 3eda4fb86d30f894bb2e9e0657c9b90f https://www.encodeproject.org/files/ENCFF648RJM/@@download/ENCFF648RJM.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF987PDS bam alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JZK, ENCFF018NEO 356172620 ENCODE Processing Pipeline 3d9a240635681be0c077798fd4fe95cd https://www.encodeproject.org/files/ENCFF987PDS/@@download/ENCFF987PDS.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF461JKM bam alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JZM, ENCFF018NEO 393436700 ENCODE Processing Pipeline 8860a7b3e0256755aa99c37cb525bfb8 https://www.encodeproject.org/files/ENCFF461JKM/@@download/ENCFF461JKM.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF493FBI bed narrowPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF461JKM 1201541 ENCODE Processing Pipeline 813f7d91502c1c72223570b7fae52da0 https://www.encodeproject.org/files/ENCFF493FBI/@@download/ENCFF493FBI.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF650VPM bigBed narrowPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF425XOO 4277825 ENCODE Processing Pipeline b20727d6871bef47b6af4a580e8f6052 https://www.encodeproject.org/files/ENCFF650VPM/@@download/ENCFF650VPM.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF425XOO bed narrowPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF987PDS 1520799 ENCODE Processing Pipeline a28b2a611d9b0b857fcc90996e40dda9 https://www.encodeproject.org/files/ENCFF425XOO/@@download/ENCFF425XOO.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF196OUH bigWig signal p-value ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF461JKM 324198107 ENCODE Processing Pipeline 60e629e2bffffdf2b112c29e47b4316a https://www.encodeproject.org/files/ENCFF196OUH/@@download/ENCFF196OUH.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF082ROM bed narrowPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF461JKM, ENCFF987PDS 1581309 ENCODE Processing Pipeline 1cc7df9a5e944fe30949abfd688e1e60 https://www.encodeproject.org/files/ENCFF082ROM/@@download/ENCFF082ROM.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF473HKE bigBed narrowPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF493FBI 3654201 ENCODE Processing Pipeline 9c4da203b71c5d11736d0822ccb118ef https://www.encodeproject.org/files/ENCFF473HKE/@@download/ENCFF473HKE.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF498TOB bigBed narrowPeak peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF082ROM 4433256 ENCODE Processing Pipeline b5cad810246d7bc9e17fcc34f4786c92 https://www.encodeproject.org/files/ENCFF498TOB/@@download/ENCFF498TOB.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF887KIT bigWig signal p-value ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF461JKM, ENCFF987PDS 338131738 ENCODE Processing Pipeline 19fa5f6c942c18ced105d248479cd66b https://www.encodeproject.org/files/ENCFF887KIT/@@download/ENCFF887KIT.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF696PAP bigWig signal p-value ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF987PDS 273715420 ENCODE Processing Pipeline c32fcbe8baf3a009ecba74d1a242b47c https://www.encodeproject.org/files/ENCFF696PAP/@@download/ENCFF696PAP.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF911HPQ bed narrowPeak replicated peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF082ROM, ENCFF425XOO, ENCFF493FBI 1260370 ENCODE Processing Pipeline b24de5c41b13cf16df3f7e3999c17b98 https://www.encodeproject.org/files/ENCFF911HPQ/@@download/ENCFF911HPQ.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF678CPQ bigWig fold change over control ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF987PDS 190921164 ENCODE Processing Pipeline 1991b46e522034db186fd173e6256821 https://www.encodeproject.org/files/ENCFF678CPQ/@@download/ENCFF678CPQ.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF156PCV bigWig fold change over control ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF461JKM 224134526 ENCODE Processing Pipeline a707153871c58610db858f7b2cf179f1 https://www.encodeproject.org/files/ENCFF156PCV/@@download/ENCFF156PCV.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF234IJR bigWig fold change over control ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF461JKM, ENCFF987PDS 342240697 ENCODE Processing Pipeline 52620da1dd1d17b855ab51b2a80fd943 https://www.encodeproject.org/files/ENCFF234IJR/@@download/ENCFF234IJR.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF912UEK bigBed narrowPeak replicated peaks ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF911HPQ 2610763 ENCODE Processing Pipeline d1d4377ec4c3bb5c6696b5f10222778d https://www.encodeproject.org/files/ENCFF912UEK/@@download/ENCFF912UEK.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001LOL bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LOV 982181210 Bing Ren, UCSD 9957bc39b7cabafafbc5646a5ed75ba2 https://www.encodeproject.org/files/ENCFF001LOL/@@download/ENCFF001LOL.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001LOM bigBed broadPeak peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAR 635120 Bing Ren, UCSD 3f174a6e0220c6a13d99138e4372efad https://www.encodeproject.org/files/ENCFF001LOM/@@download/ENCFF001LOM.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001LON bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LOX 1099290550 Bing Ren, UCSD e67434e9f374ed2366fd6efb7e5e71a3 https://www.encodeproject.org/files/ENCFF001LON/@@download/ENCFF001LON.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001LOO bigWig signal ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LOL, ENCFF001LON 77607058 Bing Ren, UCSD 7a9f98cfb026efc2ecc6294bd409df21 https://www.encodeproject.org/files/ENCFF001LOO/@@download/ENCFF001LOO.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001LOV fastq reads ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 1169795981 Bing Ren, UCSD 709589a6b7e4a99a81104f63e602d14d https://www.encodeproject.org/files/ENCFF001LOV/@@download/ENCFF001LOV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001KPR/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001LOX fastq reads ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 1219413862 Bing Ren, UCSD d6ddb0323a9faeac7a5b85fc4cda51a1 https://www.encodeproject.org/files/ENCFF001LOX/@@download/ENCFF001LOX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001KPS/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001YAR bed broadPeak peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LOL, ENCFF001LON 373626 Bing Ren, UCSD 8a8326b4b394f658c656e817c6360d04 https://www.encodeproject.org/files/ENCFF001YAR/@@download/ENCFF001YAR.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF970BCL bam unfiltered alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOV, ENCFF018NEO 1186412323 ENCODE Processing Pipeline 034f3adfbc841385f2e12d3d076db106 https://www.encodeproject.org/files/ENCFF970BCL/@@download/ENCFF970BCL.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF140PJE bam unfiltered alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOX, ENCFF018NEO 1336566474 ENCODE Processing Pipeline 4ee54eb50db7620a0f19764643635f55 https://www.encodeproject.org/files/ENCFF140PJE/@@download/ENCFF140PJE.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF796FRP bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOX, ENCFF018NEO 733007994 ENCODE Processing Pipeline bc6406cd26a4a6efa716e3b575721dab https://www.encodeproject.org/files/ENCFF796FRP/@@download/ENCFF796FRP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF878FUZ bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOV, ENCFF018NEO 433815532 ENCODE Processing Pipeline bdbe1228ba154432285e481865455e0b https://www.encodeproject.org/files/ENCFF878FUZ/@@download/ENCFF878FUZ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF779CUB bigWig signal p-value ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF878FUZ 382194850 ENCODE Processing Pipeline 900a6550d99b3e4c914df9afc6cfd302 https://www.encodeproject.org/files/ENCFF779CUB/@@download/ENCFF779CUB.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF755RFZ bigWig signal p-value ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF796FRP 404047236 ENCODE Processing Pipeline c4c98c3f4b2f1f9c4bbc4edf123c7e1f https://www.encodeproject.org/files/ENCFF755RFZ/@@download/ENCFF755RFZ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF124UGS bigWig signal p-value ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF545AEW, ENCFF796FRP, ENCFF878FUZ 625320786 ENCODE Processing Pipeline 59b036e15a87302b50d1eb58fbd08c3d https://www.encodeproject.org/files/ENCFF124UGS/@@download/ENCFF124UGS.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF291FCH bigWig fold change over control ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF878FUZ 193591420 ENCODE Processing Pipeline 2d7804bea99b52fd736964c4801f31fd https://www.encodeproject.org/files/ENCFF291FCH/@@download/ENCFF291FCH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF022QBU bigWig fold change over control ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF796FRP 333004186 ENCODE Processing Pipeline f26452d326ec549fa6bce1ad0d2f202e https://www.encodeproject.org/files/ENCFF022QBU/@@download/ENCFF022QBU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF378CWR bigWig fold change over control ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF545AEW, ENCFF796FRP, ENCFF878FUZ 581512827 ENCODE Processing Pipeline 057763d5af1f2dff14e8dc63b9e67c0e https://www.encodeproject.org/files/ENCFF378CWR/@@download/ENCFF378CWR.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF496XMO bed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF878FUZ 4525783 ENCODE Processing Pipeline 9bba73ad1bf16b715c3adf341d81bc49 https://www.encodeproject.org/files/ENCFF496XMO/@@download/ENCFF496XMO.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF410BBY bigBed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF496XMO 10221966 ENCODE Processing Pipeline 6a486115d43c6d070f3d2fb9193b02da https://www.encodeproject.org/files/ENCFF410BBY/@@download/ENCFF410BBY.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF741HGT bed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF796FRP 5360015 ENCODE Processing Pipeline c0d9c029cb22d8304bb5834505c93244 https://www.encodeproject.org/files/ENCFF741HGT/@@download/ENCFF741HGT.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF617ZHN bigBed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF741HGT 12951330 ENCODE Processing Pipeline 75773cff5c1ade79451e599297299455 https://www.encodeproject.org/files/ENCFF617ZHN/@@download/ENCFF617ZHN.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF285RDR bed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF545AEW, ENCFF796FRP, ENCFF878FUZ 6030109 ENCODE Processing Pipeline 8f59beb8610357214aab4c47ec866abc https://www.encodeproject.org/files/ENCFF285RDR/@@download/ENCFF285RDR.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF482BMK bigBed narrowPeak peaks and background as input for IDR ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF285RDR 13295424 ENCODE Processing Pipeline 165726b17a855f4ccbe4b34d6b63d896 https://www.encodeproject.org/files/ENCFF482BMK/@@download/ENCFF482BMK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF621EVL bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF659OSP 1103512 ENCODE Processing Pipeline da3fd495a300124ca805d229f69b8d62 https://www.encodeproject.org/files/ENCFF621EVL/@@download/ENCFF621EVL.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF731BAQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF945WJZ 1202793 ENCODE Processing Pipeline 80f8bc3f3fa946b9ca6a62c7c489405a https://www.encodeproject.org/files/ENCFF731BAQ/@@download/ENCFF731BAQ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF659OSP bed narrowPeak conservative idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF285RDR, ENCFF496XMO, ENCFF547MET, ENCFF741HGT 445380 ENCODE Processing Pipeline b68fee5a4772a6b9a03371c9ba4ab017 https://www.encodeproject.org/files/ENCFF659OSP/@@download/ENCFF659OSP.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF945WJZ bed narrowPeak optimal idr thresholded peaks ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF285RDR, ENCFF496XMO, ENCFF547MET, ENCFF741HGT 501803 ENCODE Processing Pipeline 3537a6ecae7ae45e84420d2a443875e2 https://www.encodeproject.org/files/ENCFF945WJZ/@@download/ENCFF945WJZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001ZUY fastq reads ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 615296449 Bing Ren, UCSD 918c40634e884cb224880a68d8b8be3f SRA:SRR3651841 https://www.encodeproject.org/files/ENCFF001ZUY/@@download/ENCFF001ZUY.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF001ZVC fastq reads ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 870226721 Bing Ren, UCSD aa364fea6a3ac2fca50f9008a1f47133 SRA:SRR3651842 https://www.encodeproject.org/files/ENCFF001ZVC/@@download/ENCFF001ZVC.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF643JSW bam unfiltered alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZVC, ENCFF806TVZ 1136233214 ENCODE Processing Pipeline c1485bd54405ba9dcfb3b4cf6d49cf6e https://www.encodeproject.org/files/ENCFF643JSW/@@download/ENCFF643JSW.bam mm10-minimal archived low read length, low read depth ENCFF237ZQZ bam unfiltered alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUY, ENCFF806TVZ 809646199 ENCODE Processing Pipeline a2484b3ce37e2b3e7f8b69606690937e https://www.encodeproject.org/files/ENCFF237ZQZ/@@download/ENCFF237ZQZ.bam mm10-minimal archived low read length, low read depth ENCFF224PDN bam alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUY, ENCFF806TVZ 510226967 ENCODE Processing Pipeline bfca9f9df024aa6630b200aaddfef2a2 https://www.encodeproject.org/files/ENCFF224PDN/@@download/ENCFF224PDN.bam mm10-minimal archived low read length, low read depth ENCFF366UML bam alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZVC, ENCFF806TVZ 712373330 ENCODE Processing Pipeline ac63a7823c11f8fd87611d4e7453b2f1 https://www.encodeproject.org/files/ENCFF366UML/@@download/ENCFF366UML.bam mm10-minimal archived low read length, low read depth ENCFF856WFI bam alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUY, ENCFF018NEO 510046722 ENCODE Processing Pipeline 69ffa9c4981f92deb7aedf09b260c60d https://www.encodeproject.org/files/ENCFF856WFI/@@download/ENCFF856WFI.bam mm10 released low read length, low read depth ENCFF647UJD bam unfiltered alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVC, ENCFF018NEO 1137923162 ENCODE Processing Pipeline 107a0af262fc0ba155ec32240b06712a https://www.encodeproject.org/files/ENCFF647UJD/@@download/ENCFF647UJD.bam mm10 released low read length, low read depth ENCFF718CJE bam unfiltered alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUY, ENCFF018NEO 810832408 ENCODE Processing Pipeline 669380b71419f98c99aaf8ca51835e3c https://www.encodeproject.org/files/ENCFF718CJE/@@download/ENCFF718CJE.bam mm10 released low read length, low read depth ENCFF886TCK bam alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVC, ENCFF018NEO 712127913 ENCODE Processing Pipeline b88024361d8201d0f73d474283cc192c https://www.encodeproject.org/files/ENCFF886TCK/@@download/ENCFF886TCK.bam mm10 released low read length, low read depth ENCFF568JIO fastq reads ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1601858115 Bing Ren, UCSD 8422d8a8d26f8513ec0936e186db0513 SRA:SRR3652952 https://www.encodeproject.org/files/ENCFF568JIO/@@download/ENCFF568JIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released inconsistent platforms ENCFF295TMX fastq reads ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2005879274 Bing Ren, UCSD fb5d9f7e67ab2c67ec9a489b6b5317af SRA:SRR3652951 https://www.encodeproject.org/files/ENCFF295TMX/@@download/ENCFF295TMX.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released inconsistent platforms ENCFF810ACM bam alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF295TMX, ENCFF806TVZ 1674195534 ENCODE Processing Pipeline cc3a9d466b6af5e26b00ae1f16b1d625 https://www.encodeproject.org/files/ENCFF810ACM/@@download/ENCFF810ACM.bam mm10-minimal archived inconsistent platforms ENCFF605NEI bam alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF568JIO, ENCFF806TVZ 1368499589 ENCODE Processing Pipeline 04736821dfc46b2e34aca4a0419ae920 https://www.encodeproject.org/files/ENCFF605NEI/@@download/ENCFF605NEI.bam mm10-minimal archived inconsistent platforms ENCFF202LNH bed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF810ACM, ENCFF949WTQ 678974 ENCODE Processing Pipeline 0dad94a12b5c9b7cc296fd38a1ce2309 https://www.encodeproject.org/files/ENCFF202LNH/@@download/ENCFF202LNH.bed.gz mm10-minimal archived inconsistent platforms ENCFF431UBS bed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF605NEI 699641 ENCODE Processing Pipeline 33fd31eb9d8d69aeaec697f1039fa22e https://www.encodeproject.org/files/ENCFF431UBS/@@download/ENCFF431UBS.bed.gz mm10-minimal archived inconsistent platforms ENCFF756YNQ bed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF605NEI, ENCFF810ACM, ENCFF949WTQ 902181 ENCODE Processing Pipeline fb0c01480394fcabb7a6b2970052dc88 https://www.encodeproject.org/files/ENCFF756YNQ/@@download/ENCFF756YNQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF288SSN bigBed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF431UBS 2217375 ENCODE Processing Pipeline a81b66b02b09085fafcaef0bd8ea7c26 https://www.encodeproject.org/files/ENCFF288SSN/@@download/ENCFF288SSN.bigBed mm10-minimal archived inconsistent platforms ENCFF750ISJ bigBed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF756YNQ 2727314 ENCODE Processing Pipeline ce2f62ca9674b72bdd6c2e35acdc975f https://www.encodeproject.org/files/ENCFF750ISJ/@@download/ENCFF750ISJ.bigBed mm10-minimal archived inconsistent platforms ENCFF729KDV bigBed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF202LNH 2160980 ENCODE Processing Pipeline 2375eddf4c0cf428d709720ecd1848bd https://www.encodeproject.org/files/ENCFF729KDV/@@download/ENCFF729KDV.bigBed mm10-minimal archived inconsistent platforms ENCFF054NTH bigWig signal p-value ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF605NEI 491735822 ENCODE Processing Pipeline 5c89e50445301b697c1183b47b8ec239 https://www.encodeproject.org/files/ENCFF054NTH/@@download/ENCFF054NTH.bigWig mm10-minimal archived inconsistent platforms ENCFF589NNM bigWig signal p-value ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF810ACM, ENCFF949WTQ 526222035 ENCODE Processing Pipeline 214d31ddd6962febb01a376850b71b17 https://www.encodeproject.org/files/ENCFF589NNM/@@download/ENCFF589NNM.bigWig mm10-minimal archived inconsistent platforms ENCFF846DIN bigWig signal p-value ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF605NEI, ENCFF810ACM, ENCFF949WTQ 800900049 ENCODE Processing Pipeline b480edd3126f21efe5cd029aa5d47d29 https://www.encodeproject.org/files/ENCFF846DIN/@@download/ENCFF846DIN.bigWig mm10-minimal archived inconsistent platforms ENCFF876KIF bigWig fold change over control ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF605NEI 521515075 ENCODE Processing Pipeline 207386310408da636024a4c1a5f11ea9 https://www.encodeproject.org/files/ENCFF876KIF/@@download/ENCFF876KIF.bigWig mm10-minimal archived inconsistent platforms ENCFF509TQO bigWig fold change over control ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF810ACM, ENCFF949WTQ 633590572 ENCODE Processing Pipeline 87ef1ea16845458c555e6629cc110804 https://www.encodeproject.org/files/ENCFF509TQO/@@download/ENCFF509TQO.bigWig mm10-minimal archived inconsistent platforms ENCFF075VRY bigWig fold change over control ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF605NEI, ENCFF810ACM, ENCFF949WTQ 1091050068 ENCODE Processing Pipeline 15dfc93191e8dfb25f00e53523194557 https://www.encodeproject.org/files/ENCFF075VRY/@@download/ENCFF075VRY.bigWig mm10-minimal archived inconsistent platforms ENCFF043NAE bed narrowPeak replicated peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF202LNH, ENCFF431UBS, ENCFF756YNQ 663212 ENCODE Processing Pipeline 172c1daebeffb0f6d2a91ddc99f3690b https://www.encodeproject.org/files/ENCFF043NAE/@@download/ENCFF043NAE.bed.gz mm10-minimal archived inconsistent platforms ENCFF600JDQ bigBed narrowPeak replicated peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF043NAE 1556661 ENCODE Processing Pipeline 4c82d12be97498d8723ae33d6e3cde25 https://www.encodeproject.org/files/ENCFF600JDQ/@@download/ENCFF600JDQ.bigBed mm10-minimal archived inconsistent platforms ENCFF646ZBJ bam unfiltered alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF568JIO 1943569394 ENCODE Processing Pipeline 1d08aa6b45b731d6a7b4ee690f0a0134 https://www.encodeproject.org/files/ENCFF646ZBJ/@@download/ENCFF646ZBJ.bam mm10 released inconsistent platforms ENCFF641BNS bam unfiltered alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF295TMX 2417757027 ENCODE Processing Pipeline e8d6ec5d8eeb9643e66044fab914df2e https://www.encodeproject.org/files/ENCFF641BNS/@@download/ENCFF641BNS.bam mm10 released inconsistent platforms ENCFF275UXH bam alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF295TMX 1673796810 ENCODE Processing Pipeline 0853051077bc04749eb963aa642e0ea5 https://www.encodeproject.org/files/ENCFF275UXH/@@download/ENCFF275UXH.bam mm10 released inconsistent platforms ENCFF552LAL bam alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF568JIO 1368192575 ENCODE Processing Pipeline 7ca26341f951aa1d813560e39d7d09cd https://www.encodeproject.org/files/ENCFF552LAL/@@download/ENCFF552LAL.bam mm10 released inconsistent platforms ENCFF616BOK bed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF552LAL 719639 ENCODE Processing Pipeline d1356335e895bf03b22b73aca1213d0a https://www.encodeproject.org/files/ENCFF616BOK/@@download/ENCFF616BOK.bed.gz mm10 released inconsistent platforms ENCFF451DOR bed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF275UXH, ENCFF552LAL 918970 ENCODE Processing Pipeline bcd3012d5151ee88f6cf39392447df70 https://www.encodeproject.org/files/ENCFF451DOR/@@download/ENCFF451DOR.bed.gz mm10 released inconsistent platforms ENCFF578TSC bed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF275UXH 685207 ENCODE Processing Pipeline ff7988d93e5c078f832355c0900fa8be https://www.encodeproject.org/files/ENCFF578TSC/@@download/ENCFF578TSC.bed.gz mm10 released inconsistent platforms ENCFF176OXL bigBed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF616BOK 2271162 ENCODE Processing Pipeline 2842a0fe62ea0f4658b4561161cd9e24 https://www.encodeproject.org/files/ENCFF176OXL/@@download/ENCFF176OXL.bigBed mm10 released inconsistent platforms ENCFF617IZB bigBed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF578TSC 2183009 ENCODE Processing Pipeline a1689dd9d7044c0cf16c5f730fc18d80 https://www.encodeproject.org/files/ENCFF617IZB/@@download/ENCFF617IZB.bigBed mm10 released inconsistent platforms ENCFF959HWE bigBed narrowPeak peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF451DOR 2757174 ENCODE Processing Pipeline c24386831ddaffe461ebc5e78be57003 https://www.encodeproject.org/files/ENCFF959HWE/@@download/ENCFF959HWE.bigBed mm10 released inconsistent platforms ENCFF195ATA bigWig signal p-value ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF552LAL 575914839 ENCODE Processing Pipeline a36b64ea067bf87fa6ae9aecac90bc1c https://www.encodeproject.org/files/ENCFF195ATA/@@download/ENCFF195ATA.bigWig mm10 released inconsistent platforms ENCFF624AOX bigWig signal p-value ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF275UXH 674899832 ENCODE Processing Pipeline b084c748d7e5b6fbdb83de67e65ee80d https://www.encodeproject.org/files/ENCFF624AOX/@@download/ENCFF624AOX.bigWig mm10 released inconsistent platforms ENCFF530CVL bigWig signal p-value ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF275UXH, ENCFF552LAL 1249293017 ENCODE Processing Pipeline e33904149bc0011c2772e60c0f78f355 https://www.encodeproject.org/files/ENCFF530CVL/@@download/ENCFF530CVL.bigWig mm10 released inconsistent platforms ENCFF955ZKS bigWig fold change over control ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF552LAL 620268832 ENCODE Processing Pipeline 791cf0329b786e9c74d94a00ae32ede8 https://www.encodeproject.org/files/ENCFF955ZKS/@@download/ENCFF955ZKS.bigWig mm10 released inconsistent platforms ENCFF546PYC bigWig fold change over control ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF275UXH 726440628 ENCODE Processing Pipeline 9796d3e7e6934cb445efe9edb2343402 https://www.encodeproject.org/files/ENCFF546PYC/@@download/ENCFF546PYC.bigWig mm10 released inconsistent platforms ENCFF209EYY bigWig fold change over control ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF275UXH, ENCFF552LAL 1250453883 ENCODE Processing Pipeline 96b15f7b957c9a568ca48fb63e5e81cf https://www.encodeproject.org/files/ENCFF209EYY/@@download/ENCFF209EYY.bigWig mm10 released inconsistent platforms ENCFF839FLS bed narrowPeak replicated peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF451DOR, ENCFF578TSC, ENCFF616BOK 679137 ENCODE Processing Pipeline b91f23dcf953207a1b2c23613ba0e80a https://www.encodeproject.org/files/ENCFF839FLS/@@download/ENCFF839FLS.bed.gz mm10 released inconsistent platforms ENCFF755CWS bigBed narrowPeak replicated peaks ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF839FLS 1573197 ENCODE Processing Pipeline f770b07f77559ff81e100ad8bf617421 https://www.encodeproject.org/files/ENCFF755CWS/@@download/ENCFF755CWS.bigBed mm10 released inconsistent platforms ENCFF817UHS fastq reads ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2248300157 Bing Ren, UCSD 2d477f60e51e3161315ed232f5cbd481 SRA:SRR3651919 https://www.encodeproject.org/files/ENCFF817UHS/@@download/ENCFF817UHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released mild to moderate bottlenecking, inconsistent platforms ENCFF237XAA fastq reads ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2241970524 Bing Ren, UCSD f826337022cc9be4ff18061ca329f378 SRA:SRR3651920 https://www.encodeproject.org/files/ENCFF237XAA/@@download/ENCFF237XAA.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF676KMC bam alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF237XAA, ENCFF806TVZ 1849993569 ENCODE Processing Pipeline 34d45dccd37136da12d25b935c98acdd https://www.encodeproject.org/files/ENCFF676KMC/@@download/ENCFF676KMC.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF128BVX bam alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF817UHS 1744374754 ENCODE Processing Pipeline f1661f0353230464273896579d92198e https://www.encodeproject.org/files/ENCFF128BVX/@@download/ENCFF128BVX.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF894SCE bigBed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF972KSI 3162278 ENCODE Processing Pipeline c257f1beb1cdcb61f476177671f39e25 https://www.encodeproject.org/files/ENCFF894SCE/@@download/ENCFF894SCE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF784KYS bed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF676KMC, ENCFF834ZUW 741221 ENCODE Processing Pipeline 836c8be3974c36d5f4af9bb4e11ecdc5 https://www.encodeproject.org/files/ENCFF784KYS/@@download/ENCFF784KYS.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF972KSI bed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF128BVX, ENCFF326YEF, ENCFF676KMC, ENCFF834ZUW 1034059 ENCODE Processing Pipeline 5f79b8481801da673b7fe19f08c61d5a https://www.encodeproject.org/files/ENCFF972KSI/@@download/ENCFF972KSI.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF046AXU bigBed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF784KYS 2389060 ENCODE Processing Pipeline c986a76980b88ed0e396fb14e96101dd https://www.encodeproject.org/files/ENCFF046AXU/@@download/ENCFF046AXU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF420BFB bed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF128BVX, ENCFF326YEF, ENCFF834ZUW 1035116 ENCODE Processing Pipeline 98d89710a923232b0204af2719d4c3a7 https://www.encodeproject.org/files/ENCFF420BFB/@@download/ENCFF420BFB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF226ZRC bigBed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF420BFB 3244851 ENCODE Processing Pipeline 2e2e51b8a4009a802832b08c4b4bfc79 https://www.encodeproject.org/files/ENCFF226ZRC/@@download/ENCFF226ZRC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF075VPI bigWig signal p-value ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF676KMC, ENCFF834ZUW 908361299 ENCODE Processing Pipeline b4f4a1f06fc58d298399048cd08a5180 https://www.encodeproject.org/files/ENCFF075VPI/@@download/ENCFF075VPI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF794GRU bigWig signal p-value ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF128BVX, ENCFF326YEF, ENCFF834ZUW 881677723 ENCODE Processing Pipeline 3c5169c454f974f301ec8ef0bdc74b15 https://www.encodeproject.org/files/ENCFF794GRU/@@download/ENCFF794GRU.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF059NNX bigWig signal p-value ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF128BVX, ENCFF326YEF, ENCFF676KMC, ENCFF834ZUW 1215663012 ENCODE Processing Pipeline 80d851527774d57efbbe1e258373088a https://www.encodeproject.org/files/ENCFF059NNX/@@download/ENCFF059NNX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF560HEI bigWig fold change over control ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF676KMC, ENCFF834ZUW 913308811 ENCODE Processing Pipeline c6d6e3bc3b727548dc43cec1fd53db6d https://www.encodeproject.org/files/ENCFF560HEI/@@download/ENCFF560HEI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF545ECV bigWig fold change over control ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF128BVX, ENCFF326YEF, ENCFF834ZUW 891289506 ENCODE Processing Pipeline a9d479bfd0969c952eaa26e67460db36 https://www.encodeproject.org/files/ENCFF545ECV/@@download/ENCFF545ECV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF210GOS bigWig fold change over control ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF128BVX, ENCFF326YEF, ENCFF676KMC, ENCFF834ZUW 1292913304 ENCODE Processing Pipeline e72b20faa4315c0789f48bb4f5a5d283 https://www.encodeproject.org/files/ENCFF210GOS/@@download/ENCFF210GOS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF036KIC bigBed narrowPeak replicated peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF276PHA 1750053 ENCODE Processing Pipeline f700c2eb3795797e3b47d8073910bf3b https://www.encodeproject.org/files/ENCFF036KIC/@@download/ENCFF036KIC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF276PHA bed narrowPeak replicated peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF420BFB, ENCFF784KYS, ENCFF972KSI 748584 ENCODE Processing Pipeline 155193bba3dbed2590c0c3c8c6d8c1f2 https://www.encodeproject.org/files/ENCFF276PHA/@@download/ENCFF276PHA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF798OZO bam unfiltered alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF817UHS 2655973578 ENCODE Processing Pipeline fa2fad8a95425ecdaefb2169b85d0f52 https://www.encodeproject.org/files/ENCFF798OZO/@@download/ENCFF798OZO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF635DRB bam unfiltered alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF237XAA 2696498757 ENCODE Processing Pipeline bf801bcea93164b23b5196bbb1968587 https://www.encodeproject.org/files/ENCFF635DRB/@@download/ENCFF635DRB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF492ISD bam alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF817UHS 1744051956 ENCODE Processing Pipeline 2c92066874879b72cb4f2303c447dc2b https://www.encodeproject.org/files/ENCFF492ISD/@@download/ENCFF492ISD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF032YBV bam alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF237XAA 1849572557 ENCODE Processing Pipeline 1c4d0ea5f1c2e79b9d338a54df7ab85b https://www.encodeproject.org/files/ENCFF032YBV/@@download/ENCFF032YBV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF340BQQ bed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF492ISD, ENCFF916TFR 1032529 ENCODE Processing Pipeline 56df968c52360f025b0caca8b1a6a3f2 https://www.encodeproject.org/files/ENCFF340BQQ/@@download/ENCFF340BQQ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF761VVT bed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF032YBV, ENCFF492ISD, ENCFF643WUI, ENCFF916TFR 1023375 ENCODE Processing Pipeline 6b50f16cbc17b3d3ce46df96ddf499f0 https://www.encodeproject.org/files/ENCFF761VVT/@@download/ENCFF761VVT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF916SBV bigBed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF340BQQ 2606871 ENCODE Processing Pipeline a20767aa954fb6f82b78d1830fc7e438 https://www.encodeproject.org/files/ENCFF916SBV/@@download/ENCFF916SBV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF773FOO bed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF032YBV, ENCFF643WUI 698540 ENCODE Processing Pipeline 4fd023dddc1b3a7af7b94957ed119a5e https://www.encodeproject.org/files/ENCFF773FOO/@@download/ENCFF773FOO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF887AWY bigBed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF773FOO 2279805 ENCODE Processing Pipeline f5c4d734811fd228eb08d6be0aff6e5b https://www.encodeproject.org/files/ENCFF887AWY/@@download/ENCFF887AWY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF703MNE bigBed narrowPeak peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF761VVT 3124100 ENCODE Processing Pipeline 9f80e1421bc802fca8e40c865f9582c3 https://www.encodeproject.org/files/ENCFF703MNE/@@download/ENCFF703MNE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF981QBN bigWig signal p-value ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF032YBV, ENCFF643WUI 669086965 ENCODE Processing Pipeline 6ae05d54049271a4aefa83bd3ed0feb1 https://www.encodeproject.org/files/ENCFF981QBN/@@download/ENCFF981QBN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF461TQQ bigWig signal p-value ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF492ISD, ENCFF916TFR 689314478 ENCODE Processing Pipeline 717d5db2792b9561c53e4b13397a4f74 https://www.encodeproject.org/files/ENCFF461TQQ/@@download/ENCFF461TQQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF443IYP bigWig signal p-value ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF032YBV, ENCFF492ISD, ENCFF643WUI, ENCFF916TFR 1005674186 ENCODE Processing Pipeline fbc5feee0a285355d35e8a1c0438f58b https://www.encodeproject.org/files/ENCFF443IYP/@@download/ENCFF443IYP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF455WQT bigWig fold change over control ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF032YBV, ENCFF643WUI 749039497 ENCODE Processing Pipeline 158641cf5feb90661ae91c45136f5078 https://www.encodeproject.org/files/ENCFF455WQT/@@download/ENCFF455WQT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF108YAG bigWig fold change over control ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF492ISD, ENCFF916TFR 689517694 ENCODE Processing Pipeline db28cc63ff3f5ba8979a339cbab24601 https://www.encodeproject.org/files/ENCFF108YAG/@@download/ENCFF108YAG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF323AGE bigWig fold change over control ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF032YBV, ENCFF492ISD, ENCFF643WUI, ENCFF916TFR 1358057582 ENCODE Processing Pipeline f8189f4a00f9938b4234963ee5bcf376 https://www.encodeproject.org/files/ENCFF323AGE/@@download/ENCFF323AGE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF268GCA bed narrowPeak replicated peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF340BQQ, ENCFF761VVT, ENCFF773FOO 740693 ENCODE Processing Pipeline 61eac69ddaec0e94c70bdeeeb1457e08 https://www.encodeproject.org/files/ENCFF268GCA/@@download/ENCFF268GCA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF452IRL bigBed narrowPeak replicated peaks ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF268GCA 1730517 ENCODE Processing Pipeline 097d200de99c6d8aa8a3d6dbd94bf88a https://www.encodeproject.org/files/ENCFF452IRL/@@download/ENCFF452IRL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001NEN bigBed narrowPeak peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHQ 2381252 Michael Snyder, Stanford 45e39895daafcd789a622a01e15ca007 https://www.encodeproject.org/files/ENCFF001NEN/@@download/ENCFF001NEN.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF001NEO fastq reads ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 988831705 Michael Snyder, Stanford 9d40dd4db8c3a312691a1d26a5226d29 https://www.encodeproject.org/files/ENCFF001NEO/@@download/ENCFF001NEO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF001NEQ fastq reads ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1300337811 Michael Snyder, Stanford 63c971b703b9f2b0870a2cd01fa85063 https://www.encodeproject.org/files/ENCFF001NEQ/@@download/ENCFF001NEQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF001NES bigWig signal ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NET, ENCFF001NEU 373926097 Michael Snyder, Stanford 3018877a2b9e1fa8440afd8e14c329e9 https://www.encodeproject.org/files/ENCFF001NES/@@download/ENCFF001NES.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF001NET bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NEO 521690159 Michael Snyder, Stanford c57929ee0a29efb08f47443a1899579d https://www.encodeproject.org/files/ENCFF001NET/@@download/ENCFF001NET.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF001NEU bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NEQ 596235428 Michael Snyder, Stanford 0762f2993b0e5c794499aa9ff616865d https://www.encodeproject.org/files/ENCFF001NEU/@@download/ENCFF001NEU.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF001YHQ bed narrowPeak peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NET, ENCFF001NEU 1028121 Michael Snyder, Stanford 4e1fd93b70bb35c7ca9e554fc7082e7c https://www.encodeproject.org/files/ENCFF001YHQ/@@download/ENCFF001YHQ.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF933NFU bam unfiltered alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NEO, ENCFF018NEO 1074560094 ENCODE Processing Pipeline ebf66bac902e5a07f81caba3ae493886 https://www.encodeproject.org/files/ENCFF933NFU/@@download/ENCFF933NFU.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF834CYL bam unfiltered alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NEQ, ENCFF018NEO 1379000019 ENCODE Processing Pipeline 0c3e80a5d594bb34d3a17df4c1e543c2 https://www.encodeproject.org/files/ENCFF834CYL/@@download/ENCFF834CYL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF487MBJ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NEQ, ENCFF018NEO 944782207 ENCODE Processing Pipeline 6dbe349c984318d4c8ac029d746dd73a https://www.encodeproject.org/files/ENCFF487MBJ/@@download/ENCFF487MBJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF650EPZ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NEO, ENCFF018NEO 737187547 ENCODE Processing Pipeline cacacbdafbd2c36836cb2194c2d2196e https://www.encodeproject.org/files/ENCFF650EPZ/@@download/ENCFF650EPZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF286WBV bigWig signal p-value ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF650EPZ 241722847 ENCODE Processing Pipeline 8d116857c30ad5bd8da7c3a598668563 https://www.encodeproject.org/files/ENCFF286WBV/@@download/ENCFF286WBV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF866TNK bigWig signal p-value ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF487MBJ 224782959 ENCODE Processing Pipeline 432d9ff5c018903602d6ad605a442516 https://www.encodeproject.org/files/ENCFF866TNK/@@download/ENCFF866TNK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF353KBR bigWig signal p-value ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF487MBJ, ENCFF650EPZ 211735954 ENCODE Processing Pipeline 8677ed0169cfef84ad1f37b16c1c505d https://www.encodeproject.org/files/ENCFF353KBR/@@download/ENCFF353KBR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF033VZG bigWig fold change over control ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF650EPZ 291764734 ENCODE Processing Pipeline ff4d76dc49e7f5632508aaac887350af https://www.encodeproject.org/files/ENCFF033VZG/@@download/ENCFF033VZG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF948UKQ bigWig fold change over control ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF487MBJ 353365051 ENCODE Processing Pipeline d0dbe67acbc0591edf23c3495d2967af https://www.encodeproject.org/files/ENCFF948UKQ/@@download/ENCFF948UKQ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF647KNH bed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF650EPZ 4557130 ENCODE Processing Pipeline 322cbdce88cfa45b1a4f45959934da19 https://www.encodeproject.org/files/ENCFF647KNH/@@download/ENCFF647KNH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF065TVE bed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF487MBJ, ENCFF650EPZ 6039030 ENCODE Processing Pipeline b808590b517f94b590c006f58a9d3418 https://www.encodeproject.org/files/ENCFF065TVE/@@download/ENCFF065TVE.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF351GDC bigBed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF647KNH 10605279 ENCODE Processing Pipeline 43838ef6312b23cf6bd5abf099e956f2 https://www.encodeproject.org/files/ENCFF351GDC/@@download/ENCFF351GDC.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF668KLU bigWig fold change over control ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF487MBJ, ENCFF650EPZ 552160371 ENCODE Processing Pipeline 69f3ea7aef036c79d810ad58d43d6bf6 https://www.encodeproject.org/files/ENCFF668KLU/@@download/ENCFF668KLU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF918DGZ bed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF487MBJ 2785093 ENCODE Processing Pipeline d47c850c1addc7a8a6354edd7133580c https://www.encodeproject.org/files/ENCFF918DGZ/@@download/ENCFF918DGZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF811RHL bed narrowPeak conservative idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065TVE, ENCFF547MET, ENCFF647KNH, ENCFF918DGZ 628220 ENCODE Processing Pipeline 0ebc407632b2925ffcdd38d70baaf402 https://www.encodeproject.org/files/ENCFF811RHL/@@download/ENCFF811RHL.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF176KHM bigBed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065TVE 13094033 ENCODE Processing Pipeline fd2abf07eca47f1a4b83adbe50acadb7 https://www.encodeproject.org/files/ENCFF176KHM/@@download/ENCFF176KHM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF645WRI bed narrowPeak optimal idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065TVE, ENCFF547MET, ENCFF647KNH, ENCFF918DGZ 822744 ENCODE Processing Pipeline 868982edc07ebcd6523a7f5f84f1b431 https://www.encodeproject.org/files/ENCFF645WRI/@@download/ENCFF645WRI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF741TSH bigBed narrowPeak peaks and background as input for IDR ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF918DGZ 5941771 ENCODE Processing Pipeline ec6469fd2cb9512a59335fb76bc0b003 https://www.encodeproject.org/files/ENCFF741TSH/@@download/ENCFF741TSH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF532OQP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF645WRI 1468308 ENCODE Processing Pipeline 6ebb2e3d60699d39cb65b05c58d20433 https://www.encodeproject.org/files/ENCFF532OQP/@@download/ENCFF532OQP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF491UHV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF811RHL 1188681 ENCODE Processing Pipeline 3b1ef754141a3136044808a63b8f212d https://www.encodeproject.org/files/ENCFF491UHV/@@download/ENCFF491UHV.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF001MVP bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MVS 851685925 Ross Hardison, PennState f16d4c620c344bbc6daa9c62eb94ce1c https://www.encodeproject.org/files/ENCFF001MVP/@@download/ENCFF001MVP.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MVQ bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MVY 1820359042 Ross Hardison, PennState 765b7128388284be505fbb216e91d50e https://www.encodeproject.org/files/ENCFF001MVQ/@@download/ENCFF001MVQ.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MVR bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGS 1026425 Ross Hardison, PennState b22251f4516c90356a3b53617f1a6599 https://www.encodeproject.org/files/ENCFF001MVR/@@download/ENCFF001MVR.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MVS fastq reads ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 720724742 Ross Hardison, PennState c0c827d51cbd8179ee9e54c090f1f20f https://www.encodeproject.org/files/ENCFF001MVS/@@download/ENCFF001MVS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWB/ released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MVT bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGT 763536 Ross Hardison, PennState 5a71a15d19966cf767125a78d89ea3c6 https://www.encodeproject.org/files/ENCFF001MVT/@@download/ENCFF001MVT.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MVU bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGU 1082256 Ross Hardison, PennState 921f4bf29c308415d1530954c84662d5 https://www.encodeproject.org/files/ENCFF001MVU/@@download/ENCFF001MVU.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MVV bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1804483076 Ross Hardison, PennState 779498b46e896bdfa8229a79f65cc9b4 https://www.encodeproject.org/files/ENCFF001MVV/@@download/ENCFF001MVV.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MVW bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3434317701 Ross Hardison, PennState f9aa2cd0a025aa72e41f156d40e6a6f2 https://www.encodeproject.org/files/ENCFF001MVW/@@download/ENCFF001MVW.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MVX bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 4832985898 Ross Hardison, PennState beb22db3bac3720b79433ff98bdffd25 https://www.encodeproject.org/files/ENCFF001MVX/@@download/ENCFF001MVX.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MVY fastq reads ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1454271908 Ross Hardison, PennState 12a2d5932444ee5c3196b5038db710d8 https://www.encodeproject.org/files/ENCFF001MVY/@@download/ENCFF001MVY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWM/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, low read depth ENCFF001YGS bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 556051 Ross Hardison, PennState 7dbe7b05386947016b3e5458f0328c26 https://www.encodeproject.org/files/ENCFF001YGS/@@download/ENCFF001YGS.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001YGT bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 447880 Ross Hardison, PennState dc8173ec0ccb439bfd0e41fcdf2e434b https://www.encodeproject.org/files/ENCFF001YGT/@@download/ENCFF001YGT.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001YGU bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 547684 Ross Hardison, PennState 9467e6481229a123230e235fcec693f4 https://www.encodeproject.org/files/ENCFF001YGU/@@download/ENCFF001YGU.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF214HNU bam unfiltered alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1722384348 ENCODE Processing Pipeline 2356f07d39e894da675913bf49ebed68 https://www.encodeproject.org/files/ENCFF214HNU/@@download/ENCFF214HNU.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF199HTM bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1145017532 ENCODE Processing Pipeline 77427bb70e36a17d41bde2be9c7e7680 https://www.encodeproject.org/files/ENCFF199HTM/@@download/ENCFF199HTM.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF685FCF bam unfiltered alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 913452305 ENCODE Processing Pipeline 6d53441e68051ae86f38183523ae2e8f https://www.encodeproject.org/files/ENCFF685FCF/@@download/ENCFF685FCF.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF720JCR bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 643432288 ENCODE Processing Pipeline 99532c61cb2d0e26b1766a1363e7ab24 https://www.encodeproject.org/files/ENCFF720JCR/@@download/ENCFF720JCR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF005EUZ bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 766386483 ENCODE Processing Pipeline d061ab21ca88847a6b7b78aa04ac1e07 https://www.encodeproject.org/files/ENCFF005EUZ/@@download/ENCFF005EUZ.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF058IYU bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 917647140 ENCODE Processing Pipeline 6b3ce5779391dcf7fae8d1ac4de799e7 https://www.encodeproject.org/files/ENCFF058IYU/@@download/ENCFF058IYU.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF799JEB bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 918083493 ENCODE Processing Pipeline f9a634bfdf6e69aec9e9f6d8faf13069 https://www.encodeproject.org/files/ENCFF799JEB/@@download/ENCFF799JEB.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF344IDA bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 648928905 ENCODE Processing Pipeline 340746a075203f04f8c9ecc081534773 https://www.encodeproject.org/files/ENCFF344IDA/@@download/ENCFF344IDA.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF117JXG bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 772295424 ENCODE Processing Pipeline 6ec2d915eeec37af15d4b31d85a9f74d https://www.encodeproject.org/files/ENCFF117JXG/@@download/ENCFF117JXG.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF498RZJ bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 1071382330 ENCODE Processing Pipeline 43c426fb967bffbc7ccde2739563d634 https://www.encodeproject.org/files/ENCFF498RZJ/@@download/ENCFF498RZJ.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF688HQL bed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 5954185 ENCODE Processing Pipeline 1804aa406503607a7bc61f99cba9fceb https://www.encodeproject.org/files/ENCFF688HQL/@@download/ENCFF688HQL.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF334OBK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF752ZTC 954767 ENCODE Processing Pipeline c501570fa43b5351e23051bdb7860e1f https://www.encodeproject.org/files/ENCFF334OBK/@@download/ENCFF334OBK.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF103KWB bed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 5884067 ENCODE Processing Pipeline a9a835017a1fb8a6dd3c87f7cd1846a6 https://www.encodeproject.org/files/ENCFF103KWB/@@download/ENCFF103KWB.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF752ZTC bed narrowPeak optimal idr thresholded peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF103KWB, ENCFF439LAM, ENCFF547MET, ENCFF688HQL 548057 ENCODE Processing Pipeline 8cb3df5c51199a58d6fdaa05100139f4 https://www.encodeproject.org/files/ENCFF752ZTC/@@download/ENCFF752ZTC.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF439LAM bed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 6538942 ENCODE Processing Pipeline b9e065f27d84bc5ed6e17c352ad87c16 https://www.encodeproject.org/files/ENCFF439LAM/@@download/ENCFF439LAM.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF800YGV bigBed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF103KWB 11412287 ENCODE Processing Pipeline 9db56c64cad37a8aa851fd218fe898f4 https://www.encodeproject.org/files/ENCFF800YGV/@@download/ENCFF800YGV.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF165XYH bigBed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF688HQL 13441555 ENCODE Processing Pipeline a6451905abfd63f80e181e99a6b40520 https://www.encodeproject.org/files/ENCFF165XYH/@@download/ENCFF165XYH.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF956CEA bigBed narrowPeak peaks and background as input for IDR ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF439LAM 11498240 ENCODE Processing Pipeline b59b4cae2051180800113726cd16e0ed https://www.encodeproject.org/files/ENCFF956CEA/@@download/ENCFF956CEA.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF385WWG fastq reads ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 2039956867 Bing Ren, UCSD a9e15cc311bab41a5f66aab41b84325c SRA:SRR3653144 https://www.encodeproject.org/files/ENCFF385WWG/@@download/ENCFF385WWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released inconsistent platforms ENCFF236CAK fastq reads ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 2438189563 Bing Ren, UCSD c4a1135c854035193a99f01731dca371 SRA:SRR3653143 https://www.encodeproject.org/files/ENCFF236CAK/@@download/ENCFF236CAK.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released inconsistent platforms ENCFF177XKP bam alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF385WWG, ENCFF806TVZ 1073414746 ENCODE Processing Pipeline 2402dafa5787db09cddeefe036e7ce5c https://www.encodeproject.org/files/ENCFF177XKP/@@download/ENCFF177XKP.bam mm10-minimal archived inconsistent platforms ENCFF162MCR bam alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF236CAK, ENCFF806TVZ 1332327585 ENCODE Processing Pipeline c315ecb19a31d630ac2d09efd510759f https://www.encodeproject.org/files/ENCFF162MCR/@@download/ENCFF162MCR.bam mm10-minimal archived inconsistent platforms ENCFF769BBU bed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF177XKP, ENCFF326YEF, ENCFF834ZUW 461848 ENCODE Processing Pipeline a230aa8e6dc199311d77724829305ef9 https://www.encodeproject.org/files/ENCFF769BBU/@@download/ENCFF769BBU.bed.gz mm10-minimal archived inconsistent platforms ENCFF643WCH bed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF162MCR, ENCFF326YEF, ENCFF834ZUW 717501 ENCODE Processing Pipeline 82fb5c79a481e4634de93a48a3c8aae2 https://www.encodeproject.org/files/ENCFF643WCH/@@download/ENCFF643WCH.bed.gz mm10-minimal archived inconsistent platforms ENCFF072KVX bed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF162MCR, ENCFF177XKP, ENCFF326YEF, ENCFF834ZUW 918645 ENCODE Processing Pipeline 84fe2c6f2db88fbb6b296b6685d8b85e https://www.encodeproject.org/files/ENCFF072KVX/@@download/ENCFF072KVX.bed.gz mm10-minimal archived inconsistent platforms ENCFF389SOB bigBed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF769BBU 1053664 ENCODE Processing Pipeline 80df8d913172de91ab30b3db57f04012 https://www.encodeproject.org/files/ENCFF389SOB/@@download/ENCFF389SOB.bigBed mm10-minimal archived inconsistent platforms ENCFF332RTO bigBed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF643WCH 1577242 ENCODE Processing Pipeline c646493199dec45dd198f1f50227a781 https://www.encodeproject.org/files/ENCFF332RTO/@@download/ENCFF332RTO.bigBed mm10-minimal archived inconsistent platforms ENCFF190ZZD bigWig signal p-value ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF177XKP, ENCFF326YEF, ENCFF834ZUW 741401886 ENCODE Processing Pipeline 9097c64dd19e452aea6dc65debe24758 https://www.encodeproject.org/files/ENCFF190ZZD/@@download/ENCFF190ZZD.bigWig mm10-minimal archived inconsistent platforms ENCFF805CFT bigWig signal p-value ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF162MCR, ENCFF177XKP, ENCFF326YEF, ENCFF834ZUW 988007896 ENCODE Processing Pipeline 1ced567f0669e9a6fd542e6f51534e8e https://www.encodeproject.org/files/ENCFF805CFT/@@download/ENCFF805CFT.bigWig mm10-minimal archived inconsistent platforms ENCFF578VVN bigBed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF072KVX 2306760 ENCODE Processing Pipeline 747bd631bd4146f2e0178b881af7615b https://www.encodeproject.org/files/ENCFF578VVN/@@download/ENCFF578VVN.bigBed mm10-minimal archived inconsistent platforms ENCFF643FGV bigWig fold change over control ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF177XKP, ENCFF326YEF, ENCFF834ZUW 667164937 ENCODE Processing Pipeline e81fea1e5d290a1c16593dd09bf5ae40 https://www.encodeproject.org/files/ENCFF643FGV/@@download/ENCFF643FGV.bigWig mm10-minimal archived inconsistent platforms ENCFF783JJN bigWig fold change over control ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF162MCR, ENCFF177XKP, ENCFF326YEF, ENCFF834ZUW 1057812794 ENCODE Processing Pipeline 0bea27d7f0b35860f596c2374737ba11 https://www.encodeproject.org/files/ENCFF783JJN/@@download/ENCFF783JJN.bigWig mm10-minimal archived inconsistent platforms ENCFF063OSA bigWig signal p-value ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF162MCR, ENCFF326YEF, ENCFF834ZUW 719415319 ENCODE Processing Pipeline 897a23667781c3880e3d6f33afd057c5 https://www.encodeproject.org/files/ENCFF063OSA/@@download/ENCFF063OSA.bigWig mm10-minimal archived inconsistent platforms ENCFF446MFX bigWig fold change over control ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF162MCR, ENCFF326YEF, ENCFF834ZUW 768094668 ENCODE Processing Pipeline 0f29aae08c42066bf4f1391e120572da https://www.encodeproject.org/files/ENCFF446MFX/@@download/ENCFF446MFX.bigWig mm10-minimal archived inconsistent platforms ENCFF516ASN bed narrowPeak replicated peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF072KVX, ENCFF643WCH, ENCFF769BBU 267441 ENCODE Processing Pipeline 605f6ae7d7d5210c2930aeec7a6e2001 https://www.encodeproject.org/files/ENCFF516ASN/@@download/ENCFF516ASN.bed.gz mm10-minimal archived inconsistent platforms ENCFF401UVO bigBed narrowPeak replicated peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF516ASN 645406 ENCODE Processing Pipeline 4a98cd4c7a102575a6037f5bad8e99ff https://www.encodeproject.org/files/ENCFF401UVO/@@download/ENCFF401UVO.bigBed mm10-minimal archived inconsistent platforms ENCFF171WAH bam unfiltered alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF385WWG 2485542097 ENCODE Processing Pipeline 68f6c2f2fb9cd2ddc2974e6814599fc2 https://www.encodeproject.org/files/ENCFF171WAH/@@download/ENCFF171WAH.bam mm10 released inconsistent platforms ENCFF784CVH bam unfiltered alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF236CAK 2963980955 ENCODE Processing Pipeline 814a1b654bccd57fb013b3bb447e95d0 https://www.encodeproject.org/files/ENCFF784CVH/@@download/ENCFF784CVH.bam mm10 released inconsistent platforms ENCFF986SRM bam alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF385WWG 1072765504 ENCODE Processing Pipeline 950c3d0d0d0b72ae85c18efc297bf1dd https://www.encodeproject.org/files/ENCFF986SRM/@@download/ENCFF986SRM.bam mm10 released inconsistent platforms ENCFF958RLB bam alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF236CAK 1331616569 ENCODE Processing Pipeline 5062213b0e44ca2fff11cf7b332a13e7 https://www.encodeproject.org/files/ENCFF958RLB/@@download/ENCFF958RLB.bam mm10 released inconsistent platforms ENCFF965JYW bed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF643WUI, ENCFF986SRM 780838 ENCODE Processing Pipeline 2a0d89b3718826052a807fffc3b4f0d3 https://www.encodeproject.org/files/ENCFF965JYW/@@download/ENCFF965JYW.bed.gz mm10 released inconsistent platforms ENCFF304WLD bigBed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF465AVR 1527427 ENCODE Processing Pipeline de28f5bb32c8681de9a96904532368d1 https://www.encodeproject.org/files/ENCFF304WLD/@@download/ENCFF304WLD.bigBed mm10 released inconsistent platforms ENCFF465AVR bed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF916TFR, ENCFF958RLB 693104 ENCODE Processing Pipeline 5e0af4a3fa515dfc05bb1adf3e87b3df https://www.encodeproject.org/files/ENCFF465AVR/@@download/ENCFF465AVR.bed.gz mm10 released inconsistent platforms ENCFF100HXV bed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF643WUI, ENCFF916TFR, ENCFF958RLB, ENCFF986SRM 939833 ENCODE Processing Pipeline a515e1691a8afbea99e454cd12746d3c https://www.encodeproject.org/files/ENCFF100HXV/@@download/ENCFF100HXV.bed.gz mm10 released inconsistent platforms ENCFF985DOW bigBed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF965JYW 1676518 ENCODE Processing Pipeline eca16b6f47fe0dabbb0777c6e59f9223 https://www.encodeproject.org/files/ENCFF985DOW/@@download/ENCFF985DOW.bigBed mm10 released inconsistent platforms ENCFF903HOJ bigBed narrowPeak peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF100HXV 2356032 ENCODE Processing Pipeline 1930f87eb44dc53cd94c51fcaba30911 https://www.encodeproject.org/files/ENCFF903HOJ/@@download/ENCFF903HOJ.bigBed mm10 released inconsistent platforms ENCFF648UBB bigWig signal p-value ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF643WUI, ENCFF986SRM 573689619 ENCODE Processing Pipeline a0eaa75d2b129bdae4bdcda820365e35 https://www.encodeproject.org/files/ENCFF648UBB/@@download/ENCFF648UBB.bigWig mm10 released inconsistent platforms ENCFF462BYM bigWig signal p-value ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF916TFR, ENCFF958RLB 566425358 ENCODE Processing Pipeline 20f9fd41e5fc62cc8be7fb6e023b065c https://www.encodeproject.org/files/ENCFF462BYM/@@download/ENCFF462BYM.bigWig mm10 released inconsistent platforms ENCFF925KID bigWig signal p-value ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF643WUI, ENCFF916TFR, ENCFF958RLB, ENCFF986SRM 1010367600 ENCODE Processing Pipeline bf66ecc016c6744eae070efa9940766b https://www.encodeproject.org/files/ENCFF925KID/@@download/ENCFF925KID.bigWig mm10 released inconsistent platforms ENCFF516JPD bigWig fold change over control ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF643WUI, ENCFF986SRM 522589176 ENCODE Processing Pipeline 6e683d41c55b09623d1acf26996992f0 https://www.encodeproject.org/files/ENCFF516JPD/@@download/ENCFF516JPD.bigWig mm10 released inconsistent platforms ENCFF028JOF bigWig fold change over control ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF916TFR, ENCFF958RLB 598671278 ENCODE Processing Pipeline 3ac22158f977873b5c86112a94dcd701 https://www.encodeproject.org/files/ENCFF028JOF/@@download/ENCFF028JOF.bigWig mm10 released inconsistent platforms ENCFF377LTJ bigWig fold change over control ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF643WUI, ENCFF916TFR, ENCFF958RLB, ENCFF986SRM 1094875925 ENCODE Processing Pipeline 50d88771fa7a6f7d7c9d2ea64d23f666 https://www.encodeproject.org/files/ENCFF377LTJ/@@download/ENCFF377LTJ.bigWig mm10 released inconsistent platforms ENCFF544GTM bigBed narrowPeak replicated peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF926DZK 681100 ENCODE Processing Pipeline 0e22043c521bcf3f65b4ae229cdf1937 https://www.encodeproject.org/files/ENCFF544GTM/@@download/ENCFF544GTM.bigBed mm10 released inconsistent platforms ENCFF926DZK bed narrowPeak replicated peaks ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF100HXV, ENCFF465AVR, ENCFF965JYW 281781 ENCODE Processing Pipeline 47eccc5e7d63437767a1747ceb776722 https://www.encodeproject.org/files/ENCFF926DZK/@@download/ENCFF926DZK.bed.gz mm10 released inconsistent platforms ENCFF538QDO fastq reads ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1221837046 Richard Myers, HAIB f1d4eaf0677dcf81cdfac526e10db8dc SRA:SRR5111961 https://www.encodeproject.org/files/ENCFF538QDO/@@download/ENCFF538QDO.fastq.gz Illumina HiSeq 2000 /files/ENCFF184PEP/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF712ARW fastq reads ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1068880582 Richard Myers, HAIB ba2d0bdce5ab479324301da227ab8e76 SRA:SRR5111960 https://www.encodeproject.org/files/ENCFF712ARW/@@download/ENCFF712ARW.fastq.gz Illumina HiSeq 2000 /files/ENCFF184PEP/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF251BAO bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF712ARW, ENCFF806TVZ 827138671 ENCODE Processing Pipeline aa48a9e02319815fba762d8d3d2a7d91 https://www.encodeproject.org/files/ENCFF251BAO/@@download/ENCFF251BAO.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF485SVS bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF538QDO, ENCFF806TVZ 933051317 ENCODE Processing Pipeline eb6cbc055aca8200b47cff2592eedb82 https://www.encodeproject.org/files/ENCFF485SVS/@@download/ENCFF485SVS.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF348JLT bam unfiltered alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 1082674981 ENCODE Processing Pipeline af42db1e6b64a70d1e2f357280167537 https://www.encodeproject.org/files/ENCFF348JLT/@@download/ENCFF348JLT.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF643YLR bam unfiltered alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 1229898234 ENCODE Processing Pipeline e07a2e164a8d9d7caa092399a15e73af https://www.encodeproject.org/files/ENCFF643YLR/@@download/ENCFF643YLR.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF624WZX bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 827048225 ENCODE Processing Pipeline 4984abc24d5bbb7abbc426b59c8aa4b5 https://www.encodeproject.org/files/ENCFF624WZX/@@download/ENCFF624WZX.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF049QHC bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 932950273 ENCODE Processing Pipeline 58bf61d6d3703e7ac42ee16f63afb549 https://www.encodeproject.org/files/ENCFF049QHC/@@download/ENCFF049QHC.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF966STN bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 313041507 ENCODE Processing Pipeline fca8ddf716c6342f216d198a0b0c0029 https://www.encodeproject.org/files/ENCFF966STN/@@download/ENCFF966STN.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF594EQD bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 300878538 ENCODE Processing Pipeline 2261356b222422e93a11556498a4affb https://www.encodeproject.org/files/ENCFF594EQD/@@download/ENCFF594EQD.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF323HFE bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 347013431 ENCODE Processing Pipeline 47075111948a064cf7bee6eac82ed186 https://www.encodeproject.org/files/ENCFF323HFE/@@download/ENCFF323HFE.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF504WKO bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 255742046 ENCODE Processing Pipeline c49507ebade6408a7da530ebd7b865b5 https://www.encodeproject.org/files/ENCFF504WKO/@@download/ENCFF504WKO.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF045CCN bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 289463101 ENCODE Processing Pipeline e67eb75db6ff075d1900f10c465c552a https://www.encodeproject.org/files/ENCFF045CCN/@@download/ENCFF045CCN.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF291KIP bigBed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF857UVO 10531855 ENCODE Processing Pipeline f430169be3c72eba84d1762038566050 https://www.encodeproject.org/files/ENCFF291KIP/@@download/ENCFF291KIP.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF580LNR bed narrowPeak optimal idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF547MET, ENCFF720THG, ENCFF779QUY, ENCFF857UVO 894734 ENCODE Processing Pipeline 64bff7c334186c4ebe0fabf64abaf7d2 https://www.encodeproject.org/files/ENCFF580LNR/@@download/ENCFF580LNR.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF779QUY bed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 5589204 ENCODE Processing Pipeline aaf78d15e7219a802b8716701ecf6632 https://www.encodeproject.org/files/ENCFF779QUY/@@download/ENCFF779QUY.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF495KVA bigBed narrowPeak conservative idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF354TDS 1403537 ENCODE Processing Pipeline 826dd1931ac7d611c37e81d77ceecef7 https://www.encodeproject.org/files/ENCFF495KVA/@@download/ENCFF495KVA.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF857UVO bed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 4574680 ENCODE Processing Pipeline a4451cef81223dd21996d113f3ce6452 https://www.encodeproject.org/files/ENCFF857UVO/@@download/ENCFF857UVO.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF500SSQ bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 469213712 ENCODE Processing Pipeline d9838d670905ead714ed6bf719f898bc https://www.encodeproject.org/files/ENCFF500SSQ/@@download/ENCFF500SSQ.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF720THG bed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 4970259 ENCODE Processing Pipeline 6bc30ede0e6cba95a1e81c78df7f4df7 https://www.encodeproject.org/files/ENCFF720THG/@@download/ENCFF720THG.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF627ZBY bigBed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF720THG 10834297 ENCODE Processing Pipeline 7fcc4aefdac571f9c0c235716478b3a8 https://www.encodeproject.org/files/ENCFF627ZBY/@@download/ENCFF627ZBY.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF858LGA bigBed narrowPeak peaks and background as input for IDR ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF779QUY 11181818 ENCODE Processing Pipeline 34faa343b9120b8e3bcf5d3177808868 https://www.encodeproject.org/files/ENCFF858LGA/@@download/ENCFF858LGA.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF923TYN bigBed narrowPeak optimal idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF580LNR 1436057 ENCODE Processing Pipeline 1e0d7d7a809922bdab8b26f54b103795 https://www.encodeproject.org/files/ENCFF923TYN/@@download/ENCFF923TYN.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF354TDS bed narrowPeak conservative idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF547MET, ENCFF720THG, ENCFF779QUY, ENCFF857UVO 867864 ENCODE Processing Pipeline 3e5ce794a910ead95ee9159a9d7049c9 https://www.encodeproject.org/files/ENCFF354TDS/@@download/ENCFF354TDS.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF002BGQ fastq reads ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1789913554 Bing Ren, UCSD 6683d37c5833571e8739d4c58f459247 SRA:SRR3651679 https://www.encodeproject.org/files/ENCFF002BGQ/@@download/ENCFF002BGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARC/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002BGS fastq reads ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1017605189 Bing Ren, UCSD 14decf576ec1f121ab2a316aa01e1a04 SRA:SRR3651677 https://www.encodeproject.org/files/ENCFF002BGS/@@download/ENCFF002BGS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARH/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF706JIN bam alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGQ, ENCFF806TVZ 1337760060 ENCODE Processing Pipeline 44cc51298cb227944236f57895394344 https://www.encodeproject.org/files/ENCFF706JIN/@@download/ENCFF706JIN.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF277WTS fastq reads ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 215584029 Bing Ren, UCSD 0aaaa2f44ba9f3a1e0984aba6b712269 SRA:SRR3651678 https://www.encodeproject.org/files/ENCFF277WTS/@@download/ENCFF277WTS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARH/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF471EKK bam alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGS, ENCFF277WTS, ENCFF806TVZ 1107212822 ENCODE Processing Pipeline 3a5363e4543243531216a9c4508e88ea https://www.encodeproject.org/files/ENCFF471EKK/@@download/ENCFF471EKK.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF144XLG bed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF706JIN, ENCFF989KGL 2185037 ENCODE Processing Pipeline 310691afb11233897abd3595c8d22919 https://www.encodeproject.org/files/ENCFF144XLG/@@download/ENCFF144XLG.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF081BUU bigWig fold change over control ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF706JIN, ENCFF989KGL 535781703 ENCODE Processing Pipeline 2ed5518eddf53357c80706da1473cc03 https://www.encodeproject.org/files/ENCFF081BUU/@@download/ENCFF081BUU.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF341VNM bigWig signal p-value ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF706JIN, ENCFF989KGL 447765499 ENCODE Processing Pipeline 74cbdc562adeaca97179d9091caabe4c https://www.encodeproject.org/files/ENCFF341VNM/@@download/ENCFF341VNM.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF461NRX bigWig signal p-value ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF471EKK, ENCFF706JIN, ENCFF989KGL 641030209 ENCODE Processing Pipeline 8bad297af87d492c02833036694dfcc1 https://www.encodeproject.org/files/ENCFF461NRX/@@download/ENCFF461NRX.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF083JRH bed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF471EKK, ENCFF989KGL 842348 ENCODE Processing Pipeline 3f968b91b5efc61a123fae241fc73523 https://www.encodeproject.org/files/ENCFF083JRH/@@download/ENCFF083JRH.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF177BOE bed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF471EKK, ENCFF706JIN, ENCFF989KGL 2032426 ENCODE Processing Pipeline 9337164cf9634bca9e954a737b6cb63c https://www.encodeproject.org/files/ENCFF177BOE/@@download/ENCFF177BOE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF816CZM bigBed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF144XLG 3754170 ENCODE Processing Pipeline 4636127c5c5f422ab9bbf3ef9398a431 https://www.encodeproject.org/files/ENCFF816CZM/@@download/ENCFF816CZM.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF807OPI bigBed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF083JRH 1862027 ENCODE Processing Pipeline ba37f5ca9c51b3b3ebe43ef1f2178430 https://www.encodeproject.org/files/ENCFF807OPI/@@download/ENCFF807OPI.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF749LUL bigBed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF177BOE 4594363 ENCODE Processing Pipeline c2bc4708b8d897a27dda0bab8b466b9f https://www.encodeproject.org/files/ENCFF749LUL/@@download/ENCFF749LUL.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF830XHV bigWig signal p-value ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF471EKK, ENCFF989KGL 493200604 ENCODE Processing Pipeline 9c6db202681d7d2575733f1dea65bc6a https://www.encodeproject.org/files/ENCFF830XHV/@@download/ENCFF830XHV.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF683XLD bigWig fold change over control ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF471EKK, ENCFF989KGL 514558351 ENCODE Processing Pipeline fdfd68df11bb7f971c8f3d009f9b7eb7 https://www.encodeproject.org/files/ENCFF683XLD/@@download/ENCFF683XLD.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF491IIQ bigWig fold change over control ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF471EKK, ENCFF706JIN, ENCFF989KGL 857329658 ENCODE Processing Pipeline 95992d4dac8b5d6c8338c2da3908e8b9 https://www.encodeproject.org/files/ENCFF491IIQ/@@download/ENCFF491IIQ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF172AEC bed narrowPeak replicated peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF083JRH, ENCFF144XLG, ENCFF177BOE 1043711 ENCODE Processing Pipeline 1534d94ef8677fd56f89b38e1b47dc74 https://www.encodeproject.org/files/ENCFF172AEC/@@download/ENCFF172AEC.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF880FIF bigBed narrowPeak replicated peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF172AEC 2213154 ENCODE Processing Pipeline bf758f628ecaba8480ec6a591131d9ea https://www.encodeproject.org/files/ENCFF880FIF/@@download/ENCFF880FIF.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF902RUP bam unfiltered alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGS, ENCFF018NEO, ENCFF277WTS 1573691815 ENCODE Processing Pipeline 98bab641897b8d8d223816bc147558dc https://www.encodeproject.org/files/ENCFF902RUP/@@download/ENCFF902RUP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF193JGG bam unfiltered alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGQ, ENCFF018NEO 1530261171 ENCODE Processing Pipeline dbed3b5bbd334676488b0e50d400c005 https://www.encodeproject.org/files/ENCFF193JGG/@@download/ENCFF193JGG.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF818YUU bam alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGS, ENCFF018NEO, ENCFF277WTS 1047073454 ENCODE Processing Pipeline 239fb689a18f913ea291a9f5a206c042 https://www.encodeproject.org/files/ENCFF818YUU/@@download/ENCFF818YUU.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF385YIJ bam alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGQ, ENCFF018NEO 1012135863 ENCODE Processing Pipeline 23bbbac881d2efdd794aeeff792f4e5b https://www.encodeproject.org/files/ENCFF385YIJ/@@download/ENCFF385YIJ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF176JQW bed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF385YIJ, ENCFF782YCY, ENCFF922FWV 2123336 ENCODE Processing Pipeline fe6c25d6732d581e3f42d2241d16296d https://www.encodeproject.org/files/ENCFF176JQW/@@download/ENCFF176JQW.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF541XGN bed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF782YCY, ENCFF818YUU, ENCFF922FWV 912348 ENCODE Processing Pipeline a9db155018176206564bd4caf717386b https://www.encodeproject.org/files/ENCFF541XGN/@@download/ENCFF541XGN.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF933EEG bigBed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF176JQW 3691831 ENCODE Processing Pipeline 3d205c574fa7b489fc3e0bf7f17368db https://www.encodeproject.org/files/ENCFF933EEG/@@download/ENCFF933EEG.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF092ILT bed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF385YIJ, ENCFF782YCY, ENCFF818YUU, ENCFF922FWV 2157525 ENCODE Processing Pipeline 4e8cfee600ba1ced67c931c8d1439536 https://www.encodeproject.org/files/ENCFF092ILT/@@download/ENCFF092ILT.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF635RTZ bigBed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF092ILT 4916948 ENCODE Processing Pipeline 6f04ec8b67f655c97581ad7198b945ce https://www.encodeproject.org/files/ENCFF635RTZ/@@download/ENCFF635RTZ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF968UMZ bigBed narrowPeak peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF541XGN 1967672 ENCODE Processing Pipeline 49385ba4bdee719b792ab6efdc7f845e https://www.encodeproject.org/files/ENCFF968UMZ/@@download/ENCFF968UMZ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF938JLZ bigWig signal p-value ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF385YIJ, ENCFF782YCY, ENCFF922FWV 554195722 ENCODE Processing Pipeline 95210857a3290d03b907429457302e32 https://www.encodeproject.org/files/ENCFF938JLZ/@@download/ENCFF938JLZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF087QCT bigWig signal p-value ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF782YCY, ENCFF818YUU, ENCFF922FWV 455501126 ENCODE Processing Pipeline d928836875b3ec31454fb3030d9bf2d6 https://www.encodeproject.org/files/ENCFF087QCT/@@download/ENCFF087QCT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF011LFN bigWig signal p-value ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF385YIJ, ENCFF782YCY, ENCFF818YUU, ENCFF922FWV 746968246 ENCODE Processing Pipeline 737a366f26973a2329eedd911f361ab5 https://www.encodeproject.org/files/ENCFF011LFN/@@download/ENCFF011LFN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF418FCJ bigWig fold change over control ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF385YIJ, ENCFF782YCY, ENCFF922FWV 550484913 ENCODE Processing Pipeline 12b8092a3759dec9ddbe661a9e379ddd https://www.encodeproject.org/files/ENCFF418FCJ/@@download/ENCFF418FCJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF149MUP bigWig fold change over control ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF782YCY, ENCFF818YUU, ENCFF922FWV 539832330 ENCODE Processing Pipeline eb3d0e72e4c80ceecca0a9fdf38efe44 https://www.encodeproject.org/files/ENCFF149MUP/@@download/ENCFF149MUP.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF165DVJ bigWig fold change over control ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF385YIJ, ENCFF782YCY, ENCFF818YUU, ENCFF922FWV 824656188 ENCODE Processing Pipeline 4a6ff29cc4a280f2a4846ec470d845d4 https://www.encodeproject.org/files/ENCFF165DVJ/@@download/ENCFF165DVJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF134RMU bed narrowPeak replicated peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF092ILT, ENCFF176JQW, ENCFF541XGN 978904 ENCODE Processing Pipeline 9d2dc784b576afdb0895a303ab29a81f https://www.encodeproject.org/files/ENCFF134RMU/@@download/ENCFF134RMU.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF760OEW bigBed narrowPeak replicated peaks ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF134RMU 1622411 ENCODE Processing Pipeline 8b5ae2336e9febe8876715003d1c3fc5 https://www.encodeproject.org/files/ENCFF760OEW/@@download/ENCFF760OEW.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF754ZVE fastq reads ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 1598992143 Bing Ren, UCSD 616da4ac0c7baebf6bcd936d8eedb1d3 SRA:SRR3653361 https://www.encodeproject.org/files/ENCFF754ZVE/@@download/ENCFF754ZVE.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released moderate library complexity, mild to moderate bottlenecking ENCFF881YFX fastq reads ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 1573359298 Bing Ren, UCSD 9d5a254afecb370f7e2502f489a43de5 SRA:SRR3653362 https://www.encodeproject.org/files/ENCFF881YFX/@@download/ENCFF881YFX.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released moderate library complexity, mild to moderate bottlenecking ENCFF928AGA bam alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF754ZVE, ENCFF806TVZ 1253255017 ENCODE Processing Pipeline d7a7d67e4d9da1dce660b594f2ebf684 https://www.encodeproject.org/files/ENCFF928AGA/@@download/ENCFF928AGA.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF466QVF bam alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF806TVZ, ENCFF881YFX 1240824679 ENCODE Processing Pipeline 93091a8662f1e220778979b56d483bc4 https://www.encodeproject.org/files/ENCFF466QVF/@@download/ENCFF466QVF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF683AZM bed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF928AGA 1407021 ENCODE Processing Pipeline 47e1f3249f92117f587c53d710269048 https://www.encodeproject.org/files/ENCFF683AZM/@@download/ENCFF683AZM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF098TPW bed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF466QVF, ENCFF720CTQ 1545931 ENCODE Processing Pipeline 9fca73dac2ca1b1627f599bf5dab7fd9 https://www.encodeproject.org/files/ENCFF098TPW/@@download/ENCFF098TPW.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF727OWN bigBed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF683AZM 4291370 ENCODE Processing Pipeline 480eb85cdfa735ff898756ee1b505679 https://www.encodeproject.org/files/ENCFF727OWN/@@download/ENCFF727OWN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF591MBU bigBed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF098TPW 4631341 ENCODE Processing Pipeline 2ac246233ee9ecb217b32ecc6b7e11c6 https://www.encodeproject.org/files/ENCFF591MBU/@@download/ENCFF591MBU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF354RMM bigWig fold change over control ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF466QVF, ENCFF720CTQ 698930473 ENCODE Processing Pipeline bea883cfb597b130352e7325444d2c97 https://www.encodeproject.org/files/ENCFF354RMM/@@download/ENCFF354RMM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF051BRX bed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF466QVF, ENCFF720CTQ, ENCFF928AGA 1903930 ENCODE Processing Pipeline 1d95d73f50704d976131c31da3621cb2 https://www.encodeproject.org/files/ENCFF051BRX/@@download/ENCFF051BRX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF498QOG bigWig signal p-value ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF466QVF, ENCFF720CTQ 725615056 ENCODE Processing Pipeline b674031cdf365cf3b7fd99a774e4416e https://www.encodeproject.org/files/ENCFF498QOG/@@download/ENCFF498QOG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF827FFE bigBed narrowPeak replicated peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF071VVN 2646827 ENCODE Processing Pipeline 0cfdb33298a3c74073c68a47ca7c3680 https://www.encodeproject.org/files/ENCFF827FFE/@@download/ENCFF827FFE.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF785AHL bigBed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF051BRX 5413539 ENCODE Processing Pipeline 5050f15ba06ffcce6b80b75499d39351 https://www.encodeproject.org/files/ENCFF785AHL/@@download/ENCFF785AHL.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF997HIX bigWig signal p-value ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF928AGA 670894880 ENCODE Processing Pipeline 9e206cedf199b7e3731adc7a19b61599 https://www.encodeproject.org/files/ENCFF997HIX/@@download/ENCFF997HIX.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF101BJH bigWig signal p-value ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF466QVF, ENCFF720CTQ, ENCFF928AGA 1356572395 ENCODE Processing Pipeline 969b0f0f61e0ec6de299aceec896f585 https://www.encodeproject.org/files/ENCFF101BJH/@@download/ENCFF101BJH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF975JIH bigWig fold change over control ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF928AGA 638640316 ENCODE Processing Pipeline 1918896f8162ed2e36c90753e4093456 https://www.encodeproject.org/files/ENCFF975JIH/@@download/ENCFF975JIH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF436ZUF bigWig fold change over control ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF466QVF, ENCFF720CTQ, ENCFF928AGA 1290411511 ENCODE Processing Pipeline 64f89f965b24ebecd45429d1a19669b6 https://www.encodeproject.org/files/ENCFF436ZUF/@@download/ENCFF436ZUF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF071VVN bed narrowPeak replicated peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF051BRX, ENCFF098TPW, ENCFF683AZM 1240044 ENCODE Processing Pipeline 5f041bda4a399554e4665a0c9bd7195e https://www.encodeproject.org/files/ENCFF071VVN/@@download/ENCFF071VVN.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF779KGA bam unfiltered alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF754ZVE 2037183846 ENCODE Processing Pipeline 38a225ffa43c1e37a0c0623776a6ca5d https://www.encodeproject.org/files/ENCFF779KGA/@@download/ENCFF779KGA.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF933NMB bam alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF754ZVE 1252978770 ENCODE Processing Pipeline c12668b74e034fd3523fdc49aad1a9ac https://www.encodeproject.org/files/ENCFF933NMB/@@download/ENCFF933NMB.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF311RHJ bam unfiltered alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF881YFX 1983771572 ENCODE Processing Pipeline 63445f9edd2c8fab5ca76f5e58f06d40 https://www.encodeproject.org/files/ENCFF311RHJ/@@download/ENCFF311RHJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF842AYU bam alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF881YFX 1240527352 ENCODE Processing Pipeline 53482b3bd85997d662370c6388585664 https://www.encodeproject.org/files/ENCFF842AYU/@@download/ENCFF842AYU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF475UTH bed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF741HOY, ENCFF933NMB 1407444 ENCODE Processing Pipeline 4de80abbd6b0f717d858e7244ad19097 https://www.encodeproject.org/files/ENCFF475UTH/@@download/ENCFF475UTH.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF948LBS bed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF842AYU 1544623 ENCODE Processing Pipeline 932fb863e8559c0dddc4cb2d0fa0cd62 https://www.encodeproject.org/files/ENCFF948LBS/@@download/ENCFF948LBS.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF691GHE bed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF741HOY, ENCFF842AYU, ENCFF933NMB 1904120 ENCODE Processing Pipeline f5eb3d5c16cab49af4dce80ff11a7274 https://www.encodeproject.org/files/ENCFF691GHE/@@download/ENCFF691GHE.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF326XEW bigBed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF475UTH 4293492 ENCODE Processing Pipeline 7a26b314246a0fe9dd3e4a9abe437d0e https://www.encodeproject.org/files/ENCFF326XEW/@@download/ENCFF326XEW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF024MPI bigBed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF948LBS 4626016 ENCODE Processing Pipeline 7f88675911da2ef48d66ad2cb530588b https://www.encodeproject.org/files/ENCFF024MPI/@@download/ENCFF024MPI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF971OVS bigBed narrowPeak peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF691GHE 5415023 ENCODE Processing Pipeline 4957f1107f52b548b668b39a9d0bba8c https://www.encodeproject.org/files/ENCFF971OVS/@@download/ENCFF971OVS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF431EVY bigWig signal p-value ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF741HOY, ENCFF933NMB 685256512 ENCODE Processing Pipeline 3174ff7602378006198ab58f62782d41 https://www.encodeproject.org/files/ENCFF431EVY/@@download/ENCFF431EVY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF058ZGR bigWig signal p-value ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF842AYU 690078241 ENCODE Processing Pipeline cc617b0eb671e534d8d9246fff40f2da https://www.encodeproject.org/files/ENCFF058ZGR/@@download/ENCFF058ZGR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF089CKY bigWig signal p-value ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF741HOY, ENCFF842AYU, ENCFF933NMB 1078648868 ENCODE Processing Pipeline b507c3e1088f657202fdc6c75a476edb https://www.encodeproject.org/files/ENCFF089CKY/@@download/ENCFF089CKY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF424MAV bigWig fold change over control ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF741HOY, ENCFF933NMB 638445317 ENCODE Processing Pipeline b5b4e0af8a3bcf28c53cb68ce869e0d4 https://www.encodeproject.org/files/ENCFF424MAV/@@download/ENCFF424MAV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF513HYW bigWig fold change over control ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF842AYU 700850045 ENCODE Processing Pipeline db6986252179bf01981713335428caab https://www.encodeproject.org/files/ENCFF513HYW/@@download/ENCFF513HYW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF566GYY bigWig fold change over control ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF741HOY, ENCFF842AYU, ENCFF933NMB 1303925412 ENCODE Processing Pipeline 028ec198d08af5713f4fd50548e94300 https://www.encodeproject.org/files/ENCFF566GYY/@@download/ENCFF566GYY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF174FSI bed narrowPeak replicated peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF475UTH, ENCFF691GHE, ENCFF948LBS 1233197 ENCODE Processing Pipeline 04a51e8a32fd4967ad1bd8fbefbb1c8a https://www.encodeproject.org/files/ENCFF174FSI/@@download/ENCFF174FSI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF774XTR bigBed narrowPeak replicated peaks ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF174FSI 2632786 ENCODE Processing Pipeline 1a1cde1c55251a3c89e1caa7d5033d01 https://www.encodeproject.org/files/ENCFF774XTR/@@download/ENCFF774XTR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF471CTL fastq reads ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3014224444 Bing Ren, UCSD 6b2996962a79d36a209a607bcb5e99ef SRA:SRR3653264 https://www.encodeproject.org/files/ENCFF471CTL/@@download/ENCFF471CTL.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF444TRZ fastq reads ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1189055685 Bing Ren, UCSD 7d19e1286beacb1ba467812f8fc15f55 SRA:SRR3653265 https://www.encodeproject.org/files/ENCFF444TRZ/@@download/ENCFF444TRZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF764CLM fastq reads ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2708610251 Bing Ren, UCSD b5de8b0a8eda109bcd65356056aeb66d SRA:SRR3653266 https://www.encodeproject.org/files/ENCFF764CLM/@@download/ENCFF764CLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF341KOU fastq reads ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1021286212 Bing Ren, UCSD a7a4bb89b9afbe7e41325488d797791b SRA:SRR3653267 https://www.encodeproject.org/files/ENCFF341KOU/@@download/ENCFF341KOU.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF418ZWT bam alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF444TRZ, ENCFF471CTL, ENCFF806TVZ 3582612715 ENCODE Processing Pipeline 5a94d751e854696ff982489520db171c https://www.encodeproject.org/files/ENCFF418ZWT/@@download/ENCFF418ZWT.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF127XUS bam alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF341KOU, ENCFF764CLM, ENCFF806TVZ 3216877384 ENCODE Processing Pipeline f25ea8705a2a42582890376a82ff9374 https://www.encodeproject.org/files/ENCFF127XUS/@@download/ENCFF127XUS.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF239FMM bed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF309QAZ, ENCFF418ZWT 1366353 ENCODE Processing Pipeline 2f7a20ae5b33fe9022c1b6f0c9f1da43 https://www.encodeproject.org/files/ENCFF239FMM/@@download/ENCFF239FMM.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF643VCF bed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF127XUS, ENCFF309QAZ, ENCFF418ZWT 1122128 ENCODE Processing Pipeline d0a11e79da0dfb1f5ad38af2d51ea7d6 https://www.encodeproject.org/files/ENCFF643VCF/@@download/ENCFF643VCF.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF028ZCJ bed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF127XUS, ENCFF309QAZ 1627400 ENCODE Processing Pipeline 3fa8bdee7523d6e58d20cf93f7469ee9 https://www.encodeproject.org/files/ENCFF028ZCJ/@@download/ENCFF028ZCJ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF569QUQ bigBed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF028ZCJ 3433203 ENCODE Processing Pipeline ae87df70c1b6cb8c58c349a0393e03e5 https://www.encodeproject.org/files/ENCFF569QUQ/@@download/ENCFF569QUQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF971DTQ bigBed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF239FMM 2869786 ENCODE Processing Pipeline 0c9de998949ea3478de5e6eb369a5c5e https://www.encodeproject.org/files/ENCFF971DTQ/@@download/ENCFF971DTQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF342WJQ bigBed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF643VCF 2263571 ENCODE Processing Pipeline 2fcedfa6359b194e98f20819f044eff8 https://www.encodeproject.org/files/ENCFF342WJQ/@@download/ENCFF342WJQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF980BMN bigWig signal p-value ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF127XUS, ENCFF309QAZ 1102171402 ENCODE Processing Pipeline dc3f0cfdd39493ace57f9a0cbf72b244 https://www.encodeproject.org/files/ENCFF980BMN/@@download/ENCFF980BMN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF648HMJ bigWig signal p-value ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF309QAZ, ENCFF418ZWT 1065635425 ENCODE Processing Pipeline da32333bf046841262be5c135004d0f7 https://www.encodeproject.org/files/ENCFF648HMJ/@@download/ENCFF648HMJ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF154CZH bigWig signal p-value ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF127XUS, ENCFF309QAZ, ENCFF418ZWT 1369225596 ENCODE Processing Pipeline 124326c08a9737c8f04fcb47599429ea https://www.encodeproject.org/files/ENCFF154CZH/@@download/ENCFF154CZH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF773ZLP bigWig fold change over control ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF127XUS, ENCFF309QAZ 1075387147 ENCODE Processing Pipeline 9d17d4d2b6056dc7be98ceee6cadc293 https://www.encodeproject.org/files/ENCFF773ZLP/@@download/ENCFF773ZLP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF999RXL bigWig fold change over control ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF309QAZ, ENCFF418ZWT 1170524909 ENCODE Processing Pipeline da8da77940507148538406281c51bf84 https://www.encodeproject.org/files/ENCFF999RXL/@@download/ENCFF999RXL.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF235BKU bigWig fold change over control ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF127XUS, ENCFF309QAZ, ENCFF418ZWT 1674245729 ENCODE Processing Pipeline e1afc45ec958673491ec0d27e8083a14 https://www.encodeproject.org/files/ENCFF235BKU/@@download/ENCFF235BKU.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF124LTB bed narrowPeak replicated peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF028ZCJ, ENCFF239FMM, ENCFF643VCF 818409 ENCODE Processing Pipeline 81a026de78e83f1f8775d7a5f1bd406b https://www.encodeproject.org/files/ENCFF124LTB/@@download/ENCFF124LTB.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF415JWX bigBed narrowPeak replicated peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF124LTB 1454328 ENCODE Processing Pipeline 7bc3915b990f8e7d2b4ae9f91b72a65e https://www.encodeproject.org/files/ENCFF415JWX/@@download/ENCFF415JWX.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF796LIE bam unfiltered alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF341KOU, ENCFF764CLM 4464000798 ENCODE Processing Pipeline 021f9bbf2e7500de68e3364545625107 https://www.encodeproject.org/files/ENCFF796LIE/@@download/ENCFF796LIE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF882PMZ bam unfiltered alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF444TRZ, ENCFF471CTL 5007982317 ENCODE Processing Pipeline 4ea2b439cf22d9242c3ca7847ce3ea6c https://www.encodeproject.org/files/ENCFF882PMZ/@@download/ENCFF882PMZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF792NIX bam alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF341KOU, ENCFF764CLM 3216293146 ENCODE Processing Pipeline 083da0a360a93e26af67f3c254ef85b8 https://www.encodeproject.org/files/ENCFF792NIX/@@download/ENCFF792NIX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF378FUS bam alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF444TRZ, ENCFF471CTL 3581979141 ENCODE Processing Pipeline 30ee893c03da56bfedc7dda2886c7822 https://www.encodeproject.org/files/ENCFF378FUS/@@download/ENCFF378FUS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF726DVN bed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF792NIX, ENCFF805AXD 1371267 ENCODE Processing Pipeline dd71db29bd8d341f199964dd977d4fc6 https://www.encodeproject.org/files/ENCFF726DVN/@@download/ENCFF726DVN.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF118INR bed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF378FUS, ENCFF792NIX, ENCFF805AXD 1160312 ENCODE Processing Pipeline af19d3e772336485630431af7595d0f6 https://www.encodeproject.org/files/ENCFF118INR/@@download/ENCFF118INR.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF711GKH bigBed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF726DVN 2915151 ENCODE Processing Pipeline 96bf23ce5227569261f0635b5591dcb0 https://www.encodeproject.org/files/ENCFF711GKH/@@download/ENCFF711GKH.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF926AGO bigBed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF653SCJ 1636475 ENCODE Processing Pipeline 38191378d359571054a8064e03b29506 https://www.encodeproject.org/files/ENCFF926AGO/@@download/ENCFF926AGO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF653SCJ bed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF378FUS 770899 ENCODE Processing Pipeline 709002a7937d6b116e0427dbc6645c77 https://www.encodeproject.org/files/ENCFF653SCJ/@@download/ENCFF653SCJ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF066GWF bigBed narrowPeak peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF118INR 2353675 ENCODE Processing Pipeline 38dfef5e2c500dde5af3fc7c207fa985 https://www.encodeproject.org/files/ENCFF066GWF/@@download/ENCFF066GWF.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF376HVL bigWig signal p-value ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF792NIX, ENCFF805AXD 892848100 ENCODE Processing Pipeline 2d62538e97527bbe6bfd5b3ce7da7549 https://www.encodeproject.org/files/ENCFF376HVL/@@download/ENCFF376HVL.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF735EEP bigWig signal p-value ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF378FUS 840628601 ENCODE Processing Pipeline 438280b785fd08d697d04a46c3bc98c4 https://www.encodeproject.org/files/ENCFF735EEP/@@download/ENCFF735EEP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF266XLU bigWig signal p-value ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF378FUS, ENCFF792NIX, ENCFF805AXD 1501514671 ENCODE Processing Pipeline d5d1e835d21453ce8c605a1319c9964b https://www.encodeproject.org/files/ENCFF266XLU/@@download/ENCFF266XLU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF456EAW bigWig fold change over control ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF792NIX, ENCFF805AXD 1133668918 ENCODE Processing Pipeline fb424f4be62b1a48e0ff340dc4c27c5d https://www.encodeproject.org/files/ENCFF456EAW/@@download/ENCFF456EAW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF820NDC bigWig fold change over control ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF378FUS 1015971043 ENCODE Processing Pipeline 7aa1ba0416baf954fb5ead959ee8efaa https://www.encodeproject.org/files/ENCFF820NDC/@@download/ENCFF820NDC.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF386EYG bigWig fold change over control ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF378FUS, ENCFF792NIX, ENCFF805AXD 1724073049 ENCODE Processing Pipeline beb8cc3773ec3c2ec154cdc6971e7026 https://www.encodeproject.org/files/ENCFF386EYG/@@download/ENCFF386EYG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF432THP bed narrowPeak replicated peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF118INR, ENCFF653SCJ, ENCFF726DVN 676021 ENCODE Processing Pipeline 5d74e45d3121e7493e07792a352ad532 https://www.encodeproject.org/files/ENCFF432THP/@@download/ENCFF432THP.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF130NRN bigBed narrowPeak replicated peaks ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF432THP 1532019 ENCODE Processing Pipeline b56187df043f3b01d4a22a9ffc55ee8e https://www.encodeproject.org/files/ENCFF130NRN/@@download/ENCFF130NRN.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF225MZS fastq reads ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 1628136319 Bing Ren, UCSD febcd4f00b01e7dc24a078358ee6c3fc SRA:SRR3652869 https://www.encodeproject.org/files/ENCFF225MZS/@@download/ENCFF225MZS.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking ENCFF844GKL fastq reads ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 1753184269 Bing Ren, UCSD 1e0b7ac4506d818e9d3d90f597f02ca7 SRA:SRR3652868 https://www.encodeproject.org/files/ENCFF844GKL/@@download/ENCFF844GKL.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released mild to moderate bottlenecking ENCFF795EBN bam alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF806TVZ, ENCFF844GKL 1399267860 ENCODE Processing Pipeline d03a3d754cc78badbebab8bd6fffdc6b https://www.encodeproject.org/files/ENCFF795EBN/@@download/ENCFF795EBN.bam mm10-minimal archived mild to moderate bottlenecking ENCFF109HID bam alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF225MZS, ENCFF806TVZ 1357038676 ENCODE Processing Pipeline dce555ad6ea8d94e774a344534872cae https://www.encodeproject.org/files/ENCFF109HID/@@download/ENCFF109HID.bam mm10-minimal archived mild to moderate bottlenecking ENCFF784GZI bed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF109HID, ENCFF294RLZ, ENCFF720CTQ, ENCFF795EBN 786652 ENCODE Processing Pipeline 47bfe87c052428cb9a194e110dd40d82 https://www.encodeproject.org/files/ENCFF784GZI/@@download/ENCFF784GZI.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF875EFX bigBed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF784GZI 2218530 ENCODE Processing Pipeline 290f7f974bdbfbc20ac8ba0020b1aefe https://www.encodeproject.org/files/ENCFF875EFX/@@download/ENCFF875EFX.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF387DGK bed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF795EBN 682222 ENCODE Processing Pipeline 80486f8beba83c14743ea4235128e84e https://www.encodeproject.org/files/ENCFF387DGK/@@download/ENCFF387DGK.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF915IAU bigBed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF233YGJ 2073084 ENCODE Processing Pipeline 8816b015f0183f5b746cbe1736356f73 https://www.encodeproject.org/files/ENCFF915IAU/@@download/ENCFF915IAU.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF281QBT bigWig fold change over control ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF109HID, ENCFF294RLZ 597485137 ENCODE Processing Pipeline c37cf81a6b3047ddf32d8c552a90af2e https://www.encodeproject.org/files/ENCFF281QBT/@@download/ENCFF281QBT.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF233YGJ bed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF109HID, ENCFF294RLZ 676798 ENCODE Processing Pipeline 1eb67798a79849b14ad3a7553a3045f0 https://www.encodeproject.org/files/ENCFF233YGJ/@@download/ENCFF233YGJ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF585CNN bigWig signal p-value ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF109HID, ENCFF294RLZ 614279988 ENCODE Processing Pipeline 30698acb33331c3958122d978541cef5 https://www.encodeproject.org/files/ENCFF585CNN/@@download/ENCFF585CNN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF259QBN bigWig signal p-value ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF795EBN 647920501 ENCODE Processing Pipeline 59374e5c820bda04b3299d404bffcc2e https://www.encodeproject.org/files/ENCFF259QBN/@@download/ENCFF259QBN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF132HJF bigBed narrowPeak replicated peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF175PFZ 1846383 ENCODE Processing Pipeline bdec4bf73806c14141f38ecd00c0e30e https://www.encodeproject.org/files/ENCFF132HJF/@@download/ENCFF132HJF.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF368VOB bigBed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF387DGK 2080793 ENCODE Processing Pipeline e0ed29da71841acf655ce34972791786 https://www.encodeproject.org/files/ENCFF368VOB/@@download/ENCFF368VOB.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF412WNR bigWig fold change over control ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF795EBN 637111859 ENCODE Processing Pipeline 3e8648284900e82dd6cb8239c86c3fdd https://www.encodeproject.org/files/ENCFF412WNR/@@download/ENCFF412WNR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF175PFZ bed narrowPeak replicated peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF233YGJ, ENCFF387DGK, ENCFF784GZI 826653 ENCODE Processing Pipeline 402da09fbcdb1bbbf688dc662d156599 https://www.encodeproject.org/files/ENCFF175PFZ/@@download/ENCFF175PFZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF736WUF bigWig signal p-value ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF109HID, ENCFF294RLZ, ENCFF720CTQ, ENCFF795EBN 1170654349 ENCODE Processing Pipeline f2ec9c6c7efa04c4655b07270de15a81 https://www.encodeproject.org/files/ENCFF736WUF/@@download/ENCFF736WUF.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF454KMI bigWig fold change over control ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF109HID, ENCFF294RLZ, ENCFF720CTQ, ENCFF795EBN 1249481512 ENCODE Processing Pipeline de9aba933e06c0aafc1f4bff47c9d2ae https://www.encodeproject.org/files/ENCFF454KMI/@@download/ENCFF454KMI.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF203GWC bam alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF225MZS 1356774221 ENCODE Processing Pipeline f16ebbcc6a1ba0b1bbfc9b71ddbac493 https://www.encodeproject.org/files/ENCFF203GWC/@@download/ENCFF203GWC.bam mm10 released mild to moderate bottlenecking ENCFF128CQQ bam unfiltered alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF225MZS 1994336196 ENCODE Processing Pipeline d9f0646b9db84fb9f29bfb8bd46928af https://www.encodeproject.org/files/ENCFF128CQQ/@@download/ENCFF128CQQ.bam mm10 released mild to moderate bottlenecking ENCFF061DMN bam unfiltered alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF844GKL 2114088631 ENCODE Processing Pipeline a902e4ac4dcf11b46f365ccf9708cbd5 https://www.encodeproject.org/files/ENCFF061DMN/@@download/ENCFF061DMN.bam mm10 released mild to moderate bottlenecking ENCFF925KNX bam alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF844GKL 1399020358 ENCODE Processing Pipeline 7d61933e2b5ee8a2fba9d1458cb9cdee https://www.encodeproject.org/files/ENCFF925KNX/@@download/ENCFF925KNX.bam mm10 released mild to moderate bottlenecking ENCFF871SMF bed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF203GWC, ENCFF741HOY 675694 ENCODE Processing Pipeline 2315862621d35d543ec4d7b3d5217c29 https://www.encodeproject.org/files/ENCFF871SMF/@@download/ENCFF871SMF.bed.gz mm10 released mild to moderate bottlenecking ENCFF608PZN bed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF925KNX 690406 ENCODE Processing Pipeline 64d86be80567dd6a264c575574ee2f69 https://www.encodeproject.org/files/ENCFF608PZN/@@download/ENCFF608PZN.bed.gz mm10 released mild to moderate bottlenecking ENCFF939PMW bed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF203GWC, ENCFF741HOY, ENCFF925KNX 786384 ENCODE Processing Pipeline 56ec906a5b89ac3e4d81bad01644ebcd https://www.encodeproject.org/files/ENCFF939PMW/@@download/ENCFF939PMW.bed.gz mm10 released mild to moderate bottlenecking ENCFF806NGP bigBed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF871SMF 2068715 ENCODE Processing Pipeline eca2a24de9872d9f5beaa307a3746539 https://www.encodeproject.org/files/ENCFF806NGP/@@download/ENCFF806NGP.bigBed mm10 released mild to moderate bottlenecking ENCFF592YAG bigBed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF608PZN 2100260 ENCODE Processing Pipeline 554ab68941218016bf19267bfc6cd45a https://www.encodeproject.org/files/ENCFF592YAG/@@download/ENCFF592YAG.bigBed mm10 released mild to moderate bottlenecking ENCFF842EFX bigBed narrowPeak peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF939PMW 2220230 ENCODE Processing Pipeline 06595485626b6c22b8b89e90f84b859f https://www.encodeproject.org/files/ENCFF842EFX/@@download/ENCFF842EFX.bigBed mm10 released mild to moderate bottlenecking ENCFF176IEL bigWig signal p-value ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF203GWC, ENCFF741HOY 561285288 ENCODE Processing Pipeline 30e6b59980e6cc78a2d580dacb589d20 https://www.encodeproject.org/files/ENCFF176IEL/@@download/ENCFF176IEL.bigWig mm10 released mild to moderate bottlenecking ENCFF969NSO bigWig signal p-value ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF925KNX 777406631 ENCODE Processing Pipeline 44daa1993a4ff6308cb8adfc76dcbdbf https://www.encodeproject.org/files/ENCFF969NSO/@@download/ENCFF969NSO.bigWig mm10 released mild to moderate bottlenecking ENCFF446MQH bigWig signal p-value ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF203GWC, ENCFF741HOY, ENCFF925KNX 1076398151 ENCODE Processing Pipeline bd283f5a874e464c1a9627fe799f1b4f https://www.encodeproject.org/files/ENCFF446MQH/@@download/ENCFF446MQH.bigWig mm10 released mild to moderate bottlenecking ENCFF237QJQ bigWig fold change over control ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF203GWC, ENCFF741HOY 608557378 ENCODE Processing Pipeline 8d5f08b679158289ef4c0aeab71d2ee1 https://www.encodeproject.org/files/ENCFF237QJQ/@@download/ENCFF237QJQ.bigWig mm10 released mild to moderate bottlenecking ENCFF034ROK bigWig fold change over control ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF925KNX 662537292 ENCODE Processing Pipeline 22e401d2a1507511a196e06e85c398b8 https://www.encodeproject.org/files/ENCFF034ROK/@@download/ENCFF034ROK.bigWig mm10 released mild to moderate bottlenecking ENCFF331OQE bigWig fold change over control ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF203GWC, ENCFF741HOY, ENCFF925KNX 1250919727 ENCODE Processing Pipeline 622fb06f6aea050b74a5df004e3ca2e0 https://www.encodeproject.org/files/ENCFF331OQE/@@download/ENCFF331OQE.bigWig mm10 released mild to moderate bottlenecking ENCFF206VAY bed narrowPeak replicated peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF608PZN, ENCFF871SMF, ENCFF939PMW 827097 ENCODE Processing Pipeline a9238f1c86c5abe02f7c38ca81d605a9 https://www.encodeproject.org/files/ENCFF206VAY/@@download/ENCFF206VAY.bed.gz mm10 released mild to moderate bottlenecking ENCFF271WQC bigBed narrowPeak replicated peaks ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF206VAY 1848056 ENCODE Processing Pipeline 16ba6a76de980cf00dd739ab5b883852 https://www.encodeproject.org/files/ENCFF271WQC/@@download/ENCFF271WQC.bigBed mm10 released mild to moderate bottlenecking ENCFF002AHS fastq reads ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1591424954 Bing Ren, UCSD cb459e16ea56e8980e684b1175dee5f3 SRA:SRR3651282 https://www.encodeproject.org/files/ENCFF002AHS/@@download/ENCFF002AHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APW/ released insufficient read depth, control insufficient read depth ENCFF002AHT fastq reads ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1572568246 Bing Ren, UCSD dda28009c3907fd83e01fc72384b0109 SRA:SRR3651281 https://www.encodeproject.org/files/ENCFF002AHT/@@download/ENCFF002AHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released insufficient read depth, control insufficient read depth ENCFF452TTV bam alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHT, ENCFF806TVZ 1254162075 ENCODE Processing Pipeline b371c3dcf70d14f1b8945912afda849e https://www.encodeproject.org/files/ENCFF452TTV/@@download/ENCFF452TTV.bam mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF249HWA bam alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHS, ENCFF806TVZ 1241790686 ENCODE Processing Pipeline 9182ba07984920ac713be4109f79a8c4 https://www.encodeproject.org/files/ENCFF249HWA/@@download/ENCFF249HWA.bam mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF032EZI bigWig signal p-value ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF249HWA, ENCFF716BBX 396794119 ENCODE Processing Pipeline f7855ca9fbb60e0178657d37257a159a https://www.encodeproject.org/files/ENCFF032EZI/@@download/ENCFF032EZI.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF505MEH bigWig signal p-value ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF249HWA, ENCFF417WKH, ENCFF452TTV, ENCFF716BBX 808927607 ENCODE Processing Pipeline 8a6963abee65bc1d41283b141cb0e7fb https://www.encodeproject.org/files/ENCFF505MEH/@@download/ENCFF505MEH.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF455QDH bigBed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF080BXZ 5249240 ENCODE Processing Pipeline 28a9e27b75b528de6dc249336fecbb24 https://www.encodeproject.org/files/ENCFF455QDH/@@download/ENCFF455QDH.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF080BXZ bed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF452TTV 2487932 ENCODE Processing Pipeline bffbed1c14aa6e64aa1618e548d2cd29 https://www.encodeproject.org/files/ENCFF080BXZ/@@download/ENCFF080BXZ.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF786WUD bed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF249HWA, ENCFF716BBX 2598414 ENCODE Processing Pipeline 90af792157c398464a3f8803b1933a7a https://www.encodeproject.org/files/ENCFF786WUD/@@download/ENCFF786WUD.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF660DCE bed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF249HWA, ENCFF417WKH, ENCFF452TTV, ENCFF716BBX 2456240 ENCODE Processing Pipeline 077ad3e40ce8ed66aca0d2cb3932006f https://www.encodeproject.org/files/ENCFF660DCE/@@download/ENCFF660DCE.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF922KEC bigBed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF786WUD 5548531 ENCODE Processing Pipeline 330255b71db9d772a50f22899fd127ba https://www.encodeproject.org/files/ENCFF922KEC/@@download/ENCFF922KEC.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF742FQC bigBed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF660DCE 5151227 ENCODE Processing Pipeline 3e6d5cac7f636779968c04df583e5f6c https://www.encodeproject.org/files/ENCFF742FQC/@@download/ENCFF742FQC.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF295ZAG bigWig signal p-value ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF452TTV 469218461 ENCODE Processing Pipeline bd9f6515debb06c3f3cd418038cdb566 https://www.encodeproject.org/files/ENCFF295ZAG/@@download/ENCFF295ZAG.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF178RHM bigWig fold change over control ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF249HWA, ENCFF716BBX 447717957 ENCODE Processing Pipeline 84cee9f9cc4355a0883bd46fa4feed97 https://www.encodeproject.org/files/ENCFF178RHM/@@download/ENCFF178RHM.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF922JOS bigWig fold change over control ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF452TTV 432781689 ENCODE Processing Pipeline b5222d32514512c012781ffe38d0bb74 https://www.encodeproject.org/files/ENCFF922JOS/@@download/ENCFF922JOS.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF788NMP bed narrowPeak replicated peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080BXZ, ENCFF660DCE, ENCFF786WUD 1857677 ENCODE Processing Pipeline 3dda3785f05ccb9f8076a2d43d633d38 https://www.encodeproject.org/files/ENCFF788NMP/@@download/ENCFF788NMP.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF329EHD bigWig fold change over control ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF249HWA, ENCFF417WKH, ENCFF452TTV, ENCFF716BBX 839721463 ENCODE Processing Pipeline b4dcc11d34dc750c1997041c09b97d9f https://www.encodeproject.org/files/ENCFF329EHD/@@download/ENCFF329EHD.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF585OXZ bigBed narrowPeak replicated peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF788NMP 3236511 ENCODE Processing Pipeline 5cad967919566abb641e8ce8dd809987 https://www.encodeproject.org/files/ENCFF585OXZ/@@download/ENCFF585OXZ.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF296PZA bam unfiltered alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AHS, ENCFF018NEO 1726387278 ENCODE Processing Pipeline 334efbae4b44c6a8a3e532762d476032 https://www.encodeproject.org/files/ENCFF296PZA/@@download/ENCFF296PZA.bam mm10 released insufficient read depth, control insufficient read depth ENCFF018FYO bam unfiltered alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AHT, ENCFF018NEO 1731896132 ENCODE Processing Pipeline 0b7956655be8563affc000a11ed7ab43 https://www.encodeproject.org/files/ENCFF018FYO/@@download/ENCFF018FYO.bam mm10 released insufficient read depth, control insufficient read depth ENCFF540HFT bam alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AHS, ENCFF018NEO 1241547090 ENCODE Processing Pipeline cb6ab300b79224118abdd5a1d76f2e7b https://www.encodeproject.org/files/ENCFF540HFT/@@download/ENCFF540HFT.bam mm10 released insufficient read depth, control insufficient read depth ENCFF562SMG bam alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AHT, ENCFF018NEO 1253959340 ENCODE Processing Pipeline d025f4787834736ff6991b0de16dbee5 https://www.encodeproject.org/files/ENCFF562SMG/@@download/ENCFF562SMG.bam mm10 released insufficient read depth, control insufficient read depth ENCFF950PPP bed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416UQK, ENCFF540HFT 2598996 ENCODE Processing Pipeline dc8a659e24700c552b5531e6654eb757 https://www.encodeproject.org/files/ENCFF950PPP/@@download/ENCFF950PPP.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF916FVL bed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF562SMG 2488579 ENCODE Processing Pipeline b1e9305f5babc1c5b75e7d248adfd211 https://www.encodeproject.org/files/ENCFF916FVL/@@download/ENCFF916FVL.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF205QRP bigBed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF950PPP 5549942 ENCODE Processing Pipeline eafa038ead3b6148f2596ec100ef6d1f https://www.encodeproject.org/files/ENCFF205QRP/@@download/ENCFF205QRP.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF609SVE bed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF416UQK, ENCFF540HFT, ENCFF562SMG 2432840 ENCODE Processing Pipeline d36171df38ed460107d4b1368777eaca https://www.encodeproject.org/files/ENCFF609SVE/@@download/ENCFF609SVE.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF398NOW bigBed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF916FVL 5250356 ENCODE Processing Pipeline 6bd82a12adeb4e0c72a5bd46221380ba https://www.encodeproject.org/files/ENCFF398NOW/@@download/ENCFF398NOW.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF027ZSF bigWig signal p-value ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416UQK, ENCFF540HFT 396820298 ENCODE Processing Pipeline 58ea23d9dbe1b6da523d43add34a1c63 https://www.encodeproject.org/files/ENCFF027ZSF/@@download/ENCFF027ZSF.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF495PYG bigBed narrowPeak peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF609SVE 5113080 ENCODE Processing Pipeline bd1728c8825a24ba161b18ff755b9b2b https://www.encodeproject.org/files/ENCFF495PYG/@@download/ENCFF495PYG.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF117QZD bigWig signal p-value ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF562SMG 397657675 ENCODE Processing Pipeline 7e2956cfbd56609c3a4da4024960bf85 https://www.encodeproject.org/files/ENCFF117QZD/@@download/ENCFF117QZD.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF965MQB bigWig signal p-value ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF416UQK, ENCFF540HFT, ENCFF562SMG 652957410 ENCODE Processing Pipeline c1b7e2df8a1600071fa508a6cc223edb https://www.encodeproject.org/files/ENCFF965MQB/@@download/ENCFF965MQB.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF976UUX bigWig fold change over control ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416UQK, ENCFF540HFT 447444546 ENCODE Processing Pipeline 5a5302dc129c4578a7d0d64ee72d185c https://www.encodeproject.org/files/ENCFF976UUX/@@download/ENCFF976UUX.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF300NZT bigWig fold change over control ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF562SMG 434826267 ENCODE Processing Pipeline fbbd43dce9e6f7f33a02073d66eb1575 https://www.encodeproject.org/files/ENCFF300NZT/@@download/ENCFF300NZT.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF371WPS bigWig fold change over control ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF416UQK, ENCFF540HFT, ENCFF562SMG 852291079 ENCODE Processing Pipeline 5f372b2450285abaf31139ab7b3633c2 https://www.encodeproject.org/files/ENCFF371WPS/@@download/ENCFF371WPS.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF730ILG bed narrowPeak replicated peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF609SVE, ENCFF916FVL, ENCFF950PPP 1793065 ENCODE Processing Pipeline 965f760515c83dd6ed9bc3a5fa5e831e https://www.encodeproject.org/files/ENCFF730ILG/@@download/ENCFF730ILG.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF341MTI bigBed narrowPeak replicated peaks ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF730ILG 3123700 ENCODE Processing Pipeline 96ab0da4e9f798c22933d631c92e2296 https://www.encodeproject.org/files/ENCFF341MTI/@@download/ENCFF341MTI.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF786TLD fastq reads ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 50 single-ended 1400194429 Bing Ren, UCSD 4eaa65625172c61d8b835a8b6dedefa5 SRA:SRR3653384 https://www.encodeproject.org/files/ENCFF786TLD/@@download/ENCFF786TLD.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF580KHT fastq reads ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 2 50 single-ended 1142982609 Bing Ren, UCSD 524eaf7957da22dbcf9b605fb4cef6b1 SRA:SRR3653385 https://www.encodeproject.org/files/ENCFF580KHT/@@download/ENCFF580KHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF171LNV fastq reads ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 50 single-ended 2199571782 Bing Ren, UCSD 64257f4278482ac4a11998dd070eb1fa SRA:SRR3653386 https://www.encodeproject.org/files/ENCFF171LNV/@@download/ENCFF171LNV.fastq.gz Illumina HiSeq 2000 /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF518RUQ bam alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF171LNV, ENCFF806TVZ 1599711959 ENCODE Processing Pipeline d5e42ba3b9352c29cf8e8c87d78473db https://www.encodeproject.org/files/ENCFF518RUQ/@@download/ENCFF518RUQ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF531ZPD bam alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF580KHT, ENCFF786TLD, ENCFF806TVZ 1789794335 ENCODE Processing Pipeline c92bb13de09f29756249f0be6b6b11a7 https://www.encodeproject.org/files/ENCFF531ZPD/@@download/ENCFF531ZPD.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF408CJI bigWig signal p-value ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF518RUQ, ENCFF711NEU 436650996 ENCODE Processing Pipeline 4e562cab1437bf20a75f47ebed488e87 https://www.encodeproject.org/files/ENCFF408CJI/@@download/ENCFF408CJI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF385MSW bigWig fold change over control ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF236JLN, ENCFF531ZPD 658198455 ENCODE Processing Pipeline 5068af8e437f57852560fc4c1af01923 https://www.encodeproject.org/files/ENCFF385MSW/@@download/ENCFF385MSW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF505JLE bed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF518RUQ, ENCFF711NEU 221792 ENCODE Processing Pipeline e3e2f6311a7de4e43a6ad396a21f5258 https://www.encodeproject.org/files/ENCFF505JLE/@@download/ENCFF505JLE.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF756XIU bigBed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF687MSJ 390604 ENCODE Processing Pipeline f442b35d88f4394f29e1a8520eb98dd2 https://www.encodeproject.org/files/ENCFF756XIU/@@download/ENCFF756XIU.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF754QTE bed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF236JLN, ENCFF518RUQ, ENCFF531ZPD, ENCFF711NEU 266256 ENCODE Processing Pipeline 3c2a8dcab2a2df5fe7d776c67111ab1f https://www.encodeproject.org/files/ENCFF754QTE/@@download/ENCFF754QTE.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF804HQV bigWig signal p-value ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF236JLN, ENCFF531ZPD 564851046 ENCODE Processing Pipeline 5aa4f76ce1c0257499e85b6a3c0fecc6 https://www.encodeproject.org/files/ENCFF804HQV/@@download/ENCFF804HQV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF836RJV bigBed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF505JLE 432135 ENCODE Processing Pipeline 091981406b1ba862006fca0c465661e4 https://www.encodeproject.org/files/ENCFF836RJV/@@download/ENCFF836RJV.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF331XKJ bigBed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF754QTE 616662 ENCODE Processing Pipeline 01fb7a8f02a2fe8c0885a96182d25f01 https://www.encodeproject.org/files/ENCFF331XKJ/@@download/ENCFF331XKJ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF959CFY bigWig signal p-value ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF236JLN, ENCFF518RUQ, ENCFF531ZPD, ENCFF711NEU 928902784 ENCODE Processing Pipeline 0020feda576903bc9c80574aa7876f9a https://www.encodeproject.org/files/ENCFF959CFY/@@download/ENCFF959CFY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF687MSJ bed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF236JLN, ENCFF531ZPD 197134 ENCODE Processing Pipeline b4d5e3032b8a74b593af5672e4958ff6 https://www.encodeproject.org/files/ENCFF687MSJ/@@download/ENCFF687MSJ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF004JIM bigWig fold change over control ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF236JLN, ENCFF518RUQ, ENCFF531ZPD, ENCFF711NEU 1184228426 ENCODE Processing Pipeline 706bfb4f663d1a641283e3548c62b322 https://www.encodeproject.org/files/ENCFF004JIM/@@download/ENCFF004JIM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF754QFN bigWig fold change over control ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF518RUQ, ENCFF711NEU 570261775 ENCODE Processing Pipeline c5bc4cdbc9b80e0d425e343ab66fca2e https://www.encodeproject.org/files/ENCFF754QFN/@@download/ENCFF754QFN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF284GCQ bigBed narrowPeak replicated peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF238BQP 174902 ENCODE Processing Pipeline f538eab0a81a730dd3b364065fd2408a https://www.encodeproject.org/files/ENCFF284GCQ/@@download/ENCFF284GCQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF238BQP bed narrowPeak replicated peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF505JLE, ENCFF687MSJ, ENCFF754QTE 34267 ENCODE Processing Pipeline 79105c42a32ecf8632148c5f72cac43b https://www.encodeproject.org/files/ENCFF238BQP/@@download/ENCFF238BQP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF431CLH bam unfiltered alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF580KHT, ENCFF786TLD 3106246841 ENCODE Processing Pipeline b7c22c81b9962792884d1c48f8301055 https://www.encodeproject.org/files/ENCFF431CLH/@@download/ENCFF431CLH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF801OWR bam unfiltered alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF171LNV 2693275596 ENCODE Processing Pipeline 3555d9ab7a833dc28223b3cd57e18034 https://www.encodeproject.org/files/ENCFF801OWR/@@download/ENCFF801OWR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF935OGA bam alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF171LNV 1599018732 ENCODE Processing Pipeline d3bf8920d7bc5ad37f8b9a7e7d880e04 https://www.encodeproject.org/files/ENCFF935OGA/@@download/ENCFF935OGA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF327HTH bam alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF580KHT, ENCFF786TLD 1789121532 ENCODE Processing Pipeline d9e86d74bbd2a3cc7a94fbb0ac5b6b85 https://www.encodeproject.org/files/ENCFF327HTH/@@download/ENCFF327HTH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF966DCW bed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF125FAE, ENCFF327HTH, ENCFF580YCN, ENCFF935OGA 317620 ENCODE Processing Pipeline 6c81ff922915f20720030fb377b0f6a0 https://www.encodeproject.org/files/ENCFF966DCW/@@download/ENCFF966DCW.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF640UHI bed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF935OGA 305868 ENCODE Processing Pipeline 219b98e0d494f4cb3f7cd5e202778ffc https://www.encodeproject.org/files/ENCFF640UHI/@@download/ENCFF640UHI.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF190QAV bed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF125FAE, ENCFF327HTH, ENCFF580YCN 228467 ENCODE Processing Pipeline 7ecf1c22456b69d3f73b89843abdf1f6 https://www.encodeproject.org/files/ENCFF190QAV/@@download/ENCFF190QAV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF847QGR bigBed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF640UHI 549950 ENCODE Processing Pipeline 0c85637a6823fa865f49133199426e12 https://www.encodeproject.org/files/ENCFF847QGR/@@download/ENCFF847QGR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF175UYR bigBed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF190QAV 440233 ENCODE Processing Pipeline fe4857eae81b7031fb0fdb6abcba2b78 https://www.encodeproject.org/files/ENCFF175UYR/@@download/ENCFF175UYR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF814CHZ bigBed narrowPeak peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF966DCW 707753 ENCODE Processing Pipeline 6da5b3bef4d24affbdd8961a49b5c736 https://www.encodeproject.org/files/ENCFF814CHZ/@@download/ENCFF814CHZ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF885SPF bigWig signal p-value ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF125FAE, ENCFF327HTH, ENCFF580YCN 923672742 ENCODE Processing Pipeline 6b8a60bb68de90b642a581e80cd985e5 https://www.encodeproject.org/files/ENCFF885SPF/@@download/ENCFF885SPF.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF313SBH bigWig signal p-value ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF935OGA 763074344 ENCODE Processing Pipeline d347a3a5e01f3753d61c96210b3f0918 https://www.encodeproject.org/files/ENCFF313SBH/@@download/ENCFF313SBH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF300WMP bigWig signal p-value ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF125FAE, ENCFF327HTH, ENCFF580YCN, ENCFF935OGA 1153148808 ENCODE Processing Pipeline 8948d5f21b74e811e73c170e773906e7 https://www.encodeproject.org/files/ENCFF300WMP/@@download/ENCFF300WMP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF185JQG bigWig fold change over control ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF125FAE, ENCFF327HTH, ENCFF580YCN 973397121 ENCODE Processing Pipeline c7f332fbd7d09341ac2bbed516899af0 https://www.encodeproject.org/files/ENCFF185JQG/@@download/ENCFF185JQG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF620MWH bigWig fold change over control ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF935OGA 887988774 ENCODE Processing Pipeline 361f0bb0234754c767f350ea8510e6bd https://www.encodeproject.org/files/ENCFF620MWH/@@download/ENCFF620MWH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF417JCK bigWig fold change over control ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF125FAE, ENCFF327HTH, ENCFF580YCN, ENCFF935OGA 1335148626 ENCODE Processing Pipeline e0ede789dfbd93b61fb884c498eeb9ee https://www.encodeproject.org/files/ENCFF417JCK/@@download/ENCFF417JCK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF024CYU bed narrowPeak replicated peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF190QAV, ENCFF640UHI, ENCFF966DCW 39455 ENCODE Processing Pipeline 7e997b6ec002d5bea138d3399b9c5217 https://www.encodeproject.org/files/ENCFF024CYU/@@download/ENCFF024CYU.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF684JPP bigBed narrowPeak replicated peaks ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF024CYU 192021 ENCODE Processing Pipeline 43f6d6bbd91ffefc815ddaa0093ab7b3 https://www.encodeproject.org/files/ENCFF684JPP/@@download/ENCFF684JPP.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF346LFH fastq reads ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 2341619239 Bing Ren, UCSD fc240c63049d001505ef126492fbc7b6 SRA:SRR3652652 https://www.encodeproject.org/files/ENCFF346LFH/@@download/ENCFF346LFH.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF440KRN fastq reads ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 2819039941 Bing Ren, UCSD 0b1990c85546cce63ba4ba9e0e086fc5 SRA:SRR3652651 https://www.encodeproject.org/files/ENCFF440KRN/@@download/ENCFF440KRN.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF630SQJ fastq reads ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 1 2 50 single-ended 193873997 Bing Ren, UCSD e6ddb6c5006079bc3e1c27e7aeb3a0c8 SRA:SRR3652653 https://www.encodeproject.org/files/ENCFF630SQJ/@@download/ENCFF630SQJ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF720CTQ bam alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF440KRN, ENCFF806TVZ 2636667352 ENCODE Processing Pipeline 770bd0dec66697e61040c51b46d7a097 https://www.encodeproject.org/files/ENCFF720CTQ/@@download/ENCFF720CTQ.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF294RLZ bam alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF346LFH, ENCFF630SQJ, ENCFF806TVZ 2407142605 ENCODE Processing Pipeline 411489d50d47b7ff3fa75f9ddd1d89dc https://www.encodeproject.org/files/ENCFF294RLZ/@@download/ENCFF294RLZ.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF981IPZ bam unfiltered alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF018NEO, ENCFF346LFH, ENCFF630SQJ 3418488166 ENCODE Processing Pipeline f7728c0b7d286b93fe11cfd45deb760e https://www.encodeproject.org/files/ENCFF981IPZ/@@download/ENCFF981IPZ.bam mm10 released sequencing runs labeled as technical replicates ENCFF961LZY bam unfiltered alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF018NEO, ENCFF440KRN 3747471229 ENCODE Processing Pipeline 7f13381e0b5d96d3d54bb9faad9fb506 https://www.encodeproject.org/files/ENCFF961LZY/@@download/ENCFF961LZY.bam mm10 released sequencing runs labeled as technical replicates ENCFF741HOY bam alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF346LFH, ENCFF630SQJ 2406496693 ENCODE Processing Pipeline 4df4482284a14d19c3013198484cc078 https://www.encodeproject.org/files/ENCFF741HOY/@@download/ENCFF741HOY.bam mm10 released sequencing runs labeled as technical replicates ENCFF104UXG bam alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF440KRN 2635876228 ENCODE Processing Pipeline 8a1caf404a2022278af4cf729cc02b3d https://www.encodeproject.org/files/ENCFF104UXG/@@download/ENCFF104UXG.bam mm10 released sequencing runs labeled as technical replicates ENCFF505FOW fastq reads ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1335235312 Bing Ren, UCSD 2d9ecced14daa86131b767967b499518 SRA:SRR3651553 https://www.encodeproject.org/files/ENCFF505FOW/@@download/ENCFF505FOW.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/, /files/ENCFF751HMJ/ released mild to moderate bottlenecking ENCFF526MLY fastq reads ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1347579757 Bing Ren, UCSD 9957efa60c7f68ef1340486a4116a9a4 SRA:SRR3651552 https://www.encodeproject.org/files/ENCFF526MLY/@@download/ENCFF526MLY.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/, /files/ENCFF884YRX/ released mild to moderate bottlenecking ENCFF454YIK bam alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF526MLY, ENCFF806TVZ 1267380444 ENCODE Processing Pipeline 1db78486748ebc9bbefa9f1f5b85cefd https://www.encodeproject.org/files/ENCFF454YIK/@@download/ENCFF454YIK.bam mm10-minimal archived mild to moderate bottlenecking ENCFF414ZCL bam alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF505FOW, ENCFF806TVZ 1166328246 ENCODE Processing Pipeline 42956f21bc671b6516a14e3dcb80861b https://www.encodeproject.org/files/ENCFF414ZCL/@@download/ENCFF414ZCL.bam mm10-minimal archived mild to moderate bottlenecking ENCFF567XPG bed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF454YIK, ENCFF980WPU 779632 ENCODE Processing Pipeline 1a0935ab08a7fcad04a1cd1f7041da75 https://www.encodeproject.org/files/ENCFF567XPG/@@download/ENCFF567XPG.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF100GMK bigBed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF711ZJH 2724497 ENCODE Processing Pipeline e5089f9b21afce6565fede8e308adf1a https://www.encodeproject.org/files/ENCFF100GMK/@@download/ENCFF100GMK.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF709BML bigBed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF567XPG 2454997 ENCODE Processing Pipeline 4b5ba5162624d4f564c1ed8dad3b9d0b https://www.encodeproject.org/files/ENCFF709BML/@@download/ENCFF709BML.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF668LSU bigBed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF747OGZ 2824661 ENCODE Processing Pipeline 7dc39aa30cf7efba8c96e1bc5322100d https://www.encodeproject.org/files/ENCFF668LSU/@@download/ENCFF668LSU.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF711ZJH bed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF414ZCL 872865 ENCODE Processing Pipeline d1ed0adb6368c71ed00e8b8851cf33f9 https://www.encodeproject.org/files/ENCFF711ZJH/@@download/ENCFF711ZJH.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF747OGZ bed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF414ZCL, ENCFF454YIK, ENCFF980WPU 929209 ENCODE Processing Pipeline 19a629e800dd537b4354671901a488aa https://www.encodeproject.org/files/ENCFF747OGZ/@@download/ENCFF747OGZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF387FIM bigWig signal p-value ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF454YIK, ENCFF980WPU 615322181 ENCODE Processing Pipeline 61fdef4033179eae70a19c332649695d https://www.encodeproject.org/files/ENCFF387FIM/@@download/ENCFF387FIM.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF932NNH bigWig signal p-value ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF414ZCL 564230691 ENCODE Processing Pipeline 3c0f89ca7eecbcb06b6d5c8b9ce20145 https://www.encodeproject.org/files/ENCFF932NNH/@@download/ENCFF932NNH.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF520XEK bigWig signal p-value ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF414ZCL, ENCFF454YIK, ENCFF980WPU 932668376 ENCODE Processing Pipeline 3dcc3fc7c7294d0734a64fbf16afc5ee https://www.encodeproject.org/files/ENCFF520XEK/@@download/ENCFF520XEK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF538PIT bigWig fold change over control ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF414ZCL 601442861 ENCODE Processing Pipeline 112a2ec30b01b77c54d2c0793fb35a67 https://www.encodeproject.org/files/ENCFF538PIT/@@download/ENCFF538PIT.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF940PRW bigWig fold change over control ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF454YIK, ENCFF980WPU 617577161 ENCODE Processing Pipeline fd1670f7421dcaaaf4ff3e762a94916a https://www.encodeproject.org/files/ENCFF940PRW/@@download/ENCFF940PRW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF891VND bigWig fold change over control ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF414ZCL, ENCFF454YIK, ENCFF980WPU 1193879565 ENCODE Processing Pipeline 68e8d13887011641f071e7070469ef37 https://www.encodeproject.org/files/ENCFF891VND/@@download/ENCFF891VND.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF928YPO bed narrowPeak replicated peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF567XPG, ENCFF711ZJH, ENCFF747OGZ 912067 ENCODE Processing Pipeline 7d7dcfd34e45f81d889b4657e9dc3d46 https://www.encodeproject.org/files/ENCFF928YPO/@@download/ENCFF928YPO.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF432MSB bigBed narrowPeak replicated peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF928YPO 2085496 ENCODE Processing Pipeline 2dc466646750bb0ce664303c71268d59 https://www.encodeproject.org/files/ENCFF432MSB/@@download/ENCFF432MSB.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF049ZOM bam unfiltered alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF505FOW 1704768799 ENCODE Processing Pipeline d37fe93d13db7e7dde210dfb3157725f https://www.encodeproject.org/files/ENCFF049ZOM/@@download/ENCFF049ZOM.bam mm10 released mild to moderate bottlenecking ENCFF775UPV bam unfiltered alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF526MLY 1755092495 ENCODE Processing Pipeline 3abf7cd846505329c392fdcd8ebbfd86 https://www.encodeproject.org/files/ENCFF775UPV/@@download/ENCFF775UPV.bam mm10 released mild to moderate bottlenecking ENCFF710GWJ bam alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF505FOW 1166080557 ENCODE Processing Pipeline ead8d2fd9c4b59d6975a26facdba1162 https://www.encodeproject.org/files/ENCFF710GWJ/@@download/ENCFF710GWJ.bam mm10 released mild to moderate bottlenecking ENCFF935UMH bam alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF526MLY 1267127569 ENCODE Processing Pipeline f730048dae77d906552e7e5f07fcea71 https://www.encodeproject.org/files/ENCFF935UMH/@@download/ENCFF935UMH.bam mm10 released mild to moderate bottlenecking ENCFF971MXX bed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF609XDL, ENCFF935UMH 778614 ENCODE Processing Pipeline 18ec5fc5319c0e2f3274322179fd0fba https://www.encodeproject.org/files/ENCFF971MXX/@@download/ENCFF971MXX.bed.gz mm10 released mild to moderate bottlenecking ENCFF181WXE bed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF710GWJ 867956 ENCODE Processing Pipeline de292365586cb281839032e320ce0a4b https://www.encodeproject.org/files/ENCFF181WXE/@@download/ENCFF181WXE.bed.gz mm10 released mild to moderate bottlenecking ENCFF389KXU bed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF609XDL, ENCFF710GWJ, ENCFF935UMH 929319 ENCODE Processing Pipeline 2df1898110e642aeb699c6f164d37d52 https://www.encodeproject.org/files/ENCFF389KXU/@@download/ENCFF389KXU.bed.gz mm10 released mild to moderate bottlenecking ENCFF960IUE bigBed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF181WXE 2715414 ENCODE Processing Pipeline 99bfde1cf437781faf86bec9fc8f6682 https://www.encodeproject.org/files/ENCFF960IUE/@@download/ENCFF960IUE.bigBed mm10 released mild to moderate bottlenecking ENCFF818DNG bigBed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF389KXU 2833103 ENCODE Processing Pipeline f0b10426999d01620335f10a98ae94b3 https://www.encodeproject.org/files/ENCFF818DNG/@@download/ENCFF818DNG.bigBed mm10 released mild to moderate bottlenecking ENCFF203SRI bigBed narrowPeak peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF971MXX 2463849 ENCODE Processing Pipeline f1f05495a8f7cd06c56adc4af8dfc600 https://www.encodeproject.org/files/ENCFF203SRI/@@download/ENCFF203SRI.bigBed mm10 released mild to moderate bottlenecking ENCFF435QDW bigWig signal p-value ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF710GWJ 531719347 ENCODE Processing Pipeline ee8ee5e853d04f2df7651e8ba6f89ff2 https://www.encodeproject.org/files/ENCFF435QDW/@@download/ENCFF435QDW.bigWig mm10 released mild to moderate bottlenecking ENCFF762CZX bigWig signal p-value ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF609XDL, ENCFF935UMH 705959832 ENCODE Processing Pipeline 3ea76a93936ff5e58106241d5308867f https://www.encodeproject.org/files/ENCFF762CZX/@@download/ENCFF762CZX.bigWig mm10 released mild to moderate bottlenecking ENCFF852KEG bigWig signal p-value ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF609XDL, ENCFF710GWJ, ENCFF935UMH 1246441501 ENCODE Processing Pipeline cfa28af6e6f69e58ac0c34422fa1e015 https://www.encodeproject.org/files/ENCFF852KEG/@@download/ENCFF852KEG.bigWig mm10 released mild to moderate bottlenecking ENCFF857JVF bigWig fold change over control ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF710GWJ 608051662 ENCODE Processing Pipeline ea74b8a98f2faa283560cb87ce1f9944 https://www.encodeproject.org/files/ENCFF857JVF/@@download/ENCFF857JVF.bigWig mm10 released mild to moderate bottlenecking ENCFF273EUX bigWig fold change over control ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF609XDL, ENCFF935UMH 659218847 ENCODE Processing Pipeline 9a2e3ab0259f1dc3cdf48b137346716c https://www.encodeproject.org/files/ENCFF273EUX/@@download/ENCFF273EUX.bigWig mm10 released mild to moderate bottlenecking ENCFF877WYE bigWig fold change over control ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF609XDL, ENCFF710GWJ, ENCFF935UMH 1199896553 ENCODE Processing Pipeline d26ee6c86ef61ca95d168f1e9fe2e626 https://www.encodeproject.org/files/ENCFF877WYE/@@download/ENCFF877WYE.bigWig mm10 released mild to moderate bottlenecking ENCFF864INF bed narrowPeak replicated peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF181WXE, ENCFF389KXU, ENCFF971MXX 944621 ENCODE Processing Pipeline 0c33e9b90de3da0db8975ee815e347f4 https://www.encodeproject.org/files/ENCFF864INF/@@download/ENCFF864INF.bed.gz mm10 released mild to moderate bottlenecking ENCFF851LFH bigBed narrowPeak replicated peaks ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF864INF 2155179 ENCODE Processing Pipeline 4adef9976ae7ce394eed27265bfbf51c https://www.encodeproject.org/files/ENCFF851LFH/@@download/ENCFF851LFH.bigBed mm10 released mild to moderate bottlenecking ENCFF557IPG fastq reads ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1961643086 Bing Ren, UCSD 36dcfe0e0ece4b254eb6902c8b2150bc SRA:SRR3653083 https://www.encodeproject.org/files/ENCFF557IPG/@@download/ENCFF557IPG.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF664DHP fastq reads ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1757635463 Bing Ren, UCSD 0ce39f7116eae5d66845a0730d76d247 SRA:SRR3653082 https://www.encodeproject.org/files/ENCFF664DHP/@@download/ENCFF664DHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF355IWH bam alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF664DHP, ENCFF806TVZ 1245190502 ENCODE Processing Pipeline a8a091ac756e24ef666885a9188fbd31 https://www.encodeproject.org/files/ENCFF355IWH/@@download/ENCFF355IWH.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF939KIB bam alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF557IPG, ENCFF806TVZ 1377692496 ENCODE Processing Pipeline e8768057c6d57bee18f2b400ef5c716f https://www.encodeproject.org/files/ENCFF939KIB/@@download/ENCFF939KIB.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF024CZV bed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF355IWH 906318 ENCODE Processing Pipeline 7cf083478722fb0058986418ed883eca https://www.encodeproject.org/files/ENCFF024CZV/@@download/ENCFF024CZV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF443FUU bigBed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF024CZV 2810903 ENCODE Processing Pipeline eedaa7017f9081b9ef4fbee78128270e https://www.encodeproject.org/files/ENCFF443FUU/@@download/ENCFF443FUU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF120EHS bed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF355IWH, ENCFF939KIB 998168 ENCODE Processing Pipeline a98d72264feee79b832d9e986143ecbd https://www.encodeproject.org/files/ENCFF120EHS/@@download/ENCFF120EHS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF487MBE bigBed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF120EHS 2952247 ENCODE Processing Pipeline 1345a5e4fb0ca9678676f77cc150d49f https://www.encodeproject.org/files/ENCFF487MBE/@@download/ENCFF487MBE.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF636PPX bed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314ZXJ, ENCFF939KIB 888045 ENCODE Processing Pipeline c8501df338d7e85f1ff53f1beb3271d4 https://www.encodeproject.org/files/ENCFF636PPX/@@download/ENCFF636PPX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF017ZNU bigWig signal p-value ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF355IWH 572711234 ENCODE Processing Pipeline 115071017e1a641f47815cab1da50cf3 https://www.encodeproject.org/files/ENCFF017ZNU/@@download/ENCFF017ZNU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF297CYU bigBed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF636PPX 2755134 ENCODE Processing Pipeline b1306e02ae1fd6ad1e941d073e73f85b https://www.encodeproject.org/files/ENCFF297CYU/@@download/ENCFF297CYU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF517ELR bigWig signal p-value ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314ZXJ, ENCFF939KIB 554121283 ENCODE Processing Pipeline 0d5a874669ccc4d794aaa8b0fd338599 https://www.encodeproject.org/files/ENCFF517ELR/@@download/ENCFF517ELR.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF539ZQA bigWig signal p-value ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF355IWH, ENCFF939KIB 913834508 ENCODE Processing Pipeline 878229d7e894d5a7ad0fb8dc8b0a13e6 https://www.encodeproject.org/files/ENCFF539ZQA/@@download/ENCFF539ZQA.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF580ULZ bigWig fold change over control ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF355IWH 466975205 ENCODE Processing Pipeline 79c71e6f4b8cc40374b15439123ada22 https://www.encodeproject.org/files/ENCFF580ULZ/@@download/ENCFF580ULZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF804GRB bigWig fold change over control ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314ZXJ, ENCFF939KIB 513462430 ENCODE Processing Pipeline 6b95dbba85b6749860872456e69f2c3d https://www.encodeproject.org/files/ENCFF804GRB/@@download/ENCFF804GRB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF709KGI bigWig fold change over control ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF355IWH, ENCFF939KIB 967579928 ENCODE Processing Pipeline 2d4b6733ba5d9840dab76b361700d5c0 https://www.encodeproject.org/files/ENCFF709KGI/@@download/ENCFF709KGI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF096LPA bed narrowPeak replicated peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF024CZV, ENCFF120EHS, ENCFF636PPX 1092224 ENCODE Processing Pipeline 9b877d8d5af493d3f847185c5d03a446 https://www.encodeproject.org/files/ENCFF096LPA/@@download/ENCFF096LPA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF321LOU bigBed narrowPeak replicated peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF096LPA 2376316 ENCODE Processing Pipeline db132d4b879b5c34eb60a06adbad6f17 https://www.encodeproject.org/files/ENCFF321LOU/@@download/ENCFF321LOU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF960SXY bam unfiltered alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF664DHP 1903580862 ENCODE Processing Pipeline 196029c4bf2baa19ad0d283f41f2ee12 https://www.encodeproject.org/files/ENCFF960SXY/@@download/ENCFF960SXY.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF597DTT bam unfiltered alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF557IPG 2151714748 ENCODE Processing Pipeline d18dd17eecfa6aedbc0eff28f3aa8322 https://www.encodeproject.org/files/ENCFF597DTT/@@download/ENCFF597DTT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF317EGK bam alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF557IPG 1377543504 ENCODE Processing Pipeline 8581e3535c8180b67b98a012e0a9450d https://www.encodeproject.org/files/ENCFF317EGK/@@download/ENCFF317EGK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF705OKE bam alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF664DHP 1245103552 ENCODE Processing Pipeline 944814ea412ee5b39d4d6cc0e23950f3 https://www.encodeproject.org/files/ENCFF705OKE/@@download/ENCFF705OKE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF404YOZ bed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF615JIE, ENCFF705OKE 892627 ENCODE Processing Pipeline 0e0eaa805d8e14bde09ad7519fbd674f https://www.encodeproject.org/files/ENCFF404YOZ/@@download/ENCFF404YOZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF345DVQ bed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF317EGK, ENCFF615JIE, ENCFF705OKE 994905 ENCODE Processing Pipeline a12b1e9cb5192de0332eda0a55d59c83 https://www.encodeproject.org/files/ENCFF345DVQ/@@download/ENCFF345DVQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF604MZR bed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF317EGK 897362 ENCODE Processing Pipeline f1de67f85364be483ff0b5f21ae5c3d1 https://www.encodeproject.org/files/ENCFF604MZR/@@download/ENCFF604MZR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF715XFA bigBed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF404YOZ 2772943 ENCODE Processing Pipeline 493342bd7cc004b42687442ab21e1859 https://www.encodeproject.org/files/ENCFF715XFA/@@download/ENCFF715XFA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF069TKI bigBed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF345DVQ 2948379 ENCODE Processing Pipeline cb4bfcbbf2aaa830766de9ad3d5fa43f https://www.encodeproject.org/files/ENCFF069TKI/@@download/ENCFF069TKI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF264UTP bigBed narrowPeak peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF604MZR 2771840 ENCODE Processing Pipeline f4899b2fdfe256e598eaf66ec43e19be https://www.encodeproject.org/files/ENCFF264UTP/@@download/ENCFF264UTP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF376BCD bigWig signal p-value ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF615JIE, ENCFF705OKE 577159015 ENCODE Processing Pipeline 207e8c19fe3e459f6dbbea92ef19c7e0 https://www.encodeproject.org/files/ENCFF376BCD/@@download/ENCFF376BCD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF944DLA bigWig signal p-value ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF317EGK 536000790 ENCODE Processing Pipeline 903c2be19e15062420347841aa535830 https://www.encodeproject.org/files/ENCFF944DLA/@@download/ENCFF944DLA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF320JBJ bigWig signal p-value ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF317EGK, ENCFF615JIE, ENCFF705OKE 901414866 ENCODE Processing Pipeline d2d91e837dffd33953a158e12725db7b https://www.encodeproject.org/files/ENCFF320JBJ/@@download/ENCFF320JBJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF222NKK bigWig fold change over control ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF615JIE, ENCFF705OKE 497458440 ENCODE Processing Pipeline 7b401ce1853110e0495a07acd9784dbf https://www.encodeproject.org/files/ENCFF222NKK/@@download/ENCFF222NKK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF096JAQ bigWig fold change over control ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF317EGK 544196878 ENCODE Processing Pipeline 9f79258cc1f8a5c9a78b3c124d8ffe34 https://www.encodeproject.org/files/ENCFF096JAQ/@@download/ENCFF096JAQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF074EMQ bigWig fold change over control ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF317EGK, ENCFF615JIE, ENCFF705OKE 1047633359 ENCODE Processing Pipeline b8a83734acf1d5de094503ba98e82f0c https://www.encodeproject.org/files/ENCFF074EMQ/@@download/ENCFF074EMQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF827TNA bed narrowPeak replicated peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF345DVQ, ENCFF404YOZ, ENCFF604MZR 1091738 ENCODE Processing Pipeline b2e2352c986bfdc928fd79caa8e9ce2c https://www.encodeproject.org/files/ENCFF827TNA/@@download/ENCFF827TNA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF595IXK bigBed narrowPeak replicated peaks ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF827TNA 2378244 ENCODE Processing Pipeline d17c4153766f62ba3b282d803999ee85 https://www.encodeproject.org/files/ENCFF595IXK/@@download/ENCFF595IXK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF002ESA fastq reads ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1149909865 Bing Ren, UCSD 74ecf41fb7a4e323e29f38e12ff6e35a SRA:SRR3652707 https://www.encodeproject.org/files/ENCFF002ESA/@@download/ENCFF002ESA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXM/ released low read length insufficient read depth, control insufficient read depth ENCFF002ESD fastq reads ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1275393619 Bing Ren, UCSD ff2325aef5b1bbf929b2058ec881f5ae SRA:SRR3652706 https://www.encodeproject.org/files/ENCFF002ESD/@@download/ENCFF002ESD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXL/ released low read length insufficient read depth, control insufficient read depth ENCFF304MCO bam alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESD, ENCFF806TVZ 1148032520 ENCODE Processing Pipeline 6ab15458999873b327295b2f84a4d7c4 https://www.encodeproject.org/files/ENCFF304MCO/@@download/ENCFF304MCO.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF731UDR bam alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESA, ENCFF806TVZ 1015621996 ENCODE Processing Pipeline 424540e657d1b0641cbea87ef32fa61c https://www.encodeproject.org/files/ENCFF731UDR/@@download/ENCFF731UDR.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF625VFF bed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF304MCO, ENCFF395ALO, ENCFF731UDR, ENCFF956BKJ 543093 ENCODE Processing Pipeline b4474c35f3891fbe8d5825bda334aef2 https://www.encodeproject.org/files/ENCFF625VFF/@@download/ENCFF625VFF.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF458GOJ bed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF304MCO, ENCFF395ALO, ENCFF956BKJ 1116810 ENCODE Processing Pipeline 5ffaa072733dee3c063e6a4d22d190cd https://www.encodeproject.org/files/ENCFF458GOJ/@@download/ENCFF458GOJ.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF632DBF bed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF731UDR, ENCFF956BKJ 1167629 ENCODE Processing Pipeline 54cc05e0e80133c0fd10d7c81406ae71 https://www.encodeproject.org/files/ENCFF632DBF/@@download/ENCFF632DBF.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF859QYM bigBed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF458GOJ 2617673 ENCODE Processing Pipeline 610f95372187f8e858ab22be4ec69dbd https://www.encodeproject.org/files/ENCFF859QYM/@@download/ENCFF859QYM.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF311MPC bigBed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF632DBF 2653166 ENCODE Processing Pipeline 95548ac7e13b26f4174f84fb986754d3 https://www.encodeproject.org/files/ENCFF311MPC/@@download/ENCFF311MPC.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF804LLW bigBed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF625VFF 1475594 ENCODE Processing Pipeline 10529ebf039a097d93f1d6bf21d75935 https://www.encodeproject.org/files/ENCFF804LLW/@@download/ENCFF804LLW.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF545TEB bigWig signal p-value ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF304MCO, ENCFF395ALO, ENCFF956BKJ 499647098 ENCODE Processing Pipeline f74ac45a9ecb143bfe781b19319cc94d https://www.encodeproject.org/files/ENCFF545TEB/@@download/ENCFF545TEB.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF491IQU bigWig signal p-value ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF731UDR, ENCFF956BKJ 437684502 ENCODE Processing Pipeline 78e83b908b3dbb24ae0086f58330f442 https://www.encodeproject.org/files/ENCFF491IQU/@@download/ENCFF491IQU.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF981WPJ bigWig signal p-value ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF304MCO, ENCFF395ALO, ENCFF731UDR, ENCFF956BKJ 514159823 ENCODE Processing Pipeline eeaaa17ce3d82e56af0ce11b06e0d09f https://www.encodeproject.org/files/ENCFF981WPJ/@@download/ENCFF981WPJ.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF292ZPV bigWig fold change over control ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF304MCO, ENCFF395ALO, ENCFF956BKJ 494660267 ENCODE Processing Pipeline b7a4f71ff662c4033ee0402c7307bf5a https://www.encodeproject.org/files/ENCFF292ZPV/@@download/ENCFF292ZPV.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF437NCF bigWig fold change over control ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF731UDR, ENCFF956BKJ 455707209 ENCODE Processing Pipeline b5f7f47814b2f3e102aa73a27e68903f https://www.encodeproject.org/files/ENCFF437NCF/@@download/ENCFF437NCF.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF284QSW bigBed narrowPeak replicated peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF497DFS 1286521 ENCODE Processing Pipeline 6e131d39f227ca1e19551987179a8dea https://www.encodeproject.org/files/ENCFF284QSW/@@download/ENCFF284QSW.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF337XFV bigWig fold change over control ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF304MCO, ENCFF395ALO, ENCFF731UDR, ENCFF956BKJ 760315051 ENCODE Processing Pipeline 6ed19dcf0c36a9b8fe62af97d93a6a8b https://www.encodeproject.org/files/ENCFF337XFV/@@download/ENCFF337XFV.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF497DFS bed narrowPeak replicated peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF458GOJ, ENCFF625VFF, ENCFF632DBF 561260 ENCODE Processing Pipeline e22584ce4da3ee2e8d116b20c9fe39fc https://www.encodeproject.org/files/ENCFF497DFS/@@download/ENCFF497DFS.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF161ASY bam unfiltered alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESD, ENCFF018NEO 1692327209 ENCODE Processing Pipeline 5b3de0e4f3858889dc7de23381f11ced https://www.encodeproject.org/files/ENCFF161ASY/@@download/ENCFF161ASY.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF746DZR bam unfiltered alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESA, ENCFF018NEO 1522058555 ENCODE Processing Pipeline 1819da57db47e7d362d10347a9fc20f8 https://www.encodeproject.org/files/ENCFF746DZR/@@download/ENCFF746DZR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF583MKP bam alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESD, ENCFF018NEO 1147784817 ENCODE Processing Pipeline 3cc596c6d1e16cd36923e902aa8357d7 https://www.encodeproject.org/files/ENCFF583MKP/@@download/ENCFF583MKP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF060DCN bam alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESA, ENCFF018NEO 1015428200 ENCODE Processing Pipeline 3616571f0e6cf0133c3168621578ba38 https://www.encodeproject.org/files/ENCFF060DCN/@@download/ENCFF060DCN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF313EJH bed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF583MKP 894962 ENCODE Processing Pipeline 67977ca60bbcf4ff4614d46353dc34fd https://www.encodeproject.org/files/ENCFF313EJH/@@download/ENCFF313EJH.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF738PMX bed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF060DCN, ENCFF488PXJ 470444 ENCODE Processing Pipeline 8de8c5982e11b6eb373f9e7ec7be6352 https://www.encodeproject.org/files/ENCFF738PMX/@@download/ENCFF738PMX.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF476NRG bed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF060DCN, ENCFF488PXJ, ENCFF583MKP 557377 ENCODE Processing Pipeline 89c309e6afaaad73e3fabd13359e295b https://www.encodeproject.org/files/ENCFF476NRG/@@download/ENCFF476NRG.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF577AOF bigBed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF313EJH 2071815 ENCODE Processing Pipeline 6ea5b63780d4427231341a7bdf086d91 https://www.encodeproject.org/files/ENCFF577AOF/@@download/ENCFF577AOF.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF603JMY bigBed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF738PMX 1117938 ENCODE Processing Pipeline 2652d6c15966780cd24203b86e67ecda https://www.encodeproject.org/files/ENCFF603JMY/@@download/ENCFF603JMY.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF689YOR bigBed narrowPeak peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF476NRG 1513364 ENCODE Processing Pipeline d42702938851af7f6acfb7117d8b2ba6 https://www.encodeproject.org/files/ENCFF689YOR/@@download/ENCFF689YOR.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF915IRY bigWig signal p-value ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF583MKP 502662580 ENCODE Processing Pipeline 69b94357c3f4dad896f62d68907f106a https://www.encodeproject.org/files/ENCFF915IRY/@@download/ENCFF915IRY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF405KEN bigWig signal p-value ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF060DCN, ENCFF488PXJ 277684414 ENCODE Processing Pipeline 76f70db141920074f564e55668d43ea2 https://www.encodeproject.org/files/ENCFF405KEN/@@download/ENCFF405KEN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF902SQA bigWig signal p-value ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF060DCN, ENCFF488PXJ, ENCFF583MKP 515939863 ENCODE Processing Pipeline f46a9d7b933ca2c9521182491c04f0e4 https://www.encodeproject.org/files/ENCFF902SQA/@@download/ENCFF902SQA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF045QRH bigWig fold change over control ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF583MKP 497550807 ENCODE Processing Pipeline 22466a757e72686d2e9f8cf0b43560e8 https://www.encodeproject.org/files/ENCFF045QRH/@@download/ENCFF045QRH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF315XIW bigWig fold change over control ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF060DCN, ENCFF488PXJ 368608908 ENCODE Processing Pipeline 77780cb1ac45188c93b25c431a2a409d https://www.encodeproject.org/files/ENCFF315XIW/@@download/ENCFF315XIW.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF935NKI bigWig fold change over control ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF060DCN, ENCFF488PXJ, ENCFF583MKP 765437311 ENCODE Processing Pipeline bb52f79276d67772a9b3d4294864aba2 https://www.encodeproject.org/files/ENCFF935NKI/@@download/ENCFF935NKI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF686XPK bed narrowPeak replicated peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF313EJH, ENCFF476NRG, ENCFF738PMX 496134 ENCODE Processing Pipeline ad248bfea386724cc84d335744b9e678 https://www.encodeproject.org/files/ENCFF686XPK/@@download/ENCFF686XPK.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF847COR bigBed narrowPeak replicated peaks ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF686XPK 1153625 ENCODE Processing Pipeline 1662e01673022d91fdd50dd2d90f9d04 https://www.encodeproject.org/files/ENCFF847COR/@@download/ENCFF847COR.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002DRE fastq reads ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 36 single-ended 1771100148 Bing Ren, UCSD c4616c31de10a483672ac6f2614a22af SRA:SRR3653393 https://www.encodeproject.org/files/ENCFF002DRE/@@download/ENCFF002DRE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQP/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRF fastq reads ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 2 36 single-ended 1196336736 Bing Ren, UCSD 233385d5a952f3d7308ca8fa72be0421 SRA:SRR3653394 https://www.encodeproject.org/files/ENCFF002DRF/@@download/ENCFF002DRF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQN/ released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRG fastq reads ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 36 single-ended 1783239766 Bing Ren, UCSD ddb34770ecc19729a1f9a2890f49aac4 SRA:SRR3653395 https://www.encodeproject.org/files/ENCFF002DRG/@@download/ENCFF002DRG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQN/ released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF994QWH bam alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF002DRF, ENCFF002DRG, ENCFF806TVZ 1435972667 ENCODE Processing Pipeline 0f64d171225d135873b7a03f74864e96 https://www.encodeproject.org/files/ENCFF994QWH/@@download/ENCFF994QWH.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF467ELO bam alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF002DRE, ENCFF806TVZ 1008875653 ENCODE Processing Pipeline 107d1d569d90a2d1b2f68d444059e86e https://www.encodeproject.org/files/ENCFF467ELO/@@download/ENCFF467ELO.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF204LYE bed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF362MXD, ENCFF467ELO 348712 ENCODE Processing Pipeline 74d8f4aaadef7f8fc43760cc534860bd https://www.encodeproject.org/files/ENCFF204LYE/@@download/ENCFF204LYE.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF233BKR bed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF994QWH 645976 ENCODE Processing Pipeline ce7894fe1de693edb1248652adddd650 https://www.encodeproject.org/files/ENCFF233BKR/@@download/ENCFF233BKR.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF350MMP bigBed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF204LYE 754811 ENCODE Processing Pipeline 01a455afac301eb73eebaf23ab70c31b https://www.encodeproject.org/files/ENCFF350MMP/@@download/ENCFF350MMP.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF805KJC bigBed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF233BKR 1520872 ENCODE Processing Pipeline 6a19bf746951fef275b2ef1a443cd631 https://www.encodeproject.org/files/ENCFF805KJC/@@download/ENCFF805KJC.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF895WSR bigBed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF825PBQ 1080795 ENCODE Processing Pipeline 5158215dab7dd856254261924e46d654 https://www.encodeproject.org/files/ENCFF895WSR/@@download/ENCFF895WSR.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF825PBQ bed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF362MXD, ENCFF467ELO, ENCFF576KAS, ENCFF994QWH 431421 ENCODE Processing Pipeline b7655f03bd2de9badac39f43c7366be1 https://www.encodeproject.org/files/ENCFF825PBQ/@@download/ENCFF825PBQ.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF833JVG bigWig signal p-value ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF362MXD, ENCFF467ELO 357112863 ENCODE Processing Pipeline 5d60a1e0cc45db760f97f672e0cf0370 https://www.encodeproject.org/files/ENCFF833JVG/@@download/ENCFF833JVG.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF258LJB bigWig signal p-value ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF994QWH 560630329 ENCODE Processing Pipeline 00b09b64bda340a1b63e103a73a7b421 https://www.encodeproject.org/files/ENCFF258LJB/@@download/ENCFF258LJB.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF134EML bigWig signal p-value ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF362MXD, ENCFF467ELO, ENCFF576KAS, ENCFF994QWH 787533276 ENCODE Processing Pipeline 7680150fe3e1bae4763118df273b7c8d https://www.encodeproject.org/files/ENCFF134EML/@@download/ENCFF134EML.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF489JXG bigWig fold change over control ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF362MXD, ENCFF467ELO 411516121 ENCODE Processing Pipeline 4c73db0aece3b56aff52fc4f396d4c23 https://www.encodeproject.org/files/ENCFF489JXG/@@download/ENCFF489JXG.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF771ISN bigWig fold change over control ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF994QWH 600660480 ENCODE Processing Pipeline fc36ebcd77049f2ad9b8aeaec0d4dc97 https://www.encodeproject.org/files/ENCFF771ISN/@@download/ENCFF771ISN.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF979GAP bigBed narrowPeak replicated peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF871GPI 407128 ENCODE Processing Pipeline dd530f6e0c421f7ed9c071591912545c https://www.encodeproject.org/files/ENCFF979GAP/@@download/ENCFF979GAP.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF164ELE bigWig fold change over control ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF362MXD, ENCFF467ELO, ENCFF576KAS, ENCFF994QWH 898376069 ENCODE Processing Pipeline b20e653f32eb5e6cda251b0a5e463104 https://www.encodeproject.org/files/ENCFF164ELE/@@download/ENCFF164ELE.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF871GPI bed narrowPeak replicated peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF204LYE, ENCFF233BKR, ENCFF825PBQ 186691 ENCODE Processing Pipeline e64865591e40a165fda9542f0c273c2b https://www.encodeproject.org/files/ENCFF871GPI/@@download/ENCFF871GPI.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF038BWF bam unfiltered alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DRE, ENCFF018NEO 2217721642 ENCODE Processing Pipeline 3d27540f49c01691cd3d831858147956 https://www.encodeproject.org/files/ENCFF038BWF/@@download/ENCFF038BWF.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF608ZXS bam unfiltered alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DRF, ENCFF002DRG, ENCFF018NEO 3698293994 ENCODE Processing Pipeline b0b65804174b72d8d1210550effecdb9 https://www.encodeproject.org/files/ENCFF608ZXS/@@download/ENCFF608ZXS.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF225RAW bam alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DRE, ENCFF018NEO 1008225010 ENCODE Processing Pipeline 1e026ce5d38db657c2b38da10f6e8d37 https://www.encodeproject.org/files/ENCFF225RAW/@@download/ENCFF225RAW.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF160ZFG bam alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DRF, ENCFF002DRG, ENCFF018NEO 1435274058 ENCODE Processing Pipeline ce9d68a655965da7214051059f34f54f https://www.encodeproject.org/files/ENCFF160ZFG/@@download/ENCFF160ZFG.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF857FEO bed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF160ZFG, ENCFF304BRA 182170 ENCODE Processing Pipeline 652812a2e28f2076de69cb64c95fddb3 https://www.encodeproject.org/files/ENCFF857FEO/@@download/ENCFF857FEO.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF162HWU bigBed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF857FEO 436134 ENCODE Processing Pipeline b12a4eb979c1edd3138c51b8b40cf884 https://www.encodeproject.org/files/ENCFF162HWU/@@download/ENCFF162HWU.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF369YRZ bigBed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF711UPK 804615 ENCODE Processing Pipeline 7c1475efa56a96e2337b914538911180 https://www.encodeproject.org/files/ENCFF369YRZ/@@download/ENCFF369YRZ.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF501IZJ bed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF225RAW, ENCFF255MPO, ENCFF304BRA 420632 ENCODE Processing Pipeline 1ae3f90bc23ab884fc5200c28d3e3152 https://www.encodeproject.org/files/ENCFF501IZJ/@@download/ENCFF501IZJ.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF981DWJ bigWig signal p-value ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF225RAW, ENCFF255MPO, ENCFF304BRA 454754851 ENCODE Processing Pipeline bb1243146803da31d9ffae95bd9a0b26 https://www.encodeproject.org/files/ENCFF981DWJ/@@download/ENCFF981DWJ.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF699HYK bigWig signal p-value ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF160ZFG, ENCFF304BRA 393930556 ENCODE Processing Pipeline 62acdd9cc51d171045d1e71d0d9a4bdc https://www.encodeproject.org/files/ENCFF699HYK/@@download/ENCFF699HYK.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF711UPK bed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF160ZFG, ENCFF225RAW, ENCFF255MPO, ENCFF304BRA 305666 ENCODE Processing Pipeline 8e491a3a694608e87f6a3d85be664ec3 https://www.encodeproject.org/files/ENCFF711UPK/@@download/ENCFF711UPK.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF108WIR bigBed narrowPeak peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF501IZJ 865122 ENCODE Processing Pipeline 7a26f3f160a41a4a7b080aef949b238c https://www.encodeproject.org/files/ENCFF108WIR/@@download/ENCFF108WIR.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF739KEJ bigWig signal p-value ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF160ZFG, ENCFF225RAW, ENCFF255MPO, ENCFF304BRA 723268172 ENCODE Processing Pipeline 3fd7fc58f8edddf279a0bda970b50efc https://www.encodeproject.org/files/ENCFF739KEJ/@@download/ENCFF739KEJ.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF785LPP bigWig fold change over control ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF225RAW, ENCFF255MPO, ENCFF304BRA 483020876 ENCODE Processing Pipeline f43e1272b03089c403c6c328f31c1df1 https://www.encodeproject.org/files/ENCFF785LPP/@@download/ENCFF785LPP.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF958AND bigWig fold change over control ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF160ZFG, ENCFF304BRA 506583655 ENCODE Processing Pipeline 41f63a3bcbf0bdf664622aba12996986 https://www.encodeproject.org/files/ENCFF958AND/@@download/ENCFF958AND.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF862XOL bigBed narrowPeak replicated peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF740CQQ 391101 ENCODE Processing Pipeline 6cffe680cec9c02191c225940fba8422 https://www.encodeproject.org/files/ENCFF862XOL/@@download/ENCFF862XOL.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF740CQQ bed narrowPeak replicated peaks ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF501IZJ, ENCFF711UPK, ENCFF857FEO 177921 ENCODE Processing Pipeline 3b63cc40e4b0ba7fd4f65ed97a8e04b8 https://www.encodeproject.org/files/ENCFF740CQQ/@@download/ENCFF740CQQ.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF968CFU bigWig fold change over control ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF160ZFG, ENCFF225RAW, ENCFF255MPO, ENCFF304BRA 850513008 ENCODE Processing Pipeline e414cb6248c1b5f63081220f4a587878 https://www.encodeproject.org/files/ENCFF968CFU/@@download/ENCFF968CFU.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF001KOS bam alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KPG 351034470 Bing Ren, UCSD d10452c1e024cd19517ffcbdde115a14 https://www.encodeproject.org/files/ENCFF001KOS/@@download/ENCFF001KOS.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KOT bigBed broadPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XYF 2577194 Bing Ren, UCSD 5213ef3c184ce71cc88d93b544dcc03e https://www.encodeproject.org/files/ENCFF001KOT/@@download/ENCFF001KOT.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KOU bam alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KPE 300844760 Bing Ren, UCSD c7f9115cd2129655e66965d45cb1141f https://www.encodeproject.org/files/ENCFF001KOU/@@download/ENCFF001KOU.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KOW bigWig signal ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KOS, ENCFF001KOU 61337865 Bing Ren, UCSD 75c34e73d418d2bf5c21f048e499e388 https://www.encodeproject.org/files/ENCFF001KOW/@@download/ENCFF001KOW.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KPE fastq reads ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 618175613 Bing Ren, UCSD 0c3dbc2562341aedb9f170148cadcafe https://www.encodeproject.org/files/ENCFF001KPE/@@download/ENCFF001KPE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPS/ released low read length insufficient read depth, control insufficient read depth ENCFF001KPG fastq reads ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 811659231 Bing Ren, UCSD 7006e82fb89b97f4e8c8a51ce4b5b976 https://www.encodeproject.org/files/ENCFF001KPG/@@download/ENCFF001KPG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPR/ released low read length insufficient read depth, control insufficient read depth ENCFF001XYF bed broadPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KOS, ENCFF001KOU 1341385 Bing Ren, UCSD 6e405368115689f9d7c1bb51b43d21b0 https://www.encodeproject.org/files/ENCFF001XYF/@@download/ENCFF001XYF.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF508MZH bam unfiltered alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPE, ENCFF018NEO 664894088 ENCODE Processing Pipeline 5bde607f8198b0f4748d0f43145cbbc3 https://www.encodeproject.org/files/ENCFF508MZH/@@download/ENCFF508MZH.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF692WYL bam unfiltered alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPG, ENCFF018NEO 857720182 ENCODE Processing Pipeline a20e98be9e8edd6fae00d06a7678caeb https://www.encodeproject.org/files/ENCFF692WYL/@@download/ENCFF692WYL.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF099HKS bam alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPE, ENCFF018NEO 322224050 ENCODE Processing Pipeline b978a50a8ae2c58e0fb39a29604676c1 https://www.encodeproject.org/files/ENCFF099HKS/@@download/ENCFF099HKS.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF201IXE bam alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPG, ENCFF018NEO 338582592 ENCODE Processing Pipeline 1b682a0eca4377b9bec1479dd2714521 https://www.encodeproject.org/files/ENCFF201IXE/@@download/ENCFF201IXE.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF664ZWB bed narrowPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF099HKS, ENCFF545AEW 2001020 ENCODE Processing Pipeline 91695d7f856794669df249926620e4ec https://www.encodeproject.org/files/ENCFF664ZWB/@@download/ENCFF664ZWB.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF614SJV bed narrowPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF161DPJ, ENCFF201IXE 2493607 ENCODE Processing Pipeline 2f8e3b7592255ca095428fddf344e17f https://www.encodeproject.org/files/ENCFF614SJV/@@download/ENCFF614SJV.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF307DRI bigBed narrowPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF614SJV 5927282 ENCODE Processing Pipeline fe084c7f11576f6ebc6349082ad43f35 https://www.encodeproject.org/files/ENCFF307DRI/@@download/ENCFF307DRI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF374JRB bed narrowPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF099HKS, ENCFF161DPJ, ENCFF201IXE, ENCFF545AEW 3104290 ENCODE Processing Pipeline fd40f17eee3e1a59326bf7ff2b137cb7 https://www.encodeproject.org/files/ENCFF374JRB/@@download/ENCFF374JRB.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF592HMA bigWig signal p-value ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF161DPJ, ENCFF201IXE 291647638 ENCODE Processing Pipeline d7a881fedccd621135552243fca00898 https://www.encodeproject.org/files/ENCFF592HMA/@@download/ENCFF592HMA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF586PVX bigBed narrowPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF664ZWB 5024589 ENCODE Processing Pipeline 651cedca7c3550bb3b075eecb8f2df7e https://www.encodeproject.org/files/ENCFF586PVX/@@download/ENCFF586PVX.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF704DZH bigBed narrowPeak peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF374JRB 9026326 ENCODE Processing Pipeline cd607324159ef534af8c67c5a49d33a6 https://www.encodeproject.org/files/ENCFF704DZH/@@download/ENCFF704DZH.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF635BGU bigWig signal p-value ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF099HKS, ENCFF545AEW 293752919 ENCODE Processing Pipeline 929a41a60cf01fc20127f8f8b2cb4ee5 https://www.encodeproject.org/files/ENCFF635BGU/@@download/ENCFF635BGU.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF080PIR bigWig signal p-value ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF099HKS, ENCFF161DPJ, ENCFF201IXE, ENCFF545AEW 563971953 ENCODE Processing Pipeline aba215e56582ec7056bc09cecea5ad18 https://www.encodeproject.org/files/ENCFF080PIR/@@download/ENCFF080PIR.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF189TZP bigWig fold change over control ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF161DPJ, ENCFF201IXE 164479929 ENCODE Processing Pipeline a0742a83819eb6e5ebc77b4b47a44632 https://www.encodeproject.org/files/ENCFF189TZP/@@download/ENCFF189TZP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF664VJL bigWig fold change over control ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF099HKS, ENCFF545AEW 164252718 ENCODE Processing Pipeline 2ad142c06361a48491178b42d4606a63 https://www.encodeproject.org/files/ENCFF664VJL/@@download/ENCFF664VJL.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF353PNU bigWig fold change over control ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF099HKS, ENCFF161DPJ, ENCFF201IXE, ENCFF545AEW 380929699 ENCODE Processing Pipeline 206021f583e3c51a430a4114c51d6cc9 https://www.encodeproject.org/files/ENCFF353PNU/@@download/ENCFF353PNU.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF269WQA bed narrowPeak replicated peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF374JRB, ENCFF614SJV, ENCFF664ZWB 1913841 ENCODE Processing Pipeline 122fa7878d7f16e5b6446b7517aa005e https://www.encodeproject.org/files/ENCFF269WQA/@@download/ENCFF269WQA.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF483SAC bigBed narrowPeak replicated peaks ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF269WQA 4443507 ENCODE Processing Pipeline fe806c96685b9c8193efaa6131b89d8a https://www.encodeproject.org/files/ENCFF483SAC/@@download/ENCFF483SAC.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF172HFY fastq reads ENCSR993MMD ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1158268419 Richard Myers, HAIB 55d439cad3d275e82eb78ec322ba3a31 SRA:SRR5112368 https://www.encodeproject.org/files/ENCFF172HFY/@@download/ENCFF172HFY.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF604KPS bam alignments ENCSR993MMD ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF172HFY 990061171 ENCODE Processing Pipeline 13b44f54e84df47913a281f29376e04f https://www.encodeproject.org/files/ENCFF604KPS/@@download/ENCFF604KPS.bam mm10 released insufficient read depth for broad peaks control ENCFF457YDD bam unfiltered alignments ENCSR993MMD ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF172HFY 1287047015 ENCODE Processing Pipeline 8db89efa895ba4848c35372c1d335c9b https://www.encodeproject.org/files/ENCFF457YDD/@@download/ENCFF457YDD.bam mm10 released insufficient read depth for broad peaks control ENCFF001KJT bam alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KKE 249685015 Bing Ren, UCSD 8ba73c5e55a4ce67bd267923e06ff357 https://www.encodeproject.org/files/ENCFF001KJT/@@download/ENCFF001KJT.bam mm9 released low read length, low read depth extremely low read depth ENCFF001KJW bam alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KKF 714596014 Bing Ren, UCSD f5ab511de3994755b4483281c886b2e0 https://www.encodeproject.org/files/ENCFF001KJW/@@download/ENCFF001KJW.bam mm9 released low read length, low read depth extremely low read depth ENCFF001KJX bigWig signal ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001KJT, ENCFF001KJW 66423319 Bing Ren, UCSD fe038f88331af567cb3ccf455a760d62 https://www.encodeproject.org/files/ENCFF001KJX/@@download/ENCFF001KJX.bigWig mm9 released low read length, low read depth extremely low read depth ENCFF001KKE fastq reads ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 937215362 Bing Ren, UCSD 5eb19b262cb54b7a3330b6c77a094776 https://www.encodeproject.org/files/ENCFF001KKE/@@download/ENCFF001KKE.fastq.gz Illumina Genome Analyzer II released low read length, low read depth extremely low read depth ENCFF001KKF fastq reads ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 788764755 Bing Ren, UCSD 6b61cba3c2051eaeee54db4c3516f294 https://www.encodeproject.org/files/ENCFF001KKF/@@download/ENCFF001KKF.fastq.gz Illumina Genome Analyzer II released low read length, low read depth extremely low read depth ENCFF238YZX bam unfiltered alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KKE, ENCFF806TVZ 982545277 J. Michael Cherry, Stanford dccb0602bbe717a7f43d2b30fbdc10bb https://www.encodeproject.org/files/ENCFF238YZX/@@download/ENCFF238YZX.bam mm10-minimal archived low read length, low read depth extremely low read depth ENCFF915IJO bam unfiltered alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KKF, ENCFF806TVZ 922238060 J. Michael Cherry, Stanford 5408add6b3e200b77b106eaa5e9d78db https://www.encodeproject.org/files/ENCFF915IJO/@@download/ENCFF915IJO.bam mm10-minimal archived low read length, low read depth extremely low read depth ENCFF862XUW bam alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KKE, ENCFF018NEO 273247827 ENCODE Processing Pipeline dd8c96a0d14db48bb9fa2fbc2bf50be1 https://www.encodeproject.org/files/ENCFF862XUW/@@download/ENCFF862XUW.bam mm10 released low read length, low read depth extremely low read depth ENCFF396FNQ bam alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KKF, ENCFF018NEO 606097430 ENCODE Processing Pipeline bb3f94b827676d7fbfd24ef51636b121 https://www.encodeproject.org/files/ENCFF396FNQ/@@download/ENCFF396FNQ.bam mm10 released low read length, low read depth extremely low read depth ENCFF168ECW bam unfiltered alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KKE, ENCFF018NEO 983576076 ENCODE Processing Pipeline c5adde43f6f7d91068d74c9e02d93cca https://www.encodeproject.org/files/ENCFF168ECW/@@download/ENCFF168ECW.bam mm10 released low read length, low read depth extremely low read depth ENCFF028SNW bam unfiltered alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KKF, ENCFF018NEO 922809992 ENCODE Processing Pipeline 2ef609fb1f6b4b568ee1b318e97d68cc https://www.encodeproject.org/files/ENCFF028SNW/@@download/ENCFF028SNW.bam mm10 released low read length, low read depth extremely low read depth ENCFF002AGA fastq reads ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1410182412 Bing Ren, UCSD d8c6b05264f39bb3e14bc3d7a2e5af26 SRA:SRR3653331 https://www.encodeproject.org/files/ENCFF002AGA/@@download/ENCFF002AGA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APW/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AGC fastq reads ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1511144758 Bing Ren, UCSD 838069f75f47bc293be972a9ac247623 SRA:SRR3653332 https://www.encodeproject.org/files/ENCFF002AGC/@@download/ENCFF002AGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF494TAS bam alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGA, ENCFF806TVZ 1032228270 ENCODE Processing Pipeline 10ff8bd14d3f434a9a74b5b8a8c8d8e7 https://www.encodeproject.org/files/ENCFF494TAS/@@download/ENCFF494TAS.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF203TXU fastq reads ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 595324238 Bing Ren, UCSD 3b91b1968092eb953031b04b874b0728 SRA:SRR3653333 https://www.encodeproject.org/files/ENCFF203TXU/@@download/ENCFF203TXU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002NBI bam alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGC, ENCFF203TXU, ENCFF806TVZ 1237192479 ENCODE Processing Pipeline 518dee28702965b11b929e0d0016fb79 https://www.encodeproject.org/files/ENCFF002NBI/@@download/ENCFF002NBI.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF945OIL bed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002NBI, ENCFF417WKH 970983 ENCODE Processing Pipeline bfde7105fb8a75280c22d54e77e5be64 https://www.encodeproject.org/files/ENCFF945OIL/@@download/ENCFF945OIL.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF097QBY bigBed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF945OIL 2079230 ENCODE Processing Pipeline 68cab75c524a7405ebfccde4035bde05 https://www.encodeproject.org/files/ENCFF097QBY/@@download/ENCFF097QBY.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF272PQR bigBed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF336XES 3199214 ENCODE Processing Pipeline 0ec98e75a4bb11e6c49ab36608a48a56 https://www.encodeproject.org/files/ENCFF272PQR/@@download/ENCFF272PQR.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF909ATS bed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF494TAS, ENCFF716BBX 806186 ENCODE Processing Pipeline 4d3de774c41388bf7b8cd03f170c22a7 https://www.encodeproject.org/files/ENCFF909ATS/@@download/ENCFF909ATS.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF144HFW bigWig signal p-value ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002NBI, ENCFF417WKH 368050264 ENCODE Processing Pipeline 34f1695dd58fb3f6a202baa8fa47b39b https://www.encodeproject.org/files/ENCFF144HFW/@@download/ENCFF144HFW.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF336XES bed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF002NBI, ENCFF417WKH, ENCFF494TAS, ENCFF716BBX 1234548 ENCODE Processing Pipeline 469b8c37edd4dff9f0828cf9d8053d06 https://www.encodeproject.org/files/ENCFF336XES/@@download/ENCFF336XES.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF831HSD bigWig signal p-value ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF002NBI, ENCFF417WKH, ENCFF494TAS, ENCFF716BBX 890557559 ENCODE Processing Pipeline 8742ca10066b6bd55d95174cb0af22ff https://www.encodeproject.org/files/ENCFF831HSD/@@download/ENCFF831HSD.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF899MRH bigWig fold change over control ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002NBI, ENCFF417WKH 473370061 ENCODE Processing Pipeline 18b1c03ffd8e33314fec5ff354f370a0 https://www.encodeproject.org/files/ENCFF899MRH/@@download/ENCFF899MRH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF990QBR bigWig fold change over control ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF002NBI, ENCFF417WKH, ENCFF494TAS, ENCFF716BBX 943781250 ENCODE Processing Pipeline b7a5adc82d3827663009210a31abe391 https://www.encodeproject.org/files/ENCFF990QBR/@@download/ENCFF990QBR.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF151RUC bed narrowPeak replicated peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF336XES, ENCFF909ATS, ENCFF945OIL 507882 ENCODE Processing Pipeline 12ca447acd3b573516e4f601c23f926b https://www.encodeproject.org/files/ENCFF151RUC/@@download/ENCFF151RUC.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF702MOU bigBed narrowPeak replicated peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF151RUC 1129953 ENCODE Processing Pipeline 95e8a49c60f11b6b5dd8e89d4e844a37 https://www.encodeproject.org/files/ENCFF702MOU/@@download/ENCFF702MOU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF266EXT bam unfiltered alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGA, ENCFF018NEO 1535277810 ENCODE Processing Pipeline 36a1b1ad8907022372bc04955583b968 https://www.encodeproject.org/files/ENCFF266EXT/@@download/ENCFF266EXT.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF614BCO bam unfiltered alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGC, ENCFF018NEO, ENCFF203TXU 2121382118 ENCODE Processing Pipeline 8b878cf1d1ffa979e88143f5df65325a https://www.encodeproject.org/files/ENCFF614BCO/@@download/ENCFF614BCO.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF539VSP bam alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGA, ENCFF018NEO 1032007611 ENCODE Processing Pipeline 805c04e84cb12ac902c52ceff8f26135 https://www.encodeproject.org/files/ENCFF539VSP/@@download/ENCFF539VSP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF572CFF bam alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGC, ENCFF018NEO, ENCFF203TXU 1126300284 ENCODE Processing Pipeline ff10bfdad5796225a57812184062e0b2 https://www.encodeproject.org/files/ENCFF572CFF/@@download/ENCFF572CFF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF070YYE bigBed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF093CZM 1742203 ENCODE Processing Pipeline 2f184f5d4e537f0ace3cf419feec53ed https://www.encodeproject.org/files/ENCFF070YYE/@@download/ENCFF070YYE.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF093CZM bed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF504TWB, ENCFF539VSP 792554 ENCODE Processing Pipeline 416ccf0ee45c8203790c05142ac4ffff https://www.encodeproject.org/files/ENCFF093CZM/@@download/ENCFF093CZM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF194ZPV bed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF572CFF, ENCFF963FIQ 938970 ENCODE Processing Pipeline 1901ce92fb944ae5f699a3438aa3d608 https://www.encodeproject.org/files/ENCFF194ZPV/@@download/ENCFF194ZPV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF816BGQ bigBed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462NOZ 3090000 ENCODE Processing Pipeline 4653478b1ff2a69487d14803d32a5a5a https://www.encodeproject.org/files/ENCFF816BGQ/@@download/ENCFF816BGQ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF462NOZ bed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF504TWB, ENCFF539VSP, ENCFF572CFF, ENCFF963FIQ 1187368 ENCODE Processing Pipeline 52f3de470071550263884ed07dfeab26 https://www.encodeproject.org/files/ENCFF462NOZ/@@download/ENCFF462NOZ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF626ZRN bigBed narrowPeak peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF194ZPV 2033452 ENCODE Processing Pipeline 70e453a533126cd7ce26215c87e17ad1 https://www.encodeproject.org/files/ENCFF626ZRN/@@download/ENCFF626ZRN.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF522VPV bigWig signal p-value ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF504TWB, ENCFF539VSP 452191014 ENCODE Processing Pipeline 0fd36e1124954f308b63e3a7d3528239 https://www.encodeproject.org/files/ENCFF522VPV/@@download/ENCFF522VPV.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF785NLU bigWig signal p-value ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF572CFF, ENCFF963FIQ 467558147 ENCODE Processing Pipeline 945d89249d3f9031f737a9bdbc00bd7f https://www.encodeproject.org/files/ENCFF785NLU/@@download/ENCFF785NLU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF296HAW bigWig signal p-value ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF504TWB, ENCFF539VSP, ENCFF572CFF, ENCFF963FIQ 927053417 ENCODE Processing Pipeline ace3f99d29839aa1786a8ddb10fa5f17 https://www.encodeproject.org/files/ENCFF296HAW/@@download/ENCFF296HAW.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF294TFT bigWig fold change over control ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF504TWB, ENCFF539VSP 467689771 ENCODE Processing Pipeline e0047d13a8b09d7d19f4d949c95e484f https://www.encodeproject.org/files/ENCFF294TFT/@@download/ENCFF294TFT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF543GWW bigWig fold change over control ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF572CFF, ENCFF963FIQ 509570144 ENCODE Processing Pipeline 51f0a3a125d12ca7d384e53753e7d5a3 https://www.encodeproject.org/files/ENCFF543GWW/@@download/ENCFF543GWW.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF787DNX bigWig fold change over control ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF504TWB, ENCFF539VSP, ENCFF572CFF, ENCFF963FIQ 946730928 ENCODE Processing Pipeline c2eea5a7aed0c747d814653cd8188076 https://www.encodeproject.org/files/ENCFF787DNX/@@download/ENCFF787DNX.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF658ZBC bed narrowPeak replicated peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF093CZM, ENCFF194ZPV, ENCFF462NOZ 515118 ENCODE Processing Pipeline babf0260e32e3b0ac026807521490f9a https://www.encodeproject.org/files/ENCFF658ZBC/@@download/ENCFF658ZBC.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF584ZTN bigBed narrowPeak replicated peaks ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF658ZBC 1133125 ENCODE Processing Pipeline 095d568dc3812678eb16fa3e5f9cbdae https://www.encodeproject.org/files/ENCFF584ZTN/@@download/ENCFF584ZTN.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF764CBH fastq reads ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2729770164 Bing Ren, UCSD f6876a28f4deafcefbea2e9334c06c0f SRA:SRR3651649 https://www.encodeproject.org/files/ENCFF764CBH/@@download/ENCFF764CBH.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF272FYH fastq reads ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 317201282 Bing Ren, UCSD a39fae52284a368871e9ce61aa850e16 SRA:SRR3651652 https://www.encodeproject.org/files/ENCFF272FYH/@@download/ENCFF272FYH.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF880ZJK fastq reads ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2169338183 Bing Ren, UCSD 0669c1ea755d051bc6c030f22be52e12 SRA:SRR3651653 https://www.encodeproject.org/files/ENCFF880ZJK/@@download/ENCFF880ZJK.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF711NEU bam alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF272FYH, ENCFF806TVZ, ENCFF880ZJK 2095882241 ENCODE Processing Pipeline eae1650c38f477fc45606075ff3b3b4e https://www.encodeproject.org/files/ENCFF711NEU/@@download/ENCFF711NEU.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF236JLN bam alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF764CBH, ENCFF806TVZ 2232650507 ENCODE Processing Pipeline 6bff12c79bd4970bce548588a99e8991 https://www.encodeproject.org/files/ENCFF236JLN/@@download/ENCFF236JLN.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF410JAO fastq reads ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 487045535 Bing Ren, UCSD 612df9967d8d1cc81b2b1aad016e3cd9 SRA:SRR3651654 https://www.encodeproject.org/files/ENCFF410JAO/@@download/ENCFF410JAO.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF766DAD fastq reads ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 875226560 Bing Ren, UCSD fdce7c02f82ab66f8c95b3d49f27179f SRA:SRR3651650 https://www.encodeproject.org/files/ENCFF766DAD/@@download/ENCFF766DAD.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF222ZUV fastq reads ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 261066483 Bing Ren, UCSD c182a5d1ef7208e000439804ac400930 SRA:SRR3651651 https://www.encodeproject.org/files/ENCFF222ZUV/@@download/ENCFF222ZUV.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF150TEC bam unfiltered alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF272FYH, ENCFF410JAO, ENCFF880ZJK 3785385371 ENCODE Processing Pipeline 1ca9486fd694a712380a966588c0eb9d https://www.encodeproject.org/files/ENCFF150TEC/@@download/ENCFF150TEC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF902WWW bam unfiltered alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF222ZUV, ENCFF764CBH, ENCFF766DAD 4972009667 ENCODE Processing Pipeline e605d68a7035d4acc2f48e87fc58a9a7 https://www.encodeproject.org/files/ENCFF902WWW/@@download/ENCFF902WWW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF125FAE bam alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF272FYH, ENCFF410JAO, ENCFF880ZJK 2609734979 ENCODE Processing Pipeline 5084e3d7885e8c8128f8b9ca99fe278a https://www.encodeproject.org/files/ENCFF125FAE/@@download/ENCFF125FAE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF580YCN bam alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF222ZUV, ENCFF764CBH, ENCFF766DAD 3375406725 ENCODE Processing Pipeline 0e55571e78f30a4e8b7f8d3e0fc679e8 https://www.encodeproject.org/files/ENCFF580YCN/@@download/ENCFF580YCN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AHP fastq reads ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1445481015 Bing Ren, UCSD 156f2ada7ac835f7450d9144c1d44753 SRA:SRR3651600 https://www.encodeproject.org/files/ENCFF002AHP/@@download/ENCFF002AHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF002AHQ fastq reads ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1348097401 Bing Ren, UCSD 941e02c1a3385a38564e462b46f1f712 SRA:SRR3651599 https://www.encodeproject.org/files/ENCFF002AHQ/@@download/ENCFF002AHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF474NQB bam alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHQ, ENCFF806TVZ 1064512364 ENCODE Processing Pipeline 97e2c7c8d8f2c60d1d2ffd2feea8c7f2 https://www.encodeproject.org/files/ENCFF474NQB/@@download/ENCFF474NQB.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF413IVC bam alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHP, ENCFF806TVZ 1143765550 ENCODE Processing Pipeline b247efb114a1bead8467266b48f0e8f8 https://www.encodeproject.org/files/ENCFF413IVC/@@download/ENCFF413IVC.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF462VPV bed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF413IVC, ENCFF474NQB, ENCFF528CCC 2543596 ENCODE Processing Pipeline 9b4078aaae8754a946ce9b561c767c78 https://www.encodeproject.org/files/ENCFF462VPV/@@download/ENCFF462VPV.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF899WRQ bed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF474NQB, ENCFF528CCC 2749902 ENCODE Processing Pipeline 71ce57f137001c7abab8f146e92e014e https://www.encodeproject.org/files/ENCFF899WRQ/@@download/ENCFF899WRQ.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF551BAP bigBed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462VPV 5382586 ENCODE Processing Pipeline 4e44163e287f058f88d99cd547eaf8f0 https://www.encodeproject.org/files/ENCFF551BAP/@@download/ENCFF551BAP.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF130IDK bed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF413IVC, ENCFF528CCC 2483345 ENCODE Processing Pipeline dbec9dac020656d1d92b846e349a5c8a https://www.encodeproject.org/files/ENCFF130IDK/@@download/ENCFF130IDK.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF637KGQ bigBed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF899WRQ 5848481 ENCODE Processing Pipeline 91393c300e29b47664ae4b138f0291d3 https://www.encodeproject.org/files/ENCFF637KGQ/@@download/ENCFF637KGQ.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF629XHZ bigBed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130IDK 5325800 ENCODE Processing Pipeline 36b35f0d4d06b4f2583abcc36a7ae449 https://www.encodeproject.org/files/ENCFF629XHZ/@@download/ENCFF629XHZ.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF431EBX bigWig signal p-value ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF413IVC, ENCFF528CCC 483740653 ENCODE Processing Pipeline 1835b50489100890305602c1bd541f76 https://www.encodeproject.org/files/ENCFF431EBX/@@download/ENCFF431EBX.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF960WFV bigWig signal p-value ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF474NQB, ENCFF528CCC 469483553 ENCODE Processing Pipeline fd9a9593f67ac7370451bf7f3cf6dfc9 https://www.encodeproject.org/files/ENCFF960WFV/@@download/ENCFF960WFV.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF016YYH bigWig signal p-value ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF413IVC, ENCFF474NQB, ENCFF528CCC 730687104 ENCODE Processing Pipeline 1f7ec42c1ae25dee93b0e959bd2d6210 https://www.encodeproject.org/files/ENCFF016YYH/@@download/ENCFF016YYH.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF013YQT bigWig fold change over control ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF413IVC, ENCFF528CCC 518707806 ENCODE Processing Pipeline 8bf65c6021a1a0909cb48e56b12e5276 https://www.encodeproject.org/files/ENCFF013YQT/@@download/ENCFF013YQT.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF526WRJ bigWig fold change over control ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF474NQB, ENCFF528CCC 518501480 ENCODE Processing Pipeline 2c3dd80e48793fcde4872d1b247fcead https://www.encodeproject.org/files/ENCFF526WRJ/@@download/ENCFF526WRJ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF032CXJ bigWig fold change over control ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF413IVC, ENCFF474NQB, ENCFF528CCC 840356009 ENCODE Processing Pipeline e6a7a35a9f394b81abdb6d1923c54753 https://www.encodeproject.org/files/ENCFF032CXJ/@@download/ENCFF032CXJ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF458PDL bed narrowPeak replicated peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130IDK, ENCFF462VPV, ENCFF899WRQ 2234106 ENCODE Processing Pipeline 991c283b2ccfc6b14c0b2001712ead9c https://www.encodeproject.org/files/ENCFF458PDL/@@download/ENCFF458PDL.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF344PBE bigBed narrowPeak replicated peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF458PDL 3954113 ENCODE Processing Pipeline d48ce3f2ef4e186f90ef7f2a613aadfd https://www.encodeproject.org/files/ENCFF344PBE/@@download/ENCFF344PBE.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF873JOY bam unfiltered alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHQ, ENCFF018NEO 1534897593 ENCODE Processing Pipeline f6e1323e47dc600a1794abcb5861ff6c https://www.encodeproject.org/files/ENCFF873JOY/@@download/ENCFF873JOY.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF715CSG bam unfiltered alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHP, ENCFF018NEO 1665865001 ENCODE Processing Pipeline 470e95d9bc00b642d2314a13892a40cb https://www.encodeproject.org/files/ENCFF715CSG/@@download/ENCFF715CSG.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF815MRR bam alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHP, ENCFF018NEO 1143467576 ENCODE Processing Pipeline 159639ad676080a2ecd22ee624bed065 https://www.encodeproject.org/files/ENCFF815MRR/@@download/ENCFF815MRR.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF851MHM bam alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHQ, ENCFF018NEO 1064276749 ENCODE Processing Pipeline f016c85453e255e3ccd21fa32bb7087f https://www.encodeproject.org/files/ENCFF851MHM/@@download/ENCFF851MHM.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF883ZWZ bed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF815MRR 2462667 ENCODE Processing Pipeline fbcb677d07f55532be737a1a6e5cabcb https://www.encodeproject.org/files/ENCFF883ZWZ/@@download/ENCFF883ZWZ.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF307OSK bed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF851MHM 2064113 ENCODE Processing Pipeline a66fe3e6c8122c848ce9b5fafb6c7257 https://www.encodeproject.org/files/ENCFF307OSK/@@download/ENCFF307OSK.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF887NGM bed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF815MRR, ENCFF851MHM 2207250 ENCODE Processing Pipeline 7639c18bbdb1a5939eec3c4982e7ff33 https://www.encodeproject.org/files/ENCFF887NGM/@@download/ENCFF887NGM.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF400AFY bigBed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF883ZWZ 5257333 ENCODE Processing Pipeline ad59a7be3e78b4ea6ebd0531d161cee4 https://www.encodeproject.org/files/ENCFF400AFY/@@download/ENCFF400AFY.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF869DSI bigBed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF307OSK 4474641 ENCODE Processing Pipeline 961bd8c4d0ef39c59fb1f80bfb60a7ae https://www.encodeproject.org/files/ENCFF869DSI/@@download/ENCFF869DSI.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF380XSJ bigBed narrowPeak peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF887NGM 4667456 ENCODE Processing Pipeline 798bc10266b647cdec6afc2d37fd73ef https://www.encodeproject.org/files/ENCFF380XSJ/@@download/ENCFF380XSJ.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF206WNX bigWig signal p-value ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF815MRR 561929616 ENCODE Processing Pipeline e62c5ac849fb8035bf514a052e639d0e https://www.encodeproject.org/files/ENCFF206WNX/@@download/ENCFF206WNX.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF836LWO bigWig signal p-value ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF851MHM 379284815 ENCODE Processing Pipeline 97ade1bf4fcc0dfb000f6a7ea7c19b89 https://www.encodeproject.org/files/ENCFF836LWO/@@download/ENCFF836LWO.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF806NPR bigWig signal p-value ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF815MRR, ENCFF851MHM 690639144 ENCODE Processing Pipeline fcefd496217b357bfa19800023021d92 https://www.encodeproject.org/files/ENCFF806NPR/@@download/ENCFF806NPR.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF764IQY bigWig fold change over control ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF815MRR 516890483 ENCODE Processing Pipeline fe3274cc475678834fd1e7ee639b80cc https://www.encodeproject.org/files/ENCFF764IQY/@@download/ENCFF764IQY.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF025CNO bigWig fold change over control ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF851MHM 417663833 ENCODE Processing Pipeline 6bf9999348805bf4d740184f3d6703e9 https://www.encodeproject.org/files/ENCFF025CNO/@@download/ENCFF025CNO.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF563GBE bigWig fold change over control ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF815MRR, ENCFF851MHM 808681454 ENCODE Processing Pipeline dc04aa1c4379f4f062c5d873242a4a03 https://www.encodeproject.org/files/ENCFF563GBE/@@download/ENCFF563GBE.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF913TLX bed narrowPeak replicated peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF307OSK, ENCFF883ZWZ, ENCFF887NGM 2051615 ENCODE Processing Pipeline 798cf9bfdadc8845834575ee926f6f52 https://www.encodeproject.org/files/ENCFF913TLX/@@download/ENCFF913TLX.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF202LKB bigBed narrowPeak replicated peaks ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF913TLX 3640054 ENCODE Processing Pipeline c996fb85b4ac267cf3abacb3a9aa3fa4 https://www.encodeproject.org/files/ENCFF202LKB/@@download/ENCFF202LKB.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF184PEP fastq reads ENCSR264HIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1166595914 Richard Myers, HAIB f2bb43a8c0a205e0c2c6acb5c2d3f786 SRA:SRR5111349 https://www.encodeproject.org/files/ENCFF184PEP/@@download/ENCFF184PEP.fastq.gz Illumina HiSeq 2000 released low read depth ENCFF461UIL bam unfiltered alignments ENCSR264HIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF184PEP 1264231054 ENCODE Processing Pipeline 883cba7a8c46c2c78d270a511caa1b9f https://www.encodeproject.org/files/ENCFF461UIL/@@download/ENCFF461UIL.bam mm10 released low read depth ENCFF135EEH bam alignments ENCSR264HIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF184PEP 973677261 ENCODE Processing Pipeline 6c9cf1f938e5bf77ec4beb1ef6c78777 https://www.encodeproject.org/files/ENCFF135EEH/@@download/ENCFF135EEH.bam mm10 released low read depth ENCFF002ALB fastq reads ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1569894989 Bing Ren, UCSD 0d96b223bdfa4b0ab87b4838493d7cc0 SRA:SRR3653263 https://www.encodeproject.org/files/ENCFF002ALB/@@download/ENCFF002ALB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQJ/ released mild to moderate bottlenecking, inconsistent control read length ENCFF002ALG fastq reads ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1798764698 Bing Ren, UCSD f6ef1dbb6f602859f6b85c3e5f9d1101 SRA:SRR3653262 https://www.encodeproject.org/files/ENCFF002ALG/@@download/ENCFF002ALG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQI/ released mild to moderate bottlenecking, inconsistent control read length ENCFF161ZAY bam alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALB, ENCFF806TVZ 1238395118 ENCODE Processing Pipeline bab8a5b9343b9aa2a71ebdd89900fbf1 https://www.encodeproject.org/files/ENCFF161ZAY/@@download/ENCFF161ZAY.bam mm10-minimal archived mild to moderate bottlenecking ENCFF953USK bam alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALG, ENCFF806TVZ 1371298339 ENCODE Processing Pipeline 5154a6dc3839e0a700972def376a4193 https://www.encodeproject.org/files/ENCFF953USK/@@download/ENCFF953USK.bam mm10-minimal archived mild to moderate bottlenecking ENCFF344CXD bed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF161ZAY, ENCFF271DZZ, ENCFF991ANF 847332 ENCODE Processing Pipeline b7f6f795e9c1fdae609785468dca0922 https://www.encodeproject.org/files/ENCFF344CXD/@@download/ENCFF344CXD.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF835FPA bed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF953USK, ENCFF991ANF 928635 ENCODE Processing Pipeline 235e08a6619f1bf6e6eb0a5c9d9e8dd1 https://www.encodeproject.org/files/ENCFF835FPA/@@download/ENCFF835FPA.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF333JBF bed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF161ZAY, ENCFF271DZZ, ENCFF953USK, ENCFF991ANF 895014 ENCODE Processing Pipeline 6d269722f07dcaecbc306184b39a208a https://www.encodeproject.org/files/ENCFF333JBF/@@download/ENCFF333JBF.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF794QZB bigWig signal p-value ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF161ZAY, ENCFF271DZZ, ENCFF991ANF 489538444 ENCODE Processing Pipeline ebd55dbca250ba843fa2b5eee0a18acd https://www.encodeproject.org/files/ENCFF794QZB/@@download/ENCFF794QZB.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF068FTA bigBed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF344CXD 2645771 ENCODE Processing Pipeline 613b25e99318c828811221af1fffaf56 https://www.encodeproject.org/files/ENCFF068FTA/@@download/ENCFF068FTA.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF892OAK bigBed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF835FPA 2891505 ENCODE Processing Pipeline e2aeb5690e567455fec9e25146f0df30 https://www.encodeproject.org/files/ENCFF892OAK/@@download/ENCFF892OAK.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF892SRH bigBed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF333JBF 2778491 ENCODE Processing Pipeline 36e7f49dd8d2dce0049c6c08be75e239 https://www.encodeproject.org/files/ENCFF892SRH/@@download/ENCFF892SRH.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF060AYH bigWig signal p-value ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF953USK, ENCFF991ANF 448111105 ENCODE Processing Pipeline 6c75303a04945c66164e09e99884d6ef https://www.encodeproject.org/files/ENCFF060AYH/@@download/ENCFF060AYH.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF269MNS bigWig signal p-value ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF161ZAY, ENCFF271DZZ, ENCFF953USK, ENCFF991ANF 673549991 ENCODE Processing Pipeline 55a30616063a73afb34f91080d640122 https://www.encodeproject.org/files/ENCFF269MNS/@@download/ENCFF269MNS.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF701EUO bigWig fold change over control ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF161ZAY, ENCFF271DZZ, ENCFF991ANF 465032556 ENCODE Processing Pipeline 475dd820870fc83c4f4da1226ff5a52a https://www.encodeproject.org/files/ENCFF701EUO/@@download/ENCFF701EUO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF519VHS bigWig fold change over control ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF953USK, ENCFF991ANF 501615453 ENCODE Processing Pipeline 42e10dfc14f32faf1dcc95d5511b9fc3 https://www.encodeproject.org/files/ENCFF519VHS/@@download/ENCFF519VHS.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF752LOM bigWig fold change over control ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF161ZAY, ENCFF271DZZ, ENCFF953USK, ENCFF991ANF 775666870 ENCODE Processing Pipeline 1211593e432dcd615a2447f4ce11326d https://www.encodeproject.org/files/ENCFF752LOM/@@download/ENCFF752LOM.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF397DYI bigBed narrowPeak replicated peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF409JVD 2458796 ENCODE Processing Pipeline 0773bc90c361d1f9017e8ab73ed4b991 https://www.encodeproject.org/files/ENCFF397DYI/@@download/ENCFF397DYI.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF409JVD bed narrowPeak replicated peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF333JBF, ENCFF344CXD, ENCFF835FPA 1082637 ENCODE Processing Pipeline 9c4a463d47326fc07c005eec589f683a https://www.encodeproject.org/files/ENCFF409JVD/@@download/ENCFF409JVD.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF355NIR bam alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALB, ENCFF018NEO 969244375 ENCODE Processing Pipeline 36bf3fd1bda1af8faf71b059817c2001 https://www.encodeproject.org/files/ENCFF355NIR/@@download/ENCFF355NIR.bam mm10 released mild to moderate bottlenecking ENCFF938AEZ bam unfiltered alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALG, ENCFF018NEO 1490912469 ENCODE Processing Pipeline 1125576f231209e9612448e48dbd37e1 https://www.encodeproject.org/files/ENCFF938AEZ/@@download/ENCFF938AEZ.bam mm10 released mild to moderate bottlenecking ENCFF114IUL bam unfiltered alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALB, ENCFF018NEO 1371599815 ENCODE Processing Pipeline 53435139b68901fbf675bed0a6c3b222 https://www.encodeproject.org/files/ENCFF114IUL/@@download/ENCFF114IUL.bam mm10 released mild to moderate bottlenecking ENCFF708OEB bam alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALG, ENCFF018NEO 1086348643 ENCODE Processing Pipeline 9ec2024c1b9553ba24b868f59ff8e2ee https://www.encodeproject.org/files/ENCFF708OEB/@@download/ENCFF708OEB.bam mm10 released mild to moderate bottlenecking ENCFF114DMI bed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF355NIR, ENCFF688CVA, ENCFF945UFA 842719 ENCODE Processing Pipeline 4c36d3e2784f81cb4bf832c2076fbc40 https://www.encodeproject.org/files/ENCFF114DMI/@@download/ENCFF114DMI.bed.gz mm10 released mild to moderate bottlenecking ENCFF312HHV bed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF708OEB, ENCFF945UFA 1009015 ENCODE Processing Pipeline a3ce7c1a424543947256144638aa7a97 https://www.encodeproject.org/files/ENCFF312HHV/@@download/ENCFF312HHV.bed.gz mm10 released mild to moderate bottlenecking ENCFF464EXP bigBed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF114DMI 2639385 ENCODE Processing Pipeline debb29665212a097e7a795d2741a2b87 https://www.encodeproject.org/files/ENCFF464EXP/@@download/ENCFF464EXP.bigBed mm10 released mild to moderate bottlenecking ENCFF232JFD bed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF355NIR, ENCFF688CVA, ENCFF708OEB, ENCFF945UFA 878534 ENCODE Processing Pipeline 7e7b4e2b0f9fbd4c2c3dd854c05033a2 https://www.encodeproject.org/files/ENCFF232JFD/@@download/ENCFF232JFD.bed.gz mm10 released mild to moderate bottlenecking ENCFF855GDH bigWig signal p-value ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF355NIR, ENCFF688CVA, ENCFF708OEB, ENCFF945UFA 640471730 ENCODE Processing Pipeline 1735a9083f3e3080da8957b7f1501692 https://www.encodeproject.org/files/ENCFF855GDH/@@download/ENCFF855GDH.bigWig mm10 released mild to moderate bottlenecking ENCFF462CMS bigBed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF312HHV 3083533 ENCODE Processing Pipeline e356df52c772c15ca238327da4890e0b https://www.encodeproject.org/files/ENCFF462CMS/@@download/ENCFF462CMS.bigBed mm10 released mild to moderate bottlenecking ENCFF698WNP bigWig signal p-value ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF708OEB, ENCFF945UFA 485096422 ENCODE Processing Pipeline e1e54b73bc3f055a717d4d8dd3b14806 https://www.encodeproject.org/files/ENCFF698WNP/@@download/ENCFF698WNP.bigWig mm10 released mild to moderate bottlenecking ENCFF786HKB bigWig fold change over control ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF708OEB, ENCFF945UFA 475048625 ENCODE Processing Pipeline f7d430053cb970d46e29594e37c6bfc8 https://www.encodeproject.org/files/ENCFF786HKB/@@download/ENCFF786HKB.bigWig mm10 released mild to moderate bottlenecking ENCFF183VJJ bigBed narrowPeak peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF232JFD 2725894 ENCODE Processing Pipeline efb401b47f73bbee1cf23db853cc0d72 https://www.encodeproject.org/files/ENCFF183VJJ/@@download/ENCFF183VJJ.bigBed mm10 released mild to moderate bottlenecking ENCFF083EHC bigWig signal p-value ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF355NIR, ENCFF688CVA, ENCFF945UFA 445566951 ENCODE Processing Pipeline b2129c318afe518372907fe5a5ac95bc https://www.encodeproject.org/files/ENCFF083EHC/@@download/ENCFF083EHC.bigWig mm10 released mild to moderate bottlenecking ENCFF246JOP bigWig fold change over control ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF355NIR, ENCFF688CVA, ENCFF945UFA 468448602 ENCODE Processing Pipeline 9847377a72d37c2bbcbc6e3bd748c8b5 https://www.encodeproject.org/files/ENCFF246JOP/@@download/ENCFF246JOP.bigWig mm10 released mild to moderate bottlenecking ENCFF063FXI bed narrowPeak replicated peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF114DMI, ENCFF232JFD, ENCFF312HHV 1062161 ENCODE Processing Pipeline 03d93715abbe36334e178049bf2b6187 https://www.encodeproject.org/files/ENCFF063FXI/@@download/ENCFF063FXI.bed.gz mm10 released mild to moderate bottlenecking ENCFF339BQU bigBed narrowPeak replicated peaks ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF063FXI 2423332 ENCODE Processing Pipeline fc25d136071d896e9982607c1d8215ad https://www.encodeproject.org/files/ENCFF339BQU/@@download/ENCFF339BQU.bigBed mm10 released mild to moderate bottlenecking ENCFF045FHU bigWig fold change over control ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF355NIR, ENCFF688CVA, ENCFF708OEB, ENCFF945UFA 734788704 ENCODE Processing Pipeline a21768f77572d449cc9b4a40c8489bf6 https://www.encodeproject.org/files/ENCFF045FHU/@@download/ENCFF045FHU.bigWig mm10 released mild to moderate bottlenecking ENCFF710GYU fastq reads ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2907785175 Bing Ren, UCSD ba102ebd902473a74eb5183b3fd150d6 SRA:SRR3653015 https://www.encodeproject.org/files/ENCFF710GYU/@@download/ENCFF710GYU.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF292YPK fastq reads ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2477311394 Bing Ren, UCSD bd138744752861ab4656a8d51c321033 SRA:SRR3653013 https://www.encodeproject.org/files/ENCFF292YPK/@@download/ENCFF292YPK.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF592WTG bam alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF710GYU, ENCFF806TVZ 2450721058 ENCODE Processing Pipeline 34ce276af4cd9412f2e1094a9faa6d18 https://www.encodeproject.org/files/ENCFF592WTG/@@download/ENCFF592WTG.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF476GUX bam alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF292YPK, ENCFF806TVZ 2084372605 ENCODE Processing Pipeline ff772fef13d30882f10a50bf387185b1 https://www.encodeproject.org/files/ENCFF476GUX/@@download/ENCFF476GUX.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF684JPM fastq reads ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 175062888 Bing Ren, UCSD 455eb83ea5bb69e5abf29386e9e758f3 SRA:SRR3653016 https://www.encodeproject.org/files/ENCFF684JPM/@@download/ENCFF684JPM.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF883NHJ fastq reads ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 496965586 Bing Ren, UCSD 6aabcfffbdbc1020e78f80565b323d58 SRA:SRR3653014 https://www.encodeproject.org/files/ENCFF883NHJ/@@download/ENCFF883NHJ.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF473NYY bam unfiltered alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF292YPK, ENCFF883NHJ 3778384232 ENCODE Processing Pipeline 9d02aed17522abfc4c3da7f2aa4fb66a https://www.encodeproject.org/files/ENCFF473NYY/@@download/ENCFF473NYY.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF875QWM bam unfiltered alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF684JPM, ENCFF710GYU 3822137394 ENCODE Processing Pipeline c8ac4dfb5cdc5c9fdaf1281d680a2503 https://www.encodeproject.org/files/ENCFF875QWM/@@download/ENCFF875QWM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF285XPR bam alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF292YPK, ENCFF883NHJ 2606631329 ENCODE Processing Pipeline d25de6a07d61a023be378f379f251eb2 https://www.encodeproject.org/files/ENCFF285XPR/@@download/ENCFF285XPR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF627RIT bam alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF684JPM, ENCFF710GYU 2648315894 ENCODE Processing Pipeline 5b2a4e03bdb56793d331996210667cdb https://www.encodeproject.org/files/ENCFF627RIT/@@download/ENCFF627RIT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AOH fastq reads ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1848232850 Bing Ren, UCSD bae1846e9d0393032175aeda066827f2 SRA:SRR3653228 https://www.encodeproject.org/files/ENCFF002AOH/@@download/ENCFF002AOH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQH/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF002AOL fastq reads ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1760699055 Bing Ren, UCSD b3539ceb443cbcf7bed51976fed6ab63 SRA:SRR3653227 https://www.encodeproject.org/files/ENCFF002AOL/@@download/ENCFF002AOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQD/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF390MHY bam alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOH, ENCFF806TVZ 1268323861 ENCODE Processing Pipeline 37ef029dd5eb5af6eb9590d299be7d2e https://www.encodeproject.org/files/ENCFF390MHY/@@download/ENCFF390MHY.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF698NRM bam alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOL, ENCFF806TVZ 1095094758 ENCODE Processing Pipeline 65a29740d5a85809108b7391510da8f5 https://www.encodeproject.org/files/ENCFF698NRM/@@download/ENCFF698NRM.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF224PZV bed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF698NRM, ENCFF999ZTB 1071336 ENCODE Processing Pipeline 1262bc9f0896440764b23d779c048ff7 https://www.encodeproject.org/files/ENCFF224PZV/@@download/ENCFF224PZV.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF679BKX bigBed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PZV 2424661 ENCODE Processing Pipeline 8dc2a2d8538f9b81a53ed1bddd35552f https://www.encodeproject.org/files/ENCFF679BKX/@@download/ENCFF679BKX.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF536IMX bed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF390MHY, ENCFF698NRM, ENCFF999ZTB 585713 ENCODE Processing Pipeline 94b64f1d8119e7b4adafe394e9e8e829 https://www.encodeproject.org/files/ENCFF536IMX/@@download/ENCFF536IMX.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF553USQ bed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF390MHY, ENCFF999ZTB 672378 ENCODE Processing Pipeline f695299b30c6c4fab7786d80cf255756 https://www.encodeproject.org/files/ENCFF553USQ/@@download/ENCFF553USQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF018SPE bigBed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF553USQ 1916025 ENCODE Processing Pipeline a4699ab8196c75860671947c6c5b0751 https://www.encodeproject.org/files/ENCFF018SPE/@@download/ENCFF018SPE.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF043UDL bigBed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF536IMX 1682799 ENCODE Processing Pipeline f4cd8b5094061af2f01894a99b2c4518 https://www.encodeproject.org/files/ENCFF043UDL/@@download/ENCFF043UDL.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF336EMU bigWig signal p-value ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF698NRM, ENCFF999ZTB 356090706 ENCODE Processing Pipeline ee28ea25517e716a9dd1328b07d8ed50 https://www.encodeproject.org/files/ENCFF336EMU/@@download/ENCFF336EMU.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF792OJQ bigWig signal p-value ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF390MHY, ENCFF999ZTB 405698773 ENCODE Processing Pipeline fcb2003840c53d3439857bd778ba93ab https://www.encodeproject.org/files/ENCFF792OJQ/@@download/ENCFF792OJQ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF981ONC bigWig signal p-value ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF390MHY, ENCFF698NRM, ENCFF999ZTB 392967814 ENCODE Processing Pipeline da881fc6315c7c318fa5cbd5c065f9d2 https://www.encodeproject.org/files/ENCFF981ONC/@@download/ENCFF981ONC.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF746QVM bigWig fold change over control ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF698NRM, ENCFF999ZTB 337931261 ENCODE Processing Pipeline 76783d4edc38f002b61e616b94717d3f https://www.encodeproject.org/files/ENCFF746QVM/@@download/ENCFF746QVM.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF013IXP bigWig fold change over control ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF390MHY, ENCFF999ZTB 390868105 ENCODE Processing Pipeline dc113b34c0b0d5647fc3334424cd433e https://www.encodeproject.org/files/ENCFF013IXP/@@download/ENCFF013IXP.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF469IDJ bigWig fold change over control ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF390MHY, ENCFF698NRM, ENCFF999ZTB 605563814 ENCODE Processing Pipeline 89d6c5ff0ff56f0dbd94a42552bde617 https://www.encodeproject.org/files/ENCFF469IDJ/@@download/ENCFF469IDJ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF780AFU bed narrowPeak replicated peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PZV, ENCFF536IMX, ENCFF553USQ 704368 ENCODE Processing Pipeline 6278991845bfbb31f91294c14b3cdf26 https://www.encodeproject.org/files/ENCFF780AFU/@@download/ENCFF780AFU.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF781VSH bigBed narrowPeak replicated peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF780AFU 1568143 ENCODE Processing Pipeline 178b493141cfdff46f109987278a3ba2 https://www.encodeproject.org/files/ENCFF781VSH/@@download/ENCFF781VSH.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF934JCB bam unfiltered alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AOH, ENCFF018NEO 1933261772 ENCODE Processing Pipeline 3307273567358f0d1bd0457b1c6995a4 https://www.encodeproject.org/files/ENCFF934JCB/@@download/ENCFF934JCB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF088MWZ bam unfiltered alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOL, ENCFF018NEO 1806813695 ENCODE Processing Pipeline 74d485a84ed91cb6cac94f9e14ad104f https://www.encodeproject.org/files/ENCFF088MWZ/@@download/ENCFF088MWZ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF585XLF bam alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AOH, ENCFF018NEO 1268052501 ENCODE Processing Pipeline 509473d77f4b5112c77f22a88d3016ca https://www.encodeproject.org/files/ENCFF585XLF/@@download/ENCFF585XLF.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF393KEH bam alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOL, ENCFF018NEO 1094868510 ENCODE Processing Pipeline 03a826b46f066cd4730a5cdd333367e9 https://www.encodeproject.org/files/ENCFF393KEH/@@download/ENCFF393KEH.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF393SIT bed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF393KEH, ENCFF399OUP, ENCFF863NZX 1071588 ENCODE Processing Pipeline 38210a3707542312cf3ad48c6315ba11 https://www.encodeproject.org/files/ENCFF393SIT/@@download/ENCFF393SIT.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF806NNZ bed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF585XLF, ENCFF863NZX 487425 ENCODE Processing Pipeline 0611041910ae5f1672b12842030918de https://www.encodeproject.org/files/ENCFF806NNZ/@@download/ENCFF806NNZ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF604OZR bigBed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF393SIT 2427171 ENCODE Processing Pipeline 63eaf1b6313a850a0049cfef93786c9b https://www.encodeproject.org/files/ENCFF604OZR/@@download/ENCFF604OZR.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF694EVA bed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF393KEH, ENCFF399OUP, ENCFF585XLF, ENCFF863NZX 590727 ENCODE Processing Pipeline 9b8d9712cde676af88ecdcadef62aeb5 https://www.encodeproject.org/files/ENCFF694EVA/@@download/ENCFF694EVA.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF482OZM bigBed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806NNZ 1456783 ENCODE Processing Pipeline 6153ab9e9015899d7b8946f4ec25e060 https://www.encodeproject.org/files/ENCFF482OZM/@@download/ENCFF482OZM.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF072EVF bigBed narrowPeak peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF694EVA 1697566 ENCODE Processing Pipeline e963bed29f02b60dc35f7a74e3dc02a4 https://www.encodeproject.org/files/ENCFF072EVF/@@download/ENCFF072EVF.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF020FQA bigWig signal p-value ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF393KEH, ENCFF399OUP, ENCFF863NZX 400600037 ENCODE Processing Pipeline 916e4b8b9b02693697d63ea0d31f4504 https://www.encodeproject.org/files/ENCFF020FQA/@@download/ENCFF020FQA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF575FKB bigWig signal p-value ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF585XLF, ENCFF863NZX 218953093 ENCODE Processing Pipeline 703831f3181de4c78f82c716b71353eb https://www.encodeproject.org/files/ENCFF575FKB/@@download/ENCFF575FKB.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF847WUI bigWig signal p-value ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF393KEH, ENCFF399OUP, ENCFF585XLF, ENCFF863NZX 402073236 ENCODE Processing Pipeline 8f9dd22500e475c21a69e8ee02ecf20b https://www.encodeproject.org/files/ENCFF847WUI/@@download/ENCFF847WUI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF102TZB bigWig fold change over control ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF393KEH, ENCFF399OUP, ENCFF863NZX 338594777 ENCODE Processing Pipeline 442967cd5bb4bd90b116a7f7a099f1ca https://www.encodeproject.org/files/ENCFF102TZB/@@download/ENCFF102TZB.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF470POS bigWig fold change over control ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF585XLF, ENCFF863NZX 338056625 ENCODE Processing Pipeline c72f26883d34bb61c517516a195863ed https://www.encodeproject.org/files/ENCFF470POS/@@download/ENCFF470POS.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF753BLB bigWig fold change over control ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF393KEH, ENCFF399OUP, ENCFF585XLF, ENCFF863NZX 615525373 ENCODE Processing Pipeline 44a300849aed5fdcb5fa0c3f58bc8f6e https://www.encodeproject.org/files/ENCFF753BLB/@@download/ENCFF753BLB.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF851AGI bed narrowPeak replicated peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF393SIT, ENCFF694EVA, ENCFF806NNZ 640225 ENCODE Processing Pipeline 4b57449f0b4cb9a717ada22746f1463c https://www.encodeproject.org/files/ENCFF851AGI/@@download/ENCFF851AGI.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF338KAN bigBed narrowPeak replicated peaks ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF851AGI 1445499 ENCODE Processing Pipeline 6d5a7d72c99951fbad3172ec356e1635 https://www.encodeproject.org/files/ENCFF338KAN/@@download/ENCFF338KAN.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF002AEQ fastq reads ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1315519655 Bing Ren, UCSD 40a8192ed307edaf08d70f0ec01dcd52 SRA:SRR3651261 https://www.encodeproject.org/files/ENCFF002AEQ/@@download/ENCFF002AEQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQC/ released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF002AEU fastq reads ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1445127155 Bing Ren, UCSD 5377136fe74166a46a5c8d63aa3079ee SRA:SRR3651262 https://www.encodeproject.org/files/ENCFF002AEU/@@download/ENCFF002AEU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQE/ released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF751IBT bam alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AEU, ENCFF806TVZ 1093422045 ENCODE Processing Pipeline 82cf09cee82bafccf42fc4a1718775b5 https://www.encodeproject.org/files/ENCFF751IBT/@@download/ENCFF751IBT.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF241KGJ bam alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AEQ, ENCFF806TVZ 754438993 ENCODE Processing Pipeline 02cea584585bc336e582f2dd77e468db https://www.encodeproject.org/files/ENCFF241KGJ/@@download/ENCFF241KGJ.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF511YZY bed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF241KGJ, ENCFF387UYW, ENCFF999TAG 1749035 ENCODE Processing Pipeline c7351baa12ef53ecfaa501597edda042 https://www.encodeproject.org/files/ENCFF511YZY/@@download/ENCFF511YZY.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF999OET bed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF751IBT, ENCFF999TAG 1001969 ENCODE Processing Pipeline 60fbfa90741665e5886cfc496373f413 https://www.encodeproject.org/files/ENCFF999OET/@@download/ENCFF999OET.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF749NRG bed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF241KGJ, ENCFF387UYW, ENCFF751IBT, ENCFF999TAG 1242491 ENCODE Processing Pipeline d3a840ff2be4d2abb27e2624b9757b3e https://www.encodeproject.org/files/ENCFF749NRG/@@download/ENCFF749NRG.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF614XJU bigBed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF999OET 2523000 ENCODE Processing Pipeline 547b3f47131a579c2617e322cb236452 https://www.encodeproject.org/files/ENCFF614XJU/@@download/ENCFF614XJU.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF339DQV bigBed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF511YZY 3868902 ENCODE Processing Pipeline d3acf3a5bf6553dcf07ade7348b1eec0 https://www.encodeproject.org/files/ENCFF339DQV/@@download/ENCFF339DQV.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF053OFA bigBed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF749NRG 3602935 ENCODE Processing Pipeline 6cd524396d1d82415579ea3ad95356c0 https://www.encodeproject.org/files/ENCFF053OFA/@@download/ENCFF053OFA.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF857UDC bigWig signal p-value ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF241KGJ, ENCFF387UYW, ENCFF999TAG 456584825 ENCODE Processing Pipeline 456b6f03f58c6049f82e2dae8cfbb54c https://www.encodeproject.org/files/ENCFF857UDC/@@download/ENCFF857UDC.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF785PTK bigWig signal p-value ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF751IBT, ENCFF999TAG 458284652 ENCODE Processing Pipeline bae1e10a2c402590750384ca2f295632 https://www.encodeproject.org/files/ENCFF785PTK/@@download/ENCFF785PTK.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF657RNW bigWig signal p-value ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF241KGJ, ENCFF387UYW, ENCFF751IBT, ENCFF999TAG 673709410 ENCODE Processing Pipeline dcee341074694889909827afafa81c34 https://www.encodeproject.org/files/ENCFF657RNW/@@download/ENCFF657RNW.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF826FZO bigWig fold change over control ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF751IBT, ENCFF999TAG 465046421 ENCODE Processing Pipeline b472053ebc1fb944c826b49608931f81 https://www.encodeproject.org/files/ENCFF826FZO/@@download/ENCFF826FZO.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF779STE bigWig fold change over control ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF241KGJ, ENCFF387UYW, ENCFF999TAG 390378415 ENCODE Processing Pipeline 824d1ec52d4255820cc95b383975125a https://www.encodeproject.org/files/ENCFF779STE/@@download/ENCFF779STE.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF047ZGQ bigWig fold change over control ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF241KGJ, ENCFF387UYW, ENCFF751IBT, ENCFF999TAG 681893642 ENCODE Processing Pipeline b903f9c0f317263a527382fcfa466b3c https://www.encodeproject.org/files/ENCFF047ZGQ/@@download/ENCFF047ZGQ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF346WFV bigBed narrowPeak replicated peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF648LVJ 2309512 ENCODE Processing Pipeline f4d22cdeb5c92c046b9a90ba73721647 https://www.encodeproject.org/files/ENCFF346WFV/@@download/ENCFF346WFV.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF648LVJ bed narrowPeak replicated peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF511YZY, ENCFF749NRG, ENCFF999OET 933475 ENCODE Processing Pipeline 394eac4903a4433d3e8ceb33390f20da https://www.encodeproject.org/files/ENCFF648LVJ/@@download/ENCFF648LVJ.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF032MFD bam unfiltered alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEQ, ENCFF018NEO 1346144752 ENCODE Processing Pipeline 1d1f88790db6513af5a60e4738685d81 https://www.encodeproject.org/files/ENCFF032MFD/@@download/ENCFF032MFD.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF313FDX bam alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEQ, ENCFF018NEO 754278179 ENCODE Processing Pipeline 1872698034c67c2180340e9c986592e5 https://www.encodeproject.org/files/ENCFF313FDX/@@download/ENCFF313FDX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF765TZO bam unfiltered alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEU, ENCFF018NEO 1299213432 ENCODE Processing Pipeline 1ef0061939938629a032533f1e61ab5a https://www.encodeproject.org/files/ENCFF765TZO/@@download/ENCFF765TZO.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF603MJM bam alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEU, ENCFF018NEO 841048313 ENCODE Processing Pipeline 6f91d6a5f4d72fe86e3eb511389b610b https://www.encodeproject.org/files/ENCFF603MJM/@@download/ENCFF603MJM.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF304OMO bed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF313FDX, ENCFF446WFN 1716980 ENCODE Processing Pipeline 143142043f499301112b03892bdbcb6e https://www.encodeproject.org/files/ENCFF304OMO/@@download/ENCFF304OMO.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF203WTM bed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF603MJM 961630 ENCODE Processing Pipeline ae02f1176296bbb369f0d77ea3abb679 https://www.encodeproject.org/files/ENCFF203WTM/@@download/ENCFF203WTM.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF909FXD bed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF313FDX, ENCFF446WFN, ENCFF603MJM 1251224 ENCODE Processing Pipeline f20b6a45de6b1c315a8ac4056d749563 https://www.encodeproject.org/files/ENCFF909FXD/@@download/ENCFF909FXD.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF378HIW bigBed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304OMO 3822783 ENCODE Processing Pipeline c1f8e366db29a5f430217d17b0fabc5a https://www.encodeproject.org/files/ENCFF378HIW/@@download/ENCFF378HIW.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF141DAC bigBed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF909FXD 3629062 ENCODE Processing Pipeline 2f2a360728bc6ef7dc0a85298ca5697d https://www.encodeproject.org/files/ENCFF141DAC/@@download/ENCFF141DAC.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF233LIX bigBed narrowPeak peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF203WTM 2436676 ENCODE Processing Pipeline caa99169a285f30513c259d678e967d3 https://www.encodeproject.org/files/ENCFF233LIX/@@download/ENCFF233LIX.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF625FRX bigWig signal p-value ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF313FDX, ENCFF446WFN 415889657 ENCODE Processing Pipeline 758d95f45349cf67494178e5a8ee1609 https://www.encodeproject.org/files/ENCFF625FRX/@@download/ENCFF625FRX.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF706VUU bigWig signal p-value ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF603MJM 411587189 ENCODE Processing Pipeline 1ab82d3c9cd5927e0720973f5a237072 https://www.encodeproject.org/files/ENCFF706VUU/@@download/ENCFF706VUU.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF469KCE bigWig signal p-value ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF313FDX, ENCFF446WFN, ENCFF603MJM 663189020 ENCODE Processing Pipeline 9bc7d48d4c7e8f9c2c22c5e8d55bd0ea https://www.encodeproject.org/files/ENCFF469KCE/@@download/ENCFF469KCE.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF219OSF bigWig fold change over control ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF603MJM 456536077 ENCODE Processing Pipeline 78083f12494cf32bcb366a321cb83143 https://www.encodeproject.org/files/ENCFF219OSF/@@download/ENCFF219OSF.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF923EBE bigWig fold change over control ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF313FDX, ENCFF446WFN 387166161 ENCODE Processing Pipeline a8b4972fb9005f7a3c403f11f7ddcd4a https://www.encodeproject.org/files/ENCFF923EBE/@@download/ENCFF923EBE.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF298GLI bigWig fold change over control ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF313FDX, ENCFF446WFN, ENCFF603MJM 664077259 ENCODE Processing Pipeline 4170c7add07ff097034c5c75342eb77d https://www.encodeproject.org/files/ENCFF298GLI/@@download/ENCFF298GLI.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF349QLQ bigBed narrowPeak replicated peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF515NHP 2295132 ENCODE Processing Pipeline f694f3f186b5c1541234f0cf822f3410 https://www.encodeproject.org/files/ENCFF349QLQ/@@download/ENCFF349QLQ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF515NHP bed narrowPeak replicated peaks ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF203WTM, ENCFF304OMO, ENCFF909FXD 932995 ENCODE Processing Pipeline 937f7aa7135c3a6ed74b985b636f8bc9 https://www.encodeproject.org/files/ENCFF515NHP/@@download/ENCFF515NHP.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF042TOB fastq reads ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1299857200 Richard Myers, HAIB a45959827f92b32f32c35f0de994e2e9 SRA:SRR5112068 https://www.encodeproject.org/files/ENCFF042TOB/@@download/ENCFF042TOB.fastq.gz Illumina HiSeq 2000 /files/ENCFF798MRO/ released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF299GTA fastq reads ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 982913959 Richard Myers, HAIB 5a1cc3646d8534b236e53acafb03dfde SRA:SRR5112069 https://www.encodeproject.org/files/ENCFF299GTA/@@download/ENCFF299GTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF314WCC/ released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF951HWD bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF299GTA 802123234 ENCODE Processing Pipeline 0f641534e8c230c05c6ef7a72527df05 https://www.encodeproject.org/files/ENCFF951HWD/@@download/ENCFF951HWD.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF701RFU bam unfiltered alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF042TOB 1407395795 ENCODE Processing Pipeline 45cb5e123000675304e9b54d3def1084 https://www.encodeproject.org/files/ENCFF701RFU/@@download/ENCFF701RFU.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF945QTD bam unfiltered alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF299GTA 1084718341 ENCODE Processing Pipeline 5c35f6624b21a3bd4395379d894a66c7 https://www.encodeproject.org/files/ENCFF945QTD/@@download/ENCFF945QTD.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF298QFB bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF042TOB 1008468872 ENCODE Processing Pipeline 043847caf9a1174e107b33b9f3b8afdf https://www.encodeproject.org/files/ENCFF298QFB/@@download/ENCFF298QFB.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF419MOZ bigWig signal p-value ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ 576823022 ENCODE Processing Pipeline 58fa1c72f2386095a64a24d29ca7307c https://www.encodeproject.org/files/ENCFF419MOZ/@@download/ENCFF419MOZ.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF971WWG bigWig signal p-value ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF554RMZ, ENCFF951HWD 452936680 ENCODE Processing Pipeline 9aa4cd4f14e650bbc7333d963bc16b1b https://www.encodeproject.org/files/ENCFF971WWG/@@download/ENCFF971WWG.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF259OPA bigWig signal p-value ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ, ENCFF951HWD 797513999 ENCODE Processing Pipeline fdc8665dd678d42b074960d3333d14b6 https://www.encodeproject.org/files/ENCFF259OPA/@@download/ENCFF259OPA.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF492FYK bigWig fold change over control ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF554RMZ, ENCFF951HWD 408720921 ENCODE Processing Pipeline e55bbdd25d4ee139f554c2e37b2fac28 https://www.encodeproject.org/files/ENCFF492FYK/@@download/ENCFF492FYK.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF563DIX bed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ 6210782 ENCODE Processing Pipeline 654303876aa405dddc9f473aa1359aca https://www.encodeproject.org/files/ENCFF563DIX/@@download/ENCFF563DIX.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF771SCO bed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ, ENCFF951HWD 6703209 ENCODE Processing Pipeline bc507990ad9d2002c4ca6f2db26560e6 https://www.encodeproject.org/files/ENCFF771SCO/@@download/ENCFF771SCO.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF588WUZ bigWig fold change over control ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ 577217845 ENCODE Processing Pipeline 2aed24895e7586aaf9e1ded78eb4e7f1 https://www.encodeproject.org/files/ENCFF588WUZ/@@download/ENCFF588WUZ.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF041DVE bigBed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF771SCO 13353058 ENCODE Processing Pipeline e3667496268d004c629ac6edd7c98260 https://www.encodeproject.org/files/ENCFF041DVE/@@download/ENCFF041DVE.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF499JRK bed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF554RMZ, ENCFF951HWD 5421510 ENCODE Processing Pipeline 16709785b46f6172a6f853e5fc5e1156 https://www.encodeproject.org/files/ENCFF499JRK/@@download/ENCFF499JRK.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF338GTZ bigWig fold change over control ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF298QFB, ENCFF365VOZ, ENCFF554RMZ, ENCFF951HWD 851171952 ENCODE Processing Pipeline 98fd057805cf46af525a62eeff062573 https://www.encodeproject.org/files/ENCFF338GTZ/@@download/ENCFF338GTZ.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF089WCL bigBed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF563DIX 13324707 ENCODE Processing Pipeline 0dc0455854be8596eb8d72295602aec8 https://www.encodeproject.org/files/ENCFF089WCL/@@download/ENCFF089WCL.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF312COK bigBed narrowPeak peaks and background as input for IDR ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF499JRK 13241120 ENCODE Processing Pipeline 8749de4fe3b71152d70e58d5f21d419a https://www.encodeproject.org/files/ENCFF312COK/@@download/ENCFF312COK.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF625YHS bed narrowPeak conservative idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF499JRK, ENCFF547MET, ENCFF563DIX, ENCFF771SCO 290180 ENCODE Processing Pipeline c01e8afa0b1270305106568dda0b7ac8 https://www.encodeproject.org/files/ENCFF625YHS/@@download/ENCFF625YHS.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF751ELG bigBed narrowPeak conservative idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF625YHS 587847 ENCODE Processing Pipeline 53997012c3400fe63d99f9fbeafdcd83 https://www.encodeproject.org/files/ENCFF751ELG/@@download/ENCFF751ELG.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF320ZSC bed narrowPeak optimal idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF499JRK, ENCFF547MET, ENCFF563DIX, ENCFF771SCO 320977 ENCODE Processing Pipeline 0f513be9893c8de8f73b61ec1d824f37 https://www.encodeproject.org/files/ENCFF320ZSC/@@download/ENCFF320ZSC.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF645JCX bigBed narrowPeak optimal idr thresholded peaks ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF320ZSC 635216 ENCODE Processing Pipeline b86c59bec3f607c13ae169414df540f5 https://www.encodeproject.org/files/ENCFF645JCX/@@download/ENCFF645JCX.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF001ZSI fastq reads ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 36 single-ended 1918553075 Bing Ren, UCSD 7d1b3fc78e137608f1d7fd16f663c8a4 SRA:SRR3653343 https://www.encodeproject.org/files/ENCFF001ZSI/@@download/ENCFF001ZSI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVA/ released low read length control insufficient read depth ENCFF001ZSJ fastq reads ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 36 single-ended 1797401485 Bing Ren, UCSD db353844b7fd2089a146bbce6e36edb6 SRA:SRR3653344 https://www.encodeproject.org/files/ENCFF001ZSJ/@@download/ENCFF001ZSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUZ/ released low read length control insufficient read depth ENCFF224TKT bam alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF001ZSJ, ENCFF806TVZ 1004828499 ENCODE Processing Pipeline dfc57b60f2ec4d7f85f2cb53ccc49440 https://www.encodeproject.org/files/ENCFF224TKT/@@download/ENCFF224TKT.bam mm10-minimal archived low read length control insufficient read depth ENCFF112KCD bam alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF001ZSI, ENCFF806TVZ 1182630800 ENCODE Processing Pipeline 94a12050a36048a6a96ec82e90a0e1dc https://www.encodeproject.org/files/ENCFF112KCD/@@download/ENCFF112KCD.bam mm10-minimal archived low read length control insufficient read depth ENCFF216IEA bed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF112KCD, ENCFF223QEB, ENCFF976TWF 399846 ENCODE Processing Pipeline 9c02bd67625e68b57b12e848d7265220 https://www.encodeproject.org/files/ENCFF216IEA/@@download/ENCFF216IEA.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF851PJI bed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF223QEB, ENCFF224TKT, ENCFF976TWF 855681 ENCODE Processing Pipeline 12f87d265cf3806827804baeea2a1df2 https://www.encodeproject.org/files/ENCFF851PJI/@@download/ENCFF851PJI.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF512IZR bigWig signal p-value ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF112KCD, ENCFF223QEB, ENCFF224TKT, ENCFF976TWF 521197256 ENCODE Processing Pipeline 2e317559d1baf7add653b64206877923 https://www.encodeproject.org/files/ENCFF512IZR/@@download/ENCFF512IZR.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF915GIQ bigBed narrowPeak replicated peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF418SZH 336936 ENCODE Processing Pipeline 456c8165b3082176c39c7bb81c328bbf https://www.encodeproject.org/files/ENCFF915GIQ/@@download/ENCFF915GIQ.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF086UNB bigWig signal p-value ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF112KCD, ENCFF223QEB, ENCFF976TWF 479816569 ENCODE Processing Pipeline 616cb0ee8c3dd24ea8b4ceb08fcc611e https://www.encodeproject.org/files/ENCFF086UNB/@@download/ENCFF086UNB.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF059KML bigBed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF851PJI 1499317 ENCODE Processing Pipeline 72d60481eabf1e660f2673c8aea492e4 https://www.encodeproject.org/files/ENCFF059KML/@@download/ENCFF059KML.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF625SVB bigWig fold change over control ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF223QEB, ENCFF224TKT, ENCFF976TWF 437077434 ENCODE Processing Pipeline 96a2523b4869f4e8a115a5c462cc6829 https://www.encodeproject.org/files/ENCFF625SVB/@@download/ENCFF625SVB.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF749XNL bigWig fold change over control ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF112KCD, ENCFF223QEB, ENCFF224TKT, ENCFF976TWF 744495880 ENCODE Processing Pipeline de8ea2f6ed959be6923b5bbef3641019 https://www.encodeproject.org/files/ENCFF749XNL/@@download/ENCFF749XNL.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF418SZH bed narrowPeak replicated peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF216IEA, ENCFF851PJI, ENCFF952LBY 115646 ENCODE Processing Pipeline 9d1e03193095eb4d49f414b9c5fe3ac0 https://www.encodeproject.org/files/ENCFF418SZH/@@download/ENCFF418SZH.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF952LBY bed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF112KCD, ENCFF223QEB, ENCFF224TKT, ENCFF976TWF 169322 ENCODE Processing Pipeline f83d1ff38a1c2bf0a8cc7a1732dbd9d3 https://www.encodeproject.org/files/ENCFF952LBY/@@download/ENCFF952LBY.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF194MXM bigWig fold change over control ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF112KCD, ENCFF223QEB, ENCFF976TWF 488458034 ENCODE Processing Pipeline a41a83103721b6a2d487b15a1c474813 https://www.encodeproject.org/files/ENCFF194MXM/@@download/ENCFF194MXM.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF547DJE bigBed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF216IEA 846949 ENCODE Processing Pipeline 73e09f29c4bc59beefdc9d19a7b169a0 https://www.encodeproject.org/files/ENCFF547DJE/@@download/ENCFF547DJE.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF705BYL bigBed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF952LBY 390404 ENCODE Processing Pipeline 66392bc94a15de813a59ee3789d4e5ba https://www.encodeproject.org/files/ENCFF705BYL/@@download/ENCFF705BYL.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF231LMB bigWig signal p-value ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF223QEB, ENCFF224TKT, ENCFF976TWF 365494235 ENCODE Processing Pipeline d0cfb643ed5999fbcc6c89974745b390 https://www.encodeproject.org/files/ENCFF231LMB/@@download/ENCFF231LMB.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF123ENZ bam unfiltered alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF001ZSI, ENCFF018NEO 2440393148 ENCODE Processing Pipeline f83c78fd3a7cfeadb6608cef5d2978e7 https://www.encodeproject.org/files/ENCFF123ENZ/@@download/ENCFF123ENZ.bam mm10 released low read length control insufficient read depth ENCFF467SCN bam unfiltered alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF001ZSJ, ENCFF018NEO 2279841749 ENCODE Processing Pipeline 64758293ef32b535e36efe10bdbc8790 https://www.encodeproject.org/files/ENCFF467SCN/@@download/ENCFF467SCN.bam mm10 released low read length control insufficient read depth ENCFF717GHT bam alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF001ZSI, ENCFF018NEO 1181913717 ENCODE Processing Pipeline 5fd839eb1794b039b637f1aa33869277 https://www.encodeproject.org/files/ENCFF717GHT/@@download/ENCFF717GHT.bam mm10 released low read length control insufficient read depth ENCFF258ZNR bam alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF001ZSJ, ENCFF018NEO 1004035000 ENCODE Processing Pipeline 9f39c5c373d10c45e52d43f6f2fb8f8c https://www.encodeproject.org/files/ENCFF258ZNR/@@download/ENCFF258ZNR.bam mm10 released low read length control insufficient read depth ENCFF630GHG bed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF563TGK, ENCFF717GHT, ENCFF903TSE 406077 ENCODE Processing Pipeline 2841ba15f433e0d1154e6bd252e1f18a https://www.encodeproject.org/files/ENCFF630GHG/@@download/ENCFF630GHG.bed.gz mm10 released low read length control insufficient read depth ENCFF411FSB bed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF258ZNR, ENCFF563TGK, ENCFF903TSE 818502 ENCODE Processing Pipeline fd66e69c01f8a9be37cee81934ec348a https://www.encodeproject.org/files/ENCFF411FSB/@@download/ENCFF411FSB.bed.gz mm10 released low read length control insufficient read depth ENCFF562DYU bigBed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF630GHG 858406 ENCODE Processing Pipeline aa0fbf6c12bc2eb9c7826b7b33c5169d https://www.encodeproject.org/files/ENCFF562DYU/@@download/ENCFF562DYU.bigBed mm10 released low read length control insufficient read depth ENCFF753GQB bed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF258ZNR, ENCFF563TGK, ENCFF717GHT, ENCFF903TSE 162270 ENCODE Processing Pipeline e514f5018615869d5ed4682a6c7fcd5b https://www.encodeproject.org/files/ENCFF753GQB/@@download/ENCFF753GQB.bed.gz mm10 released low read length control insufficient read depth ENCFF871AVT bigBed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF753GQB 462499 ENCODE Processing Pipeline c69bf3e53a7d07c5df095568935b289e https://www.encodeproject.org/files/ENCFF871AVT/@@download/ENCFF871AVT.bigBed mm10 released low read length control insufficient read depth ENCFF784CXY bigBed narrowPeak peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF411FSB 1462059 ENCODE Processing Pipeline 0b6a2595f4bcc003934fb55f6d89a72c https://www.encodeproject.org/files/ENCFF784CXY/@@download/ENCFF784CXY.bigBed mm10 released low read length control insufficient read depth ENCFF857XPG bigWig signal p-value ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF563TGK, ENCFF717GHT, ENCFF903TSE 373254895 ENCODE Processing Pipeline 31923a4b3092eb0da51422b4332b9d35 https://www.encodeproject.org/files/ENCFF857XPG/@@download/ENCFF857XPG.bigWig mm10 released low read length control insufficient read depth ENCFF058MOQ bigWig signal p-value ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF258ZNR, ENCFF563TGK, ENCFF903TSE 448053385 ENCODE Processing Pipeline bbe22688d4bfecbe614ec2c0b8791083 https://www.encodeproject.org/files/ENCFF058MOQ/@@download/ENCFF058MOQ.bigWig mm10 released low read length control insufficient read depth ENCFF553UTJ bigWig signal p-value ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF258ZNR, ENCFF563TGK, ENCFF717GHT, ENCFF903TSE 512943826 ENCODE Processing Pipeline 03cb31297c332229c1139d847e412d8d https://www.encodeproject.org/files/ENCFF553UTJ/@@download/ENCFF553UTJ.bigWig mm10 released low read length control insufficient read depth ENCFF155OBH bigWig fold change over control ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF563TGK, ENCFF717GHT, ENCFF903TSE 490570065 ENCODE Processing Pipeline d3f221a0efd1b700d485917a5886312c https://www.encodeproject.org/files/ENCFF155OBH/@@download/ENCFF155OBH.bigWig mm10 released low read length control insufficient read depth ENCFF501SZM bigWig fold change over control ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF258ZNR, ENCFF563TGK, ENCFF903TSE 425140756 ENCODE Processing Pipeline 9c6c3e7d0e9ba009db5bf7eef858ae5a https://www.encodeproject.org/files/ENCFF501SZM/@@download/ENCFF501SZM.bigWig mm10 released low read length control insufficient read depth ENCFF937IQZ bigWig fold change over control ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF258ZNR, ENCFF563TGK, ENCFF717GHT, ENCFF903TSE 737470403 ENCODE Processing Pipeline 614323d5f27ea793735488fa29e08067 https://www.encodeproject.org/files/ENCFF937IQZ/@@download/ENCFF937IQZ.bigWig mm10 released low read length control insufficient read depth ENCFF368NDM bed narrowPeak replicated peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF411FSB, ENCFF630GHG, ENCFF753GQB 130619 ENCODE Processing Pipeline 2676b112a62e3e326058c9b142d8b5c8 https://www.encodeproject.org/files/ENCFF368NDM/@@download/ENCFF368NDM.bed.gz mm10 released low read length control insufficient read depth ENCFF615JDW bigBed narrowPeak replicated peaks ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF368NDM 370459 ENCODE Processing Pipeline f588427365503e986c0c7534295ab010 https://www.encodeproject.org/files/ENCFF615JDW/@@download/ENCFF615JDW.bigBed mm10 released low read length control insufficient read depth ENCFF934XTI fastq reads ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 1583966187 Bing Ren, UCSD 0616b0436c35dee6e47b86b754cce66b SRA:SRR3652032 https://www.encodeproject.org/files/ENCFF934XTI/@@download/ENCFF934XTI.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released moderate library complexity, mild to moderate bottlenecking ENCFF703KDO fastq reads ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 1729077605 Bing Ren, UCSD da9e0362ce5aa8de864900f0f417dda7 SRA:SRR3652033 https://www.encodeproject.org/files/ENCFF703KDO/@@download/ENCFF703KDO.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released moderate library complexity, mild to moderate bottlenecking ENCFF927VYX bam alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF703KDO, ENCFF806TVZ 1143763554 ENCODE Processing Pipeline abc15e2ef0668c49b71c0eff3f6b78da https://www.encodeproject.org/files/ENCFF927VYX/@@download/ENCFF927VYX.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF325XVN bam alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF806TVZ, ENCFF934XTI 1017576959 ENCODE Processing Pipeline 75315f40e891bd6073e681968d499115 https://www.encodeproject.org/files/ENCFF325XVN/@@download/ENCFF325XVN.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF600NBD bigBed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF242DIU 3627744 ENCODE Processing Pipeline f5b2c8f19e21f030c79b71e7a5793a21 https://www.encodeproject.org/files/ENCFF600NBD/@@download/ENCFF600NBD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF176PNQ bigBed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF895UBQ 3717266 ENCODE Processing Pipeline 9538e0b0f2ac9edeec4ad90eb12d61b9 https://www.encodeproject.org/files/ENCFF176PNQ/@@download/ENCFF176PNQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF172PTB bigWig signal p-value ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF325XVN, ENCFF720CTQ, ENCFF927VYX 1101235365 ENCODE Processing Pipeline 8dd34730ab51573d8f1138a8e3ee0620 https://www.encodeproject.org/files/ENCFF172PTB/@@download/ENCFF172PTB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF234AME bigBed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF309XZW 4042730 ENCODE Processing Pipeline f22dcf031f702b77d08716c32bda31ef https://www.encodeproject.org/files/ENCFF234AME/@@download/ENCFF234AME.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF309XZW bed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF325XVN, ENCFF720CTQ, ENCFF927VYX 1409729 ENCODE Processing Pipeline 1872cba2ed4c4128ec9d4f0ed2af77d2 https://www.encodeproject.org/files/ENCFF309XZW/@@download/ENCFF309XZW.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF565WNP bigWig signal p-value ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF927VYX 648952071 ENCODE Processing Pipeline 1450426ec78212c1498c37bf2fd296fd https://www.encodeproject.org/files/ENCFF565WNP/@@download/ENCFF565WNP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF028CTB bigWig fold change over control ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF325XVN 492427778 ENCODE Processing Pipeline a3563c0c48dddd2b9607313dc27bb29a https://www.encodeproject.org/files/ENCFF028CTB/@@download/ENCFF028CTB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF903BCS bigWig fold change over control ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF325XVN, ENCFF720CTQ, ENCFF927VYX 1098064401 ENCODE Processing Pipeline cf6912802f64bba77cf1f908b25e1152 https://www.encodeproject.org/files/ENCFF903BCS/@@download/ENCFF903BCS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF242DIU bed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF325XVN 1202475 ENCODE Processing Pipeline 84a9bd8524114a2fec376308a4cbab3e https://www.encodeproject.org/files/ENCFF242DIU/@@download/ENCFF242DIU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF895UBQ bed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF927VYX 1240735 ENCODE Processing Pipeline bfa291ff513b98648fa96bb57f198092 https://www.encodeproject.org/files/ENCFF895UBQ/@@download/ENCFF895UBQ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF699URV bigWig fold change over control ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF927VYX 551862455 ENCODE Processing Pipeline 4f7c4775ad089e2696591f8e9d0cf6ef https://www.encodeproject.org/files/ENCFF699URV/@@download/ENCFF699URV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF704GVV bigWig signal p-value ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF325XVN 522911765 ENCODE Processing Pipeline 8fc478c0e47ab53410b150de44062be3 https://www.encodeproject.org/files/ENCFF704GVV/@@download/ENCFF704GVV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF521ZGM bigBed narrowPeak replicated peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF809LYI 3155172 ENCODE Processing Pipeline e233f688f442cf12075d08f2e0233f4d https://www.encodeproject.org/files/ENCFF521ZGM/@@download/ENCFF521ZGM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF809LYI bed narrowPeak replicated peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF242DIU, ENCFF309XZW, ENCFF895UBQ 1506795 ENCODE Processing Pipeline e5df0e18e77daa5d363e131ec025ae7c https://www.encodeproject.org/files/ENCFF809LYI/@@download/ENCFF809LYI.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF698TOJ bam unfiltered alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF934XTI 1821782869 ENCODE Processing Pipeline e99e3cd2e89bbe7bfcfb5df410b418df https://www.encodeproject.org/files/ENCFF698TOJ/@@download/ENCFF698TOJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF609FSJ bam alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF934XTI 1017423075 ENCODE Processing Pipeline a097f61dac550f5ced5988965ca1d67c https://www.encodeproject.org/files/ENCFF609FSJ/@@download/ENCFF609FSJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF479KMV bam unfiltered alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF703KDO 1977455697 ENCODE Processing Pipeline 538fc27656e6151a71c068dbbd915ca8 https://www.encodeproject.org/files/ENCFF479KMV/@@download/ENCFF479KMV.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF142UWE bam alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF703KDO 1143610326 ENCODE Processing Pipeline 277199075411117f5f241cf56536b81e https://www.encodeproject.org/files/ENCFF142UWE/@@download/ENCFF142UWE.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF990KJZ bed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF609FSJ, ENCFF741HOY 1180562 ENCODE Processing Pipeline 4659985fd05ec1699393f1d6c928cbc1 https://www.encodeproject.org/files/ENCFF990KJZ/@@download/ENCFF990KJZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF949FSH bed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF142UWE 1241771 ENCODE Processing Pipeline adfdf81d2a7cb1f9f3271ddb8c37e55d https://www.encodeproject.org/files/ENCFF949FSH/@@download/ENCFF949FSH.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF775NDA bed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF142UWE, ENCFF609FSJ, ENCFF741HOY 1410777 ENCODE Processing Pipeline fd4592b4faa77ef36b981ff8a28cc683 https://www.encodeproject.org/files/ENCFF775NDA/@@download/ENCFF775NDA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF388IMQ bigBed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF990KJZ 3570673 ENCODE Processing Pipeline c95548921d4ec215d35750fd0a57079a https://www.encodeproject.org/files/ENCFF388IMQ/@@download/ENCFF388IMQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF860YFL bigBed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF949FSH 3719523 ENCODE Processing Pipeline e87a76c11d1cfb31cf70f21478a692f2 https://www.encodeproject.org/files/ENCFF860YFL/@@download/ENCFF860YFL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF039RPY bigBed narrowPeak peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF775NDA 4043927 ENCODE Processing Pipeline f6e613ad348e9f58005f98a3465bad77 https://www.encodeproject.org/files/ENCFF039RPY/@@download/ENCFF039RPY.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF230OLL bigWig signal p-value ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF609FSJ, ENCFF741HOY 609594224 ENCODE Processing Pipeline bbfa38471f1473cb50c3fe3125214e79 https://www.encodeproject.org/files/ENCFF230OLL/@@download/ENCFF230OLL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF723AWP bigWig signal p-value ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF142UWE 622569691 ENCODE Processing Pipeline f69d510e5872f93dd8203f09b71437f7 https://www.encodeproject.org/files/ENCFF723AWP/@@download/ENCFF723AWP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF162OAX bigWig signal p-value ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF142UWE, ENCFF609FSJ, ENCFF741HOY 1032421056 ENCODE Processing Pipeline d3ac5614778fd792c42cc12af1ef1fb1 https://www.encodeproject.org/files/ENCFF162OAX/@@download/ENCFF162OAX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF195RIE bigWig fold change over control ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF609FSJ, ENCFF741HOY 501856928 ENCODE Processing Pipeline cecd800522eb0db87d783f9dbde99bd9 https://www.encodeproject.org/files/ENCFF195RIE/@@download/ENCFF195RIE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF642ENG bigWig fold change over control ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF142UWE 552840610 ENCODE Processing Pipeline d6a6a730873bb508d000beb58f1d0f07 https://www.encodeproject.org/files/ENCFF642ENG/@@download/ENCFF642ENG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF671LRY bigWig fold change over control ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF142UWE, ENCFF609FSJ, ENCFF741HOY 1097491506 ENCODE Processing Pipeline 05d9fb417c696ba2cd3b075ba210e3c1 https://www.encodeproject.org/files/ENCFF671LRY/@@download/ENCFF671LRY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF219QPV bed narrowPeak replicated peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF775NDA, ENCFF949FSH, ENCFF990KJZ 1502320 ENCODE Processing Pipeline b17330e61c2ad74525dd4655376306d4 https://www.encodeproject.org/files/ENCFF219QPV/@@download/ENCFF219QPV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF564OTB bigBed narrowPeak replicated peaks ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF219QPV 3147178 ENCODE Processing Pipeline f2b8e72c3e55808cded2aa67a6184218 https://www.encodeproject.org/files/ENCFF564OTB/@@download/ENCFF564OTB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF847CPG fastq reads ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 418277629 Bing Ren, UCSD 7b32d7cbd298caf72bb1617fe5771f6e SRA:SRR3652762 https://www.encodeproject.org/files/ENCFF847CPG/@@download/ENCFF847CPG.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF167BYV fastq reads ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1896128330 Bing Ren, UCSD 4efa66bd4d20442ad4532a498a13711c SRA:SRR3652763 https://www.encodeproject.org/files/ENCFF167BYV/@@download/ENCFF167BYV.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF803RGE fastq reads ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 437247180 Bing Ren, UCSD 9bea39537a4b41f46ea4dd158c79d796 SRA:SRR3652764 https://www.encodeproject.org/files/ENCFF803RGE/@@download/ENCFF803RGE.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF832IQF fastq reads ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1984860170 Bing Ren, UCSD 2961faae0255529c8ca4a13445d1cb05 SRA:SRR3652765 https://www.encodeproject.org/files/ENCFF832IQF/@@download/ENCFF832IQF.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF120NRT bam alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF167BYV, ENCFF806TVZ, ENCFF847CPG 2305305694 ENCODE Processing Pipeline 8225d3393b6b755a3cdd64d724df6f8d https://www.encodeproject.org/files/ENCFF120NRT/@@download/ENCFF120NRT.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF171GAD bam alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF803RGE, ENCFF806TVZ, ENCFF832IQF 2421775058 ENCODE Processing Pipeline c3803991e227acc46a39df675e1a7119 https://www.encodeproject.org/files/ENCFF171GAD/@@download/ENCFF171GAD.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF076ZTM bam unfiltered alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF018NEO, ENCFF167BYV, ENCFF847CPG 3194323802 ENCODE Processing Pipeline 6edc5938409c0ff3008956e1ee849671 https://www.encodeproject.org/files/ENCFF076ZTM/@@download/ENCFF076ZTM.bam mm10 released sequencing runs labeled as technical replicates ENCFF488BDM bam unfiltered alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF018NEO, ENCFF803RGE, ENCFF832IQF 3341938047 ENCODE Processing Pipeline ed3c4e47c044b0de7a4eabb28cc73863 https://www.encodeproject.org/files/ENCFF488BDM/@@download/ENCFF488BDM.bam mm10 released sequencing runs labeled as technical replicates ENCFF865QGZ bam alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF167BYV, ENCFF847CPG 2304761897 ENCODE Processing Pipeline f1c68fbfd44b58473c36b6ff9c621b7c https://www.encodeproject.org/files/ENCFF865QGZ/@@download/ENCFF865QGZ.bam mm10 released sequencing runs labeled as technical replicates ENCFF438RYK bam alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF803RGE, ENCFF832IQF 2421250630 ENCODE Processing Pipeline ae55ab7046ef2b0a1a18608c70322a22 https://www.encodeproject.org/files/ENCFF438RYK/@@download/ENCFF438RYK.bam mm10 released sequencing runs labeled as technical replicates ENCFF002AKQ fastq reads ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1494653850 Bing Ren, UCSD 7a49f48714bf0e0b10122248b2ee75f4 SRA:SRR3652294 https://www.encodeproject.org/files/ENCFF002AKQ/@@download/ENCFF002AKQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APV/ released low read length, mild to moderate bottlenecking, inconsistent control read length ENCFF002AKR fastq reads ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1265202320 Bing Ren, UCSD 25b51eee2d22dd3c1c9b9f271e65cf81 SRA:SRR3652295 https://www.encodeproject.org/files/ENCFF002AKR/@@download/ENCFF002AKR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APU/ released low read length, mild to moderate bottlenecking ENCFF914JSL bam alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKQ, ENCFF806TVZ 1113198074 ENCODE Processing Pipeline 4e37160542e748b5b184cd25201a5550 https://www.encodeproject.org/files/ENCFF914JSL/@@download/ENCFF914JSL.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF775ORI bam alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKR, ENCFF806TVZ 891669121 ENCODE Processing Pipeline 0a11f3a1d98ecbde2ce9c02dea3e54f2 https://www.encodeproject.org/files/ENCFF775ORI/@@download/ENCFF775ORI.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF171EVV bigBed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF188NLS 3490944 ENCODE Processing Pipeline ce788f61e9777ea49bd78df82977fc42 https://www.encodeproject.org/files/ENCFF171EVV/@@download/ENCFF171EVV.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF117CFZ bed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF775ORI 1116463 ENCODE Processing Pipeline ac9867de0ef9e7c7655eccc9cb5da82a https://www.encodeproject.org/files/ENCFF117CFZ/@@download/ENCFF117CFZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF760SJK bigBed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF117CFZ 3457821 ENCODE Processing Pipeline 619ac40c40b5e172d9afe38b64715d2a https://www.encodeproject.org/files/ENCFF760SJK/@@download/ENCFF760SJK.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF826EEK bed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF775ORI, ENCFF914JSL 1153522 ENCODE Processing Pipeline d0b735ddc49d0b0dd5b183c8b1786a84 https://www.encodeproject.org/files/ENCFF826EEK/@@download/ENCFF826EEK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF188NLS bed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF914JSL 1105088 ENCODE Processing Pipeline c8d6b8e8a68c920d4ccef498b033ee6a https://www.encodeproject.org/files/ENCFF188NLS/@@download/ENCFF188NLS.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF154DTS bigBed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF826EEK 3560920 ENCODE Processing Pipeline 735e5ed093927627b617670e2ad35dd0 https://www.encodeproject.org/files/ENCFF154DTS/@@download/ENCFF154DTS.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF199TYQ bigWig signal p-value ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF914JSL 483735004 ENCODE Processing Pipeline ac56cc966015b0c23631bc7b5c0020bd https://www.encodeproject.org/files/ENCFF199TYQ/@@download/ENCFF199TYQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF996KHE bigWig signal p-value ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF775ORI 450914835 ENCODE Processing Pipeline d8605ded9dd155cdf179d7338c1f7ae4 https://www.encodeproject.org/files/ENCFF996KHE/@@download/ENCFF996KHE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF715NVR bigWig signal p-value ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF775ORI, ENCFF914JSL 678170113 ENCODE Processing Pipeline 9129c21be59c9e0f23746bed67a8cfcb https://www.encodeproject.org/files/ENCFF715NVR/@@download/ENCFF715NVR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF906MGW bigWig fold change over control ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF914JSL 506405098 ENCODE Processing Pipeline 2b2ec139e7d3c36d9ccfeefb81294322 https://www.encodeproject.org/files/ENCFF906MGW/@@download/ENCFF906MGW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF046YSC bigWig fold change over control ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF775ORI 411799040 ENCODE Processing Pipeline adb6f7f4e7557d4f13328ddde410caa6 https://www.encodeproject.org/files/ENCFF046YSC/@@download/ENCFF046YSC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF703MKU bigWig fold change over control ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF775ORI, ENCFF914JSL 687806749 ENCODE Processing Pipeline 735a5d68eb3ee330f9fbfdfd228a774e https://www.encodeproject.org/files/ENCFF703MKU/@@download/ENCFF703MKU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF775VTO bed narrowPeak replicated peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF117CFZ, ENCFF188NLS, ENCFF826EEK 1342309 ENCODE Processing Pipeline bc55b8c8d9cf5c864b12b52b3ecfe5d2 https://www.encodeproject.org/files/ENCFF775VTO/@@download/ENCFF775VTO.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF786ZTD bigBed narrowPeak replicated peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF775VTO 2983584 ENCODE Processing Pipeline b8b5af5b58a9c55b338d0e4d89489210 https://www.encodeproject.org/files/ENCFF786ZTD/@@download/ENCFF786ZTD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF028PVD bam unfiltered alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKQ, ENCFF018NEO 1534868576 ENCODE Processing Pipeline e26915149cf0b91d474e185994232ede https://www.encodeproject.org/files/ENCFF028PVD/@@download/ENCFF028PVD.bam mm10 released low read length, mild to moderate bottlenecking ENCFF473FLL bam unfiltered alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKR, ENCFF018NEO 1272725078 ENCODE Processing Pipeline dffd0e1dd69037a6b70d79671ea89fe7 https://www.encodeproject.org/files/ENCFF473FLL/@@download/ENCFF473FLL.bam mm10 released low read length, mild to moderate bottlenecking ENCFF520SPV bam alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKQ, ENCFF018NEO 1113049935 ENCODE Processing Pipeline 48434830cc3055d2a675e406b4321392 https://www.encodeproject.org/files/ENCFF520SPV/@@download/ENCFF520SPV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF983REC bam alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKR, ENCFF018NEO 891597272 ENCODE Processing Pipeline b036ad07cb11ba323c6878fdef7754c2 https://www.encodeproject.org/files/ENCFF983REC/@@download/ENCFF983REC.bam mm10 released low read length, mild to moderate bottlenecking ENCFF022RNY bed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF983REC 970695 ENCODE Processing Pipeline a17829442632404d3640fc1042055e0d https://www.encodeproject.org/files/ENCFF022RNY/@@download/ENCFF022RNY.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF937ULJ bigBed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF022RNY 3068025 ENCODE Processing Pipeline aaea372ff4ca071ce8081fd8a790ee71 https://www.encodeproject.org/files/ENCFF937ULJ/@@download/ENCFF937ULJ.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF239BDL bigWig signal p-value ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF983REC 343977182 ENCODE Processing Pipeline 10d7c2c09f07679c535b71ca07e73370 https://www.encodeproject.org/files/ENCFF239BDL/@@download/ENCFF239BDL.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF252NSK bigWig fold change over control ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF983REC 313094999 ENCODE Processing Pipeline ffd9bdc96bec0b95f407c321a961bf4c https://www.encodeproject.org/files/ENCFF252NSK/@@download/ENCFF252NSK.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF460GTM bed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF520SPV 1100580 ENCODE Processing Pipeline ee9834eb9f8cc07a0dcc20a3b1e2bda1 https://www.encodeproject.org/files/ENCFF460GTM/@@download/ENCFF460GTM.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF571XEV bed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF396CVK, ENCFF506NSJ, ENCFF520SPV, ENCFF983REC 1129141 ENCODE Processing Pipeline fc8939e14b7b078f06c6e7a9ff2dd84e https://www.encodeproject.org/files/ENCFF571XEV/@@download/ENCFF571XEV.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF069TEO bigBed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF460GTM 3480399 ENCODE Processing Pipeline 2d4ac5c4603c3e51162e1948e3acd1de https://www.encodeproject.org/files/ENCFF069TEO/@@download/ENCFF069TEO.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF968KRX bigWig signal p-value ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF520SPV 547435801 ENCODE Processing Pipeline 9b37d79db35fe8b3fec2febdf250fecf https://www.encodeproject.org/files/ENCFF968KRX/@@download/ENCFF968KRX.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF368LRS bigBed narrowPeak peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF571XEV 3503866 ENCODE Processing Pipeline d33d880f8005ca58c91f546d85e11138 https://www.encodeproject.org/files/ENCFF368LRS/@@download/ENCFF368LRS.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF886FFH bigWig signal p-value ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF396CVK, ENCFF506NSJ, ENCFF520SPV, ENCFF983REC 714188062 ENCODE Processing Pipeline ccb2fc5fdbdac1dc98810d277f20d596 https://www.encodeproject.org/files/ENCFF886FFH/@@download/ENCFF886FFH.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF159AEV bigWig fold change over control ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF396CVK, ENCFF506NSJ, ENCFF520SPV, ENCFF983REC 721211262 ENCODE Processing Pipeline 5c21e8518f4fd012f01f738977547888 https://www.encodeproject.org/files/ENCFF159AEV/@@download/ENCFF159AEV.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF681SCU bigWig fold change over control ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF520SPV 517131683 ENCODE Processing Pipeline f40d10a66de812aa8c9135d363148435 https://www.encodeproject.org/files/ENCFF681SCU/@@download/ENCFF681SCU.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF425FZB bed narrowPeak replicated peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF022RNY, ENCFF460GTM, ENCFF571XEV 1344171 ENCODE Processing Pipeline 33a3d6a0c5f44b76eb517e017b41739d https://www.encodeproject.org/files/ENCFF425FZB/@@download/ENCFF425FZB.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF280OXN bigBed narrowPeak replicated peaks ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF425FZB 2964695 ENCODE Processing Pipeline b3fd950f1dbe21f2d6510c9e7cc2438b https://www.encodeproject.org/files/ENCFF280OXN/@@download/ENCFF280OXN.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF002BWP fastq reads ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1262829019 Bing Ren, UCSD 99b534feb1baff289b02d9a12c39aa61 SRA:SRR3652393 https://www.encodeproject.org/files/ENCFF002BWP/@@download/ENCFF002BWP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF411DQQ fastq reads ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 1016191881 Bing Ren, UCSD d91cb130970082c3cacae691a9bd283b SRA:SRR3652394 https://www.encodeproject.org/files/ENCFF411DQQ/@@download/ENCFF411DQQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF728TYN bam alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWP, ENCFF806TVZ 1056683554 ENCODE Processing Pipeline e0d12dfe604b9e3ce52ff864bed49c9c https://www.encodeproject.org/files/ENCFF728TYN/@@download/ENCFF728TYN.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF227HRH bam alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF411DQQ, ENCFF806TVZ 965637497 ENCODE Processing Pipeline aed79cb8e04fa4ff25eb7f8c5581f50b https://www.encodeproject.org/files/ENCFF227HRH/@@download/ENCFF227HRH.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF971REB bed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF227HRH, ENCFF439PVF, ENCFF578PIN 1394886 ENCODE Processing Pipeline fa23375cf5ae3fad8b3da465886a252f https://www.encodeproject.org/files/ENCFF971REB/@@download/ENCFF971REB.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF216YQP bed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF227HRH, ENCFF439PVF, ENCFF578PIN, ENCFF728TYN 1212834 ENCODE Processing Pipeline 8db65c5652aa363b3c980482591976a0 https://www.encodeproject.org/files/ENCFF216YQP/@@download/ENCFF216YQP.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF541HRM bed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF728TYN 1477640 ENCODE Processing Pipeline 4722197d812da2ec53bf9279dde350e3 https://www.encodeproject.org/files/ENCFF541HRM/@@download/ENCFF541HRM.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF720ENP bigBed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF971REB 4191009 ENCODE Processing Pipeline 54e20957602fbd5d5db08c19150fefc5 https://www.encodeproject.org/files/ENCFF720ENP/@@download/ENCFF720ENP.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF910AJJ bigBed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF216YQP 3649447 ENCODE Processing Pipeline 97c293f2d25374ccf18a64bb6eab52d0 https://www.encodeproject.org/files/ENCFF910AJJ/@@download/ENCFF910AJJ.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF605CDA bigWig signal p-value ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF728TYN 503607290 ENCODE Processing Pipeline bc1b584ddd4578255fc066d546eb99dd https://www.encodeproject.org/files/ENCFF605CDA/@@download/ENCFF605CDA.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF664SCR bigBed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF541HRM 4488402 ENCODE Processing Pipeline b7c77448d8b8e03fc79573f9a9750b1c https://www.encodeproject.org/files/ENCFF664SCR/@@download/ENCFF664SCR.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF935IQN bigWig signal p-value ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF227HRH, ENCFF439PVF, ENCFF578PIN, ENCFF728TYN 601625098 ENCODE Processing Pipeline caa25e849ed82229edbd4df0dba29aee https://www.encodeproject.org/files/ENCFF935IQN/@@download/ENCFF935IQN.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF421QOI bigWig signal p-value ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF227HRH, ENCFF439PVF, ENCFF578PIN 393705913 ENCODE Processing Pipeline d072206a295efb89300ad897af642cad https://www.encodeproject.org/files/ENCFF421QOI/@@download/ENCFF421QOI.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF249MDQ bigWig fold change over control ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF728TYN 476361524 ENCODE Processing Pipeline 2487a2f2fccc8ba3a35517bd543dd24f https://www.encodeproject.org/files/ENCFF249MDQ/@@download/ENCFF249MDQ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF891JGU bigWig fold change over control ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF227HRH, ENCFF439PVF, ENCFF578PIN 441580534 ENCODE Processing Pipeline cb32ede8265afd86b03c4d5995c8223e https://www.encodeproject.org/files/ENCFF891JGU/@@download/ENCFF891JGU.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF961SRC bigBed narrowPeak replicated peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF787INH 2977102 ENCODE Processing Pipeline 188d653d088781f4d419e2b4302c2f80 https://www.encodeproject.org/files/ENCFF961SRC/@@download/ENCFF961SRC.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF375FNH bigWig fold change over control ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF227HRH, ENCFF439PVF, ENCFF578PIN, ENCFF728TYN 721157511 ENCODE Processing Pipeline 7822de9007a95ac3a96265b60455a965 https://www.encodeproject.org/files/ENCFF375FNH/@@download/ENCFF375FNH.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF787INH bed narrowPeak replicated peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF216YQP, ENCFF541HRM, ENCFF971REB 1280895 ENCODE Processing Pipeline d0243b512e7de5e82dafe867edbd7b00 https://www.encodeproject.org/files/ENCFF787INH/@@download/ENCFF787INH.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF841WGP bam unfiltered alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWP, ENCFF018NEO 1592797186 ENCODE Processing Pipeline dc3379f170f72d65a5f553bbea4abe97 https://www.encodeproject.org/files/ENCFF841WGP/@@download/ENCFF841WGP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF548PJI bam alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWP, ENCFF018NEO 1056475976 ENCODE Processing Pipeline 421dd65a7dbffcda18927e0bf7e15569 https://www.encodeproject.org/files/ENCFF548PJI/@@download/ENCFF548PJI.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF362RKX bam unfiltered alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF411DQQ 1028476246 ENCODE Processing Pipeline f413f9a3e096be4ffd0dfe431beba491 https://www.encodeproject.org/files/ENCFF362RKX/@@download/ENCFF362RKX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF867JQI bam alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF411DQQ 767164379 ENCODE Processing Pipeline 42cff60d2eab4db6a742263ab030a793 https://www.encodeproject.org/files/ENCFF867JQI/@@download/ENCFF867JQI.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF539NCX bed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF548PJI, ENCFF749WCS 1475373 ENCODE Processing Pipeline ba5945df2d186f1622cdfdb69cbb49e5 https://www.encodeproject.org/files/ENCFF539NCX/@@download/ENCFF539NCX.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF589WOT bed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF867JQI 1395140 ENCODE Processing Pipeline 434ef5a0c0bce560ff5d69c9aa673fba https://www.encodeproject.org/files/ENCFF589WOT/@@download/ENCFF589WOT.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF058DPX bed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF397HOQ, ENCFF548PJI, ENCFF749WCS, ENCFF867JQI 1201941 ENCODE Processing Pipeline 927ebc4ed6d62dee512f1b1201ac4272 https://www.encodeproject.org/files/ENCFF058DPX/@@download/ENCFF058DPX.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF833YQS bigBed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF539NCX 4482575 ENCODE Processing Pipeline 38aca518d700fc75cf8cfbd88c98f36d https://www.encodeproject.org/files/ENCFF833YQS/@@download/ENCFF833YQS.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF187DMZ bigBed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF589WOT 4168311 ENCODE Processing Pipeline a25e7257216678e4745fb181147f96d8 https://www.encodeproject.org/files/ENCFF187DMZ/@@download/ENCFF187DMZ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF184JGP bigWig signal p-value ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF548PJI, ENCFF749WCS 477117336 ENCODE Processing Pipeline 07a9a63bd62658be09f3834f7a57c1f8 https://www.encodeproject.org/files/ENCFF184JGP/@@download/ENCFF184JGP.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF464RMD bigWig signal p-value ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF867JQI 445535556 ENCODE Processing Pipeline c8d1e37a7460a3bcce17761c77a060e6 https://www.encodeproject.org/files/ENCFF464RMD/@@download/ENCFF464RMD.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF183IVM bigBed narrowPeak peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF058DPX 3630449 ENCODE Processing Pipeline f3476a63ee532b1f3e329858b2fd6d7e https://www.encodeproject.org/files/ENCFF183IVM/@@download/ENCFF183IVM.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF148JOP bigWig signal p-value ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF397HOQ, ENCFF548PJI, ENCFF749WCS, ENCFF867JQI 598472936 ENCODE Processing Pipeline c56814e3bb96ccc16b1ebd71c44fe71a https://www.encodeproject.org/files/ENCFF148JOP/@@download/ENCFF148JOP.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF008YWL bigWig fold change over control ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF548PJI, ENCFF749WCS 476887008 ENCODE Processing Pipeline 22332f99d4cc4e5f5f586b2302f76758 https://www.encodeproject.org/files/ENCFF008YWL/@@download/ENCFF008YWL.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF513WPF bigWig fold change over control ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF867JQI 427003099 ENCODE Processing Pipeline 87b307a9ec9a6f8307c1a5061f3857e6 https://www.encodeproject.org/files/ENCFF513WPF/@@download/ENCFF513WPF.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF447LGJ bigWig fold change over control ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF397HOQ, ENCFF548PJI, ENCFF749WCS, ENCFF867JQI 717071564 ENCODE Processing Pipeline 90815d6260911698ecc20526acadc763 https://www.encodeproject.org/files/ENCFF447LGJ/@@download/ENCFF447LGJ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF468ZXG bed narrowPeak replicated peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF058DPX, ENCFF539NCX, ENCFF589WOT 1293942 ENCODE Processing Pipeline b62c43ca9422e2da628cf4ef365c0c4d https://www.encodeproject.org/files/ENCFF468ZXG/@@download/ENCFF468ZXG.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF628UPW bigBed narrowPeak replicated peaks ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF468ZXG 2998837 ENCODE Processing Pipeline 5fa8d3fb7c2221887d6a5561095cdf21 https://www.encodeproject.org/files/ENCFF628UPW/@@download/ENCFF628UPW.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF820LNT fastq reads ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 2179094232 Bing Ren, UCSD ea6f1cbff9bc81d37fd0bc671000a2ef SRA:SRR3651802 https://www.encodeproject.org/files/ENCFF820LNT/@@download/ENCFF820LNT.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released inconsistent platforms, control low read depth ENCFF050XVW fastq reads ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 2103038306 Bing Ren, UCSD de30700ee0c8a3d13a646aa4edc4ed32 SRA:SRR3651801 https://www.encodeproject.org/files/ENCFF050XVW/@@download/ENCFF050XVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released inconsistent platforms, control low read depth ENCFF081SHC bam alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF050XVW, ENCFF806TVZ 1099041888 ENCODE Processing Pipeline 5de1075332abf7be0bfe483b72b24d13 https://www.encodeproject.org/files/ENCFF081SHC/@@download/ENCFF081SHC.bam mm10-minimal archived inconsistent platforms, control low read depth ENCFF053EMW bam alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF806TVZ, ENCFF820LNT 1058345317 ENCODE Processing Pipeline 3a3b117ab121dc509f6a8310acc1a660 https://www.encodeproject.org/files/ENCFF053EMW/@@download/ENCFF053EMW.bam mm10-minimal archived inconsistent platforms, control low read depth ENCFF750JAT bigBed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF144ARZ 1050970 ENCODE Processing Pipeline 281025f2d2bd59a83159f5a7426837dc https://www.encodeproject.org/files/ENCFF750JAT/@@download/ENCFF750JAT.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF121LJY bigWig signal p-value ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF081SHC, ENCFF314ZXJ 500299600 ENCODE Processing Pipeline 262ebc17a0c4779c37b0a7c49e65ea0f https://www.encodeproject.org/files/ENCFF121LJY/@@download/ENCFF121LJY.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF371SXI bigBed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF555CNB 1885646 ENCODE Processing Pipeline 4e77a5de6bca920895ebc51aff3840fe https://www.encodeproject.org/files/ENCFF371SXI/@@download/ENCFF371SXI.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF144ARZ bed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF081SHC, ENCFF314ZXJ 442801 ENCODE Processing Pipeline c771b7d511208e8582e2a05ef0c52fcd https://www.encodeproject.org/files/ENCFF144ARZ/@@download/ENCFF144ARZ.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF261BZO bigBed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF146HEY 2204562 ENCODE Processing Pipeline 3bd9aa0fd94ffcad244e6d06aae5d45e https://www.encodeproject.org/files/ENCFF261BZO/@@download/ENCFF261BZO.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF144KMY bigWig signal p-value ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF053EMW, ENCFF082TGD 456977007 ENCODE Processing Pipeline 6d4b2d18f127a3292e86f9d26d8a93f7 https://www.encodeproject.org/files/ENCFF144KMY/@@download/ENCFF144KMY.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF690UPH bigWig fold change over control ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF053EMW, ENCFF082TGD 454791950 ENCODE Processing Pipeline 05df0da2b4b217804775a462428ad5bd https://www.encodeproject.org/files/ENCFF690UPH/@@download/ENCFF690UPH.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF684GTN bigWig fold change over control ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF081SHC, ENCFF314ZXJ 465369882 ENCODE Processing Pipeline 41d838ebe8fbad9202ae98d5f0b9f967 https://www.encodeproject.org/files/ENCFF684GTN/@@download/ENCFF684GTN.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF555CNB bed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF053EMW, ENCFF082TGD 906586 ENCODE Processing Pipeline 538d7d8c52a1a061ac283a7a8ca326cf https://www.encodeproject.org/files/ENCFF555CNB/@@download/ENCFF555CNB.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF146HEY bed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF053EMW, ENCFF081SHC, ENCFF082TGD, ENCFF314ZXJ 867812 ENCODE Processing Pipeline 442a42047cbd027e3c11615ea7e90076 https://www.encodeproject.org/files/ENCFF146HEY/@@download/ENCFF146HEY.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF966WXY bigWig signal p-value ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF053EMW, ENCFF081SHC, ENCFF082TGD, ENCFF314ZXJ 842936601 ENCODE Processing Pipeline d06ef67043faf207230c0ca2b4e98017 https://www.encodeproject.org/files/ENCFF966WXY/@@download/ENCFF966WXY.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF105CXH bigWig fold change over control ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF053EMW, ENCFF081SHC, ENCFF082TGD, ENCFF314ZXJ 930039699 ENCODE Processing Pipeline b2cb62bee266d5c603edcb94b3378414 https://www.encodeproject.org/files/ENCFF105CXH/@@download/ENCFF105CXH.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF304UCF bed narrowPeak replicated peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF144ARZ, ENCFF146HEY, ENCFF555CNB 259352 ENCODE Processing Pipeline 860ba1d21a0ad4ac1479ae642597aa06 https://www.encodeproject.org/files/ENCFF304UCF/@@download/ENCFF304UCF.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF596OZS bigBed narrowPeak replicated peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF304UCF 668263 ENCODE Processing Pipeline c83d3f1ff839da835b9913d7d401cd25 https://www.encodeproject.org/files/ENCFF596OZS/@@download/ENCFF596OZS.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF488VCL bam unfiltered alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF050XVW 2559503576 ENCODE Processing Pipeline 27359511c969786070ac274e7d79b8ef https://www.encodeproject.org/files/ENCFF488VCL/@@download/ENCFF488VCL.bam mm10 released inconsistent platforms, control low read depth ENCFF743HEI bam unfiltered alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF820LNT 2644667034 ENCODE Processing Pipeline 60a4caad61064dcaa82e9539206090fd https://www.encodeproject.org/files/ENCFF743HEI/@@download/ENCFF743HEI.bam mm10 released inconsistent platforms, control low read depth ENCFF485DDP bam alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF050XVW 1098428017 ENCODE Processing Pipeline deaba8d81b60ee07bad4f716e1dcf593 https://www.encodeproject.org/files/ENCFF485DDP/@@download/ENCFF485DDP.bam mm10 released inconsistent platforms, control low read depth ENCFF170JCI bam alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF820LNT 1057678541 ENCODE Processing Pipeline 872734703cde0f4a10a5b82dea5074b5 https://www.encodeproject.org/files/ENCFF170JCI/@@download/ENCFF170JCI.bam mm10 released inconsistent platforms, control low read depth ENCFF290JLS bed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF170JCI, ENCFF615JIE 970632 ENCODE Processing Pipeline 13d20dbc4842afc81e0851f09c87e1ab https://www.encodeproject.org/files/ENCFF290JLS/@@download/ENCFF290JLS.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF576TZV bed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF164ZUK, ENCFF485DDP 482809 ENCODE Processing Pipeline e0aa9f581764d446eab23610d3be854e https://www.encodeproject.org/files/ENCFF576TZV/@@download/ENCFF576TZV.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF259JDC bed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF164ZUK, ENCFF170JCI, ENCFF485DDP, ENCFF615JIE 869301 ENCODE Processing Pipeline 416ce54d0e243ec2d07765b3ac74cd87 https://www.encodeproject.org/files/ENCFF259JDC/@@download/ENCFF259JDC.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF901IHJ bigBed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF290JLS 1999288 ENCODE Processing Pipeline 2f979063e580022b3baf153795a349f5 https://www.encodeproject.org/files/ENCFF901IHJ/@@download/ENCFF901IHJ.bigBed mm10 released inconsistent platforms, control low read depth ENCFF834XQJ bigBed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF576TZV 1130021 ENCODE Processing Pipeline 98120fae684ccff31ff7e507070dd96e https://www.encodeproject.org/files/ENCFF834XQJ/@@download/ENCFF834XQJ.bigBed mm10 released inconsistent platforms, control low read depth ENCFF463MPF bigWig signal p-value ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF170JCI, ENCFF615JIE 517961087 ENCODE Processing Pipeline bf7cd0e750ec4bfb137079b496558e94 https://www.encodeproject.org/files/ENCFF463MPF/@@download/ENCFF463MPF.bigWig mm10 released inconsistent platforms, control low read depth ENCFF031LAP bigBed narrowPeak peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF259JDC 2210730 ENCODE Processing Pipeline 8c7ea139ed7edc62d486f385328c48ae https://www.encodeproject.org/files/ENCFF031LAP/@@download/ENCFF031LAP.bigBed mm10 released inconsistent platforms, control low read depth ENCFF056IDP bigWig signal p-value ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF164ZUK, ENCFF485DDP 598164854 ENCODE Processing Pipeline 866af73bbc0bff3c9c07677bc9d34fd9 https://www.encodeproject.org/files/ENCFF056IDP/@@download/ENCFF056IDP.bigWig mm10 released inconsistent platforms, control low read depth ENCFF051XBE bigWig signal p-value ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF164ZUK, ENCFF170JCI, ENCFF485DDP, ENCFF615JIE 904312823 ENCODE Processing Pipeline 703b06fb9f452619a5f5fe8281e7a307 https://www.encodeproject.org/files/ENCFF051XBE/@@download/ENCFF051XBE.bigWig mm10 released inconsistent platforms, control low read depth ENCFF187PTA bigWig fold change over control ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF170JCI, ENCFF615JIE 483371521 ENCODE Processing Pipeline 8132c6c26a400f5c673a525a08bf38fd https://www.encodeproject.org/files/ENCFF187PTA/@@download/ENCFF187PTA.bigWig mm10 released inconsistent platforms, control low read depth ENCFF591YJS bigWig fold change over control ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF164ZUK, ENCFF485DDP 505113232 ENCODE Processing Pipeline f7aa868ad4233ca6a3b14e5b82ac7ef7 https://www.encodeproject.org/files/ENCFF591YJS/@@download/ENCFF591YJS.bigWig mm10 released inconsistent platforms, control low read depth ENCFF499LUF bigWig fold change over control ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF164ZUK, ENCFF170JCI, ENCFF485DDP, ENCFF615JIE 1063784455 ENCODE Processing Pipeline 3b84a211f1605b73bf14776fb5b5eee0 https://www.encodeproject.org/files/ENCFF499LUF/@@download/ENCFF499LUF.bigWig mm10 released inconsistent platforms, control low read depth ENCFF441CYS bed narrowPeak replicated peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF259JDC, ENCFF290JLS, ENCFF576TZV 267108 ENCODE Processing Pipeline fd9f75ac2246377fc520f130ebf1a13e https://www.encodeproject.org/files/ENCFF441CYS/@@download/ENCFF441CYS.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF457IBV bigBed narrowPeak replicated peaks ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF441CYS 684330 ENCODE Processing Pipeline 08a2dfdd58916362938f2f7cc4f50218 https://www.encodeproject.org/files/ENCFF457IBV/@@download/ENCFF457IBV.bigBed mm10 released inconsistent platforms, control low read depth ENCFF002BWE fastq reads ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1354563633 Bing Ren, UCSD 40758764814de5f2d2a19ef411c6c312 SRA:SRR3653129 https://www.encodeproject.org/files/ENCFF002BWE/@@download/ENCFF002BWE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF002BWB fastq reads ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1382169776 Bing Ren, UCSD 3ca7fb2d09f8854c927f3084fe173908 SRA:SRR3653128 https://www.encodeproject.org/files/ENCFF002BWB/@@download/ENCFF002BWB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXQ/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF604RVD bam alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWE, ENCFF806TVZ 1150797260 ENCODE Processing Pipeline eb6557681d068608ce6b33b031244fe0 https://www.encodeproject.org/files/ENCFF604RVD/@@download/ENCFF604RVD.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF463OSC bam alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWB, ENCFF806TVZ 1071923894 ENCODE Processing Pipeline 1da4c542476bd43f43c7bd53f7cee766 https://www.encodeproject.org/files/ENCFF463OSC/@@download/ENCFF463OSC.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF374MBW bed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF604RVD, ENCFF731DCA 1664479 ENCODE Processing Pipeline cac7d7b403ab84ee79cb842fedc0ebed https://www.encodeproject.org/files/ENCFF374MBW/@@download/ENCFF374MBW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF869ZJZ bed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF463OSC, ENCFF731DCA 1836640 ENCODE Processing Pipeline fd342a305d092a52d7d50bea2be31536 https://www.encodeproject.org/files/ENCFF869ZJZ/@@download/ENCFF869ZJZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF388WSV bigBed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF869ZJZ 5123802 ENCODE Processing Pipeline 9d1ff0e490468b796668e98a0e0f1305 https://www.encodeproject.org/files/ENCFF388WSV/@@download/ENCFF388WSV.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF426JBR bigWig signal p-value ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF604RVD, ENCFF731DCA 422053311 ENCODE Processing Pipeline b4cad9f1007481cffb7dbdbabeca4558 https://www.encodeproject.org/files/ENCFF426JBR/@@download/ENCFF426JBR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF453JCZ bigBed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF642WNW 4112877 ENCODE Processing Pipeline 6f83666c8b3ec81e67a15b98bd8271d0 https://www.encodeproject.org/files/ENCFF453JCZ/@@download/ENCFF453JCZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF642WNW bed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF463OSC, ENCFF604RVD, ENCFF731DCA 1457233 ENCODE Processing Pipeline 4941a854a439d9e0af3351b42b77b86f https://www.encodeproject.org/files/ENCFF642WNW/@@download/ENCFF642WNW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF805CES bigBed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF374MBW 4687129 ENCODE Processing Pipeline b0e6a09e46c2f98f4de42f966b535a79 https://www.encodeproject.org/files/ENCFF805CES/@@download/ENCFF805CES.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF503QWU bigWig signal p-value ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF463OSC, ENCFF604RVD, ENCFF731DCA 534935034 ENCODE Processing Pipeline c3f6772d6e47d55859d149a6908f2b4e https://www.encodeproject.org/files/ENCFF503QWU/@@download/ENCFF503QWU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF086MEP bigWig signal p-value ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF463OSC, ENCFF731DCA 480696278 ENCODE Processing Pipeline b45bd08732c2643e4bb5da6975e7b059 https://www.encodeproject.org/files/ENCFF086MEP/@@download/ENCFF086MEP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF201IUB bigWig fold change over control ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF604RVD, ENCFF731DCA 482145580 ENCODE Processing Pipeline 859b7746bd91bd62189c5da0e2d7a74a https://www.encodeproject.org/files/ENCFF201IUB/@@download/ENCFF201IUB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF208YIQ bigWig fold change over control ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF463OSC, ENCFF731DCA 463744762 ENCODE Processing Pipeline 68e1ca5656e813b649e872f1940a8def https://www.encodeproject.org/files/ENCFF208YIQ/@@download/ENCFF208YIQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF218DIU bigWig fold change over control ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF463OSC, ENCFF604RVD, ENCFF731DCA 763168391 ENCODE Processing Pipeline 7bb1e63ad71ceb1aa557a82954411c54 https://www.encodeproject.org/files/ENCFF218DIU/@@download/ENCFF218DIU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF116HZK bed narrowPeak replicated peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF374MBW, ENCFF642WNW, ENCFF869ZJZ 1852314 ENCODE Processing Pipeline cb28ffe9e47b935255172439257e4930 https://www.encodeproject.org/files/ENCFF116HZK/@@download/ENCFF116HZK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF320VRS bigBed narrowPeak replicated peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF116HZK 3840411 ENCODE Processing Pipeline 2afbd76cb7255e4dd9ffd649c1638f42 https://www.encodeproject.org/files/ENCFF320VRS/@@download/ENCFF320VRS.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF792VUR bam unfiltered alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWB, ENCFF018NEO 1694390807 ENCODE Processing Pipeline 888e85a4cb2df7f68d3effc13fb37166 https://www.encodeproject.org/files/ENCFF792VUR/@@download/ENCFF792VUR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF552AUZ bam unfiltered alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWE, ENCFF018NEO 1691992749 ENCODE Processing Pipeline 926db3781f9f832fdbd5f52cacbec74d https://www.encodeproject.org/files/ENCFF552AUZ/@@download/ENCFF552AUZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF716BZP bam alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWE, ENCFF018NEO 1150565336 ENCODE Processing Pipeline 6cec6a3cc69be9d5d13931dc873e1d85 https://www.encodeproject.org/files/ENCFF716BZP/@@download/ENCFF716BZP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF095YRX bam alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWB, ENCFF018NEO 1071713309 ENCODE Processing Pipeline 6f239c3086416714dc4cd4dc95d8cbae https://www.encodeproject.org/files/ENCFF095YRX/@@download/ENCFF095YRX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF255GHM bed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF716BZP 1666124 ENCODE Processing Pipeline 2821de2e5fe959c7f87852fa40dd4004 https://www.encodeproject.org/files/ENCFF255GHM/@@download/ENCFF255GHM.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF441JZQ bed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095YRX, ENCFF276TCT 1266422 ENCODE Processing Pipeline ed3d1f394cf13db97cd64ecde0c308f4 https://www.encodeproject.org/files/ENCFF441JZQ/@@download/ENCFF441JZQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF385OLA bed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095YRX, ENCFF276TCT, ENCFF461JUO, ENCFF716BZP 1458522 ENCODE Processing Pipeline 5c3b50bd0b563d66a41f5d491756e943 https://www.encodeproject.org/files/ENCFF385OLA/@@download/ENCFF385OLA.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF484SUW bigBed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF255GHM 4691215 ENCODE Processing Pipeline a9b5f1dcb521402bed7d5431de4e8738 https://www.encodeproject.org/files/ENCFF484SUW/@@download/ENCFF484SUW.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF076AUT bigBed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF441JZQ 3654822 ENCODE Processing Pipeline e304021d71fa15fcffb463d3504c6148 https://www.encodeproject.org/files/ENCFF076AUT/@@download/ENCFF076AUT.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF321CTC bigBed narrowPeak peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF385OLA 4115473 ENCODE Processing Pipeline 7c3d51a57944d2c1bf98b909a4c1673d https://www.encodeproject.org/files/ENCFF321CTC/@@download/ENCFF321CTC.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF202LBW bigWig signal p-value ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF716BZP 470067087 ENCODE Processing Pipeline 080086de271b9e82e026fab5bae8bc01 https://www.encodeproject.org/files/ENCFF202LBW/@@download/ENCFF202LBW.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF646CMH bigWig signal p-value ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095YRX, ENCFF276TCT 261669980 ENCODE Processing Pipeline 7d5a460811106022a1cc2906556c4c70 https://www.encodeproject.org/files/ENCFF646CMH/@@download/ENCFF646CMH.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF951AHC bigWig signal p-value ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095YRX, ENCFF276TCT, ENCFF461JUO, ENCFF716BZP 534963052 ENCODE Processing Pipeline 034525d939154e0950997eb2f3b01020 https://www.encodeproject.org/files/ENCFF951AHC/@@download/ENCFF951AHC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF362EYS bigWig fold change over control ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF716BZP 482140130 ENCODE Processing Pipeline 8c578dc9963da7a5071a72fa33f8c6a1 https://www.encodeproject.org/files/ENCFF362EYS/@@download/ENCFF362EYS.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF478MOV bigWig fold change over control ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095YRX, ENCFF276TCT 360924597 ENCODE Processing Pipeline 96d022c80577207b98a4f17d93c60680 https://www.encodeproject.org/files/ENCFF478MOV/@@download/ENCFF478MOV.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF801FFG bigWig fold change over control ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095YRX, ENCFF276TCT, ENCFF461JUO, ENCFF716BZP 762529668 ENCODE Processing Pipeline d2258e56a11e79bccabdc4fb5dc92efa https://www.encodeproject.org/files/ENCFF801FFG/@@download/ENCFF801FFG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF153DSU bed narrowPeak replicated peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF255GHM, ENCFF385OLA, ENCFF441JZQ 1780493 ENCODE Processing Pipeline e17512178df3bfa3d1c0b0f47888233d https://www.encodeproject.org/files/ENCFF153DSU/@@download/ENCFF153DSU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF243BCA bigBed narrowPeak replicated peaks ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153DSU 3705568 ENCODE Processing Pipeline d3f2cad156a92f86ebcba6a8b7d38cf8 https://www.encodeproject.org/files/ENCFF243BCA/@@download/ENCFF243BCA.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF002BVU fastq reads ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 36 single-ended 1252050251 Bing Ren, UCSD 0f2a05154ff2acadd9c07d68a0529178 SRA:SRR3651811 https://www.encodeproject.org/files/ENCFF002BVU/@@download/ENCFF002BVU.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVY fastq reads ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 3530670698 Bing Ren, UCSD 97f314cbc0743234afedf52604276cdd SRA:SRR3651813 https://www.encodeproject.org/files/ENCFF002BVY/@@download/ENCFF002BVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUW/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVQ fastq reads ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 1159903181 Bing Ren, UCSD 68f9c4a7cb69592f0aa8f05c7faab72e SRA:SRR3651812 https://www.encodeproject.org/files/ENCFF002BVQ/@@download/ENCFF002BVQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUV/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF365XPG bam alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002BVY, ENCFF806TVZ 1730335299 ENCODE Processing Pipeline 491ea702a98b5cf5e6a2eb893e821291 https://www.encodeproject.org/files/ENCFF365XPG/@@download/ENCFF365XPG.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF838MLB bam alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002BVQ, ENCFF002BVU, ENCFF806TVZ 1412034616 ENCODE Processing Pipeline 7b54a58dbf2638ffa91569cd9c5f84ee https://www.encodeproject.org/files/ENCFF838MLB/@@download/ENCFF838MLB.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF774FIQ bed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF033BGX, ENCFF838MLB, ENCFF972ZKQ 169105 ENCODE Processing Pipeline b5beb5e4ede9dead08e4de23440d4153 https://www.encodeproject.org/files/ENCFF774FIQ/@@download/ENCFF774FIQ.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF552MSN bigBed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF774FIQ 397750 ENCODE Processing Pipeline 73b6dbebe03c5b112f33bcec81100484 https://www.encodeproject.org/files/ENCFF552MSN/@@download/ENCFF552MSN.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF230GCW bigBed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF067KHN 1015014 ENCODE Processing Pipeline 8af437cf3b7581a36dd4554c6bd46a1f https://www.encodeproject.org/files/ENCFF230GCW/@@download/ENCFF230GCW.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF681LPO bed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF033BGX, ENCFF365XPG, ENCFF838MLB, ENCFF972ZKQ 241640 ENCODE Processing Pipeline 4ec9df0f4be581d2550543a6804284c9 https://www.encodeproject.org/files/ENCFF681LPO/@@download/ENCFF681LPO.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF067KHN bed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF033BGX, ENCFF365XPG, ENCFF972ZKQ 440947 ENCODE Processing Pipeline 714daa127ab0882cadbeb6dac7c51d8b https://www.encodeproject.org/files/ENCFF067KHN/@@download/ENCFF067KHN.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF298GRO bigBed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF681LPO 594075 ENCODE Processing Pipeline 7ee80267ca2b78544d3a3532fed5e4df https://www.encodeproject.org/files/ENCFF298GRO/@@download/ENCFF298GRO.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF358QMC bigWig signal p-value ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF033BGX, ENCFF838MLB, ENCFF972ZKQ 517248101 ENCODE Processing Pipeline 4cedaffd94e37c5e87a00fa09b13c2a8 https://www.encodeproject.org/files/ENCFF358QMC/@@download/ENCFF358QMC.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF820ZQK bigWig signal p-value ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF033BGX, ENCFF365XPG, ENCFF972ZKQ 522635871 ENCODE Processing Pipeline 774d4c73e58c946e770d858106b69932 https://www.encodeproject.org/files/ENCFF820ZQK/@@download/ENCFF820ZQK.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF965KNV bigWig signal p-value ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF033BGX, ENCFF365XPG, ENCFF838MLB, ENCFF972ZKQ 492188269 ENCODE Processing Pipeline d5fab47bec8354983f2c60f0456cd616 https://www.encodeproject.org/files/ENCFF965KNV/@@download/ENCFF965KNV.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF468WKE bigWig fold change over control ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF033BGX, ENCFF838MLB, ENCFF972ZKQ 561698404 ENCODE Processing Pipeline c58f18effa4bb3c7fd9c58bbddc7bf4e https://www.encodeproject.org/files/ENCFF468WKE/@@download/ENCFF468WKE.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF214EDQ bigWig fold change over control ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF033BGX, ENCFF365XPG, ENCFF972ZKQ 640207920 ENCODE Processing Pipeline eb8d4a4e338a804b078f415019b0804d https://www.encodeproject.org/files/ENCFF214EDQ/@@download/ENCFF214EDQ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF310JAD bigBed narrowPeak replicated peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF552FCV 376271 ENCODE Processing Pipeline 3fc8b698843074e6ba669ae69534debd https://www.encodeproject.org/files/ENCFF310JAD/@@download/ENCFF310JAD.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF517KQQ bigWig fold change over control ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF033BGX, ENCFF365XPG, ENCFF838MLB, ENCFF972ZKQ 953150651 ENCODE Processing Pipeline be58f2df2a67a0e8892c9a0eb8d2fd22 https://www.encodeproject.org/files/ENCFF517KQQ/@@download/ENCFF517KQQ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF552FCV bed narrowPeak replicated peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF067KHN, ENCFF681LPO, ENCFF774FIQ 147739 ENCODE Processing Pipeline c2e9e40b68f6a3b22902b295c98b3b88 https://www.encodeproject.org/files/ENCFF552FCV/@@download/ENCFF552FCV.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF681MTL bam unfiltered alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVQ, ENCFF002BVU, ENCFF018NEO 3044960017 ENCODE Processing Pipeline 9f5f8dbe5959df18fc57cd9a2aefe82f https://www.encodeproject.org/files/ENCFF681MTL/@@download/ENCFF681MTL.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF420RCI bam unfiltered alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVY, ENCFF018NEO 4397919090 ENCODE Processing Pipeline ca8acfdfcfaa51104852bdba4b7e9499 https://www.encodeproject.org/files/ENCFF420RCI/@@download/ENCFF420RCI.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF295QBQ bam alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVQ, ENCFF002BVU, ENCFF018NEO 1411320762 ENCODE Processing Pipeline 0d4647faba78a1faab06faf8d64de40d https://www.encodeproject.org/files/ENCFF295QBQ/@@download/ENCFF295QBQ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF510WLW bam alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVY, ENCFF018NEO 1729731973 ENCODE Processing Pipeline 17e14a7cf895deab98f94282f68df33d https://www.encodeproject.org/files/ENCFF510WLW/@@download/ENCFF510WLW.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF729FEU bed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF295QBQ, ENCFF437LOC, ENCFF468BIZ 191276 ENCODE Processing Pipeline afcc1de9ba2f14b2295942ae3e655081 https://www.encodeproject.org/files/ENCFF729FEU/@@download/ENCFF729FEU.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF445NZJ bed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF510WLW 463201 ENCODE Processing Pipeline da2d793e8191cb19aaafa80664cea913 https://www.encodeproject.org/files/ENCFF445NZJ/@@download/ENCFF445NZJ.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF016DVL bed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF295QBQ, ENCFF437LOC, ENCFF468BIZ, ENCFF510WLW 230328 ENCODE Processing Pipeline 274511db4189d4e20985f86c5bc20d35 https://www.encodeproject.org/files/ENCFF016DVL/@@download/ENCFF016DVL.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF766MWN bigBed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF729FEU 437119 ENCODE Processing Pipeline c2aafd96a081c84726c46434aa65aa8b https://www.encodeproject.org/files/ENCFF766MWN/@@download/ENCFF766MWN.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF103RWO bigBed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF445NZJ 1054711 ENCODE Processing Pipeline c5d5ff902c027fe3b30a42af937be6bd https://www.encodeproject.org/files/ENCFF103RWO/@@download/ENCFF103RWO.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF009GBY bigBed narrowPeak peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF016DVL 572933 ENCODE Processing Pipeline 3a3c6d1089c0eb3ad01632ec3070d04b https://www.encodeproject.org/files/ENCFF009GBY/@@download/ENCFF009GBY.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF127XNJ bigWig signal p-value ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF295QBQ, ENCFF437LOC, ENCFF468BIZ 512413221 ENCODE Processing Pipeline 312f5e13e062ab88605106246ca39330 https://www.encodeproject.org/files/ENCFF127XNJ/@@download/ENCFF127XNJ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF003FYI bigWig signal p-value ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF510WLW 510464173 ENCODE Processing Pipeline 2ca7505a19c75925c9c837af605269fe https://www.encodeproject.org/files/ENCFF003FYI/@@download/ENCFF003FYI.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF266OOX bigWig signal p-value ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF295QBQ, ENCFF437LOC, ENCFF468BIZ, ENCFF510WLW 498698931 ENCODE Processing Pipeline 3fb49c2fe659605ab282eb76c4a22d82 https://www.encodeproject.org/files/ENCFF266OOX/@@download/ENCFF266OOX.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF975TIV bigWig fold change over control ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF295QBQ, ENCFF437LOC, ENCFF468BIZ 549342357 ENCODE Processing Pipeline 1a195364a6515b8ab646d152aafeebe5 https://www.encodeproject.org/files/ENCFF975TIV/@@download/ENCFF975TIV.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF864UFT bigWig fold change over control ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF510WLW 632230722 ENCODE Processing Pipeline 4770904850a1bcd4b7ff5152134d76af https://www.encodeproject.org/files/ENCFF864UFT/@@download/ENCFF864UFT.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF402XZO bigWig fold change over control ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF295QBQ, ENCFF437LOC, ENCFF468BIZ, ENCFF510WLW 962229798 ENCODE Processing Pipeline 106a3b71290cc42990fb4f94f7ff1f92 https://www.encodeproject.org/files/ENCFF402XZO/@@download/ENCFF402XZO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF828SQE bed narrowPeak replicated peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF016DVL, ENCFF445NZJ, ENCFF729FEU 159835 ENCODE Processing Pipeline 45bdda49c606f3c6d1addec3bb2ba337 https://www.encodeproject.org/files/ENCFF828SQE/@@download/ENCFF828SQE.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF148KOE bigBed narrowPeak replicated peaks ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF828SQE 400830 ENCODE Processing Pipeline 7833b4b35ab08736458cfc371fbe7351 https://www.encodeproject.org/files/ENCFF148KOE/@@download/ENCFF148KOE.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF091BHO fastq reads ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 50 single-ended 1771505302 Bing Ren, UCSD fce521a8ee7c1737e2b96cde9ad0d776 SRA:SRR3652375 https://www.encodeproject.org/files/ENCFF091BHO/@@download/ENCFF091BHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF118HZT fastq reads ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 2 50 single-ended 951059505 Bing Ren, UCSD 234536ea2e57049a118c36c2b2516ba2 SRA:SRR3652376 https://www.encodeproject.org/files/ENCFF118HZT/@@download/ENCFF118HZT.fastq.gz Illumina HiSeq 2500 /files/ENCFF761WLY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF327BUW fastq reads ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 50 single-ended 2212358814 Bing Ren, UCSD 866c3a4dbaca3cf8bcd0efdb7b7f8c44 SRA:SRR3652374 https://www.encodeproject.org/files/ENCFF327BUW/@@download/ENCFF327BUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF624YYW bam alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF327BUW, ENCFF806TVZ 1219338664 ENCODE Processing Pipeline eec88dd131e654b8f8c645d3656b21fe https://www.encodeproject.org/files/ENCFF624YYW/@@download/ENCFF624YYW.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF679CVE bam alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF091BHO, ENCFF118HZT, ENCFF806TVZ 1495019243 ENCODE Processing Pipeline 2c63e037e7e67d31a6309fe672016d65 https://www.encodeproject.org/files/ENCFF679CVE/@@download/ENCFF679CVE.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF351YRV bed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF309QAZ, ENCFF624YYW 717894 ENCODE Processing Pipeline 269909cde26afbf666b88ebcbb044787 https://www.encodeproject.org/files/ENCFF351YRV/@@download/ENCFF351YRV.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF745OAZ bigWig signal p-value ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF309QAZ, ENCFF624YYW 462527135 ENCODE Processing Pipeline d74556af095be7e9d9520e99d68ff001 https://www.encodeproject.org/files/ENCFF745OAZ/@@download/ENCFF745OAZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF776FAF bigWig signal p-value ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF624YYW, ENCFF679CVE 886632470 ENCODE Processing Pipeline d2911731175e6c3f855c83e7d6924f2e https://www.encodeproject.org/files/ENCFF776FAF/@@download/ENCFF776FAF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF337TDJ bed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF015ICF, ENCFF679CVE 580078 ENCODE Processing Pipeline db56d47a372fa4c63dbc90d893507ebd https://www.encodeproject.org/files/ENCFF337TDJ/@@download/ENCFF337TDJ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF929ADQ bigWig fold change over control ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF015ICF, ENCFF679CVE 582531700 ENCODE Processing Pipeline b5986bb57c2a78456426bc8c958a5e12 https://www.encodeproject.org/files/ENCFF929ADQ/@@download/ENCFF929ADQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF646ZIL bed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF624YYW, ENCFF679CVE 1041312 ENCODE Processing Pipeline b12b65ffba99a321b2341d1743621b53 https://www.encodeproject.org/files/ENCFF646ZIL/@@download/ENCFF646ZIL.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF657QIE bigBed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF351YRV 1603422 ENCODE Processing Pipeline 263749cb2eea4b9bc36a21e858333a97 https://www.encodeproject.org/files/ENCFF657QIE/@@download/ENCFF657QIE.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF864XEN bigWig fold change over control ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF624YYW, ENCFF679CVE 1000940964 ENCODE Processing Pipeline 3eeb1e9032c822b55487f28635008211 https://www.encodeproject.org/files/ENCFF864XEN/@@download/ENCFF864XEN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF566ALC bigWig signal p-value ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF015ICF, ENCFF679CVE 588195346 ENCODE Processing Pipeline d0bcd056e73dc89a72429335648da262 https://www.encodeproject.org/files/ENCFF566ALC/@@download/ENCFF566ALC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF341IQL bigBed narrowPeak replicated peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF485OOZ 807701 ENCODE Processing Pipeline 6c56fe547e19eea85649eb322138b6e4 https://www.encodeproject.org/files/ENCFF341IQL/@@download/ENCFF341IQL.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF305LIQ bigBed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF337TDJ 1338485 ENCODE Processing Pipeline ecae059d45447868b06577810e80152b https://www.encodeproject.org/files/ENCFF305LIQ/@@download/ENCFF305LIQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF772PRI bigBed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF646ZIL 2125939 ENCODE Processing Pipeline 62f513a6ce483ac6ee5b2a2a76329618 https://www.encodeproject.org/files/ENCFF772PRI/@@download/ENCFF772PRI.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF343EUY bigWig fold change over control ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF309QAZ, ENCFF624YYW 530178006 ENCODE Processing Pipeline 9302be594286c81b330f809d4ccfac37 https://www.encodeproject.org/files/ENCFF343EUY/@@download/ENCFF343EUY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF485OOZ bed narrowPeak replicated peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF337TDJ, ENCFF351YRV, ENCFF646ZIL 307517 ENCODE Processing Pipeline 32c232ce7d672dba14c79caa45cbef4e https://www.encodeproject.org/files/ENCFF485OOZ/@@download/ENCFF485OOZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF567HZG bam unfiltered alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF327BUW 2681161507 ENCODE Processing Pipeline e5b00e394a227cb841bfad9f191f0175 https://www.encodeproject.org/files/ENCFF567HZG/@@download/ENCFF567HZG.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF716VYB bam unfiltered alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF091BHO, ENCFF118HZT 3293763951 ENCODE Processing Pipeline b54b8cb62eb2b4f4e5f81cb26fa722a4 https://www.encodeproject.org/files/ENCFF716VYB/@@download/ENCFF716VYB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF621ESF bam alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF091BHO, ENCFF118HZT 1494264265 ENCODE Processing Pipeline dbfb86eeb853c65f0ee90a956f98fe48 https://www.encodeproject.org/files/ENCFF621ESF/@@download/ENCFF621ESF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF328ITH bam alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF327BUW 1218649586 ENCODE Processing Pipeline 9e7e874e7f4a90e6c094c9055f9c7b9d https://www.encodeproject.org/files/ENCFF328ITH/@@download/ENCFF328ITH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF370EHR bigWig signal p-value ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF098HSW, ENCFF328ITH 553056542 ENCODE Processing Pipeline 73c500589a8d6f7d09f6e1613997f9e7 https://www.encodeproject.org/files/ENCFF370EHR/@@download/ENCFF370EHR.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF929AZS bed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF098HSW, ENCFF328ITH 720580 ENCODE Processing Pipeline 2bf0859f07474e8a60282ecb0e2d31ee https://www.encodeproject.org/files/ENCFF929AZS/@@download/ENCFF929AZS.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF596MIL bigBed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF929AZS 1609243 ENCODE Processing Pipeline ebb31d4f4f8829b69093eec5b98c35fd https://www.encodeproject.org/files/ENCFF596MIL/@@download/ENCFF596MIL.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF487OTN bed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF621ESF, ENCFF805AXD 570342 ENCODE Processing Pipeline 9174add920a7b9820ba81b061de8585d https://www.encodeproject.org/files/ENCFF487OTN/@@download/ENCFF487OTN.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF682EFF bigWig signal p-value ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF621ESF, ENCFF805AXD 633120120 ENCODE Processing Pipeline 0b7745323ea3f3f0c8b015a441530f10 https://www.encodeproject.org/files/ENCFF682EFF/@@download/ENCFF682EFF.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF145ZNH bigWig signal p-value ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF098HSW, ENCFF328ITH, ENCFF621ESF, ENCFF805AXD 902799621 ENCODE Processing Pipeline b351bff3f495b66324f50757b31e80a4 https://www.encodeproject.org/files/ENCFF145ZNH/@@download/ENCFF145ZNH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF182VQN bigBed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF289BWW 2176306 ENCODE Processing Pipeline f4f9d1a467df772a8f10f88fd2897bbb https://www.encodeproject.org/files/ENCFF182VQN/@@download/ENCFF182VQN.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF289BWW bed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF098HSW, ENCFF328ITH, ENCFF621ESF, ENCFF805AXD 1070598 ENCODE Processing Pipeline 2eb30c473ade263df5acdd695835ee94 https://www.encodeproject.org/files/ENCFF289BWW/@@download/ENCFF289BWW.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF629WJW bigBed narrowPeak peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF487OTN 1321119 ENCODE Processing Pipeline 36e427f0ffa5b0fd4259112b6ebda3bc https://www.encodeproject.org/files/ENCFF629WJW/@@download/ENCFF629WJW.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF125RLP bigWig fold change over control ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF098HSW, ENCFF328ITH 529372330 ENCODE Processing Pipeline 7e85a2147fdd534dd4306bba5af41f35 https://www.encodeproject.org/files/ENCFF125RLP/@@download/ENCFF125RLP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF113OCK bigBed narrowPeak replicated peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF117MAV 649171 ENCODE Processing Pipeline 3cbf88a22a8f3a081e1fa0a35ebc483d https://www.encodeproject.org/files/ENCFF113OCK/@@download/ENCFF113OCK.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF490ZDV bigWig fold change over control ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF621ESF, ENCFF805AXD 591285050 ENCODE Processing Pipeline 6c1f0c3a62598da35ad61fca90e6843b https://www.encodeproject.org/files/ENCFF490ZDV/@@download/ENCFF490ZDV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF987UOT bigWig fold change over control ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF098HSW, ENCFF328ITH, ENCFF621ESF, ENCFF805AXD 1004809700 ENCODE Processing Pipeline a8fe13fb36c87bdad845009bb1c01f0c https://www.encodeproject.org/files/ENCFF987UOT/@@download/ENCFF987UOT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF117MAV bed narrowPeak replicated peaks ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF289BWW, ENCFF487OTN, ENCFF929AZS 242051 ENCODE Processing Pipeline 16d1e61b546aceea9a13d19393962e9d https://www.encodeproject.org/files/ENCFF117MAV/@@download/ENCFF117MAV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF115BHE fastq reads ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2376410528 Bing Ren, UCSD 6721bbf2879e37ad9bae252a55aed8a8 SRA:SRR3651661 https://www.encodeproject.org/files/ENCFF115BHE/@@download/ENCFF115BHE.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/ released sequencing runs labeled as technical replicates ENCFF128OTX fastq reads ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1870437824 Bing Ren, UCSD e2f73579372bb73b71586e5e394f846f SRA:SRR3651662 https://www.encodeproject.org/files/ENCFF128OTX/@@download/ENCFF128OTX.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released sequencing runs labeled as technical replicates ENCFF861GZT fastq reads ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 337717852 Bing Ren, UCSD 6214f54dc786e52292a0d20b3ed06e8d SRA:SRR3651663 https://www.encodeproject.org/files/ENCFF861GZT/@@download/ENCFF861GZT.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released sequencing runs labeled as technical replicates ENCFF063SHI bam alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF128OTX, ENCFF806TVZ, ENCFF861GZT 2293238925 ENCODE Processing Pipeline a7358372fd9f60ab9c2fc627bb44bcaa https://www.encodeproject.org/files/ENCFF063SHI/@@download/ENCFF063SHI.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF394WOA bam alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF115BHE, ENCFF806TVZ 2421905763 ENCODE Processing Pipeline 55e3f99e1a6a4baac11cda3fbf7665f1 https://www.encodeproject.org/files/ENCFF394WOA/@@download/ENCFF394WOA.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF108ZJA bigBed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF860KCP 6133538 ENCODE Processing Pipeline ad4ef41e67fcd14ef995ac818a915bbe https://www.encodeproject.org/files/ENCFF108ZJA/@@download/ENCFF108ZJA.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF860KCP bed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF394WOA, ENCFF950FXV 2951235 ENCODE Processing Pipeline 838f9149864a048c2fde6c6880de3e80 https://www.encodeproject.org/files/ENCFF860KCP/@@download/ENCFF860KCP.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF933WVD bed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF063SHI, ENCFF670KZF, ENCFF950FXV 2838146 ENCODE Processing Pipeline 7dd2abf45e3ec9dbe53baeafb1604816 https://www.encodeproject.org/files/ENCFF933WVD/@@download/ENCFF933WVD.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF373LJN bed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF063SHI, ENCFF394WOA, ENCFF670KZF, ENCFF950FXV 3682106 ENCODE Processing Pipeline 09ac25008e6fada29d39f2bf2af8eb29 https://www.encodeproject.org/files/ENCFF373LJN/@@download/ENCFF373LJN.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF680LNX bigBed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF373LJN 9664637 ENCODE Processing Pipeline c512097118e5f185bd7790901df8e166 https://www.encodeproject.org/files/ENCFF680LNX/@@download/ENCFF680LNX.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF406NEL bigWig signal p-value ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF394WOA, ENCFF950FXV 716336091 ENCODE Processing Pipeline afca823ec185e6a7f86382e646dc9998 https://www.encodeproject.org/files/ENCFF406NEL/@@download/ENCFF406NEL.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF213DLY bigBed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF933WVD 7653144 ENCODE Processing Pipeline 26b53f04bb884711a9c53a0b77e48728 https://www.encodeproject.org/files/ENCFF213DLY/@@download/ENCFF213DLY.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF948YZX bigWig signal p-value ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF063SHI, ENCFF670KZF, ENCFF950FXV 1084348385 ENCODE Processing Pipeline aa8bfab68e91486726e2bd64e9f602fd https://www.encodeproject.org/files/ENCFF948YZX/@@download/ENCFF948YZX.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF888XPT bigWig signal p-value ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF063SHI, ENCFF394WOA, ENCFF670KZF, ENCFF950FXV 1187176035 ENCODE Processing Pipeline 83569a5c49f93a5867f872a0b65abfd7 https://www.encodeproject.org/files/ENCFF888XPT/@@download/ENCFF888XPT.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF269AGI bigWig fold change over control ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF394WOA, ENCFF950FXV 903502704 ENCODE Processing Pipeline 71e101ec43850de109a2b6f1d35c24a4 https://www.encodeproject.org/files/ENCFF269AGI/@@download/ENCFF269AGI.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF435AVJ bigWig fold change over control ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF063SHI, ENCFF670KZF, ENCFF950FXV 1113903640 ENCODE Processing Pipeline d551626feea84cb1f0b1f579445e40e1 https://www.encodeproject.org/files/ENCFF435AVJ/@@download/ENCFF435AVJ.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF533EGA bigWig fold change over control ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF063SHI, ENCFF394WOA, ENCFF670KZF, ENCFF950FXV 1573470814 ENCODE Processing Pipeline 0c92b7fb3e82860ebc58e15286788346 https://www.encodeproject.org/files/ENCFF533EGA/@@download/ENCFF533EGA.bigWig mm10-minimal archived sequencing runs labeled as technical replicates ENCFF638AEZ bed narrowPeak replicated peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF373LJN, ENCFF860KCP, ENCFF933WVD 2512340 ENCODE Processing Pipeline 8895e3a0f616b46ed7cebcae055bf3a9 https://www.encodeproject.org/files/ENCFF638AEZ/@@download/ENCFF638AEZ.bed.gz mm10-minimal archived sequencing runs labeled as technical replicates ENCFF158HGL bigBed narrowPeak replicated peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF638AEZ 5424610 ENCODE Processing Pipeline 0cdd30acbb53c4043ef114579ae629e4 https://www.encodeproject.org/files/ENCFF158HGL/@@download/ENCFF158HGL.bigBed mm10-minimal archived sequencing runs labeled as technical replicates ENCFF341XOA bam unfiltered alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF128OTX, ENCFF861GZT 2965998087 ENCODE Processing Pipeline 694f6a904e0fb75c40ca3465a69e3f86 https://www.encodeproject.org/files/ENCFF341XOA/@@download/ENCFF341XOA.bam mm10 released sequencing runs labeled as technical replicates ENCFF753RVO bam unfiltered alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF115BHE 3168698690 ENCODE Processing Pipeline bbea38c74fe9ee18c6f904cc2f111b21 https://www.encodeproject.org/files/ENCFF753RVO/@@download/ENCFF753RVO.bam mm10 released sequencing runs labeled as technical replicates ENCFF297ZBU bam alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF128OTX, ENCFF861GZT 2292810269 ENCODE Processing Pipeline d70a5efaf4bd43f226ff78f0f284c08a https://www.encodeproject.org/files/ENCFF297ZBU/@@download/ENCFF297ZBU.bam mm10 released sequencing runs labeled as technical replicates ENCFF434XWY bam alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF115BHE 2421421526 ENCODE Processing Pipeline f5fceee2c9ab083170876ea2a016e44b https://www.encodeproject.org/files/ENCFF434XWY/@@download/ENCFF434XWY.bam mm10 released sequencing runs labeled as technical replicates ENCFF256IPP bed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF434XWY, ENCFF563KVK 2799704 ENCODE Processing Pipeline b17ccaf5bd242c4e4130a00c84ac72fa https://www.encodeproject.org/files/ENCFF256IPP/@@download/ENCFF256IPP.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF147EJL bed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF297ZBU, ENCFF563KVK, ENCFF741BBU 3085874 ENCODE Processing Pipeline 051a485f94f612c858dee91ce92afbc2 https://www.encodeproject.org/files/ENCFF147EJL/@@download/ENCFF147EJL.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF494LBH bed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF297ZBU, ENCFF434XWY, ENCFF563KVK, ENCFF741BBU 4059768 ENCODE Processing Pipeline db5eaf794fe10d190d93bcfedaecd4c8 https://www.encodeproject.org/files/ENCFF494LBH/@@download/ENCFF494LBH.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF568YIQ bigBed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF147EJL 6352722 ENCODE Processing Pipeline cfea5f3197bb17ecd97d1cbe675667bc https://www.encodeproject.org/files/ENCFF568YIQ/@@download/ENCFF568YIQ.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF532QBD bigBed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF494LBH 10513152 ENCODE Processing Pipeline 08159b44d217a96a7245732cc7596ab7 https://www.encodeproject.org/files/ENCFF532QBD/@@download/ENCFF532QBD.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF193LJO bigBed narrowPeak peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF256IPP 5891024 ENCODE Processing Pipeline 23375d6e87cd323237b3e27fd1dd425a https://www.encodeproject.org/files/ENCFF193LJO/@@download/ENCFF193LJO.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF409HBG bigWig signal p-value ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF434XWY, ENCFF563KVK 847964895 ENCODE Processing Pipeline e42aff92ac9002e808a5ff0a3d5a6b3a https://www.encodeproject.org/files/ENCFF409HBG/@@download/ENCFF409HBG.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF401UHY bigWig signal p-value ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF297ZBU, ENCFF563KVK, ENCFF741BBU 772505888 ENCODE Processing Pipeline b9c2f7a787fe681ffe00876f13019fd1 https://www.encodeproject.org/files/ENCFF401UHY/@@download/ENCFF401UHY.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF533EDO bigWig signal p-value ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF297ZBU, ENCFF434XWY, ENCFF563KVK, ENCFF741BBU 1397424593 ENCODE Processing Pipeline fb98d421743e267da5f2d5bdb60ea789 https://www.encodeproject.org/files/ENCFF533EDO/@@download/ENCFF533EDO.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF251ACH bigWig fold change over control ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF434XWY, ENCFF563KVK 951531096 ENCODE Processing Pipeline cb2c0978d37d2a4047e9d9896e591264 https://www.encodeproject.org/files/ENCFF251ACH/@@download/ENCFF251ACH.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF630FKN bigWig fold change over control ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF297ZBU, ENCFF563KVK, ENCFF741BBU 1027610064 ENCODE Processing Pipeline b55e47d564dd30bd904177c79f997419 https://www.encodeproject.org/files/ENCFF630FKN/@@download/ENCFF630FKN.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF193NMX bigWig fold change over control ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF297ZBU, ENCFF434XWY, ENCFF563KVK, ENCFF741BBU 1554887260 ENCODE Processing Pipeline 4733ff6e229d199c01d804a756eaedcc https://www.encodeproject.org/files/ENCFF193NMX/@@download/ENCFF193NMX.bigWig mm10 released sequencing runs labeled as technical replicates ENCFF191DCQ bed narrowPeak replicated peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF147EJL, ENCFF256IPP, ENCFF494LBH 2749008 ENCODE Processing Pipeline fe0885f41c0deb2650480cf98c42a343 https://www.encodeproject.org/files/ENCFF191DCQ/@@download/ENCFF191DCQ.bed.gz mm10 released sequencing runs labeled as technical replicates ENCFF469POY bigBed narrowPeak replicated peaks ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF191DCQ 5955112 ENCODE Processing Pipeline 8d933c5e9d4c5c677a4b1d7b61eeabaf https://www.encodeproject.org/files/ENCFF469POY/@@download/ENCFF469POY.bigBed mm10 released sequencing runs labeled as technical replicates ENCFF945MPF fastq reads ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2002618208 Bing Ren, UCSD cf445f5ce62a1c6c5aadf50578bfaf4c SRA:SRR3651521 https://www.encodeproject.org/files/ENCFF945MPF/@@download/ENCFF945MPF.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released ENCFF031YMD fastq reads ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2165225969 Bing Ren, UCSD 53b938aa61d6ed1e2628cee25a16a2dc SRA:SRR3651520 https://www.encodeproject.org/files/ENCFF031YMD/@@download/ENCFF031YMD.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released ENCFF201GUW bam alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF031YMD, ENCFF806TVZ 2191737480 ENCODE Processing Pipeline 6d1d363dccccc6fc156d858a9a20dcc3 https://www.encodeproject.org/files/ENCFF201GUW/@@download/ENCFF201GUW.bam mm10-minimal archived ENCFF842HEF bam alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF945MPF 2073309992 ENCODE Processing Pipeline 205c090fae3a3637469cecd370cad60a https://www.encodeproject.org/files/ENCFF842HEF/@@download/ENCFF842HEF.bam mm10-minimal archived ENCFF982QFO bed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF201GUW, ENCFF233LRZ, ENCFF595MDP, ENCFF842HEF 3503803 ENCODE Processing Pipeline cc3fd513a6a27e1b5ac104c570865af3 https://www.encodeproject.org/files/ENCFF982QFO/@@download/ENCFF982QFO.bed.gz mm10-minimal archived ENCFF506FVA bigBed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF098ZOP 6076490 ENCODE Processing Pipeline ea41f6e4913e94326afd8e513f4559cc https://www.encodeproject.org/files/ENCFF506FVA/@@download/ENCFF506FVA.bigBed mm10-minimal archived ENCFF464ZJP bigBed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF684QDU 5622926 ENCODE Processing Pipeline 2b8e994c46224c3355c652672e0eed16 https://www.encodeproject.org/files/ENCFF464ZJP/@@download/ENCFF464ZJP.bigBed mm10-minimal archived ENCFF098ZOP bed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF842HEF 2903275 ENCODE Processing Pipeline 8550b7b4867ad168600f34ec9d14bf00 https://www.encodeproject.org/files/ENCFF098ZOP/@@download/ENCFF098ZOP.bed.gz mm10-minimal archived ENCFF684QDU bed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF201GUW, ENCFF233LRZ 2601350 ENCODE Processing Pipeline 7554d1d4b3335d8213b7d95db9fe6319 https://www.encodeproject.org/files/ENCFF684QDU/@@download/ENCFF684QDU.bed.gz mm10-minimal archived ENCFF240EYN bigWig signal p-value ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF842HEF 842807326 ENCODE Processing Pipeline e17d8d2683fbf0a40dd7307f01e66106 https://www.encodeproject.org/files/ENCFF240EYN/@@download/ENCFF240EYN.bigWig mm10-minimal archived ENCFF608SEM bigBed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF982QFO 9351779 ENCODE Processing Pipeline 703091f35b863295d5a3b029f5d4223f https://www.encodeproject.org/files/ENCFF608SEM/@@download/ENCFF608SEM.bigBed mm10-minimal archived ENCFF999CTH bigWig signal p-value ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF201GUW, ENCFF233LRZ 680117555 ENCODE Processing Pipeline 32997a443adebae69c099d9d8f14901c https://www.encodeproject.org/files/ENCFF999CTH/@@download/ENCFF999CTH.bigWig mm10-minimal archived ENCFF655YZJ bigWig signal p-value ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF201GUW, ENCFF233LRZ, ENCFF595MDP, ENCFF842HEF 1557859736 ENCODE Processing Pipeline 266e061a31cb930d3f88bc0d75f3bd8b https://www.encodeproject.org/files/ENCFF655YZJ/@@download/ENCFF655YZJ.bigWig mm10-minimal archived ENCFF914MDK bigWig fold change over control ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF201GUW, ENCFF233LRZ 906837388 ENCODE Processing Pipeline 207b4d0918e6934197c99b330d7bde55 https://www.encodeproject.org/files/ENCFF914MDK/@@download/ENCFF914MDK.bigWig mm10-minimal archived ENCFF434YEY bigWig fold change over control ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF842HEF 827748930 ENCODE Processing Pipeline e5c8283e2bdf4b240eef7a1223790cf2 https://www.encodeproject.org/files/ENCFF434YEY/@@download/ENCFF434YEY.bigWig mm10-minimal archived ENCFF802NJL bigWig fold change over control ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF201GUW, ENCFF233LRZ, ENCFF595MDP, ENCFF842HEF 1564385325 ENCODE Processing Pipeline 61f6f1605bfd6133fe683723a231e6ba https://www.encodeproject.org/files/ENCFF802NJL/@@download/ENCFF802NJL.bigWig mm10-minimal archived ENCFF882QFF bigBed narrowPeak replicated peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF476VZR 5262247 ENCODE Processing Pipeline f1ddb662d4e328980c2c81ace45bb870 https://www.encodeproject.org/files/ENCFF882QFF/@@download/ENCFF882QFF.bigBed mm10-minimal archived ENCFF476VZR bed narrowPeak replicated peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF098ZOP, ENCFF684QDU, ENCFF982QFO 2401851 ENCODE Processing Pipeline 241fd6ad92485325ef07e78a23e73eeb https://www.encodeproject.org/files/ENCFF476VZR/@@download/ENCFF476VZR.bed.gz mm10-minimal archived ENCFF320GWK bam unfiltered alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF945MPF 2703095309 ENCODE Processing Pipeline b4180dafc98c4947b38e147f45e300b1 https://www.encodeproject.org/files/ENCFF320GWK/@@download/ENCFF320GWK.bam mm10 released ENCFF036MRS bam unfiltered alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF031YMD 2904623916 ENCODE Processing Pipeline 41bacccd6acf1acc64bedaee2cd4b434 https://www.encodeproject.org/files/ENCFF036MRS/@@download/ENCFF036MRS.bam mm10 released ENCFF468WHG bam alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF945MPF 2072899032 ENCODE Processing Pipeline a5a89aa1337375d07015a4b2e9ff27be https://www.encodeproject.org/files/ENCFF468WHG/@@download/ENCFF468WHG.bam mm10 released ENCFF563JOE bam alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF031YMD 2191292882 ENCODE Processing Pipeline 04e3c2186153b2defacf5aa492358494 https://www.encodeproject.org/files/ENCFF563JOE/@@download/ENCFF563JOE.bam mm10 released ENCFF579VSI bed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF468WHG, ENCFF548IIV 2921166 ENCODE Processing Pipeline 0797d2402f6f27c4a315c22b6d1dfe48 https://www.encodeproject.org/files/ENCFF579VSI/@@download/ENCFF579VSI.bed.gz mm10 released ENCFF237WQW bed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF468WHG, ENCFF548IIV, ENCFF563JOE, ENCFF781DUP 3185397 ENCODE Processing Pipeline 478c1e06491e1050ab3cf782f14a3359 https://www.encodeproject.org/files/ENCFF237WQW/@@download/ENCFF237WQW.bed.gz mm10 released ENCFF087DLK bed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF563JOE, ENCFF781DUP 2507218 ENCODE Processing Pipeline b28d73d5d393c19f1e755eeab3524ab6 https://www.encodeproject.org/files/ENCFF087DLK/@@download/ENCFF087DLK.bed.gz mm10 released ENCFF955WFN bigBed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF087DLK 5444825 ENCODE Processing Pipeline 290deac0cfd42182339b0af1c37f8332 https://www.encodeproject.org/files/ENCFF955WFN/@@download/ENCFF955WFN.bigBed mm10 released ENCFF659ZAM bigBed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF579VSI 6105586 ENCODE Processing Pipeline cd86d08c6f6b3279431fafce03af68ca https://www.encodeproject.org/files/ENCFF659ZAM/@@download/ENCFF659ZAM.bigBed mm10 released ENCFF141OZB bigBed narrowPeak peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF237WQW 8557490 ENCODE Processing Pipeline fb7cefe16134aad242945b8f40812002 https://www.encodeproject.org/files/ENCFF141OZB/@@download/ENCFF141OZB.bigBed mm10 released ENCFF923ZCQ bigWig signal p-value ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF468WHG, ENCFF548IIV 615047407 ENCODE Processing Pipeline 8ac64c7768ee4583bb32544cb0d7945e https://www.encodeproject.org/files/ENCFF923ZCQ/@@download/ENCFF923ZCQ.bigWig mm10 released ENCFF847KGC bigWig signal p-value ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF563JOE, ENCFF781DUP 898312190 ENCODE Processing Pipeline d5a58af42c80ed2af0b7278e23f74063 https://www.encodeproject.org/files/ENCFF847KGC/@@download/ENCFF847KGC.bigWig mm10 released ENCFF412MZQ bigWig signal p-value ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF468WHG, ENCFF548IIV, ENCFF563JOE, ENCFF781DUP 1240511547 ENCODE Processing Pipeline 493099b487e78af4e13dc36c9ae05e29 https://www.encodeproject.org/files/ENCFF412MZQ/@@download/ENCFF412MZQ.bigWig mm10 released ENCFF320CPW bigWig fold change over control ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF468WHG, ENCFF548IIV 839155484 ENCODE Processing Pipeline 3fa27bbaf81f6c6434c965a8050c065c https://www.encodeproject.org/files/ENCFF320CPW/@@download/ENCFF320CPW.bigWig mm10 released ENCFF321RNC bigWig fold change over control ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF563JOE, ENCFF781DUP 897166477 ENCODE Processing Pipeline 06300b0bcf8f4565cdfa02730c23633e https://www.encodeproject.org/files/ENCFF321RNC/@@download/ENCFF321RNC.bigWig mm10 released ENCFF450IIR bigWig fold change over control ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF468WHG, ENCFF548IIV, ENCFF563JOE, ENCFF781DUP 1513474281 ENCODE Processing Pipeline 66afab0bc5956adf9e87e2697e93d950 https://www.encodeproject.org/files/ENCFF450IIR/@@download/ENCFF450IIR.bigWig mm10 released ENCFF980ELU bed narrowPeak replicated peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF087DLK, ENCFF237WQW, ENCFF579VSI 2296878 ENCODE Processing Pipeline 2eaeb1c112aebb10ccf0d3b6f44f732f https://www.encodeproject.org/files/ENCFF980ELU/@@download/ENCFF980ELU.bed.gz mm10 released ENCFF580XCS bigBed narrowPeak replicated peaks ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF980ELU 5017997 ENCODE Processing Pipeline fdd7dbf324061d25c599819d8ab14aeb https://www.encodeproject.org/files/ENCFF580XCS/@@download/ENCFF580XCS.bigBed mm10 released ENCFF534QLB fastq reads ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2344311843 Bing Ren, UCSD a5cf656b1cc7b4a331abf9a763325f50 SRA:SRR3651655 https://www.encodeproject.org/files/ENCFF534QLB/@@download/ENCFF534QLB.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released mild to moderate bottlenecking, inconsistent platforms ENCFF314DBV fastq reads ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2561358592 Bing Ren, UCSD 1a2391526e44f80355caa8a04e7c5109 SRA:SRR3651656 https://www.encodeproject.org/files/ENCFF314DBV/@@download/ENCFF314DBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released mild to moderate bottlenecking, inconsistent platforms ENCFF382BPM bam alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF534QLB, ENCFF806TVZ 1815003909 ENCODE Processing Pipeline 0ad1f4556b95196626f414ff80a5e853 https://www.encodeproject.org/files/ENCFF382BPM/@@download/ENCFF382BPM.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF343IRR bam alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314DBV, ENCFF806TVZ 2096253685 ENCODE Processing Pipeline 3412b5e05addf786a9e25a55e7314a25 https://www.encodeproject.org/files/ENCFF343IRR/@@download/ENCFF343IRR.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF567CSE bed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF382BPM 1451605 ENCODE Processing Pipeline ca8f60a681834edf88f751bba77c004f https://www.encodeproject.org/files/ENCFF567CSE/@@download/ENCFF567CSE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF156XEY bigBed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF460FWA 5460077 ENCODE Processing Pipeline 74ce153f3cc10dac1cf6bd9a8c2cd9f1 https://www.encodeproject.org/files/ENCFF156XEY/@@download/ENCFF156XEY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF594DAU bigBed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF121PWR 3492588 ENCODE Processing Pipeline aa4f53f86844edc2b6948825a1f164ba https://www.encodeproject.org/files/ENCFF594DAU/@@download/ENCFF594DAU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF460FWA bed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF343IRR, ENCFF382BPM 1942680 ENCODE Processing Pipeline 46c89e530cfef0753e9383b5082487db https://www.encodeproject.org/files/ENCFF460FWA/@@download/ENCFF460FWA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF446NIB bigBed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF567CSE 3413903 ENCODE Processing Pipeline f277bac4a8e96803e4de8653dad1561a https://www.encodeproject.org/files/ENCFF446NIB/@@download/ENCFF446NIB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF121PWR bed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF309QAZ, ENCFF343IRR 1515184 ENCODE Processing Pipeline 9b6f50b814994153691bf2e747840527 https://www.encodeproject.org/files/ENCFF121PWR/@@download/ENCFF121PWR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF921QNT bigWig signal p-value ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF309QAZ, ENCFF343IRR 717772084 ENCODE Processing Pipeline db5b2da4f9740b8a1030f3658e79bed4 https://www.encodeproject.org/files/ENCFF921QNT/@@download/ENCFF921QNT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF599DND bigWig signal p-value ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF382BPM 604174844 ENCODE Processing Pipeline d7d15a0dc68475263a6b7453c68a8187 https://www.encodeproject.org/files/ENCFF599DND/@@download/ENCFF599DND.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF134SON bigWig signal p-value ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF343IRR, ENCFF382BPM 1052256457 ENCODE Processing Pipeline 61c85241edb077aa4a7864124061df58 https://www.encodeproject.org/files/ENCFF134SON/@@download/ENCFF134SON.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF458SYD bigWig fold change over control ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF382BPM 627241728 ENCODE Processing Pipeline f21975e272eaa313a488b46667d56484 https://www.encodeproject.org/files/ENCFF458SYD/@@download/ENCFF458SYD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF645QUW bigWig fold change over control ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF309QAZ, ENCFF343IRR 714033079 ENCODE Processing Pipeline 4388f82441759885183dd3128f55876b https://www.encodeproject.org/files/ENCFF645QUW/@@download/ENCFF645QUW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF462STK bigWig fold change over control ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF343IRR, ENCFF382BPM 1228908533 ENCODE Processing Pipeline 948957747e6b4d815b9a289489695461 https://www.encodeproject.org/files/ENCFF462STK/@@download/ENCFF462STK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF270BEM bigBed narrowPeak replicated peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF112UJV 3170806 ENCODE Processing Pipeline 0ff02472e3ac3730a9a3f45a6b3a6e8a https://www.encodeproject.org/files/ENCFF270BEM/@@download/ENCFF270BEM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF112UJV bed narrowPeak replicated peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF121PWR, ENCFF460FWA, ENCFF567CSE 1364457 ENCODE Processing Pipeline 5eb949a9b2ee22533f8f58e9859bbccc https://www.encodeproject.org/files/ENCFF112UJV/@@download/ENCFF112UJV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF035KGE bam unfiltered alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF534QLB 2750525716 ENCODE Processing Pipeline e5a834c732cd7d814e5859929d47e7c2 https://www.encodeproject.org/files/ENCFF035KGE/@@download/ENCFF035KGE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF765ASP bam unfiltered alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF314DBV 3023624752 ENCODE Processing Pipeline 324bca0e92e172b573d64beaa40f91d2 https://www.encodeproject.org/files/ENCFF765ASP/@@download/ENCFF765ASP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF714OZM bam alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF314DBV 2095914514 ENCODE Processing Pipeline af14a6a6a345206045f0622c99041d8a https://www.encodeproject.org/files/ENCFF714OZM/@@download/ENCFF714OZM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF186QGN bam alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF534QLB 1814686926 ENCODE Processing Pipeline aacdcf3ef9d4c7d8b23e4b7e851adfe9 https://www.encodeproject.org/files/ENCFF186QGN/@@download/ENCFF186QGN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF253KCX bigBed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF662XJB 3495081 ENCODE Processing Pipeline 946fef4bfb36b6c09afa0a93974159e6 https://www.encodeproject.org/files/ENCFF253KCX/@@download/ENCFF253KCX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF128EZN bigWig signal p-value ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF714OZM 525522267 ENCODE Processing Pipeline d7ffd2a61af7c82e4fc9adf9099a9c04 https://www.encodeproject.org/files/ENCFF128EZN/@@download/ENCFF128EZN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF921UXF bigWig signal p-value ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF186QGN, ENCFF714OZM, ENCFF805AXD 901203254 ENCODE Processing Pipeline 0e7f9a23ac4923e646eaf7b5d068ddb2 https://www.encodeproject.org/files/ENCFF921UXF/@@download/ENCFF921UXF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF043JOK bed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF186QGN, ENCFF805AXD 1444620 ENCODE Processing Pipeline ef2d6abb7b842fe8dacfa6dc40ed623f https://www.encodeproject.org/files/ENCFF043JOK/@@download/ENCFF043JOK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF662XJB bed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF714OZM 1514959 ENCODE Processing Pipeline 5ca73d2196ab05bf0265f84bcfbfc610 https://www.encodeproject.org/files/ENCFF662XJB/@@download/ENCFF662XJB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF550ZNL bed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF186QGN, ENCFF714OZM, ENCFF805AXD 2072354 ENCODE Processing Pipeline 44205a52307b7afbff25c71587da35c4 https://www.encodeproject.org/files/ENCFF550ZNL/@@download/ENCFF550ZNL.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF063XPW bigBed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF043JOK 3394834 ENCODE Processing Pipeline 5f0e3c5158c2f2e8d1e9ed4ec42d0f2c https://www.encodeproject.org/files/ENCFF063XPW/@@download/ENCFF063XPW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF347EOJ bigBed narrowPeak peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF550ZNL 5811131 ENCODE Processing Pipeline 74dbe91822dac04ceeee81b3545d09fb https://www.encodeproject.org/files/ENCFF347EOJ/@@download/ENCFF347EOJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF136MSW bigWig signal p-value ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF186QGN, ENCFF805AXD 567488989 ENCODE Processing Pipeline b1d4fe1b03f52cdbed98bac19f439501 https://www.encodeproject.org/files/ENCFF136MSW/@@download/ENCFF136MSW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF959WHH bigWig fold change over control ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF186QGN, ENCFF805AXD 657365144 ENCODE Processing Pipeline 98600e0159db9da18fae11440a80300d https://www.encodeproject.org/files/ENCFF959WHH/@@download/ENCFF959WHH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF043GVM bigWig fold change over control ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF714OZM 716508138 ENCODE Processing Pipeline 9b4aa8385883cb95c08330bf44e490ef https://www.encodeproject.org/files/ENCFF043GVM/@@download/ENCFF043GVM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF789UMC bigWig fold change over control ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF186QGN, ENCFF714OZM, ENCFF805AXD 1275605103 ENCODE Processing Pipeline aa27644cd91aef5c36479d66665470e6 https://www.encodeproject.org/files/ENCFF789UMC/@@download/ENCFF789UMC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF464KTV bed narrowPeak replicated peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF043JOK, ENCFF550ZNL, ENCFF662XJB 1354116 ENCODE Processing Pipeline 982d0b09ed2797579fdcd7032d3b9320 https://www.encodeproject.org/files/ENCFF464KTV/@@download/ENCFF464KTV.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF157LTD bigBed narrowPeak replicated peaks ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF464KTV 3143257 ENCODE Processing Pipeline 27dd6162049e4cf770d0407198336115 https://www.encodeproject.org/files/ENCFF157LTD/@@download/ENCFF157LTD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF925WPN fastq reads ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1433764543 Bing Ren, UCSD 38b4ee3f9b2493ef7702960d6a56987d SRA:SRR3651682 https://www.encodeproject.org/files/ENCFF925WPN/@@download/ENCFF925WPN.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released mild to moderate bottlenecking ENCFF859APS fastq reads ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1568143618 Bing Ren, UCSD 3a2b16d1672c7130db1a8be8bab9caf1 SRA:SRR3651683 https://www.encodeproject.org/files/ENCFF859APS/@@download/ENCFF859APS.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released mild to moderate bottlenecking ENCFF614DQI bam alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF859APS 1461888157 ENCODE Processing Pipeline 5a607a9420c5c0925fd895010dcfbcdf https://www.encodeproject.org/files/ENCFF614DQI/@@download/ENCFF614DQI.bam mm10-minimal archived mild to moderate bottlenecking ENCFF427XPE bam alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF925WPN 1351081555 ENCODE Processing Pipeline 8d64e193fd12b590ba8243cde3a4ae62 https://www.encodeproject.org/files/ENCFF427XPE/@@download/ENCFF427XPE.bam mm10-minimal archived mild to moderate bottlenecking ENCFF390OEM bed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF614DQI 1230418 ENCODE Processing Pipeline 0e4c12a0dd61ee13779e9d536773701a https://www.encodeproject.org/files/ENCFF390OEM/@@download/ENCFF390OEM.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF800LPD bed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF427XPE, ENCFF595MDP, ENCFF614DQI 1727154 ENCODE Processing Pipeline 007d92cbb447a4aa73ec3916f0516adf https://www.encodeproject.org/files/ENCFF800LPD/@@download/ENCFF800LPD.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF686PIT bigBed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF390OEM 2944198 ENCODE Processing Pipeline 99a302d1c6814f9af02a7eb194d11e47 https://www.encodeproject.org/files/ENCFF686PIT/@@download/ENCFF686PIT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF636HML bigBed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF328RQT 3410788 ENCODE Processing Pipeline 2fe8dd1789179b2c0277b9c4f0364972 https://www.encodeproject.org/files/ENCFF636HML/@@download/ENCFF636HML.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF328RQT bed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF427XPE 1451467 ENCODE Processing Pipeline aeffe47536442c50817a312e4d343546 https://www.encodeproject.org/files/ENCFF328RQT/@@download/ENCFF328RQT.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF453AQJ bigBed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF800LPD 3889664 ENCODE Processing Pipeline d8535631ac32695c0bad979db96ea3b4 https://www.encodeproject.org/files/ENCFF453AQJ/@@download/ENCFF453AQJ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF901DWL bigWig signal p-value ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF614DQI 557879438 ENCODE Processing Pipeline 135fa753dd0f444986c17ed00554274a https://www.encodeproject.org/files/ENCFF901DWL/@@download/ENCFF901DWL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF037VYX bigWig signal p-value ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF427XPE 524725107 ENCODE Processing Pipeline 954ff795815344167a2c6dc6f3d0b034 https://www.encodeproject.org/files/ENCFF037VYX/@@download/ENCFF037VYX.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF112RWP bigWig signal p-value ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF427XPE, ENCFF595MDP, ENCFF614DQI 1078678521 ENCODE Processing Pipeline 83187f18b8b6b5961fc33073b4ecd4c8 https://www.encodeproject.org/files/ENCFF112RWP/@@download/ENCFF112RWP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF933BGJ bigWig fold change over control ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF614DQI 681675336 ENCODE Processing Pipeline 1e75a671e9d66ec9518f2568153347a3 https://www.encodeproject.org/files/ENCFF933BGJ/@@download/ENCFF933BGJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF242BPJ bigWig fold change over control ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF427XPE 627207339 ENCODE Processing Pipeline 5d732f1065bf04f5936a1f2a1d70ea18 https://www.encodeproject.org/files/ENCFF242BPJ/@@download/ENCFF242BPJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF822QXW bigWig fold change over control ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF427XPE, ENCFF595MDP, ENCFF614DQI 1171068804 ENCODE Processing Pipeline 23764ec195d1b6b3804db7d88791e5ef https://www.encodeproject.org/files/ENCFF822QXW/@@download/ENCFF822QXW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF337JMV bigBed narrowPeak replicated peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF019NVU 2603651 ENCODE Processing Pipeline de0839584e07a9703126c99476f06827 https://www.encodeproject.org/files/ENCFF337JMV/@@download/ENCFF337JMV.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF019NVU bed narrowPeak replicated peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF328RQT, ENCFF390OEM, ENCFF800LPD 1097504 ENCODE Processing Pipeline 55560b237005e5c469a7abb26b9078a3 https://www.encodeproject.org/files/ENCFF019NVU/@@download/ENCFF019NVU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF609PLT bam unfiltered alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF925WPN 1916646203 ENCODE Processing Pipeline 844f28f3fb3500d7cb09ddce95d3815c https://www.encodeproject.org/files/ENCFF609PLT/@@download/ENCFF609PLT.bam mm10 released mild to moderate bottlenecking ENCFF355VTF bam unfiltered alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF859APS 2087160483 ENCODE Processing Pipeline 690a631ef307aa534e0ef6346de7525e https://www.encodeproject.org/files/ENCFF355VTF/@@download/ENCFF355VTF.bam mm10 released mild to moderate bottlenecking ENCFF037LKE bam alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF925WPN 1350803629 ENCODE Processing Pipeline 9ab28e43631996b8d19e72e8cdc499da https://www.encodeproject.org/files/ENCFF037LKE/@@download/ENCFF037LKE.bam mm10 released mild to moderate bottlenecking ENCFF839QUF bam alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF859APS 1461578590 ENCODE Processing Pipeline 037851e1ce4a81cb7bbe9409b4a579ac https://www.encodeproject.org/files/ENCFF839QUF/@@download/ENCFF839QUF.bam mm10 released mild to moderate bottlenecking ENCFF233NCV bed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF839QUF 1484095 ENCODE Processing Pipeline a023d9b2a5661238f6aeb88b1cd5d5f2 https://www.encodeproject.org/files/ENCFF233NCV/@@download/ENCFF233NCV.bed.gz mm10 released mild to moderate bottlenecking ENCFF299ALR bigBed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF233NCV 3468863 ENCODE Processing Pipeline 712d6ec43b81dc7ac3fd6ecfffce2bfc https://www.encodeproject.org/files/ENCFF299ALR/@@download/ENCFF299ALR.bigBed mm10 released mild to moderate bottlenecking ENCFF546LYA bed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF037LKE, ENCFF781DUP 1451937 ENCODE Processing Pipeline 50d3850ef247a206d57f1e4d8b1a67a9 https://www.encodeproject.org/files/ENCFF546LYA/@@download/ENCFF546LYA.bed.gz mm10 released mild to moderate bottlenecking ENCFF790AUZ bed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF037LKE, ENCFF548IIV, ENCFF781DUP, ENCFF839QUF 1668297 ENCODE Processing Pipeline c24948e417efb182ef56432bf16b9336 https://www.encodeproject.org/files/ENCFF790AUZ/@@download/ENCFF790AUZ.bed.gz mm10 released mild to moderate bottlenecking ENCFF334NXR bigBed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF546LYA 3412746 ENCODE Processing Pipeline 720390dce33c8f61c93d5a18e7eda42d https://www.encodeproject.org/files/ENCFF334NXR/@@download/ENCFF334NXR.bigBed mm10 released mild to moderate bottlenecking ENCFF070YVN bigBed narrowPeak peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF790AUZ 4791352 ENCODE Processing Pipeline 83fc4e55491c97d439badf70be28fbc8 https://www.encodeproject.org/files/ENCFF070YVN/@@download/ENCFF070YVN.bigBed mm10 released mild to moderate bottlenecking ENCFF212MMF bigWig signal p-value ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF839QUF 651420617 ENCODE Processing Pipeline 55ac899779d8543acfb7b616e3e63603 https://www.encodeproject.org/files/ENCFF212MMF/@@download/ENCFF212MMF.bigWig mm10 released mild to moderate bottlenecking ENCFF051PNL bigWig signal p-value ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF037LKE, ENCFF781DUP 525907188 ENCODE Processing Pipeline 2eb0cef0c43c9982ca6b44be573bd191 https://www.encodeproject.org/files/ENCFF051PNL/@@download/ENCFF051PNL.bigWig mm10 released mild to moderate bottlenecking ENCFF708GSS bigWig signal p-value ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF037LKE, ENCFF548IIV, ENCFF781DUP, ENCFF839QUF 1062955912 ENCODE Processing Pipeline 23f240f50c29d652fcf86eedfca6de92 https://www.encodeproject.org/files/ENCFF708GSS/@@download/ENCFF708GSS.bigWig mm10 released mild to moderate bottlenecking ENCFF018WGU bigWig fold change over control ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF839QUF 671250186 ENCODE Processing Pipeline 7164e86987057c6cd9e04b4148da8aaf https://www.encodeproject.org/files/ENCFF018WGU/@@download/ENCFF018WGU.bigWig mm10 released mild to moderate bottlenecking ENCFF084JYZ bigWig fold change over control ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF037LKE, ENCFF781DUP 626437416 ENCODE Processing Pipeline 1d09088b4f6d1f1b87450a84df9648e8 https://www.encodeproject.org/files/ENCFF084JYZ/@@download/ENCFF084JYZ.bigWig mm10 released mild to moderate bottlenecking ENCFF406MDW bigWig fold change over control ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF037LKE, ENCFF548IIV, ENCFF781DUP, ENCFF839QUF 1216063132 ENCODE Processing Pipeline 07d2376900ad0f66b62855aca78b7c45 https://www.encodeproject.org/files/ENCFF406MDW/@@download/ENCFF406MDW.bigWig mm10 released mild to moderate bottlenecking ENCFF213XYX bed narrowPeak replicated peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233NCV, ENCFF546LYA, ENCFF790AUZ 1174394 ENCODE Processing Pipeline 3ee766255d02d2a5ec950f6230f73cc9 https://www.encodeproject.org/files/ENCFF213XYX/@@download/ENCFF213XYX.bed.gz mm10 released mild to moderate bottlenecking ENCFF239ZTO bigBed narrowPeak replicated peaks ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF213XYX 2775193 ENCODE Processing Pipeline 6ebdff48cb29319e25e08de552e5d5d6 https://www.encodeproject.org/files/ENCFF239ZTO/@@download/ENCFF239ZTO.bigBed mm10 released mild to moderate bottlenecking ENCFF139CEY fastq reads ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1987841577 Bing Ren, UCSD 98a437945c0be63a9c8ef94660290f85 SRA:SRR3653023 https://www.encodeproject.org/files/ENCFF139CEY/@@download/ENCFF139CEY.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released moderate library complexity, mild to moderate bottlenecking ENCFF117TGO fastq reads ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1792535123 Bing Ren, UCSD bc49fcbf0eae5438939ca0b0d56bf60e SRA:SRR3653024 https://www.encodeproject.org/files/ENCFF117TGO/@@download/ENCFF117TGO.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/, /files/ENCFF788YDC/ released moderate library complexity, mild to moderate bottlenecking ENCFF271MJX bam alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF117TGO, ENCFF806TVZ 1153560471 ENCODE Processing Pipeline 366a7aad8b116e50b8055bde2d0cadc6 https://www.encodeproject.org/files/ENCFF271MJX/@@download/ENCFF271MJX.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF304MME bam alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF139CEY, ENCFF806TVZ 1283263592 ENCODE Processing Pipeline aad497abb533e40ea8117702bcf02f13 https://www.encodeproject.org/files/ENCFF304MME/@@download/ENCFF304MME.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF582HLV bed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF304MME, ENCFF670KZF 886438 ENCODE Processing Pipeline 771764133c21579b151c133eeb7a7f1b https://www.encodeproject.org/files/ENCFF582HLV/@@download/ENCFF582HLV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF927STC bed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF271MJX, ENCFF304MME, ENCFF670KZF, ENCFF950FXV 972621 ENCODE Processing Pipeline e6134a4e10a1f5e2581ae94c50119243 https://www.encodeproject.org/files/ENCFF927STC/@@download/ENCFF927STC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF064HZQ bigWig signal p-value ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF304MME, ENCFF670KZF 687204820 ENCODE Processing Pipeline 45c970e5e10a0b9f858819096ccd2c87 https://www.encodeproject.org/files/ENCFF064HZQ/@@download/ENCFF064HZQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF022VMM bed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF271MJX, ENCFF950FXV 808619 ENCODE Processing Pipeline e622a2270b09669491c182fc9f451b0f https://www.encodeproject.org/files/ENCFF022VMM/@@download/ENCFF022VMM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF310KCB bigBed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF022VMM 2552153 ENCODE Processing Pipeline b4dce94d66e280609431213e87d3beef https://www.encodeproject.org/files/ENCFF310KCB/@@download/ENCFF310KCB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF809DJB bigBed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF927STC 2971218 ENCODE Processing Pipeline 2dc87f0b437c6431ac435f72cbc901d9 https://www.encodeproject.org/files/ENCFF809DJB/@@download/ENCFF809DJB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF717XZD bigWig signal p-value ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF271MJX, ENCFF950FXV 653181647 ENCODE Processing Pipeline 586e26539600864023514e1e8215d315 https://www.encodeproject.org/files/ENCFF717XZD/@@download/ENCFF717XZD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF175NGY bigBed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF582HLV 2773210 ENCODE Processing Pipeline d1fd3dd15fe78e6875594186cfc43e5a https://www.encodeproject.org/files/ENCFF175NGY/@@download/ENCFF175NGY.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF211YNN bigWig signal p-value ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF271MJX, ENCFF304MME, ENCFF670KZF, ENCFF950FXV 782359052 ENCODE Processing Pipeline abd3d043382866db104225cbe4fd0d15 https://www.encodeproject.org/files/ENCFF211YNN/@@download/ENCFF211YNN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF932HBF bigWig fold change over control ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF271MJX, ENCFF950FXV 561734197 ENCODE Processing Pipeline e9789d6b41aae30a2c0268a291f87176 https://www.encodeproject.org/files/ENCFF932HBF/@@download/ENCFF932HBF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF573BLI bigWig fold change over control ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF304MME, ENCFF670KZF 600935588 ENCODE Processing Pipeline 6bacc40ff47e15330118a8e5856bfd9f https://www.encodeproject.org/files/ENCFF573BLI/@@download/ENCFF573BLI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF117UKW bigWig fold change over control ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF271MJX, ENCFF304MME, ENCFF670KZF, ENCFF950FXV 1053878773 ENCODE Processing Pipeline 0bbf357f669f76a700eb83843667ed84 https://www.encodeproject.org/files/ENCFF117UKW/@@download/ENCFF117UKW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF512PRF bed narrowPeak replicated peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF022VMM, ENCFF582HLV, ENCFF927STC 922250 ENCODE Processing Pipeline 0a384926269198555177011d11b67606 https://www.encodeproject.org/files/ENCFF512PRF/@@download/ENCFF512PRF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF630BJL bigBed narrowPeak replicated peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF512PRF 2160690 ENCODE Processing Pipeline dc90d0a54ff5af750baabe073f6e0776 https://www.encodeproject.org/files/ENCFF630BJL/@@download/ENCFF630BJL.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF091LIV bam unfiltered alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF139CEY 2322629353 ENCODE Processing Pipeline 64253f754a9926a6d832a948a460dcd1 https://www.encodeproject.org/files/ENCFF091LIV/@@download/ENCFF091LIV.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF439MBX bam unfiltered alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF117TGO 2072075230 ENCODE Processing Pipeline f93e91f15dd3151c66ad55c4d64a6a38 https://www.encodeproject.org/files/ENCFF439MBX/@@download/ENCFF439MBX.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF252XMF bam alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF117TGO 1153335944 ENCODE Processing Pipeline 623e16b669fe05ff3efcaf7d0459bf62 https://www.encodeproject.org/files/ENCFF252XMF/@@download/ENCFF252XMF.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF332ONP bam alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF139CEY 1283000342 ENCODE Processing Pipeline 397361a1ca0ccd970855ed3709e426d4 https://www.encodeproject.org/files/ENCFF332ONP/@@download/ENCFF332ONP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF341NRL bed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF252XMF, ENCFF563KVK 894452 ENCODE Processing Pipeline 898a31c77be8cd3ee147aacbc7045c97 https://www.encodeproject.org/files/ENCFF341NRL/@@download/ENCFF341NRL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF795LUJ bed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF332ONP, ENCFF741BBU 886875 ENCODE Processing Pipeline f95fd029ce84a1bb2905bc76401f2b80 https://www.encodeproject.org/files/ENCFF795LUJ/@@download/ENCFF795LUJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF357SNT bed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF252XMF, ENCFF332ONP, ENCFF563KVK, ENCFF741BBU 973293 ENCODE Processing Pipeline 37ba73c6a1b94f5cefdbccd34aa83a20 https://www.encodeproject.org/files/ENCFF357SNT/@@download/ENCFF357SNT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF539MOW bigBed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF341NRL 2786707 ENCODE Processing Pipeline 344d0000866c26daf72dcb515b3267a5 https://www.encodeproject.org/files/ENCFF539MOW/@@download/ENCFF539MOW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF303WYC bigBed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF795LUJ 2775552 ENCODE Processing Pipeline ec3d8afeda4a2ceb2afdd6bc060e0cf9 https://www.encodeproject.org/files/ENCFF303WYC/@@download/ENCFF303WYC.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF140LLQ bigBed narrowPeak peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF357SNT 2973714 ENCODE Processing Pipeline 4c4934d917a3fe77685f6ccccd5382bb https://www.encodeproject.org/files/ENCFF140LLQ/@@download/ENCFF140LLQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF185SWY bigWig signal p-value ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF252XMF, ENCFF563KVK 511903512 ENCODE Processing Pipeline 8dbc6c0937b45a10c184de04c476ac17 https://www.encodeproject.org/files/ENCFF185SWY/@@download/ENCFF185SWY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF052ZMG bigWig signal p-value ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF332ONP, ENCFF741BBU 563512281 ENCODE Processing Pipeline f494fb2dd84ad3affce4f540819a0f12 https://www.encodeproject.org/files/ENCFF052ZMG/@@download/ENCFF052ZMG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF762PYS bigWig signal p-value ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF252XMF, ENCFF332ONP, ENCFF563KVK, ENCFF741BBU 985994131 ENCODE Processing Pipeline 61f7bc61b06fb7e08e10bff8a78b3f4d https://www.encodeproject.org/files/ENCFF762PYS/@@download/ENCFF762PYS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF802KMT bigWig fold change over control ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF252XMF, ENCFF563KVK 553384156 ENCODE Processing Pipeline bec5feaa2ec6b44e1315bf05593c35b7 https://www.encodeproject.org/files/ENCFF802KMT/@@download/ENCFF802KMT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF403QBT bigWig fold change over control ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF332ONP, ENCFF741BBU 603862163 ENCODE Processing Pipeline 3eac99f00d03a2358932de9b9d99b2f1 https://www.encodeproject.org/files/ENCFF403QBT/@@download/ENCFF403QBT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF660OFZ bigWig fold change over control ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF252XMF, ENCFF332ONP, ENCFF563KVK, ENCFF741BBU 1053498625 ENCODE Processing Pipeline dd8e0aae31ff77a414e1a8f3003bc9d3 https://www.encodeproject.org/files/ENCFF660OFZ/@@download/ENCFF660OFZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF077LYY bed narrowPeak replicated peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF341NRL, ENCFF357SNT, ENCFF795LUJ 934081 ENCODE Processing Pipeline 3ac7671786930bc69f27e4564aa29742 https://www.encodeproject.org/files/ENCFF077LYY/@@download/ENCFF077LYY.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF923XZA bigBed narrowPeak replicated peaks ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF077LYY 2187848 ENCODE Processing Pipeline 76def6e5d0d9b7f81d1f5eb0f183dc39 https://www.encodeproject.org/files/ENCFF923XZA/@@download/ENCFF923XZA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001NHT bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NIG 297222136 Michael Snyder, Stanford 7ee01e873c26270a1a44ebe5a2ddc122 https://www.encodeproject.org/files/ENCFF001NHT/@@download/ENCFF001NHT.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NHU bigBed narrowPeak peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIB 732200 Michael Snyder, Stanford 0a73c4529c6e5a912c290afa32035cc4 https://www.encodeproject.org/files/ENCFF001NHU/@@download/ENCFF001NHU.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NHV bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NIL 330203459 Michael Snyder, Stanford cef2a5311c1dd450306a627fa6035bd4 https://www.encodeproject.org/files/ENCFF001NHV/@@download/ENCFF001NHV.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NHW bigWig signal ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHT, ENCFF001NHV 266377835 Michael Snyder, Stanford eced6be2a50db1ab326f64cd25aa8355 https://www.encodeproject.org/files/ENCFF001NHW/@@download/ENCFF001NHW.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NIG fastq reads ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1054017987 Michael Snyder, Stanford 8fbeeae6fc3e91ccbbc7322aa6ee31a2 https://www.encodeproject.org/files/ENCFF001NIG/@@download/ENCFF001NIG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001NIL fastq reads ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1103743125 Michael Snyder, Stanford 5665ae28fa07e4b7ccc93f6674054188 https://www.encodeproject.org/files/ENCFF001NIL/@@download/ENCFF001NIL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001YIB bed narrowPeak peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHT, ENCFF001NHV 309646 Michael Snyder, Stanford ba51fcef06dd40609aba751d017036f6 https://www.encodeproject.org/files/ENCFF001YIB/@@download/ENCFF001YIB.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF224BDF bam unfiltered alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIL, ENCFF018NEO 1261108719 ENCODE Processing Pipeline e97baddfef064af39fd46474b79b2716 https://www.encodeproject.org/files/ENCFF224BDF/@@download/ENCFF224BDF.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF397CLT bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIL, ENCFF018NEO 742227762 ENCODE Processing Pipeline 229f2fcdca6c662d439ac21aa6c592a9 https://www.encodeproject.org/files/ENCFF397CLT/@@download/ENCFF397CLT.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF152HUN bam unfiltered alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIG, ENCFF018NEO 1200271333 ENCODE Processing Pipeline 6dfe9cc6f3d2fd895deaa77eca1a6af9 https://www.encodeproject.org/files/ENCFF152HUN/@@download/ENCFF152HUN.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF715HFI bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIG, ENCFF018NEO 678795791 ENCODE Processing Pipeline c3a09cd2667f0c242c0a825eb861d734 https://www.encodeproject.org/files/ENCFF715HFI/@@download/ENCFF715HFI.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF321OLG bigWig fold change over control ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF715HFI 239288627 ENCODE Processing Pipeline 284ff35beabaaaac7c0aa9ddfcea1c4f https://www.encodeproject.org/files/ENCFF321OLG/@@download/ENCFF321OLG.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF931WLI bigWig signal p-value ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF715HFI 242947669 ENCODE Processing Pipeline cf4cd3b9d3b53c91f3475bfd7e1787bd https://www.encodeproject.org/files/ENCFF931WLI/@@download/ENCFF931WLI.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF291IPD bigWig signal p-value ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF397CLT 237080192 ENCODE Processing Pipeline 82a5bd1290cbecb3d49b8ecf52069a3c https://www.encodeproject.org/files/ENCFF291IPD/@@download/ENCFF291IPD.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF489NLK bigWig signal p-value ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF397CLT, ENCFF715HFI 229518456 ENCODE Processing Pipeline f07654cfa481632900fd39c034f4c2a2 https://www.encodeproject.org/files/ENCFF489NLK/@@download/ENCFF489NLK.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF887GRQ bed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF397CLT, ENCFF715HFI 5550799 ENCODE Processing Pipeline a3b935f4f7a52d38d8dfde2aeadb6087 https://www.encodeproject.org/files/ENCFF887GRQ/@@download/ENCFF887GRQ.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF870RZM bigWig fold change over control ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF397CLT 251505467 ENCODE Processing Pipeline 72be3631ab097b72f05068572905a3d0 https://www.encodeproject.org/files/ENCFF870RZM/@@download/ENCFF870RZM.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF544VSI bigWig fold change over control ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF397CLT, ENCFF715HFI 416805062 ENCODE Processing Pipeline 5229b3554f6bf4b67d174ba93a014448 https://www.encodeproject.org/files/ENCFF544VSI/@@download/ENCFF544VSI.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF563YXX bed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF715HFI 4813259 ENCODE Processing Pipeline c7b70fc643e6a1f26dd0817d0ee9aebf https://www.encodeproject.org/files/ENCFF563YXX/@@download/ENCFF563YXX.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF908CAW bed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF397CLT 2906212 ENCODE Processing Pipeline 21277cf6da55a59990c76dd34ed074ec https://www.encodeproject.org/files/ENCFF908CAW/@@download/ENCFF908CAW.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF124UVL bigBed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF563YXX 10431311 ENCODE Processing Pipeline 9fc25c3474f467b4e0341be04cf0ecda https://www.encodeproject.org/files/ENCFF124UVL/@@download/ENCFF124UVL.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF411YAY bigBed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF887GRQ 12936141 ENCODE Processing Pipeline ee84f068502c250dafc2be1fcf17ac99 https://www.encodeproject.org/files/ENCFF411YAY/@@download/ENCFF411YAY.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF035ELN bigBed narrowPeak peaks and background as input for IDR ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF908CAW 6082408 ENCODE Processing Pipeline 461467f4618c1f0e3e637af7f45f5821 https://www.encodeproject.org/files/ENCFF035ELN/@@download/ENCFF035ELN.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF144UNP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF220DKK 643927 ENCODE Processing Pipeline 7e074d84ff3b883042f3122459b08503 https://www.encodeproject.org/files/ENCFF144UNP/@@download/ENCFF144UNP.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF457CXR bed narrowPeak optimal idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF563YXX, ENCFF887GRQ, ENCFF908CAW 327634 ENCODE Processing Pipeline 4c1b07b9bc2d795612bcd4afb3474b55 https://www.encodeproject.org/files/ENCFF457CXR/@@download/ENCFF457CXR.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF220DKK bed narrowPeak conservative idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF563YXX, ENCFF887GRQ, ENCFF908CAW 301376 ENCODE Processing Pipeline 765d6ec54e275eeb4431e92b7bf45a5c https://www.encodeproject.org/files/ENCFF220DKK/@@download/ENCFF220DKK.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF461XYD bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF457CXR 687097 ENCODE Processing Pipeline 317a0c053f7011d8a1433db7f76b2775 https://www.encodeproject.org/files/ENCFF461XYD/@@download/ENCFF461XYD.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF002ESP fastq reads ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 756549669 Bing Ren, UCSD 9a7d4bfb19dbe53ae14ace145a433119 SRA:SRR3653185 https://www.encodeproject.org/files/ENCFF002ESP/@@download/ENCFF002ESP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXU/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002ESQ fastq reads ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 840135105 Bing Ren, UCSD a4d814b3b69d234002714265aaecc6ed SRA:SRR3653183 https://www.encodeproject.org/files/ENCFF002ESQ/@@download/ENCFF002ESQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXS/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF132XEY fastq reads ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 589722202 Bing Ren, UCSD 2180b0f1cccae7963a3fc8b36ace81a3 SRA:SRR3653186 https://www.encodeproject.org/files/ENCFF132XEY/@@download/ENCFF132XEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXU/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF353DPR fastq reads ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 513018383 Bing Ren, UCSD 1a2a93c71842d016ccc7a60a844b6acd SRA:SRR3653184 https://www.encodeproject.org/files/ENCFF353DPR/@@download/ENCFF353DPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXS/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF042WQZ bam alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESP, ENCFF132XEY, ENCFF806TVZ 1343083303 ENCODE Processing Pipeline 299f4277bc5567b1a878c5cf1f47926f https://www.encodeproject.org/files/ENCFF042WQZ/@@download/ENCFF042WQZ.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF533HYF bam alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESQ, ENCFF353DPR, ENCFF806TVZ 1351406432 ENCODE Processing Pipeline c44968d849d709102c0179222c80ce8c https://www.encodeproject.org/files/ENCFF533HYF/@@download/ENCFF533HYF.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF337PIW bed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF042WQZ, ENCFF532IQU, ENCFF533HYF, ENCFF540VMM 2819675 ENCODE Processing Pipeline cb8208aa0cb07766953b470a2e186dfa https://www.encodeproject.org/files/ENCFF337PIW/@@download/ENCFF337PIW.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF967DLV bigBed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF835RFU 8530057 ENCODE Processing Pipeline e35e803b700afb5e726454b03ca3504e https://www.encodeproject.org/files/ENCFF967DLV/@@download/ENCFF967DLV.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF715LHR bigBed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF814GRX 7623000 ENCODE Processing Pipeline 596936819bd7568fc6e5dd57fcfd3da7 https://www.encodeproject.org/files/ENCFF715LHR/@@download/ENCFF715LHR.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF814GRX bed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF533HYF, ENCFF540VMM 2754189 ENCODE Processing Pipeline e3e7c05d7fd4fdf4fdb181db2b70cae2 https://www.encodeproject.org/files/ENCFF814GRX/@@download/ENCFF814GRX.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF835RFU bed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF042WQZ, ENCFF532IQU, ENCFF540VMM 3128091 ENCODE Processing Pipeline 569d44db9e298626694d330a2e91eac4 https://www.encodeproject.org/files/ENCFF835RFU/@@download/ENCFF835RFU.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF148MMV bigBed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF337PIW 7715290 ENCODE Processing Pipeline 214fbe433b4fe6810fa6e39fb66301a4 https://www.encodeproject.org/files/ENCFF148MMV/@@download/ENCFF148MMV.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF136MRF bigWig signal p-value ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF533HYF, ENCFF540VMM 592660203 ENCODE Processing Pipeline c6c06d055bd57e685e64c86f17603977 https://www.encodeproject.org/files/ENCFF136MRF/@@download/ENCFF136MRF.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF744NTP bigWig signal p-value ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF042WQZ, ENCFF532IQU, ENCFF540VMM 542679122 ENCODE Processing Pipeline 3ee17e157afbbf7c1ffcb508b29f83b3 https://www.encodeproject.org/files/ENCFF744NTP/@@download/ENCFF744NTP.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF137KLQ bigWig signal p-value ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF042WQZ, ENCFF532IQU, ENCFF533HYF, ENCFF540VMM 866023201 ENCODE Processing Pipeline cf0d673f14d7108dade8d6f2228f339f https://www.encodeproject.org/files/ENCFF137KLQ/@@download/ENCFF137KLQ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF665XAH bigWig fold change over control ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF533HYF, ENCFF540VMM 653614849 ENCODE Processing Pipeline 9e872945efb895249f326d55a53e5955 https://www.encodeproject.org/files/ENCFF665XAH/@@download/ENCFF665XAH.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF532SYV bed narrowPeak replicated peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF337PIW, ENCFF814GRX, ENCFF835RFU 2714209 ENCODE Processing Pipeline 5ce4dadb84a3daa283320912c38d7fe2 https://www.encodeproject.org/files/ENCFF532SYV/@@download/ENCFF532SYV.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF591JZL bigWig fold change over control ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF042WQZ, ENCFF532IQU, ENCFF540VMM 640081510 ENCODE Processing Pipeline 6020933f0de162ea714341187fe73cd3 https://www.encodeproject.org/files/ENCFF591JZL/@@download/ENCFF591JZL.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF690ICR bigWig fold change over control ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF042WQZ, ENCFF532IQU, ENCFF533HYF, ENCFF540VMM 977983257 ENCODE Processing Pipeline df88d4937be47bf3d5270ed39422b7b1 https://www.encodeproject.org/files/ENCFF690ICR/@@download/ENCFF690ICR.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF170OWY bigBed narrowPeak replicated peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF532SYV 5685641 ENCODE Processing Pipeline 91f26e5676132fe4a093798f45231f0f https://www.encodeproject.org/files/ENCFF170OWY/@@download/ENCFF170OWY.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF782SNJ bam unfiltered alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESP, ENCFF018NEO, ENCFF132XEY 1569726667 ENCODE Processing Pipeline f51f8671c2fbf126c06ecdda6c9aeeda https://www.encodeproject.org/files/ENCFF782SNJ/@@download/ENCFF782SNJ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF291IDR bam unfiltered alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESQ, ENCFF018NEO, ENCFF353DPR 1615676613 ENCODE Processing Pipeline 5494990c497885888bb6aba905f74531 https://www.encodeproject.org/files/ENCFF291IDR/@@download/ENCFF291IDR.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF221WFK bam alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESQ, ENCFF018NEO, ENCFF353DPR 1219524709 ENCODE Processing Pipeline 597a4d5b713f5c7755a14570523e661a https://www.encodeproject.org/files/ENCFF221WFK/@@download/ENCFF221WFK.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF391CLH bam alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESP, ENCFF018NEO, ENCFF132XEY 1192732387 ENCODE Processing Pipeline 119ce4fcc17ce0de19173b8268c44ee5 https://www.encodeproject.org/files/ENCFF391CLH/@@download/ENCFF391CLH.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF624LPR bed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF221WFK, ENCFF394IRO, ENCFF742VJP 2733003 ENCODE Processing Pipeline 7dfccff548550fdad31d8f6d9aac19b9 https://www.encodeproject.org/files/ENCFF624LPR/@@download/ENCFF624LPR.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF933CLM bed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF391CLH, ENCFF394IRO, ENCFF742VJP 3144888 ENCODE Processing Pipeline fb7f2de17b711e123a41f9cda98c97f7 https://www.encodeproject.org/files/ENCFF933CLM/@@download/ENCFF933CLM.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF956OXZ bed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF221WFK, ENCFF391CLH, ENCFF394IRO, ENCFF742VJP 2791029 ENCODE Processing Pipeline 9e87db185dfeddf98876e732827258d5 https://www.encodeproject.org/files/ENCFF956OXZ/@@download/ENCFF956OXZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF772LDI bigBed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF624LPR 7573987 ENCODE Processing Pipeline 8f54ab3378a53a1e400147503d97406e https://www.encodeproject.org/files/ENCFF772LDI/@@download/ENCFF772LDI.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF428NTD bigBed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF933CLM 8560241 ENCODE Processing Pipeline 39862f86d86472f4520be593589f26ff https://www.encodeproject.org/files/ENCFF428NTD/@@download/ENCFF428NTD.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF966ZLG bigBed narrowPeak peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF956OXZ 7593001 ENCODE Processing Pipeline a2b529423076b90da1427748d89edc6f https://www.encodeproject.org/files/ENCFF966ZLG/@@download/ENCFF966ZLG.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF595KUT bigWig signal p-value ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF221WFK, ENCFF394IRO, ENCFF742VJP 567274031 ENCODE Processing Pipeline 512667744e5e01e0b7d2edb9d59aa78f https://www.encodeproject.org/files/ENCFF595KUT/@@download/ENCFF595KUT.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF081GST bigWig signal p-value ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF391CLH, ENCFF394IRO, ENCFF742VJP 585764109 ENCODE Processing Pipeline 080fae7d66abbe8d551863c6dd663a8b https://www.encodeproject.org/files/ENCFF081GST/@@download/ENCFF081GST.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF733FPW bigWig signal p-value ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF221WFK, ENCFF391CLH, ENCFF394IRO, ENCFF742VJP 856511174 ENCODE Processing Pipeline 63a67f9e714c96ee2d926783f666df1e https://www.encodeproject.org/files/ENCFF733FPW/@@download/ENCFF733FPW.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF462QWG bigWig fold change over control ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF221WFK, ENCFF394IRO, ENCFF742VJP 650166349 ENCODE Processing Pipeline 5ee1d1c2124afaaacd6d4100343c2271 https://www.encodeproject.org/files/ENCFF462QWG/@@download/ENCFF462QWG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF344AIY bigWig fold change over control ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF391CLH, ENCFF394IRO, ENCFF742VJP 631398422 ENCODE Processing Pipeline b5ba31653416c0461c0b135043b5d2ca https://www.encodeproject.org/files/ENCFF344AIY/@@download/ENCFF344AIY.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF665XFW bigWig fold change over control ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF221WFK, ENCFF391CLH, ENCFF394IRO, ENCFF742VJP 963735358 ENCODE Processing Pipeline 37e1c40ee1ae0135b9d3810f739e9dcc https://www.encodeproject.org/files/ENCFF665XFW/@@download/ENCFF665XFW.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF813WVL bed narrowPeak replicated peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF624LPR, ENCFF933CLM, ENCFF956OXZ 2630846 ENCODE Processing Pipeline a22e70b9ac5b0942a79ae1a323915347 https://www.encodeproject.org/files/ENCFF813WVL/@@download/ENCFF813WVL.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF982HLN bigBed narrowPeak replicated peaks ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF813WVL 5557718 ENCODE Processing Pipeline 0540b1aa17169fb4c51849da7a1b91ad https://www.encodeproject.org/files/ENCFF982HLN/@@download/ENCFF982HLN.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF691VJX fastq reads ENCSR862ZBY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1323088172 Richard Myers, HAIB 0dba8ab963ce66741c8f0896bdf382ab SRA:SRR5112188 https://www.encodeproject.org/files/ENCFF691VJX/@@download/ENCFF691VJX.fastq.gz Illumina HiSeq 2000 released low read depth ENCFF263KEN bam unfiltered alignments ENCSR862ZBY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF691VJX 1423975469 ENCODE Processing Pipeline def2ee9cc6ba3a525e3477ecd8ad5ff9 https://www.encodeproject.org/files/ENCFF263KEN/@@download/ENCFF263KEN.bam mm10 released low read depth ENCFF147QOO bam alignments ENCSR862ZBY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF691VJX 1076315704 ENCODE Processing Pipeline 7d65068607ee5bd493dcadbeadb5858c https://www.encodeproject.org/files/ENCFF147QOO/@@download/ENCFF147QOO.bam mm10 released low read depth ENCFF002DRV fastq reads ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 36 single-ended 1487582430 Bing Ren, UCSD 376e9d73ff7966d69a8ed868d8c49c7c SRA:SRR3651595 https://www.encodeproject.org/files/ENCFF002DRV/@@download/ENCFF002DRV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQO/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRX fastq reads ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 2 36 single-ended 375140099 Bing Ren, UCSD 82a451610102819aada1c70135e70fee SRA:SRR3651596 https://www.encodeproject.org/files/ENCFF002DRX/@@download/ENCFF002DRX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQO/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRY fastq reads ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 36 single-ended 1628684369 Bing Ren, UCSD 844109200250e7db61d2e328f8959569 SRA:SRR3651597 https://www.encodeproject.org/files/ENCFF002DRY/@@download/ENCFF002DRY.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQL/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSA fastq reads ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 2 36 single-ended 343707741 Bing Ren, UCSD f688826157e8b63a629c5c688c34880d SRA:SRR3651598 https://www.encodeproject.org/files/ENCFF002DSA/@@download/ENCFF002DSA.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQL/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF517JQD bam alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF002DRY, ENCFF002DSA, ENCFF806TVZ 983958571 ENCODE Processing Pipeline 82a7a1e80f0ed97fdc91516b78aebb16 https://www.encodeproject.org/files/ENCFF517JQD/@@download/ENCFF517JQD.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF703UMJ bam alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF002DRV, ENCFF002DRX, ENCFF806TVZ 1048295843 ENCODE Processing Pipeline 5c93effb18f5c1d3445ea4910e26c7b7 https://www.encodeproject.org/files/ENCFF703UMJ/@@download/ENCFF703UMJ.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF766YOH bed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF248DBJ, ENCFF703UMJ, ENCFF786XLC 224100 ENCODE Processing Pipeline 9652518f56c4b17345b882245d55cc43 https://www.encodeproject.org/files/ENCFF766YOH/@@download/ENCFF766YOH.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF120WQD bed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF248DBJ, ENCFF517JQD, ENCFF786XLC 512644 ENCODE Processing Pipeline 3b44b0ad597c3d49102a01b75aebdede https://www.encodeproject.org/files/ENCFF120WQD/@@download/ENCFF120WQD.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF230MZX bigBed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF766YOH 507330 ENCODE Processing Pipeline 0d9eb064c61ac277d0e932207ae3e8ae https://www.encodeproject.org/files/ENCFF230MZX/@@download/ENCFF230MZX.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF127KLF bigBed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF332DQK 676161 ENCODE Processing Pipeline 3ff120e545a862bec4ffde6c4433e4ed https://www.encodeproject.org/files/ENCFF127KLF/@@download/ENCFF127KLF.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF332DQK bed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF248DBJ, ENCFF517JQD, ENCFF703UMJ, ENCFF786XLC 264568 ENCODE Processing Pipeline 710e3cf2f9b9499e1afb898bf84c6ca3 https://www.encodeproject.org/files/ENCFF332DQK/@@download/ENCFF332DQK.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF193OGE bigBed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF120WQD 977250 ENCODE Processing Pipeline 32a90a64d79505709ed08f94dcbb6c15 https://www.encodeproject.org/files/ENCFF193OGE/@@download/ENCFF193OGE.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF789BIP bigWig signal p-value ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF248DBJ, ENCFF703UMJ, ENCFF786XLC 451761428 ENCODE Processing Pipeline 35a8f5b57ea7634a4dc80218e709ab79 https://www.encodeproject.org/files/ENCFF789BIP/@@download/ENCFF789BIP.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF067ZIJ bigWig signal p-value ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF248DBJ, ENCFF517JQD, ENCFF786XLC 502086989 ENCODE Processing Pipeline 6beee000db09fb38c94d51d8ca67d5ba https://www.encodeproject.org/files/ENCFF067ZIJ/@@download/ENCFF067ZIJ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF325OBN bigWig signal p-value ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF248DBJ, ENCFF517JQD, ENCFF703UMJ, ENCFF786XLC 614435668 ENCODE Processing Pipeline 277faacd4c20ec1e7259ff999f1e18f2 https://www.encodeproject.org/files/ENCFF325OBN/@@download/ENCFF325OBN.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF262XZY bigWig fold change over control ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF248DBJ, ENCFF703UMJ, ENCFF786XLC 469254377 ENCODE Processing Pipeline 6e36d17297a1af5083cfb9cec12d9985 https://www.encodeproject.org/files/ENCFF262XZY/@@download/ENCFF262XZY.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF312GLI bigWig fold change over control ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF248DBJ, ENCFF517JQD, ENCFF786XLC 449918055 ENCODE Processing Pipeline d50e38a9914d6d592cb6364f8fc30d19 https://www.encodeproject.org/files/ENCFF312GLI/@@download/ENCFF312GLI.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF797FTM bed narrowPeak replicated peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF120WQD, ENCFF332DQK, ENCFF766YOH 125772 ENCODE Processing Pipeline 920ec0da57e58cc280c9483d4a507e48 https://www.encodeproject.org/files/ENCFF797FTM/@@download/ENCFF797FTM.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF935SXH bigWig fold change over control ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF248DBJ, ENCFF517JQD, ENCFF703UMJ, ENCFF786XLC 720632518 ENCODE Processing Pipeline 639fdc2a9b6744c1656b8d3a02dd93ce https://www.encodeproject.org/files/ENCFF935SXH/@@download/ENCFF935SXH.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF578FUS bigBed narrowPeak replicated peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF797FTM 345848 ENCODE Processing Pipeline d42bbb93abe5210b526f7a239dafff64 https://www.encodeproject.org/files/ENCFF578FUS/@@download/ENCFF578FUS.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF778MEL bam unfiltered alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DRV, ENCFF002DRX, ENCFF018NEO 2370750040 ENCODE Processing Pipeline bb898a236296f0827f7923cab9e81772 https://www.encodeproject.org/files/ENCFF778MEL/@@download/ENCFF778MEL.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF308WRU bam unfiltered alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRY, ENCFF002DSA, ENCFF018NEO 2484185991 ENCODE Processing Pipeline 97e7014207ddb95494aaa965eb14ced2 https://www.encodeproject.org/files/ENCFF308WRU/@@download/ENCFF308WRU.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF623EXR bam alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DRV, ENCFF002DRX, ENCFF018NEO 1047641119 ENCODE Processing Pipeline 6e9345192419eb913bb60df0b9747922 https://www.encodeproject.org/files/ENCFF623EXR/@@download/ENCFF623EXR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF084AGQ bam alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRY, ENCFF002DSA, ENCFF018NEO 983353192 ENCODE Processing Pipeline e4a8e8c58760d76f79bbacfb14176863 https://www.encodeproject.org/files/ENCFF084AGQ/@@download/ENCFF084AGQ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF850JJW bed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF424QZD, ENCFF623EXR, ENCFF767URV 456066 ENCODE Processing Pipeline 0457e5b35796150c4547bf46a84579bd https://www.encodeproject.org/files/ENCFF850JJW/@@download/ENCFF850JJW.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF748GUL bed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF084AGQ, ENCFF767URV 127214 ENCODE Processing Pipeline dbc4ce0973899f744ef0a14e40449506 https://www.encodeproject.org/files/ENCFF748GUL/@@download/ENCFF748GUL.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF091BLH bed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF084AGQ, ENCFF424QZD, ENCFF623EXR, ENCFF767URV 276556 ENCODE Processing Pipeline 62a20ab9a99c6c923f126ba02fc40ccf https://www.encodeproject.org/files/ENCFF091BLH/@@download/ENCFF091BLH.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF327HOI bigBed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF850JJW 898136 ENCODE Processing Pipeline 971efe08e14a9b261d82e15a621f2945 https://www.encodeproject.org/files/ENCFF327HOI/@@download/ENCFF327HOI.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF500UMW bigBed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF748GUL 321958 ENCODE Processing Pipeline 35e2d586268ce0268b7d449165230c4a https://www.encodeproject.org/files/ENCFF500UMW/@@download/ENCFF500UMW.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF072PKL bigBed narrowPeak peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF091BLH 699967 ENCODE Processing Pipeline 30fb549158a30f65e2cbb0ea30e404b2 https://www.encodeproject.org/files/ENCFF072PKL/@@download/ENCFF072PKL.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF695XRY bigWig signal p-value ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF424QZD, ENCFF623EXR, ENCFF767URV 468132704 ENCODE Processing Pipeline 2e7886b592758cb33e49fda1be5835ff https://www.encodeproject.org/files/ENCFF695XRY/@@download/ENCFF695XRY.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF974EEZ bigWig signal p-value ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF084AGQ, ENCFF767URV 358956116 ENCODE Processing Pipeline 6598faef96fefdf0f5f3a602640df5e7 https://www.encodeproject.org/files/ENCFF974EEZ/@@download/ENCFF974EEZ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF121ZIO bigWig signal p-value ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF084AGQ, ENCFF424QZD, ENCFF623EXR, ENCFF767URV 622440972 ENCODE Processing Pipeline cedd6d653d123b237f96c85a75d8529d https://www.encodeproject.org/files/ENCFF121ZIO/@@download/ENCFF121ZIO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF119HUE bigWig fold change over control ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF424QZD, ENCFF623EXR, ENCFF767URV 471318499 ENCODE Processing Pipeline d0260c3d41354ebf5896ee2ce5f9a837 https://www.encodeproject.org/files/ENCFF119HUE/@@download/ENCFF119HUE.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF824NHI bigWig fold change over control ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF084AGQ, ENCFF767URV 383607938 ENCODE Processing Pipeline 235483b03eb9e0216aed833a7f67910d https://www.encodeproject.org/files/ENCFF824NHI/@@download/ENCFF824NHI.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF705MSQ bigWig fold change over control ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF084AGQ, ENCFF424QZD, ENCFF623EXR, ENCFF767URV 729127898 ENCODE Processing Pipeline fafef71d1e51bc1cb4f35c2b578be29b https://www.encodeproject.org/files/ENCFF705MSQ/@@download/ENCFF705MSQ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF339VOX bed narrowPeak replicated peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF091BLH, ENCFF748GUL, ENCFF850JJW 111001 ENCODE Processing Pipeline e6913e9fe04261ea673119a9e22cd164 https://www.encodeproject.org/files/ENCFF339VOX/@@download/ENCFF339VOX.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF835AMA bigBed narrowPeak replicated peaks ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF339VOX 315072 ENCODE Processing Pipeline 089588a5f0aa5e08eca509ba8e4bb778 https://www.encodeproject.org/files/ENCFF835AMA/@@download/ENCFF835AMA.bigBed 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https://www.encodeproject.org/files/ENCFF776IUS/@@download/ENCFF776IUS.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF374TDW bed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF581EXC, ENCFF849BXV 1819071 ENCODE Processing Pipeline e6b07c39b75b7557e0d14c53b9500698 https://www.encodeproject.org/files/ENCFF374TDW/@@download/ENCFF374TDW.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF919JZK bed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF517EVV, ENCFF581EXC, ENCFF849BXV 2088047 ENCODE Processing Pipeline edad5f33069ac3f2e940618bb64a613c https://www.encodeproject.org/files/ENCFF919JZK/@@download/ENCFF919JZK.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF592KWE bed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain 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ENCODE Processing Pipeline 379ff0e5c5bf71126b95c5acc0d40404 https://www.encodeproject.org/files/ENCFF273GDF/@@download/ENCFF273GDF.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF951IGL bigWig fold change over control ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF581EXC, ENCFF849BXV 1081202489 ENCODE Processing Pipeline 6f31b6d1af58f905b43e5bfa93f024d9 https://www.encodeproject.org/files/ENCFF951IGL/@@download/ENCFF951IGL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF656AUQ bigWig fold change over control ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF517EVV 825974987 ENCODE Processing Pipeline eb952fc418d898121172122bcf196049 https://www.encodeproject.org/files/ENCFF656AUQ/@@download/ENCFF656AUQ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF208SDY bigWig fold change over control ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF517EVV, ENCFF581EXC, ENCFF849BXV 1553596535 ENCODE Processing Pipeline 7791b68cf7b17cd9fc0228afe4eb75cc https://www.encodeproject.org/files/ENCFF208SDY/@@download/ENCFF208SDY.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF267KBY bed narrowPeak replicated peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF374TDW, ENCFF592KWE, ENCFF919JZK 940440 ENCODE Processing Pipeline e5c1eaf245cc69784f0c8ac98f38eb45 https://www.encodeproject.org/files/ENCFF267KBY/@@download/ENCFF267KBY.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF950OOS bigBed narrowPeak replicated peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF267KBY 1983151 ENCODE Processing Pipeline 99f4338c63f57d6c1ad05efa8b447af4 https://www.encodeproject.org/files/ENCFF950OOS/@@download/ENCFF950OOS.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF407SBA bam unfiltered alignments ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF674ZQG 2853924285 ENCODE Processing Pipeline cd715bd7eb13e35021db8376c5410324 https://www.encodeproject.org/files/ENCFF407SBA/@@download/ENCFF407SBA.bam mm10 released mild to moderate bottlenecking ENCFF541CCY bam unfiltered alignments ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF163FCZ 2907881357 ENCODE Processing Pipeline f1185e8a1d54fa0e16480189ba0828a9 https://www.encodeproject.org/files/ENCFF541CCY/@@download/ENCFF541CCY.bam mm10 released mild to moderate bottlenecking ENCFF177CGR bam alignments ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF163FCZ 2085117836 ENCODE Processing Pipeline 992cc50ac455df78c7b1d40e7593ab42 https://www.encodeproject.org/files/ENCFF177CGR/@@download/ENCFF177CGR.bam mm10 released mild to moderate bottlenecking ENCFF035OEC bam alignments ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF674ZQG 2008129707 ENCODE Processing Pipeline 56b6d414622fcdc0027e8dd33230d150 https://www.encodeproject.org/files/ENCFF035OEC/@@download/ENCFF035OEC.bam mm10 released mild to moderate bottlenecking ENCFF885MSE bed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF035OEC, ENCFF270SEO 1192689 ENCODE Processing Pipeline 8e3f91b273ffcf4c72332f0c5d892b87 https://www.encodeproject.org/files/ENCFF885MSE/@@download/ENCFF885MSE.bed.gz mm10 released mild to moderate bottlenecking ENCFF371FNO bed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF177CGR, ENCFF270SEO, ENCFF652BTE 1944478 ENCODE Processing Pipeline 8b104f4bdf4a9baf28cbe0dcb3fb0e8b https://www.encodeproject.org/files/ENCFF371FNO/@@download/ENCFF371FNO.bed.gz mm10 released mild to moderate bottlenecking ENCFF688UHN bigBed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF371FNO 3995339 ENCODE Processing Pipeline 2825dadc4e24ef58e40784123c6ff162 https://www.encodeproject.org/files/ENCFF688UHN/@@download/ENCFF688UHN.bigBed mm10 released mild to moderate bottlenecking ENCFF359LFE bed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF035OEC, ENCFF177CGR, ENCFF270SEO, ENCFF652BTE 2178738 ENCODE Processing Pipeline 2ee15e141d4026098c78bf8caa839eea https://www.encodeproject.org/files/ENCFF359LFE/@@download/ENCFF359LFE.bed.gz mm10 released mild to moderate bottlenecking ENCFF831ECI bigBed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF885MSE 2526406 ENCODE Processing Pipeline e6730e52a53f9383dae3fc229b4c7dd3 https://www.encodeproject.org/files/ENCFF831ECI/@@download/ENCFF831ECI.bigBed mm10 released mild to moderate bottlenecking ENCFF085PMM bigBed narrowPeak peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF359LFE 4351552 ENCODE Processing Pipeline 7d1dbb3b08d58d3df3e2039dda94d35f https://www.encodeproject.org/files/ENCFF085PMM/@@download/ENCFF085PMM.bigBed mm10 released mild to moderate bottlenecking ENCFF161SSD bigWig signal p-value ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF177CGR, ENCFF270SEO, ENCFF652BTE 912355837 ENCODE Processing Pipeline 5834a2699cbb29a500ea367447553ae9 https://www.encodeproject.org/files/ENCFF161SSD/@@download/ENCFF161SSD.bigWig mm10 released mild to moderate bottlenecking ENCFF070MEE bigWig signal p-value ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF035OEC, ENCFF270SEO 808610938 ENCODE Processing Pipeline c99d86866b8ace6936ae3e661c9192e7 https://www.encodeproject.org/files/ENCFF070MEE/@@download/ENCFF070MEE.bigWig mm10 released mild to moderate bottlenecking ENCFF405OOH bigWig signal p-value ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF035OEC, ENCFF177CGR, ENCFF270SEO, ENCFF652BTE 1555952555 ENCODE Processing Pipeline 825388437783441ff16bac7ac5045593 https://www.encodeproject.org/files/ENCFF405OOH/@@download/ENCFF405OOH.bigWig mm10 released mild to moderate bottlenecking ENCFF131PVO bigWig fold change over control ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF177CGR, ENCFF270SEO, ENCFF652BTE 1055959701 ENCODE Processing Pipeline 824befc0bb2accdf14bbad93a45aa48b https://www.encodeproject.org/files/ENCFF131PVO/@@download/ENCFF131PVO.bigWig mm10 released mild to moderate bottlenecking ENCFF003QMG bigWig fold change over control ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF035OEC, ENCFF270SEO 820884668 ENCODE Processing Pipeline 8bb08fc8d465b49f9082e60466a19d2c https://www.encodeproject.org/files/ENCFF003QMG/@@download/ENCFF003QMG.bigWig mm10 released mild to moderate bottlenecking ENCFF349EPV bigWig fold change over control ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF035OEC, ENCFF177CGR, ENCFF270SEO, ENCFF652BTE 1566938876 ENCODE Processing Pipeline 8cdc0f155ddf278dec3f143f81fc3ef8 https://www.encodeproject.org/files/ENCFF349EPV/@@download/ENCFF349EPV.bigWig mm10 released mild to moderate bottlenecking ENCFF435HPM bed narrowPeak replicated peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF359LFE, ENCFF371FNO, ENCFF885MSE 1112735 ENCODE Processing Pipeline d6bfcb69c854defe64fe4d401631bd19 https://www.encodeproject.org/files/ENCFF435HPM/@@download/ENCFF435HPM.bed.gz mm10 released mild to moderate bottlenecking ENCFF598FRH bigBed narrowPeak replicated peaks ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF435HPM 2364822 ENCODE Processing Pipeline 2f7e8b896c564a69f404c57c64377a57 https://www.encodeproject.org/files/ENCFF598FRH/@@download/ENCFF598FRH.bigBed mm10 released mild to moderate bottlenecking ENCFF081NMJ fastq reads ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2636333751 Bing Ren, UCSD fc6dd36ef3e75080a38d109aa83a691f SRA:SRR3651603 https://www.encodeproject.org/files/ENCFF081NMJ/@@download/ENCFF081NMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF699BCV fastq reads ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1129208105 Bing Ren, UCSD d320f5ee62e409b5df9068be37a40c34 SRA:SRR3651601 https://www.encodeproject.org/files/ENCFF699BCV/@@download/ENCFF699BCV.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF058MRV fastq reads ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2843063143 Bing Ren, UCSD 8d5647de449d39cd22ebe9de91cc2e48 SRA:SRR3651602 https://www.encodeproject.org/files/ENCFF058MRV/@@download/ENCFF058MRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF168IVX fastq reads ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 964611159 Bing Ren, UCSD 45b655e2ed8ba4d7a0c5a52844c63a33 SRA:SRR3651604 https://www.encodeproject.org/files/ENCFF168IVX/@@download/ENCFF168IVX.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF149BFU bam alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF058MRV, ENCFF699BCV, ENCFF806TVZ 3289511881 ENCODE Processing Pipeline d82cf645a9be9d72a249dba504d3db38 https://www.encodeproject.org/files/ENCFF149BFU/@@download/ENCFF149BFU.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF768ZMA bam alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081NMJ, ENCFF168IVX, ENCFF806TVZ 2983708018 ENCODE Processing Pipeline 34629368d965023f0b0ed7ac88be3762 https://www.encodeproject.org/files/ENCFF768ZMA/@@download/ENCFF768ZMA.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF983DGP bed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149BFU, ENCFF263OMS, ENCFF667WJC, ENCFF768ZMA 1070213 ENCODE Processing Pipeline 0e19a72ebe5af78f0e7fd4f5499e6bea https://www.encodeproject.org/files/ENCFF983DGP/@@download/ENCFF983DGP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF274EKT bed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF768ZMA 1355313 ENCODE Processing Pipeline 1e9bd08cd6c26201e8d7ab464e66a928 https://www.encodeproject.org/files/ENCFF274EKT/@@download/ENCFF274EKT.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF466WWI bigBed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF784CRL 2438689 ENCODE Processing Pipeline a4c19d399a34e400377c41f9027bf730 https://www.encodeproject.org/files/ENCFF466WWI/@@download/ENCFF466WWI.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF474DNM bigBed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF983DGP 2170819 ENCODE Processing Pipeline 4c1e46c183f46e13a0a83b5c027f098c https://www.encodeproject.org/files/ENCFF474DNM/@@download/ENCFF474DNM.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF486AER bigBed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF274EKT 2791894 ENCODE Processing Pipeline fbe49cf036a2318380d86469141b102f https://www.encodeproject.org/files/ENCFF486AER/@@download/ENCFF486AER.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF784CRL bed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF149BFU, ENCFF263OMS, ENCFF667WJC 1140723 ENCODE Processing Pipeline fead8f576820bdcc5f444fe51682bbc5 https://www.encodeproject.org/files/ENCFF784CRL/@@download/ENCFF784CRL.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF655OCH bigWig signal p-value ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF149BFU, ENCFF263OMS, ENCFF667WJC 939287387 ENCODE Processing Pipeline cd711b5f10a51b9c9b4e19a015a6e570 https://www.encodeproject.org/files/ENCFF655OCH/@@download/ENCFF655OCH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF956SNM bigWig signal p-value ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF768ZMA 775185774 ENCODE Processing Pipeline 80abb5b1fd4bbb8dc6d53361bf93c8fb https://www.encodeproject.org/files/ENCFF956SNM/@@download/ENCFF956SNM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF501ENT bigWig signal p-value ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149BFU, ENCFF263OMS, ENCFF667WJC, ENCFF768ZMA 1304651596 ENCODE Processing Pipeline af61ba3805ce2482d8dca3e59d277bad https://www.encodeproject.org/files/ENCFF501ENT/@@download/ENCFF501ENT.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF648LVP bigWig fold change over control ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF149BFU, ENCFF263OMS, ENCFF667WJC 1125465174 ENCODE Processing Pipeline 77525ab0e89c66b09c56c9c2cb665b4e https://www.encodeproject.org/files/ENCFF648LVP/@@download/ENCFF648LVP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF791TYP bigWig fold change over control ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF768ZMA 1040666039 ENCODE Processing Pipeline d3e28facd3016972b61771250e101cbf https://www.encodeproject.org/files/ENCFF791TYP/@@download/ENCFF791TYP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF107HBD bigWig fold change over control ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149BFU, ENCFF263OMS, ENCFF667WJC, ENCFF768ZMA 1591049034 ENCODE Processing Pipeline 2621c11d34938d11308ef33704719cdf https://www.encodeproject.org/files/ENCFF107HBD/@@download/ENCFF107HBD.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF091SCI bed narrowPeak replicated peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF274EKT, ENCFF784CRL, ENCFF983DGP 808136 ENCODE Processing Pipeline ab924689b055bd9e274efc5c6d186402 https://www.encodeproject.org/files/ENCFF091SCI/@@download/ENCFF091SCI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF935CJI bigBed narrowPeak replicated peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF091SCI 1801282 ENCODE Processing Pipeline 95757849ace39205af776ad9433adffd https://www.encodeproject.org/files/ENCFF935CJI/@@download/ENCFF935CJI.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF660CCM bam unfiltered alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF058MRV, ENCFF699BCV 4724209265 ENCODE Processing Pipeline 894f235f0d992dc09b6a15da2c71dc92 https://www.encodeproject.org/files/ENCFF660CCM/@@download/ENCFF660CCM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF470JME bam unfiltered alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF081NMJ, ENCFF168IVX 4285136992 ENCODE Processing Pipeline 506cb2c71e7de73283a9eccc8337cee3 https://www.encodeproject.org/files/ENCFF470JME/@@download/ENCFF470JME.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF003PZM bam alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF058MRV, ENCFF699BCV 3288832021 ENCODE Processing Pipeline 8f3d0f92cc04ed739bd1275108d0da55 https://www.encodeproject.org/files/ENCFF003PZM/@@download/ENCFF003PZM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF518UCO bam alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF081NMJ, ENCFF168IVX 2983107137 ENCODE Processing Pipeline c9de8af67289bd578d1dcc2f68d4a906 https://www.encodeproject.org/files/ENCFF518UCO/@@download/ENCFF518UCO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF345HEX bigBed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF095JCK 2888654 ENCODE Processing Pipeline 4db5e9587f554b168a2a260f27bc51b1 https://www.encodeproject.org/files/ENCFF345HEX/@@download/ENCFF345HEX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF049NGS bigBed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF984OJH 2888664 ENCODE Processing Pipeline 288a45b3f206143564721717612a71f9 https://www.encodeproject.org/files/ENCFF049NGS/@@download/ENCFF049NGS.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF095JCK bed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF003PZM, ENCFF031OYA, ENCFF514GVM 1356302 ENCODE Processing Pipeline f4de24c7e0d04a1e7ec3221ec76e34da https://www.encodeproject.org/files/ENCFF095JCK/@@download/ENCFF095JCK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF984OJH bed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF518UCO 1391483 ENCODE Processing Pipeline 18ce4c42142289d3ce4ca55199f203c7 https://www.encodeproject.org/files/ENCFF984OJH/@@download/ENCFF984OJH.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF698KCP bed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF003PZM, ENCFF031OYA, ENCFF514GVM, ENCFF518UCO 1512149 ENCODE Processing Pipeline af5446fd0031fec4de59f1b6f8adf850 https://www.encodeproject.org/files/ENCFF698KCP/@@download/ENCFF698KCP.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF297YGE bigWig signal p-value ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF003PZM, ENCFF031OYA, ENCFF514GVM 1140597513 ENCODE Processing Pipeline 87d2abfcb7efa1d52cf8cd01286d0c98 https://www.encodeproject.org/files/ENCFF297YGE/@@download/ENCFF297YGE.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF820JIR bigBed narrowPeak peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF698KCP 3045024 ENCODE Processing Pipeline 079afaebb2e249900fa068b44e80e413 https://www.encodeproject.org/files/ENCFF820JIR/@@download/ENCFF820JIR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF286UNM bigWig signal p-value ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF518UCO 1083056376 ENCODE Processing Pipeline fff836556779fd261ab36ed0205818ef https://www.encodeproject.org/files/ENCFF286UNM/@@download/ENCFF286UNM.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF427WJA bigWig signal p-value ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF003PZM, ENCFF031OYA, ENCFF514GVM, ENCFF518UCO 1646737977 ENCODE Processing Pipeline 793594838373dc38ef604be1ac44d974 https://www.encodeproject.org/files/ENCFF427WJA/@@download/ENCFF427WJA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF064YJI bigWig fold change over control ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF003PZM, ENCFF031OYA, ENCFF514GVM 1215924964 ENCODE Processing Pipeline c59b4f6e82846f8f5830b7a7c7b71043 https://www.encodeproject.org/files/ENCFF064YJI/@@download/ENCFF064YJI.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF108RUN bigWig fold change over control ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF518UCO 1171700913 ENCODE Processing Pipeline 642189da901b68722ca6bc46485fba32 https://www.encodeproject.org/files/ENCFF108RUN/@@download/ENCFF108RUN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF755WDT bigWig fold change over control ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF003PZM, ENCFF031OYA, ENCFF514GVM, ENCFF518UCO 1688048942 ENCODE Processing Pipeline 15c609ee3aeaa01b8b6be8afe148c0c4 https://www.encodeproject.org/files/ENCFF755WDT/@@download/ENCFF755WDT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF377NNY bed narrowPeak replicated peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF095JCK, ENCFF698KCP, ENCFF984OJH 834192 ENCODE Processing Pipeline c416e041b5ada05ffcef4956ac3579f6 https://www.encodeproject.org/files/ENCFF377NNY/@@download/ENCFF377NNY.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF202YIE bigBed narrowPeak replicated peaks ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF377NNY 1832711 ENCODE Processing Pipeline 3f0ca96440149901f51671150d2f695b https://www.encodeproject.org/files/ENCFF202YIE/@@download/ENCFF202YIE.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF121MJX fastq reads ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2214816679 Bing Ren, UCSD 5aa767d1c8ceafd8486a8ca5ddb9ff53 SRA:SRR3651697 https://www.encodeproject.org/files/ENCFF121MJX/@@download/ENCFF121MJX.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/, /files/ENCFF751HMJ/ released moderate library complexity, mild to moderate bottlenecking ENCFF690CSC fastq reads ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2892718010 Bing Ren, UCSD c437909a02324e83b178be05debc0bcd SRA:SRR3651696 https://www.encodeproject.org/files/ENCFF690CSC/@@download/ENCFF690CSC.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/, /files/ENCFF884YRX/ released moderate library complexity, mild to moderate bottlenecking ENCFF535XOW bam alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF690CSC, ENCFF806TVZ 2113725188 ENCODE Processing Pipeline 2c9743f506cbd0a79bcab0b63fc70f6a https://www.encodeproject.org/files/ENCFF535XOW/@@download/ENCFF535XOW.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF463FED bam alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF121MJX, ENCFF806TVZ 2104127314 ENCODE Processing Pipeline c672ff6f650dec20dbddd9360e3bb9e0 https://www.encodeproject.org/files/ENCFF463FED/@@download/ENCFF463FED.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF714KSH bigBed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF056UTH 3596306 ENCODE Processing Pipeline 849d2b2589acdda94fa4d6ab887efda5 https://www.encodeproject.org/files/ENCFF714KSH/@@download/ENCFF714KSH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF503YPB bed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF463FED 1088818 ENCODE Processing Pipeline f3191425aff8cd79e17c7ecb6b767b9b https://www.encodeproject.org/files/ENCFF503YPB/@@download/ENCFF503YPB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF515BAL bed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405LXU, ENCFF535XOW, ENCFF980WPU 1479998 ENCODE Processing Pipeline 25891b667131e0e3365d9ac3a9b7d7d2 https://www.encodeproject.org/files/ENCFF515BAL/@@download/ENCFF515BAL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF627TYF bigBed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF503YPB 2491139 ENCODE Processing Pipeline ee96eea0372bd5f195526d1f3ae9f4cf https://www.encodeproject.org/files/ENCFF627TYF/@@download/ENCFF627TYF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF056UTH bed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF463FED, ENCFF535XOW, ENCFF980WPU 1662930 ENCODE Processing Pipeline 443107e59705d79de38fa9ecdda9e2ab https://www.encodeproject.org/files/ENCFF056UTH/@@download/ENCFF056UTH.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF309JJR bigBed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF515BAL 3388377 ENCODE Processing Pipeline ec65942a8297ce47ed6b80935ccc9a8e https://www.encodeproject.org/files/ENCFF309JJR/@@download/ENCFF309JJR.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF477EAY bigWig signal p-value ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF463FED 712270918 ENCODE Processing Pipeline 4a76fab8b780346f6511e8ed94c84970 https://www.encodeproject.org/files/ENCFF477EAY/@@download/ENCFF477EAY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF316PVY bigWig signal p-value ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405LXU, ENCFF535XOW, ENCFF980WPU 1012656651 ENCODE Processing Pipeline 5f084ebc0a10ead9386eee4c6b59ad1e https://www.encodeproject.org/files/ENCFF316PVY/@@download/ENCFF316PVY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF685LOC bigWig signal p-value ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF463FED, ENCFF535XOW, ENCFF980WPU 1141172348 ENCODE Processing Pipeline 729936e62b0f3a1cd095803c722e22f5 https://www.encodeproject.org/files/ENCFF685LOC/@@download/ENCFF685LOC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF347KEO bigWig fold change over control ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF463FED 932884590 ENCODE Processing Pipeline 25ec5548fca9f3eb976a5983383fc01f https://www.encodeproject.org/files/ENCFF347KEO/@@download/ENCFF347KEO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF364AOL bigWig fold change over control ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405LXU, ENCFF535XOW, ENCFF980WPU 1219764006 ENCODE Processing Pipeline 97d0b05501c50e72924814bf7096df27 https://www.encodeproject.org/files/ENCFF364AOL/@@download/ENCFF364AOL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF677KNB bigWig fold change over control ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF463FED, ENCFF535XOW, ENCFF980WPU 1635492108 ENCODE Processing Pipeline 3db2a7a7f272cfbac25ed6036565430d https://www.encodeproject.org/files/ENCFF677KNB/@@download/ENCFF677KNB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF707QQV bed narrowPeak replicated peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF056UTH, ENCFF503YPB, ENCFF515BAL 704280 ENCODE Processing Pipeline f25b17d3758829183c469e4e58c8c49e https://www.encodeproject.org/files/ENCFF707QQV/@@download/ENCFF707QQV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF855DJD bigBed narrowPeak replicated peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF707QQV 1584563 ENCODE Processing Pipeline f94a02b32cb8168f9a16827141d02156 https://www.encodeproject.org/files/ENCFF855DJD/@@download/ENCFF855DJD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF018TPP bam unfiltered alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF690CSC 3618400164 ENCODE Processing Pipeline 61f6ff65b62c984019e4aa70d0ab8f08 https://www.encodeproject.org/files/ENCFF018TPP/@@download/ENCFF018TPP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF996CQX bam unfiltered alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF121MJX 2960349864 ENCODE Processing Pipeline ac9dc273a18a08728d40dac8e1beafaf https://www.encodeproject.org/files/ENCFF996CQX/@@download/ENCFF996CQX.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF700LJU bam alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF121MJX 2103713843 ENCODE Processing Pipeline da8fa2bbfa306820bf3e128d2e3dbdce https://www.encodeproject.org/files/ENCFF700LJU/@@download/ENCFF700LJU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF003LEB bam alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF690CSC 2113294903 ENCODE Processing Pipeline f104c0ac6c890ffc19527aa62020ffda https://www.encodeproject.org/files/ENCFF003LEB/@@download/ENCFF003LEB.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF175XVZ bed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF003LEB, ENCFF399MAG, ENCFF609XDL 1516666 ENCODE Processing Pipeline 2c749b6a39f03cccd9503833c2a0f15a https://www.encodeproject.org/files/ENCFF175XVZ/@@download/ENCFF175XVZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF397AKC bed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF700LJU 1124214 ENCODE Processing Pipeline f33c0b4449afd9d756f6343f6b53ba2d https://www.encodeproject.org/files/ENCFF397AKC/@@download/ENCFF397AKC.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF084BKY bed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF003LEB, ENCFF399MAG, ENCFF609XDL, ENCFF700LJU 1898131 ENCODE Processing Pipeline a5e536f2cbc4773eccef4104e6712163 https://www.encodeproject.org/files/ENCFF084BKY/@@download/ENCFF084BKY.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF428RFK bigBed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF397AKC 2573162 ENCODE Processing Pipeline 3992deadc085933c0f062bebc3f5c9c3 https://www.encodeproject.org/files/ENCFF428RFK/@@download/ENCFF428RFK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF847VVM bigBed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF175XVZ 3445295 ENCODE Processing Pipeline b1fcaf6a29ddcbd76473c8e78f5e151f https://www.encodeproject.org/files/ENCFF847VVM/@@download/ENCFF847VVM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF374LNU bigBed narrowPeak peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF084BKY 4123135 ENCODE Processing Pipeline 1adc643424d81b13fcd87ce3db999425 https://www.encodeproject.org/files/ENCFF374LNU/@@download/ENCFF374LNU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF900KTN bigWig signal p-value ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF700LJU 934720001 ENCODE Processing Pipeline 49970d07c0d8bb750ae72873ebc791c4 https://www.encodeproject.org/files/ENCFF900KTN/@@download/ENCFF900KTN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF507KTH bigWig signal p-value ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF003LEB, ENCFF399MAG, ENCFF609XDL 1106529918 ENCODE Processing Pipeline 39b25f3dcf136268269bf4b9c9edb8d9 https://www.encodeproject.org/files/ENCFF507KTH/@@download/ENCFF507KTH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF630RHM bigWig signal p-value ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF003LEB, ENCFF399MAG, ENCFF609XDL, ENCFF700LJU 1495010689 ENCODE Processing Pipeline 58df95216dc6e6ca6b2e2648ca2ceb86 https://www.encodeproject.org/files/ENCFF630RHM/@@download/ENCFF630RHM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF948PIO bigWig fold change over control ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF700LJU 938202591 ENCODE Processing Pipeline d56d1fe06a520868b44b479df2051075 https://www.encodeproject.org/files/ENCFF948PIO/@@download/ENCFF948PIO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF639KMT bigWig fold change over control ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF003LEB, ENCFF399MAG, ENCFF609XDL 1174150615 ENCODE Processing Pipeline ecd80c7cb5403ea5f512b16d96bacc9e https://www.encodeproject.org/files/ENCFF639KMT/@@download/ENCFF639KMT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF983GFL bigWig fold change over control ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF003LEB, ENCFF399MAG, ENCFF609XDL, ENCFF700LJU 1691525428 ENCODE Processing Pipeline 04da571f9945a116e1cf745927b3d1d9 https://www.encodeproject.org/files/ENCFF983GFL/@@download/ENCFF983GFL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF884KTA bed narrowPeak replicated peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF084BKY, ENCFF175XVZ, ENCFF397AKC 711726 ENCODE Processing Pipeline 585137e82125f1bed6b2190193bf3475 https://www.encodeproject.org/files/ENCFF884KTA/@@download/ENCFF884KTA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF500CLB bigBed narrowPeak replicated peaks ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF884KTA 1590234 ENCODE Processing Pipeline 8cfa307368f295db7f01dafa5206671f https://www.encodeproject.org/files/ENCFF500CLB/@@download/ENCFF500CLB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF188QTH fastq reads ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 3168464053 Bing Ren, UCSD ad9b23f7a6f53fa5a065e43129c59435 SRA:SRR3651838 https://www.encodeproject.org/files/ENCFF188QTH/@@download/ENCFF188QTH.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/, /files/ENCFF751HMJ/ released mild to moderate bottlenecking ENCFF970YIV fastq reads ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1833004645 Bing Ren, UCSD f0bc1152371da18fc96f7fc3d7faf560 SRA:SRR3651837 https://www.encodeproject.org/files/ENCFF970YIV/@@download/ENCFF970YIV.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/, /files/ENCFF884YRX/ released mild to moderate bottlenecking ENCFF853WJR bam alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF188QTH, ENCFF806TVZ 2120224423 ENCODE Processing Pipeline fb8257600570b10810671832a1d5d292 https://www.encodeproject.org/files/ENCFF853WJR/@@download/ENCFF853WJR.bam mm10-minimal archived mild to moderate bottlenecking ENCFF927QUP bam alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF970YIV 1264684092 ENCODE Processing Pipeline a179ae35dc22522329b55739cef5659c https://www.encodeproject.org/files/ENCFF927QUP/@@download/ENCFF927QUP.bam mm10-minimal archived mild to moderate bottlenecking ENCFF294GLE bed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF927QUP, ENCFF980WPU 600214 ENCODE Processing Pipeline 329102b537e441aba403efea9287d084 https://www.encodeproject.org/files/ENCFF294GLE/@@download/ENCFF294GLE.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF779FYI bed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF853WJR 619110 ENCODE Processing Pipeline c6f3f8d05b2a4fa5926e6a47a1bd6a0b https://www.encodeproject.org/files/ENCFF779FYI/@@download/ENCFF779FYI.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF147ERS bed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF853WJR, ENCFF927QUP, ENCFF980WPU 861169 ENCODE Processing Pipeline f3e7b945b2f450c5b7aecfd239ac4fbe https://www.encodeproject.org/files/ENCFF147ERS/@@download/ENCFF147ERS.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF651DAW bigBed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF147ERS 1886687 ENCODE Processing Pipeline 31d2148202fa6b2e96daaa864b7e19cd https://www.encodeproject.org/files/ENCFF651DAW/@@download/ENCFF651DAW.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF671AIX bigBed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF294GLE 1141446 ENCODE Processing Pipeline 92f3b262b1ff39eeb6557ef560d58f51 https://www.encodeproject.org/files/ENCFF671AIX/@@download/ENCFF671AIX.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF427UCO bigBed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF779FYI 1455905 ENCODE Processing Pipeline e0af3988ac297911b3629b1fa4bac714 https://www.encodeproject.org/files/ENCFF427UCO/@@download/ENCFF427UCO.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF535NYO bigWig signal p-value ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF853WJR 664972918 ENCODE Processing Pipeline 956a447943c61b011437d13ec00bfeb0 https://www.encodeproject.org/files/ENCFF535NYO/@@download/ENCFF535NYO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF876AMO bigWig signal p-value ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF927QUP, ENCFF980WPU 579314301 ENCODE Processing Pipeline 48955447a4e8584eb0cccd227d33e41a https://www.encodeproject.org/files/ENCFF876AMO/@@download/ENCFF876AMO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF711WLG bigWig signal p-value ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF853WJR, ENCFF927QUP, ENCFF980WPU 1243361274 ENCODE Processing Pipeline debb920826406aa6db491ffb53cc6c8d https://www.encodeproject.org/files/ENCFF711WLG/@@download/ENCFF711WLG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF541WDW bigWig fold change over control ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF853WJR 927966062 ENCODE Processing Pipeline 059021ef5f8730eb2e8f972122c49776 https://www.encodeproject.org/files/ENCFF541WDW/@@download/ENCFF541WDW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF281CWC bigWig fold change over control ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF927QUP, ENCFF980WPU 631903183 ENCODE Processing Pipeline 47cfd0074f3bfe05c45903ef49c904cd https://www.encodeproject.org/files/ENCFF281CWC/@@download/ENCFF281CWC.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF913MCN bigWig fold change over control ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF853WJR, ENCFF927QUP, ENCFF980WPU 1418402592 ENCODE Processing Pipeline 0ea9a2d64069a23493bf47ec82fb4cad https://www.encodeproject.org/files/ENCFF913MCN/@@download/ENCFF913MCN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF416JUT bed narrowPeak replicated peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF147ERS, ENCFF294GLE, ENCFF779FYI 302150 ENCODE Processing Pipeline 7bd5ab30aa8afced810e483acfaf848d https://www.encodeproject.org/files/ENCFF416JUT/@@download/ENCFF416JUT.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF374FUS bigBed narrowPeak replicated peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF416JUT 674318 ENCODE Processing Pipeline 42814654d384c674869a00815a3374c0 https://www.encodeproject.org/files/ENCFF374FUS/@@download/ENCFF374FUS.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF161KQD bam unfiltered alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF970YIV 2454036791 ENCODE Processing Pipeline 7ed82fef57eed864852fcf4a3c7181fc https://www.encodeproject.org/files/ENCFF161KQD/@@download/ENCFF161KQD.bam mm10 released mild to moderate bottlenecking ENCFF426YCD bam alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF970YIV 1264028408 ENCODE Processing Pipeline d693398443b5a46761d7f675d835ad31 https://www.encodeproject.org/files/ENCFF426YCD/@@download/ENCFF426YCD.bam mm10 released mild to moderate bottlenecking ENCFF943XUZ bam unfiltered alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF188QTH 4133560758 ENCODE Processing Pipeline f9c7f3d2165dfc7b4d9e86ae9e2e3538 https://www.encodeproject.org/files/ENCFF943XUZ/@@download/ENCFF943XUZ.bam mm10 released mild to moderate bottlenecking ENCFF817IEO bam alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF188QTH 2119613832 ENCODE Processing Pipeline 5c0d355d908eb5dd6b9012494435950f https://www.encodeproject.org/files/ENCFF817IEO/@@download/ENCFF817IEO.bam mm10 released mild to moderate bottlenecking ENCFF881AKO bed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF817IEO 653221 ENCODE Processing Pipeline a095e89b97cbc662250d2ac87bcd950d https://www.encodeproject.org/files/ENCFF881AKO/@@download/ENCFF881AKO.bed.gz mm10 released mild to moderate bottlenecking ENCFF648LTJ bed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF426YCD, ENCFF609XDL 630506 ENCODE Processing Pipeline 44f770abfde57b263ff2892a5ac81cc4 https://www.encodeproject.org/files/ENCFF648LTJ/@@download/ENCFF648LTJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF498FQY bigBed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF881AKO 1522172 ENCODE Processing Pipeline 708edc85e42f12ba289bd1824331fcbc https://www.encodeproject.org/files/ENCFF498FQY/@@download/ENCFF498FQY.bigBed mm10 released mild to moderate bottlenecking ENCFF427GED bed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF426YCD, ENCFF609XDL, ENCFF817IEO 862529 ENCODE Processing Pipeline 328952f2871ac17038614c491fdf5f5a https://www.encodeproject.org/files/ENCFF427GED/@@download/ENCFF427GED.bed.gz mm10 released mild to moderate bottlenecking ENCFF099ANY bigBed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF648LTJ 1189351 ENCODE Processing Pipeline 86a4c812430bd207c6086b8e0312e7f0 https://www.encodeproject.org/files/ENCFF099ANY/@@download/ENCFF099ANY.bigBed mm10 released mild to moderate bottlenecking ENCFF893SKB bigBed narrowPeak peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF427GED 1892382 ENCODE Processing Pipeline 38f3c82481b6815f5326c4b8fa474aec https://www.encodeproject.org/files/ENCFF893SKB/@@download/ENCFF893SKB.bigBed mm10 released mild to moderate bottlenecking ENCFF352POV bigWig signal p-value ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF817IEO 678928867 ENCODE Processing Pipeline 2c41da258f72e98d0d49e4aad4565d86 https://www.encodeproject.org/files/ENCFF352POV/@@download/ENCFF352POV.bigWig mm10 released mild to moderate bottlenecking ENCFF569RKQ bigWig signal p-value ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF426YCD, ENCFF609XDL 585478512 ENCODE Processing Pipeline e7115176fb0cc91d2d84f0405e269284 https://www.encodeproject.org/files/ENCFF569RKQ/@@download/ENCFF569RKQ.bigWig mm10 released mild to moderate bottlenecking ENCFF690NUI bigWig signal p-value ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF426YCD, ENCFF609XDL, ENCFF817IEO 1415112807 ENCODE Processing Pipeline e1ea4cfe3d3756b59e9dec4d4046edf7 https://www.encodeproject.org/files/ENCFF690NUI/@@download/ENCFF690NUI.bigWig mm10 released mild to moderate bottlenecking ENCFF616DXP bigWig fold change over control ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF817IEO 933908071 ENCODE Processing Pipeline 2a17a71126a5a248757f54fe30317214 https://www.encodeproject.org/files/ENCFF616DXP/@@download/ENCFF616DXP.bigWig mm10 released mild to moderate bottlenecking ENCFF168YON bigWig fold change over control ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF426YCD, ENCFF609XDL 639265624 ENCODE Processing Pipeline 18d34f1c98c5ac377d24b95bb8765d6c https://www.encodeproject.org/files/ENCFF168YON/@@download/ENCFF168YON.bigWig mm10 released mild to moderate bottlenecking ENCFF919YGD bigWig fold change over control ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF426YCD, ENCFF609XDL, ENCFF817IEO 1415103782 ENCODE Processing Pipeline 3e45c4c3cdc7811400a42faba0ecdc3c https://www.encodeproject.org/files/ENCFF919YGD/@@download/ENCFF919YGD.bigWig mm10 released mild to moderate bottlenecking ENCFF831OMF bed narrowPeak replicated peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF427GED, ENCFF648LTJ, ENCFF881AKO 299766 ENCODE Processing Pipeline 7dd0ecc8f6306bde7f968deaa5422a4e https://www.encodeproject.org/files/ENCFF831OMF/@@download/ENCFF831OMF.bed.gz mm10 released mild to moderate bottlenecking ENCFF442TEQ bigBed narrowPeak replicated peaks ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF831OMF 674548 ENCODE Processing Pipeline 2a1fc26a20a927a39a7121589dccdbcd https://www.encodeproject.org/files/ENCFF442TEQ/@@download/ENCFF442TEQ.bigBed mm10 released mild to moderate bottlenecking ENCFF687XUV fastq reads ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2441825514 Bing Ren, UCSD 8355ebcaf7fcf5a1a216db86768484d3 SRA:SRR3651360 https://www.encodeproject.org/files/ENCFF687XUV/@@download/ENCFF687XUV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQD/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF641USQ fastq reads ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 622165795 Bing Ren, UCSD 407cac691b987bd817886cc9625614fe SRA:SRR3651358 https://www.encodeproject.org/files/ENCFF641USQ/@@download/ENCFF641USQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQH/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF418QGR fastq reads ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 3522956228 Bing Ren, UCSD 6d94ee7fff6c2db1eac55fc56e4afd09 SRA:SRR3651359 https://www.encodeproject.org/files/ENCFF418QGR/@@download/ENCFF418QGR.fastq.gz Illumina HiSeq 4000 /files/ENCFF002AQH/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF789LKA bam alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF687XUV, ENCFF806TVZ 1867299187 ENCODE Processing Pipeline 5498fa16019e4485e0c99726d94156fd https://www.encodeproject.org/files/ENCFF789LKA/@@download/ENCFF789LKA.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF288ZQX bam alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF418QGR, ENCFF641USQ, ENCFF806TVZ 2686555144 ENCODE Processing Pipeline 42aabcb5e3eb7dd87e15b87d0ae5bca3 https://www.encodeproject.org/files/ENCFF288ZQX/@@download/ENCFF288ZQX.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF366KRU bed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF288ZQX, ENCFF999ZTB 454440 ENCODE Processing Pipeline 076b7f90ede163a9ba9fcf5c30ddfe0b https://www.encodeproject.org/files/ENCFF366KRU/@@download/ENCFF366KRU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF181KAW bed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF789LKA, ENCFF999ZTB 589724 ENCODE Processing Pipeline b0c8b76b7e901aac18215e02691e34b6 https://www.encodeproject.org/files/ENCFF181KAW/@@download/ENCFF181KAW.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF970LAF bigBed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF545ZWB 1571873 ENCODE Processing Pipeline 3889ba55fe0f56520e2a1b3edd424eb1 https://www.encodeproject.org/files/ENCFF970LAF/@@download/ENCFF970LAF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF545ZWB bed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF288ZQX, ENCFF789LKA, ENCFF999ZTB 574593 ENCODE Processing Pipeline 316dbf4a887a13dc4993ab33f26d22b1 https://www.encodeproject.org/files/ENCFF545ZWB/@@download/ENCFF545ZWB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF137LRO bigBed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF181KAW 1630855 ENCODE Processing Pipeline 424918f23a123e34bd1edbaf3f6b826f https://www.encodeproject.org/files/ENCFF137LRO/@@download/ENCFF137LRO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF945XZJ bigWig signal p-value ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF789LKA, ENCFF999ZTB 414915426 ENCODE Processing Pipeline 97aaf2fc5044f04046a46b7571564f93 https://www.encodeproject.org/files/ENCFF945XZJ/@@download/ENCFF945XZJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF235DFP bigWig fold change over control ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF789LKA, ENCFF999ZTB 661793795 ENCODE Processing Pipeline df377a1c1f9df52363e8c9849c700924 https://www.encodeproject.org/files/ENCFF235DFP/@@download/ENCFF235DFP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF533MVB bigBed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF366KRU 1298214 ENCODE Processing Pipeline 7d45450a6ffa940fe7841cec59eb500f https://www.encodeproject.org/files/ENCFF533MVB/@@download/ENCFF533MVB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF290BKM bigWig signal p-value ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF288ZQX, ENCFF999ZTB 226704017 ENCODE Processing Pipeline 13c73f82ec90b921cd01aa91a2b5a0d3 https://www.encodeproject.org/files/ENCFF290BKM/@@download/ENCFF290BKM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF760DJJ bigWig signal p-value ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF288ZQX, ENCFF789LKA, ENCFF999ZTB 399899083 ENCODE Processing Pipeline a0a3b2a2c495aef0d8d6f5f3222b22ac https://www.encodeproject.org/files/ENCFF760DJJ/@@download/ENCFF760DJJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF469STC bigWig fold change over control ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF288ZQX, ENCFF789LKA, ENCFF999ZTB 1233307480 ENCODE Processing Pipeline d1c3cbb02b3cdec9459f068035398c23 https://www.encodeproject.org/files/ENCFF469STC/@@download/ENCFF469STC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF585BIH bigBed narrowPeak replicated peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF124KHV 1336723 ENCODE Processing Pipeline a7574c4eb36772722b5eaacdf516c038 https://www.encodeproject.org/files/ENCFF585BIH/@@download/ENCFF585BIH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF359AXI bigWig fold change over control ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF288ZQX, ENCFF999ZTB 742630893 ENCODE Processing Pipeline 5f50b579b52fc82f986853dce3c2e2bf https://www.encodeproject.org/files/ENCFF359AXI/@@download/ENCFF359AXI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF124KHV bed narrowPeak replicated peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF181KAW, ENCFF366KRU, ENCFF545ZWB 599710 ENCODE Processing Pipeline 67794f49178f20b5bc9daf4ed0b86caa https://www.encodeproject.org/files/ENCFF124KHV/@@download/ENCFF124KHV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF083ZPC bam unfiltered alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF018NEO, ENCFF687XUV 2961550177 ENCODE Processing Pipeline 83ceca4f968fd787df5d2e7a4a38425a https://www.encodeproject.org/files/ENCFF083ZPC/@@download/ENCFF083ZPC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF067IDV bam unfiltered alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF018NEO, ENCFF418QGR, ENCFF641USQ 5077871962 ENCODE Processing Pipeline e0061b2ed183a5d2b5a3e658545a61bd https://www.encodeproject.org/files/ENCFF067IDV/@@download/ENCFF067IDV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF106QPA bam alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF018NEO, ENCFF687XUV 1866953731 ENCODE Processing Pipeline f8b72d0209e27fc6dfc75034c7caa0f6 https://www.encodeproject.org/files/ENCFF106QPA/@@download/ENCFF106QPA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF825HOE bam alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF018NEO, ENCFF418QGR, ENCFF641USQ 2686026887 ENCODE Processing Pipeline dca3544825ec8b484ee09b9d6934451d https://www.encodeproject.org/files/ENCFF825HOE/@@download/ENCFF825HOE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF712SUB bed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF106QPA, ENCFF399OUP, ENCFF863NZX 588447 ENCODE Processing Pipeline 2f6a5b7b6e4469253cdc20202b8f11c6 https://www.encodeproject.org/files/ENCFF712SUB/@@download/ENCFF712SUB.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF226UOV bed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF825HOE, ENCFF863NZX 458342 ENCODE Processing Pipeline 158fcd154602e905b3fd3a8dc844e628 https://www.encodeproject.org/files/ENCFF226UOV/@@download/ENCFF226UOV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF598NRF bigBed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF712SUB 1624483 ENCODE Processing Pipeline 0bffe0c8369eb851fe12228dd539c318 https://www.encodeproject.org/files/ENCFF598NRF/@@download/ENCFF598NRF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF272XCY bed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF106QPA, ENCFF399OUP, ENCFF825HOE, ENCFF863NZX 567702 ENCODE Processing Pipeline 489442c2a3f6083cdfd9ff455d7b3fb4 https://www.encodeproject.org/files/ENCFF272XCY/@@download/ENCFF272XCY.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF124ZRK bigBed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF226UOV 1308983 ENCODE Processing Pipeline 636259d79be69c596fed649f06fa4a9e https://www.encodeproject.org/files/ENCFF124ZRK/@@download/ENCFF124ZRK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF370VFX bigBed narrowPeak peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF272XCY 1556466 ENCODE Processing Pipeline a2f28a20b085b2b04c6363cf401bcc9c https://www.encodeproject.org/files/ENCFF370VFX/@@download/ENCFF370VFX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF353YQF bigWig signal p-value ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF825HOE, ENCFF863NZX 228177696 ENCODE Processing Pipeline d1f5986814e57b42c30b1171ab735544 https://www.encodeproject.org/files/ENCFF353YQF/@@download/ENCFF353YQF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF592UVN bigWig signal p-value ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF106QPA, ENCFF399OUP, ENCFF863NZX 410282080 ENCODE Processing Pipeline f40281e59b1a1a9358b78e90aff15913 https://www.encodeproject.org/files/ENCFF592UVN/@@download/ENCFF592UVN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF843XIY bigWig signal p-value ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF106QPA, ENCFF399OUP, ENCFF825HOE, ENCFF863NZX 397961664 ENCODE Processing Pipeline 87f979b154ca93ee99fcf7eb805a4021 https://www.encodeproject.org/files/ENCFF843XIY/@@download/ENCFF843XIY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF198NWB bigWig fold change over control ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF106QPA, ENCFF399OUP, ENCFF863NZX 657777732 ENCODE Processing Pipeline 0eea22051e6767251623b22785dccdb0 https://www.encodeproject.org/files/ENCFF198NWB/@@download/ENCFF198NWB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF098AYJ bigWig fold change over control ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF825HOE, ENCFF863NZX 746448642 ENCODE Processing Pipeline e65344856b0758be9318bdd6433855fa https://www.encodeproject.org/files/ENCFF098AYJ/@@download/ENCFF098AYJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF518VSR bigWig fold change over control ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF106QPA, ENCFF399OUP, ENCFF825HOE, ENCFF863NZX 1224258356 ENCODE Processing Pipeline cb8605fdecab5a0456ca686a0da32441 https://www.encodeproject.org/files/ENCFF518VSR/@@download/ENCFF518VSR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF384FJW bed narrowPeak replicated peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF226UOV, ENCFF272XCY, ENCFF712SUB 610086 ENCODE Processing Pipeline 151ff298a366ea5f6a98495e18edb156 https://www.encodeproject.org/files/ENCFF384FJW/@@download/ENCFF384FJW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF289BFD bigBed narrowPeak replicated peaks ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF384FJW 1358912 ENCODE Processing Pipeline 8bbb501ef5628f0be5eca1943366ac7e https://www.encodeproject.org/files/ENCFF289BFD/@@download/ENCFF289BFD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF002AOI fastq reads ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1302250653 Bing Ren, UCSD 37f161e87a675c63dbfbc127d5b0baf5 SRA:SRR3652263 https://www.encodeproject.org/files/ENCFF002AOI/@@download/ENCFF002AOI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQL/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, inconsistent control read length, low read length ENCFF002AOO fastq reads ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1178038127 Bing Ren, UCSD a07908a60994e4f44c9cc4c3e01ce717 SRA:SRR3652262 https://www.encodeproject.org/files/ENCFF002AOO/@@download/ENCFF002AOO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQO/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, inconsistent control read length, low read length ENCFF683EHP bam alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOI, ENCFF806TVZ 1084659415 ENCODE Processing Pipeline 55528880de3b1764e3af69be53675a50 https://www.encodeproject.org/files/ENCFF683EHP/@@download/ENCFF683EHP.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF632XMI bam alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOO, ENCFF806TVZ 826730087 ENCODE Processing Pipeline 689b92e0bc459171fb9132fb60c4c6cf https://www.encodeproject.org/files/ENCFF632XMI/@@download/ENCFF632XMI.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF980AIP bigBed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF569OFN 2093113 ENCODE Processing Pipeline 177b2d6e2d9c98f723b00d452c7c93cc https://www.encodeproject.org/files/ENCFF980AIP/@@download/ENCFF980AIP.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF994QFR bed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF632XMI, ENCFF683EHP, ENCFF786XLC 637199 ENCODE Processing Pipeline 078c05218364f01672b798ff0070a65b https://www.encodeproject.org/files/ENCFF994QFR/@@download/ENCFF994QFR.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF161OXM bigBed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF240CXG 2647391 ENCODE Processing Pipeline 3a723dad08b3b679e2dfd930dfdad617 https://www.encodeproject.org/files/ENCFF161OXM/@@download/ENCFF161OXM.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF151MLW bigBed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF994QFR 2060644 ENCODE Processing Pipeline 42d63b8c9c4c9028d6b80615136ed15a https://www.encodeproject.org/files/ENCFF151MLW/@@download/ENCFF151MLW.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF240CXG bed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF632XMI, ENCFF786XLC 1070300 ENCODE Processing Pipeline 47118db8d11750f12e42b2e1b056eb6d https://www.encodeproject.org/files/ENCFF240CXG/@@download/ENCFF240CXG.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF569OFN bed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF683EHP, ENCFF786XLC 827748 ENCODE Processing Pipeline 6815130574f247899bd6de17fab50c48 https://www.encodeproject.org/files/ENCFF569OFN/@@download/ENCFF569OFN.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF747UFB bigWig signal p-value ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF632XMI, ENCFF786XLC 398754162 ENCODE Processing Pipeline b73e6fbaefddcfe7492fa7d36376be13 https://www.encodeproject.org/files/ENCFF747UFB/@@download/ENCFF747UFB.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF268JWT bigWig signal p-value ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF683EHP, ENCFF786XLC 413421450 ENCODE Processing Pipeline 4cc8f85257701385c157e22419fa0094 https://www.encodeproject.org/files/ENCFF268JWT/@@download/ENCFF268JWT.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF187EMA bigWig signal p-value ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF632XMI, ENCFF683EHP, ENCFF786XLC 629789377 ENCODE Processing Pipeline fb7cc7d66d98bac1f82f397ed4af08d1 https://www.encodeproject.org/files/ENCFF187EMA/@@download/ENCFF187EMA.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF124PXR bigWig fold change over control ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF632XMI, ENCFF786XLC 384029502 ENCODE Processing Pipeline 0c25fd0c8093e136a21e18b286499ce5 https://www.encodeproject.org/files/ENCFF124PXR/@@download/ENCFF124PXR.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF007QDC bigWig fold change over control ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF683EHP, ENCFF786XLC 439143091 ENCODE Processing Pipeline b20778ddbb768b4c0091ded3fc7a5ac4 https://www.encodeproject.org/files/ENCFF007QDC/@@download/ENCFF007QDC.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF186THF bigWig fold change over control ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF632XMI, ENCFF683EHP, ENCFF786XLC 651402434 ENCODE Processing Pipeline b6cad265ac0fe54b85924aec0cfe1318 https://www.encodeproject.org/files/ENCFF186THF/@@download/ENCFF186THF.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF325HKI bigBed narrowPeak replicated peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF954FTZ 1642056 ENCODE Processing Pipeline 7d39b0eefd68aaa4e67e6e52f8e77b1c https://www.encodeproject.org/files/ENCFF325HKI/@@download/ENCFF325HKI.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF954FTZ bed narrowPeak replicated peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF240CXG, ENCFF569OFN, ENCFF994QFR 604797 ENCODE Processing Pipeline ec0f54a79349ef86172c097c2e1d2184 https://www.encodeproject.org/files/ENCFF954FTZ/@@download/ENCFF954FTZ.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF078DOR bam unfiltered alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOI, ENCFF018NEO 1168695423 ENCODE Processing Pipeline 8513a83e89838b5b6d7a4641e467982c https://www.encodeproject.org/files/ENCFF078DOR/@@download/ENCFF078DOR.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF903XSA bam unfiltered alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOO, ENCFF018NEO 1267633458 ENCODE Processing Pipeline 1c13601ef8fea60f972047142327e15c https://www.encodeproject.org/files/ENCFF903XSA/@@download/ENCFF903XSA.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF375GZK bam alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOI, ENCFF018NEO 842426146 ENCODE Processing Pipeline f08e85884d8bac36bbbfc7631114de8a https://www.encodeproject.org/files/ENCFF375GZK/@@download/ENCFF375GZK.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF945JAC bam alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOO, ENCFF018NEO 826465169 ENCODE Processing Pipeline 100e2c2d896d0c39a4cae40dbf75d855 https://www.encodeproject.org/files/ENCFF945JAC/@@download/ENCFF945JAC.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF366WON bed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF767URV, ENCFF945JAC 1046762 ENCODE Processing Pipeline fc2e0ce0559d147a0151e45097f63820 https://www.encodeproject.org/files/ENCFF366WON/@@download/ENCFF366WON.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF560CSE bed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF375GZK, ENCFF767URV 643669 ENCODE Processing Pipeline 4438a07dfb07f1c531ea4a76d15c1a49 https://www.encodeproject.org/files/ENCFF560CSE/@@download/ENCFF560CSE.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF184DDK bed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF375GZK, ENCFF424QZD, ENCFF767URV, ENCFF945JAC 715102 ENCODE Processing Pipeline 4dfb963be91220057b05d4803f036710 https://www.encodeproject.org/files/ENCFF184DDK/@@download/ENCFF184DDK.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF519XOD bigBed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF366WON 2608627 ENCODE Processing Pipeline b923b3580d930be6d63e90937022877a https://www.encodeproject.org/files/ENCFF519XOD/@@download/ENCFF519XOD.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF663KGM bigBed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF560CSE 1676433 ENCODE Processing Pipeline db7b86e89a11af17b6b7c10114236955 https://www.encodeproject.org/files/ENCFF663KGM/@@download/ENCFF663KGM.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF646IFX bigBed narrowPeak peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF184DDK 1833533 ENCODE Processing Pipeline 527f816f27a3abb497349925ae477683 https://www.encodeproject.org/files/ENCFF646IFX/@@download/ENCFF646IFX.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF071AOT bigWig signal p-value ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF767URV, ENCFF945JAC 396998835 ENCODE Processing Pipeline 73cb0922899cdf4b00f41d57d0d1408c https://www.encodeproject.org/files/ENCFF071AOT/@@download/ENCFF071AOT.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF686WUO bigWig signal p-value ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF375GZK, ENCFF767URV 340826527 ENCODE Processing Pipeline 42eff465d389b17945ae1bb117872428 https://www.encodeproject.org/files/ENCFF686WUO/@@download/ENCFF686WUO.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF297RCQ bigWig signal p-value ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF375GZK, ENCFF424QZD, ENCFF767URV, ENCFF945JAC 627158043 ENCODE Processing Pipeline 5be0e97e56846dbd09bd57991638b500 https://www.encodeproject.org/files/ENCFF297RCQ/@@download/ENCFF297RCQ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF869ZXJ bigWig fold change over control ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF767URV, ENCFF945JAC 391168454 ENCODE Processing Pipeline 0b3fd9ecafe5097fc006cb982936823d https://www.encodeproject.org/files/ENCFF869ZXJ/@@download/ENCFF869ZXJ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF130RFC bigWig fold change over control ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF375GZK, ENCFF767URV 341101530 ENCODE Processing Pipeline 030aca89343cb96f1fa07d8c4848c729 https://www.encodeproject.org/files/ENCFF130RFC/@@download/ENCFF130RFC.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF258NLM bigWig fold change over control ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF375GZK, ENCFF424QZD, ENCFF767URV, ENCFF945JAC 652005877 ENCODE Processing Pipeline f9e2a91973f6f9cb6b7cb3b7d23d2aa9 https://www.encodeproject.org/files/ENCFF258NLM/@@download/ENCFF258NLM.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF708TRR bed narrowPeak replicated peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF184DDK, ENCFF366WON, ENCFF560CSE 597163 ENCODE Processing Pipeline e637f593497ef22e0410bb97a25be3bb https://www.encodeproject.org/files/ENCFF708TRR/@@download/ENCFF708TRR.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF733JRQ bigBed narrowPeak replicated peaks ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF708TRR 1612634 ENCODE Processing Pipeline c772efc846c04c29697d774fb4b7f6b8 https://www.encodeproject.org/files/ENCFF733JRQ/@@download/ENCFF733JRQ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002BWH fastq reads ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 2039410862 Bing Ren, UCSD f21366f4415bdfa06d82544afb98e393 SRA:SRR3651379 https://www.encodeproject.org/files/ENCFF002BWH/@@download/ENCFF002BWH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQQ/ released low read length, inconsistent control read length ENCFF002BWF fastq reads ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1753142403 Bing Ren, UCSD 4e593cffaf15010e2ab7d9a518217a64 SRA:SRR3651380 https://www.encodeproject.org/files/ENCFF002BWF/@@download/ENCFF002BWF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQR/ released low read length, inconsistent control read length ENCFF129KXI bam alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002BWH, ENCFF806TVZ 1093661142 ENCODE Processing Pipeline 379b48004146bcd78941d6a324e85937 https://www.encodeproject.org/files/ENCFF129KXI/@@download/ENCFF129KXI.bam mm10-minimal archived low read length ENCFF190BDR bam alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002BWF, ENCFF806TVZ 992930797 ENCODE Processing Pipeline cdd4a49d976c6a936aeeb9eeda5dc659 https://www.encodeproject.org/files/ENCFF190BDR/@@download/ENCFF190BDR.bam mm10-minimal archived low read length ENCFF651IZQ bed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF129KXI, ENCFF148UUT, ENCFF791KJV 419313 ENCODE Processing Pipeline a9706f2f64c8c9d4017c86df27f988ba https://www.encodeproject.org/files/ENCFF651IZQ/@@download/ENCFF651IZQ.bed.gz mm10-minimal archived low read length ENCFF524DXY bed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF148UUT, ENCFF190BDR, ENCFF791KJV 463703 ENCODE Processing Pipeline 56274ff14537634c66e8eabf50a6784b https://www.encodeproject.org/files/ENCFF524DXY/@@download/ENCFF524DXY.bed.gz mm10-minimal archived low read length ENCFF876ENH bigBed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF651IZQ 836753 ENCODE Processing Pipeline 265411c3e3f1f1d32ffa6ec58d17ad48 https://www.encodeproject.org/files/ENCFF876ENH/@@download/ENCFF876ENH.bigBed mm10-minimal archived low read length ENCFF867FAA bigBed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF524DXY 890455 ENCODE Processing Pipeline 9aa6f6c5fdcce9ccd53eb805685d3ba8 https://www.encodeproject.org/files/ENCFF867FAA/@@download/ENCFF867FAA.bigBed mm10-minimal archived low read length ENCFF390VNZ bigBed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF117ZNE 1577197 ENCODE Processing Pipeline 33cd9edc6e6cd1771cfceeecc28a19be https://www.encodeproject.org/files/ENCFF390VNZ/@@download/ENCFF390VNZ.bigBed mm10-minimal archived low read length ENCFF117ZNE bed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF129KXI, ENCFF148UUT, ENCFF190BDR, ENCFF791KJV 709104 ENCODE Processing Pipeline 427db4e51ed9b0f5503b051e40db39e8 https://www.encodeproject.org/files/ENCFF117ZNE/@@download/ENCFF117ZNE.bed.gz mm10-minimal archived low read length ENCFF372LFW bigWig signal p-value ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF129KXI, ENCFF148UUT, ENCFF791KJV 509614192 ENCODE Processing Pipeline 7b741c4b77c328e5af7548a05c41c226 https://www.encodeproject.org/files/ENCFF372LFW/@@download/ENCFF372LFW.bigWig mm10-minimal archived low read length ENCFF617LPJ bigWig signal p-value ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF148UUT, ENCFF190BDR, ENCFF791KJV 473790651 ENCODE Processing Pipeline 9ec8313e0cc2005680f70d7776379549 https://www.encodeproject.org/files/ENCFF617LPJ/@@download/ENCFF617LPJ.bigWig mm10-minimal archived low read length ENCFF304FSE bigWig signal p-value ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF129KXI, ENCFF148UUT, ENCFF190BDR, ENCFF791KJV 712544669 ENCODE Processing Pipeline d0eeebe400b9f9cc7a4bf9b567695a5e https://www.encodeproject.org/files/ENCFF304FSE/@@download/ENCFF304FSE.bigWig mm10-minimal archived low read length ENCFF100GUG bigWig fold change over control ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF129KXI, ENCFF148UUT, ENCFF791KJV 574595031 ENCODE Processing Pipeline e6b1c0eb510c2d8563609cd754171e20 https://www.encodeproject.org/files/ENCFF100GUG/@@download/ENCFF100GUG.bigWig mm10-minimal archived low read length ENCFF861SFE bigWig fold change over control ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF148UUT, ENCFF190BDR, ENCFF791KJV 521267104 ENCODE Processing Pipeline fd3c95b78d7725104a8208f4bc775b86 https://www.encodeproject.org/files/ENCFF861SFE/@@download/ENCFF861SFE.bigWig mm10-minimal archived low read length ENCFF676DBG bigWig fold change over control ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF129KXI, ENCFF148UUT, ENCFF190BDR, ENCFF791KJV 840931668 ENCODE Processing Pipeline a0c041f697b7d1d07e3752942a6cb97a https://www.encodeproject.org/files/ENCFF676DBG/@@download/ENCFF676DBG.bigWig mm10-minimal archived low read length ENCFF997XJK bed narrowPeak replicated peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF117ZNE, ENCFF524DXY, ENCFF651IZQ 182071 ENCODE Processing Pipeline c1234354b67210357462c5d4c8b0e360 https://www.encodeproject.org/files/ENCFF997XJK/@@download/ENCFF997XJK.bed.gz mm10-minimal archived low read length ENCFF145QGN bigBed narrowPeak replicated peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF997XJK 462622 ENCODE Processing Pipeline a76e28d84f24cc5f196e114d5a3215c7 https://www.encodeproject.org/files/ENCFF145QGN/@@download/ENCFF145QGN.bigBed mm10-minimal archived low read length ENCFF943HMZ bam unfiltered alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002BWH, ENCFF018NEO 2547739852 ENCODE Processing Pipeline 770af60c6b024a85d68a3677f3aede03 https://www.encodeproject.org/files/ENCFF943HMZ/@@download/ENCFF943HMZ.bam mm10 released low read length ENCFF037QXG bam unfiltered alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002BWF, ENCFF018NEO 2213310988 ENCODE Processing Pipeline a3fc0f787d0142da7ea20472d3a8b56f https://www.encodeproject.org/files/ENCFF037QXG/@@download/ENCFF037QXG.bam mm10 released low read length ENCFF517AMP bam alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002BWF, ENCFF018NEO 992398165 ENCODE Processing Pipeline f928975f2d64fdd2b2d78ef02856a975 https://www.encodeproject.org/files/ENCFF517AMP/@@download/ENCFF517AMP.bam mm10 released low read length ENCFF714JCT bam alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002BWH, ENCFF018NEO 1092978746 ENCODE Processing Pipeline fe820674fd206d65cb4dcc4cd7a6f452 https://www.encodeproject.org/files/ENCFF714JCT/@@download/ENCFF714JCT.bam mm10 released low read length ENCFF666MUK bed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF419KAT, ENCFF714JCT, ENCFF955BDA 422990 ENCODE Processing Pipeline ddac48503b56da06b0c4c146f80ab5a1 https://www.encodeproject.org/files/ENCFF666MUK/@@download/ENCFF666MUK.bed.gz mm10 released low read length ENCFF658LIS bed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF419KAT, ENCFF517AMP, ENCFF955BDA 421192 ENCODE Processing Pipeline 8432d35f637071df8e9e81b97c69b684 https://www.encodeproject.org/files/ENCFF658LIS/@@download/ENCFF658LIS.bed.gz mm10 released low read length ENCFF630FYA bigBed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF666MUK 844465 ENCODE Processing Pipeline 9323fb38613d7a3b7252e06db9228c8e https://www.encodeproject.org/files/ENCFF630FYA/@@download/ENCFF630FYA.bigBed mm10 released low read length ENCFF968RWK bed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF419KAT, ENCFF517AMP, ENCFF714JCT, ENCFF955BDA 603930 ENCODE Processing Pipeline 047376089c4a1ff86d4f1deb0dddd4f8 https://www.encodeproject.org/files/ENCFF968RWK/@@download/ENCFF968RWK.bed.gz mm10 released low read length ENCFF308CLD bigBed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF658LIS 834113 ENCODE Processing Pipeline fde4d685738888887daa2ee8d946760f https://www.encodeproject.org/files/ENCFF308CLD/@@download/ENCFF308CLD.bigBed mm10 released low read length ENCFF413BNC bigBed narrowPeak peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF968RWK 1386201 ENCODE Processing Pipeline 2ae3ccc2031b2401c2b3ddbc4ff0ea8f https://www.encodeproject.org/files/ENCFF413BNC/@@download/ENCFF413BNC.bigBed mm10 released low read length ENCFF413BQI bigWig signal p-value ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF419KAT, ENCFF714JCT, ENCFF955BDA 594542967 ENCODE Processing Pipeline 8db456052e38ea3aeb30f60099015832 https://www.encodeproject.org/files/ENCFF413BQI/@@download/ENCFF413BQI.bigWig mm10 released low read length ENCFF577VVI bigWig signal p-value ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF419KAT, ENCFF517AMP, ENCFF955BDA 609465306 ENCODE Processing Pipeline 4349f23625648e7612463168abf7026f https://www.encodeproject.org/files/ENCFF577VVI/@@download/ENCFF577VVI.bigWig mm10 released low read length ENCFF896GUZ bigWig signal p-value ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF419KAT, ENCFF517AMP, ENCFF714JCT, ENCFF955BDA 857756765 ENCODE Processing Pipeline 087c144cb00fd3e7debf99d987aa48f6 https://www.encodeproject.org/files/ENCFF896GUZ/@@download/ENCFF896GUZ.bigWig mm10 released low read length ENCFF510TFK bigWig fold change over control ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF419KAT, ENCFF714JCT, ENCFF955BDA 568625669 ENCODE Processing Pipeline f9c9cf8e5213dbf46344e32266c18e4c https://www.encodeproject.org/files/ENCFF510TFK/@@download/ENCFF510TFK.bigWig mm10 released low read length ENCFF429CCZ bigWig fold change over control ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF419KAT, ENCFF517AMP, ENCFF955BDA 551684073 ENCODE Processing Pipeline 2e577389888f7af61af5c6d54cbb608b https://www.encodeproject.org/files/ENCFF429CCZ/@@download/ENCFF429CCZ.bigWig mm10 released low read length ENCFF114FKU bigWig fold change over control ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF419KAT, ENCFF517AMP, ENCFF714JCT, ENCFF955BDA 850511412 ENCODE Processing Pipeline a5c63ee24d010efab880044d8bf360f7 https://www.encodeproject.org/files/ENCFF114FKU/@@download/ENCFF114FKU.bigWig mm10 released low read length ENCFF101VZW bed narrowPeak replicated peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF658LIS, ENCFF666MUK, ENCFF968RWK 157872 ENCODE Processing Pipeline 343609360523caa9e0d6577dfba3926b https://www.encodeproject.org/files/ENCFF101VZW/@@download/ENCFF101VZW.bed.gz mm10 released low read length ENCFF279LXD bigBed narrowPeak replicated peaks ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF101VZW 418559 ENCODE Processing Pipeline b998dc5ae8b547814f2351b0a4c6ad5e https://www.encodeproject.org/files/ENCFF279LXD/@@download/ENCFF279LXD.bigBed mm10 released low read length ENCFF002BUW fastq reads ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 36 single-ended 617549834 Bing Ren, UCSD 57e5ce7bd4bd9df0198e85d7d3c863db SRA:SRR3651211 https://www.encodeproject.org/files/ENCFF002BUW/@@download/ENCFF002BUW.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BUY fastq reads ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 665140609 Bing Ren, UCSD 80f48fb497a0c0a05c75797514e1cf42 SRA:SRR3651212 https://www.encodeproject.org/files/ENCFF002BUY/@@download/ENCFF002BUY.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF243ZWK fastq reads ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 3 50 single-ended 993925597 Bing Ren, UCSD c9ae6e8e50836be7b86eb87191df1b5f SRA:SRR3651213 https://www.encodeproject.org/files/ENCFF243ZWK/@@download/ENCFF243ZWK.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF585YZT bam alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BUW, ENCFF002BUY, ENCFF243ZWK, ENCFF806TVZ 1235030866 ENCODE Processing Pipeline 93b2aab091be6496535013fc477bd951 https://www.encodeproject.org/files/ENCFF585YZT/@@download/ENCFF585YZT.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF411PVL fastq reads ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2912385924 Bing Ren, UCSD ec2bb0d2dc56c75ef93752c37f5d37e9 SRA:SRR3651214 https://www.encodeproject.org/files/ENCFF411PVL/@@download/ENCFF411PVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUI/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF051XWX bam alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF411PVL, ENCFF806TVZ 2286826044 ENCODE Processing Pipeline 0a66b240a3c5344b0527e56e8d220057 https://www.encodeproject.org/files/ENCFF051XWX/@@download/ENCFF051XWX.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF603GPO bed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF585YZT, ENCFF851KTA 1102875 ENCODE Processing Pipeline c9c317fedba9d8de629d17dc7cd9b27c https://www.encodeproject.org/files/ENCFF603GPO/@@download/ENCFF603GPO.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF737EJM bed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF051XWX, ENCFF265KAG 200434 ENCODE Processing Pipeline 65d044e8c7caaeb79bd5e512c62d9dc8 https://www.encodeproject.org/files/ENCFF737EJM/@@download/ENCFF737EJM.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF923KSF bigBed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF737EJM 459058 ENCODE Processing Pipeline 4754a651fdb530bdbe1eb0040a9dd24c https://www.encodeproject.org/files/ENCFF923KSF/@@download/ENCFF923KSF.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF465YCW bigBed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF235YJD 1339118 ENCODE Processing Pipeline 09473b80a0fdc6c3f550fe50a9774c52 https://www.encodeproject.org/files/ENCFF465YCW/@@download/ENCFF465YCW.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF178QQU bigWig signal p-value ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF051XWX, ENCFF265KAG, ENCFF585YZT, ENCFF851KTA 402591718 ENCODE Processing Pipeline 131e12dec40e8fa7e89a6e4ec96490d7 https://www.encodeproject.org/files/ENCFF178QQU/@@download/ENCFF178QQU.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF531CEU bigWig fold change over control ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF051XWX, ENCFF265KAG, ENCFF585YZT, ENCFF851KTA 893382351 ENCODE Processing Pipeline 6b7254253ec8b042e5a6a1287a29992b https://www.encodeproject.org/files/ENCFF531CEU/@@download/ENCFF531CEU.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF422UUY bigWig fold change over control ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF051XWX, ENCFF265KAG 581989691 ENCODE Processing Pipeline 3378638398427be9b7405f3b1765c217 https://www.encodeproject.org/files/ENCFF422UUY/@@download/ENCFF422UUY.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF235YJD bed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF051XWX, ENCFF265KAG, ENCFF585YZT, ENCFF851KTA 642157 ENCODE Processing Pipeline 7c722cfa91e29a9ef29889b7d822b294 https://www.encodeproject.org/files/ENCFF235YJD/@@download/ENCFF235YJD.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF808UDO bigWig signal p-value ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF051XWX, ENCFF265KAG 225675854 ENCODE Processing Pipeline ee6f330e986ee71f5ed398d564f839ea https://www.encodeproject.org/files/ENCFF808UDO/@@download/ENCFF808UDO.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF030RWY bigBed narrowPeak replicated peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF240FAI 845713 ENCODE Processing Pipeline 2b37b3c18d8386921f1b0efb78a73996 https://www.encodeproject.org/files/ENCFF030RWY/@@download/ENCFF030RWY.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF240FAI bed narrowPeak replicated peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF235YJD, ENCFF603GPO, ENCFF737EJM 393841 ENCODE Processing Pipeline ad25ef6acf41c60d363edc3fd2c4581d https://www.encodeproject.org/files/ENCFF240FAI/@@download/ENCFF240FAI.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF468PLX bam unfiltered alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUW, ENCFF002BUY, ENCFF018NEO, ENCFF243ZWK 2510898335 ENCODE Processing Pipeline 6aae68e3b9ad623495e07554b7a2f645 https://www.encodeproject.org/files/ENCFF468PLX/@@download/ENCFF468PLX.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF927MNA bam unfiltered alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF411PVL 2870660456 ENCODE Processing Pipeline 9d5d285f0575d554523cf1f24de27ff7 https://www.encodeproject.org/files/ENCFF927MNA/@@download/ENCFF927MNA.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF073PPI bam alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUW, ENCFF002BUY, ENCFF018NEO, ENCFF243ZWK 1063864185 ENCODE Processing Pipeline 1aed3a55ae2f3e4c3442d94bf600a02d https://www.encodeproject.org/files/ENCFF073PPI/@@download/ENCFF073PPI.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF460YML bam alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF411PVL 1774774256 ENCODE Processing Pipeline b2486cbbe574da0b65033ea546c81049 https://www.encodeproject.org/files/ENCFF460YML/@@download/ENCFF460YML.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF438WBP bed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF073PPI, ENCFF377IXU, ENCFF512NUW 1038667 ENCODE Processing Pipeline 9185e049e14a11e82ec5f652bcf9a1fa https://www.encodeproject.org/files/ENCFF438WBP/@@download/ENCFF438WBP.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF403NVR bed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF460YML, ENCFF512NUW 249909 ENCODE Processing Pipeline e9ecf51b0449531de3049feaec6f11fd https://www.encodeproject.org/files/ENCFF403NVR/@@download/ENCFF403NVR.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF265HCF bigBed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF879ALF 1344156 ENCODE Processing Pipeline 501416ec1b4356374ee5e86537b0f0c5 https://www.encodeproject.org/files/ENCFF265HCF/@@download/ENCFF265HCF.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF082XTB bigBed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF438WBP 2265588 ENCODE Processing Pipeline d814224204c40b693fcd8a39dc198a73 https://www.encodeproject.org/files/ENCFF082XTB/@@download/ENCFF082XTB.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF879ALF bed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073PPI, ENCFF377IXU, ENCFF460YML, ENCFF512NUW 644079 ENCODE Processing Pipeline 4a24f5dfdb13295a8602d89ed44fbd28 https://www.encodeproject.org/files/ENCFF879ALF/@@download/ENCFF879ALF.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF106FAL bigBed narrowPeak peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF403NVR 536769 ENCODE Processing Pipeline 3a9f29058d04d774c2ef6970e3848e55 https://www.encodeproject.org/files/ENCFF106FAL/@@download/ENCFF106FAL.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF031DDT bigWig signal p-value ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF073PPI, ENCFF377IXU, ENCFF512NUW 409391876 ENCODE Processing Pipeline 121b34ddd06bf5238da1df76c29ffa1e https://www.encodeproject.org/files/ENCFF031DDT/@@download/ENCFF031DDT.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF936RMC bigWig signal p-value ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF460YML, ENCFF512NUW 223269675 ENCODE Processing Pipeline 6dca2dc6663d44461a7ff4c852f236d9 https://www.encodeproject.org/files/ENCFF936RMC/@@download/ENCFF936RMC.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF541WYN bigWig signal p-value ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073PPI, ENCFF377IXU, ENCFF460YML, ENCFF512NUW 398545917 ENCODE Processing Pipeline a39436ff4cdf3aae0c4d29e9e4761f62 https://www.encodeproject.org/files/ENCFF541WYN/@@download/ENCFF541WYN.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF198VWC bigWig fold change over control ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF073PPI, ENCFF377IXU, ENCFF512NUW 412025000 ENCODE Processing Pipeline 0550f96dce422c77134cab4636fb8107 https://www.encodeproject.org/files/ENCFF198VWC/@@download/ENCFF198VWC.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF085GZQ bigWig fold change over control ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF460YML, ENCFF512NUW 559707248 ENCODE Processing Pipeline 114fc0f18787857a9bf47dec9bd458a9 https://www.encodeproject.org/files/ENCFF085GZQ/@@download/ENCFF085GZQ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF786GEI bigWig fold change over control ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073PPI, ENCFF377IXU, ENCFF460YML, ENCFF512NUW 877680084 ENCODE Processing Pipeline ddceff235499d8f7acb746c421d6fb5f https://www.encodeproject.org/files/ENCFF786GEI/@@download/ENCFF786GEI.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF091CFQ bed narrowPeak replicated peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF403NVR, ENCFF438WBP, ENCFF879ALF 391106 ENCODE Processing Pipeline 89831f62d3eba5eb53539ad44f3143a9 https://www.encodeproject.org/files/ENCFF091CFQ/@@download/ENCFF091CFQ.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF216LHS bigBed narrowPeak replicated peaks ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF091CFQ 835101 ENCODE Processing Pipeline e71f646f0ea01fa1ea56164a8292daf0 https://www.encodeproject.org/files/ENCFF216LHS/@@download/ENCFF216LHS.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001NTD fastq reads ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1006034741 Michael Snyder, Stanford c0ec135e18da3fa32128d450227aad80 https://www.encodeproject.org/files/ENCFF001NTD/@@download/ENCFF001NTD.fastq.gz Illumina Genome Analyzer released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NTH bigWig signal ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NTI 350322594 Michael Snyder, Stanford a170de9cfac5db38214005379042dd8b https://www.encodeproject.org/files/ENCFF001NTH/@@download/ENCFF001NTH.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NTI bam alignments ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NTD 909280083 Michael Snyder, Stanford 4af93b1ea955dc2d53ec96ace5572a67 https://www.encodeproject.org/files/ENCFF001NTI/@@download/ENCFF001NTI.bam mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NTF fastq reads ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 969057851 Michael Snyder, Stanford d1fe255f122110d491209723b8ae0f96 https://www.encodeproject.org/files/ENCFF001NTF/@@download/ENCFF001NTF.fastq.gz Illumina Genome Analyzer released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF025XNP bam unfiltered alignments ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NTD, ENCFF018NEO 1108034731 ENCODE Processing Pipeline 41d5be3db13dcb9163fb1ad3b72a6d41 https://www.encodeproject.org/files/ENCFF025XNP/@@download/ENCFF025XNP.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF951ALL bam alignments ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NTD, ENCFF018NEO 690243677 ENCODE Processing Pipeline 2a47875834f2b8f44b1fe34c13a1c8ee https://www.encodeproject.org/files/ENCFF951ALL/@@download/ENCFF951ALL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF386FUO bam unfiltered alignments ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NTF, ENCFF018NEO 1093686487 ENCODE Processing Pipeline d7c653ab5d91797d6b24421d5b9ac9fb https://www.encodeproject.org/files/ENCFF386FUO/@@download/ENCFF386FUO.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF893WLX bam alignments ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NTF, ENCFF018NEO 695145042 ENCODE Processing Pipeline 52da6a05e982ff36f9a8a48bd2cbe51e https://www.encodeproject.org/files/ENCFF893WLX/@@download/ENCFF893WLX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001KWB bam alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KWN 441415838 Bing Ren, UCSD 34adf5ab22213f44eb1b7593eff08ed5 https://www.encodeproject.org/files/ENCFF001KWB/@@download/ENCFF001KWB.bam mm9 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF001KWC bam alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KWU 1134170460 Bing Ren, UCSD 8ed647655683128baf628a7c4460525b https://www.encodeproject.org/files/ENCFF001KWC/@@download/ENCFF001KWC.bam mm9 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF001KWD bigBed broadPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZF 651030 Bing Ren, UCSD 9235b48baaee227afa2d2176ed60cb8b https://www.encodeproject.org/files/ENCFF001KWD/@@download/ENCFF001KWD.bigBed mm9 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF001KWH bigWig signal ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KWB, ENCFF001KWC 21606715 Bing Ren, UCSD 420a5e11654116d0ce91cce8b7186c2d https://www.encodeproject.org/files/ENCFF001KWH/@@download/ENCFF001KWH.bigWig mm9 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF001KWN fastq reads ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 550136411 Bing Ren, UCSD 1f92f29c07df9c8adfdb56809711df71 https://www.encodeproject.org/files/ENCFF001KWN/@@download/ENCFF001KWN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXE/ released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF001KWU fastq reads ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 45 single-ended 1537944483 Bing Ren, UCSD 08289ddb35dab5148dc5d6476606d140 https://www.encodeproject.org/files/ENCFF001KWU/@@download/ENCFF001KWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity control insufficient read depth ENCFF001XZF bed broadPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KWB, ENCFF001KWC 510049 Bing Ren, UCSD 4965b2163ad28c7d456208cb88ce8d07 https://www.encodeproject.org/files/ENCFF001XZF/@@download/ENCFF001XZF.bed.gz mm9 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF372DHR bam unfiltered alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWN, ENCFF018NEO 542529260 ENCODE Processing Pipeline d05a19919af3af26b2a296d0ee0357bc https://www.encodeproject.org/files/ENCFF372DHR/@@download/ENCFF372DHR.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF494JER bam alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWN, ENCFF018NEO 380039323 ENCODE Processing Pipeline cf374ed8816fb9a450013536e3a708a8 https://www.encodeproject.org/files/ENCFF494JER/@@download/ENCFF494JER.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF643XAO bigBed narrowPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF004YUW 3579808 ENCODE Processing Pipeline edc6914cf6770a588cc633cb61a0d154 https://www.encodeproject.org/files/ENCFF643XAO/@@download/ENCFF643XAO.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF093ALH bigWig signal p-value ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF494JER, ENCFF942MHC 192683017 ENCODE Processing Pipeline 0984670786bcf972d9d6c26a5618ac14 https://www.encodeproject.org/files/ENCFF093ALH/@@download/ENCFF093ALH.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF382VHJ bigWig fold change over control ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF494JER, ENCFF942MHC 116771723 ENCODE Processing Pipeline dcc6316c73b92bbc3e2d2891b89b620e https://www.encodeproject.org/files/ENCFF382VHJ/@@download/ENCFF382VHJ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF681VQK bam alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWU, ENCFF018NEO 805935842 ENCODE Processing Pipeline 8b5baea5b5b41bbc00ff403ad0d076c4 https://www.encodeproject.org/files/ENCFF681VQK/@@download/ENCFF681VQK.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF542AFK bam unfiltered alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWU, ENCFF018NEO 1267687482 ENCODE Processing Pipeline 687d32a411bfda33de5ad299997d047c https://www.encodeproject.org/files/ENCFF542AFK/@@download/ENCFF542AFK.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF004YUW bed narrowPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF494JER, ENCFF942MHC 1182577 ENCODE Processing Pipeline 328cbcfe241f62b62407921b0c75561a https://www.encodeproject.org/files/ENCFF004YUW/@@download/ENCFF004YUW.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF575NTV bed narrowPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288QPC, ENCFF681VQK, ENCFF942MHC 1399091 ENCODE Processing Pipeline 815ede697ee6697d1ee1952685f5fc75 https://www.encodeproject.org/files/ENCFF575NTV/@@download/ENCFF575NTV.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF538SFL bed narrowPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288QPC, ENCFF494JER, ENCFF681VQK, ENCFF942MHC 1291161 ENCODE Processing Pipeline de5257eb895c6ff75b60b0fff9713f82 https://www.encodeproject.org/files/ENCFF538SFL/@@download/ENCFF538SFL.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF364UGR bigBed narrowPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF575NTV 4048543 ENCODE Processing Pipeline e14976dd7b6039aa4c4501e4fd842b2c https://www.encodeproject.org/files/ENCFF364UGR/@@download/ENCFF364UGR.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF536JFC bigBed narrowPeak peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF538SFL 3758408 ENCODE Processing Pipeline 0edef0e1d8fb2514ff8e9e045a7725a8 https://www.encodeproject.org/files/ENCFF536JFC/@@download/ENCFF536JFC.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF024QLW bigWig signal p-value ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288QPC, ENCFF681VQK, ENCFF942MHC 188678982 ENCODE Processing Pipeline 17622bdeff3681c538d4c6c5072f0f58 https://www.encodeproject.org/files/ENCFF024QLW/@@download/ENCFF024QLW.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF123ZUP bigWig signal p-value ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288QPC, ENCFF494JER, ENCFF681VQK, ENCFF942MHC 183823806 ENCODE Processing Pipeline 8ac5e240582cb4b30035a8aea35f34b7 https://www.encodeproject.org/files/ENCFF123ZUP/@@download/ENCFF123ZUP.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF420QWK bigWig fold change over control ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288QPC, ENCFF681VQK, ENCFF942MHC 238083849 ENCODE Processing Pipeline bfcc1d0a5d2e9992ff6b3394d76e8000 https://www.encodeproject.org/files/ENCFF420QWK/@@download/ENCFF420QWK.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF147BMC bigWig fold change over control ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288QPC, ENCFF494JER, ENCFF681VQK, ENCFF942MHC 296782310 ENCODE Processing Pipeline 4ae5399cb3267c65f024d194ec252f8d https://www.encodeproject.org/files/ENCFF147BMC/@@download/ENCFF147BMC.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF743LDQ bed narrowPeak replicated peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF004YUW, ENCFF538SFL, ENCFF575NTV 1638894 ENCODE Processing Pipeline 0bfd4c7b58511c65bfb0ed6ade52a3e1 https://www.encodeproject.org/files/ENCFF743LDQ/@@download/ENCFF743LDQ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF163NAI bigBed narrowPeak replicated peaks ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF743LDQ 3528926 ENCODE Processing Pipeline 71c996a3b7e12a75829bc3119c6e9fa7 https://www.encodeproject.org/files/ENCFF163NAI/@@download/ENCFF163NAI.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF002ALM fastq reads ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1032955047 Bing Ren, UCSD 72a2692320fc9acc026a55e34328cea7 SRA:SRR3651321 https://www.encodeproject.org/files/ENCFF002ALM/@@download/ENCFF002ALM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released low read length, control low read depth, inconsistent control read length, low read depth ENCFF002ALN fastq reads ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1214887624 Bing Ren, UCSD 86cb9ec3d82c552bb0f2418703d9ca92 SRA:SRR3651320 https://www.encodeproject.org/files/ENCFF002ALN/@@download/ENCFF002ALN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQN/ released low read length, control low read depth, low read depth ENCFF374PDH bam alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALN, ENCFF806TVZ 680985194 ENCODE Processing Pipeline be0d18f74882e21fde85e3cf163b7af5 https://www.encodeproject.org/files/ENCFF374PDH/@@download/ENCFF374PDH.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF480HWS bam alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALM, ENCFF806TVZ 802664808 ENCODE Processing Pipeline 784ad5d05cc0445137ce2374a0091b07 https://www.encodeproject.org/files/ENCFF480HWS/@@download/ENCFF480HWS.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF310DQR bed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF480HWS 707926 ENCODE Processing Pipeline 8c89c8d3ac949fa89ff3a68375ba9a98 https://www.encodeproject.org/files/ENCFF310DQR/@@download/ENCFF310DQR.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF154NBP bed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF374PDH, ENCFF576KAS 897920 ENCODE Processing Pipeline f2cdf839a6e046df10c31c52d823ebc1 https://www.encodeproject.org/files/ENCFF154NBP/@@download/ENCFF154NBP.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF622LRZ bed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF374PDH, ENCFF480HWS, ENCFF576KAS 841211 ENCODE Processing Pipeline d59f85a587de92f27e56edb3c153bd0e https://www.encodeproject.org/files/ENCFF622LRZ/@@download/ENCFF622LRZ.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF032JWK bigBed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310DQR 2269118 ENCODE Processing Pipeline 51e89f84a18a86b3c11a3d70328c84cd https://www.encodeproject.org/files/ENCFF032JWK/@@download/ENCFF032JWK.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF765LYM bigBed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF622LRZ 2642269 ENCODE Processing Pipeline f5552cea4048dcd52e7f44dd375b75da https://www.encodeproject.org/files/ENCFF765LYM/@@download/ENCFF765LYM.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF956QYF bigBed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF154NBP 2776481 ENCODE Processing Pipeline f571185474a819d465ba61566d4d10f6 https://www.encodeproject.org/files/ENCFF956QYF/@@download/ENCFF956QYF.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF158VZU bigWig signal p-value ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF480HWS 359033325 ENCODE Processing Pipeline 2c48fe3c6f22c45f8954eaa724e9b8f8 https://www.encodeproject.org/files/ENCFF158VZU/@@download/ENCFF158VZU.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF045LCH bigWig signal p-value ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF374PDH, ENCFF576KAS 272064305 ENCODE Processing Pipeline 02b65916cda37b5a0f2100c9b44a5984 https://www.encodeproject.org/files/ENCFF045LCH/@@download/ENCFF045LCH.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF723TLG bigWig signal p-value ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF374PDH, ENCFF480HWS, ENCFF576KAS 575226205 ENCODE Processing Pipeline 9dbf2740a2b2b08a1c7ff015054ae910 https://www.encodeproject.org/files/ENCFF723TLG/@@download/ENCFF723TLG.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF061UML bigWig fold change over control ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF480HWS 353076442 ENCODE Processing Pipeline 71004430bda3b1aa98b37e0253b8d51e https://www.encodeproject.org/files/ENCFF061UML/@@download/ENCFF061UML.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF187YVN bigWig fold change over control ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF374PDH, ENCFF576KAS 282514331 ENCODE Processing Pipeline 2aad032c81883ff85a1a2fae4f16c307 https://www.encodeproject.org/files/ENCFF187YVN/@@download/ENCFF187YVN.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF264ZLJ bed narrowPeak replicated peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF154NBP, ENCFF310DQR, ENCFF622LRZ 827614 ENCODE Processing Pipeline 7410593c26d6cd3d953ec132aaaf61c8 https://www.encodeproject.org/files/ENCFF264ZLJ/@@download/ENCFF264ZLJ.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF630YGN bigWig fold change over control ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF374PDH, ENCFF480HWS, ENCFF576KAS 611670860 ENCODE Processing Pipeline 0175fb5d157a3f98c90f323fb90b2c62 https://www.encodeproject.org/files/ENCFF630YGN/@@download/ENCFF630YGN.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF516BCH bigBed narrowPeak replicated peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF264ZLJ 1981674 ENCODE Processing Pipeline 963418eebe3ba15a22db301c78edfcb4 https://www.encodeproject.org/files/ENCFF516BCH/@@download/ENCFF516BCH.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF559QYS bam unfiltered alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALN, ENCFF018NEO 1215092980 ENCODE Processing Pipeline bbe4632f44bb8f6d3ac03fbdf9f44861 https://www.encodeproject.org/files/ENCFF559QYS/@@download/ENCFF559QYS.bam mm10 released low read length, control low read depth, low read depth ENCFF079CRP bam unfiltered alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALM, ENCFF018NEO 1119283006 ENCODE Processing Pipeline dcc5a4fa8a840f022839db8da521cce6 https://www.encodeproject.org/files/ENCFF079CRP/@@download/ENCFF079CRP.bam mm10 released low read length, control low read depth, low read depth ENCFF663MJH bam alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALN, ENCFF018NEO 680871422 ENCODE Processing Pipeline c575ef3c210d53fbbb744b2914e923d6 https://www.encodeproject.org/files/ENCFF663MJH/@@download/ENCFF663MJH.bam mm10 released low read length, control low read depth, low read depth ENCFF623FDQ bam alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALM, ENCFF018NEO 802448458 ENCODE Processing Pipeline 04a7f313b5467e7d3fcc796a13bcbe91 https://www.encodeproject.org/files/ENCFF623FDQ/@@download/ENCFF623FDQ.bam mm10 released low read length, control low read depth, low read depth ENCFF841ZGW bigBed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175VZG 2777561 ENCODE Processing Pipeline b887d3293afe5590bbc0a37fd764ea04 https://www.encodeproject.org/files/ENCFF841ZGW/@@download/ENCFF841ZGW.bigBed mm10 released low read length, control low read depth, low read depth ENCFF175VZG bed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF663MJH 898109 ENCODE Processing Pipeline 8f7d7cf856a35999991d4bc0d5d6dc66 https://www.encodeproject.org/files/ENCFF175VZG/@@download/ENCFF175VZG.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF738TWN bigWig signal p-value ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF663MJH 297094868 ENCODE Processing Pipeline d3425f0fc8ad775c62415b174a9bfcd7 https://www.encodeproject.org/files/ENCFF738TWN/@@download/ENCFF738TWN.bigWig mm10 released low read length, control low read depth, low read depth ENCFF711NVF bigWig fold change over control ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF663MJH 282935966 ENCODE Processing Pipeline 148691e2a4a6622e16228f094d65dc75 https://www.encodeproject.org/files/ENCFF711NVF/@@download/ENCFF711NVF.bigWig mm10 released low read length, control low read depth, low read depth ENCFF537SFN bed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF623FDQ 706336 ENCODE Processing Pipeline 9e9d0982605d9d569cbb79f27da7b69a https://www.encodeproject.org/files/ENCFF537SFN/@@download/ENCFF537SFN.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF665FBR bigBed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF237WLS 2838948 ENCODE Processing Pipeline 60b1c142f8252d6a1c7480e15d02d71b https://www.encodeproject.org/files/ENCFF665FBR/@@download/ENCFF665FBR.bigBed mm10 released low read length, control low read depth, low read depth ENCFF237WLS bed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF623FDQ, ENCFF663MJH 912001 ENCODE Processing Pipeline 41d1d2b35c53792985c32f55689463f4 https://www.encodeproject.org/files/ENCFF237WLS/@@download/ENCFF237WLS.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF928ECT bigBed narrowPeak peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF537SFN 2264513 ENCODE Processing Pipeline ae284b01ea349c870ba978804be169ed https://www.encodeproject.org/files/ENCFF928ECT/@@download/ENCFF928ECT.bigBed mm10 released low read length, control low read depth, low read depth ENCFF481LSW bigWig signal p-value ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF623FDQ 352002115 ENCODE Processing Pipeline e23a6ff852d5aaec952c6c5247231bbc https://www.encodeproject.org/files/ENCFF481LSW/@@download/ENCFF481LSW.bigWig mm10 released low read length, control low read depth, low read depth ENCFF817GRD bigWig signal p-value ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF623FDQ, ENCFF663MJH 520811643 ENCODE Processing Pipeline 52749949da46dafa6a4976a12652ac3f https://www.encodeproject.org/files/ENCFF817GRD/@@download/ENCFF817GRD.bigWig mm10 released low read length, control low read depth, low read depth ENCFF791RQO bigWig fold change over control ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF623FDQ 346161710 ENCODE Processing Pipeline cc95d9b5ad99a5cc847074bd958787f5 https://www.encodeproject.org/files/ENCFF791RQO/@@download/ENCFF791RQO.bigWig mm10 released low read length, control low read depth, low read depth ENCFF592XTS bigWig fold change over control ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF623FDQ, ENCFF663MJH 638214065 ENCODE Processing Pipeline 0b3b746fed0a7a6280f03ab1529bb783 https://www.encodeproject.org/files/ENCFF592XTS/@@download/ENCFF592XTS.bigWig mm10 released low read length, control low read depth, low read depth ENCFF375ZVW bed narrowPeak replicated peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175VZG, ENCFF237WLS, ENCFF537SFN 882335 ENCODE Processing Pipeline 6d6ee7db854a129499c3d01115afb0d7 https://www.encodeproject.org/files/ENCFF375ZVW/@@download/ENCFF375ZVW.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF508BCB bigBed narrowPeak replicated peaks ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF375ZVW 2074520 ENCODE Processing Pipeline fa0a2a8186964b451f6377c2facc8148 https://www.encodeproject.org/files/ENCFF508BCB/@@download/ENCFF508BCB.bigBed mm10 released low read length, control low read depth, low read depth ENCFF002AKO fastq reads ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1370336438 Bing Ren, UCSD 783af36a6c174a04a6b7b9ace364b4e0 SRA:SRR3651726 https://www.encodeproject.org/files/ENCFF002AKO/@@download/ENCFF002AKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF002AKP fastq reads ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1341593152 Bing Ren, UCSD 03e30a7923987ecabd631e488f99269b SRA:SRR3651725 https://www.encodeproject.org/files/ENCFF002AKP/@@download/ENCFF002AKP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF976LCF bam alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKO, ENCFF806TVZ 982248501 ENCODE Processing Pipeline 52e157c717d49e62df0e9b232f9d41ae https://www.encodeproject.org/files/ENCFF976LCF/@@download/ENCFF976LCF.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF819DGL bam alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKP, ENCFF806TVZ 982319200 ENCODE Processing Pipeline 42d481a9f02efe204f1043db669cb78e https://www.encodeproject.org/files/ENCFF819DGL/@@download/ENCFF819DGL.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF188FDE bed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF528CCC, ENCFF819DGL, ENCFF976LCF 776169 ENCODE Processing Pipeline b97565242bb3bb13c051b9721f23cd81 https://www.encodeproject.org/files/ENCFF188FDE/@@download/ENCFF188FDE.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF057HUN bed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF819DGL 844174 ENCODE Processing Pipeline 82b94accf750344887e46b0696caa8db https://www.encodeproject.org/files/ENCFF057HUN/@@download/ENCFF057HUN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF930ATA bigBed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF188FDE 2473881 ENCODE Processing Pipeline c57a1c94a4080170440cc85f3c12d43a https://www.encodeproject.org/files/ENCFF930ATA/@@download/ENCFF930ATA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF125RFO bigBed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF644XKZ 2291062 ENCODE Processing Pipeline eeaa8b2f416f2a64d0a5feff5ab8ab7a https://www.encodeproject.org/files/ENCFF125RFO/@@download/ENCFF125RFO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF644XKZ bed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF976LCF 715680 ENCODE Processing Pipeline e576b94f6ec1ee6af7f930ff8ec0d7fe https://www.encodeproject.org/files/ENCFF644XKZ/@@download/ENCFF644XKZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF806EIM bigBed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF057HUN 2671233 ENCODE Processing Pipeline a46d2874c7e93c8adbcd8aaaabc6daae https://www.encodeproject.org/files/ENCFF806EIM/@@download/ENCFF806EIM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF688QXN bigWig signal p-value ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF976LCF 541893664 ENCODE Processing Pipeline 8d84165e6bb5ebe29076945b3d45b459 https://www.encodeproject.org/files/ENCFF688QXN/@@download/ENCFF688QXN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF679QJM bigWig signal p-value ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF819DGL 489122846 ENCODE Processing Pipeline 656f8df063701d898a84647018ccb818 https://www.encodeproject.org/files/ENCFF679QJM/@@download/ENCFF679QJM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF481SOP bigWig signal p-value ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF528CCC, ENCFF819DGL, ENCFF976LCF 633784812 ENCODE Processing Pipeline 50ec0ccf027d5b2f6901d5d041ba7755 https://www.encodeproject.org/files/ENCFF481SOP/@@download/ENCFF481SOP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF125YJT bigWig fold change over control ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF976LCF 487043843 ENCODE Processing Pipeline 0dc1289e9eb9975515ffe1b8ccfaed36 https://www.encodeproject.org/files/ENCFF125YJT/@@download/ENCFF125YJT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF242VUF bigWig fold change over control ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF819DGL 455940779 ENCODE Processing Pipeline 9e68973c3c377a3e70cb9bcec5c4486a https://www.encodeproject.org/files/ENCFF242VUF/@@download/ENCFF242VUF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF297UGO bigWig fold change over control ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF528CCC, ENCFF819DGL, ENCFF976LCF 694025355 ENCODE Processing Pipeline b4268aed9940816f7273280aa86ed086 https://www.encodeproject.org/files/ENCFF297UGO/@@download/ENCFF297UGO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF580GXE bigBed narrowPeak replicated peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF766AUZ 2109380 ENCODE Processing Pipeline 8fb3734ad4894d34b30df969e382e527 https://www.encodeproject.org/files/ENCFF580GXE/@@download/ENCFF580GXE.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF766AUZ bed narrowPeak replicated peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF057HUN, ENCFF188FDE, ENCFF644XKZ 890087 ENCODE Processing Pipeline fe108bf0ee21a84c3e61181b5e3bbdbf https://www.encodeproject.org/files/ENCFF766AUZ/@@download/ENCFF766AUZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF449PML bam unfiltered alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKO, ENCFF018NEO 1504058465 ENCODE Processing Pipeline 3c383d30b0ea071827c598b90fa45f35 https://www.encodeproject.org/files/ENCFF449PML/@@download/ENCFF449PML.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF947WAM bam unfiltered alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKP, ENCFF018NEO 1421266346 ENCODE Processing Pipeline 72b9bf2f98a01045e8b7981871aa3efc https://www.encodeproject.org/files/ENCFF947WAM/@@download/ENCFF947WAM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF538ZCX bam alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKP, ENCFF018NEO 982188490 ENCODE Processing Pipeline eabee6b5341cca131068b9481083bb53 https://www.encodeproject.org/files/ENCFF538ZCX/@@download/ENCFF538ZCX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF228SYP bam alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKO, ENCFF018NEO 982026235 ENCODE Processing Pipeline dd12fb329e48555336453b5a6415f8fc https://www.encodeproject.org/files/ENCFF228SYP/@@download/ENCFF228SYP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF708ZOI bed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF228SYP, ENCFF411XWG 707366 ENCODE Processing Pipeline 766154a9a361de068d3c9e80e59e3efa https://www.encodeproject.org/files/ENCFF708ZOI/@@download/ENCFF708ZOI.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF869SGW bed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF538ZCX 746612 ENCODE Processing Pipeline 4a8c4da42b82f25b58f3ea8f5071d222 https://www.encodeproject.org/files/ENCFF869SGW/@@download/ENCFF869SGW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF218VFC bed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF228SYP, ENCFF411XWG, ENCFF538ZCX 786990 ENCODE Processing Pipeline eb8269483ef3e3fccf6c65e5cfc21cc8 https://www.encodeproject.org/files/ENCFF218VFC/@@download/ENCFF218VFC.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF266EVA bigBed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF708ZOI 2260506 ENCODE Processing Pipeline 08e529d74fc24d93ba279d934b9ee1d2 https://www.encodeproject.org/files/ENCFF266EVA/@@download/ENCFF266EVA.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF674CEP bigBed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF869SGW 2405033 ENCODE Processing Pipeline cbbbedd0fcfc496c84e4588774e10aed https://www.encodeproject.org/files/ENCFF674CEP/@@download/ENCFF674CEP.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF284LNH bigBed narrowPeak peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF218VFC 2506439 ENCODE Processing Pipeline 082907bb64b21bc30f52a124904058b0 https://www.encodeproject.org/files/ENCFF284LNH/@@download/ENCFF284LNH.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF588VWR bigWig signal p-value ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF228SYP, ENCFF411XWG 505712110 ENCODE Processing Pipeline cb6e21ae0be3887f1348c98b9736b485 https://www.encodeproject.org/files/ENCFF588VWR/@@download/ENCFF588VWR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF886MEZ bigWig signal p-value ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF538ZCX 365479562 ENCODE Processing Pipeline f28dc55db5125260ab95d632e75f017c https://www.encodeproject.org/files/ENCFF886MEZ/@@download/ENCFF886MEZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF477ZSN bigWig signal p-value ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF228SYP, ENCFF411XWG, ENCFF538ZCX 694165928 ENCODE Processing Pipeline 72091570f54976e79359ef4b4f02a7cb https://www.encodeproject.org/files/ENCFF477ZSN/@@download/ENCFF477ZSN.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF657GPZ bigWig fold change over control ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF228SYP, ENCFF411XWG 453770496 ENCODE Processing Pipeline aeb6379e656d48da3d5d203f79cb6004 https://www.encodeproject.org/files/ENCFF657GPZ/@@download/ENCFF657GPZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF266BLU bigWig fold change over control ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF538ZCX 367984792 ENCODE Processing Pipeline f2e44978a490af5e78f6d292e15529bb https://www.encodeproject.org/files/ENCFF266BLU/@@download/ENCFF266BLU.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF921KVA bigWig fold change over control ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF228SYP, ENCFF411XWG, ENCFF538ZCX 740271140 ENCODE Processing Pipeline d1482c8b36a100645395824ff8462df5 https://www.encodeproject.org/files/ENCFF921KVA/@@download/ENCFF921KVA.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF536OML bed narrowPeak replicated peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF218VFC, ENCFF708ZOI, ENCFF869SGW 909142 ENCODE Processing Pipeline 554367ce0551e6fbf1c1c6e6fcb29603 https://www.encodeproject.org/files/ENCFF536OML/@@download/ENCFF536OML.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF571WKK bigBed narrowPeak replicated peaks ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF536OML 2120907 ENCODE Processing Pipeline bad4dfd5a522f38726cf129dce896ca7 https://www.encodeproject.org/files/ENCFF571WKK/@@download/ENCFF571WKK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF001JXS bam alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001JYF 526383468 Bing Ren, UCSD 6460edcabbfc36635826dbd8bdbab259 https://www.encodeproject.org/files/ENCFF001JXS/@@download/ENCFF001JXS.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF001JXT bam alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001JYG 647723621 Bing Ren, UCSD a0b311e9b4afce168d0b0b28725e9ff6 https://www.encodeproject.org/files/ENCFF001JXT/@@download/ENCFF001JXT.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF001JXU bigBed broadPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XVW 507206 Bing Ren, UCSD ae9768b4d58a4e03c2a898b23ffda734 https://www.encodeproject.org/files/ENCFF001JXU/@@download/ENCFF001JXU.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF001JXX bigWig signal ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001JXS, ENCFF001JXT 50228198 Bing Ren, UCSD c52dce710a34d31b9b5694ce581ee00b https://www.encodeproject.org/files/ENCFF001JXX/@@download/ENCFF001JXX.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF001JYF fastq reads ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 797670400 Bing Ren, UCSD cb77d8fb1502ad258438a8b252939b3a https://www.encodeproject.org/files/ENCFF001JYF/@@download/ENCFF001JYF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYN/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF001JYG fastq reads ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 800970115 Bing Ren, UCSD 938ebf82f335c4f1d86f5c3cc1140732 https://www.encodeproject.org/files/ENCFF001JYG/@@download/ENCFF001JYG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYM/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF001XVW bed broadPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001JXS, ENCFF001JXT 281765 Bing Ren, UCSD 389b05d21facfb655416d550ab114752 https://www.encodeproject.org/files/ENCFF001XVW/@@download/ENCFF001XVW.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF308ZMW bam unfiltered alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JYG, ENCFF018NEO 839250336 ENCODE Processing Pipeline 009161d9782ca6980ef57b08a48d60f3 https://www.encodeproject.org/files/ENCFF308ZMW/@@download/ENCFF308ZMW.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF259YKW bam unfiltered alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JYF, ENCFF018NEO 856784181 ENCODE Processing Pipeline a02d9ed0bdbde13a181b9489a5985854 https://www.encodeproject.org/files/ENCFF259YKW/@@download/ENCFF259YKW.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF250WTO bam alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JYG, ENCFF018NEO 506642894 ENCODE Processing Pipeline 7f402b825d01a904be02b34477694dac https://www.encodeproject.org/files/ENCFF250WTO/@@download/ENCFF250WTO.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF858GPK bam alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JYF, ENCFF018NEO 509601646 ENCODE Processing Pipeline 5b59873efba8b34f230920a61e980b98 https://www.encodeproject.org/files/ENCFF858GPK/@@download/ENCFF858GPK.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF312HZC bed narrowPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF858GPK 726834 ENCODE Processing Pipeline 05f5d28c555aa54b40e45cfff1ecab9d https://www.encodeproject.org/files/ENCFF312HZC/@@download/ENCFF312HZC.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF701JUT bigBed narrowPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF312HZC 2228144 ENCODE Processing Pipeline e2ca931ec2759b50d97d598237359156 https://www.encodeproject.org/files/ENCFF701JUT/@@download/ENCFF701JUT.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF232MSE bed narrowPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF250WTO, ENCFF543ZVH 965783 ENCODE Processing Pipeline 13dfb644bc67729ff10acabb6c4c07fc https://www.encodeproject.org/files/ENCFF232MSE/@@download/ENCFF232MSE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF901TIU bed narrowPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF249NVZ, ENCFF250WTO, ENCFF543ZVH, ENCFF858GPK 783240 ENCODE Processing Pipeline fb5865ab029004ba2b52f165b16ffa37 https://www.encodeproject.org/files/ENCFF901TIU/@@download/ENCFF901TIU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF471YHA bigBed narrowPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF232MSE 2886507 ENCODE Processing Pipeline a377e133166aff3f032a409e31654c69 https://www.encodeproject.org/files/ENCFF471YHA/@@download/ENCFF471YHA.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF772NVV bigBed narrowPeak peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF901TIU 2214788 ENCODE Processing Pipeline 377da6d658fac8c58b2099972aa9d1b0 https://www.encodeproject.org/files/ENCFF772NVV/@@download/ENCFF772NVV.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF128RBC bigWig signal p-value ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF858GPK 217556223 ENCODE Processing Pipeline 7db7431e62a6474d086e0c96a69ef014 https://www.encodeproject.org/files/ENCFF128RBC/@@download/ENCFF128RBC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF129PKT bigWig signal p-value ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF249NVZ, ENCFF250WTO, ENCFF543ZVH, ENCFF858GPK 332289152 ENCODE Processing Pipeline 74ace59e0a23e4325cb7e07d3aa015d3 https://www.encodeproject.org/files/ENCFF129PKT/@@download/ENCFF129PKT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF730VOI bigBed narrowPeak replicated peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF366WUW 1996434 ENCODE Processing Pipeline 89deb2147339fb7fd6e7a9d3f976a171 https://www.encodeproject.org/files/ENCFF730VOI/@@download/ENCFF730VOI.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF101AXQ bigWig signal p-value ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF250WTO, ENCFF543ZVH 172678636 ENCODE Processing Pipeline c849ab21583a2a3632b67ade0a21f7c3 https://www.encodeproject.org/files/ENCFF101AXQ/@@download/ENCFF101AXQ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF526APR bigWig fold change over control ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF858GPK 178364075 ENCODE Processing Pipeline 7a11dcdfa29aa7359c100d4f043143a4 https://www.encodeproject.org/files/ENCFF526APR/@@download/ENCFF526APR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF620KTZ bigWig fold change over control ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF249NVZ, ENCFF250WTO, ENCFF543ZVH, ENCFF858GPK 300955599 ENCODE Processing Pipeline afba96cda43f7a5a11d3397b092ef86d https://www.encodeproject.org/files/ENCFF620KTZ/@@download/ENCFF620KTZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF888UBM bigWig fold change over control ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF250WTO, ENCFF543ZVH 135880203 ENCODE Processing Pipeline 4f6e4cc39bc7a5ac276d53fcc6df08e5 https://www.encodeproject.org/files/ENCFF888UBM/@@download/ENCFF888UBM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF366WUW bed narrowPeak replicated peaks ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF232MSE, ENCFF312HZC, ENCFF901TIU 950749 ENCODE Processing Pipeline 421bee957ce95e822187f88646ac5326 https://www.encodeproject.org/files/ENCFF366WUW/@@download/ENCFF366WUW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF214HLL fastq reads ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1909310417 Bing Ren, UCSD 7d6fb742e8c9548610fe3762eb1744e7 SRA:SRR3652117 https://www.encodeproject.org/files/ENCFF214HLL/@@download/ENCFF214HLL.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF884YRX fastq reads ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1717086149 Bing Ren, UCSD 658e2c3949e4373b0dff0e77ebbf94e2 SRA:SRR3652115 https://www.encodeproject.org/files/ENCFF884YRX/@@download/ENCFF884YRX.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF751HMJ fastq reads ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 463920290 Bing Ren, UCSD 1c2d255ac2e2652af5cd4a6b6d3f0882 SRA:SRR3652118 https://www.encodeproject.org/files/ENCFF751HMJ/@@download/ENCFF751HMJ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF789POT fastq reads ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 459338044 Bing Ren, UCSD 019a4404519f01c35c6215e222b36662 SRA:SRR3652116 https://www.encodeproject.org/files/ENCFF789POT/@@download/ENCFF789POT.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF405LXU bam alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF214HLL, ENCFF751HMJ, ENCFF806TVZ 2365805744 ENCODE Processing Pipeline 3b5459f9898b53ca10f8ceb37646589f https://www.encodeproject.org/files/ENCFF405LXU/@@download/ENCFF405LXU.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF980WPU bam alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF789POT, ENCFF806TVZ, ENCFF884YRX 2179171535 ENCODE Processing Pipeline b82e4519f0cd8f002515f21fdcbb09d9 https://www.encodeproject.org/files/ENCFF980WPU/@@download/ENCFF980WPU.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF203JQV bam unfiltered alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF214HLL, ENCFF751HMJ 3276926584 ENCODE Processing Pipeline 6aa36a40637416526824813e3443bab4 https://www.encodeproject.org/files/ENCFF203JQV/@@download/ENCFF203JQV.bam mm10 released sequencing runs labeled as technical replicates ENCFF058AUT bam unfiltered alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF789POT, ENCFF884YRX 3021217226 ENCODE Processing Pipeline 3c5e8f4fa6f67e99ab86c1d450880188 https://www.encodeproject.org/files/ENCFF058AUT/@@download/ENCFF058AUT.bam mm10 released sequencing runs labeled as technical replicates ENCFF399MAG bam alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF214HLL, ENCFF751HMJ 2365247636 ENCODE Processing Pipeline a14e56eb4170ffcf445dd9652308d694 https://www.encodeproject.org/files/ENCFF399MAG/@@download/ENCFF399MAG.bam mm10 released sequencing runs labeled as technical replicates ENCFF609XDL bam alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF789POT, ENCFF884YRX 2178643978 ENCODE Processing Pipeline 7c1b2609045572624000d39a94666811 https://www.encodeproject.org/files/ENCFF609XDL/@@download/ENCFF609XDL.bam mm10 released sequencing runs labeled as technical replicates ENCFF001IDK bam alignments ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IDX 1041985009 Barbara Wold, Caltech a28a29eaca99af8d06ce953fc3c38dc9 https://www.encodeproject.org/files/ENCFF001IDK/@@download/ENCFF001IDK.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001IDL bigBed narrowPeak peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUV 170716 Barbara Wold, Caltech 68bd1b51e4204270ed24d5523dc01254 https://www.encodeproject.org/files/ENCFF001IDL/@@download/ENCFF001IDL.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001IDM bigWig signal ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDK 79117281 Barbara Wold, Caltech f86456cb13ed3f1146ae155b9c35b58a https://www.encodeproject.org/files/ENCFF001IDM/@@download/ENCFF001IDM.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001IDX fastq reads ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1096025730 Barbara Wold, Caltech b794c3409f9a6c2947a186ed6bc225f2 https://www.encodeproject.org/files/ENCFF001IDX/@@download/ENCFF001IDX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001XUV bed narrowPeak peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDK 76517 Barbara Wold, Caltech df3d39235eaa9d207b7c782feb38d9a0 https://www.encodeproject.org/files/ENCFF001XUV/@@download/ENCFF001XUV.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF228MOR bam unfiltered alignments ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDX, ENCFF018NEO 1087660395 ENCODE Processing Pipeline e97d8724f382ced3d6ff60bd78ca246c https://www.encodeproject.org/files/ENCFF228MOR/@@download/ENCFF228MOR.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF586VMG bam alignments ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDX, ENCFF018NEO 460477938 ENCODE Processing Pipeline a6206673547f0f98662cf2a3b604974e https://www.encodeproject.org/files/ENCFF586VMG/@@download/ENCFF586VMG.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF286MSP bigWig signal p-value ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF586VMG, ENCFF993HAY 247405388 ENCODE Processing Pipeline be24833ea9899b9ef9742525c43690f4 https://www.encodeproject.org/files/ENCFF286MSP/@@download/ENCFF286MSP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF528UTW bigWig fold change over control ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF586VMG, ENCFF993HAY 157879410 ENCODE Processing Pipeline 61bb0875665393561c9acfbc8f797526 https://www.encodeproject.org/files/ENCFF528UTW/@@download/ENCFF528UTW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF356CFT bed narrowPeak peaks and background as input for IDR ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF586VMG, ENCFF993HAY 3509569 ENCODE Processing Pipeline 592bd3d342781651f5930945c8932563 https://www.encodeproject.org/files/ENCFF356CFT/@@download/ENCFF356CFT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF196YJL bigBed narrowPeak peaks and background as input for IDR ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF356CFT 7399133 ENCODE Processing Pipeline bed8d98d546aa0af781f6d4bbc05ccc5 https://www.encodeproject.org/files/ENCFF196YJL/@@download/ENCFF196YJL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF067KOQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF356CFT, ENCFF547MET 51448 ENCODE Processing Pipeline 581c95de62dfffd7a566a6f5d112a40a https://www.encodeproject.org/files/ENCFF067KOQ/@@download/ENCFF067KOQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF056QPK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF067KOQ 129727 ENCODE Processing Pipeline 88270deb2ba5b3e4c8408caeb6df2589 https://www.encodeproject.org/files/ENCFF056QPK/@@download/ENCFF056QPK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF002DTB fastq reads ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 1 36 single-ended 577088811 Bing Ren, UCSD f41c2eff740c8e6c429839744ee49e4b SRA:SRR3652299 https://www.encodeproject.org/files/ENCFF002DTB/@@download/ENCFF002DTB.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTC fastq reads ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 2 36 single-ended 662695754 Bing Ren, UCSD 3468b05db0b614e8801287334bdc5508 SRA:SRR3652300 https://www.encodeproject.org/files/ENCFF002DTC/@@download/ENCFF002DTC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTD fastq reads ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 2 36 single-ended 592504042 Bing Ren, UCSD c4eea6a999e7a232751a481c18963975 SRA:SRR3652296 https://www.encodeproject.org/files/ENCFF002DTD/@@download/ENCFF002DTD.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTE fastq reads ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 1 36 single-ended 670841937 Bing Ren, UCSD 2350333debf494b509f12fbd24489f11 SRA:SRR3652297 https://www.encodeproject.org/files/ENCFF002DTE/@@download/ENCFF002DTE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF319LUM fastq reads ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 3 50 single-ended 1106311370 Bing Ren, UCSD f371bf036fab63cc1cb491fd8fc859bf SRA:SRR3652298 https://www.encodeproject.org/files/ENCFF319LUM/@@download/ENCFF319LUM.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF446CJG fastq reads ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 3 50 single-ended 613151384 Bing Ren, UCSD bd8bcbe8d33b0d0f42d92a8f141c0da3 SRA:SRR3652301 https://www.encodeproject.org/files/ENCFF446CJG/@@download/ENCFF446CJG.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF563RFP bam alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF002DTD, ENCFF002DTE, ENCFF319LUM, ENCFF806TVZ 1303139245 ENCODE Processing Pipeline 5678879c829cf7347e8e304fc9592e69 https://www.encodeproject.org/files/ENCFF563RFP/@@download/ENCFF563RFP.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF144WHP bam alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF002DTB, ENCFF002DTC, ENCFF446CJG, ENCFF806TVZ 1257006626 ENCODE Processing Pipeline 82c6cb5e0f2cc1c0bbb9464a67e0402c https://www.encodeproject.org/files/ENCFF144WHP/@@download/ENCFF144WHP.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF798XKR bed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF033BGX, ENCFF144WHP, ENCFF972ZKQ 1643570 ENCODE Processing Pipeline fefd1ef7b9f91eda317b5833ad1d0557 https://www.encodeproject.org/files/ENCFF798XKR/@@download/ENCFF798XKR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF137DRD bigBed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF406LSB 3960819 ENCODE Processing Pipeline 1f2d0f1333e1a5527da8709f8f46ee4b https://www.encodeproject.org/files/ENCFF137DRD/@@download/ENCFF137DRD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF406LSB bed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF033BGX, ENCFF563RFP, ENCFF972ZKQ 2140529 ENCODE Processing Pipeline 57aecfc07bb545783798048c5c3babe6 https://www.encodeproject.org/files/ENCFF406LSB/@@download/ENCFF406LSB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF438TNM bed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF033BGX, ENCFF144WHP, ENCFF563RFP, ENCFF972ZKQ 1187436 ENCODE Processing Pipeline a0845c9b628be0279a369d073efdc9a2 https://www.encodeproject.org/files/ENCFF438TNM/@@download/ENCFF438TNM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF130GVF bigBed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF438TNM 2260644 ENCODE Processing Pipeline 37d80dadd996bf144b2bb81cb084fccc https://www.encodeproject.org/files/ENCFF130GVF/@@download/ENCFF130GVF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF749ZQH bigBed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF798XKR 3558388 ENCODE Processing Pipeline 07434556a8148e12d523d678c1738e8b https://www.encodeproject.org/files/ENCFF749ZQH/@@download/ENCFF749ZQH.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF285OSB bigWig signal p-value ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF033BGX, ENCFF144WHP, ENCFF972ZKQ 458378439 ENCODE Processing Pipeline 355bbc786648c1dc0fd741ea0e8855ae https://www.encodeproject.org/files/ENCFF285OSB/@@download/ENCFF285OSB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF299WBY bigWig signal p-value ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF033BGX, ENCFF563RFP, ENCFF972ZKQ 452599061 ENCODE Processing Pipeline 3418b585d01eed975d35baa7309973c4 https://www.encodeproject.org/files/ENCFF299WBY/@@download/ENCFF299WBY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF139UOV bigWig fold change over control ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF033BGX, ENCFF144WHP, ENCFF972ZKQ 463032826 ENCODE Processing Pipeline a3f97eb7a76d466305ee5feec52343c2 https://www.encodeproject.org/files/ENCFF139UOV/@@download/ENCFF139UOV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF333UOO bigWig signal p-value ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF033BGX, ENCFF144WHP, ENCFF563RFP, ENCFF972ZKQ 502955084 ENCODE Processing Pipeline 892f147b302b68a1a31d6de8002554db https://www.encodeproject.org/files/ENCFF333UOO/@@download/ENCFF333UOO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF676TGQ bigWig fold change over control ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF033BGX, ENCFF563RFP, ENCFF972ZKQ 464961513 ENCODE Processing Pipeline 0b82d104d14d6e95466b731d8db77bfe https://www.encodeproject.org/files/ENCFF676TGQ/@@download/ENCFF676TGQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF311UFC bed narrowPeak replicated peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF406LSB, ENCFF438TNM, ENCFF798XKR 1118841 ENCODE Processing Pipeline 52e90c5feb0d961c3e99c7c3c37731e6 https://www.encodeproject.org/files/ENCFF311UFC/@@download/ENCFF311UFC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF419NCY bigWig fold change over control ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF033BGX, ENCFF144WHP, ENCFF563RFP, ENCFF972ZKQ 757191313 ENCODE Processing Pipeline 7dc98eac7c6af9fc72ce62cd981ec855 https://www.encodeproject.org/files/ENCFF419NCY/@@download/ENCFF419NCY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF278IAN bigBed narrowPeak replicated peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF311UFC 1906586 ENCODE Processing Pipeline 143824f96f7766b3e56bd8d2f8615c5f https://www.encodeproject.org/files/ENCFF278IAN/@@download/ENCFF278IAN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF972ULX bam unfiltered alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DTD, ENCFF002DTE, ENCFF018NEO, ENCFF319LUM 2591519362 ENCODE Processing Pipeline 9fff5f719df014e4c8b9c8c8c0689d15 https://www.encodeproject.org/files/ENCFF972ULX/@@download/ENCFF972ULX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF646IZN bam unfiltered alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTB, ENCFF002DTC, ENCFF018NEO, ENCFF446CJG 2166989896 ENCODE Processing Pipeline fc799629f5e784c3570a53d167d0a609 https://www.encodeproject.org/files/ENCFF646IZN/@@download/ENCFF646IZN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF544ETA bam alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTB, ENCFF002DTC, ENCFF018NEO, ENCFF446CJG 1126799897 ENCODE Processing Pipeline b1c93f3a8873e9cd1d7bade83346b9fa https://www.encodeproject.org/files/ENCFF544ETA/@@download/ENCFF544ETA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF873ILA bam alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DTD, ENCFF002DTE, ENCFF018NEO, ENCFF319LUM 1116082056 ENCODE Processing Pipeline 9132ebcacef11d4fd4574c09fdadbe3c https://www.encodeproject.org/files/ENCFF873ILA/@@download/ENCFF873ILA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF716NLC bed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF544ETA 1628395 ENCODE Processing Pipeline dc086a301ef80eacfe7f2e3a1dc06e2a https://www.encodeproject.org/files/ENCFF716NLC/@@download/ENCFF716NLC.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF975CFR bed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF873ILA 2238304 ENCODE Processing Pipeline 563bb151f44f6225cfc7f817895671e6 https://www.encodeproject.org/files/ENCFF975CFR/@@download/ENCFF975CFR.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF369WMG bigBed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF716NLC 3529540 ENCODE Processing Pipeline 35189b72b6084c270ac7a8139a80be94 https://www.encodeproject.org/files/ENCFF369WMG/@@download/ENCFF369WMG.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF495BWE bed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF544ETA, ENCFF873ILA 1149085 ENCODE Processing Pipeline c02801b609ff23298ef4cf9c9a59edd7 https://www.encodeproject.org/files/ENCFF495BWE/@@download/ENCFF495BWE.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF818GXV bigBed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF975CFR 4145178 ENCODE Processing Pipeline 938b8c5d1e768c87997ccf78961b7410 https://www.encodeproject.org/files/ENCFF818GXV/@@download/ENCFF818GXV.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF114JBK bigBed narrowPeak peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF495BWE 2211197 ENCODE Processing Pipeline 15a3ca30db4613a99300618a6d390a23 https://www.encodeproject.org/files/ENCFF114JBK/@@download/ENCFF114JBK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF280OJL bigWig signal p-value ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF544ETA 475865555 ENCODE Processing Pipeline 2eb52530dfe0b3f7790d9df3c31666c9 https://www.encodeproject.org/files/ENCFF280OJL/@@download/ENCFF280OJL.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF898LMS bigWig signal p-value ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF873ILA 500948476 ENCODE Processing Pipeline 1dbdff4616a67e5bbe136eb182dd8afa https://www.encodeproject.org/files/ENCFF898LMS/@@download/ENCFF898LMS.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF615LMR bigWig signal p-value ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF544ETA, ENCFF873ILA 499027816 ENCODE Processing Pipeline abb0b95762ce41824b10d2b201eb275d https://www.encodeproject.org/files/ENCFF615LMR/@@download/ENCFF615LMR.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF604EDZ bigWig fold change over control ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF544ETA 458006524 ENCODE Processing Pipeline 607daa50db17598425ab445ce169fdab https://www.encodeproject.org/files/ENCFF604EDZ/@@download/ENCFF604EDZ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF301TRX bigWig fold change over control ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF873ILA 461035421 ENCODE Processing Pipeline 4048a7fe45fb85a52f6e9483e4a2d228 https://www.encodeproject.org/files/ENCFF301TRX/@@download/ENCFF301TRX.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF208SBA bigWig fold change over control ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF544ETA, ENCFF873ILA 747293434 ENCODE Processing Pipeline 421c51dd106b358742a34e0368220aaf https://www.encodeproject.org/files/ENCFF208SBA/@@download/ENCFF208SBA.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF856JND bed narrowPeak replicated peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF495BWE, ENCFF716NLC, ENCFF975CFR 1116538 ENCODE Processing Pipeline 610a86d345cb42370c337c1f5deff01f https://www.encodeproject.org/files/ENCFF856JND/@@download/ENCFF856JND.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF425QBW bigBed narrowPeak replicated peaks ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF856JND 1918696 ENCODE Processing Pipeline 7a04bd578d5fb1e2363eac0dd7d0a9ce https://www.encodeproject.org/files/ENCFF425QBW/@@download/ENCFF425QBW.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AMW fastq reads ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1147678796 Bing Ren, UCSD 88d79dfb3a0039e798ff03dab9d991d9 SRA:SRR3653102 https://www.encodeproject.org/files/ENCFF002AMW/@@download/ENCFF002AMW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQI/ released low read length, low read depth ENCFF002AMX fastq reads ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1104808824 Bing Ren, UCSD 2d46956e2e7b4e21a4d44790e53e850b SRA:SRR3653101 https://www.encodeproject.org/files/ENCFF002AMX/@@download/ENCFF002AMX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQJ/ released low read length, low read depth ENCFF100ZDV bam alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMX, ENCFF806TVZ 772696340 ENCODE Processing Pipeline e2e865ae5396a5f0ab01c777f3c7ce8e https://www.encodeproject.org/files/ENCFF100ZDV/@@download/ENCFF100ZDV.bam mm10-minimal archived low read length, low read depth ENCFF650OTR bam alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMW, ENCFF806TVZ 792751948 ENCODE Processing Pipeline 528b7de981e9ffa400c545bb98744967 https://www.encodeproject.org/files/ENCFF650OTR/@@download/ENCFF650OTR.bam mm10-minimal archived low read length, low read depth ENCFF801WCM bed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF650OTR, ENCFF991ANF 539059 ENCODE Processing Pipeline 3ea9e122e652bae24583c97d3a321775 https://www.encodeproject.org/files/ENCFF801WCM/@@download/ENCFF801WCM.bed.gz mm10-minimal archived low read length, low read depth ENCFF525ETG bed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100ZDV, ENCFF271DZZ, ENCFF650OTR, ENCFF991ANF 513649 ENCODE Processing Pipeline 70d57618cd756a26515e69c6c45cc171 https://www.encodeproject.org/files/ENCFF525ETG/@@download/ENCFF525ETG.bed.gz mm10-minimal archived low read length, low read depth ENCFF699WGH bigBed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF903QJI 1615200 ENCODE Processing Pipeline e5c82ec31a94158c3089d21882396e4c https://www.encodeproject.org/files/ENCFF699WGH/@@download/ENCFF699WGH.bigBed mm10-minimal archived low read length, low read depth ENCFF903QJI bed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF100ZDV, ENCFF271DZZ, ENCFF991ANF 493077 ENCODE Processing Pipeline 5e9fc3624dd68818edb089d0a009d67a https://www.encodeproject.org/files/ENCFF903QJI/@@download/ENCFF903QJI.bed.gz mm10-minimal archived low read length, low read depth ENCFF601EHC bigBed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF801WCM 1733249 ENCODE Processing Pipeline e2f9ae0db4b87439ce954981ee0a3a93 https://www.encodeproject.org/files/ENCFF601EHC/@@download/ENCFF601EHC.bigBed mm10-minimal archived low read length, low read depth ENCFF015XWI bigBed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF525ETG 1657280 ENCODE Processing Pipeline 6f1fb95439c5aa473d4c0fedfe38b858 https://www.encodeproject.org/files/ENCFF015XWI/@@download/ENCFF015XWI.bigBed mm10-minimal archived low read length, low read depth ENCFF317WJH bigWig signal p-value ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF100ZDV, ENCFF271DZZ, ENCFF991ANF 384337047 ENCODE Processing Pipeline 1563127799987023d1198af7f74b943f https://www.encodeproject.org/files/ENCFF317WJH/@@download/ENCFF317WJH.bigWig mm10-minimal archived low read length, low read depth ENCFF487FAI bigWig signal p-value ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF650OTR, ENCFF991ANF 402753540 ENCODE Processing Pipeline 8e86c449a340fb906ebda82ba9f54a68 https://www.encodeproject.org/files/ENCFF487FAI/@@download/ENCFF487FAI.bigWig mm10-minimal archived low read length, low read depth ENCFF409ZML bigWig signal p-value ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100ZDV, ENCFF271DZZ, ENCFF650OTR, ENCFF991ANF 614018840 ENCODE Processing Pipeline cc5c873de8d10cafbc7bb5775c536284 https://www.encodeproject.org/files/ENCFF409ZML/@@download/ENCFF409ZML.bigWig mm10-minimal archived low read length, low read depth ENCFF494ZAL bigWig fold change over control ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF650OTR, ENCFF991ANF 377395007 ENCODE Processing Pipeline 57cd6bf072bdf1b018c906afbeeb6e7d https://www.encodeproject.org/files/ENCFF494ZAL/@@download/ENCFF494ZAL.bigWig mm10-minimal archived low read length, low read depth ENCFF443FOE bigWig fold change over control ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF100ZDV, ENCFF271DZZ, ENCFF991ANF 387328128 ENCODE Processing Pipeline 6da64a0d125080cdea88b277f2c198f2 https://www.encodeproject.org/files/ENCFF443FOE/@@download/ENCFF443FOE.bigWig mm10-minimal archived low read length, low read depth ENCFF734HTT bigWig fold change over control ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100ZDV, ENCFF271DZZ, ENCFF650OTR, ENCFF991ANF 604164503 ENCODE Processing Pipeline c2bdc19282bc53a91c3d10382cb11fe6 https://www.encodeproject.org/files/ENCFF734HTT/@@download/ENCFF734HTT.bigWig mm10-minimal archived low read length, low read depth ENCFF381VKZ bigBed narrowPeak replicated peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF960JGW 1501598 ENCODE Processing Pipeline 3106d272cd356a21cf060239250816b5 https://www.encodeproject.org/files/ENCFF381VKZ/@@download/ENCFF381VKZ.bigBed mm10-minimal archived low read length, low read depth ENCFF960JGW bed narrowPeak replicated peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF525ETG, ENCFF801WCM, ENCFF903QJI 610710 ENCODE Processing Pipeline f77c30de827328d93c77b3417db31fe4 https://www.encodeproject.org/files/ENCFF960JGW/@@download/ENCFF960JGW.bed.gz mm10-minimal archived low read length, low read depth ENCFF945OVS bam unfiltered alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMW, ENCFF018NEO 1159293774 ENCODE Processing Pipeline 4e568378560c94fa3cd15b03d73b99ad https://www.encodeproject.org/files/ENCFF945OVS/@@download/ENCFF945OVS.bam mm10 released low read length, low read depth ENCFF794RXP bam alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMW, ENCFF018NEO 792602017 ENCODE Processing Pipeline aadc71e157a02660bdb39ebdc5a2430f https://www.encodeproject.org/files/ENCFF794RXP/@@download/ENCFF794RXP.bam mm10 released low read length, low read depth ENCFF558YDV bam unfiltered alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMX, ENCFF018NEO 1135876033 ENCODE Processing Pipeline 2b52ff5ea98a0733fee700393a8beb2d https://www.encodeproject.org/files/ENCFF558YDV/@@download/ENCFF558YDV.bam mm10 released low read length, low read depth ENCFF643WML bam alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMX, ENCFF018NEO 772519615 ENCODE Processing Pipeline 7ef37e3e4163bee0f045cce8098c998e https://www.encodeproject.org/files/ENCFF643WML/@@download/ENCFF643WML.bam mm10 released low read length, low read depth ENCFF737EXP bed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF643WML, ENCFF688CVA, ENCFF945UFA 493919 ENCODE Processing Pipeline 13fb70165340961925791de4b5cce2b5 https://www.encodeproject.org/files/ENCFF737EXP/@@download/ENCFF737EXP.bed.gz mm10 released low read length, low read depth ENCFF795IXK bigBed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF737EXP 1615286 ENCODE Processing Pipeline 8ea38d9859b76d218bca2b480dd42212 https://www.encodeproject.org/files/ENCFF795IXK/@@download/ENCFF795IXK.bigBed mm10 released low read length, low read depth ENCFF188VDK bed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF643WML, ENCFF688CVA, ENCFF794RXP, ENCFF945UFA 515540 ENCODE Processing Pipeline 0bed74c702e87c87ee0a0452f1c7e71c https://www.encodeproject.org/files/ENCFF188VDK/@@download/ENCFF188VDK.bed.gz mm10 released low read length, low read depth ENCFF456OLD bed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF794RXP, ENCFF945UFA 543044 ENCODE Processing Pipeline ed925169e8d384ee094fdc146d63a93a https://www.encodeproject.org/files/ENCFF456OLD/@@download/ENCFF456OLD.bed.gz mm10 released low read length, low read depth ENCFF298UKQ bigBed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF188VDK 1661516 ENCODE Processing Pipeline f7d8476f549bfe15401fbc72de6246ea https://www.encodeproject.org/files/ENCFF298UKQ/@@download/ENCFF298UKQ.bigBed mm10 released low read length, low read depth ENCFF042XLS bigBed narrowPeak peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF456OLD 1742217 ENCODE Processing Pipeline a5c96a1be5b988c73d4b95d629cf6556 https://www.encodeproject.org/files/ENCFF042XLS/@@download/ENCFF042XLS.bigBed mm10 released low read length, low read depth ENCFF344AJO bigWig signal p-value ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF643WML, ENCFF688CVA, ENCFF945UFA 469472192 ENCODE Processing Pipeline cd126b9648687ff5d8efff85299f5289 https://www.encodeproject.org/files/ENCFF344AJO/@@download/ENCFF344AJO.bigWig mm10 released low read length, low read depth ENCFF066WZQ bigWig signal p-value ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF794RXP, ENCFF945UFA 401308910 ENCODE Processing Pipeline 906cf2150b833b2ec06c9065fc49832d https://www.encodeproject.org/files/ENCFF066WZQ/@@download/ENCFF066WZQ.bigWig mm10 released low read length, low read depth ENCFF650PRD bigWig fold change over control ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF643WML, ENCFF688CVA, ENCFF945UFA 395750890 ENCODE Processing Pipeline 095cf097237ea6ba76bb1d5760b194e4 https://www.encodeproject.org/files/ENCFF650PRD/@@download/ENCFF650PRD.bigWig mm10 released low read length, low read depth ENCFF659SFO bigWig signal p-value ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF643WML, ENCFF688CVA, ENCFF794RXP, ENCFF945UFA 603118444 ENCODE Processing Pipeline 334016c58c72cea9d1cd66ceaeef2e02 https://www.encodeproject.org/files/ENCFF659SFO/@@download/ENCFF659SFO.bigWig mm10 released low read length, low read depth ENCFF288FCW bigWig fold change over control ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF794RXP, ENCFF945UFA 371146341 ENCODE Processing Pipeline 4f2a2201f8274b80e65b872558764a91 https://www.encodeproject.org/files/ENCFF288FCW/@@download/ENCFF288FCW.bigWig mm10 released low read length, low read depth ENCFF916AGC bigWig fold change over control ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF643WML, ENCFF688CVA, ENCFF794RXP, ENCFF945UFA 597391340 ENCODE Processing Pipeline b08c20e9a7c2629f41f80d46b29ff7fe https://www.encodeproject.org/files/ENCFF916AGC/@@download/ENCFF916AGC.bigWig mm10 released low read length, low read depth ENCFF578SCN bed narrowPeak replicated peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF188VDK, ENCFF456OLD, ENCFF737EXP 613448 ENCODE Processing Pipeline 03c088d31a09c55112d6cf3fcd1aa760 https://www.encodeproject.org/files/ENCFF578SCN/@@download/ENCFF578SCN.bed.gz mm10 released low read length, low read depth ENCFF770FHY bigBed narrowPeak replicated peaks ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF578SCN 1508228 ENCODE Processing Pipeline 73c7fbc0964e0f2be633eeba5b07e91a https://www.encodeproject.org/files/ENCFF770FHY/@@download/ENCFF770FHY.bigBed mm10 released low read length, low read depth ENCFF001IFA bigWig signal ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 1 1 ENCFF001IEX 89780745 Barbara Wold, Caltech 3001478b347637f5d62b9e40d073617c https://www.encodeproject.org/files/ENCFF001IFA/@@download/ENCFF001IFA.bigWig mm9 released low read depth ENCFF001IFB bigWig signal ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 2 1 128343904 Barbara Wold, Caltech cc6884771c7de79555546536f0e84ece https://www.encodeproject.org/files/ENCFF001IFB/@@download/ENCFF001IFB.bigWig mm9 released low read depth missing derived_from ENCFF001IFC fastq reads ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 2 1 50 single-ended 1197296148 Barbara Wold, Caltech 0d84929e5140f7b4c09727c2c2c41589 https://www.encodeproject.org/files/ENCFF001IFC/@@download/ENCFF001IFC.fastq.gz Illumina Genome Analyzer II released low read depth ENCFF001IFD fastq reads ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 1 1 50 single-ended 848477872 Barbara Wold, Caltech 79cab86a85e223053f9d02ec420c009c https://www.encodeproject.org/files/ENCFF001IFD/@@download/ENCFF001IFD.fastq.gz Illumina Genome Analyzer II released low read depth ENCFF001IFE bigWig signal ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 3 1 83490767 Barbara Wold, Caltech f9f74e100d8054bbf501b695a0d397db https://www.encodeproject.org/files/ENCFF001IFE/@@download/ENCFF001IFE.bigWig mm9 released low read depth missing derived_from ENCFF001IFI fastq reads ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 3 1 50 single-ended 769845764 Barbara Wold, Caltech 24ecf87e9a5635a454e8b75951d54691 https://www.encodeproject.org/files/ENCFF001IFI/@@download/ENCFF001IFI.fastq.gz Illumina Genome Analyzer II released low read depth ENCFF001IEX bam alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 1 ENCFF001IFD 899487607 Barbara Wold, Caltech 94f7681c9cebc9e83db062dca0d8cc5b https://www.encodeproject.org/files/ENCFF001IEX/@@download/ENCFF001IEX.bam mm9 released low read depth ENCFF848IXH bam unfiltered alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 1 ENCFF001IFD, ENCFF806TVZ 955241592 ENCODE Processing Pipeline fdbbb0e732a50417bdb31429333768b3 https://www.encodeproject.org/files/ENCFF848IXH/@@download/ENCFF848IXH.bam mm10-minimal archived low read depth ENCFF735RCE bam alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 3 50 ENCFF001IFI, ENCFF018NEO 621623211 ENCODE Processing Pipeline ebea59c53b106e731fd1d7c9fd85a565 https://www.encodeproject.org/files/ENCFF735RCE/@@download/ENCFF735RCE.bam mm10 released low read depth ENCFF266PHH bam alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 2 50 ENCFF001IFC, ENCFF018NEO 955557073 ENCODE Processing Pipeline 5b8eecf55eec5450c7c00e258969be29 https://www.encodeproject.org/files/ENCFF266PHH/@@download/ENCFF266PHH.bam mm10 released low read depth ENCFF875IDP bam alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 1 50 ENCFF001IFD, ENCFF018NEO 691603532 ENCODE Processing Pipeline a47aaeb77ac8f393ca8fcba9628ddab8 https://www.encodeproject.org/files/ENCFF875IDP/@@download/ENCFF875IDP.bam mm10 released low read depth ENCFF337TOR bam unfiltered alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 3 50 ENCFF001IFI, ENCFF018NEO 867221380 ENCODE Processing Pipeline 923879acc9422e9c338e601a3c6c882e https://www.encodeproject.org/files/ENCFF337TOR/@@download/ENCFF337TOR.bam mm10 released low read depth ENCFF568LSF bam unfiltered alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 2 50 ENCFF001IFC, ENCFF018NEO 1335228482 ENCODE Processing Pipeline 7bd840691fd281b16fc499b9627c6e0f https://www.encodeproject.org/files/ENCFF568LSF/@@download/ENCFF568LSF.bam mm10 released low read depth ENCFF315IFV bam unfiltered alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 1 50 ENCFF001IFD, ENCFF018NEO 956470962 ENCODE Processing Pipeline 6e09df6b2b6bfa018883a7c3154c6bc9 https://www.encodeproject.org/files/ENCFF315IFV/@@download/ENCFF315IFV.bam mm10 released low read depth ENCFF433HZI fastq reads ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2373543805 Bing Ren, UCSD 2595d01e2f13eb9ae51364ee1b9d43b4 SRA:SRR3652598 https://www.encodeproject.org/files/ENCFF433HZI/@@download/ENCFF433HZI.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/, /files/ENCFF788YDC/ released ENCFF206AIB fastq reads ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1878716575 Bing Ren, UCSD 0476ff3873df922135ebb8d74a3ef53f SRA:SRR3652597 https://www.encodeproject.org/files/ENCFF206AIB/@@download/ENCFF206AIB.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released ENCFF978JBO bam alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF433HZI, ENCFF806TVZ 1637981315 ENCODE Processing Pipeline 07da72cd81e095da8d9ba43c04dc9481 https://www.encodeproject.org/files/ENCFF978JBO/@@download/ENCFF978JBO.bam mm10-minimal archived ENCFF374YGB bam alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF206AIB, ENCFF806TVZ 1342227704 ENCODE Processing Pipeline 19e44519a58fa8932ef879e22d2aa2d5 https://www.encodeproject.org/files/ENCFF374YGB/@@download/ENCFF374YGB.bam mm10-minimal archived ENCFF025SEU bed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF374YGB, ENCFF670KZF 791331 ENCODE Processing Pipeline 166f77502b4c24efe8f4c25f27d6d190 https://www.encodeproject.org/files/ENCFF025SEU/@@download/ENCFF025SEU.bed.gz mm10-minimal archived ENCFF554SYT bigBed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF759QLN 2164917 ENCODE Processing Pipeline e5987c13a40bc672e8cbc296f5ca79c5 https://www.encodeproject.org/files/ENCFF554SYT/@@download/ENCFF554SYT.bigBed mm10-minimal archived ENCFF759QLN bed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF950FXV, ENCFF978JBO 1064706 ENCODE Processing Pipeline 1b1fa788ba9093f6838df2733436410d https://www.encodeproject.org/files/ENCFF759QLN/@@download/ENCFF759QLN.bed.gz mm10-minimal archived ENCFF444FOY bed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF374YGB, ENCFF670KZF, ENCFF950FXV, ENCFF978JBO 1133124 ENCODE Processing Pipeline 9011b66214ff19aa8aff6f84e8deff8a https://www.encodeproject.org/files/ENCFF444FOY/@@download/ENCFF444FOY.bed.gz mm10-minimal archived ENCFF614YCH bigBed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF025SEU 1704534 ENCODE Processing Pipeline 096fc42ec696247470efe924a36aee4e https://www.encodeproject.org/files/ENCFF614YCH/@@download/ENCFF614YCH.bigBed mm10-minimal archived ENCFF088DPE bigBed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF444FOY 2806330 ENCODE Processing Pipeline 4e6050fd8192bfabdd7035f8e36ce18a https://www.encodeproject.org/files/ENCFF088DPE/@@download/ENCFF088DPE.bigBed mm10-minimal archived ENCFF412UYK bigWig signal p-value ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF950FXV, ENCFF978JBO 533536655 ENCODE Processing Pipeline 487af3ff455407efe5b72b916936ee36 https://www.encodeproject.org/files/ENCFF412UYK/@@download/ENCFF412UYK.bigWig mm10-minimal archived ENCFF725CNM bigWig signal p-value ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF374YGB, ENCFF670KZF 618334562 ENCODE Processing Pipeline 5897081803314fe82771ace506e37505 https://www.encodeproject.org/files/ENCFF725CNM/@@download/ENCFF725CNM.bigWig mm10-minimal archived ENCFF819WAI bigWig signal p-value ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF374YGB, ENCFF670KZF, ENCFF950FXV, ENCFF978JBO 863790888 ENCODE Processing Pipeline d472033a96b51c326d650519cc5a2b39 https://www.encodeproject.org/files/ENCFF819WAI/@@download/ENCFF819WAI.bigWig mm10-minimal archived ENCFF267QTU bigWig fold change over control ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF950FXV, ENCFF978JBO 718231765 ENCODE Processing Pipeline 1bc784c15ef8acc37e1492192307c55f https://www.encodeproject.org/files/ENCFF267QTU/@@download/ENCFF267QTU.bigWig mm10-minimal archived ENCFF161EYV bigWig fold change over control ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF374YGB, ENCFF670KZF 626184255 ENCODE Processing Pipeline 0e8f3e132796aab9f4762058f511b4a0 https://www.encodeproject.org/files/ENCFF161EYV/@@download/ENCFF161EYV.bigWig mm10-minimal archived ENCFF033VFC bigWig fold change over control ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF374YGB, ENCFF670KZF, ENCFF950FXV, ENCFF978JBO 1208109366 ENCODE Processing Pipeline 5a0a2730b79185d4cd184c49002db9f7 https://www.encodeproject.org/files/ENCFF033VFC/@@download/ENCFF033VFC.bigWig mm10-minimal archived ENCFF431DPT bed narrowPeak replicated peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF025SEU, ENCFF444FOY, ENCFF759QLN 483836 ENCODE Processing Pipeline 8ab820aa0515e0590ac25edf7e1f252b https://www.encodeproject.org/files/ENCFF431DPT/@@download/ENCFF431DPT.bed.gz mm10-minimal archived ENCFF719KUB bigBed narrowPeak replicated peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF431DPT 1157636 ENCODE Processing Pipeline 743bd53c03ef2c77f9413402570feae9 https://www.encodeproject.org/files/ENCFF719KUB/@@download/ENCFF719KUB.bigBed mm10-minimal archived ENCFF686LVZ bam unfiltered alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF206AIB 2551082282 ENCODE Processing Pipeline 14d8f0cf3934a2c73b5f6a52dbb1e6f0 https://www.encodeproject.org/files/ENCFF686LVZ/@@download/ENCFF686LVZ.bam mm10 released ENCFF481LKT bam unfiltered alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF433HZI 3186141245 ENCODE Processing Pipeline 0c3ca727fdc190e58515d6879bbb3a1c https://www.encodeproject.org/files/ENCFF481LKT/@@download/ENCFF481LKT.bam mm10 released ENCFF594AGF bam alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF433HZI 1637356203 ENCODE Processing Pipeline 3bd6004bf8849a5620652a078ad7d4d4 https://www.encodeproject.org/files/ENCFF594AGF/@@download/ENCFF594AGF.bam mm10 released ENCFF731PUV bam alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF206AIB 1341570800 ENCODE Processing Pipeline 2c92ab68935067429684382c4006d889 https://www.encodeproject.org/files/ENCFF731PUV/@@download/ENCFF731PUV.bam mm10 released ENCFF656QWK bed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF594AGF, ENCFF731PUV, ENCFF741BBU 1241046 ENCODE Processing Pipeline 617d5414b329b1790db607b05ae60e96 https://www.encodeproject.org/files/ENCFF656QWK/@@download/ENCFF656QWK.bed.gz mm10 released ENCFF987BVJ bed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF731PUV, ENCFF741BBU 792856 ENCODE Processing Pipeline ff49639c77bcc064307f75e096eb439b https://www.encodeproject.org/files/ENCFF987BVJ/@@download/ENCFF987BVJ.bed.gz mm10 released ENCFF390VRT bigWig signal p-value ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF594AGF 613577635 ENCODE Processing Pipeline b7cc71719aaec34c756fdb9f121262ab https://www.encodeproject.org/files/ENCFF390VRT/@@download/ENCFF390VRT.bigWig mm10 released ENCFF025QXD bigBed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF656QWK 3059235 ENCODE Processing Pipeline 0ef0dd6555bb3e96a6cf7dacef17b078 https://www.encodeproject.org/files/ENCFF025QXD/@@download/ENCFF025QXD.bigBed mm10 released ENCFF933YDE bigWig signal p-value ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF594AGF, ENCFF731PUV, ENCFF741BBU 987471549 ENCODE Processing Pipeline 17155119eead06a955c0a98b79fadf5e https://www.encodeproject.org/files/ENCFF933YDE/@@download/ENCFF933YDE.bigWig mm10 released ENCFF545UDM bigWig fold change over control ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF594AGF 732317405 ENCODE Processing Pipeline d8f262add94c918c39d36ed18594241a https://www.encodeproject.org/files/ENCFF545UDM/@@download/ENCFF545UDM.bigWig mm10 released ENCFF301RYI bed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF594AGF 737223 ENCODE Processing Pipeline 883c0d4194f4c4e2f1a1a3012e2c825c https://www.encodeproject.org/files/ENCFF301RYI/@@download/ENCFF301RYI.bed.gz mm10 released ENCFF528FDH bigBed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF301RYI 1579909 ENCODE Processing Pipeline 6faf91d70426e05f7c41522afbc09402 https://www.encodeproject.org/files/ENCFF528FDH/@@download/ENCFF528FDH.bigBed mm10 released ENCFF117DWG bigBed narrowPeak peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF987BVJ 1709834 ENCODE Processing Pipeline c04fc6a1d97d1fa8f114d96631554c70 https://www.encodeproject.org/files/ENCFF117DWG/@@download/ENCFF117DWG.bigBed mm10 released ENCFF187THK bigWig signal p-value ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF731PUV, ENCFF741BBU 514068064 ENCODE Processing Pipeline f37bea7860c4353079099e27f84da6eb https://www.encodeproject.org/files/ENCFF187THK/@@download/ENCFF187THK.bigWig mm10 released ENCFF259IGK bigWig fold change over control ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF731PUV, ENCFF741BBU 627579619 ENCODE Processing Pipeline 4c7e246501b69163c147d23ba57c2c85 https://www.encodeproject.org/files/ENCFF259IGK/@@download/ENCFF259IGK.bigWig mm10 released ENCFF207AWO bed narrowPeak replicated peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF301RYI, ENCFF656QWK, ENCFF987BVJ 476059 ENCODE Processing Pipeline 954361b6f3bcfb91d6c1e698fb97a723 https://www.encodeproject.org/files/ENCFF207AWO/@@download/ENCFF207AWO.bed.gz mm10 released ENCFF476TXC bigBed narrowPeak replicated peaks ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF207AWO 1141645 ENCODE Processing Pipeline e7b6c3312c12d9972cae3f169bfa5628 https://www.encodeproject.org/files/ENCFF476TXC/@@download/ENCFF476TXC.bigBed mm10 released ENCFF137LNV bigWig fold change over control ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF594AGF, ENCFF731PUV, ENCFF741BBU 1252848530 ENCODE Processing Pipeline 44fa5c11b52522903d3e5e7c9b80b146 https://www.encodeproject.org/files/ENCFF137LNV/@@download/ENCFF137LNV.bigWig mm10 released ENCFF001ZSX fastq reads ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 925714270 Bing Ren, UCSD 801322a94d5011984aaac76866ce9f08 SRA:SRR3653307 https://www.encodeproject.org/files/ENCFF001ZSX/@@download/ENCFF001ZSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUT/ released low read length, control low read depth, low read depth ENCFF001ZSY fastq reads ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 829474573 Bing Ren, UCSD 89a9985e1d2ea30c40e33937b743e789 SRA:SRR3653308 https://www.encodeproject.org/files/ENCFF001ZSY/@@download/ENCFF001ZSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUU/ released low read length, control low read depth, low read depth ENCFF924JBL bam alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSX, ENCFF806TVZ 864805335 ENCODE Processing Pipeline ae4b14e71235b48fa6474e6c7fe21575 https://www.encodeproject.org/files/ENCFF924JBL/@@download/ENCFF924JBL.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF776CDB bam alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSY, ENCFF806TVZ 780082144 ENCODE Processing Pipeline 518534276896a75f9323c9a9eda818ac https://www.encodeproject.org/files/ENCFF776CDB/@@download/ENCFF776CDB.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF284BXG bed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF924JBL 992271 ENCODE Processing Pipeline ff3db3330d3bd4bf67c2349253726db5 https://www.encodeproject.org/files/ENCFF284BXG/@@download/ENCFF284BXG.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF861YLK bed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF776CDB, ENCFF807GND, ENCFF841RBB 1169494 ENCODE Processing Pipeline ca60d6e6be5d633a9f88b0ffe6864b5c https://www.encodeproject.org/files/ENCFF861YLK/@@download/ENCFF861YLK.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF646XTN bed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF776CDB, ENCFF807GND, ENCFF841RBB, ENCFF924JBL 757217 ENCODE Processing Pipeline bd0da10c5473e6d895b11873e8c6be21 https://www.encodeproject.org/files/ENCFF646XTN/@@download/ENCFF646XTN.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF377AUF bigBed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF861YLK 2728338 ENCODE Processing Pipeline 7108c2001158551c2c711ebb053b1c90 https://www.encodeproject.org/files/ENCFF377AUF/@@download/ENCFF377AUF.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF561FDE bigWig signal p-value ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF776CDB, ENCFF807GND, ENCFF841RBB 409810359 ENCODE Processing Pipeline c4848e650b42e200090e67bfa0958b7c https://www.encodeproject.org/files/ENCFF561FDE/@@download/ENCFF561FDE.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF274MFS bigWig signal p-value ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF776CDB, ENCFF807GND, ENCFF841RBB, ENCFF924JBL 530687650 ENCODE Processing Pipeline 875a5007d8301360a3693fea804f3dce https://www.encodeproject.org/files/ENCFF274MFS/@@download/ENCFF274MFS.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF145JAQ bigWig fold change over control ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF924JBL 422310164 ENCODE Processing Pipeline d118e8f9262c0304d0486b358799f284 https://www.encodeproject.org/files/ENCFF145JAQ/@@download/ENCFF145JAQ.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF478KSO bigWig fold change over control ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF776CDB, ENCFF807GND, ENCFF841RBB, ENCFF924JBL 637721070 ENCODE Processing Pipeline 6834c8a0c8bc76fde51a177c3a3491ea https://www.encodeproject.org/files/ENCFF478KSO/@@download/ENCFF478KSO.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF844OZT bed narrowPeak replicated peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF284BXG, ENCFF646XTN, ENCFF861YLK 815556 ENCODE Processing Pipeline 99357d34a7f974035c09d5053957d75c https://www.encodeproject.org/files/ENCFF844OZT/@@download/ENCFF844OZT.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF073UMF bigBed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF284BXG 2371812 ENCODE Processing Pipeline 7c0facd915f35cf96f75d59d379d4134 https://www.encodeproject.org/files/ENCFF073UMF/@@download/ENCFF073UMF.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF334VFL bigWig signal p-value ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF924JBL 433162435 ENCODE Processing Pipeline 8d3eb520a6fbf10494d8c7004849f134 https://www.encodeproject.org/files/ENCFF334VFL/@@download/ENCFF334VFL.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF289KLW bigBed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF646XTN 2230404 ENCODE Processing Pipeline 0f62bf0260d1897bc3fa661f6e8b1ba0 https://www.encodeproject.org/files/ENCFF289KLW/@@download/ENCFF289KLW.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF977GMS bigWig fold change over control ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF776CDB, ENCFF807GND, ENCFF841RBB 376295973 ENCODE Processing Pipeline 18f25be98df064eea9ea7edbea2aebf6 https://www.encodeproject.org/files/ENCFF977GMS/@@download/ENCFF977GMS.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF327PYT bigBed narrowPeak replicated peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF844OZT 1857849 ENCODE Processing Pipeline b8263d2e937c4cc11e5d6709d8d63d8c https://www.encodeproject.org/files/ENCFF327PYT/@@download/ENCFF327PYT.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF412DDJ bam unfiltered alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSX, ENCFF018NEO 1210413936 ENCODE Processing Pipeline 353cd7a6b7a704c9af748cc515230a31 https://www.encodeproject.org/files/ENCFF412DDJ/@@download/ENCFF412DDJ.bam mm10 released low read length, control low read depth, low read depth ENCFF125HSS bam unfiltered alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSY, ENCFF018NEO 1080019240 ENCODE Processing Pipeline 03bc1000e81b17a70e3fd781ff172b03 https://www.encodeproject.org/files/ENCFF125HSS/@@download/ENCFF125HSS.bam mm10 released low read length, control low read depth, low read depth ENCFF076JPB bam alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSX, ENCFF018NEO 864608129 ENCODE Processing Pipeline 038003e5debf4fc3b0c11a096bd9e882 https://www.encodeproject.org/files/ENCFF076JPB/@@download/ENCFF076JPB.bam mm10 released low read length, control low read depth, low read depth ENCFF543YTQ bam alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSY, ENCFF018NEO 779927579 ENCODE Processing Pipeline 43f418b33b2dcbf53fc3a15b9f1ee949 https://www.encodeproject.org/files/ENCFF543YTQ/@@download/ENCFF543YTQ.bam mm10 released low read length, control low read depth, low read depth ENCFF866SBL bed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF076JPB, ENCFF543YTQ, ENCFF804FRH 756133 ENCODE Processing Pipeline eb0ae773161f5a48a0c3c9dfd1e1394a https://www.encodeproject.org/files/ENCFF866SBL/@@download/ENCFF866SBL.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF478HME bigBed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015VTB 2373069 ENCODE Processing Pipeline cda023192bfc6a92eae151c07f47341c https://www.encodeproject.org/files/ENCFF478HME/@@download/ENCFF478HME.bigBed mm10 released low read length, control low read depth, low read depth ENCFF015VTB bed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF076JPB, ENCFF804FRH 992613 ENCODE Processing Pipeline 9f3c4cfcc25bcd2e40c7b2abefdbfcf0 https://www.encodeproject.org/files/ENCFF015VTB/@@download/ENCFF015VTB.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF192ZZK bed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF543YTQ, ENCFF804FRH 694739 ENCODE Processing Pipeline 87ad507bd2abf2547984d45506692b8e https://www.encodeproject.org/files/ENCFF192ZZK/@@download/ENCFF192ZZK.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF875SQU bigBed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF866SBL 2220134 ENCODE Processing Pipeline 5bb9cdf88516f2a0fd8dfc6d5e18e5d1 https://www.encodeproject.org/files/ENCFF875SQU/@@download/ENCFF875SQU.bigBed mm10 released low read length, control low read depth, low read depth ENCFF949RTT bigBed narrowPeak peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF192ZZK 2107045 ENCODE Processing Pipeline 57c2a6f8ae8f399e7801cf3bf057fb9b https://www.encodeproject.org/files/ENCFF949RTT/@@download/ENCFF949RTT.bigBed mm10 released low read length, control low read depth, low read depth ENCFF380DUP bigWig signal p-value ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF076JPB, ENCFF804FRH 444330519 ENCODE Processing Pipeline fe2e8cc3ed6c9a0c0d4a2f98c825f001 https://www.encodeproject.org/files/ENCFF380DUP/@@download/ENCFF380DUP.bigWig mm10 released low read length, control low read depth, low read depth ENCFF762NSB bigWig signal p-value ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF543YTQ, ENCFF804FRH 262127369 ENCODE Processing Pipeline 335b2faa78402ae3d63a46d72c5ff664 https://www.encodeproject.org/files/ENCFF762NSB/@@download/ENCFF762NSB.bigWig mm10 released low read length, control low read depth, low read depth ENCFF707EAC bigWig signal p-value ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF076JPB, ENCFF543YTQ, ENCFF804FRH 533121408 ENCODE Processing Pipeline 2572514f3acf0ca64845b9222034ad54 https://www.encodeproject.org/files/ENCFF707EAC/@@download/ENCFF707EAC.bigWig mm10 released low read length, control low read depth, low read depth ENCFF339GNC bigWig fold change over control ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF076JPB, ENCFF804FRH 421223353 ENCODE Processing Pipeline 56793ba70338f14448e68e3047185c7a https://www.encodeproject.org/files/ENCFF339GNC/@@download/ENCFF339GNC.bigWig mm10 released low read length, control low read depth, low read depth ENCFF031PHS bigWig fold change over control ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF543YTQ, ENCFF804FRH 291397846 ENCODE Processing Pipeline 5ca56744e9621a4a9cff7a4d4e2e0f23 https://www.encodeproject.org/files/ENCFF031PHS/@@download/ENCFF031PHS.bigWig mm10 released low read length, control low read depth, low read depth ENCFF583JQM bigWig fold change over control ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF076JPB, ENCFF543YTQ, ENCFF804FRH 640668302 ENCODE Processing Pipeline 51308575ef23b4b081c91f7d7f73f21a https://www.encodeproject.org/files/ENCFF583JQM/@@download/ENCFF583JQM.bigWig mm10 released low read length, control low read depth, low read depth ENCFF343AOE bed narrowPeak replicated peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015VTB, ENCFF192ZZK, ENCFF866SBL 767342 ENCODE Processing Pipeline 980966351d435ec0ff05e6aff53ab476 https://www.encodeproject.org/files/ENCFF343AOE/@@download/ENCFF343AOE.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF032ATE bigBed narrowPeak replicated peaks ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF343AOE 1762233 ENCODE Processing Pipeline 17abf9baaaaa3733b56e31bba3fa029f https://www.encodeproject.org/files/ENCFF032ATE/@@download/ENCFF032ATE.bigBed mm10 released low read length, control low read depth, low read depth ENCFF001NRR bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NRT 464642969 Michael Snyder, Stanford 6ccc7e6106f11b29bcb7c1f393af63f5 https://www.encodeproject.org/files/ENCFF001NRR/@@download/ENCFF001NRR.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NRS bigBed narrowPeak peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJK 824729 Michael Snyder, Stanford e2d8e55c135738157eeea1af2c0cabe6 https://www.encodeproject.org/files/ENCFF001NRS/@@download/ENCFF001NRS.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NRT fastq reads ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1140546705 Michael Snyder, Stanford 85ad30a02746948a0411a69228db9823 https://www.encodeproject.org/files/ENCFF001NRT/@@download/ENCFF001NRT.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NRV bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NRW 389225184 Michael Snyder, Stanford 76786356b9fc1846478ddba38c6b4bb6 https://www.encodeproject.org/files/ENCFF001NRV/@@download/ENCFF001NRV.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NRW fastq reads ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 807877562 Michael Snyder, Stanford 1c41df0cebeb2296bccf6e5c6570207d https://www.encodeproject.org/files/ENCFF001NRW/@@download/ENCFF001NRW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NRY bigWig signal ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRR, ENCFF001NRV 204427535 Michael Snyder, Stanford 532b987a3012e39597b84360c2de4bf7 https://www.encodeproject.org/files/ENCFF001NRY/@@download/ENCFF001NRY.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001YJK bed narrowPeak peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRR, ENCFF001NRV 323794 Michael Snyder, Stanford fd99789777a4f4a5ff8cff48b95c2d39 https://www.encodeproject.org/files/ENCFF001YJK/@@download/ENCFF001YJK.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF596VCN bam unfiltered alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NRW, ENCFF018NEO 855968200 ENCODE Processing Pipeline fea111b8b743146f673964de826e1593 https://www.encodeproject.org/files/ENCFF596VCN/@@download/ENCFF596VCN.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF840FLV bam unfiltered alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NRT, ENCFF018NEO 1188295263 ENCODE Processing Pipeline 6be7a7f75ffb442a04eee53655bdd00c https://www.encodeproject.org/files/ENCFF840FLV/@@download/ENCFF840FLV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF239NFK bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NRW, ENCFF018NEO 555939549 ENCODE Processing Pipeline 8af9e7bb063d487bba993ebf75ee0fd4 https://www.encodeproject.org/files/ENCFF239NFK/@@download/ENCFF239NFK.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF127ZPW bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NRT, ENCFF018NEO 626469364 ENCODE Processing Pipeline 457d60da20e2e91ad91639f1dc0a146b https://www.encodeproject.org/files/ENCFF127ZPW/@@download/ENCFF127ZPW.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF281XVX bed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127ZPW, ENCFF171OVT, ENCFF239NFK 5876129 ENCODE Processing Pipeline 23df01810ee04e8619139b985a0f29fa https://www.encodeproject.org/files/ENCFF281XVX/@@download/ENCFF281XVX.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF357YLS bigWig signal p-value ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF127ZPW, ENCFF171OVT 278339590 ENCODE Processing Pipeline 9baf4df3fd68b5ce08dcd69596229e6c https://www.encodeproject.org/files/ENCFF357YLS/@@download/ENCFF357YLS.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF203TPL bigBed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF446YOW 10613443 ENCODE Processing Pipeline a234b1cca385659d5078525f3ad97f63 https://www.encodeproject.org/files/ENCFF203TPL/@@download/ENCFF203TPL.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF758ELY bigWig signal p-value ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF239NFK 272939163 ENCODE Processing Pipeline b83b1d3f2148038adf7cf7f1fa4b91f4 https://www.encodeproject.org/files/ENCFF758ELY/@@download/ENCFF758ELY.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF439KTC bigWig signal p-value ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127ZPW, ENCFF171OVT, ENCFF239NFK 309522751 ENCODE Processing Pipeline b3ac12881ccf4e6603981d0d63c35353 https://www.encodeproject.org/files/ENCFF439KTC/@@download/ENCFF439KTC.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF580LGN bigWig fold change over control ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF127ZPW, ENCFF171OVT 269240649 ENCODE Processing Pipeline 000e14781ae4c59288fc18f9f5074a00 https://www.encodeproject.org/files/ENCFF580LGN/@@download/ENCFF580LGN.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF507TVF bigWig fold change over control ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF239NFK 260349243 ENCODE Processing Pipeline 52246e8e04f1d04db37b183fe456bbbc https://www.encodeproject.org/files/ENCFF507TVF/@@download/ENCFF507TVF.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF760BIB bigWig fold change over control ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127ZPW, ENCFF171OVT, ENCFF239NFK 430215358 ENCODE Processing Pipeline 08d55c9255121c43bcbfbfd6b3de5b7d https://www.encodeproject.org/files/ENCFF760BIB/@@download/ENCFF760BIB.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF446YOW bed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF127ZPW, ENCFF171OVT 5121407 ENCODE Processing Pipeline 7b2078cb40c9a5233b31cdbeea64b27f https://www.encodeproject.org/files/ENCFF446YOW/@@download/ENCFF446YOW.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF827MBR bed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF239NFK 5346849 ENCODE Processing Pipeline 714d7e52925d0891879a8eb1211c793d https://www.encodeproject.org/files/ENCFF827MBR/@@download/ENCFF827MBR.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF291AZL bigBed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF827MBR 12634067 ENCODE Processing Pipeline 7445fa5d32fc46e642b94327bc28658a https://www.encodeproject.org/files/ENCFF291AZL/@@download/ENCFF291AZL.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF947DWW bed narrowPeak conservative idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF281XVX, ENCFF446YOW, ENCFF547MET, ENCFF827MBR 661016 ENCODE Processing Pipeline ab3edde354bbcc83f2f9ca9124565892 https://www.encodeproject.org/files/ENCFF947DWW/@@download/ENCFF947DWW.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF054PAU bed narrowPeak optimal idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF281XVX, ENCFF446YOW, ENCFF547MET, ENCFF827MBR 736214 ENCODE Processing Pipeline e3802873a4c17c362ce5ea734845d1f1 https://www.encodeproject.org/files/ENCFF054PAU/@@download/ENCFF054PAU.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF704ZPN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF947DWW 1206264 ENCODE Processing Pipeline 9ba2f1930a1617752faff25c556597d5 https://www.encodeproject.org/files/ENCFF704ZPN/@@download/ENCFF704ZPN.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF022BJK bigBed narrowPeak peaks and background as input for IDR ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF281XVX 13090627 ENCODE Processing Pipeline 0aaefbfd3890c136a8895bc415970eea https://www.encodeproject.org/files/ENCFF022BJK/@@download/ENCFF022BJK.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF841BJW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF054PAU 1591337 ENCODE Processing Pipeline a523f22e3900fee7f78ab802bead8b99 https://www.encodeproject.org/files/ENCFF841BJW/@@download/ENCFF841BJW.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001ZUV fastq reads ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 757284826 Bing Ren, UCSD cfa17d2d40f1bb329f4e51098052eefd SRA:SRR3651334 https://www.encodeproject.org/files/ENCFF001ZUV/@@download/ENCFF001ZUV.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF001ZUW fastq reads ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 536766338 Bing Ren, UCSD 3edb8444bab6101e94bb2b1dae01bec5 SRA:SRR3651333 https://www.encodeproject.org/files/ENCFF001ZUW/@@download/ENCFF001ZUW.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF187OKC bam unfiltered alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUV, ENCFF806TVZ 1000839352 ENCODE Processing Pipeline 6214aa0db14717537a4da1372b062cb4 https://www.encodeproject.org/files/ENCFF187OKC/@@download/ENCFF187OKC.bam mm10-minimal archived low read length, low read depth ENCFF935HJM bam unfiltered alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUW, ENCFF806TVZ 711097839 ENCODE Processing Pipeline 999302171a292fbb5839ac91d433068c https://www.encodeproject.org/files/ENCFF935HJM/@@download/ENCFF935HJM.bam mm10-minimal archived low read length, low read depth ENCFF972ZKQ bam alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUW, ENCFF806TVZ 458236437 ENCODE Processing Pipeline 52e2773ea867eaee77fbaf2ed4eeef4c https://www.encodeproject.org/files/ENCFF972ZKQ/@@download/ENCFF972ZKQ.bam mm10-minimal archived low read length, low read depth ENCFF033BGX bam alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUV, ENCFF806TVZ 637383473 ENCODE Processing Pipeline b7249d2885f34d0817e8a9c4a238a4b8 https://www.encodeproject.org/files/ENCFF033BGX/@@download/ENCFF033BGX.bam mm10-minimal archived low read length, low read depth ENCFF360BSX bam unfiltered alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUV, ENCFF018NEO 1002337653 ENCODE Processing Pipeline ce894da2860da305d40ae69d2ec87287 https://www.encodeproject.org/files/ENCFF360BSX/@@download/ENCFF360BSX.bam mm10 released low read length, low read depth ENCFF908FVL bam unfiltered alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUW, ENCFF018NEO 712099015 ENCODE Processing Pipeline 859a8cbf889804a46ebd28202f7b8daa https://www.encodeproject.org/files/ENCFF908FVL/@@download/ENCFF908FVL.bam mm10 released low read length, low read depth ENCFF468BIZ bam alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUW, ENCFF018NEO 458059422 ENCODE Processing Pipeline 26987a2fd4a3d87f67c12bf10672f7b4 https://www.encodeproject.org/files/ENCFF468BIZ/@@download/ENCFF468BIZ.bam mm10 released low read length, low read depth ENCFF437LOC bam alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUV, ENCFF018NEO 637169204 ENCODE Processing Pipeline 322d064512a375573b7cfe64526c904c https://www.encodeproject.org/files/ENCFF437LOC/@@download/ENCFF437LOC.bam mm10 released low read length, low read depth ENCFF002ANR fastq reads ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1347189561 Bing Ren, UCSD 55c8d2afcc9346aa1c6cc0a0d6a1b3a5 SRA:SRR3651440 https://www.encodeproject.org/files/ENCFF002ANR/@@download/ENCFF002ANR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF002ANS fastq reads ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1612953281 Bing Ren, UCSD 386957bb8b09bcc67fd76a22992a7650 SRA:SRR3651441 https://www.encodeproject.org/files/ENCFF002ANS/@@download/ENCFF002ANS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF768OUB bam alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANS, ENCFF806TVZ 1184838214 ENCODE Processing Pipeline 368a16548f6e777d706b3cfc86b4a8cc https://www.encodeproject.org/files/ENCFF768OUB/@@download/ENCFF768OUB.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF214ZBV bam alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANR, ENCFF806TVZ 928176460 ENCODE Processing Pipeline aec7bd7c2caad014fa077dd3580fecfc https://www.encodeproject.org/files/ENCFF214ZBV/@@download/ENCFF214ZBV.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF912BUZ bed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF768OUB 1270842 ENCODE Processing Pipeline 7d998da5c92ae865d5f8b37342c65455 https://www.encodeproject.org/files/ENCFF912BUZ/@@download/ENCFF912BUZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF333NIK bed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF214ZBV, ENCFF351THT, ENCFF528CCC, ENCFF768OUB 996518 ENCODE Processing Pipeline cb6d91a2940f4f37d2063e26976c4333 https://www.encodeproject.org/files/ENCFF333NIK/@@download/ENCFF333NIK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF188RIJ bed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF214ZBV, ENCFF351THT, ENCFF528CCC 1067322 ENCODE Processing Pipeline 0fca885b5f7dc079e7dddeddfcf27365 https://www.encodeproject.org/files/ENCFF188RIJ/@@download/ENCFF188RIJ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF167QAP bigBed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF188RIJ 2598860 ENCODE Processing Pipeline c8efeaf37b665bcf59a3fb85996ff925 https://www.encodeproject.org/files/ENCFF167QAP/@@download/ENCFF167QAP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF535TJI bigBed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF912BUZ 3000892 ENCODE Processing Pipeline f43a95573a77b6fba96bad584965375b https://www.encodeproject.org/files/ENCFF535TJI/@@download/ENCFF535TJI.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF925HPD bigBed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF333NIK 3030004 ENCODE Processing Pipeline 4dc87bcda50a00bfeaab46bc6dd08c50 https://www.encodeproject.org/files/ENCFF925HPD/@@download/ENCFF925HPD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF113BYV bigWig signal p-value ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF214ZBV, ENCFF351THT, ENCFF528CCC 455788219 ENCODE Processing Pipeline 7e06c69e049afba339d6d8d3b37e4d2e https://www.encodeproject.org/files/ENCFF113BYV/@@download/ENCFF113BYV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF144UDH bigWig signal p-value ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF768OUB 627143163 ENCODE Processing Pipeline 8efe375c8878bfdc5ebbd62082ebaa7e https://www.encodeproject.org/files/ENCFF144UDH/@@download/ENCFF144UDH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF757KMF bigWig signal p-value ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF214ZBV, ENCFF351THT, ENCFF528CCC, ENCFF768OUB 735002726 ENCODE Processing Pipeline e5b7be5c9566621fe5de463cc70b68d6 https://www.encodeproject.org/files/ENCFF757KMF/@@download/ENCFF757KMF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF277MEQ bigWig fold change over control ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF214ZBV, ENCFF351THT, ENCFF528CCC 454544947 ENCODE Processing Pipeline fbddc1f0179fda577a778b0bef4ee879 https://www.encodeproject.org/files/ENCFF277MEQ/@@download/ENCFF277MEQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF003DFM bigWig fold change over control ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF351THT, ENCFF528CCC, ENCFF768OUB 558878243 ENCODE Processing Pipeline 69519484b2cb81f7706dc3246239747e https://www.encodeproject.org/files/ENCFF003DFM/@@download/ENCFF003DFM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF022NSL bigWig fold change over control ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF214ZBV, ENCFF351THT, ENCFF528CCC, ENCFF768OUB 825638655 ENCODE Processing Pipeline d6be3c228d3da945193cbbcde13d4127 https://www.encodeproject.org/files/ENCFF022NSL/@@download/ENCFF022NSL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF972PTY bed narrowPeak replicated peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF188RIJ, ENCFF333NIK, ENCFF912BUZ 870152 ENCODE Processing Pipeline 1ce0ee70fa470a82776e54c7400d2cf5 https://www.encodeproject.org/files/ENCFF972PTY/@@download/ENCFF972PTY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF527COC bigBed narrowPeak replicated peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF972PTY 2131472 ENCODE Processing Pipeline 22745062fe50faf74ba76018e8b43737 https://www.encodeproject.org/files/ENCFF527COC/@@download/ENCFF527COC.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF126QTF bam unfiltered alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANR, ENCFF018NEO 1503104822 ENCODE Processing Pipeline 75aef4edf30fc35d5512bfd1619e6fed https://www.encodeproject.org/files/ENCFF126QTF/@@download/ENCFF126QTF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF348SXR bam unfiltered alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANS, ENCFF018NEO 1777530788 ENCODE Processing Pipeline ed9d90231e5b906610b076d062ac9ca9 https://www.encodeproject.org/files/ENCFF348SXR/@@download/ENCFF348SXR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF633TGS bam alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANR, ENCFF018NEO 927938162 ENCODE Processing Pipeline 5ef97b956b240aa7f8ef69df877cd2c3 https://www.encodeproject.org/files/ENCFF633TGS/@@download/ENCFF633TGS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF851MGX bam alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANS, ENCFF018NEO 1184651798 ENCODE Processing Pipeline 74b9b07b6a9d7f67e297d3eff522ce52 https://www.encodeproject.org/files/ENCFF851MGX/@@download/ENCFF851MGX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF038VVN bed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF633TGS 1061305 ENCODE Processing Pipeline d66e3572a05d23aaf30cab3173fa8165 https://www.encodeproject.org/files/ENCFF038VVN/@@download/ENCFF038VVN.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF635HPB bed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF851MGX 738311 ENCODE Processing Pipeline edabf6827da4081915d2b1d0a43c5d2a https://www.encodeproject.org/files/ENCFF635HPB/@@download/ENCFF635HPB.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF114JTX bed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF633TGS, ENCFF851MGX 996900 ENCODE Processing Pipeline 2873be8947a715e06fcc4416ee21bc7b https://www.encodeproject.org/files/ENCFF114JTX/@@download/ENCFF114JTX.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF399MHW bigBed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF038VVN 2606867 ENCODE Processing Pipeline 9d18720b014e15820717f17e7ecaf217 https://www.encodeproject.org/files/ENCFF399MHW/@@download/ENCFF399MHW.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF622EJJ bigBed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF635HPB 2331785 ENCODE Processing Pipeline 680da14b08e4d2db4d3327eb5a9eb420 https://www.encodeproject.org/files/ENCFF622EJJ/@@download/ENCFF622EJJ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF168FRI bigBed narrowPeak peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF114JTX 3030749 ENCODE Processing Pipeline f80b33314a85fc0b4369366211782d60 https://www.encodeproject.org/files/ENCFF168FRI/@@download/ENCFF168FRI.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF507YLS bigWig signal p-value ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF633TGS 424607218 ENCODE Processing Pipeline 27b3aa3d0a30a740a844ba61df5ee46e https://www.encodeproject.org/files/ENCFF507YLS/@@download/ENCFF507YLS.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF812OWK bigWig signal p-value ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF851MGX 373181829 ENCODE Processing Pipeline 439c20a653d9092cbed8498381453a7c https://www.encodeproject.org/files/ENCFF812OWK/@@download/ENCFF812OWK.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF092OER bigWig signal p-value ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF633TGS, ENCFF851MGX 734931746 ENCODE Processing Pipeline 83f4322e9f6e20cec1b79b20771cbc1e https://www.encodeproject.org/files/ENCFF092OER/@@download/ENCFF092OER.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF683PXI bigWig fold change over control ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF411XWG, ENCFF633TGS 484382393 ENCODE Processing Pipeline 198e5a3be5d3ba50cfd5236a6872572e https://www.encodeproject.org/files/ENCFF683PXI/@@download/ENCFF683PXI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF710CNK bigWig fold change over control ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF851MGX 461348314 ENCODE Processing Pipeline 93dd4c86a706bef6f9aa5c6758cd0c9b https://www.encodeproject.org/files/ENCFF710CNK/@@download/ENCFF710CNK.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF719KVF bigWig fold change over control ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF633TGS, ENCFF851MGX 826785982 ENCODE Processing Pipeline 3a18919eeb79374a60ba1d3f796deb77 https://www.encodeproject.org/files/ENCFF719KVF/@@download/ENCFF719KVF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF006UBN bed narrowPeak replicated peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF038VVN, ENCFF114JTX, ENCFF635HPB 812310 ENCODE Processing Pipeline 50abfe4b877fd8b615723308a3e14584 https://www.encodeproject.org/files/ENCFF006UBN/@@download/ENCFF006UBN.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF617UYC bigBed narrowPeak replicated peaks ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006UBN 2003624 ENCODE Processing Pipeline 93af910434bac03dd15b554862f6fba7 https://www.encodeproject.org/files/ENCFF617UYC/@@download/ENCFF617UYC.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF220WCE fastq reads ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2063326039 Bing Ren, UCSD 876ae9b598ee1e27b8955fc60fa50677 SRA:SRR3651664 https://www.encodeproject.org/files/ENCFF220WCE/@@download/ENCFF220WCE.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released mild to moderate bottlenecking, inconsistent platforms ENCFF194BWG fastq reads ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2084776610 Bing Ren, UCSD dad08bd464808296263b66bc947629e8 SRA:SRR3651665 https://www.encodeproject.org/files/ENCFF194BWG/@@download/ENCFF194BWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF899GSP bam alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF220WCE, ENCFF806TVZ 1604298332 ENCODE Processing Pipeline bfe5ce6974c34fda0286715c9bea72dd https://www.encodeproject.org/files/ENCFF899GSP/@@download/ENCFF899GSP.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF351DTM bam alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF194BWG, ENCFF806TVZ 1557637404 ENCODE Processing Pipeline 65b326e3eae5355021ac7a7de3b33d38 https://www.encodeproject.org/files/ENCFF351DTM/@@download/ENCFF351DTM.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF261YXS bigBed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF221MFZ 1744782 ENCODE Processing Pipeline 4c2218b5e6a83138cc209693f39d8543 https://www.encodeproject.org/files/ENCFF261YXS/@@download/ENCFF261YXS.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF060KIQ bigBed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF562XQG 1761218 ENCODE Processing Pipeline f178488bec42281ecf1ccb27ec53b8f1 https://www.encodeproject.org/files/ENCFF060KIQ/@@download/ENCFF060KIQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF562XQG bed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF351DTM, ENCFF667WJC 530802 ENCODE Processing Pipeline 4e676800dce439b9ce05e1de3f97b56a https://www.encodeproject.org/files/ENCFF562XQG/@@download/ENCFF562XQG.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF344IWG bed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF351DTM, ENCFF667WJC, ENCFF899GSP 558246 ENCODE Processing Pipeline 5bcdeea72bf93dd1f3c246c7a6fe0d37 https://www.encodeproject.org/files/ENCFF344IWG/@@download/ENCFF344IWG.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF221MFZ bed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF667WJC, ENCFF899GSP 523312 ENCODE Processing Pipeline a20d0ffd7bb6a084b90372a56efd230a https://www.encodeproject.org/files/ENCFF221MFZ/@@download/ENCFF221MFZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF884RKT bigBed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF344IWG 1819383 ENCODE Processing Pipeline a3d680cf05d107bae81776a10a189bc0 https://www.encodeproject.org/files/ENCFF884RKT/@@download/ENCFF884RKT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF243QXN bigWig signal p-value ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF667WJC, ENCFF899GSP 582074705 ENCODE Processing Pipeline caed90813de9186d006f3f2a3c43a825 https://www.encodeproject.org/files/ENCFF243QXN/@@download/ENCFF243QXN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF298EDB bigWig signal p-value ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF351DTM, ENCFF667WJC 687672322 ENCODE Processing Pipeline 6cd9dea608918879d69d0d3cb4a0fce6 https://www.encodeproject.org/files/ENCFF298EDB/@@download/ENCFF298EDB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF825IYG bigWig signal p-value ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF351DTM, ENCFF667WJC, ENCFF899GSP 776225949 ENCODE Processing Pipeline 9efe12eee91a57400f7a6de8608adaca https://www.encodeproject.org/files/ENCFF825IYG/@@download/ENCFF825IYG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF152TWA bigWig fold change over control ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF351DTM, ENCFF667WJC 642327080 ENCODE Processing Pipeline 178b9c5bdae1197ca81dc27a12f4969e https://www.encodeproject.org/files/ENCFF152TWA/@@download/ENCFF152TWA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF633QYM bigWig fold change over control ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF667WJC, ENCFF899GSP 675551503 ENCODE Processing Pipeline 1f51f7db35663d73f7f0536d8570c268 https://www.encodeproject.org/files/ENCFF633QYM/@@download/ENCFF633QYM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF871MCR bed narrowPeak replicated peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF221MFZ, ENCFF344IWG, ENCFF562XQG 655572 ENCODE Processing Pipeline 469001aaf27450bb500ee4a90de054cb https://www.encodeproject.org/files/ENCFF871MCR/@@download/ENCFF871MCR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF229HQB bigWig fold change over control ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF351DTM, ENCFF667WJC, ENCFF899GSP 998642855 ENCODE Processing Pipeline eee63efaf923612918eeb172c7da06e3 https://www.encodeproject.org/files/ENCFF229HQB/@@download/ENCFF229HQB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF829QBB bigBed narrowPeak replicated peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF871MCR 1602364 ENCODE Processing Pipeline e74a369a1000c697b4fd5338a4ac0beb https://www.encodeproject.org/files/ENCFF829QBB/@@download/ENCFF829QBB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF757STN bam unfiltered alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF220WCE 2328761161 ENCODE Processing Pipeline b1adfbe193c4ae4715953749c7a68c4e https://www.encodeproject.org/files/ENCFF757STN/@@download/ENCFF757STN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF350ZRX bam unfiltered alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF194BWG 2307357303 ENCODE Processing Pipeline 6284c95c8cc764a19a5e38373129593a https://www.encodeproject.org/files/ENCFF350ZRX/@@download/ENCFF350ZRX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF536ZMQ bam alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF194BWG 1557388662 ENCODE Processing Pipeline 27b8a9a789b0d142c55cfd45895b712c https://www.encodeproject.org/files/ENCFF536ZMQ/@@download/ENCFF536ZMQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF148HFT bam alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF220WCE 1604014525 ENCODE Processing Pipeline 8bda449a7ab465f8de64e63beef5a087 https://www.encodeproject.org/files/ENCFF148HFT/@@download/ENCFF148HFT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF490HVR bed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF536ZMQ 540381 ENCODE Processing Pipeline 7bf17ce4373ab9aa0c0fa46ec2b02cbf https://www.encodeproject.org/files/ENCFF490HVR/@@download/ENCFF490HVR.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF701BEO bed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF148HFT, ENCFF514GVM 532595 ENCODE Processing Pipeline 8a93c8622c3b3cc6ee6b56cb0941ddad https://www.encodeproject.org/files/ENCFF701BEO/@@download/ENCFF701BEO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF405OBX bed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF148HFT, ENCFF514GVM, ENCFF536ZMQ 587209 ENCODE Processing Pipeline 538af58121944c592ea1c1a309857dd9 https://www.encodeproject.org/files/ENCFF405OBX/@@download/ENCFF405OBX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF484XPE bigBed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF490HVR 1782749 ENCODE Processing Pipeline 0aa3143194a1ac5c8bb4315b4e318073 https://www.encodeproject.org/files/ENCFF484XPE/@@download/ENCFF484XPE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF665GRP bigBed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF701BEO 1767271 ENCODE Processing Pipeline f9c67ec72706573118a3356ae1d4ad9c https://www.encodeproject.org/files/ENCFF665GRP/@@download/ENCFF665GRP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF273TFW bigBed narrowPeak peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF405OBX 1882242 ENCODE Processing Pipeline ca7c197b28367a34ec8a0b7e7c5f037e https://www.encodeproject.org/files/ENCFF273TFW/@@download/ENCFF273TFW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF066MFJ bigWig signal p-value ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF148HFT, ENCFF514GVM 839300562 ENCODE Processing Pipeline 4cb5310bde49070ebe5d4323dfd95e42 https://www.encodeproject.org/files/ENCFF066MFJ/@@download/ENCFF066MFJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF719QHB bigWig signal p-value ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF536ZMQ 717986097 ENCODE Processing Pipeline dbc5de95c7e453184b2e75a0d06a6342 https://www.encodeproject.org/files/ENCFF719QHB/@@download/ENCFF719QHB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF527HZL bigWig signal p-value ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF148HFT, ENCFF514GVM, ENCFF536ZMQ 1034848514 ENCODE Processing Pipeline 4dbb485d04356f823ddf3a1d533bff4f https://www.encodeproject.org/files/ENCFF527HZL/@@download/ENCFF527HZL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF474ENA bigWig fold change over control ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF148HFT, ENCFF514GVM 786044958 ENCODE Processing Pipeline e4be0b0022cb20395dff64173c5aae74 https://www.encodeproject.org/files/ENCFF474ENA/@@download/ENCFF474ENA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF997EKJ bigWig fold change over control ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF536ZMQ 758304081 ENCODE Processing Pipeline 5cf7611c7d9af5316128140153f5c5ec https://www.encodeproject.org/files/ENCFF997EKJ/@@download/ENCFF997EKJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF205JZO bigWig fold change over control ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF148HFT, ENCFF514GVM, ENCFF536ZMQ 1099682361 ENCODE Processing Pipeline 5e51d07dd8552899dada2a393a7d2069 https://www.encodeproject.org/files/ENCFF205JZO/@@download/ENCFF205JZO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF771CVP bed narrowPeak replicated peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF405OBX, ENCFF490HVR, ENCFF701BEO 661545 ENCODE Processing Pipeline b3681856650cfdc9ba0e031473b10a53 https://www.encodeproject.org/files/ENCFF771CVP/@@download/ENCFF771CVP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF801CKA bigBed narrowPeak replicated peaks ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF771CVP 1611133 ENCODE Processing Pipeline 27ac9fca51f71b23bb3162270faa8e28 https://www.encodeproject.org/files/ENCFF801CKA/@@download/ENCFF801CKA.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001ZSG fastq reads ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 1 36 single-ended 1774766034 Bing Ren, UCSD a6fde49ea7957300265b0f43a2e80dd1 SRA:SRR5111711 https://www.encodeproject.org/files/ENCFF001ZSG/@@download/ENCFF001ZSG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUJ/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF001ZSH fastq reads ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 1 36 single-ended 1526402344 Bing Ren, UCSD c1e336f90fe45d4230d2869f84de9914 SRA:SRR5111712 https://www.encodeproject.org/files/ENCFF001ZSH/@@download/ENCFF001ZSH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUI/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF935ENT bam alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF001ZSG, ENCFF806TVZ 1096378163 ENCODE Processing Pipeline 878d7d65c14ba765597b4e9dbf882055 https://www.encodeproject.org/files/ENCFF935ENT/@@download/ENCFF935ENT.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF247OZW bam alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF001ZSH, ENCFF806TVZ 961974679 ENCODE Processing Pipeline 064785bcd3e196ef8d1e384521b551bd https://www.encodeproject.org/files/ENCFF247OZW/@@download/ENCFF247OZW.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF619OQI bed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF247OZW, ENCFF265KAG, ENCFF851KTA, ENCFF935ENT 116647 ENCODE Processing Pipeline 2104234103abc6c908b8bb7c975ed57f https://www.encodeproject.org/files/ENCFF619OQI/@@download/ENCFF619OQI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF191PEO bigBed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF619OQI 297773 ENCODE Processing Pipeline a77c567257b5d805086083b3e7518871 https://www.encodeproject.org/files/ENCFF191PEO/@@download/ENCFF191PEO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF982NZL bed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF265KAG, ENCFF851KTA, ENCFF935ENT 277434 ENCODE Processing Pipeline f3742ae12de64c15b467e2fbb50a8271 https://www.encodeproject.org/files/ENCFF982NZL/@@download/ENCFF982NZL.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF552JZB bigBed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF265VAP 341090 ENCODE Processing Pipeline c6746e79607a1e5bb143d405e42028d7 https://www.encodeproject.org/files/ENCFF552JZB/@@download/ENCFF552JZB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF265VAP bed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF247OZW, ENCFF265KAG, ENCFF851KTA 171635 ENCODE Processing Pipeline 7ecda5262579e65534482d61f43c4b18 https://www.encodeproject.org/files/ENCFF265VAP/@@download/ENCFF265VAP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF959KQP bigBed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF982NZL 618973 ENCODE Processing Pipeline b2fd496e0d45e9e4a78ac1302b17c8ec https://www.encodeproject.org/files/ENCFF959KQP/@@download/ENCFF959KQP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF795UNS bigWig signal p-value ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF265KAG, ENCFF851KTA, ENCFF935ENT 421141672 ENCODE Processing Pipeline 9052352a4cd008753cd8f2f2c6cae14d https://www.encodeproject.org/files/ENCFF795UNS/@@download/ENCFF795UNS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF612TEW bigWig signal p-value ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF247OZW, ENCFF265KAG, ENCFF851KTA, ENCFF935ENT 417475171 ENCODE Processing Pipeline 070d128aafdeab42630e2f8f7bd59b45 https://www.encodeproject.org/files/ENCFF612TEW/@@download/ENCFF612TEW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF909HDC bigWig signal p-value ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF247OZW, ENCFF265KAG, ENCFF851KTA 391463188 ENCODE Processing Pipeline b52783b28a60ebc399c42f0cc59340e0 https://www.encodeproject.org/files/ENCFF909HDC/@@download/ENCFF909HDC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF165DQN bigWig fold change over control ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF265KAG, ENCFF851KTA, ENCFF935ENT 425733117 ENCODE Processing Pipeline 1798a98247bffd49c166ccb77437bc1e https://www.encodeproject.org/files/ENCFF165DQN/@@download/ENCFF165DQN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF980EYD bigWig fold change over control ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF247OZW, ENCFF265KAG, ENCFF851KTA 387829713 ENCODE Processing Pipeline 7fc69df4fcdb184a1969e3acfa45d550 https://www.encodeproject.org/files/ENCFF980EYD/@@download/ENCFF980EYD.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF730URQ bigBed narrowPeak replicated peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF809WCV 217759 ENCODE Processing Pipeline 30c962668e60190d010e04daf5ccf0e2 https://www.encodeproject.org/files/ENCFF730URQ/@@download/ENCFF730URQ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF273OWX bigWig fold change over control ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF247OZW, ENCFF265KAG, ENCFF851KTA, ENCFF935ENT 676776882 ENCODE Processing Pipeline 1a74b6e648ce171ad0d9275d0fc3cbe7 https://www.encodeproject.org/files/ENCFF273OWX/@@download/ENCFF273OWX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF809WCV bed narrowPeak replicated peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF265VAP, ENCFF619OQI, ENCFF982NZL 61203 ENCODE Processing Pipeline fb576b3b81f141b9028fc5ba65eff88d https://www.encodeproject.org/files/ENCFF809WCV/@@download/ENCFF809WCV.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF888GKB fastq reads ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 2 50 single-ended 384331650 Bing Ren, UCSD 50d5c5ec61be9fe8c58e82b1a9fa8215 SRA:SRR5111713 https://www.encodeproject.org/files/ENCFF888GKB/@@download/ENCFF888GKB.fastq.gz Illumina HiSeq 4000 /files/ENCFF001ZUI/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF024AOS bam unfiltered alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 36 ENCFF001ZSG, ENCFF018NEO 2270190330 ENCODE Processing Pipeline f535e40ebf66afc54777c7a9ec139cce https://www.encodeproject.org/files/ENCFF024AOS/@@download/ENCFF024AOS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF884OPZ bam unfiltered alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 36 ENCFF001ZSH, ENCFF018NEO, ENCFF888GKB 2415504323 ENCODE Processing Pipeline a22f0e2d1416f3c1f49e91940b028b1d https://www.encodeproject.org/files/ENCFF884OPZ/@@download/ENCFF884OPZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF092FTW bam alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 36 ENCFF001ZSH, ENCFF018NEO, ENCFF888GKB 1166990505 ENCODE Processing Pipeline 71c59c8d281a889fbd0c8a0621ebc0e2 https://www.encodeproject.org/files/ENCFF092FTW/@@download/ENCFF092FTW.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF432OEF bam alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 36 ENCFF001ZSG, ENCFF018NEO 1095723834 ENCODE Processing Pipeline e63c34de8ac0ff9408000fc6547212f1 https://www.encodeproject.org/files/ENCFF432OEF/@@download/ENCFF432OEF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF247JWR bed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF377IXU, ENCFF432OEF, ENCFF512NUW 298013 ENCODE Processing Pipeline 38c6a70cf675d7e82754648d217fc470 https://www.encodeproject.org/files/ENCFF247JWR/@@download/ENCFF247JWR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF060CYT bed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF092FTW, ENCFF512NUW 39923 ENCODE Processing Pipeline dd1f99d772e8bf57b0337950797d8fff https://www.encodeproject.org/files/ENCFF060CYT/@@download/ENCFF060CYT.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF090DSD bed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF092FTW, ENCFF377IXU, ENCFF432OEF, ENCFF512NUW 99039 ENCODE Processing Pipeline 42e559571d43fa957c7d7cdfe5dc382d https://www.encodeproject.org/files/ENCFF090DSD/@@download/ENCFF090DSD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF702XEW bigBed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF247JWR 652535 ENCODE Processing Pipeline 7147b6736dc3b3ddd7ea406cc1f0ce6a https://www.encodeproject.org/files/ENCFF702XEW/@@download/ENCFF702XEW.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF646CQX bigBed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF060CYT 149763 ENCODE Processing Pipeline 1ecf7d3bc73e1cc5f8b90b924d3092f3 https://www.encodeproject.org/files/ENCFF646CQX/@@download/ENCFF646CQX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF287UOK bigBed narrowPeak peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF090DSD 261897 ENCODE Processing Pipeline 6bbc83cc952acedff2330b5b6ff25ecf https://www.encodeproject.org/files/ENCFF287UOK/@@download/ENCFF287UOK.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF665YID bigWig signal p-value ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF377IXU, ENCFF432OEF, ENCFF512NUW 426690804 ENCODE Processing Pipeline 8d96ccb0292dec0332fb6ac94cff9d0c https://www.encodeproject.org/files/ENCFF665YID/@@download/ENCFF665YID.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF148WAJ bigWig signal p-value ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF092FTW, ENCFF512NUW 232443306 ENCODE Processing Pipeline e6a76890f015f96d48202482ff255947 https://www.encodeproject.org/files/ENCFF148WAJ/@@download/ENCFF148WAJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF886JNH bigWig signal p-value ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF092FTW, ENCFF377IXU, ENCFF432OEF, ENCFF512NUW 413491949 ENCODE Processing Pipeline 7960d712fe1688a6e1437b5e946e8e00 https://www.encodeproject.org/files/ENCFF886JNH/@@download/ENCFF886JNH.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF612SJE bigWig fold change over control ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 ENCFF377IXU, ENCFF432OEF, ENCFF512NUW 436015675 ENCODE Processing Pipeline 7af29b023e34f9e2b764c113621dbc15 https://www.encodeproject.org/files/ENCFF612SJE/@@download/ENCFF612SJE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF377FQT bigWig fold change over control ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 ENCFF092FTW, ENCFF512NUW 396673496 ENCODE Processing Pipeline 40fa0a60a873daf10cab32355c784d31 https://www.encodeproject.org/files/ENCFF377FQT/@@download/ENCFF377FQT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF505IIX bigWig fold change over control ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF092FTW, ENCFF377IXU, ENCFF432OEF, ENCFF512NUW 737968530 ENCODE Processing Pipeline bc28aa302259c08a02a6697f539d3f4a https://www.encodeproject.org/files/ENCFF505IIX/@@download/ENCFF505IIX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF454HBY bed narrowPeak replicated peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF060CYT, ENCFF090DSD, ENCFF247JWR 48716 ENCODE Processing Pipeline 4a4ffc1dc2fa2eaa36c231a5855ed264 https://www.encodeproject.org/files/ENCFF454HBY/@@download/ENCFF454HBY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF111UCS bigBed narrowPeak replicated peaks ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1, 2 ENCFF454HBY 188329 ENCODE Processing Pipeline 0e47b5ff227d94e1c97bb11476bbbfb2 https://www.encodeproject.org/files/ENCFF111UCS/@@download/ENCFF111UCS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF001MMQ bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MMU 1806319410 Ross Hardison, PennState faebb817130e576844cedcbb1fdb9a49 https://www.encodeproject.org/files/ENCFF001MMQ/@@download/ENCFF001MMQ.bam mm9 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF001MMS bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MMW 1538814362 Ross Hardison, PennState 4e84f274271f3bd548890106b711431d https://www.encodeproject.org/files/ENCFF001MMS/@@download/ENCFF001MMS.bam mm9 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF001MMT bigWig signal ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 2859178689 Ross Hardison, PennState 05ae0dcd489fec1ece7ea27d7db66bd6 https://www.encodeproject.org/files/ENCFF001MMT/@@download/ENCFF001MMT.bigWig mm9 released low read length, inconsistent platforms, mixed read lengths missing derived_from, insufficient read depth for broad peaks control ENCFF001MMU fastq reads ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 41 single-ended 1426416172 Ross Hardison, PennState 4e4885d2a4513db75d25557045e70255 https://www.encodeproject.org/files/ENCFF001MMU/@@download/ENCFF001MMU.fastq.gz Illumina Genome Analyzer IIx released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF001MMV bigWig signal ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 2674892014 Ross Hardison, PennState f7455a125f32ed94a555168758881eff https://www.encodeproject.org/files/ENCFF001MMV/@@download/ENCFF001MMV.bigWig mm9 released low read length, inconsistent platforms, mixed read lengths missing derived_from, insufficient read depth for broad peaks control ENCFF001MMW fastq reads ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 48 single-ended 1249833015 Ross Hardison, PennState 9c3eb16d28b9f531b1de4826ff934048 https://www.encodeproject.org/files/ENCFF001MMW/@@download/ENCFF001MMW.fastq.gz Illumina HiSeq 2000 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF001MMX bigWig signal ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 4359087761 Ross Hardison, PennState 0a2245f686dac1de5f325953d7a6383c https://www.encodeproject.org/files/ENCFF001MMX/@@download/ENCFF001MMX.bigWig mm9 released low read length, inconsistent platforms, mixed read lengths missing derived_from, insufficient read depth for broad peaks control ENCFF910AGQ bam unfiltered alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MMU, ENCFF806TVZ 1911850699 J. Michael Cherry, Stanford 0808769e422a3b0eb2a4afee841e1b84 https://www.encodeproject.org/files/ENCFF910AGQ/@@download/ENCFF910AGQ.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF238LRI bam unfiltered alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MMW, ENCFF806TVZ 1622311603 J. Michael Cherry, Stanford 5091ebe2d7916e4aa20c033d795bba36 https://www.encodeproject.org/files/ENCFF238LRI/@@download/ENCFF238LRI.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF876HOP bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MMW, ENCFF806TVZ 1232355626 ENCODE Processing Pipeline 5dc84778a850f5abb7844894f58662a5 https://www.encodeproject.org/files/ENCFF876HOP/@@download/ENCFF876HOP.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF685MRG bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MMU, ENCFF806TVZ 1388412215 ENCODE Processing Pipeline 7db3a087252e353a5da763fec19e9a4a https://www.encodeproject.org/files/ENCFF685MRG/@@download/ENCFF685MRG.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF887UBK bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MMU, ENCFF018NEO 1388027027 ENCODE Processing Pipeline a5bb454b5781e9d3459dbd88598e6674 https://www.encodeproject.org/files/ENCFF887UBK/@@download/ENCFF887UBK.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF380YCA bam unfiltered alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MMU, ENCFF018NEO 1913525540 ENCODE Processing Pipeline 88dcf2eceb855bc51d6f25fd121bb415 https://www.encodeproject.org/files/ENCFF380YCA/@@download/ENCFF380YCA.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF244TFU bam unfiltered alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MMW, ENCFF018NEO 1491188157 ENCODE Processing Pipeline 942fb1ab7d94c024710696ea02b426c7 https://www.encodeproject.org/files/ENCFF244TFU/@@download/ENCFF244TFU.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF381DCK bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MMW, ENCFF018NEO 1108781777 ENCODE Processing Pipeline 2f4460f04253419084c1b1bed196f989 https://www.encodeproject.org/files/ENCFF381DCK/@@download/ENCFF381DCK.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF441PKE fastq reads ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2149544223 Bing Ren, UCSD cc1e35e1e91d5ad6a60b535cee48e206 SRA:SRR3651581 https://www.encodeproject.org/files/ENCFF441PKE/@@download/ENCFF441PKE.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF961WKK fastq reads ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1831489114 Bing Ren, UCSD 9261de2ab2b0f36105d6985147c3261a SRA:SRR3651582 https://www.encodeproject.org/files/ENCFF961WKK/@@download/ENCFF961WKK.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF517ODV fastq reads ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 407716419 Bing Ren, UCSD 8785f8e4d1f46757d71a627ee7428942 SRA:SRR3651583 https://www.encodeproject.org/files/ENCFF517ODV/@@download/ENCFF517ODV.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF028OLU bam alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF517ODV, ENCFF806TVZ, ENCFF961WKK 2263331670 ENCODE Processing Pipeline 02e0a55590df51a26366f2134bfa1d6e https://www.encodeproject.org/files/ENCFF028OLU/@@download/ENCFF028OLU.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF059DKF bam alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF441PKE, ENCFF806TVZ 2144162314 ENCODE Processing Pipeline 6a4a172e8951d3f9a8bc4c4e35c674b7 https://www.encodeproject.org/files/ENCFF059DKF/@@download/ENCFF059DKF.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF904YNS bam unfiltered alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF441PKE 2976251043 ENCODE Processing Pipeline ca087d78183d51a10e933b77e2d1593c https://www.encodeproject.org/files/ENCFF904YNS/@@download/ENCFF904YNS.bam mm10 released sequencing runs labeled as technical replicates ENCFF174CBX bam unfiltered alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF517ODV, ENCFF961WKK 3107240186 ENCODE Processing Pipeline 9e49aa7604de8b27829c9abe835c94cf https://www.encodeproject.org/files/ENCFF174CBX/@@download/ENCFF174CBX.bam mm10 released sequencing runs labeled as technical replicates ENCFF387WDC bam alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF441PKE 2143696858 ENCODE Processing Pipeline 749e68951a0af7b99ca34b234de4e406 https://www.encodeproject.org/files/ENCFF387WDC/@@download/ENCFF387WDC.bam mm10 released sequencing runs labeled as technical replicates ENCFF570IJH bam alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF517ODV, ENCFF961WKK 2262820796 ENCODE Processing Pipeline 829e9c5b6131861bfbfed56720f72ff9 https://www.encodeproject.org/files/ENCFF570IJH/@@download/ENCFF570IJH.bam mm10 released sequencing runs labeled as technical replicates ENCFF002AIC fastq reads ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1842091150 Bing Ren, UCSD d2474c656110d560855d879c67b7ded3 SRA:SRR3652746 https://www.encodeproject.org/files/ENCFF002AIC/@@download/ENCFF002AIC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQD/ released low read depth insufficient read depth, control insufficient read depth ENCFF002AID fastq reads ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2479691786 Bing Ren, UCSD 027f29efb8087dbdb895396a0b783a82 SRA:SRR3652745 https://www.encodeproject.org/files/ENCFF002AID/@@download/ENCFF002AID.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQH/ released low read depth insufficient read depth, control insufficient read depth ENCFF681JCH bam alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIC, ENCFF806TVZ 1453401748 ENCODE Processing Pipeline 3b79b5b0f7520de59af75be3441b822b https://www.encodeproject.org/files/ENCFF681JCH/@@download/ENCFF681JCH.bam mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF842KKY bam alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AID, ENCFF806TVZ 1854398545 ENCODE Processing Pipeline 071a86fb25589b8dfed3384ad0c08320 https://www.encodeproject.org/files/ENCFF842KKY/@@download/ENCFF842KKY.bam mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF638OBA bed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF681JCH, ENCFF999ZTB 1576222 ENCODE Processing Pipeline 1e4a8c10a362dfa89bba25421df58017 https://www.encodeproject.org/files/ENCFF638OBA/@@download/ENCFF638OBA.bed.gz mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF852EBF bed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF842KKY, ENCFF999ZTB 1491180 ENCODE Processing Pipeline b948636a3fc240948dd779ba737036f3 https://www.encodeproject.org/files/ENCFF852EBF/@@download/ENCFF852EBF.bed.gz mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF526FCQ bigBed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF216FAZ 3011499 ENCODE Processing Pipeline d7d97c53edd17027ce83c019fd20392c https://www.encodeproject.org/files/ENCFF526FCQ/@@download/ENCFF526FCQ.bigBed mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF216FAZ bed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF681JCH, ENCFF842KKY, ENCFF999ZTB 1389910 ENCODE Processing Pipeline a39048cc17ba2f868cac1da7f5479087 https://www.encodeproject.org/files/ENCFF216FAZ/@@download/ENCFF216FAZ.bed.gz mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF716PPM bigBed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF852EBF 3273410 ENCODE Processing Pipeline 56ff8c3fe0f3194cf805dd938e2039ae https://www.encodeproject.org/files/ENCFF716PPM/@@download/ENCFF716PPM.bigBed mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF218HFK bigBed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF638OBA 3514411 ENCODE Processing Pipeline b3885889401a8806d78eca7332358440 https://www.encodeproject.org/files/ENCFF218HFK/@@download/ENCFF218HFK.bigBed mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF594GSB bigWig signal p-value ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF681JCH, ENCFF999ZTB 373771222 ENCODE Processing Pipeline 55fa859853e49dd39322ce33c1924ba9 https://www.encodeproject.org/files/ENCFF594GSB/@@download/ENCFF594GSB.bigWig mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF948CDJ bigWig signal p-value ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF842KKY, ENCFF999ZTB 407208053 ENCODE Processing Pipeline b6ff0208551347179556f0fcb64d14fb https://www.encodeproject.org/files/ENCFF948CDJ/@@download/ENCFF948CDJ.bigWig mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF509SPP bigWig signal p-value ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF681JCH, ENCFF842KKY, ENCFF999ZTB 419362647 ENCODE Processing Pipeline 3616d20bcbe72bc1885df66d17c63bfa https://www.encodeproject.org/files/ENCFF509SPP/@@download/ENCFF509SPP.bigWig mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF177VCO bigWig fold change over control ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF681JCH, ENCFF999ZTB 410909478 ENCODE Processing Pipeline b8fec43cefbf976b0aefa320fd87606f https://www.encodeproject.org/files/ENCFF177VCO/@@download/ENCFF177VCO.bigWig mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF397YJW bigWig fold change over control ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF842KKY, ENCFF999ZTB 549967055 ENCODE Processing Pipeline 9541ac10bfd5ffe1b302d9c9916cacdb https://www.encodeproject.org/files/ENCFF397YJW/@@download/ENCFF397YJW.bigWig mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF793FAU bigWig fold change over control ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF681JCH, ENCFF842KKY, ENCFF999ZTB 832025967 ENCODE Processing Pipeline 7ff48975a52e80fc435f5e124162fea7 https://www.encodeproject.org/files/ENCFF793FAU/@@download/ENCFF793FAU.bigWig mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF357ZXS bigBed narrowPeak replicated peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF097IIC 2549269 ENCODE Processing Pipeline d9412cf599db62e2d69af5b50eb885ab https://www.encodeproject.org/files/ENCFF357ZXS/@@download/ENCFF357ZXS.bigBed mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF097IIC bed narrowPeak replicated peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF216FAZ, ENCFF638OBA, ENCFF852EBF 1377248 ENCODE Processing Pipeline 6bbb0e8e534012401232f1391c46f196 https://www.encodeproject.org/files/ENCFF097IIC/@@download/ENCFF097IIC.bed.gz mm10-minimal archived low read depth insufficient read depth, control insufficient read depth ENCFF369OXW bam unfiltered alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIC, ENCFF018NEO 2065023867 ENCODE Processing Pipeline 4bed2532dee3f0747a09a4c1fd0b1e58 https://www.encodeproject.org/files/ENCFF369OXW/@@download/ENCFF369OXW.bam mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF596FAF bam unfiltered alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AID, ENCFF018NEO 2645848740 ENCODE Processing Pipeline 1106c0a1fc886de0655b93130af178b8 https://www.encodeproject.org/files/ENCFF596FAF/@@download/ENCFF596FAF.bam mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF375RZM bam alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIC, ENCFF018NEO 1453086353 ENCODE Processing Pipeline 3ce68309d5dd86a31a92fda857ad7111 https://www.encodeproject.org/files/ENCFF375RZM/@@download/ENCFF375RZM.bam mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF144DAE bam alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AID, ENCFF018NEO 1854006804 ENCODE Processing Pipeline 23500f9975c8ab145a1ada5d239fca30 https://www.encodeproject.org/files/ENCFF144DAE/@@download/ENCFF144DAE.bam mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF012CDM bed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF375RZM, ENCFF399OUP, ENCFF863NZX 1576978 ENCODE Processing Pipeline 912cfda33065b053e06c97c06e3e2aba https://www.encodeproject.org/files/ENCFF012CDM/@@download/ENCFF012CDM.bed.gz mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF201UZI bed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF144DAE, ENCFF863NZX 909156 ENCODE Processing Pipeline ef0f78ecd4e6c8e42ffb72cb5bb3b4b3 https://www.encodeproject.org/files/ENCFF201UZI/@@download/ENCFF201UZI.bed.gz mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF051CKC bed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144DAE, ENCFF375RZM, ENCFF399OUP, ENCFF863NZX 1377048 ENCODE Processing Pipeline f298b2d26f337a32a2a545379d4f6ce2 https://www.encodeproject.org/files/ENCFF051CKC/@@download/ENCFF051CKC.bed.gz mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF096OFW bigBed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF201UZI 2102486 ENCODE Processing Pipeline 0ee6808a9a19bd7c9e3d489f18ec70d0 https://www.encodeproject.org/files/ENCFF096OFW/@@download/ENCFF096OFW.bigBed mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF614UCU bigBed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF051CKC 2952170 ENCODE Processing Pipeline 5233f78d33bc116bf312b9cecabe7896 https://www.encodeproject.org/files/ENCFF614UCU/@@download/ENCFF614UCU.bigBed mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF878YUD bigBed narrowPeak peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF012CDM 3514571 ENCODE Processing Pipeline 925bbcb14da2711c67cb575ccd4da46c https://www.encodeproject.org/files/ENCFF878YUD/@@download/ENCFF878YUD.bigBed mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF310DOR bigWig signal p-value ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF375RZM, ENCFF399OUP, ENCFF863NZX 373864889 ENCODE Processing Pipeline 49222da69e44224baa95db350bb97843 https://www.encodeproject.org/files/ENCFF310DOR/@@download/ENCFF310DOR.bigWig mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF296VDG bigWig signal p-value ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF144DAE, ENCFF863NZX 195413750 ENCODE Processing Pipeline a4ef28a925843f731e863553e0ed986b https://www.encodeproject.org/files/ENCFF296VDG/@@download/ENCFF296VDG.bigWig mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF632VFQ bigWig signal p-value ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144DAE, ENCFF375RZM, ENCFF399OUP, ENCFF863NZX 374146715 ENCODE Processing Pipeline 0a1fea1bfb8b08989c3e2d78bbe10fc7 https://www.encodeproject.org/files/ENCFF632VFQ/@@download/ENCFF632VFQ.bigWig mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF913OSE bigWig fold change over control ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF375RZM, ENCFF399OUP, ENCFF863NZX 410362719 ENCODE Processing Pipeline 9bfa3228866ddc41292ab4a8bfde709f https://www.encodeproject.org/files/ENCFF913OSE/@@download/ENCFF913OSE.bigWig mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF548WOO bigWig fold change over control ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF144DAE, ENCFF863NZX 457840321 ENCODE Processing Pipeline 1118b3c757341de20167e62c129e14c9 https://www.encodeproject.org/files/ENCFF548WOO/@@download/ENCFF548WOO.bigWig mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF426WOD bigWig fold change over control ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144DAE, ENCFF375RZM, ENCFF399OUP, ENCFF863NZX 789417235 ENCODE Processing Pipeline 12782a18a214900b915c2822ff76f641 https://www.encodeproject.org/files/ENCFF426WOD/@@download/ENCFF426WOD.bigWig mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF969PPR bigBed narrowPeak replicated peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF962XLA 2329177 ENCODE Processing Pipeline f0660c8767827aa77cc49ea6a50fe5c6 https://www.encodeproject.org/files/ENCFF969PPR/@@download/ENCFF969PPR.bigBed mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF962XLA bed narrowPeak replicated peaks ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF012CDM, ENCFF051CKC, ENCFF201UZI 1255955 ENCODE Processing Pipeline 09380d0371af1ba53b34a1c65fa98c16 https://www.encodeproject.org/files/ENCFF962XLA/@@download/ENCFF962XLA.bed.gz mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF955GVE fastq reads ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 1 50 single-ended 1791286259 Bing Ren, UCSD 0c31803f1463db0affb8f844e112fceb SRA:SRR3652998 https://www.encodeproject.org/files/ENCFF955GVE/@@download/ENCFF955GVE.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released mild to moderate bottlenecking ENCFF114FLE fastq reads ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 1 50 single-ended 2633635349 Bing Ren, UCSD f11eaac749813108dc3b1d7017582489 SRA:SRR3652999 https://www.encodeproject.org/files/ENCFF114FLE/@@download/ENCFF114FLE.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released mild to moderate bottlenecking ENCFF288HVU bam unfiltered alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 50 ENCFF018NEO, ENCFF955GVE 2443162943 ENCODE Processing Pipeline 3b30034c5a6ffa28b434d81c29a186d1 https://www.encodeproject.org/files/ENCFF288HVU/@@download/ENCFF288HVU.bam mm10 released mild to moderate bottlenecking ENCFF987GZJ bam unfiltered alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 50 ENCFF018NEO, ENCFF114FLE 3522226168 ENCODE Processing Pipeline bb0b049ce4d91e4b9b0e000fdb84e190 https://www.encodeproject.org/files/ENCFF987GZJ/@@download/ENCFF987GZJ.bam mm10 released mild to moderate bottlenecking ENCFF026EIK bam alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 50 ENCFF018NEO, ENCFF955GVE 1258665998 ENCODE Processing Pipeline acf1531203a36a799ece58aecca55abd https://www.encodeproject.org/files/ENCFF026EIK/@@download/ENCFF026EIK.bam mm10 released mild to moderate bottlenecking ENCFF271FFU bam alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 50 ENCFF018NEO, ENCFF114FLE 1806591037 ENCODE Processing Pipeline 8b72cbcd0c74b5a870d09c6ccaa2150d https://www.encodeproject.org/files/ENCFF271FFU/@@download/ENCFF271FFU.bam mm10 released mild to moderate bottlenecking ENCFF190IGM bam unfiltered alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 50 ENCFF806TVZ, ENCFF955GVE 2438208852 ENCODE Processing Pipeline 81d757f0ba06d133dcab363c0e753738 https://www.encodeproject.org/files/ENCFF190IGM/@@download/ENCFF190IGM.bam mm10-minimal archived mild to moderate bottlenecking ENCFF290HIV bam unfiltered alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 50 ENCFF114FLE, ENCFF806TVZ 3516341801 ENCODE Processing Pipeline a0518b0eada1851e1a6fec6029f973fc https://www.encodeproject.org/files/ENCFF290HIV/@@download/ENCFF290HIV.bam mm10-minimal archived mild to moderate bottlenecking ENCFF572VFK bam alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 50 ENCFF806TVZ, ENCFF955GVE 1259281584 ENCODE Processing Pipeline fa399f72cbffc367b65b9761c45c51b3 https://www.encodeproject.org/files/ENCFF572VFK/@@download/ENCFF572VFK.bam mm10-minimal archived mild to moderate bottlenecking ENCFF806YSN bam alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 50 ENCFF114FLE, ENCFF806TVZ 1807198523 ENCODE Processing Pipeline 435bff3ba3aed0a00b89cb8a07bf643d https://www.encodeproject.org/files/ENCFF806YSN/@@download/ENCFF806YSN.bam mm10-minimal archived mild to moderate bottlenecking ENCFF955XXB bigBed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF740DYU 3301783 ENCODE Processing Pipeline 3fc972187d736ae1e54ea8cb1e7928ed https://www.encodeproject.org/files/ENCFF955XXB/@@download/ENCFF955XXB.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF939RNR bigWig signal p-value ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF233LRZ, ENCFF806YSN 734881822 ENCODE Processing Pipeline e7b29ea9809a592d4b3b4441a850c938 https://www.encodeproject.org/files/ENCFF939RNR/@@download/ENCFF939RNR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF032IPW bigWig fold change over control ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF233LRZ, ENCFF806YSN 798505288 ENCODE Processing Pipeline e8d053d07a58089c05633c22983dedaa https://www.encodeproject.org/files/ENCFF032IPW/@@download/ENCFF032IPW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF295GJM bigWig fold change over control ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF233LRZ, ENCFF572VFK, ENCFF595MDP, ENCFF806YSN 1270078390 ENCODE Processing Pipeline eb2c5d3496037aec6dc4ce80597af00d https://www.encodeproject.org/files/ENCFF295GJM/@@download/ENCFF295GJM.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF324KKO bed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF572VFK, ENCFF595MDP 945850 ENCODE Processing Pipeline c678444619dd3a75fd35921c11603443 https://www.encodeproject.org/files/ENCFF324KKO/@@download/ENCFF324KKO.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF991NXX bed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF233LRZ, ENCFF806YSN 932191 ENCODE Processing Pipeline f583714f6a024b09902276131b4a04b9 https://www.encodeproject.org/files/ENCFF991NXX/@@download/ENCFF991NXX.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF740DYU bed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF233LRZ, ENCFF572VFK, ENCFF595MDP, ENCFF806YSN 1358001 ENCODE Processing Pipeline ed242006b76f9473459f2aa2baa4ecf8 https://www.encodeproject.org/files/ENCFF740DYU/@@download/ENCFF740DYU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF866IOT bigBed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF324KKO 1953916 ENCODE Processing Pipeline 366eb4cd995581fbdcc039a6f9ac4afd https://www.encodeproject.org/files/ENCFF866IOT/@@download/ENCFF866IOT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF786CVL bigBed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF991NXX 1937808 ENCODE Processing Pipeline fc28d1c21ae457d73eab5a70da3a2934 https://www.encodeproject.org/files/ENCFF786CVL/@@download/ENCFF786CVL.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF914RLZ bigBed narrowPeak replicated peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF628ABI 1164614 ENCODE Processing Pipeline 2d2ace000976e3fccd4b80c807521c3d https://www.encodeproject.org/files/ENCFF914RLZ/@@download/ENCFF914RLZ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF419IBF bigWig signal p-value ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF572VFK, ENCFF595MDP 486511007 ENCODE Processing Pipeline 8a40db5dbdae60f566bd699e0cdcf4b2 https://www.encodeproject.org/files/ENCFF419IBF/@@download/ENCFF419IBF.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF628ABI bed narrowPeak replicated peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF324KKO, ENCFF740DYU, ENCFF991NXX 491728 ENCODE Processing Pipeline 4f81eb9b0cc7f1f89e7944da3554d58e https://www.encodeproject.org/files/ENCFF628ABI/@@download/ENCFF628ABI.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF414NPV bigWig signal p-value ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF233LRZ, ENCFF572VFK, ENCFF595MDP, ENCFF806YSN 1144021702 ENCODE Processing Pipeline 0861f99d51f27dbd4d95894da25580da https://www.encodeproject.org/files/ENCFF414NPV/@@download/ENCFF414NPV.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF428LQX bigWig fold change over control ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF572VFK, ENCFF595MDP 608610466 ENCODE Processing Pipeline 0723eb410a24cb516dce50c7c4c8754e https://www.encodeproject.org/files/ENCFF428LQX/@@download/ENCFF428LQX.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF284JLW bed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF026EIK, ENCFF548IIV 962798 ENCODE Processing Pipeline 16865cf33758e8f69c300888953b0942 https://www.encodeproject.org/files/ENCFF284JLW/@@download/ENCFF284JLW.bed.gz mm10 released mild to moderate bottlenecking ENCFF504AOW bed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF271FFU, ENCFF781DUP 930530 ENCODE Processing Pipeline f300354ec8280353ff5375ee5a88696e https://www.encodeproject.org/files/ENCFF504AOW/@@download/ENCFF504AOW.bed.gz mm10 released mild to moderate bottlenecking ENCFF163ZJH bed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF026EIK, ENCFF271FFU, ENCFF548IIV, ENCFF781DUP 1135532 ENCODE Processing Pipeline 9835807e252186ed9ba9b41b410b35e9 https://www.encodeproject.org/files/ENCFF163ZJH/@@download/ENCFF163ZJH.bed.gz mm10 released mild to moderate bottlenecking ENCFF495FJD bigBed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF284JLW 1987254 ENCODE Processing Pipeline 3d9d4e6d970fc211cc98870a0f85feb1 https://www.encodeproject.org/files/ENCFF495FJD/@@download/ENCFF495FJD.bigBed mm10 released mild to moderate bottlenecking ENCFF008FBP bigBed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF504AOW 1937636 ENCODE Processing Pipeline d393c4bfeaf08b9fbec775b5ff53d77c https://www.encodeproject.org/files/ENCFF008FBP/@@download/ENCFF008FBP.bigBed mm10 released mild to moderate bottlenecking ENCFF606YSP bigWig signal p-value ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF026EIK, ENCFF548IIV 539534915 ENCODE Processing Pipeline 41c95c9633be81d65aab102a99af9c3f https://www.encodeproject.org/files/ENCFF606YSP/@@download/ENCFF606YSP.bigWig mm10 released mild to moderate bottlenecking ENCFF199KSD bigWig signal p-value ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF271FFU, ENCFF781DUP 676653139 ENCODE Processing Pipeline 43e8b5fee9c6f1c610f2c1ed99f59164 https://www.encodeproject.org/files/ENCFF199KSD/@@download/ENCFF199KSD.bigWig mm10 released mild to moderate bottlenecking ENCFF344MPH bigBed narrowPeak peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF163ZJH 2819868 ENCODE Processing Pipeline 6a1657cc85cc343016150d0c2f5425bd https://www.encodeproject.org/files/ENCFF344MPH/@@download/ENCFF344MPH.bigBed mm10 released mild to moderate bottlenecking ENCFF553JWJ bigWig signal p-value ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF026EIK, ENCFF271FFU, ENCFF548IIV, ENCFF781DUP 1145158236 ENCODE Processing Pipeline 026870635fb2230f453a910981d14c8b https://www.encodeproject.org/files/ENCFF553JWJ/@@download/ENCFF553JWJ.bigWig mm10 released mild to moderate bottlenecking ENCFF155CDV bigWig fold change over control ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 ENCFF271FFU, ENCFF781DUP 799715863 ENCODE Processing Pipeline 0411679acd8b3f9ee319e70ea75a3a9d https://www.encodeproject.org/files/ENCFF155CDV/@@download/ENCFF155CDV.bigWig mm10 released mild to moderate bottlenecking ENCFF432ADZ bigWig fold change over control ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF026EIK, ENCFF271FFU, ENCFF548IIV, ENCFF781DUP 1320573909 ENCODE Processing Pipeline cb2914f06752c7bf039bf51cb01241d6 https://www.encodeproject.org/files/ENCFF432ADZ/@@download/ENCFF432ADZ.bigWig mm10 released mild to moderate bottlenecking ENCFF985ZVN bigWig fold change over control ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 ENCFF026EIK, ENCFF548IIV 608077676 ENCODE Processing Pipeline 6221417dd9bba6b9b8d1205822aac504 https://www.encodeproject.org/files/ENCFF985ZVN/@@download/ENCFF985ZVN.bigWig mm10 released mild to moderate bottlenecking ENCFF528GDD bed narrowPeak replicated peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF163ZJH, ENCFF284JLW, ENCFF504AOW 538967 ENCODE Processing Pipeline 36abab4ae8e9dcc72b2688180bd7e16f https://www.encodeproject.org/files/ENCFF528GDD/@@download/ENCFF528GDD.bed.gz mm10 released mild to moderate bottlenecking ENCFF042GKY bigBed narrowPeak replicated peaks ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1, 2 ENCFF528GDD 1271516 ENCODE Processing Pipeline cc34e0574170eed13388e7e0abefd0ca https://www.encodeproject.org/files/ENCFF042GKY/@@download/ENCFF042GKY.bigBed mm10 released mild to moderate bottlenecking ENCFF001IGS bigBed narrowPeak peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVD 75922 Barbara Wold, Caltech 43dcbf37151a85839c390fc9f473e52f https://www.encodeproject.org/files/ENCFF001IGS/@@download/ENCFF001IGS.bigBed mm9 released insufficient read length, control insufficient read depth extremely low read depth ENCFF001IGT fastq reads ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 247106585 Barbara Wold, Caltech 3983b946d25c7fe3ea37bb53db932a30 https://www.encodeproject.org/files/ENCFF001IGT/@@download/ENCFF001IGT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read length, control insufficient read depth extremely low read depth ENCFF001IGU fastq reads ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 162862224 Barbara Wold, Caltech e4ca2324f50c9a520ab639336b9ee8d6 https://www.encodeproject.org/files/ENCFF001IGU/@@download/ENCFF001IGU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read length, control insufficient read depth extremely low read depth ENCFF001IGV bigWig signal ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGW 38145652 Barbara Wold, Caltech 24930cfa134084d0cef91b3c8edc0676 https://www.encodeproject.org/files/ENCFF001IGV/@@download/ENCFF001IGV.bigWig mm9 released insufficient read length, control insufficient read depth extremely low read depth ENCFF001IGW bam alignments ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IGT, ENCFF001IGU 453155853 Barbara Wold, Caltech 01c5990529061589f0c23d27136d2d8e https://www.encodeproject.org/files/ENCFF001IGW/@@download/ENCFF001IGW.bam mm9 released insufficient read length, control insufficient read depth extremely low read depth ENCFF001XVD bed narrowPeak peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGW 11349 Barbara Wold, Caltech e43968f4fd9727c3dc9107edeca8b35a https://www.encodeproject.org/files/ENCFF001XVD/@@download/ENCFF001XVD.bed.gz mm9 released insufficient read length, control insufficient read depth extremely low read depth ENCFF364XGA bam alignments ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGT, ENCFF001IGU, ENCFF018NEO 166271651 ENCODE Processing Pipeline 3762a962f3ac3f4724d0b3fc38c5853b https://www.encodeproject.org/files/ENCFF364XGA/@@download/ENCFF364XGA.bam mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF235FWM bam unfiltered alignments ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGT, ENCFF001IGU, ENCFF018NEO 478307923 ENCODE Processing Pipeline 40bc84d8c642fc6c06cfdf5014dda3c2 https://www.encodeproject.org/files/ENCFF235FWM/@@download/ENCFF235FWM.bam mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF520IQY bigWig signal p-value ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF364XGA 207163539 ENCODE Processing Pipeline 041aa2966b07859307ab7678ff12dd36 https://www.encodeproject.org/files/ENCFF520IQY/@@download/ENCFF520IQY.bigWig mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF538JIG bed narrowPeak peaks and background as input for IDR ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF364XGA 1493421 ENCODE Processing Pipeline afc74de8ed7ca180d4cd073254b55769 https://www.encodeproject.org/files/ENCFF538JIG/@@download/ENCFF538JIG.bed.gz mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF812OSG bigWig fold change over control ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF364XGA 84449230 ENCODE Processing Pipeline 84c669c60a8162bb96fadb857922aeeb https://www.encodeproject.org/files/ENCFF812OSG/@@download/ENCFF812OSG.bigWig mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF996KDC bigBed narrowPeak peaks and background as input for IDR ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF538JIG 3224733 ENCODE Processing Pipeline e8a283fee84d7650556f2bea0be1aea9 https://www.encodeproject.org/files/ENCFF996KDC/@@download/ENCFF996KDC.bigBed mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF980DKG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF538JIG, ENCFF547MET 1008 ENCODE Processing Pipeline 8353e00c6176888e7b441349c58f332c https://www.encodeproject.org/files/ENCFF980DKG/@@download/ENCFF980DKG.bed.gz mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF607KIK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF980DKG 30218 ENCODE Processing Pipeline d0d8c5e67fc55e66a1b951748cec2fd6 https://www.encodeproject.org/files/ENCFF607KIK/@@download/ENCFF607KIK.bigBed mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF470QWO fastq reads ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1728373390 Bing Ren, UCSD a5c930cbca524fe8fef5e5ae9e8bb7a8 SRA:SRR3652288 https://www.encodeproject.org/files/ENCFF470QWO/@@download/ENCFF470QWO.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released mild to moderate bottlenecking ENCFF232IYQ fastq reads ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1579646483 Bing Ren, UCSD 23997f50fe159855119c87f968ffcd26 SRA:SRR3652289 https://www.encodeproject.org/files/ENCFF232IYQ/@@download/ENCFF232IYQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/, /files/ENCFF788YDC/ released mild to moderate bottlenecking ENCFF300AEF bam alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF232IYQ, ENCFF806TVZ 1397087915 ENCODE Processing Pipeline 35462603f169a1e0711df926f4b41436 https://www.encodeproject.org/files/ENCFF300AEF/@@download/ENCFF300AEF.bam mm10-minimal archived mild to moderate bottlenecking ENCFF123XZJ bam alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF470QWO, ENCFF806TVZ 1532629678 ENCODE Processing Pipeline bf8ba940575fe4cd8bf946cc3b8d7b64 https://www.encodeproject.org/files/ENCFF123XZJ/@@download/ENCFF123XZJ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF155YKY bigBed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF711VRL 1724680 ENCODE Processing Pipeline 59ff10a847b967680fa0e56771daa871 https://www.encodeproject.org/files/ENCFF155YKY/@@download/ENCFF155YKY.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF690BEX bigBed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF160KSU 1878075 ENCODE Processing Pipeline 42361d2d06620b218bc68b9452e33271 https://www.encodeproject.org/files/ENCFF690BEX/@@download/ENCFF690BEX.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF842AGU bed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF123XZJ, ENCFF670KZF 544502 ENCODE Processing Pipeline 353c69d18fbf82737adc1742576a63c8 https://www.encodeproject.org/files/ENCFF842AGU/@@download/ENCFF842AGU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF711VRL bed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF300AEF, ENCFF950FXV 525718 ENCODE Processing Pipeline bfbfe421ca358fdfc3a6917d170fae13 https://www.encodeproject.org/files/ENCFF711VRL/@@download/ENCFF711VRL.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF359XON bigWig signal p-value ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF123XZJ, ENCFF670KZF 514796686 ENCODE Processing Pipeline 3b3218d38803564e6ab4dd2666261fe9 https://www.encodeproject.org/files/ENCFF359XON/@@download/ENCFF359XON.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF160KSU bed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF123XZJ, ENCFF300AEF, ENCFF670KZF, ENCFF950FXV 599064 ENCODE Processing Pipeline d640f5c34b836f5732c0893fe88ff9fa https://www.encodeproject.org/files/ENCFF160KSU/@@download/ENCFF160KSU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF818WAT bigBed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF842AGU 1779948 ENCODE Processing Pipeline 1ff15e8494b340c76f8c43386720c43f https://www.encodeproject.org/files/ENCFF818WAT/@@download/ENCFF818WAT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF511DOK bigWig signal p-value ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF300AEF, ENCFF950FXV 505502632 ENCODE Processing Pipeline af56921f25a685f021225f5a945bf881 https://www.encodeproject.org/files/ENCFF511DOK/@@download/ENCFF511DOK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF687HPG bigWig signal p-value ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF123XZJ, ENCFF300AEF, ENCFF670KZF, ENCFF950FXV 984773679 ENCODE Processing Pipeline 986058071648c5e6357dcf1c19a4b354 https://www.encodeproject.org/files/ENCFF687HPG/@@download/ENCFF687HPG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF627KTP bigWig fold change over control ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF123XZJ, ENCFF670KZF 618054035 ENCODE Processing Pipeline 00a58fc1c5c35c1434c547ec25fa44fa https://www.encodeproject.org/files/ENCFF627KTP/@@download/ENCFF627KTP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF174DOR bigWig fold change over control ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF300AEF, ENCFF950FXV 591384197 ENCODE Processing Pipeline eb2d9c7236019e101217319cac8ca120 https://www.encodeproject.org/files/ENCFF174DOR/@@download/ENCFF174DOR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF811TEJ bigWig fold change over control ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF123XZJ, ENCFF300AEF, ENCFF670KZF, ENCFF950FXV 1141190293 ENCODE Processing Pipeline 61b68e1059a488f27c5d8a53fac17bb7 https://www.encodeproject.org/files/ENCFF811TEJ/@@download/ENCFF811TEJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF400XCT bigBed narrowPeak replicated peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF131ZHV 1561442 ENCODE Processing Pipeline 10820a18de457f7fdb1bec9e55a988c3 https://www.encodeproject.org/files/ENCFF400XCT/@@download/ENCFF400XCT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF131ZHV bed narrowPeak replicated peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF160KSU, ENCFF711VRL, ENCFF842AGU 642433 ENCODE Processing Pipeline 81a4fdfe57780f05177e64373747979e https://www.encodeproject.org/files/ENCFF131ZHV/@@download/ENCFF131ZHV.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF572GDM bam unfiltered alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF470QWO 2166387678 ENCODE Processing Pipeline 303179855f3c68341bd4324932581d7f https://www.encodeproject.org/files/ENCFF572GDM/@@download/ENCFF572GDM.bam mm10 released mild to moderate bottlenecking ENCFF676ASY bam alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF470QWO 1532303635 ENCODE Processing Pipeline d4151c5245bd351a882e58773a5831b8 https://www.encodeproject.org/files/ENCFF676ASY/@@download/ENCFF676ASY.bam mm10 released mild to moderate bottlenecking ENCFF592VBX bam unfiltered alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF232IYQ 1977647248 ENCODE Processing Pipeline 32549d3652e9abb1773f09d3e35e2b09 https://www.encodeproject.org/files/ENCFF592VBX/@@download/ENCFF592VBX.bam mm10 released mild to moderate bottlenecking ENCFF471MKR bam alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF232IYQ 1396783768 ENCODE Processing Pipeline 316f25e90296564b7ae1f8b2ecf079d9 https://www.encodeproject.org/files/ENCFF471MKR/@@download/ENCFF471MKR.bam mm10 released mild to moderate bottlenecking ENCFF432EDI bed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF471MKR, ENCFF563KVK 528427 ENCODE Processing Pipeline a6959b686e2e6cbd03e6253d0b53afe4 https://www.encodeproject.org/files/ENCFF432EDI/@@download/ENCFF432EDI.bed.gz mm10 released mild to moderate bottlenecking ENCFF021ZYB bed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF676ASY, ENCFF741BBU 516111 ENCODE Processing Pipeline 537174967151a80db921ff18b99bd123 https://www.encodeproject.org/files/ENCFF021ZYB/@@download/ENCFF021ZYB.bed.gz mm10 released mild to moderate bottlenecking ENCFF105HUC bed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF471MKR, ENCFF563KVK, ENCFF676ASY, ENCFF741BBU 580590 ENCODE Processing Pipeline d0dcdcf9bd1fe36659424e34bf016e3f https://www.encodeproject.org/files/ENCFF105HUC/@@download/ENCFF105HUC.bed.gz mm10 released mild to moderate bottlenecking ENCFF246NLX bigBed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF432EDI 1732160 ENCODE Processing Pipeline db011ec677bacca62109220e2e9a5b16 https://www.encodeproject.org/files/ENCFF246NLX/@@download/ENCFF246NLX.bigBed mm10 released mild to moderate bottlenecking ENCFF064NVM bigBed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF021ZYB 1711668 ENCODE Processing Pipeline 40e0b067558f9b3ed31718ef62121a37 https://www.encodeproject.org/files/ENCFF064NVM/@@download/ENCFF064NVM.bigBed mm10 released mild to moderate bottlenecking ENCFF163KWJ bigBed narrowPeak peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF105HUC 1831597 ENCODE Processing Pipeline 683fc7006e71cea01db85f7faa256190 https://www.encodeproject.org/files/ENCFF163KWJ/@@download/ENCFF163KWJ.bigBed mm10 released mild to moderate bottlenecking ENCFF542LAL bigWig signal p-value ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF471MKR, ENCFF563KVK 602860380 ENCODE Processing Pipeline e561594937f14dedd62cd58d85681e14 https://www.encodeproject.org/files/ENCFF542LAL/@@download/ENCFF542LAL.bigWig mm10 released mild to moderate bottlenecking ENCFF214VOI bigWig signal p-value ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF676ASY, ENCFF741BBU 615730189 ENCODE Processing Pipeline 988f0dbad0f298935d5bf77cd0558fb4 https://www.encodeproject.org/files/ENCFF214VOI/@@download/ENCFF214VOI.bigWig mm10 released mild to moderate bottlenecking ENCFF339WTB bigWig signal p-value ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF471MKR, ENCFF563KVK, ENCFF676ASY, ENCFF741BBU 899044461 ENCODE Processing Pipeline 85b912c8a0ecc5836db7a299160b9da0 https://www.encodeproject.org/files/ENCFF339WTB/@@download/ENCFF339WTB.bigWig mm10 released mild to moderate bottlenecking ENCFF944VFE bigWig fold change over control ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF471MKR, ENCFF563KVK 600592754 ENCODE Processing Pipeline bf533f3e58c5b35d9f227c894d01bd4e https://www.encodeproject.org/files/ENCFF944VFE/@@download/ENCFF944VFE.bigWig mm10 released mild to moderate bottlenecking ENCFF396LWK bigWig fold change over control ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF676ASY, ENCFF741BBU 655434193 ENCODE Processing Pipeline 8309ba8a60b18a5e44d3e98cd4bf9c23 https://www.encodeproject.org/files/ENCFF396LWK/@@download/ENCFF396LWK.bigWig mm10 released mild to moderate bottlenecking ENCFF178JLS bigWig fold change over control ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF471MKR, ENCFF563KVK, ENCFF676ASY, ENCFF741BBU 1128847939 ENCODE Processing Pipeline dc3ca34149b29fa0d378ae715216918a https://www.encodeproject.org/files/ENCFF178JLS/@@download/ENCFF178JLS.bigWig mm10 released mild to moderate bottlenecking ENCFF909OUL bed narrowPeak replicated peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF021ZYB, ENCFF105HUC, ENCFF432EDI 638074 ENCODE Processing Pipeline e208aa48bc229c54809e6ef9651871ac https://www.encodeproject.org/files/ENCFF909OUL/@@download/ENCFF909OUL.bed.gz mm10 released mild to moderate bottlenecking ENCFF378EDX bigBed narrowPeak replicated peaks ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF909OUL 1552822 ENCODE Processing Pipeline df5ef8e7d815f957fc9bab555b453bfa https://www.encodeproject.org/files/ENCFF378EDX/@@download/ENCFF378EDX.bigBed mm10 released mild to moderate bottlenecking ENCFF807YNF fastq reads ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 395335320 Bing Ren, UCSD b7237b7a0a6705031665a23f4ae7f1e5 SRA:SRR3652679 https://www.encodeproject.org/files/ENCFF807YNF/@@download/ENCFF807YNF.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF129BRG fastq reads ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1555553818 Bing Ren, UCSD ea00b675059619e7812b30eb2e4f7a18 SRA:SRR3652681 https://www.encodeproject.org/files/ENCFF129BRG/@@download/ENCFF129BRG.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF195VIV fastq reads ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 3 50 single-ended 74158081 Bing Ren, UCSD e2ad3bf9159778ea2b7d9f2611364865 SRA:SRR3652682 https://www.encodeproject.org/files/ENCFF195VIV/@@download/ENCFF195VIV.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF562YFW fastq reads ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1610233381 Bing Ren, UCSD 7dd80edb8f953321860492d32d1fbb4f SRA:SRR3652680 https://www.encodeproject.org/files/ENCFF562YFW/@@download/ENCFF562YFW.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF088MXW fastq reads ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 408648114 Bing Ren, UCSD b750f7a13c472bdfa2b0d622ba53e44e SRA:SRR3652683 https://www.encodeproject.org/files/ENCFF088MXW/@@download/ENCFF088MXW.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF581EXC bam alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF562YFW, ENCFF806TVZ, ENCFF807YNF 2005261425 ENCODE Processing Pipeline f0bcd15b662b118b210da4989d4d7a29 https://www.encodeproject.org/files/ENCFF581EXC/@@download/ENCFF581EXC.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF071EKX bam alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF088MXW, ENCFF129BRG, ENCFF195VIV, ENCFF806TVZ 2026803988 ENCODE Processing Pipeline 153d24ac8632a495532002f8fcad3127 https://www.encodeproject.org/files/ENCFF071EKX/@@download/ENCFF071EKX.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF279XLE bam unfiltered alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF018NEO, ENCFF088MXW, ENCFF129BRG, ENCFF195VIV 2825932066 ENCODE Processing Pipeline c31888ba82fccd0f7ac52af30a7edd4d https://www.encodeproject.org/files/ENCFF279XLE/@@download/ENCFF279XLE.bam mm10 released sequencing runs labeled as technical replicates ENCFF462RFR bam unfiltered alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF018NEO, ENCFF562YFW, ENCFF807YNF 2784529180 ENCODE Processing Pipeline d7430fdb9edd871b13d46c41aec47532 https://www.encodeproject.org/files/ENCFF462RFR/@@download/ENCFF462RFR.bam mm10 released sequencing runs labeled as technical replicates ENCFF270SEO bam alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF088MXW, ENCFF129BRG, ENCFF195VIV 2026281347 ENCODE Processing Pipeline 005fcd887753024e21b49c1d7c795c1f https://www.encodeproject.org/files/ENCFF270SEO/@@download/ENCFF270SEO.bam mm10 released sequencing runs labeled as technical replicates ENCFF652BTE bam alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF562YFW, ENCFF807YNF 2004797241 ENCODE Processing Pipeline a0852975c4c7c934c224a9f153b153e8 https://www.encodeproject.org/files/ENCFF652BTE/@@download/ENCFF652BTE.bam mm10 released sequencing runs labeled as technical replicates ENCFF002AFC fastq reads ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1383524453 Bing Ren, UCSD 4d11e12fbcbaa99f284b7518b1176713 SRA:SRR3651840 https://www.encodeproject.org/files/ENCFF002AFC/@@download/ENCFF002AFC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQN/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002AFG fastq reads ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1388735190 Bing Ren, UCSD 87476326986e9d46f4ce2ad5a53c5767 SRA:SRR3651839 https://www.encodeproject.org/files/ENCFF002AFG/@@download/ENCFF002AFG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF243MUG bam alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFG, ENCFF806TVZ 1118170790 ENCODE Processing Pipeline 21136c4ce5792a218ee9c0c762a1615f https://www.encodeproject.org/files/ENCFF243MUG/@@download/ENCFF243MUG.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF780AMJ bam alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFC, ENCFF806TVZ 888195852 ENCODE Processing Pipeline 029b075185be0a12d4aa90afc3a11352 https://www.encodeproject.org/files/ENCFF780AMJ/@@download/ENCFF780AMJ.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF938HUU bed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF243MUG, ENCFF362MXD, ENCFF576KAS, ENCFF780AMJ 1173795 ENCODE Processing Pipeline 3eb35082661707e7954a73ceaa935b44 https://www.encodeproject.org/files/ENCFF938HUU/@@download/ENCFF938HUU.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF122WTM bed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF243MUG, ENCFF362MXD 777932 ENCODE Processing Pipeline c0ca262160cfc42428246ce95535feb9 https://www.encodeproject.org/files/ENCFF122WTM/@@download/ENCFF122WTM.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF523KOL bed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF780AMJ 1669832 ENCODE Processing Pipeline 4c007802f1d5e4e976bda2f01fedd8a5 https://www.encodeproject.org/files/ENCFF523KOL/@@download/ENCFF523KOL.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF806TNN bigBed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF122WTM 2044357 ENCODE Processing Pipeline 505ed1053a3b720f16c660490e4cb1df https://www.encodeproject.org/files/ENCFF806TNN/@@download/ENCFF806TNN.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF547TOP bigBed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF523KOL 3700113 ENCODE Processing Pipeline 5e2ed7ce619a87cc828038f3e5317f0d https://www.encodeproject.org/files/ENCFF547TOP/@@download/ENCFF547TOP.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF464OCL bigBed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF938HUU 3445464 ENCODE Processing Pipeline 4771c174bdb705beb57134e4d08e7523 https://www.encodeproject.org/files/ENCFF464OCL/@@download/ENCFF464OCL.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF768GIL bigWig signal p-value ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF243MUG, ENCFF362MXD 324887387 ENCODE Processing Pipeline c6c5fcd8568a013901ef4e52997adf1e https://www.encodeproject.org/files/ENCFF768GIL/@@download/ENCFF768GIL.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF385VYX bigWig signal p-value ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF780AMJ 494051587 ENCODE Processing Pipeline dfbf8507f7fc3b419aebd92397de0f7e https://www.encodeproject.org/files/ENCFF385VYX/@@download/ENCFF385VYX.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF851JGE bigWig signal p-value ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF243MUG, ENCFF362MXD, ENCFF576KAS, ENCFF780AMJ 719281314 ENCODE Processing Pipeline 232aa91ee693752d3c5437afc94c8ba3 https://www.encodeproject.org/files/ENCFF851JGE/@@download/ENCFF851JGE.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF742BQO bigWig fold change over control ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF243MUG, ENCFF362MXD 401659199 ENCODE Processing Pipeline add7eb086659b1dcd35e2f8d3d0c8e66 https://www.encodeproject.org/files/ENCFF742BQO/@@download/ENCFF742BQO.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF343IIU bigWig fold change over control ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF780AMJ 453669100 ENCODE Processing Pipeline 65c251905e529847c976da2967be908c https://www.encodeproject.org/files/ENCFF343IIU/@@download/ENCFF343IIU.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF670LZU bed narrowPeak replicated peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF122WTM, ENCFF523KOL, ENCFF938HUU 996641 ENCODE Processing Pipeline 10b823b1bd2d8aa315e01491ac9361b1 https://www.encodeproject.org/files/ENCFF670LZU/@@download/ENCFF670LZU.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF359JHR bigWig fold change over control ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF243MUG, ENCFF362MXD, ENCFF576KAS, ENCFF780AMJ 722617362 ENCODE Processing Pipeline f5a41048113252df1c070c21b2827adf https://www.encodeproject.org/files/ENCFF359JHR/@@download/ENCFF359JHR.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF748FLC bigBed narrowPeak replicated peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF670LZU 2432198 ENCODE Processing Pipeline bad6c40b689aef01d941d761a6418fa2 https://www.encodeproject.org/files/ENCFF748FLC/@@download/ENCFF748FLC.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF280QWF bam unfiltered alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFC, ENCFF018NEO 1445578502 ENCODE Processing Pipeline 70d3f008fb66fca1212f69080633edce https://www.encodeproject.org/files/ENCFF280QWF/@@download/ENCFF280QWF.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF736NVD bam alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFC, ENCFF018NEO 887993802 ENCODE Processing Pipeline dc3d37309a12f44c4fd7ccd2655e3d36 https://www.encodeproject.org/files/ENCFF736NVD/@@download/ENCFF736NVD.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF327HNU bam unfiltered alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFG, ENCFF018NEO 1263832690 ENCODE Processing Pipeline 4f30a5d13c9065275bfa1033546f8918 https://www.encodeproject.org/files/ENCFF327HNU/@@download/ENCFF327HNU.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF769FGA bam alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFG, ENCFF018NEO 859618582 ENCODE Processing Pipeline 5e2cffda19dbb2704631059b4c36e066 https://www.encodeproject.org/files/ENCFF769FGA/@@download/ENCFF769FGA.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF057XMF bed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF769FGA 751250 ENCODE Processing Pipeline 95ef30bb13d5c3938f60e3e6ba079100 https://www.encodeproject.org/files/ENCFF057XMF/@@download/ENCFF057XMF.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF699ZHG bed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255MPO, ENCFF304BRA, ENCFF736NVD 1653524 ENCODE Processing Pipeline 8d5f34ca43ef14c3805ceb2cfe50366f https://www.encodeproject.org/files/ENCFF699ZHG/@@download/ENCFF699ZHG.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF742IQJ bigBed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF057XMF 1987220 ENCODE Processing Pipeline fe84e90e2735744f642ab7b84dfdcb8e https://www.encodeproject.org/files/ENCFF742IQJ/@@download/ENCFF742IQJ.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF050JTY bed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF736NVD, ENCFF769FGA 1309022 ENCODE Processing Pipeline c99be6ac874bf07c5dfdfe56bae4cb48 https://www.encodeproject.org/files/ENCFF050JTY/@@download/ENCFF050JTY.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF164HRP bigBed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF699ZHG 3682609 ENCODE Processing Pipeline 7dc9834e5bad192303768167d7b661f4 https://www.encodeproject.org/files/ENCFF164HRP/@@download/ENCFF164HRP.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF397LLA bigBed narrowPeak peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF050JTY 3789166 ENCODE Processing Pipeline 33d8f03b7d86ebca380a82b264c91ee5 https://www.encodeproject.org/files/ENCFF397LLA/@@download/ENCFF397LLA.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF485RPF bigWig signal p-value ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF769FGA 350089357 ENCODE Processing Pipeline 12297ae33a5797ee034ba708b4a013e0 https://www.encodeproject.org/files/ENCFF485RPF/@@download/ENCFF485RPF.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF828BFA bigWig fold change over control ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF769FGA 381509118 ENCODE Processing Pipeline 9b3c806cc051713f954a325316751964 https://www.encodeproject.org/files/ENCFF828BFA/@@download/ENCFF828BFA.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF529QLL bigWig signal p-value ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255MPO, ENCFF304BRA, ENCFF736NVD 464505948 ENCODE Processing Pipeline 23cdcc6381160a738e949fbda3397d1c https://www.encodeproject.org/files/ENCFF529QLL/@@download/ENCFF529QLL.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF501GNQ bigWig signal p-value ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF736NVD, ENCFF769FGA 701800952 ENCODE Processing Pipeline 32b65892459a28d6122bf4b71a01c37d https://www.encodeproject.org/files/ENCFF501GNQ/@@download/ENCFF501GNQ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF081QRN bigWig fold change over control ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255MPO, ENCFF304BRA, ENCFF736NVD 445825042 ENCODE Processing Pipeline 2162be6bdf4462a9999f00d1132e278c https://www.encodeproject.org/files/ENCFF081QRN/@@download/ENCFF081QRN.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF036PPT bigWig fold change over control ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF736NVD, ENCFF769FGA 704971611 ENCODE Processing Pipeline 87fb023e8437e47dd8766f5861387dd5 https://www.encodeproject.org/files/ENCFF036PPT/@@download/ENCFF036PPT.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF998WFE bed narrowPeak replicated peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF050JTY, ENCFF057XMF, ENCFF699ZHG 984192 ENCODE Processing Pipeline 19352b9788057e484c7c24459f20a3fc https://www.encodeproject.org/files/ENCFF998WFE/@@download/ENCFF998WFE.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF752VLC bigBed narrowPeak replicated peaks ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF998WFE 2388037 ENCODE Processing Pipeline b25ca4288cfcecf3ffbcc71c238ba29a https://www.encodeproject.org/files/ENCFF752VLC/@@download/ENCFF752VLC.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF382TPS fastq reads ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2709942854 Bing Ren, UCSD 42cb39ce7c8f58f77958188deb29e851 SRA:SRR3653073 https://www.encodeproject.org/files/ENCFF382TPS/@@download/ENCFF382TPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF768AVK fastq reads ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 259537455 Bing Ren, UCSD 2b84281c0aaedee4b9dbff05aa3e623a SRA:SRR3653074 https://www.encodeproject.org/files/ENCFF768AVK/@@download/ENCFF768AVK.fastq.gz Illumina HiSeq 2500 /files/ENCFF853ZDE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF756IXU fastq reads ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3696083602 Bing Ren, UCSD 439f2a1b80ae3141b5c09e26fef447b6 SRA:SRR3653075 https://www.encodeproject.org/files/ENCFF756IXU/@@download/ENCFF756IXU.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF307XDF bam alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF382TPS, ENCFF768AVK, ENCFF806TVZ 2617685870 ENCODE Processing Pipeline de18f12d05e6a56d9c85680ce8d7893d https://www.encodeproject.org/files/ENCFF307XDF/@@download/ENCFF307XDF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF803BGS bam alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF756IXU, ENCFF806TVZ 3230376966 ENCODE Processing Pipeline 169a11f02da2b47ca23f103a0199c84f https://www.encodeproject.org/files/ENCFF803BGS/@@download/ENCFF803BGS.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF290PAD bed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF307XDF, ENCFF309QAZ 3298261 ENCODE Processing Pipeline 7b13e01fed8f2859b8c22a54f150267c https://www.encodeproject.org/files/ENCFF290PAD/@@download/ENCFF290PAD.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF324NOI bed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF309QAZ, ENCFF803BGS 3178675 ENCODE Processing Pipeline a5bd182f0f6f41dc396fd96469b9b0c9 https://www.encodeproject.org/files/ENCFF324NOI/@@download/ENCFF324NOI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF108UKD bed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF307XDF, ENCFF309QAZ, ENCFF803BGS 3372170 ENCODE Processing Pipeline de7739f9f1ef58a82ed59c2aaf56213b https://www.encodeproject.org/files/ENCFF108UKD/@@download/ENCFF108UKD.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF249EUX bigBed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF290PAD 6676044 ENCODE Processing Pipeline 40474e2d526f1163fb7b348b03598b75 https://www.encodeproject.org/files/ENCFF249EUX/@@download/ENCFF249EUX.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF923AKT bigBed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF324NOI 8352966 ENCODE Processing Pipeline 0dd66b9b7ff32e12f3339b38e4eb7050 https://www.encodeproject.org/files/ENCFF923AKT/@@download/ENCFF923AKT.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF277HBU bigWig signal p-value ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF309QAZ, ENCFF803BGS 1073921777 ENCODE Processing Pipeline 03b61345acad4333a1e2be522cd90b44 https://www.encodeproject.org/files/ENCFF277HBU/@@download/ENCFF277HBU.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF501MUU bigBed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF108UKD 8814323 ENCODE Processing Pipeline 0092ebd66dad527d22057350ea408d6e https://www.encodeproject.org/files/ENCFF501MUU/@@download/ENCFF501MUU.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF573GSA bigWig signal p-value ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF307XDF, ENCFF309QAZ 893040954 ENCODE Processing Pipeline 0a9498892c7a7b60acaf13935f5ed6cd https://www.encodeproject.org/files/ENCFF573GSA/@@download/ENCFF573GSA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF791OET bigWig signal p-value ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF307XDF, ENCFF309QAZ, ENCFF803BGS 1405329462 ENCODE Processing Pipeline 843ca61b7c6352608c6476d1dc3e2b73 https://www.encodeproject.org/files/ENCFF791OET/@@download/ENCFF791OET.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF484GUC bigWig fold change over control ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF309QAZ, ENCFF803BGS 1089195412 ENCODE Processing Pipeline d365be38b330b5ac0ce52c5176c61b97 https://www.encodeproject.org/files/ENCFF484GUC/@@download/ENCFF484GUC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF113GYU bigWig fold change over control ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF307XDF, ENCFF309QAZ 979764454 ENCODE Processing Pipeline 11bfa00025c1e2b9253a78c48a584217 https://www.encodeproject.org/files/ENCFF113GYU/@@download/ENCFF113GYU.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF242BXD bigWig fold change over control ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF307XDF, ENCFF309QAZ, ENCFF803BGS 1611459247 ENCODE Processing Pipeline 963db29fb3be0377dbb0c48bf2b48fc4 https://www.encodeproject.org/files/ENCFF242BXD/@@download/ENCFF242BXD.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF542DTE bigBed narrowPeak replicated peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF511KTD 6092608 ENCODE Processing Pipeline f30b70f7c2dac0cac5033be55bf645b0 https://www.encodeproject.org/files/ENCFF542DTE/@@download/ENCFF542DTE.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF511KTD bed narrowPeak replicated peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF108UKD, ENCFF290PAD, ENCFF324NOI 2894207 ENCODE Processing Pipeline 9c157fc17b88a1769598012e68ff6795 https://www.encodeproject.org/files/ENCFF511KTD/@@download/ENCFF511KTD.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF471FNR bam unfiltered alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF382TPS, ENCFF768AVK 3553441582 ENCODE Processing Pipeline 95c475423eb1dd2a8b5f6c92bfbaf0d9 https://www.encodeproject.org/files/ENCFF471FNR/@@download/ENCFF471FNR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF365YFQ bam alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF382TPS, ENCFF768AVK 2617205655 ENCODE Processing Pipeline fa11fef287f7f04e08aaed98e2034a27 https://www.encodeproject.org/files/ENCFF365YFQ/@@download/ENCFF365YFQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF645REP bam unfiltered alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF756IXU 4371284286 ENCODE Processing Pipeline b0654b0ec538a527086133a87fa53b1e https://www.encodeproject.org/files/ENCFF645REP/@@download/ENCFF645REP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF846QYV bam alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF756IXU 3229741913 ENCODE Processing Pipeline 269033c0232a4565db66a1dd65a2489b https://www.encodeproject.org/files/ENCFF846QYV/@@download/ENCFF846QYV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF970DTX bed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF365YFQ 2598174 ENCODE Processing Pipeline 7814f1c3d63fef07aa905e75fe2dadf5 https://www.encodeproject.org/files/ENCFF970DTX/@@download/ENCFF970DTX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF629CXH bed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF365YFQ, ENCFF805AXD, ENCFF846QYV 3409687 ENCODE Processing Pipeline ae4f285341c9644f99f9085bcf635119 https://www.encodeproject.org/files/ENCFF629CXH/@@download/ENCFF629CXH.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF327SGH bed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF805AXD, ENCFF846QYV 3322886 ENCODE Processing Pipeline 1fd001b36519959e044133b68ac09670 https://www.encodeproject.org/files/ENCFF327SGH/@@download/ENCFF327SGH.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF880VRT bigBed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF970DTX 5430678 ENCODE Processing Pipeline 248adb7add45a2d045721fdd3dd29c25 https://www.encodeproject.org/files/ENCFF880VRT/@@download/ENCFF880VRT.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF255VBB bigBed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF327SGH 8702808 ENCODE Processing Pipeline ec2d5b7d9576d7a7f8a19c35e354cdae https://www.encodeproject.org/files/ENCFF255VBB/@@download/ENCFF255VBB.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF655ORU bigBed narrowPeak peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF629CXH 8964337 ENCODE Processing Pipeline d877e05425e70d8fb6c23a54d5a7f51b https://www.encodeproject.org/files/ENCFF655ORU/@@download/ENCFF655ORU.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF794DYB bigWig signal p-value ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF805AXD, ENCFF846QYV 870850040 ENCODE Processing Pipeline 01042e9f079f046447dc94d6ab4057f5 https://www.encodeproject.org/files/ENCFF794DYB/@@download/ENCFF794DYB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF032MZA bigWig signal p-value ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF365YFQ 831328268 ENCODE Processing Pipeline b757bca8f367537d0621203dd18a8d90 https://www.encodeproject.org/files/ENCFF032MZA/@@download/ENCFF032MZA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF337DKB bigWig signal p-value ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF365YFQ, ENCFF805AXD, ENCFF846QYV 1529790930 ENCODE Processing Pipeline 4d875a2a22c6eab28abb3e1eabebab80 https://www.encodeproject.org/files/ENCFF337DKB/@@download/ENCFF337DKB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF637KSU bigWig fold change over control ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF805AXD, ENCFF846QYV 1163272056 ENCODE Processing Pipeline eec7aed980fc01c7b34dca3e65c7cd02 https://www.encodeproject.org/files/ENCFF637KSU/@@download/ENCFF637KSU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF245DIU bigWig fold change over control ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF365YFQ 832148103 ENCODE Processing Pipeline b3a5c7808bb1f13a0f64384f664235fb https://www.encodeproject.org/files/ENCFF245DIU/@@download/ENCFF245DIU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF555JQE bigWig fold change over control ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF365YFQ, ENCFF805AXD, ENCFF846QYV 1651239479 ENCODE Processing Pipeline c69fcfb0067a80731204289c3a6e7abc https://www.encodeproject.org/files/ENCFF555JQE/@@download/ENCFF555JQE.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF832NUL bed narrowPeak replicated peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF327SGH, ENCFF629CXH, ENCFF970DTX 2863598 ENCODE Processing Pipeline 800d65eae8663e5b531e51e597b38587 https://www.encodeproject.org/files/ENCFF832NUL/@@download/ENCFF832NUL.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF941QAT bigBed narrowPeak replicated peaks ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF832NUL 6035013 ENCODE Processing Pipeline 5f7c2163d1a2a86b4dd72f0031e2cbd5 https://www.encodeproject.org/files/ENCFF941QAT/@@download/ENCFF941QAT.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF673XJI fastq reads ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1866155419 Bing Ren, UCSD 7dec0074544eb5c5b8004cdbf133ef83 SRA:SRR3652275 https://www.encodeproject.org/files/ENCFF673XJI/@@download/ENCFF673XJI.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF605YBP fastq reads ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2030971533 Bing Ren, UCSD 531a62e263d21a1f7afa3e18f5a9fc87 SRA:SRR3652276 https://www.encodeproject.org/files/ENCFF605YBP/@@download/ENCFF605YBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF629DBB bam alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF673XJI, ENCFF806TVZ 1417244193 ENCODE Processing Pipeline 65feb552369c205ebda057c83ebaccda https://www.encodeproject.org/files/ENCFF629DBB/@@download/ENCFF629DBB.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF189FZN bam alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF605YBP, ENCFF806TVZ 1299717598 ENCODE Processing Pipeline e17d47c5f348c64e03bbef95f312a52d https://www.encodeproject.org/files/ENCFF189FZN/@@download/ENCFF189FZN.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF901YLP bed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF309QAZ, ENCFF629DBB 894239 ENCODE Processing Pipeline 46d62c1c5da545209835e83108a45d28 https://www.encodeproject.org/files/ENCFF901YLP/@@download/ENCFF901YLP.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF039QSF bigBed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF901YLP 2808003 ENCODE Processing Pipeline 9bf660537ca8ec38e2a85314d7b0ef00 https://www.encodeproject.org/files/ENCFF039QSF/@@download/ENCFF039QSF.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF514PNZ bigBed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF323GTT 3072680 ENCODE Processing Pipeline 0f568e606725b2867d708f5b822945d5 https://www.encodeproject.org/files/ENCFF514PNZ/@@download/ENCFF514PNZ.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF406WCD bigBed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF402UPU 2777498 ENCODE Processing Pipeline 7a42ec28f9b7b6ca9db24c3b30858ffc https://www.encodeproject.org/files/ENCFF406WCD/@@download/ENCFF406WCD.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF402UPU bed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF189FZN 890048 ENCODE Processing Pipeline be00e126d4335dcfe0c1b626c44182b7 https://www.encodeproject.org/files/ENCFF402UPU/@@download/ENCFF402UPU.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF984GVZ bigWig signal p-value ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF189FZN 456150936 ENCODE Processing Pipeline 81257bcac1afd54e3d6135bc0208fa66 https://www.encodeproject.org/files/ENCFF984GVZ/@@download/ENCFF984GVZ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF323GTT bed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF189FZN, ENCFF309QAZ, ENCFF629DBB 1003841 ENCODE Processing Pipeline 3ca927bb6d720da9d9e243e53b71cdad https://www.encodeproject.org/files/ENCFF323GTT/@@download/ENCFF323GTT.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF877VIU bigWig signal p-value ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF309QAZ, ENCFF629DBB 447062035 ENCODE Processing Pipeline 857fc5a223db0ac418eb69c385be1d1f https://www.encodeproject.org/files/ENCFF877VIU/@@download/ENCFF877VIU.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF465LNG bigWig fold change over control ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF189FZN 441812659 ENCODE Processing Pipeline 7656b41a91356c9099722e39f879c42f https://www.encodeproject.org/files/ENCFF465LNG/@@download/ENCFF465LNG.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF226HNJ bigWig signal p-value ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF189FZN, ENCFF309QAZ, ENCFF629DBB 773863989 ENCODE Processing Pipeline edf3d3196b23529952d46a3d55414952 https://www.encodeproject.org/files/ENCFF226HNJ/@@download/ENCFF226HNJ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF356YDV bigWig fold change over control ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF309QAZ, ENCFF629DBB 498731750 ENCODE Processing Pipeline 9666fd6b1f87362d0a91bb2d82da37c3 https://www.encodeproject.org/files/ENCFF356YDV/@@download/ENCFF356YDV.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF673VXD bigWig fold change over control ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF189FZN, ENCFF309QAZ, ENCFF629DBB 894104262 ENCODE Processing Pipeline a20e50d00bcf517bff34fcc69a5f058a https://www.encodeproject.org/files/ENCFF673VXD/@@download/ENCFF673VXD.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF502SQP bigBed narrowPeak replicated peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF624OQG 2387864 ENCODE Processing Pipeline 0b311023494d1c44db03b180828e0ee7 https://www.encodeproject.org/files/ENCFF502SQP/@@download/ENCFF502SQP.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF624OQG bed narrowPeak replicated peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF323GTT, ENCFF402UPU, ENCFF901YLP 1047951 ENCODE Processing Pipeline 2c4289f62f252be58bc08920971c83bc https://www.encodeproject.org/files/ENCFF624OQG/@@download/ENCFF624OQG.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF955MVR bam unfiltered alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF605YBP 2184257484 ENCODE Processing Pipeline 98483a6cc218fdcdb9b3402a47c6a9ad https://www.encodeproject.org/files/ENCFF955MVR/@@download/ENCFF955MVR.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF670SVK bam unfiltered alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF673XJI 2053088330 ENCODE Processing Pipeline f3fd96a23c389a8578cdc4a576dfc1f3 https://www.encodeproject.org/files/ENCFF670SVK/@@download/ENCFF670SVK.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF161FKJ bam alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF605YBP 1299590484 ENCODE Processing Pipeline 2cb3b3b7e6064431c3b76926baefafcd https://www.encodeproject.org/files/ENCFF161FKJ/@@download/ENCFF161FKJ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF973RNO bam alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF673XJI 1417072900 ENCODE Processing Pipeline cb15a9a2ab55f176a80cb55301254634 https://www.encodeproject.org/files/ENCFF973RNO/@@download/ENCFF973RNO.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF978ICB bed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF161FKJ, ENCFF805AXD 890916 ENCODE Processing Pipeline 21f3f9476288a5a9cb3f79b2e7b3544a https://www.encodeproject.org/files/ENCFF978ICB/@@download/ENCFF978ICB.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF878KGI bed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF973RNO 895147 ENCODE Processing Pipeline 03e05a6ebc0501881d41e1369b249abb https://www.encodeproject.org/files/ENCFF878KGI/@@download/ENCFF878KGI.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF428DHW bed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF161FKJ, ENCFF805AXD, ENCFF973RNO 1014790 ENCODE Processing Pipeline 0a29dcb5ae246b6ad7318bee53a47480 https://www.encodeproject.org/files/ENCFF428DHW/@@download/ENCFF428DHW.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF907RVP bigBed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF978ICB 2793913 ENCODE Processing Pipeline 08482b5b9a499b82195f413771cc1e7b https://www.encodeproject.org/files/ENCFF907RVP/@@download/ENCFF907RVP.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF204FEE bigBed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF878KGI 2802923 ENCODE Processing Pipeline 6be70a3b4367c0afdddcbc6d4bf634e9 https://www.encodeproject.org/files/ENCFF204FEE/@@download/ENCFF204FEE.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF091KMQ bigBed narrowPeak peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF428DHW 3101867 ENCODE Processing Pipeline b17f2b850706eeca8233059107289a45 https://www.encodeproject.org/files/ENCFF091KMQ/@@download/ENCFF091KMQ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF586SBE bigWig signal p-value ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF161FKJ, ENCFF805AXD 571594598 ENCODE Processing Pipeline 921d6e47b6246decc04474a2829b28dd https://www.encodeproject.org/files/ENCFF586SBE/@@download/ENCFF586SBE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF565TTA bigWig signal p-value ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF973RNO 492957540 ENCODE Processing Pipeline de09ac2ee071d0095bf974e2d7248d4d https://www.encodeproject.org/files/ENCFF565TTA/@@download/ENCFF565TTA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF204JGN bigWig signal p-value ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF161FKJ, ENCFF805AXD, ENCFF973RNO 778547583 ENCODE Processing Pipeline 906aa10e2be0fe3a9014f1c3ad1aee49 https://www.encodeproject.org/files/ENCFF204JGN/@@download/ENCFF204JGN.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF557TPM bigWig fold change over control ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF161FKJ, ENCFF805AXD 503195439 ENCODE Processing Pipeline f2fba922574d6116bdb1a692d0c35465 https://www.encodeproject.org/files/ENCFF557TPM/@@download/ENCFF557TPM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF158XQY bigWig fold change over control ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF973RNO 496741205 ENCODE Processing Pipeline 7b822717b2500b072ea64df35070360b https://www.encodeproject.org/files/ENCFF158XQY/@@download/ENCFF158XQY.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF087WAM bigWig fold change over control ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF161FKJ, ENCFF805AXD, ENCFF973RNO 986227817 ENCODE Processing Pipeline 7d64add42d13ffebc71049b44d0029cb https://www.encodeproject.org/files/ENCFF087WAM/@@download/ENCFF087WAM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF112TNK bed narrowPeak replicated peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF428DHW, ENCFF878KGI, ENCFF978ICB 1067848 ENCODE Processing Pipeline c091a80c29b1cf33fb697f8f4e7541d8 https://www.encodeproject.org/files/ENCFF112TNK/@@download/ENCFF112TNK.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF504GHN bigBed narrowPeak replicated peaks ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF112TNK 2409637 ENCODE Processing Pipeline adb1a003ba8f22614e95fa3dc9719b95 https://www.encodeproject.org/files/ENCFF504GHN/@@download/ENCFF504GHN.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF002APJ fastq reads ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1905050795 Bing Ren, UCSD 00269f8ff9900996a7c88d34f6c44232 SRA:SRR3651226 https://www.encodeproject.org/files/ENCFF002APJ/@@download/ENCFF002APJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARJ/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF002APK fastq reads ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 2764890389 Bing Ren, UCSD 9ace4135941c140175d51214ac6e8668 SRA:SRR3651227 https://www.encodeproject.org/files/ENCFF002APK/@@download/ENCFF002APK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARK/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths severe bottlenecking, poor library complexity ENCFF185OAQ bam alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APK, ENCFF806TVZ 882427897 ENCODE Processing Pipeline 65f29d7f71ee34abff8aa63a768bdbf4 https://www.encodeproject.org/files/ENCFF185OAQ/@@download/ENCFF185OAQ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF591GQW bam alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APJ, ENCFF806TVZ 1161385370 ENCODE Processing Pipeline 5a2104ec5b895671a810981c67f4c4b0 https://www.encodeproject.org/files/ENCFF591GQW/@@download/ENCFF591GQW.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF976SBR bed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF185OAQ, ENCFF444YOE, ENCFF934LFS 1050374 ENCODE Processing Pipeline f56bde56c5e7ad5af1ae74ffb7ea86c9 https://www.encodeproject.org/files/ENCFF976SBR/@@download/ENCFF976SBR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF690HPF bigBed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF976SBR 2550967 ENCODE Processing Pipeline 5688dd44bfe140f6d020215e70f7818d https://www.encodeproject.org/files/ENCFF690HPF/@@download/ENCFF690HPF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF336VYG bed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF591GQW, ENCFF934LFS 961036 ENCODE Processing Pipeline 2c85813d1878a75501cd5d9518512fdc https://www.encodeproject.org/files/ENCFF336VYG/@@download/ENCFF336VYG.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF075IGT bigBed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF336VYG 2397290 ENCODE Processing Pipeline 9f7a42409cf0554d7e21fd99de49e93a https://www.encodeproject.org/files/ENCFF075IGT/@@download/ENCFF075IGT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF582QIP bed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185OAQ, ENCFF444YOE, ENCFF591GQW, ENCFF934LFS 1068757 ENCODE Processing Pipeline c9bdbde87ede8916a3d781a79ec8fefa https://www.encodeproject.org/files/ENCFF582QIP/@@download/ENCFF582QIP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF988FHY bigBed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF582QIP 2577076 ENCODE Processing Pipeline 7b727a2eb12d75101b50d261f4abf8f0 https://www.encodeproject.org/files/ENCFF988FHY/@@download/ENCFF988FHY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF275FNB bigWig signal p-value ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF185OAQ, ENCFF444YOE, ENCFF934LFS 353564726 ENCODE Processing Pipeline 7ca20a907637b75d612e291e933b9a31 https://www.encodeproject.org/files/ENCFF275FNB/@@download/ENCFF275FNB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF953VDB bigWig signal p-value ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF591GQW, ENCFF934LFS 474295370 ENCODE Processing Pipeline 675258ce0120815fdf75a6fadd7c392e https://www.encodeproject.org/files/ENCFF953VDB/@@download/ENCFF953VDB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF056JXW bigWig signal p-value ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185OAQ, ENCFF444YOE, ENCFF591GQW, ENCFF934LFS 660028015 ENCODE Processing Pipeline 3cadba5a9ad35ef88bc2577d1b172d30 https://www.encodeproject.org/files/ENCFF056JXW/@@download/ENCFF056JXW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF407UUN bigWig fold change over control ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF185OAQ, ENCFF444YOE, ENCFF934LFS 405176199 ENCODE Processing Pipeline 7a777d8246a2e125fef53ff749c8c02f https://www.encodeproject.org/files/ENCFF407UUN/@@download/ENCFF407UUN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF570PBP bigWig fold change over control ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF591GQW, ENCFF934LFS 451459026 ENCODE Processing Pipeline 953b7c7d68538e6d80f4989f921ade87 https://www.encodeproject.org/files/ENCFF570PBP/@@download/ENCFF570PBP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF207DSM bigWig fold change over control ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185OAQ, ENCFF444YOE, ENCFF591GQW, ENCFF934LFS 707540675 ENCODE Processing Pipeline 4fb918844fe80d0e96f295dc82a839fc https://www.encodeproject.org/files/ENCFF207DSM/@@download/ENCFF207DSM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF268JES bigBed narrowPeak replicated peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF956ZKQ 1392168 ENCODE Processing Pipeline cb8d4b0590b7ecb5a10a809bbc6b51c4 https://www.encodeproject.org/files/ENCFF268JES/@@download/ENCFF268JES.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF956ZKQ bed narrowPeak replicated peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF336VYG, ENCFF582QIP, ENCFF976SBR 640887 ENCODE Processing Pipeline 1ee48c1e2a58173b5badafab653aa25d https://www.encodeproject.org/files/ENCFF956ZKQ/@@download/ENCFF956ZKQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF658BNB bam unfiltered alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APJ, ENCFF018NEO 1618504512 ENCODE Processing Pipeline 22d956eb9f44445965eb3c40132aea62 https://www.encodeproject.org/files/ENCFF658BNB/@@download/ENCFF658BNB.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF598OCZ bam unfiltered alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APK, ENCFF018NEO 2927718269 ENCODE Processing Pipeline 2bf4997c082be91eb70d4c4d3e5af46c https://www.encodeproject.org/files/ENCFF598OCZ/@@download/ENCFF598OCZ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF182WFB bam alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APJ, ENCFF018NEO 901833398 ENCODE Processing Pipeline e6a8f14f8bf4ab47e9cc3da9865dfdcb https://www.encodeproject.org/files/ENCFF182WFB/@@download/ENCFF182WFB.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF871KGD bam alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APK, ENCFF018NEO 882217941 ENCODE Processing Pipeline d985003bc0add5adf28450d59e11fcf3 https://www.encodeproject.org/files/ENCFF871KGD/@@download/ENCFF871KGD.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF932MFT bed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF871KGD 974807 ENCODE Processing Pipeline af0614e2fbdf7ada4ae9bc81f674195d https://www.encodeproject.org/files/ENCFF932MFT/@@download/ENCFF932MFT.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF396BFT bed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF182WFB, ENCFF319PHE, ENCFF681SBF 908048 ENCODE Processing Pipeline 2e441f80ffd810780ac7852981cec48f https://www.encodeproject.org/files/ENCFF396BFT/@@download/ENCFF396BFT.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF818XLK bed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182WFB, ENCFF319PHE, ENCFF681SBF, ENCFF871KGD 1283444 ENCODE Processing Pipeline 0abbbeb84dfd082b0388dd9ea1de270c https://www.encodeproject.org/files/ENCFF818XLK/@@download/ENCFF818XLK.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF247HRQ bigBed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396BFT 2288243 ENCODE Processing Pipeline b2a9bbc123cdd12ba2bd0f633b404eba https://www.encodeproject.org/files/ENCFF247HRQ/@@download/ENCFF247HRQ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF692ZZP bigBed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF932MFT 2424726 ENCODE Processing Pipeline 9662f818740079d785f1416da8de7019 https://www.encodeproject.org/files/ENCFF692ZZP/@@download/ENCFF692ZZP.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF119EXK bigBed narrowPeak peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF818XLK 3018813 ENCODE Processing Pipeline 13cde537beeeb5dc648f076bb21fc008 https://www.encodeproject.org/files/ENCFF119EXK/@@download/ENCFF119EXK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF194UEG bigWig signal p-value ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF182WFB, ENCFF319PHE, ENCFF681SBF 454414437 ENCODE Processing Pipeline b3743f0969f7575db21503ed014df89d https://www.encodeproject.org/files/ENCFF194UEG/@@download/ENCFF194UEG.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF876XHH bigWig signal p-value ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF871KGD 497985450 ENCODE Processing Pipeline fd160ab323207b9597fe011ee193b53c https://www.encodeproject.org/files/ENCFF876XHH/@@download/ENCFF876XHH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF835TGO bigWig signal p-value ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182WFB, ENCFF319PHE, ENCFF681SBF, ENCFF871KGD 681276742 ENCODE Processing Pipeline f494d2511a2673d3889735efb6e4c45a https://www.encodeproject.org/files/ENCFF835TGO/@@download/ENCFF835TGO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF998ZUI bigWig fold change over control ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF871KGD 457666706 ENCODE Processing Pipeline 040f9b88b58aa95ce0de30d5812fc7c9 https://www.encodeproject.org/files/ENCFF998ZUI/@@download/ENCFF998ZUI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF295KQR bigWig fold change over control ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF182WFB, ENCFF319PHE, ENCFF681SBF 439636045 ENCODE Processing Pipeline 135ca6f616dd2fcd1b3895a929f7d3de https://www.encodeproject.org/files/ENCFF295KQR/@@download/ENCFF295KQR.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF379BOF bigWig fold change over control ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182WFB, ENCFF319PHE, ENCFF681SBF, ENCFF871KGD 683354606 ENCODE Processing Pipeline 5b233e66faf0a5703a8590243b64a347 https://www.encodeproject.org/files/ENCFF379BOF/@@download/ENCFF379BOF.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF204YOB bed narrowPeak replicated peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF396BFT, ENCFF818XLK, ENCFF932MFT 626016 ENCODE Processing Pipeline 71c7770c49efdb684c3bf46c9141e489 https://www.encodeproject.org/files/ENCFF204YOB/@@download/ENCFF204YOB.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF290FXQ bigBed narrowPeak replicated peaks ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204YOB 1357036 ENCODE Processing Pipeline 87c5af2faff2c7b6b3cf1c9b240abf3f https://www.encodeproject.org/files/ENCFF290FXQ/@@download/ENCFF290FXQ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF002AGJ fastq reads ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1014788337 Bing Ren, UCSD ac2af2e8321270dddd204c510c526563 SRA:SRR3652993 https://www.encodeproject.org/files/ENCFF002AGJ/@@download/ENCFF002AGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQF/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AGK fastq reads ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1155946659 Bing Ren, UCSD 0292292c6219cdaec7664c09e2946e35 SRA:SRR3652992 https://www.encodeproject.org/files/ENCFF002AGK/@@download/ENCFF002AGK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF559YYQ bam alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGK, ENCFF806TVZ 916937950 ENCODE Processing Pipeline 95164bfe70c09a0dd40389ffb6d8a601 https://www.encodeproject.org/files/ENCFF559YYQ/@@download/ENCFF559YYQ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF466WCX fastq reads ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 433308399 Bing Ren, UCSD 9b84628055a7f516c789f2078d98506b SRA:SRR3652994 https://www.encodeproject.org/files/ENCFF466WCX/@@download/ENCFF466WCX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQF/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF958RRY bam alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGJ, ENCFF466WCX, ENCFF806TVZ 1190502923 ENCODE Processing Pipeline 578c67441f5c1633efae67209f713a42 https://www.encodeproject.org/files/ENCFF958RRY/@@download/ENCFF958RRY.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF746YUU bed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF559YYQ 599884 ENCODE Processing Pipeline d73ade2058718687619afd2e5800cfdd https://www.encodeproject.org/files/ENCFF746YUU/@@download/ENCFF746YUU.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF892MUW bed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF462HQE, ENCFF868CEP, ENCFF958RRY 684766 ENCODE Processing Pipeline d5cb685ce61b3a7ba50d0a86d682bcd1 https://www.encodeproject.org/files/ENCFF892MUW/@@download/ENCFF892MUW.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF259WMJ bigWig signal p-value ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462HQE, ENCFF559YYQ, ENCFF868CEP, ENCFF958RRY 684223884 ENCODE Processing Pipeline 19081a363459281078cba75ffa7e4273 https://www.encodeproject.org/files/ENCFF259WMJ/@@download/ENCFF259WMJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF375XCG bigBed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF892MUW 1574683 ENCODE Processing Pipeline 70310428e67dffd013f9a89059278e78 https://www.encodeproject.org/files/ENCFF375XCG/@@download/ENCFF375XCG.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF411QFO bigWig signal p-value ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF462HQE, ENCFF868CEP, ENCFF958RRY 492152992 ENCODE Processing Pipeline e7310bc13a3ba2af42813f3e08520e60 https://www.encodeproject.org/files/ENCFF411QFO/@@download/ENCFF411QFO.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF701FYU bed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462HQE, ENCFF559YYQ, ENCFF868CEP, ENCFF958RRY 790986 ENCODE Processing Pipeline 5c4c4cb61bfcd467e82c70246bfa15ad https://www.encodeproject.org/files/ENCFF701FYU/@@download/ENCFF701FYU.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF382KKU bigBed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF701FYU 1718409 ENCODE Processing Pipeline a5d4e946b3a739d56037f84d6a242717 https://www.encodeproject.org/files/ENCFF382KKU/@@download/ENCFF382KKU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF808JSH bed narrowPeak replicated peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF701FYU, ENCFF746YUU, ENCFF892MUW 311447 ENCODE Processing Pipeline a1ef432be24e43a67e4f179caa6b966c https://www.encodeproject.org/files/ENCFF808JSH/@@download/ENCFF808JSH.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF335YJN bigBed narrowPeak replicated peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF808JSH 795869 ENCODE Processing Pipeline 36677e7b381a09c9892e3e7798350866 https://www.encodeproject.org/files/ENCFF335YJN/@@download/ENCFF335YJN.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF998TYP bigWig fold change over control ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF462HQE, ENCFF868CEP, ENCFF958RRY 555687790 ENCODE Processing Pipeline ed4602043d00e345290b964f5db3126c https://www.encodeproject.org/files/ENCFF998TYP/@@download/ENCFF998TYP.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF884JJT bigWig fold change over control ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462HQE, ENCFF559YYQ, ENCFF868CEP, ENCFF958RRY 817813448 ENCODE Processing Pipeline cd6ca6af8fb82453ea00128cd9b7528f https://www.encodeproject.org/files/ENCFF884JJT/@@download/ENCFF884JJT.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF252CEV bam unfiltered alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGK, ENCFF018NEO 1280816612 ENCODE Processing Pipeline 141e5ffbb6adbd358632caca0fd9187e https://www.encodeproject.org/files/ENCFF252CEV/@@download/ENCFF252CEV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF289DEQ bam alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGK, ENCFF018NEO 916713506 ENCODE Processing Pipeline 0cd9c54c7650077c1b3310d7bb2b23f7 https://www.encodeproject.org/files/ENCFF289DEQ/@@download/ENCFF289DEQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF146NRN bam unfiltered alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGJ, ENCFF018NEO, ENCFF466WCX 1561087863 ENCODE Processing Pipeline 7f5782b3ad704edda853416b6b896d67 https://www.encodeproject.org/files/ENCFF146NRN/@@download/ENCFF146NRN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF087TDB bam alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGJ, ENCFF018NEO, ENCFF466WCX 1077406172 ENCODE Processing Pipeline 310166a56d40485a302d1a74c5dda667 https://www.encodeproject.org/files/ENCFF087TDB/@@download/ENCFF087TDB.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF130QND bed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF289DEQ, ENCFF598OHC 778054 ENCODE Processing Pipeline 7e28a659464a7d8a61b64ab28528514f https://www.encodeproject.org/files/ENCFF130QND/@@download/ENCFF130QND.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF403KOO bed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF087TDB, ENCFF383CGK, ENCFF598OHC 673203 ENCODE Processing Pipeline 89301cea6af5a9e387a16f7cf48e5d04 https://www.encodeproject.org/files/ENCFF403KOO/@@download/ENCFF403KOO.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF856XNJ bed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087TDB, ENCFF289DEQ, ENCFF383CGK, ENCFF598OHC 968740 ENCODE Processing Pipeline b25c2cc8c4f89201d6311c6d36f4de35 https://www.encodeproject.org/files/ENCFF856XNJ/@@download/ENCFF856XNJ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF486IOV bigBed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130QND 1787262 ENCODE Processing Pipeline 1666c46cb0e19d873824387d6a9e7edf https://www.encodeproject.org/files/ENCFF486IOV/@@download/ENCFF486IOV.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF748WBD bigBed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF403KOO 1574454 ENCODE Processing Pipeline 66321f772a0d2adfa25eacd5137cedf1 https://www.encodeproject.org/files/ENCFF748WBD/@@download/ENCFF748WBD.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF403OVE bigBed narrowPeak peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF856XNJ 2129787 ENCODE Processing Pipeline 7ef3299b70c3078b0471cef56242e093 https://www.encodeproject.org/files/ENCFF403OVE/@@download/ENCFF403OVE.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF931RRO bigWig signal p-value ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF087TDB, ENCFF383CGK, ENCFF598OHC 509535094 ENCODE Processing Pipeline a3fb74976987db5b0ddc08fa8be5e38a https://www.encodeproject.org/files/ENCFF931RRO/@@download/ENCFF931RRO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF916JJR bigWig signal p-value ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF289DEQ, ENCFF598OHC 337987338 ENCODE Processing Pipeline 93f3737b75a16ead92b0c3128f832182 https://www.encodeproject.org/files/ENCFF916JJR/@@download/ENCFF916JJR.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF499JUP bigWig signal p-value ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087TDB, ENCFF289DEQ, ENCFF383CGK, ENCFF598OHC 916601307 ENCODE Processing Pipeline fcee3d43f98c79454103b4cb70c03ecb https://www.encodeproject.org/files/ENCFF499JUP/@@download/ENCFF499JUP.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF953ZJU bigWig fold change over control ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF289DEQ, ENCFF598OHC 421688879 ENCODE Processing Pipeline 847d554accda45b4a8c2ec3d509d3a1c https://www.encodeproject.org/files/ENCFF953ZJU/@@download/ENCFF953ZJU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF526RIB bigWig fold change over control ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF087TDB, ENCFF383CGK, ENCFF598OHC 614502371 ENCODE Processing Pipeline fd11cff93c34790794b1cfcd1163b8e0 https://www.encodeproject.org/files/ENCFF526RIB/@@download/ENCFF526RIB.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF014HTI bigWig fold change over control ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087TDB, ENCFF289DEQ, ENCFF383CGK, ENCFF598OHC 888075533 ENCODE Processing Pipeline 576ed4c25e4297ce3d17c2a9b453255e https://www.encodeproject.org/files/ENCFF014HTI/@@download/ENCFF014HTI.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF320QNM bed narrowPeak replicated peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130QND, ENCFF403KOO, ENCFF856XNJ 328501 ENCODE Processing Pipeline 372184db567bc305a18316e251c962e0 https://www.encodeproject.org/files/ENCFF320QNM/@@download/ENCFF320QNM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF696XNZ bigBed narrowPeak replicated peaks ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF320QNM 827564 ENCODE Processing Pipeline ccc3bd843a8ac3f50cd89f6bb6e79402 https://www.encodeproject.org/files/ENCFF696XNZ/@@download/ENCFF696XNZ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF082LJL fastq reads ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2938223436 Bing Ren, UCSD 7f6d860ca3f6a008cde7ad2b215a3e17 SRA:SRR3651202 https://www.encodeproject.org/files/ENCFF082LJL/@@download/ENCFF082LJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released mild to moderate bottlenecking, inconsistent platforms ENCFF212KTV fastq reads ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2211002389 Bing Ren, UCSD e248afd359548fba26791a92e42c26d1 SRA:SRR3651201 https://www.encodeproject.org/files/ENCFF212KTV/@@download/ENCFF212KTV.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released mild to moderate bottlenecking, inconsistent platforms ENCFF419KCB bam alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082LJL, ENCFF806TVZ 1991308645 ENCODE Processing Pipeline fbb9f5a4cb3c5fc98fa649c4e5da96e1 https://www.encodeproject.org/files/ENCFF419KCB/@@download/ENCFF419KCB.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF543HMZ bam alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF212KTV, ENCFF806TVZ 1521351650 ENCODE Processing Pipeline 4e54fab5624bd00671241a2eeef3012d https://www.encodeproject.org/files/ENCFF543HMZ/@@download/ENCFF543HMZ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF777XIC bigBed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF170VIY 1778617 ENCODE Processing Pipeline 8f61c7d3cc0e5691c02fe63b40ec1ebc https://www.encodeproject.org/files/ENCFF777XIC/@@download/ENCFF777XIC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF247VMW bed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF419KCB, ENCFF792GEI 586102 ENCODE Processing Pipeline b12d2f60d370d98d66a4dcfd0ec047f5 https://www.encodeproject.org/files/ENCFF247VMW/@@download/ENCFF247VMW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF816LRS bigBed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF247VMW 1805526 ENCODE Processing Pipeline d69d83c1df595f91dc3b1d50555c51f7 https://www.encodeproject.org/files/ENCFF816LRS/@@download/ENCFF816LRS.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF364WWT bigWig signal p-value ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF419KCB, ENCFF792GEI 824095589 ENCODE Processing Pipeline 767528edefc6d0c3139b413aeb170602 https://www.encodeproject.org/files/ENCFF364WWT/@@download/ENCFF364WWT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF503QIE bigWig signal p-value ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF419KCB, ENCFF543HMZ, ENCFF792GEI 1102094320 ENCODE Processing Pipeline ce4894171485baf127dfbcab736158e2 https://www.encodeproject.org/files/ENCFF503QIE/@@download/ENCFF503QIE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF170VIY bed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF543HMZ, ENCFF792GEI 572070 ENCODE Processing Pipeline c938272f97e0476001571c1b75dc6868 https://www.encodeproject.org/files/ENCFF170VIY/@@download/ENCFF170VIY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF291REC bed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF419KCB, ENCFF543HMZ, ENCFF792GEI 638595 ENCODE Processing Pipeline cab667055590c9882776bec6519adfc8 https://www.encodeproject.org/files/ENCFF291REC/@@download/ENCFF291REC.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF445XVT bigWig fold change over control ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF419KCB, ENCFF543HMZ, ENCFF792GEI 1185832424 ENCODE Processing Pipeline 8e20cda28ed9bf6d46f73903960a0f9e https://www.encodeproject.org/files/ENCFF445XVT/@@download/ENCFF445XVT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF567ALE bigWig signal p-value ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF543HMZ, ENCFF792GEI 871875449 ENCODE Processing Pipeline 7c8689b1175b3618972a0239e8555bfa https://www.encodeproject.org/files/ENCFF567ALE/@@download/ENCFF567ALE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF025NRZ bigWig fold change over control ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF543HMZ, ENCFF792GEI 715188743 ENCODE Processing Pipeline 7b691530e80ccbf6e59895eacb59f231 https://www.encodeproject.org/files/ENCFF025NRZ/@@download/ENCFF025NRZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF891EXN bigWig fold change over control ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF419KCB, ENCFF792GEI 876791026 ENCODE Processing Pipeline d6989b2dabbc1249f78b4ebf519ab351 https://www.encodeproject.org/files/ENCFF891EXN/@@download/ENCFF891EXN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF493JBE bed narrowPeak replicated peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF170VIY, ENCFF247VMW, ENCFF291REC 717892 ENCODE Processing Pipeline b18fa53abf2dbe011c265daab1f3a2b4 https://www.encodeproject.org/files/ENCFF493JBE/@@download/ENCFF493JBE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF138BVZ bigBed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF291REC 1869843 ENCODE Processing Pipeline 60d620f36e3ae4cb1a7778a5b9dfbe8a https://www.encodeproject.org/files/ENCFF138BVZ/@@download/ENCFF138BVZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF817GVB bigBed narrowPeak replicated peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF493JBE 1646296 ENCODE Processing Pipeline e30a2b9c3d92eb240792a5867e94ec8b https://www.encodeproject.org/files/ENCFF817GVB/@@download/ENCFF817GVB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF464OCY bam unfiltered alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF082LJL 3227868920 ENCODE Processing Pipeline bff6adf2007c5a30ec9dbd623dc7485c https://www.encodeproject.org/files/ENCFF464OCY/@@download/ENCFF464OCY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF971GML bam unfiltered alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF212KTV 2428933638 ENCODE Processing Pipeline ee1ef523576362aeb7a28f778e3d90ee https://www.encodeproject.org/files/ENCFF971GML/@@download/ENCFF971GML.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF755BPV bam alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF082LJL 1991030784 ENCODE Processing Pipeline c53642feaca0cd90e4c495f278c004a8 https://www.encodeproject.org/files/ENCFF755BPV/@@download/ENCFF755BPV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF911RYA bam alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF212KTV 1521149314 ENCODE Processing Pipeline e673ef246a171ff98d4718ab7b2dc550 https://www.encodeproject.org/files/ENCFF911RYA/@@download/ENCFF911RYA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF950EHO bed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF755BPV, ENCFF880SQD, ENCFF901RYX, ENCFF911RYA 646342 ENCODE Processing Pipeline bb7ae0758e723edabd8ba29797fe62fb https://www.encodeproject.org/files/ENCFF950EHO/@@download/ENCFF950EHO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF645OLS bed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF901RYX, ENCFF911RYA 563271 ENCODE Processing Pipeline ee28657accdd0f77d7b937cb94d9a3ca https://www.encodeproject.org/files/ENCFF645OLS/@@download/ENCFF645OLS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF354CGK bed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF755BPV, ENCFF880SQD 571590 ENCODE Processing Pipeline 9143d76c0d13538864cb0cf3d857f03e https://www.encodeproject.org/files/ENCFF354CGK/@@download/ENCFF354CGK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF269SBL bigBed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF354CGK 1810479 ENCODE Processing Pipeline 95f7da5e749455672cdc9e0a197b2889 https://www.encodeproject.org/files/ENCFF269SBL/@@download/ENCFF269SBL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF403YWB bigBed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF645OLS 1789477 ENCODE Processing Pipeline cb317f5dca7ff788133801947954fba0 https://www.encodeproject.org/files/ENCFF403YWB/@@download/ENCFF403YWB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF089EKB bigBed narrowPeak peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF950EHO 1877784 ENCODE Processing Pipeline f88a27221f3883e4427e13bd9b1a0dcc https://www.encodeproject.org/files/ENCFF089EKB/@@download/ENCFF089EKB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF572CPQ bigWig signal p-value ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF901RYX, ENCFF911RYA 529586046 ENCODE Processing Pipeline 705d0a59a579d55b0572c13bd3957ed6 https://www.encodeproject.org/files/ENCFF572CPQ/@@download/ENCFF572CPQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF828UEO bigWig signal p-value ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF755BPV, ENCFF880SQD 690579325 ENCODE Processing Pipeline 1a48a7a64c1c9f5f265965d7e619e7d8 https://www.encodeproject.org/files/ENCFF828UEO/@@download/ENCFF828UEO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF265NNV bigWig signal p-value ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF755BPV, ENCFF880SQD, ENCFF901RYX, ENCFF911RYA 1024045752 ENCODE Processing Pipeline ae9a41e88efd5cf5fb4d4b5848c733bd https://www.encodeproject.org/files/ENCFF265NNV/@@download/ENCFF265NNV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF157DMO bigWig fold change over control ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF901RYX, ENCFF911RYA 567338936 ENCODE Processing Pipeline a4182d3a1580dccfb63a5af4b249ab92 https://www.encodeproject.org/files/ENCFF157DMO/@@download/ENCFF157DMO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF697SWF bigWig fold change over control ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF755BPV, ENCFF880SQD 677292920 ENCODE Processing Pipeline 938ae44b3efe678725b811fe30d9b092 https://www.encodeproject.org/files/ENCFF697SWF/@@download/ENCFF697SWF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF469CPH bigWig fold change over control ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF755BPV, ENCFF880SQD, ENCFF901RYX, ENCFF911RYA 1243147147 ENCODE Processing Pipeline 3d0570093458f4fb256088008239f29b https://www.encodeproject.org/files/ENCFF469CPH/@@download/ENCFF469CPH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF615CBT bed narrowPeak replicated peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF354CGK, ENCFF645OLS, ENCFF950EHO 713454 ENCODE Processing Pipeline 9c30edb57900fd241a06a49ecd43f69c https://www.encodeproject.org/files/ENCFF615CBT/@@download/ENCFF615CBT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF473IWR bigBed narrowPeak replicated peaks ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF615CBT 1637336 ENCODE Processing Pipeline 7d7cccad9e851f162e0a8c1b14527e76 https://www.encodeproject.org/files/ENCFF473IWR/@@download/ENCFF473IWR.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF874ADM fastq reads ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2644601901 Bing Ren, UCSD 8e051c204df6d3349858e1bb99dfa5d6 SRA:SRR3651490 https://www.encodeproject.org/files/ENCFF874ADM/@@download/ENCFF874ADM.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released mild to moderate bottlenecking, moderate library complexity ENCFF105XGM fastq reads ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2413859863 Bing Ren, UCSD b89293c59e5cca7db330a23b11822c22 SRA:SRR3651489 https://www.encodeproject.org/files/ENCFF105XGM/@@download/ENCFF105XGM.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released mild to moderate bottlenecking, moderate library complexity ENCFF368LAT bam alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF105XGM, ENCFF806TVZ 1673584032 ENCODE Processing Pipeline 1f3dd17d8b1237af02eca45dfd2f9091 https://www.encodeproject.org/files/ENCFF368LAT/@@download/ENCFF368LAT.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF711UCP bam alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF874ADM 1556782641 ENCODE Processing Pipeline 094a30d74498c931f611c3a19f599ade https://www.encodeproject.org/files/ENCFF711UCP/@@download/ENCFF711UCP.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF313ZQZ bed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF368LAT 907948 ENCODE Processing Pipeline eb196e43b8bc35d5201cd79c0fad328d https://www.encodeproject.org/files/ENCFF313ZQZ/@@download/ENCFF313ZQZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF042SDM bed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF711UCP 1509918 ENCODE Processing Pipeline a3c32aee9a87b7f3e9a81e0625630029 https://www.encodeproject.org/files/ENCFF042SDM/@@download/ENCFF042SDM.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF517NCY bed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF368LAT, ENCFF711UCP 1751185 ENCODE Processing Pipeline 6763ebcf76571fbd760359703421a785 https://www.encodeproject.org/files/ENCFF517NCY/@@download/ENCFF517NCY.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF573TBO bigBed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF313ZQZ 1927236 ENCODE Processing Pipeline c9d20ac3dc307563df3d684a0ff36243 https://www.encodeproject.org/files/ENCFF573TBO/@@download/ENCFF573TBO.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF170SQO bigBed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF517NCY 4143231 ENCODE Processing Pipeline 49a66797963c7c3eaeaca2219db614a6 https://www.encodeproject.org/files/ENCFF170SQO/@@download/ENCFF170SQO.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF944FYI bigBed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF042SDM 2894252 ENCODE Processing Pipeline b15022184ad87cf79a5e546aad2b4e4a https://www.encodeproject.org/files/ENCFF944FYI/@@download/ENCFF944FYI.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF588IJJ bigWig signal p-value ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF368LAT 814010644 ENCODE Processing Pipeline bb0b9825ed0cceede87a0faf4330c420 https://www.encodeproject.org/files/ENCFF588IJJ/@@download/ENCFF588IJJ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF681EUJ bigWig signal p-value ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF711UCP 657154201 ENCODE Processing Pipeline a4be7e9382c2070c55115098c1bd64f6 https://www.encodeproject.org/files/ENCFF681EUJ/@@download/ENCFF681EUJ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF168AOQ bigWig signal p-value ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF368LAT, ENCFF711UCP 1362386388 ENCODE Processing Pipeline 66ff6ae4757b40725cf4f3b88e468ce9 https://www.encodeproject.org/files/ENCFF168AOQ/@@download/ENCFF168AOQ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF561EFT bigWig fold change over control ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF368LAT 809194096 ENCODE Processing Pipeline e703e2709cebbb5d11c504e0259ed7d5 https://www.encodeproject.org/files/ENCFF561EFT/@@download/ENCFF561EFT.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF088SLL bigWig fold change over control ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF711UCP 743111130 ENCODE Processing Pipeline 42abb49fbda886c52d96023fa8b6ab4d https://www.encodeproject.org/files/ENCFF088SLL/@@download/ENCFF088SLL.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF779JLT bed narrowPeak replicated peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF042SDM, ENCFF313ZQZ, ENCFF517NCY 535419 ENCODE Processing Pipeline 3359d417e342c1cf8a6c1155788c6ceb https://www.encodeproject.org/files/ENCFF779JLT/@@download/ENCFF779JLT.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF713VCL bigWig fold change over control ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF368LAT, ENCFF711UCP 1486053261 ENCODE Processing Pipeline 75a2ef820fdb465eb71a47f94c8e244a https://www.encodeproject.org/files/ENCFF713VCL/@@download/ENCFF713VCL.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF131UXM bigBed narrowPeak replicated peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF779JLT 1315495 ENCODE Processing Pipeline f71d6d54a6846d7df87a41f67051b071 https://www.encodeproject.org/files/ENCFF131UXM/@@download/ENCFF131UXM.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF516VSR bam unfiltered alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF874ADM 3460580588 ENCODE Processing Pipeline edb61e982bd9f3009080c7d294dd0d95 https://www.encodeproject.org/files/ENCFF516VSR/@@download/ENCFF516VSR.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF996NRE bam unfiltered alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF105XGM 3228211426 ENCODE Processing Pipeline 15694189c93e0bb957ed2a087a77beab https://www.encodeproject.org/files/ENCFF996NRE/@@download/ENCFF996NRE.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF293UCG bam alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF105XGM 1673024518 ENCODE Processing Pipeline 4c49080c1e15225fdaa1acf446d27010 https://www.encodeproject.org/files/ENCFF293UCG/@@download/ENCFF293UCG.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF777XFH bam alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF874ADM 1556260150 ENCODE Processing Pipeline b9871d2d425c57a6d2c23253c8eaa117 https://www.encodeproject.org/files/ENCFF777XFH/@@download/ENCFF777XFH.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF759HBZ bigBed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF677CLA 1793365 ENCODE Processing Pipeline 8acbeae8181620330b5f21f21e8d7045 https://www.encodeproject.org/files/ENCFF759HBZ/@@download/ENCFF759HBZ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF555LBI bigWig signal p-value ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF293UCG, ENCFF865QGZ 666461112 ENCODE Processing Pipeline df73571ebd2277ac74fd66d80bb6003b https://www.encodeproject.org/files/ENCFF555LBI/@@download/ENCFF555LBI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF677CLA bed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF293UCG, ENCFF865QGZ 815136 ENCODE Processing Pipeline 4fd8112e81ffa1eed6e127c93db5bf5a https://www.encodeproject.org/files/ENCFF677CLA/@@download/ENCFF677CLA.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF916GOB bigBed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF163HHL 2900427 ENCODE Processing Pipeline 33360045c62510f6ffacf90f691ab939 https://www.encodeproject.org/files/ENCFF916GOB/@@download/ENCFF916GOB.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF163HHL bed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF777XFH 1512536 ENCODE Processing Pipeline 33fee32d4cfb7074bc559624beff7aab https://www.encodeproject.org/files/ENCFF163HHL/@@download/ENCFF163HHL.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF224LRL bigBed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF634ELU 4538668 ENCODE Processing Pipeline 25710f1695ccacee9cd42b9bd46d3bc6 https://www.encodeproject.org/files/ENCFF224LRL/@@download/ENCFF224LRL.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF634ELU bed narrowPeak peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF293UCG, ENCFF438RYK, ENCFF777XFH, ENCFF865QGZ 1951177 ENCODE Processing Pipeline 0f857ce57b0d06b75c6163655fd32d15 https://www.encodeproject.org/files/ENCFF634ELU/@@download/ENCFF634ELU.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF929GKM bigWig signal p-value ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF777XFH 718971120 ENCODE Processing Pipeline 272b30a711c1b03d7d699582e0b4fc7c https://www.encodeproject.org/files/ENCFF929GKM/@@download/ENCFF929GKM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF272UVM bigWig signal p-value ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF293UCG, ENCFF438RYK, ENCFF777XFH, ENCFF865QGZ 1170223464 ENCODE Processing Pipeline 26af4e30af0ade168aaf2acdd8bf9c4f https://www.encodeproject.org/files/ENCFF272UVM/@@download/ENCFF272UVM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF125PPX bigWig fold change over control ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF293UCG, ENCFF865QGZ 848558935 ENCODE Processing Pipeline dbc447be52698e876ddd221586ba867d https://www.encodeproject.org/files/ENCFF125PPX/@@download/ENCFF125PPX.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF719GNE bigWig fold change over control ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF777XFH 741063716 ENCODE Processing Pipeline 750ceca78aaacf616cf72ea3c84c151a https://www.encodeproject.org/files/ENCFF719GNE/@@download/ENCFF719GNE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF741LSB bigWig fold change over control ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF293UCG, ENCFF438RYK, ENCFF777XFH, ENCFF865QGZ 1520639581 ENCODE Processing Pipeline 5a7c5044d5d0b39b2e1241ea37583608 https://www.encodeproject.org/files/ENCFF741LSB/@@download/ENCFF741LSB.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF967VTA bigBed narrowPeak replicated peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF646CRN 1307034 ENCODE Processing Pipeline 7ddc66db86d05d020cd42d671af959c0 https://www.encodeproject.org/files/ENCFF967VTA/@@download/ENCFF967VTA.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF646CRN bed narrowPeak replicated peaks ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF163HHL, ENCFF634ELU, ENCFF677CLA 535859 ENCODE Processing Pipeline 1d5fd198b144073f877c40cde9b0ab2c https://www.encodeproject.org/files/ENCFF646CRN/@@download/ENCFF646CRN.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF002BXK fastq reads ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1315580945 Bing Ren, UCSD 4449cc4d0e65face1443cb16c34ee466 SRA:SRR3652768 https://www.encodeproject.org/files/ENCFF002BXK/@@download/ENCFF002BXK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYB/ released low read length ENCFF002BXJ fastq reads ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1399062373 Bing Ren, UCSD fe237416cadd2ce4cdf667ad8bf45453 SRA:SRR3652769 https://www.encodeproject.org/files/ENCFF002BXJ/@@download/ENCFF002BXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYC/ released low read length ENCFF953DRQ bam alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXJ, ENCFF806TVZ 1070866909 ENCODE Processing Pipeline 7e533efb6b8cc632f265ff5ec04653a9 https://www.encodeproject.org/files/ENCFF953DRQ/@@download/ENCFF953DRQ.bam mm10-minimal archived low read length ENCFF277VYQ bam alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXK, ENCFF806TVZ 1026405677 ENCODE Processing Pipeline e8a825af1a31ab9dba6dbe90e7ecca42 https://www.encodeproject.org/files/ENCFF277VYQ/@@download/ENCFF277VYQ.bam mm10-minimal archived low read length ENCFF832SSJ bigBed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF189APY 2012242 ENCODE Processing Pipeline 7ea5b5b409fc2231928b8e4984b73ddc https://www.encodeproject.org/files/ENCFF832SSJ/@@download/ENCFF832SSJ.bigBed mm10-minimal archived low read length ENCFF401NVT bed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF277VYQ, ENCFF783YRC 616258 ENCODE Processing Pipeline 3ec5f346731671bcae4c68cb72f85e8c https://www.encodeproject.org/files/ENCFF401NVT/@@download/ENCFF401NVT.bed.gz mm10-minimal archived low read length ENCFF623UBG bed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF277VYQ, ENCFF783YRC, ENCFF953DRQ 671889 ENCODE Processing Pipeline 08b342d90e042b4f2c193b0a83129bca https://www.encodeproject.org/files/ENCFF623UBG/@@download/ENCFF623UBG.bed.gz mm10-minimal archived low read length ENCFF189APY bed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF783YRC, ENCFF953DRQ 644021 ENCODE Processing Pipeline ed00ffdf8c8ecd7b1910f906d9b3b503 https://www.encodeproject.org/files/ENCFF189APY/@@download/ENCFF189APY.bed.gz mm10-minimal archived low read length ENCFF211EPN bigBed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF623UBG 2038933 ENCODE Processing Pipeline ef3f905d4b72f4842b96db4886f3d8e0 https://www.encodeproject.org/files/ENCFF211EPN/@@download/ENCFF211EPN.bigBed mm10-minimal archived low read length ENCFF074FDK bigBed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF401NVT 1938164 ENCODE Processing Pipeline b7ef21413c882ba177771a50bd605b14 https://www.encodeproject.org/files/ENCFF074FDK/@@download/ENCFF074FDK.bigBed mm10-minimal archived low read length ENCFF268FEQ bigWig signal p-value ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF277VYQ, ENCFF783YRC, ENCFF953DRQ 782559850 ENCODE Processing Pipeline 843c6b2df0ee256ce2f7958c6a4cc831 https://www.encodeproject.org/files/ENCFF268FEQ/@@download/ENCFF268FEQ.bigWig mm10-minimal archived low read length ENCFF456QUM bigWig signal p-value ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF277VYQ, ENCFF783YRC 520606273 ENCODE Processing Pipeline 1ece749e3e1b47e6d3773f2efb30a365 https://www.encodeproject.org/files/ENCFF456QUM/@@download/ENCFF456QUM.bigWig mm10-minimal archived low read length ENCFF153WYR bigWig signal p-value ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF783YRC, ENCFF953DRQ 579642652 ENCODE Processing Pipeline 596a2088e6b01cad4b1d368c399820a7 https://www.encodeproject.org/files/ENCFF153WYR/@@download/ENCFF153WYR.bigWig mm10-minimal archived low read length ENCFF892YBO bigWig fold change over control ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF277VYQ, ENCFF783YRC 516922937 ENCODE Processing Pipeline 715ebc9d51cf73e0a2c347ef50e8b162 https://www.encodeproject.org/files/ENCFF892YBO/@@download/ENCFF892YBO.bigWig mm10-minimal archived low read length ENCFF640BJF bigWig fold change over control ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF783YRC, ENCFF953DRQ 516157725 ENCODE Processing Pipeline 7254de811c713f6cc5274d81047dd069 https://www.encodeproject.org/files/ENCFF640BJF/@@download/ENCFF640BJF.bigWig mm10-minimal archived low read length ENCFF530CEC bigWig fold change over control ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF277VYQ, ENCFF783YRC, ENCFF953DRQ 776646937 ENCODE Processing Pipeline 25ef9a69eb07f8d3620febfb21bdaa0a https://www.encodeproject.org/files/ENCFF530CEC/@@download/ENCFF530CEC.bigWig mm10-minimal archived low read length ENCFF904VNN bed narrowPeak replicated peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF189APY, ENCFF401NVT, ENCFF623UBG 767032 ENCODE Processing Pipeline e5a6f91d76a9d28ff39b503a747a9ad3 https://www.encodeproject.org/files/ENCFF904VNN/@@download/ENCFF904VNN.bed.gz mm10-minimal archived low read length ENCFF249JWX bigBed narrowPeak replicated peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF904VNN 1760365 ENCODE Processing Pipeline 578c11ec4bfd6400471400fb3cfe7ef1 https://www.encodeproject.org/files/ENCFF249JWX/@@download/ENCFF249JWX.bigBed mm10-minimal archived low read length ENCFF733WVH bam unfiltered alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXK, ENCFF018NEO 1586853460 ENCODE Processing Pipeline 17fe3c4a00853d6019e564c24d875ee6 https://www.encodeproject.org/files/ENCFF733WVH/@@download/ENCFF733WVH.bam mm10 released low read length ENCFF062PXX bam unfiltered alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXJ, ENCFF018NEO 1669975593 ENCODE Processing Pipeline 44d69f8114e67a0643daf24263d2ad2c https://www.encodeproject.org/files/ENCFF062PXX/@@download/ENCFF062PXX.bam mm10 released low read length ENCFF663HQH bam alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXK, ENCFF018NEO 1026239380 ENCODE Processing Pipeline 46120b51db9401b49fbc8bcde893383b https://www.encodeproject.org/files/ENCFF663HQH/@@download/ENCFF663HQH.bam mm10 released low read length ENCFF447GAC bam alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXJ, ENCFF018NEO 1070710446 ENCODE Processing Pipeline 7ebb1506aea29f7ddfe4d0677fd67316 https://www.encodeproject.org/files/ENCFF447GAC/@@download/ENCFF447GAC.bam mm10 released low read length ENCFF386VAP bed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF663HQH 616740 ENCODE Processing Pipeline 5f57a14214ff8c4c2c3f4298d77c432d https://www.encodeproject.org/files/ENCFF386VAP/@@download/ENCFF386VAP.bed.gz mm10 released low read length ENCFF959CBE bed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF447GAC 591436 ENCODE Processing Pipeline 3d483bb06967a3da9d9cd27d5471910c https://www.encodeproject.org/files/ENCFF959CBE/@@download/ENCFF959CBE.bed.gz mm10 released low read length ENCFF533YRG bed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF447GAC, ENCFF658UBJ, ENCFF663HQH 672333 ENCODE Processing Pipeline eb8898d9594d2018548de3c03f47b015 https://www.encodeproject.org/files/ENCFF533YRG/@@download/ENCFF533YRG.bed.gz mm10 released low read length ENCFF860HLU bigBed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF386VAP 1940060 ENCODE Processing Pipeline 899d8f50aabac44e9846bd5e6c9549c0 https://www.encodeproject.org/files/ENCFF860HLU/@@download/ENCFF860HLU.bigBed mm10 released low read length ENCFF287QKT bigBed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF959CBE 1902321 ENCODE Processing Pipeline 65a29582082ca1dc053e6290b79c7769 https://www.encodeproject.org/files/ENCFF287QKT/@@download/ENCFF287QKT.bigBed mm10 released low read length ENCFF708UMT bigBed narrowPeak peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF533YRG 2040968 ENCODE Processing Pipeline 244b5bfbefe5926aa16b2154dbdd5a1e https://www.encodeproject.org/files/ENCFF708UMT/@@download/ENCFF708UMT.bigBed mm10 released low read length ENCFF968JLB bigWig signal p-value ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF663HQH 574417281 ENCODE Processing Pipeline e4eec10adc8cb4676dbcc827f81ce003 https://www.encodeproject.org/files/ENCFF968JLB/@@download/ENCFF968JLB.bigWig mm10 released low read length ENCFF554RQC bigWig signal p-value ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF447GAC 420091934 ENCODE Processing Pipeline 6ca99598446a96025801f9a74d929b17 https://www.encodeproject.org/files/ENCFF554RQC/@@download/ENCFF554RQC.bigWig mm10 released low read length ENCFF283OBS bigWig signal p-value ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF447GAC, ENCFF658UBJ, ENCFF663HQH 782651416 ENCODE Processing Pipeline b479578c444ff2ebf0d1d4b002d376a0 https://www.encodeproject.org/files/ENCFF283OBS/@@download/ENCFF283OBS.bigWig mm10 released low read length ENCFF586RDI bigWig fold change over control ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF663HQH 516208061 ENCODE Processing Pipeline b0ef4b51c9b4bb39168784a9972560a1 https://www.encodeproject.org/files/ENCFF586RDI/@@download/ENCFF586RDI.bigWig mm10 released low read length ENCFF954SSL bigWig fold change over control ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF447GAC 395916277 ENCODE Processing Pipeline f2c1a32a5c8d5b49f4090fec5b00c01b https://www.encodeproject.org/files/ENCFF954SSL/@@download/ENCFF954SSL.bigWig mm10 released low read length ENCFF309WXH bigWig fold change over control ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF447GAC, ENCFF658UBJ, ENCFF663HQH 779543534 ENCODE Processing Pipeline 72be68012d63b4c52efc40a32ed4c945 https://www.encodeproject.org/files/ENCFF309WXH/@@download/ENCFF309WXH.bigWig mm10 released low read length ENCFF569KWB bed narrowPeak replicated peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF386VAP, ENCFF533YRG, ENCFF959CBE 765107 ENCODE Processing Pipeline 6619ee8816db387622b1805ec3171794 https://www.encodeproject.org/files/ENCFF569KWB/@@download/ENCFF569KWB.bed.gz mm10 released low read length ENCFF849FYX bigBed narrowPeak replicated peaks ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF569KWB 1759327 ENCODE Processing Pipeline 2840f571e7d0bd61dd18e1a18cb273be https://www.encodeproject.org/files/ENCFF849FYX/@@download/ENCFF849FYX.bigBed mm10 released low read length ENCFF002BWI fastq reads ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1540192935 Bing Ren, UCSD 9feee8d00b4921b48f35bdbc53f851f1 SRA:SRR3652596 https://www.encodeproject.org/files/ENCFF002BWI/@@download/ENCFF002BWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXT/ released low read length, mild to moderate bottlenecking ENCFF002BWG fastq reads ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1374908320 Bing Ren, UCSD 505e0e8a203bcfd1f90203021334044b SRA:SRR3652595 https://www.encodeproject.org/files/ENCFF002BWG/@@download/ENCFF002BWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXR/ released low read length, mild to moderate bottlenecking ENCFF886ZQC bam alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWI, ENCFF806TVZ 1222649733 ENCODE Processing Pipeline f92e42cea082e7409ad6a110019ab9d9 https://www.encodeproject.org/files/ENCFF886ZQC/@@download/ENCFF886ZQC.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF874ZDU bam alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWG, ENCFF806TVZ 1125961898 ENCODE Processing Pipeline 762d03b67d371e8bcd61a6c813ae537a https://www.encodeproject.org/files/ENCFF874ZDU/@@download/ENCFF874ZDU.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF746OXA bigBed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF232RSQ 4729159 ENCODE Processing Pipeline 30618bbe7ae752f86855e2ce43026d93 https://www.encodeproject.org/files/ENCFF746OXA/@@download/ENCFF746OXA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF372EBI bed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF720BSQ, ENCFF874ZDU 1653398 ENCODE Processing Pipeline 68e40b5c84bb991574f9160b9e33b6dd https://www.encodeproject.org/files/ENCFF372EBI/@@download/ENCFF372EBI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF232RSQ bed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF874ZDU, ENCFF886ZQC 1687923 ENCODE Processing Pipeline ebfb4c6c2f511bda1efee38cbde12faf https://www.encodeproject.org/files/ENCFF232RSQ/@@download/ENCFF232RSQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF829GTJ bed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF886ZQC 1600386 ENCODE Processing Pipeline e480a55392182316e40f2d28c8a9a587 https://www.encodeproject.org/files/ENCFF829GTJ/@@download/ENCFF829GTJ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF339MCM bigBed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF372EBI 4754611 ENCODE Processing Pipeline 4860fa36c877bc279844a8d018aff91c https://www.encodeproject.org/files/ENCFF339MCM/@@download/ENCFF339MCM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF363ANN bigBed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF829GTJ 4546348 ENCODE Processing Pipeline 1c83ebdfb551d397acce9dbf0b8a1608 https://www.encodeproject.org/files/ENCFF363ANN/@@download/ENCFF363ANN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF662EOJ bigWig fold change over control ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF720BSQ, ENCFF874ZDU 578652324 ENCODE Processing Pipeline 18df6d214363ff9c5ddb90e1cf1e8553 https://www.encodeproject.org/files/ENCFF662EOJ/@@download/ENCFF662EOJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF754RRM bigWig signal p-value ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF720BSQ, ENCFF874ZDU 499570056 ENCODE Processing Pipeline 20f02ca7e683da1da486ed4fb3153b59 https://www.encodeproject.org/files/ENCFF754RRM/@@download/ENCFF754RRM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF299QBW bigWig signal p-value ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF886ZQC 607235712 ENCODE Processing Pipeline 372b234c6334bbd5e1072f40536e7f5e https://www.encodeproject.org/files/ENCFF299QBW/@@download/ENCFF299QBW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF934BCK bigWig signal p-value ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF874ZDU, ENCFF886ZQC 916436577 ENCODE Processing Pipeline 0df5afd8f19338816e738e472e12da2c https://www.encodeproject.org/files/ENCFF934BCK/@@download/ENCFF934BCK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF411ELT bigWig fold change over control ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF886ZQC 611477038 ENCODE Processing Pipeline b9885eeec372dde4ccb9128961fefc56 https://www.encodeproject.org/files/ENCFF411ELT/@@download/ENCFF411ELT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF219XUF bigWig fold change over control ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF874ZDU, ENCFF886ZQC 940361782 ENCODE Processing Pipeline e437c68bb891ca55f7aab3dd48e74d37 https://www.encodeproject.org/files/ENCFF219XUF/@@download/ENCFF219XUF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF619MOV bed narrowPeak replicated peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF232RSQ, ENCFF372EBI, ENCFF829GTJ 1651022 ENCODE Processing Pipeline e7a84db9bda8221fcd2aa79de6729113 https://www.encodeproject.org/files/ENCFF619MOV/@@download/ENCFF619MOV.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF650UMT bigBed narrowPeak replicated peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF619MOV 3469854 ENCODE Processing Pipeline a4173e03d71dc31ffc6e2af8ff37c468 https://www.encodeproject.org/files/ENCFF650UMT/@@download/ENCFF650UMT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF780XOV bam unfiltered alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWI, ENCFF018NEO 1946229432 ENCODE Processing Pipeline c33719325ab6bd93e4e872ab7bb10580 https://www.encodeproject.org/files/ENCFF780XOV/@@download/ENCFF780XOV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF073QXO bam unfiltered alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWG, ENCFF018NEO 1748909261 ENCODE Processing Pipeline f02b7b49cd9172a3bd2848d6ab6b0582 https://www.encodeproject.org/files/ENCFF073QXO/@@download/ENCFF073QXO.bam mm10 released low read length, mild to moderate bottlenecking ENCFF911DLL bam alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWG, ENCFF018NEO 1125670200 ENCODE Processing Pipeline 6b23d06e8b23eb5d305ce31a9086c274 https://www.encodeproject.org/files/ENCFF911DLL/@@download/ENCFF911DLL.bam mm10 released low read length, mild to moderate bottlenecking ENCFF649BJN bam alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWI, ENCFF018NEO 1222357315 ENCODE Processing Pipeline 633e3bc01077d05de15d429514e275e1 https://www.encodeproject.org/files/ENCFF649BJN/@@download/ENCFF649BJN.bam mm10 released low read length, mild to moderate bottlenecking ENCFF076BHL bed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF631VBQ, ENCFF911DLL 1653794 ENCODE Processing Pipeline 220ea98008814ecef42539c4e992766d https://www.encodeproject.org/files/ENCFF076BHL/@@download/ENCFF076BHL.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF512ELT bed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF649BJN 1444131 ENCODE Processing Pipeline 4231c17c7fa73e0e1fe590f9d9cb1e5d https://www.encodeproject.org/files/ENCFF512ELT/@@download/ENCFF512ELT.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF426AFP bed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF568KLX, ENCFF631VBQ, ENCFF649BJN, ENCFF911DLL 1610702 ENCODE Processing Pipeline bb2328edda33fa0dfbdf561b61dcbdfe https://www.encodeproject.org/files/ENCFF426AFP/@@download/ENCFF426AFP.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF312YDC bigBed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF076BHL 4756000 ENCODE Processing Pipeline 88814bcb04475a6e39dd51d0f7f278ed https://www.encodeproject.org/files/ENCFF312YDC/@@download/ENCFF312YDC.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF480ECH bigBed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF512ELT 4130234 ENCODE Processing Pipeline fd0124e9fb3b3be4dbc2c817d65c1f1c https://www.encodeproject.org/files/ENCFF480ECH/@@download/ENCFF480ECH.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF487FVO bigBed narrowPeak peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF426AFP 4510762 ENCODE Processing Pipeline dac4257f8c61d737ba2ce3135e9b45d8 https://www.encodeproject.org/files/ENCFF487FVO/@@download/ENCFF487FVO.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF217FBW bigWig signal p-value ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF631VBQ, ENCFF911DLL 545684944 ENCODE Processing Pipeline d0c704d2442a18656847680c8c0e5f80 https://www.encodeproject.org/files/ENCFF217FBW/@@download/ENCFF217FBW.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF549QDY bigWig signal p-value ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF649BJN 477188293 ENCODE Processing Pipeline b3b6b85134fd660ca07c485583528a3b https://www.encodeproject.org/files/ENCFF549QDY/@@download/ENCFF549QDY.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF433JHZ bigWig signal p-value ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF568KLX, ENCFF631VBQ, ENCFF649BJN, ENCFF911DLL 873429045 ENCODE Processing Pipeline f665d86ff2733e78b85dd7abfe17bc9e https://www.encodeproject.org/files/ENCFF433JHZ/@@download/ENCFF433JHZ.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF772RHI bigWig fold change over control ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF631VBQ, ENCFF911DLL 578734677 ENCODE Processing Pipeline b01ff2c5b423c70b5ba49bf50fd85a72 https://www.encodeproject.org/files/ENCFF772RHI/@@download/ENCFF772RHI.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF485AJW bigWig fold change over control ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF649BJN 477837834 ENCODE Processing Pipeline 12eb3438d0a22df25be967f0461a83b6 https://www.encodeproject.org/files/ENCFF485AJW/@@download/ENCFF485AJW.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF829GXB bigWig fold change over control ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF568KLX, ENCFF631VBQ, ENCFF649BJN, ENCFF911DLL 915482231 ENCODE Processing Pipeline f3c65d3123cbceae76d5d712d854ac8c https://www.encodeproject.org/files/ENCFF829GXB/@@download/ENCFF829GXB.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF514SMO bed narrowPeak replicated peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF076BHL, ENCFF426AFP, ENCFF512ELT 1538887 ENCODE Processing Pipeline 9a35b60074bee366c34257aaab487fae https://www.encodeproject.org/files/ENCFF514SMO/@@download/ENCFF514SMO.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF686TPZ bigBed narrowPeak replicated peaks ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF514SMO 3250349 ENCODE Processing Pipeline 079195fe4474747b707aff1833419aa5 https://www.encodeproject.org/files/ENCFF686TPZ/@@download/ENCFF686TPZ.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF001MAL bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MAV 5611590314 Ross Hardison, PennState 40f491082341ba31108dea3018f0607c https://www.encodeproject.org/files/ENCFF001MAL/@@download/ENCFF001MAL.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MAM bigBed broadPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDA 1085337 Ross Hardison, PennState 83707bc87db6a4532306c1d70f96f74f https://www.encodeproject.org/files/ENCFF001MAM/@@download/ENCFF001MAM.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MAN bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MAU 4008667711 Ross Hardison, PennState de8433396fe899d6a5809458dae08363 https://www.encodeproject.org/files/ENCFF001MAN/@@download/ENCFF001MAN.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MAO bigBed broadPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDB 814264 Ross Hardison, PennState 7a983799a3cf67518bde4f2dd68e2de5 https://www.encodeproject.org/files/ENCFF001MAO/@@download/ENCFF001MAO.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MAP bigBed broadPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDC 1318887 Ross Hardison, PennState bce7c3dd9fb9d43cda1fef751697f1da https://www.encodeproject.org/files/ENCFF001MAP/@@download/ENCFF001MAP.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MAQ bigWig signal ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 4439656094 Ross Hardison, PennState a5aee54a1bf767a634de6f0f39735e32 https://www.encodeproject.org/files/ENCFF001MAQ/@@download/ENCFF001MAQ.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MAR bigWig signal ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 3173092097 Ross Hardison, PennState c84d4d9e49e81c71f922162c4e07e0cd https://www.encodeproject.org/files/ENCFF001MAR/@@download/ENCFF001MAR.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MAS bigWig signal ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 4971275818 Ross Hardison, PennState 5a0d2f0725c639e239ba2e6712fa3b33 https://www.encodeproject.org/files/ENCFF001MAS/@@download/ENCFF001MAS.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MAU fastq reads ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 3822112567 Ross Hardison, PennState 7dfc1c6268c03c978e538eae79d4145d https://www.encodeproject.org/files/ENCFF001MAU/@@download/ENCFF001MAU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MPG/ released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MAV fastq reads ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 5556646273 Ross Hardison, PennState 349175733fed3023aba3a8985361e016 https://www.encodeproject.org/files/ENCFF001MAV/@@download/ENCFF001MAV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MOR/ released mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length biological replicates with identical biosample ENCFF001YDA bed broadPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 632245 Ross Hardison, PennState de41f6602327928024f4513c6acd3029 https://www.encodeproject.org/files/ENCFF001YDA/@@download/ENCFF001YDA.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDB bed broadPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 472544 Ross Hardison, PennState 95311736dad7aadee1117e1417184d2b https://www.encodeproject.org/files/ENCFF001YDB/@@download/ENCFF001YDB.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDC bed broadPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 774299 Ross Hardison, PennState 7d372bcf6970101cb4dfc85b6460f901 https://www.encodeproject.org/files/ENCFF001YDC/@@download/ENCFF001YDC.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF126DSF bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MAU, ENCFF806TVZ 2999200460 ENCODE Processing Pipeline bd3d2de09cc387809372bf8b2dbf1479 https://www.encodeproject.org/files/ENCFF126DSF/@@download/ENCFF126DSF.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF114UAP bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MAV, ENCFF806TVZ 4377831412 ENCODE Processing Pipeline 9b28a69180958e60602fbd234de6413a https://www.encodeproject.org/files/ENCFF114UAP/@@download/ENCFF114UAP.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF660KZO bam unfiltered alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAU, ENCFF018NEO 3360174545 ENCODE Processing Pipeline c70c56ef37041d7a99b5373371496c63 https://www.encodeproject.org/files/ENCFF660KZO/@@download/ENCFF660KZO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF371KOF bam unfiltered alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAV, ENCFF018NEO 4495318732 ENCODE Processing Pipeline 42e6f2e5617cde41fcded6594ea3757d https://www.encodeproject.org/files/ENCFF371KOF/@@download/ENCFF371KOF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF108QHS bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAU, ENCFF018NEO 2340785237 ENCODE Processing Pipeline 8904e54d087ccb21b6646e36d9a3e150 https://www.encodeproject.org/files/ENCFF108QHS/@@download/ENCFF108QHS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF716XGF bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAV, ENCFF018NEO 3266593029 ENCODE Processing Pipeline bc30b433213557a205b95e5329766a2e https://www.encodeproject.org/files/ENCFF716XGF/@@download/ENCFF716XGF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF463MTH bed narrowPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF716XGF, ENCFF984QUA 3840108 ENCODE Processing Pipeline c469280be509ac79b72396a4727868df https://www.encodeproject.org/files/ENCFF463MTH/@@download/ENCFF463MTH.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF058HEJ bed narrowPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF108QHS, ENCFF984QUA 4188959 ENCODE Processing Pipeline 6e341fdd4df6117932ff239e8e10d562 https://www.encodeproject.org/files/ENCFF058HEJ/@@download/ENCFF058HEJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF284BJX bigBed narrowPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF463MTH 7916681 ENCODE Processing Pipeline 5da05c2fba3d4644b6aaed137291c4ff https://www.encodeproject.org/files/ENCFF284BJX/@@download/ENCFF284BJX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF967OSE bigBed narrowPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF058HEJ 9080172 ENCODE Processing Pipeline a3bb29ce46c8bb59d6c696ddc878c7c4 https://www.encodeproject.org/files/ENCFF967OSE/@@download/ENCFF967OSE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF631GJQ bigBed narrowPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF612EQE 8512901 ENCODE Processing Pipeline f315161e5bd5f365948add018e1866d3 https://www.encodeproject.org/files/ENCFF631GJQ/@@download/ENCFF631GJQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF612EQE bed narrowPeak peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF108QHS, ENCFF716XGF, ENCFF984QUA 4078089 ENCODE Processing Pipeline 3c6e83f95b3f206aa4a99120894895d9 https://www.encodeproject.org/files/ENCFF612EQE/@@download/ENCFF612EQE.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF777ALN bigWig signal p-value ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF716XGF, ENCFF984QUA 1249338387 ENCODE Processing Pipeline f13514f8c0988922fb06640da5b176ef https://www.encodeproject.org/files/ENCFF777ALN/@@download/ENCFF777ALN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF237CXE bigWig signal p-value ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF108QHS, ENCFF984QUA 991513426 ENCODE Processing Pipeline b897c08a6b685a45f1e4421f2787ceec https://www.encodeproject.org/files/ENCFF237CXE/@@download/ENCFF237CXE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF793KFP bigWig fold change over control ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF716XGF, ENCFF984QUA 1251747919 ENCODE Processing Pipeline 652d576b09ed612a7dd39e20f26b686d https://www.encodeproject.org/files/ENCFF793KFP/@@download/ENCFF793KFP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF867ABL bigWig signal p-value ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF108QHS, ENCFF716XGF, ENCFF984QUA 1253161559 ENCODE Processing Pipeline e47f846d29b8daba11f770a7e5a45fc5 https://www.encodeproject.org/files/ENCFF867ABL/@@download/ENCFF867ABL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF950YLH bigWig fold change over control ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF108QHS, ENCFF984QUA 895671600 ENCODE Processing Pipeline f1238c0910c26aed53a2ae9aa831c2a7 https://www.encodeproject.org/files/ENCFF950YLH/@@download/ENCFF950YLH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF997LDV bigBed narrowPeak replicated peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF557TDE 7548884 ENCODE Processing Pipeline 16745b9679272d7d375f2d7aaf9532cb https://www.encodeproject.org/files/ENCFF997LDV/@@download/ENCFF997LDV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF557TDE bed narrowPeak replicated peaks ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF058HEJ, ENCFF463MTH, ENCFF612EQE 5244528 ENCODE Processing Pipeline d08a7dd746d2bf0d891f8e3f0caa95c6 https://www.encodeproject.org/files/ENCFF557TDE/@@download/ENCFF557TDE.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF613LOW bigWig fold change over control ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF108QHS, ENCFF716XGF, ENCFF984QUA 1594719377 ENCODE Processing Pipeline b89dd58f9b75be090727997a28ffcc3c https://www.encodeproject.org/files/ENCFF613LOW/@@download/ENCFF613LOW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF086BUY fastq reads ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3861647626 Bing Ren, UCSD 160ca3b0801a375bcd54bcc20202c7ee SRA:SRR3653187 https://www.encodeproject.org/files/ENCFF086BUY/@@download/ENCFF086BUY.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released inconsistent platforms ENCFF482TKQ fastq reads ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3346493083 Bing Ren, UCSD de50a414f4d00702e1f4926bfc7d95c9 SRA:SRR3653188 https://www.encodeproject.org/files/ENCFF482TKQ/@@download/ENCFF482TKQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released inconsistent platforms ENCFF987ZEY bam alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF086BUY, ENCFF806TVZ 3356977467 ENCODE Processing Pipeline 6fe9fe7ffa36f6f8daa61fbf543cadc9 https://www.encodeproject.org/files/ENCFF987ZEY/@@download/ENCFF987ZEY.bam mm10-minimal archived inconsistent platforms ENCFF534VLK bam alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF482TKQ, ENCFF806TVZ 2989189956 ENCODE Processing Pipeline 86a2ed34077bf32ba2371c8a9fcb0a0b https://www.encodeproject.org/files/ENCFF534VLK/@@download/ENCFF534VLK.bam mm10-minimal archived inconsistent platforms ENCFF550PAW bigBed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF750DHU 8399297 ENCODE Processing Pipeline 46a5dfd9cde67ec6fead841011559fe9 https://www.encodeproject.org/files/ENCFF550PAW/@@download/ENCFF550PAW.bigBed mm10-minimal archived inconsistent platforms ENCFF345ESZ bed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF534VLK, ENCFF792GEI 3282177 ENCODE Processing Pipeline b1d95c61b049bc0f799de8965f453162 https://www.encodeproject.org/files/ENCFF345ESZ/@@download/ENCFF345ESZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF750DHU bed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF987ZEY 3031428 ENCODE Processing Pipeline 7e0fba7b124ed7703a7077207b1f55d3 https://www.encodeproject.org/files/ENCFF750DHU/@@download/ENCFF750DHU.bed.gz mm10-minimal archived inconsistent platforms ENCFF933HBR bigWig signal p-value ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF534VLK, ENCFF792GEI, ENCFF987ZEY 1565777541 ENCODE Processing Pipeline 8eac16f8112e98c0f24c48740f0b7131 https://www.encodeproject.org/files/ENCFF933HBR/@@download/ENCFF933HBR.bigWig mm10-minimal archived inconsistent platforms ENCFF833BVD bigBed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF345ESZ 9016531 ENCODE Processing Pipeline 513be00d752d4ed2eff1521670e94a7e https://www.encodeproject.org/files/ENCFF833BVD/@@download/ENCFF833BVD.bigBed mm10-minimal archived inconsistent platforms ENCFF869MPW bigWig signal p-value ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF534VLK, ENCFF792GEI 1237704731 ENCODE Processing Pipeline 2f5b4b340c8e7d096686e71225b67f4e https://www.encodeproject.org/files/ENCFF869MPW/@@download/ENCFF869MPW.bigWig mm10-minimal archived inconsistent platforms ENCFF762FOY bed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF534VLK, ENCFF792GEI, ENCFF987ZEY 2900942 ENCODE Processing Pipeline 203cc7692aafaa09095cec5238b9878c https://www.encodeproject.org/files/ENCFF762FOY/@@download/ENCFF762FOY.bed.gz mm10-minimal archived inconsistent platforms ENCFF679MRS bigBed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF762FOY 8011710 ENCODE Processing Pipeline c47e70e539954875f7340e3e34701531 https://www.encodeproject.org/files/ENCFF679MRS/@@download/ENCFF679MRS.bigBed mm10-minimal archived inconsistent platforms ENCFF631RLG bigWig signal p-value ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF987ZEY 1315934198 ENCODE Processing Pipeline 9eaa1371b3331e03aac5363028c232dc https://www.encodeproject.org/files/ENCFF631RLG/@@download/ENCFF631RLG.bigWig mm10-minimal archived inconsistent platforms ENCFF426DEY bigWig fold change over control ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF534VLK, ENCFF792GEI 1241800555 ENCODE Processing Pipeline 2dec131f841df0b44a62767bda5bc44f https://www.encodeproject.org/files/ENCFF426DEY/@@download/ENCFF426DEY.bigWig mm10-minimal archived inconsistent platforms ENCFF185ABV bigWig fold change over control ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF987ZEY 1310754483 ENCODE Processing Pipeline 0514feab8a63853157791e5aa11bcda2 https://www.encodeproject.org/files/ENCFF185ABV/@@download/ENCFF185ABV.bigWig mm10-minimal archived inconsistent platforms ENCFF494HAK bigWig fold change over control ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF534VLK, ENCFF792GEI, ENCFF987ZEY 1763639605 ENCODE Processing Pipeline 67e399afbc87804ad384837953135544 https://www.encodeproject.org/files/ENCFF494HAK/@@download/ENCFF494HAK.bigWig mm10-minimal archived inconsistent platforms ENCFF839ZID bed narrowPeak replicated peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF345ESZ, ENCFF750DHU, ENCFF762FOY 3074085 ENCODE Processing Pipeline ba8ab75227cdb7dc33b7ad0e2bfa7d29 https://www.encodeproject.org/files/ENCFF839ZID/@@download/ENCFF839ZID.bed.gz mm10-minimal archived inconsistent platforms ENCFF743GWB bigBed narrowPeak replicated peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF839ZID 6289331 ENCODE Processing Pipeline 79010f1c3bdcf83fa26ffdae19323405 https://www.encodeproject.org/files/ENCFF743GWB/@@download/ENCFF743GWB.bigBed mm10-minimal archived inconsistent platforms ENCFF360FQV bam unfiltered alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF482TKQ 3982375049 ENCODE Processing Pipeline 762181849a037be1a520b061646c9514 https://www.encodeproject.org/files/ENCFF360FQV/@@download/ENCFF360FQV.bam mm10 released inconsistent platforms ENCFF358JDN bam unfiltered alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF086BUY 4585600586 ENCODE Processing Pipeline 069e5119a436e22e10085747bb3be0b1 https://www.encodeproject.org/files/ENCFF358JDN/@@download/ENCFF358JDN.bam mm10 released inconsistent platforms ENCFF551NRH bam alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF086BUY 3356388027 ENCODE Processing Pipeline d0e697425f2ff45e623d43066adfd8d1 https://www.encodeproject.org/files/ENCFF551NRH/@@download/ENCFF551NRH.bam mm10 released inconsistent platforms ENCFF924YFS bam alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF482TKQ 2988681993 ENCODE Processing Pipeline 0bc12c14d5f8cc2bfb490884236370a5 https://www.encodeproject.org/files/ENCFF924YFS/@@download/ENCFF924YFS.bam mm10 released inconsistent platforms ENCFF028DNG bed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF551NRH, ENCFF880SQD 2487581 ENCODE Processing Pipeline 4f022e8dbb179cdc61375d6ee135411b https://www.encodeproject.org/files/ENCFF028DNG/@@download/ENCFF028DNG.bed.gz mm10 released inconsistent platforms ENCFF685DEM bed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF880SQD, ENCFF901RYX, ENCFF924YFS 3047233 ENCODE Processing Pipeline 195b7042eca19a25958a76943ba8d54f https://www.encodeproject.org/files/ENCFF685DEM/@@download/ENCFF685DEM.bed.gz mm10 released inconsistent platforms ENCFF435LOB bed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF551NRH, ENCFF880SQD, ENCFF901RYX, ENCFF924YFS 3123178 ENCODE Processing Pipeline c95bab2f47473a168d6f14d62e4f19c9 https://www.encodeproject.org/files/ENCFF435LOB/@@download/ENCFF435LOB.bed.gz mm10 released inconsistent platforms ENCFF921MZQ bigBed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF685DEM 8418825 ENCODE Processing Pipeline 517c3bfc2cc9bbd1082fdf540ee5f2ec https://www.encodeproject.org/files/ENCFF921MZQ/@@download/ENCFF921MZQ.bigBed mm10 released inconsistent platforms ENCFF693NMT bigBed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF028DNG 6971165 ENCODE Processing Pipeline 0ed2d2bb2f7c55ec070812f239782e40 https://www.encodeproject.org/files/ENCFF693NMT/@@download/ENCFF693NMT.bigBed mm10 released inconsistent platforms ENCFF621BZS bigBed narrowPeak peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF435LOB 8578744 ENCODE Processing Pipeline 0817d899cea88e1aa81f171665f77577 https://www.encodeproject.org/files/ENCFF621BZS/@@download/ENCFF621BZS.bigBed mm10 released inconsistent platforms ENCFF494MKV bigWig signal p-value ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF880SQD, ENCFF901RYX, ENCFF924YFS 1020739289 ENCODE Processing Pipeline c3a409a10f8331fce3a359eb9100a6cc https://www.encodeproject.org/files/ENCFF494MKV/@@download/ENCFF494MKV.bigWig mm10 released inconsistent platforms ENCFF974TFZ bigWig signal p-value ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF551NRH, ENCFF880SQD 1025763302 ENCODE Processing Pipeline 69fb375bc3b4b4916a20a77d40d58fc7 https://www.encodeproject.org/files/ENCFF974TFZ/@@download/ENCFF974TFZ.bigWig mm10 released inconsistent platforms ENCFF607HBJ bigWig signal p-value ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF551NRH, ENCFF880SQD, ENCFF901RYX, ENCFF924YFS 1694205636 ENCODE Processing Pipeline 0b2cb791875e2ced967e9de5d49e75c3 https://www.encodeproject.org/files/ENCFF607HBJ/@@download/ENCFF607HBJ.bigWig mm10 released inconsistent platforms ENCFF102DIZ bigWig fold change over control ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF880SQD, ENCFF901RYX, ENCFF924YFS 1294725755 ENCODE Processing Pipeline cafe7ed5ecd24b80e502a726aab75ef6 https://www.encodeproject.org/files/ENCFF102DIZ/@@download/ENCFF102DIZ.bigWig mm10 released inconsistent platforms ENCFF852MUV bigWig fold change over control ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF551NRH, ENCFF880SQD 1089833175 ENCODE Processing Pipeline b11e5e465bf2d5fc397f8d4a32ef8d3e https://www.encodeproject.org/files/ENCFF852MUV/@@download/ENCFF852MUV.bigWig mm10 released inconsistent platforms ENCFF059NRZ bigWig fold change over control ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF551NRH, ENCFF880SQD, ENCFF901RYX, ENCFF924YFS 1803876597 ENCODE Processing Pipeline f8545e1863db012ca8eb19003d7a6799 https://www.encodeproject.org/files/ENCFF059NRZ/@@download/ENCFF059NRZ.bigWig mm10 released inconsistent platforms ENCFF896VGU bed narrowPeak replicated peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF028DNG, ENCFF435LOB, ENCFF685DEM 2971274 ENCODE Processing Pipeline e68e616f4a7df94329b67fc4c9c771b2 https://www.encodeproject.org/files/ENCFF896VGU/@@download/ENCFF896VGU.bed.gz mm10 released inconsistent platforms ENCFF288GWI bigBed narrowPeak replicated peaks ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF896VGU 6050074 ENCODE Processing Pipeline a7156d9a0bc86ccdbef7ae4ed744abef https://www.encodeproject.org/files/ENCFF288GWI/@@download/ENCFF288GWI.bigBed mm10 released inconsistent platforms ENCFF002ALY fastq reads ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1051265387 Bing Ren, UCSD fd3d6f991f0f023bf998a1b9c5ba428d SRA:SRR3651267 https://www.encodeproject.org/files/ENCFF002ALY/@@download/ENCFF002ALY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released low read length, mild to moderate bottlenecking, low read depth ENCFF002ALZ fastq reads ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1194259561 Bing Ren, UCSD 50621fca1542f82ae58672df24593977 SRA:SRR3651268 https://www.encodeproject.org/files/ENCFF002ALZ/@@download/ENCFF002ALZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APR/ released low read length, mild to moderate bottlenecking, low read depth ENCFF798HGH bam alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALZ, ENCFF806TVZ 790865940 ENCODE Processing Pipeline 753a70d628e9f03dce92e8c0ef033d68 https://www.encodeproject.org/files/ENCFF798HGH/@@download/ENCFF798HGH.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF499PQT bam alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALY, ENCFF806TVZ 703363675 ENCODE Processing Pipeline 372cb6dd2c4ac570dffcd075f4663c8d https://www.encodeproject.org/files/ENCFF499PQT/@@download/ENCFF499PQT.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF571DOP bed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF499PQT, ENCFF798HGH, ENCFF893KXG 598142 ENCODE Processing Pipeline 9647ccf304467a105c7df6e1c66f6e56 https://www.encodeproject.org/files/ENCFF571DOP/@@download/ENCFF571DOP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF793VBC bed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF798HGH, ENCFF893KXG 546973 ENCODE Processing Pipeline 54b6143fc8930b5f05211e3fa39526f1 https://www.encodeproject.org/files/ENCFF793VBC/@@download/ENCFF793VBC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF591IXT bed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF499PQT 528755 ENCODE Processing Pipeline 04b6557a9384f85d024edeae23f77ae2 https://www.encodeproject.org/files/ENCFF591IXT/@@download/ENCFF591IXT.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF085ZRO bigBed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF793VBC 1789600 ENCODE Processing Pipeline ef4035cb8b5ad03cd985b51ec698d8c7 https://www.encodeproject.org/files/ENCFF085ZRO/@@download/ENCFF085ZRO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF967OLP bigBed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF571DOP 1867362 ENCODE Processing Pipeline e4731f0a6e5452cdf7b3afb2194c20a8 https://www.encodeproject.org/files/ENCFF967OLP/@@download/ENCFF967OLP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF989KBW bigBed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF591IXT 1734006 ENCODE Processing Pipeline ca7cd38805c3d28ea0b558ffa6234ea4 https://www.encodeproject.org/files/ENCFF989KBW/@@download/ENCFF989KBW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF424TAT bigWig signal p-value ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF499PQT 322605513 ENCODE Processing Pipeline 3abf0fde44f937be5d0c386c68074c1f https://www.encodeproject.org/files/ENCFF424TAT/@@download/ENCFF424TAT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF187JFT bigWig signal p-value ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF798HGH, ENCFF893KXG 379141956 ENCODE Processing Pipeline ae2c2b5ca1804d045e27467b05ac8cd1 https://www.encodeproject.org/files/ENCFF187JFT/@@download/ENCFF187JFT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF851JPV bigWig signal p-value ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF499PQT, ENCFF798HGH, ENCFF893KXG 558898100 ENCODE Processing Pipeline 67e7ebbfda404d14a7299753ebc66554 https://www.encodeproject.org/files/ENCFF851JPV/@@download/ENCFF851JPV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF659RSW bigWig fold change over control ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF499PQT 306501640 ENCODE Processing Pipeline d418fb88f26cf9bb7f38b43b5d45146d https://www.encodeproject.org/files/ENCFF659RSW/@@download/ENCFF659RSW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF608IRV bigWig fold change over control ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF798HGH, ENCFF893KXG 295777317 ENCODE Processing Pipeline 7bf6254a9bec027a62ce0138c48fad71 https://www.encodeproject.org/files/ENCFF608IRV/@@download/ENCFF608IRV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF071FIM bed narrowPeak replicated peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF571DOP, ENCFF591IXT, ENCFF793VBC 670561 ENCODE Processing Pipeline d59035225f42cfc6b322bbb3f38765bc https://www.encodeproject.org/files/ENCFF071FIM/@@download/ENCFF071FIM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF014QDY bigBed narrowPeak replicated peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF071FIM 1591716 ENCODE Processing Pipeline 35994559f86fc839764e41f7786696f9 https://www.encodeproject.org/files/ENCFF014QDY/@@download/ENCFF014QDY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF101ZGU bigWig fold change over control ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF499PQT, ENCFF798HGH, ENCFF893KXG 589231261 ENCODE Processing Pipeline e43e04409b4577177544d0c2737a420b https://www.encodeproject.org/files/ENCFF101ZGU/@@download/ENCFF101ZGU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF665QBJ bam unfiltered alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALZ, ENCFF018NEO 1169942731 ENCODE Processing Pipeline 920a872cf956f37a3f7b634f71b61072 https://www.encodeproject.org/files/ENCFF665QBJ/@@download/ENCFF665QBJ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF724DMU bam unfiltered alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALY, ENCFF018NEO 1045567737 ENCODE Processing Pipeline 214a021fd8699efb51dfa318523a5bb4 https://www.encodeproject.org/files/ENCFF724DMU/@@download/ENCFF724DMU.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF676FCR bam alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALZ, ENCFF018NEO 790774223 ENCODE Processing Pipeline f2dc477af1f82c1e6f56df2bf633ec3d https://www.encodeproject.org/files/ENCFF676FCR/@@download/ENCFF676FCR.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF505WSS bam alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALY, ENCFF018NEO 703235335 ENCODE Processing Pipeline 0eec10897a73a11a4087e5c924f21ccc https://www.encodeproject.org/files/ENCFF505WSS/@@download/ENCFF505WSS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF295EYC bed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF676FCR 545078 ENCODE Processing Pipeline 1dfea55840a65cadd862263be918f425 https://www.encodeproject.org/files/ENCFF295EYC/@@download/ENCFF295EYC.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF559XTI bed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF505WSS, ENCFF921XQX 528894 ENCODE Processing Pipeline 665e40778b737b83ed78018c10710a2d https://www.encodeproject.org/files/ENCFF559XTI/@@download/ENCFF559XTI.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF172NXN bed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF505WSS, ENCFF676FCR, ENCFF921XQX 598339 ENCODE Processing Pipeline 32d3fe93a37d116cabe17ed808c72d2b https://www.encodeproject.org/files/ENCFF172NXN/@@download/ENCFF172NXN.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF550HLK bigBed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF295EYC 1786080 ENCODE Processing Pipeline 4b7d51b459aa27a092ae06f8ee512705 https://www.encodeproject.org/files/ENCFF550HLK/@@download/ENCFF550HLK.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF035SSA bigBed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF559XTI 1735715 ENCODE Processing Pipeline 1cea9491c4a13d9287e55abf1f4be41e https://www.encodeproject.org/files/ENCFF035SSA/@@download/ENCFF035SSA.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF819GKF bigBed narrowPeak peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF172NXN 1870493 ENCODE Processing Pipeline ff44a7382620be9cd2619055e00d1113 https://www.encodeproject.org/files/ENCFF819GKF/@@download/ENCFF819GKF.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF831JDO bigWig signal p-value ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF505WSS, ENCFF921XQX 316553729 ENCODE Processing Pipeline b8219347cd3879a31e3d0d9825cbfd7e https://www.encodeproject.org/files/ENCFF831JDO/@@download/ENCFF831JDO.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF670AEK bigWig signal p-value ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF676FCR 297716053 ENCODE Processing Pipeline 732e33f36732dd5a28c8a4607a4f36de https://www.encodeproject.org/files/ENCFF670AEK/@@download/ENCFF670AEK.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF690PQK bigWig signal p-value ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF505WSS, ENCFF676FCR, ENCFF921XQX 555009821 ENCODE Processing Pipeline 8273d651bccf7eb7d4ab5f98caf23b36 https://www.encodeproject.org/files/ENCFF690PQK/@@download/ENCFF690PQK.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF891NUI bigWig fold change over control ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF505WSS, ENCFF921XQX 306192882 ENCODE Processing Pipeline 3c0de3921e16dc418acd01fcda073d79 https://www.encodeproject.org/files/ENCFF891NUI/@@download/ENCFF891NUI.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF712XVG bigWig fold change over control ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF676FCR 295756652 ENCODE Processing Pipeline 91d15c0cb63ed160c4eec96211a6d508 https://www.encodeproject.org/files/ENCFF712XVG/@@download/ENCFF712XVG.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF312WJP bigWig fold change over control ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF505WSS, ENCFF676FCR, ENCFF921XQX 589098347 ENCODE Processing Pipeline a3949f86101396933beca9a936c4730f https://www.encodeproject.org/files/ENCFF312WJP/@@download/ENCFF312WJP.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF303ITL bed narrowPeak replicated peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF172NXN, ENCFF295EYC, ENCFF559XTI 671032 ENCODE Processing Pipeline 103171e1ad7d84b55f0d71b40f721400 https://www.encodeproject.org/files/ENCFF303ITL/@@download/ENCFF303ITL.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF957ASP bigBed narrowPeak replicated peaks ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF303ITL 1594614 ENCODE Processing Pipeline fd3fa04aec138304614941888743370d https://www.encodeproject.org/files/ENCFF957ASP/@@download/ENCFF957ASP.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF002AHI fastq reads ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 887598701 Bing Ren, UCSD 6ad5c0ce51b1e022af6c067038d87ebc SRA:SRR3651894 https://www.encodeproject.org/files/ENCFF002AHI/@@download/ENCFF002AHI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARJ/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AHJ fastq reads ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 845477531 Bing Ren, UCSD b890bb3810d8d68b3ca2fc4d93739400 SRA:SRR3651896 https://www.encodeproject.org/files/ENCFF002AHJ/@@download/ENCFF002AHJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARK/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF087WWR fastq reads ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 634921572 Bing Ren, UCSD 24231cf748401195ac58e5c311bdd53f SRA:SRR3651897 https://www.encodeproject.org/files/ENCFF087WWR/@@download/ENCFF087WWR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARK/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF517FBP fastq reads ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 401710389 Bing Ren, UCSD 3455a577bf499cb8c1d6d7e3e5ca7427 SRA:SRR3651895 https://www.encodeproject.org/files/ENCFF517FBP/@@download/ENCFF517FBP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARJ/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF764LAM bam alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHJ, ENCFF087WWR, ENCFF806TVZ 1256306935 ENCODE Processing Pipeline 84c67a20c6bcb0a397cfaab09b5b4d15 https://www.encodeproject.org/files/ENCFF764LAM/@@download/ENCFF764LAM.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF102IQS bam alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHI, ENCFF517FBP, ENCFF806TVZ 1037308086 ENCODE Processing Pipeline bc9aeefc9d3fd3efde03cf7567c0bda7 https://www.encodeproject.org/files/ENCFF102IQS/@@download/ENCFF102IQS.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF245XQM bed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF102IQS, ENCFF444YOE, ENCFF934LFS 891397 ENCODE Processing Pipeline d1d90c4c6355df407f212682f9364410 https://www.encodeproject.org/files/ENCFF245XQM/@@download/ENCFF245XQM.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF530BPZ bed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF102IQS, ENCFF444YOE, ENCFF764LAM, ENCFF934LFS 845668 ENCODE Processing Pipeline d3692ed5015dc486767b3822f7b2bf78 https://www.encodeproject.org/files/ENCFF530BPZ/@@download/ENCFF530BPZ.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF307XFD bigWig signal p-value ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF102IQS, ENCFF444YOE, ENCFF934LFS 478261322 ENCODE Processing Pipeline 82aef28a4e66362f2bc10179ec3b890d https://www.encodeproject.org/files/ENCFF307XFD/@@download/ENCFF307XFD.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF730NPZ bigWig fold change over control ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF102IQS, ENCFF444YOE, ENCFF764LAM, ENCFF934LFS 776929967 ENCODE Processing Pipeline cc66275c6ada364654e02913abfb64d1 https://www.encodeproject.org/files/ENCFF730NPZ/@@download/ENCFF730NPZ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF811ICZ bigBed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF527KOI 1668809 ENCODE Processing Pipeline 66fc0cd4714807e167fb30e794dc4711 https://www.encodeproject.org/files/ENCFF811ICZ/@@download/ENCFF811ICZ.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF930CQT bigWig signal p-value ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF764LAM, ENCFF934LFS 474617881 ENCODE Processing Pipeline 6ca7ad567a2d681903109cf8e69c45ed https://www.encodeproject.org/files/ENCFF930CQT/@@download/ENCFF930CQT.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF271MRP bigBed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF245XQM 1731665 ENCODE Processing Pipeline 36dba2185e3ec3f0976b1cbba00e78c9 https://www.encodeproject.org/files/ENCFF271MRP/@@download/ENCFF271MRP.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF527KOI bed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF764LAM, ENCFF934LFS 753302 ENCODE Processing Pipeline e29bbdca00750e874deda747c3839a2d https://www.encodeproject.org/files/ENCFF527KOI/@@download/ENCFF527KOI.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF448SIM bigBed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF530BPZ 1864034 ENCODE Processing Pipeline 061875d6572863ea52387af7f7df20c8 https://www.encodeproject.org/files/ENCFF448SIM/@@download/ENCFF448SIM.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF090VYU bigWig fold change over control ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF102IQS, ENCFF444YOE, ENCFF934LFS 480592561 ENCODE Processing Pipeline ba0ef3d5ca312fddd58f8c883ddedbc9 https://www.encodeproject.org/files/ENCFF090VYU/@@download/ENCFF090VYU.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF861SVE bigWig signal p-value ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF102IQS, ENCFF444YOE, ENCFF764LAM, ENCFF934LFS 762061042 ENCODE Processing Pipeline 201a12e58e1c64b9e9828f74ad5e575b https://www.encodeproject.org/files/ENCFF861SVE/@@download/ENCFF861SVE.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF742ETI bigWig fold change over control ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF764LAM, ENCFF934LFS 493686214 ENCODE Processing Pipeline 9bc06a1d9b8bfa6fa8d796213cd8a09e https://www.encodeproject.org/files/ENCFF742ETI/@@download/ENCFF742ETI.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF435QSD bed narrowPeak replicated peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF245XQM, ENCFF527KOI, ENCFF530BPZ 311187 ENCODE Processing Pipeline 9bc545a7268b2ff67764d63fa0a6a856 https://www.encodeproject.org/files/ENCFF435QSD/@@download/ENCFF435QSD.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF878CRH bigBed narrowPeak replicated peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF435QSD 663582 ENCODE Processing Pipeline 66fde752e46964e66444064f9dd5b27d https://www.encodeproject.org/files/ENCFF878CRH/@@download/ENCFF878CRH.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF687PXP bam unfiltered alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHJ, ENCFF018NEO, ENCFF087WWR 1605498054 ENCODE Processing Pipeline 14255f91ba9f835eff9153501b869f73 https://www.encodeproject.org/files/ENCFF687PXP/@@download/ENCFF687PXP.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF118IWP bam alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHJ, ENCFF018NEO, ENCFF087WWR 1100740170 ENCODE Processing Pipeline 69842bc7f41d07c755ddbe0102e1d6c1 https://www.encodeproject.org/files/ENCFF118IWP/@@download/ENCFF118IWP.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF134BLZ bam unfiltered alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHI, ENCFF018NEO, ENCFF517FBP 1390187457 ENCODE Processing Pipeline eb829f4261bf04adbaace3aeea6f378e https://www.encodeproject.org/files/ENCFF134BLZ/@@download/ENCFF134BLZ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF619ZRW bam alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHI, ENCFF018NEO, ENCFF517FBP 929466023 ENCODE Processing Pipeline 5fc407f171422663743b41c82c410d2a https://www.encodeproject.org/files/ENCFF619ZRW/@@download/ENCFF619ZRW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF720SJP bed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF118IWP, ENCFF319PHE, ENCFF681SBF 960172 ENCODE Processing Pipeline b96cdc28bb8d9dfe0cbe7ce7768e1de9 https://www.encodeproject.org/files/ENCFF720SJP/@@download/ENCFF720SJP.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF242TDZ bed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF619ZRW, ENCFF681SBF 775720 ENCODE Processing Pipeline f89c48af740a8b6bc073e742d8cfd2e9 https://www.encodeproject.org/files/ENCFF242TDZ/@@download/ENCFF242TDZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF362EXJ bigBed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF242TDZ 1545268 ENCODE Processing Pipeline 3ca79ee83d62e6712ebb377db6a71b3b https://www.encodeproject.org/files/ENCFF362EXJ/@@download/ENCFF362EXJ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF162KPX bigBed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF720SJP 2138663 ENCODE Processing Pipeline 04af7daab307665d16c25269d7fc55f0 https://www.encodeproject.org/files/ENCFF162KPX/@@download/ENCFF162KPX.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF324COE bed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118IWP, ENCFF319PHE, ENCFF619ZRW, ENCFF681SBF 877309 ENCODE Processing Pipeline daa91cf5c749bb7748b3f9d41671b59a https://www.encodeproject.org/files/ENCFF324COE/@@download/ENCFF324COE.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF826GUF bigWig signal p-value ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF118IWP, ENCFF319PHE, ENCFF681SBF 507407113 ENCODE Processing Pipeline bf2000385d554dab13caa1496f298faa https://www.encodeproject.org/files/ENCFF826GUF/@@download/ENCFF826GUF.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF799BKC bigBed narrowPeak peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF324COE 1943792 ENCODE Processing Pipeline 72c58917738089046ce9bdffea2c9451 https://www.encodeproject.org/files/ENCFF799BKC/@@download/ENCFF799BKC.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF454WJD bigWig signal p-value ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF619ZRW, ENCFF681SBF 395723251 ENCODE Processing Pipeline 8af3b4cddd536f549c29c0cda18bcf7f https://www.encodeproject.org/files/ENCFF454WJD/@@download/ENCFF454WJD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF082XYD bigWig signal p-value ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118IWP, ENCFF319PHE, ENCFF619ZRW, ENCFF681SBF 760709267 ENCODE Processing Pipeline 77c34eabfb979883bdbfad9dfbb8b97a https://www.encodeproject.org/files/ENCFF082XYD/@@download/ENCFF082XYD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF425RUD bigWig fold change over control ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF118IWP, ENCFF319PHE, ENCFF681SBF 525675738 ENCODE Processing Pipeline 0f14fd9bbb06a3caf25a2c39304c1835 https://www.encodeproject.org/files/ENCFF425RUD/@@download/ENCFF425RUD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF566ZYD bigWig fold change over control ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF619ZRW, ENCFF681SBF 464810064 ENCODE Processing Pipeline 4d6727245322cd9bd3f37d01e1d1f39c https://www.encodeproject.org/files/ENCFF566ZYD/@@download/ENCFF566ZYD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF149AGA bigWig fold change over control ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118IWP, ENCFF319PHE, ENCFF619ZRW, ENCFF681SBF 764626238 ENCODE Processing Pipeline 64fc372be86874cb588357a141bd439a https://www.encodeproject.org/files/ENCFF149AGA/@@download/ENCFF149AGA.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF911MII bed narrowPeak replicated peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF242TDZ, ENCFF324COE, ENCFF720SJP 323875 ENCODE Processing Pipeline 6aa26b5e5d5b66be54d67da866b9c16b https://www.encodeproject.org/files/ENCFF911MII/@@download/ENCFF911MII.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF526IYN bigBed narrowPeak replicated peaks ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF911MII 692971 ENCODE Processing Pipeline 95dd1f215d7fd44653426e7c7ce1a56a https://www.encodeproject.org/files/ENCFF526IYN/@@download/ENCFF526IYN.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002DSR fastq reads ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 3 36 single-ended 422819977 Bing Ren, UCSD 29b62daa2a8a38dc984b3024ed3b2808 SRA:SRR3651964 https://www.encodeproject.org/files/ENCFF002DSR/@@download/ENCFF002DSR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQX/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DSS fastq reads ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1430178087 Bing Ren, UCSD 2a641c89ffbb190528cf8fb95cbe7c0a SRA:SRR3651967 https://www.encodeproject.org/files/ENCFF002DSS/@@download/ENCFF002DSS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQT/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DST fastq reads ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 780640969 Bing Ren, UCSD 0d3d45c830df4f3e712625e61588aa9e SRA:SRR3651965 https://www.encodeproject.org/files/ENCFF002DST/@@download/ENCFF002DST.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQX/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DSU fastq reads ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 36 single-ended 1197860835 Bing Ren, UCSD ac4fb0c4ca59161def626c2d0345f2b3 SRA:SRR3651968 https://www.encodeproject.org/files/ENCFF002DSU/@@download/ENCFF002DSU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQT/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DSX fastq reads ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 2 50 single-ended 1575201290 Bing Ren, UCSD e44226b4753b138db4b6d81016092191 SRA:SRR3651966 https://www.encodeproject.org/files/ENCFF002DSX/@@download/ENCFF002DSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQX/ released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF158XWJ bam alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002DSS, ENCFF002DSU, ENCFF806TVZ 1489059162 ENCODE Processing Pipeline ad1879a442541ed4e29b6a97e9c95de0 https://www.encodeproject.org/files/ENCFF158XWJ/@@download/ENCFF158XWJ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF078SSV bam alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002DSR, ENCFF002DST, ENCFF002DSX, ENCFF806TVZ 1558654407 ENCODE Processing Pipeline f712ebb6f40d4c628bee67a3f9c3b5ff https://www.encodeproject.org/files/ENCFF078SSV/@@download/ENCFF078SSV.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF092HPE bed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF036DBQ, ENCFF158XWJ, ENCFF431MET 417112 ENCODE Processing Pipeline 710c70fcb9ffd65747aed93a098cb639 https://www.encodeproject.org/files/ENCFF092HPE/@@download/ENCFF092HPE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF245WBW bigBed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF092HPE 822155 ENCODE Processing Pipeline 59fa926cdad41d9bd81286d24c73a8ed https://www.encodeproject.org/files/ENCFF245WBW/@@download/ENCFF245WBW.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF285WVQ bed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF036DBQ, ENCFF078SSV, ENCFF158XWJ, ENCFF431MET 551398 ENCODE Processing Pipeline fba3fa0151bf564bd8b5f94a391539bc https://www.encodeproject.org/files/ENCFF285WVQ/@@download/ENCFF285WVQ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF685UCL bed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF036DBQ, ENCFF078SSV, ENCFF431MET 814059 ENCODE Processing Pipeline 385b6c7a720b3d3c80c61862841ba742 https://www.encodeproject.org/files/ENCFF685UCL/@@download/ENCFF685UCL.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF550JYK bigBed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF685UCL 1742675 ENCODE Processing Pipeline 7fd86f09bc97af749e6186c3af5ee893 https://www.encodeproject.org/files/ENCFF550JYK/@@download/ENCFF550JYK.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF158FET bigBed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF285WVQ 1234484 ENCODE Processing Pipeline 806d2f914132517602e9d16c05501881 https://www.encodeproject.org/files/ENCFF158FET/@@download/ENCFF158FET.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF399UIK bigWig signal p-value ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF036DBQ, ENCFF158XWJ, ENCFF431MET 639265836 ENCODE Processing Pipeline 1751749c5d079cb9002c2cc2abdfc40f https://www.encodeproject.org/files/ENCFF399UIK/@@download/ENCFF399UIK.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF937NYK bigWig signal p-value ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF036DBQ, ENCFF078SSV, ENCFF431MET 570831406 ENCODE Processing Pipeline d5756e218fcc3a47d3adce67621ae695 https://www.encodeproject.org/files/ENCFF937NYK/@@download/ENCFF937NYK.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF292QBT bigWig signal p-value ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF036DBQ, ENCFF078SSV, ENCFF158XWJ, ENCFF431MET 905922482 ENCODE Processing Pipeline b2706c71e59712db3254e0c22cdbb7e9 https://www.encodeproject.org/files/ENCFF292QBT/@@download/ENCFF292QBT.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF735DQS bigWig fold change over control ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF036DBQ, ENCFF158XWJ, ENCFF431MET 729802292 ENCODE Processing Pipeline 67c1ad4ae93509702cdcf84d9d181eee https://www.encodeproject.org/files/ENCFF735DQS/@@download/ENCFF735DQS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF716WIW bigWig fold change over control ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF036DBQ, ENCFF078SSV, ENCFF431MET 687101774 ENCODE Processing Pipeline 1d3f99c9e864caec20f0dd698feb16fa https://www.encodeproject.org/files/ENCFF716WIW/@@download/ENCFF716WIW.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF046FLD bed narrowPeak replicated peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF092HPE, ENCFF285WVQ, ENCFF685UCL 229381 ENCODE Processing Pipeline 6ed26fc8ae591a8f67a96e3f93175fbb https://www.encodeproject.org/files/ENCFF046FLD/@@download/ENCFF046FLD.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF020QLQ bigBed narrowPeak replicated peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF046FLD 540507 ENCODE Processing Pipeline dea753a6adfdac9beeda1aba9c14c902 https://www.encodeproject.org/files/ENCFF020QLQ/@@download/ENCFF020QLQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF256HGX bigWig fold change over control ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF036DBQ, ENCFF078SSV, ENCFF158XWJ, ENCFF431MET 1040957374 ENCODE Processing Pipeline ad1615648d8237492f5f09c0734c3590 https://www.encodeproject.org/files/ENCFF256HGX/@@download/ENCFF256HGX.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF394PYJ bam unfiltered alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSR, ENCFF002DST, ENCFF002DSX, ENCFF018NEO 2826949037 ENCODE Processing Pipeline de9eb1e8bbaa5b082c14bb19a49eef1e https://www.encodeproject.org/files/ENCFF394PYJ/@@download/ENCFF394PYJ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF331MFJ bam unfiltered alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSS, ENCFF002DSU, ENCFF018NEO 3326410370 ENCODE Processing Pipeline 39b121327a0db38ad45bf477dddc0cc7 https://www.encodeproject.org/files/ENCFF331MFJ/@@download/ENCFF331MFJ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF403BNE bam alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSR, ENCFF002DST, ENCFF002DSX, ENCFF018NEO 1319482325 ENCODE Processing Pipeline d91d2835c313df800c5777ef5c5ddaaa https://www.encodeproject.org/files/ENCFF403BNE/@@download/ENCFF403BNE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF903JRN bam alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSS, ENCFF002DSU, ENCFF018NEO 1488349413 ENCODE Processing Pipeline 749bb3c9b87f8d0b94e1a79d00eca955 https://www.encodeproject.org/files/ENCFF903JRN/@@download/ENCFF903JRN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF479GEW bed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF903JRN 605084 ENCODE Processing Pipeline e3bf42ace52bef32ee6126c090592f47 https://www.encodeproject.org/files/ENCFF479GEW/@@download/ENCFF479GEW.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF900HTQ bed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF088KYO, ENCFF403BNE, ENCFF517WIG 548434 ENCODE Processing Pipeline 4eccec94798c533ff52811cfab7b2c07 https://www.encodeproject.org/files/ENCFF900HTQ/@@download/ENCFF900HTQ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF041RHA bigBed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF479GEW 1109802 ENCODE Processing Pipeline 9f97dfa497cbe1ae3a480ee4132fbfd9 https://www.encodeproject.org/files/ENCFF041RHA/@@download/ENCFF041RHA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF948YTM bed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF088KYO, ENCFF403BNE, ENCFF517WIG, ENCFF903JRN 548105 ENCODE Processing Pipeline bf59182735488a9041250c499b1bd4a7 https://www.encodeproject.org/files/ENCFF948YTM/@@download/ENCFF948YTM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF408PBB bigBed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF900HTQ 1283082 ENCODE Processing Pipeline 0e85a1b16ee55f21df9645cb197524ca https://www.encodeproject.org/files/ENCFF408PBB/@@download/ENCFF408PBB.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF878EML bigBed narrowPeak peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF948YTM 1234046 ENCODE Processing Pipeline 91b994c5ec064e7fb916795d7fe1dcdd https://www.encodeproject.org/files/ENCFF878EML/@@download/ENCFF878EML.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF566EOO bigWig signal p-value ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF903JRN 564590593 ENCODE Processing Pipeline df52ca949ca6be8a5e578bc732d956df https://www.encodeproject.org/files/ENCFF566EOO/@@download/ENCFF566EOO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF899NJK bigWig signal p-value ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF088KYO, ENCFF403BNE, ENCFF517WIG 623532982 ENCODE Processing Pipeline 5d507eeba23341b7cfa7c6ac777b2f26 https://www.encodeproject.org/files/ENCFF899NJK/@@download/ENCFF899NJK.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF862JCT bigWig signal p-value ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF088KYO, ENCFF403BNE, ENCFF517WIG, ENCFF903JRN 896341812 ENCODE Processing Pipeline 8367f4dbe7d5150ab8470548ab0c7fe5 https://www.encodeproject.org/files/ENCFF862JCT/@@download/ENCFF862JCT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF614PHB bigWig fold change over control ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF903JRN 693585196 ENCODE Processing Pipeline 131a04a318d5ea94d15ca7000eea9207 https://www.encodeproject.org/files/ENCFF614PHB/@@download/ENCFF614PHB.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF670PPP bigWig fold change over control ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF088KYO, ENCFF403BNE, ENCFF517WIG 621809512 ENCODE Processing Pipeline 003ad4f7f0b0a02abca267f8b1d1cbf6 https://www.encodeproject.org/files/ENCFF670PPP/@@download/ENCFF670PPP.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF919CSS bigWig fold change over control ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF088KYO, ENCFF403BNE, ENCFF517WIG, ENCFF903JRN 1024662486 ENCODE Processing Pipeline 75534fe372f587d75979e18edc981fe8 https://www.encodeproject.org/files/ENCFF919CSS/@@download/ENCFF919CSS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF198WAI bigBed narrowPeak replicated peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF029SEK 559123 ENCODE Processing Pipeline 2ac90471f0236f434d18767d187eec9a https://www.encodeproject.org/files/ENCFF198WAI/@@download/ENCFF198WAI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF029SEK bed narrowPeak replicated peaks ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF479GEW, ENCFF900HTQ, ENCFF948YTM 236306 ENCODE Processing Pipeline 05987934086fbb343115915caa6b9129 https://www.encodeproject.org/files/ENCFF029SEK/@@download/ENCFF029SEK.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF255WQY bam alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF660SXJ, ENCFF806TVZ, ENCFF944LSE 3016970778 ENCODE Processing Pipeline 602239d8cdfb2b24c5dfa99ed104c37f https://www.encodeproject.org/files/ENCFF255WQY/@@download/ENCFF255WQY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF527GCV bam alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF831DFS, ENCFF934WUF 2802558015 ENCODE Processing Pipeline 76ee54554e8380b893b6b614ad68a163 https://www.encodeproject.org/files/ENCFF527GCV/@@download/ENCFF527GCV.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF660SXJ fastq reads ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2899200649 Bing Ren, UCSD dea45c30516fd0ed4fef58503a825457 SRA:SRR3651174 https://www.encodeproject.org/files/ENCFF660SXJ/@@download/ENCFF660SXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF944LSE fastq reads ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 788144713 Bing Ren, UCSD cf576e7b1ac0e9312432f24cf954db82 SRA:SRR3651175 https://www.encodeproject.org/files/ENCFF944LSE/@@download/ENCFF944LSE.fastq.gz Illumina HiSeq 2500 /files/ENCFF890PHI/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF831DFS fastq reads ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 460861589 Bing Ren, UCSD e262a2467921b1639d660273d3a71230 SRA:SRR3651172 https://www.encodeproject.org/files/ENCFF831DFS/@@download/ENCFF831DFS.fastq.gz Illumina HiSeq 2500 /files/ENCFF586JAL/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF934WUF fastq reads ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2932747178 Bing Ren, UCSD 6601746d0232548753e149fb21514739 SRA:SRR3651173 https://www.encodeproject.org/files/ENCFF934WUF/@@download/ENCFF934WUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF518GOA bed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF493BXI, ENCFF527GCV 1748997 ENCODE Processing Pipeline 6e35d13e69170864f81fd5cef67c7a6b https://www.encodeproject.org/files/ENCFF518GOA/@@download/ENCFF518GOA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF391LNP bigBed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF483YFE 2982827 ENCODE Processing Pipeline 5fa396631fcdfba33db667671d7737f3 https://www.encodeproject.org/files/ENCFF391LNP/@@download/ENCFF391LNP.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF548NCO bigBed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF875AMK 3161951 ENCODE Processing Pipeline f089f4a89038c5802475e200e0e51dd2 https://www.encodeproject.org/files/ENCFF548NCO/@@download/ENCFF548NCO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF579EQI bigWig signal p-value ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF493BXI, ENCFF527GCV 1002984066 ENCODE Processing Pipeline 1265cb728e57490e1840f086f7e95e41 https://www.encodeproject.org/files/ENCFF579EQI/@@download/ENCFF579EQI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF875AMK bed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF255WQY, ENCFF330HOT, ENCFF493BXI 1584477 ENCODE Processing Pipeline c06f1f8a4af704f7994749f3bea4ca8a https://www.encodeproject.org/files/ENCFF875AMK/@@download/ENCFF875AMK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF483YFE bed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF255WQY, ENCFF330HOT, ENCFF493BXI, ENCFF527GCV 1544837 ENCODE Processing Pipeline feff64fbc2f4f383a420cd25f6815332 https://www.encodeproject.org/files/ENCFF483YFE/@@download/ENCFF483YFE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF299RNA bigBed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF518GOA 3521738 ENCODE Processing Pipeline 64ee4c7c798b5340f784fc13ca528f9c https://www.encodeproject.org/files/ENCFF299RNA/@@download/ENCFF299RNA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF771YYL bigWig signal p-value ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF255WQY, ENCFF330HOT, ENCFF493BXI 882890919 ENCODE Processing Pipeline 96348f11aec5799b31cc734bcf8cf136 https://www.encodeproject.org/files/ENCFF771YYL/@@download/ENCFF771YYL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF412OBE bigWig signal p-value ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF255WQY, ENCFF330HOT, ENCFF493BXI, ENCFF527GCV 1197520223 ENCODE Processing Pipeline 700d108f08053db38a91baabe05e341b https://www.encodeproject.org/files/ENCFF412OBE/@@download/ENCFF412OBE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF387FJP bigWig fold change over control ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF493BXI, ENCFF527GCV 1004062063 ENCODE Processing Pipeline 60f7f33bacc2db63aacd2ad3c05665ef https://www.encodeproject.org/files/ENCFF387FJP/@@download/ENCFF387FJP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF124ANF bigWig fold change over control ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF255WQY, ENCFF330HOT, ENCFF493BXI 1055064414 ENCODE Processing Pipeline 5177f3716de734776f2e12c02ecb53c0 https://www.encodeproject.org/files/ENCFF124ANF/@@download/ENCFF124ANF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF645EWR bigWig fold change over control ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF255WQY, ENCFF330HOT, ENCFF493BXI, ENCFF527GCV 1549076981 ENCODE Processing Pipeline 2e8374b723a99b57e1de5b5d0bff2bb1 https://www.encodeproject.org/files/ENCFF645EWR/@@download/ENCFF645EWR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF692HNB bed narrowPeak replicated peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF483YFE, ENCFF518GOA, ENCFF875AMK 1115371 ENCODE Processing Pipeline f85c4b21fcc0dafe3784dc35a6713e0f https://www.encodeproject.org/files/ENCFF692HNB/@@download/ENCFF692HNB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF641DDE bigBed narrowPeak replicated peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF692HNB 2388462 ENCODE Processing Pipeline 91caf3772ed790d20853abab8fd4639e https://www.encodeproject.org/files/ENCFF641DDE/@@download/ENCFF641DDE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF651ZLA bam unfiltered alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF660SXJ, ENCFF944LSE 4357774810 ENCODE Processing Pipeline 41b41a16b0a484be9c098a566c718e03 https://www.encodeproject.org/files/ENCFF651ZLA/@@download/ENCFF651ZLA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF401MKL bam unfiltered alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF831DFS, ENCFF934WUF 4008742000 ENCODE Processing Pipeline 8110743e7b6bb2516ed6e1b96c6809eb https://www.encodeproject.org/files/ENCFF401MKL/@@download/ENCFF401MKL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF913IOZ bam alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF831DFS, ENCFF934WUF 2802037971 ENCODE Processing Pipeline 3681ed22bde3caf68f4c335b26f925c7 https://www.encodeproject.org/files/ENCFF913IOZ/@@download/ENCFF913IOZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF969VKD bam alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF660SXJ, ENCFF944LSE 3016429388 ENCODE Processing Pipeline 194a2e9eaa405e0a16978e6ea98e6cfa https://www.encodeproject.org/files/ENCFF969VKD/@@download/ENCFF969VKD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF335YTD bed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF913IOZ 1764454 ENCODE Processing Pipeline 21970a424761e704d260e0536b361494 https://www.encodeproject.org/files/ENCFF335YTD/@@download/ENCFF335YTD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF418LTP bed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF279URC, ENCFF893IOJ, ENCFF969VKD 1726363 ENCODE Processing Pipeline 10a7a4c034acc9aed834ff539c6c0e1c https://www.encodeproject.org/files/ENCFF418LTP/@@download/ENCFF418LTP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF516NFI bed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF893IOJ, ENCFF913IOZ, ENCFF969VKD 2032798 ENCODE Processing Pipeline 215617b4b5f4803e256a6acfad81f381 https://www.encodeproject.org/files/ENCFF516NFI/@@download/ENCFF516NFI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF325XZC bigBed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF418LTP 3427633 ENCODE Processing Pipeline 8464c6ed394f9a1d052fa9b91d0fb99d https://www.encodeproject.org/files/ENCFF325XZC/@@download/ENCFF325XZC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF394ZMY bigBed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF335YTD 3541120 ENCODE Processing Pipeline b597ab3f0e1708e1421cc2d0806724a4 https://www.encodeproject.org/files/ENCFF394ZMY/@@download/ENCFF394ZMY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF527BYR bigBed narrowPeak peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF516NFI 3965912 ENCODE Processing Pipeline 42c399c7151f3480c4de04c74f40201a https://www.encodeproject.org/files/ENCFF527BYR/@@download/ENCFF527BYR.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF103CZN bigWig signal p-value ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF913IOZ 667791302 ENCODE Processing Pipeline b2c46547adbcdcfb1715cc86f2d116a2 https://www.encodeproject.org/files/ENCFF103CZN/@@download/ENCFF103CZN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF211TYG bigWig signal p-value ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF279URC, ENCFF893IOJ, ENCFF969VKD 1144218075 ENCODE Processing Pipeline e24e16d25990dca01936fc7562c9e819 https://www.encodeproject.org/files/ENCFF211TYG/@@download/ENCFF211TYG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF994UUX bigWig signal p-value ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF893IOJ, ENCFF913IOZ, ENCFF969VKD 1616257241 ENCODE Processing Pipeline 5923b688cebf4a3989379f2b1711fc1c https://www.encodeproject.org/files/ENCFF994UUX/@@download/ENCFF994UUX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF857JWN bigWig fold change over control ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF913IOZ 918553352 ENCODE Processing Pipeline 3b87644e88312f508ac86615d5676fa2 https://www.encodeproject.org/files/ENCFF857JWN/@@download/ENCFF857JWN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF596MVP bigWig fold change over control ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF279URC, ENCFF893IOJ, ENCFF969VKD 1145879509 ENCODE Processing Pipeline 9af88cf7695e38b1dd13fb0ac00f7d3e https://www.encodeproject.org/files/ENCFF596MVP/@@download/ENCFF596MVP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF672JMP bigWig fold change over control ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF893IOJ, ENCFF913IOZ, ENCFF969VKD 1687756323 ENCODE Processing Pipeline 7bbe2d8d58b8c761e2be5579f275ed6d https://www.encodeproject.org/files/ENCFF672JMP/@@download/ENCFF672JMP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF608SKE bigBed narrowPeak replicated peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF761GSC 2636029 ENCODE Processing Pipeline 852bcdcb34c580071c48597a62db20eb https://www.encodeproject.org/files/ENCFF608SKE/@@download/ENCFF608SKE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF761GSC bed narrowPeak replicated peaks ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF335YTD, ENCFF418LTP, ENCFF516NFI 1249561 ENCODE Processing Pipeline 6c46e944c81fc787f2195225545bfa08 https://www.encodeproject.org/files/ENCFF761GSC/@@download/ENCFF761GSC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001ZSM fastq reads ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 943126711 Bing Ren, UCSD 8b4276a77fd0e001f63ee0290caf2640 SRA:SRR3652966 https://www.encodeproject.org/files/ENCFF001ZSM/@@download/ENCFF001ZSM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVC/ released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF001ZSP fastq reads ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1274202988 Bing Ren, UCSD aa3a197afe9a16df0eb1fc307aa2f589 SRA:SRR3652965 https://www.encodeproject.org/files/ENCFF001ZSP/@@download/ENCFF001ZSP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUY/ released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF587JTD bam alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSM, ENCFF806TVZ 726591113 ENCODE Processing Pipeline dceaba50fae5284ed1073984de4e9394 https://www.encodeproject.org/files/ENCFF587JTD/@@download/ENCFF587JTD.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF962GXO bam alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSP, ENCFF806TVZ 1064291732 ENCODE Processing Pipeline 035b210c356997d0d1044e235218e819 https://www.encodeproject.org/files/ENCFF962GXO/@@download/ENCFF962GXO.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF154FUN bigBed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF906JFE 3059578 ENCODE Processing Pipeline beff677f10fcf34fc4bca5d832543110 https://www.encodeproject.org/files/ENCFF154FUN/@@download/ENCFF154FUN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF580HZY bigBed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF520JOW 3244123 ENCODE Processing Pipeline dee87c918241f9406f3a81c3d5dd2c31 https://www.encodeproject.org/files/ENCFF580HZY/@@download/ENCFF580HZY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF906JFE bed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF962GXO 1291690 ENCODE Processing Pipeline 90ebb75e0bcbe88fb1a77d5b17a8170c https://www.encodeproject.org/files/ENCFF906JFE/@@download/ENCFF906JFE.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF520JOW bed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF587JTD, ENCFF962GXO 1080492 ENCODE Processing Pipeline 496ab8bb35efe1afae7d9aa1045ad578 https://www.encodeproject.org/files/ENCFF520JOW/@@download/ENCFF520JOW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF603BIM bed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF587JTD 1391721 ENCODE Processing Pipeline 06e078bb9ad77a2eca508125ec1cc3cb https://www.encodeproject.org/files/ENCFF603BIM/@@download/ENCFF603BIM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF565QDT bigBed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF603BIM 3319471 ENCODE Processing Pipeline 13b0baa7fd21383465d9d9bd457d297e https://www.encodeproject.org/files/ENCFF565QDT/@@download/ENCFF565QDT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF656WMT bigWig signal p-value ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF962GXO 415522209 ENCODE Processing Pipeline fb18bbd5be1136fd6188e2bf1a96654b https://www.encodeproject.org/files/ENCFF656WMT/@@download/ENCFF656WMT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF812ENM bigWig signal p-value ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF587JTD 366296212 ENCODE Processing Pipeline 6effaee7f1a7d173492613a1089a9c71 https://www.encodeproject.org/files/ENCFF812ENM/@@download/ENCFF812ENM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF578KCK bigWig fold change over control ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF962GXO 478341449 ENCODE Processing Pipeline 1c463ed7d5a45096442533df94a1879f https://www.encodeproject.org/files/ENCFF578KCK/@@download/ENCFF578KCK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF164EUR bigWig signal p-value ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF587JTD, ENCFF962GXO 573592535 ENCODE Processing Pipeline acf3fdc79eb3eca3677d33cf1ea396d5 https://www.encodeproject.org/files/ENCFF164EUR/@@download/ENCFF164EUR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF510ACV bigWig fold change over control ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF587JTD 378524039 ENCODE Processing Pipeline b55232cd57d711795d5aa4c41d229df7 https://www.encodeproject.org/files/ENCFF510ACV/@@download/ENCFF510ACV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF566QUO bigWig fold change over control ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF587JTD, ENCFF962GXO 699804159 ENCODE Processing Pipeline d0c9de7161d82e2cf518a64d67d445b3 https://www.encodeproject.org/files/ENCFF566QUO/@@download/ENCFF566QUO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF922SLC bed narrowPeak replicated peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF520JOW, ENCFF603BIM, ENCFF906JFE 995838 ENCODE Processing Pipeline 10e2be34de01dfc754515fd6bd32abab https://www.encodeproject.org/files/ENCFF922SLC/@@download/ENCFF922SLC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF514BMJ bigBed narrowPeak replicated peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF922SLC 2380972 ENCODE Processing Pipeline 56c8d8aae37dcb1550a551718499cf80 https://www.encodeproject.org/files/ENCFF514BMJ/@@download/ENCFF514BMJ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF436LFR bam unfiltered alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSM, ENCFF018NEO 1186391119 ENCODE Processing Pipeline 546512bb5db1ac4b125e6dff80c0d491 https://www.encodeproject.org/files/ENCFF436LFR/@@download/ENCFF436LFR.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF005KBM bam alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSM, ENCFF018NEO 726437713 ENCODE Processing Pipeline 867c76cfff9239caa9ab99cbc7f3f02b https://www.encodeproject.org/files/ENCFF005KBM/@@download/ENCFF005KBM.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF183LGO bam unfiltered alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSP, ENCFF018NEO 1611600070 ENCODE Processing Pipeline 9e597ca784d6a083ad8efbd3418efc76 https://www.encodeproject.org/files/ENCFF183LGO/@@download/ENCFF183LGO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF954OIP bam alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSP, ENCFF018NEO 1064099555 ENCODE Processing Pipeline db3b998352a08d31358f5bda755231cd https://www.encodeproject.org/files/ENCFF954OIP/@@download/ENCFF954OIP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF670OKD bed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF886TCK, ENCFF954OIP 1279678 ENCODE Processing Pipeline 4202a287205bb020dc2c6474f5cd7a31 https://www.encodeproject.org/files/ENCFF670OKD/@@download/ENCFF670OKD.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF764XSB bed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF005KBM, ENCFF856WFI, ENCFF886TCK 1391802 ENCODE Processing Pipeline 51e70653bd75dc11108eee91a2236964 https://www.encodeproject.org/files/ENCFF764XSB/@@download/ENCFF764XSB.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF185AKH bed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005KBM, ENCFF856WFI, ENCFF886TCK, ENCFF954OIP 1059880 ENCODE Processing Pipeline 05f2a868d8182b97d5e99afb9cd1dd4d https://www.encodeproject.org/files/ENCFF185AKH/@@download/ENCFF185AKH.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF214CUA bigBed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF670OKD 3036119 ENCODE Processing Pipeline 560feba0b6ada5d56631ce63dbb141e9 https://www.encodeproject.org/files/ENCFF214CUA/@@download/ENCFF214CUA.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF881MBD bigBed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF764XSB 3319888 ENCODE Processing Pipeline 34a10724bdf0360f9c2da683d7ded332 https://www.encodeproject.org/files/ENCFF881MBD/@@download/ENCFF881MBD.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF151MBR bigBed narrowPeak peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185AKH 3185174 ENCODE Processing Pipeline 9448e6bf63cffbd0273cbc5c251d9b7b https://www.encodeproject.org/files/ENCFF151MBR/@@download/ENCFF151MBR.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF591UJN bigWig signal p-value ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF886TCK, ENCFF954OIP 415920093 ENCODE Processing Pipeline 83f9a7d76779a72f396dbdaf0cd24973 https://www.encodeproject.org/files/ENCFF591UJN/@@download/ENCFF591UJN.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF339SGK bigWig signal p-value ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF005KBM, ENCFF856WFI, ENCFF886TCK 405722986 ENCODE Processing Pipeline 6e919c3cd4276dc181f05e0b986d79a6 https://www.encodeproject.org/files/ENCFF339SGK/@@download/ENCFF339SGK.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF372ZGW bigWig signal p-value ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005KBM, ENCFF856WFI, ENCFF886TCK, ENCFF954OIP 567723732 ENCODE Processing Pipeline b239b9ce5f62eea2e63da120b5679caa https://www.encodeproject.org/files/ENCFF372ZGW/@@download/ENCFF372ZGW.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF419LGS bigWig fold change over control ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF886TCK, ENCFF954OIP 475493577 ENCODE Processing Pipeline 1d0836da329037ef75ae61bd8cda20a4 https://www.encodeproject.org/files/ENCFF419LGS/@@download/ENCFF419LGS.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF881SAW bigWig fold change over control ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF005KBM, ENCFF856WFI, ENCFF886TCK 378545341 ENCODE Processing Pipeline 32f7c463901ea9a11fb5a6a6218eb99e https://www.encodeproject.org/files/ENCFF881SAW/@@download/ENCFF881SAW.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF702AEO bigWig fold change over control ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005KBM, ENCFF856WFI, ENCFF886TCK, ENCFF954OIP 691964763 ENCODE Processing Pipeline 8aa99f8a8b6682030f6c4110b7d017dd https://www.encodeproject.org/files/ENCFF702AEO/@@download/ENCFF702AEO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF785EGA bed narrowPeak replicated peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185AKH, ENCFF670OKD, ENCFF764XSB 985558 ENCODE Processing Pipeline 390e375f33533b20e4645e2773594b5c https://www.encodeproject.org/files/ENCFF785EGA/@@download/ENCFF785EGA.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF578RST bigBed narrowPeak replicated peaks ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF785EGA 2371360 ENCODE Processing Pipeline ce74ca1189ac0215191d872014386aad https://www.encodeproject.org/files/ENCFF578RST/@@download/ENCFF578RST.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF002AGM fastq reads ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1194137602 Bing Ren, UCSD 1a252e73a966bab64ba7ee29f67e665c SRA:SRR3651317 https://www.encodeproject.org/files/ENCFF002AGM/@@download/ENCFF002AGM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AGU fastq reads ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1905396540 Bing Ren, UCSD 5c7cc8fcff08bdc20c0e02da13386c89 SRA:SRR3651319 https://www.encodeproject.org/files/ENCFF002AGU/@@download/ENCFF002AGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQN/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF424ZHJ bam alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGU, ENCFF806TVZ 1448942045 ENCODE Processing Pipeline c0fbc6ee1dc5f35aa845354a7d046f6b https://www.encodeproject.org/files/ENCFF424ZHJ/@@download/ENCFF424ZHJ.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF283XLO fastq reads ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 361187447 Bing Ren, UCSD 2c319d56301e43ed58726f6cf84a17fc SRA:SRR3651318 https://www.encodeproject.org/files/ENCFF283XLO/@@download/ENCFF283XLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF375BGI bam alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGM, ENCFF283XLO, ENCFF806TVZ 1260200150 ENCODE Processing Pipeline 481f3ba53092afb91dfc581b609abea4 https://www.encodeproject.org/files/ENCFF375BGI/@@download/ENCFF375BGI.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF044PHA bed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF375BGI, ENCFF576KAS 540053 ENCODE Processing Pipeline e9c22739ddbfd687963943d6506e19f9 https://www.encodeproject.org/files/ENCFF044PHA/@@download/ENCFF044PHA.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF403MOC bigBed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF595ODT 871868 ENCODE Processing Pipeline 95c4b7054b1a61fad3c9549a1403fbd8 https://www.encodeproject.org/files/ENCFF403MOC/@@download/ENCFF403MOC.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF280IAS bigWig signal p-value ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF375BGI, ENCFF424ZHJ, ENCFF576KAS 766217020 ENCODE Processing Pipeline b1887a83ede68027f99b2ccf4b32019f https://www.encodeproject.org/files/ENCFF280IAS/@@download/ENCFF280IAS.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF595ODT bed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF375BGI, ENCFF424ZHJ, ENCFF576KAS 381478 ENCODE Processing Pipeline cc427a6d6e5ca72b3886f6524d05d805 https://www.encodeproject.org/files/ENCFF595ODT/@@download/ENCFF595ODT.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF466VPZ bigWig signal p-value ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF375BGI, ENCFF576KAS 430241643 ENCODE Processing Pipeline fb77033f24071802b1c4b766bd58ac3a https://www.encodeproject.org/files/ENCFF466VPZ/@@download/ENCFF466VPZ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF854BJI bed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF424ZHJ, ENCFF576KAS 483504 ENCODE Processing Pipeline 9de7e41b35828b27e5384f1e9aea7d80 https://www.encodeproject.org/files/ENCFF854BJI/@@download/ENCFF854BJI.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF950QVR bigBed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF044PHA 1342933 ENCODE Processing Pipeline a4884134c3423cee320f054e97b1f246 https://www.encodeproject.org/files/ENCFF950QVR/@@download/ENCFF950QVR.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF903CZO bigWig fold change over control ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF375BGI, ENCFF576KAS 531483581 ENCODE Processing Pipeline 48d7538a4311861d78fb0e2b92abceac https://www.encodeproject.org/files/ENCFF903CZO/@@download/ENCFF903CZO.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF478ATY bigWig fold change over control ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF375BGI, ENCFF424ZHJ, ENCFF576KAS 891283829 ENCODE Processing Pipeline e38d64a290fd79504b7e314b4178142c https://www.encodeproject.org/files/ENCFF478ATY/@@download/ENCFF478ATY.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF857KHS bed narrowPeak replicated peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF044PHA, ENCFF595ODT, ENCFF854BJI 236060 ENCODE Processing Pipeline 26517d6dba81fe26d63a1f18b9d94a9f https://www.encodeproject.org/files/ENCFF857KHS/@@download/ENCFF857KHS.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF478OKG bigBed narrowPeak replicated peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF857KHS 631577 ENCODE Processing Pipeline 4641f6c58abb0a741a90580e7c8656cd https://www.encodeproject.org/files/ENCFF478OKG/@@download/ENCFF478OKG.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF328YSP bam unfiltered alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGU, ENCFF018NEO 1632846928 ENCODE Processing Pipeline 5a11327fa1d785685984aa97b9fbbd8d https://www.encodeproject.org/files/ENCFF328YSP/@@download/ENCFF328YSP.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF492TQK bam unfiltered alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGM, ENCFF018NEO, ENCFF283XLO 1690098658 ENCODE Processing Pipeline 2a7c3a99caee49f6a57e82f48e1938ec https://www.encodeproject.org/files/ENCFF492TQK/@@download/ENCFF492TQK.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF939UPO bam alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGM, ENCFF018NEO, ENCFF283XLO 1162490137 ENCODE Processing Pipeline caddc9f886f828021062500a61616465 https://www.encodeproject.org/files/ENCFF939UPO/@@download/ENCFF939UPO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF595ECC bam alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGU, ENCFF018NEO 1116788365 ENCODE Processing Pipeline 0768f7b6ce6ff9219999d2aa0eaa25e7 https://www.encodeproject.org/files/ENCFF595ECC/@@download/ENCFF595ECC.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF515WCJ bed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF595ECC 180351 ENCODE Processing Pipeline f663dad875d859168483a3dd80213e11 https://www.encodeproject.org/files/ENCFF515WCJ/@@download/ENCFF515WCJ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF800MPW bigBed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF515WCJ 454006 ENCODE Processing Pipeline 32bdd745e7809ccd7946e51f12d7f9f2 https://www.encodeproject.org/files/ENCFF800MPW/@@download/ENCFF800MPW.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF513FIG bigWig signal p-value ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF595ECC 389147886 ENCODE Processing Pipeline d09ccfb308fe455d9141c7091083c3c4 https://www.encodeproject.org/files/ENCFF513FIG/@@download/ENCFF513FIG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF518ZBX bigWig fold change over control ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF595ECC 447497991 ENCODE Processing Pipeline a58a5ec99f10b783a442bf56a6af3517 https://www.encodeproject.org/files/ENCFF518ZBX/@@download/ENCFF518ZBX.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF971VBR bed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF939UPO 529555 ENCODE Processing Pipeline a78b72b38228a7d973267ba31415dac7 https://www.encodeproject.org/files/ENCFF971VBR/@@download/ENCFF971VBR.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF730SLU bigWig signal p-value ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF939UPO 433580581 ENCODE Processing Pipeline cd85aa5284d393e46cf34d67e90c5ab0 https://www.encodeproject.org/files/ENCFF730SLU/@@download/ENCFF730SLU.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF631XIU bigBed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF530JZD 823978 ENCODE Processing Pipeline 7896aaa19b9d5c16b4e0386d6a01ed39 https://www.encodeproject.org/files/ENCFF631XIU/@@download/ENCFF631XIU.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF809NWW bigBed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF971VBR 1320858 ENCODE Processing Pipeline 8dcc668a97b1342ea18f9abb82614ead https://www.encodeproject.org/files/ENCFF809NWW/@@download/ENCFF809NWW.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF530JZD bed narrowPeak peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF595ECC, ENCFF939UPO 359810 ENCODE Processing Pipeline 294de804798b7a59d506df2230573454 https://www.encodeproject.org/files/ENCFF530JZD/@@download/ENCFF530JZD.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF579HTG bigWig signal p-value ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF595ECC, ENCFF939UPO 712145945 ENCODE Processing Pipeline 236bab848b0471e91f9063a136808b9c https://www.encodeproject.org/files/ENCFF579HTG/@@download/ENCFF579HTG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF115DFT bigWig fold change over control ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF939UPO 524319466 ENCODE Processing Pipeline 074f563622a34ade6413ee69c8395e43 https://www.encodeproject.org/files/ENCFF115DFT/@@download/ENCFF115DFT.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF518FTX bigWig fold change over control ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF595ECC, ENCFF939UPO 826012067 ENCODE Processing Pipeline 725e84ed2b3a83f652c2f66bbc97bf6d https://www.encodeproject.org/files/ENCFF518FTX/@@download/ENCFF518FTX.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF066RLS bed narrowPeak replicated peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF515WCJ, ENCFF530JZD, ENCFF971VBR 208143 ENCODE Processing Pipeline cabe25bf4206c5406d42a9259cf45e9d https://www.encodeproject.org/files/ENCFF066RLS/@@download/ENCFF066RLS.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF649OWG bigBed narrowPeak replicated peaks ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066RLS 567229 ENCODE Processing Pipeline 0f44b973c9f5ec0c8ae4eef08ec197ba https://www.encodeproject.org/files/ENCFF649OWG/@@download/ENCFF649OWG.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZTO fastq reads ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1025438938 Bing Ren, UCSD e9856d3a95304bd5af6a14829555a8dd SRA:SRR3651337 https://www.encodeproject.org/files/ENCFF001ZTO/@@download/ENCFF001ZTO.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZTP fastq reads ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1083744691 Bing Ren, UCSD e61e1c12961b11f8f9845f7abac53ebd SRA:SRR3651339 https://www.encodeproject.org/files/ENCFF001ZTP/@@download/ENCFF001ZTP.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF593ZTR fastq reads ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 850114305 Bing Ren, UCSD 5f2a2b2802bb11b26f9cb742dabc5669 SRA:SRR3651338 https://www.encodeproject.org/files/ENCFF593ZTR/@@download/ENCFF593ZTR.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF537APL fastq reads ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 476647316 Bing Ren, UCSD 2b9067e26f510917eff8f64c178106ed SRA:SRR3651340 https://www.encodeproject.org/files/ENCFF537APL/@@download/ENCFF537APL.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF280TQY bam alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTP, ENCFF537APL, ENCFF806TVZ 1304868149 ENCODE Processing Pipeline 076a3560b6f12994afa5323f0a24988f https://www.encodeproject.org/files/ENCFF280TQY/@@download/ENCFF280TQY.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF651MUL bam alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTO, ENCFF593ZTR, ENCFF806TVZ 1413247360 ENCODE Processing Pipeline d7edc91c507b1867519c48b84089a656 https://www.encodeproject.org/files/ENCFF651MUL/@@download/ENCFF651MUL.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF083FIM bigBed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF633QXH 1261012 ENCODE Processing Pipeline 564cc698beeebe0fdab2779f9ec35e8c https://www.encodeproject.org/files/ENCFF083FIM/@@download/ENCFF083FIM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF633QXH bed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF651MUL, ENCFF976TWF 531679 ENCODE Processing Pipeline 00be2ef12656cbe514e067f293612846 https://www.encodeproject.org/files/ENCFF633QXH/@@download/ENCFF633QXH.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF765NHG bigBed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF891SPX 1990319 ENCODE Processing Pipeline c02af2e0cc8970d11e0c0ef11405859b https://www.encodeproject.org/files/ENCFF765NHG/@@download/ENCFF765NHG.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF822OQN bigBed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF306FHO 1306485 ENCODE Processing Pipeline 9312d9bcb562ef6c4a51186fce5ece65 https://www.encodeproject.org/files/ENCFF822OQN/@@download/ENCFF822OQN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF891SPX bed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF280TQY, ENCFF976TWF 918306 ENCODE Processing Pipeline 937ae61b61bb330313c7498721fd8ddd https://www.encodeproject.org/files/ENCFF891SPX/@@download/ENCFF891SPX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF306FHO bed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF280TQY, ENCFF651MUL, ENCFF976TWF 484607 ENCODE Processing Pipeline 01d7bd2f87595b2ba56c78880ae19e0f https://www.encodeproject.org/files/ENCFF306FHO/@@download/ENCFF306FHO.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF413MSX bigWig signal p-value ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF651MUL, ENCFF976TWF 516586269 ENCODE Processing Pipeline 79b277d8a0563b4c8daeeb3e39920681 https://www.encodeproject.org/files/ENCFF413MSX/@@download/ENCFF413MSX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF017WPH bigWig signal p-value ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF280TQY, ENCFF976TWF 431350021 ENCODE Processing Pipeline 5c8a25514e284e3abc1c5f18f85afd86 https://www.encodeproject.org/files/ENCFF017WPH/@@download/ENCFF017WPH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF634BIL bigWig signal p-value ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF280TQY, ENCFF651MUL, ENCFF976TWF 526576566 ENCODE Processing Pipeline e1a77e9604d4b12527a49a3e183d2f01 https://www.encodeproject.org/files/ENCFF634BIL/@@download/ENCFF634BIL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF524DYG bigWig fold change over control ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF651MUL, ENCFF976TWF 512505210 ENCODE Processing Pipeline 2f553368ecbcd307947b2760ab0870c3 https://www.encodeproject.org/files/ENCFF524DYG/@@download/ENCFF524DYG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF290PAE bed narrowPeak replicated peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF306FHO, ENCFF633QXH, ENCFF891SPX 422789 ENCODE Processing Pipeline 403225054c7c8f2ded5899b9722c6a9c https://www.encodeproject.org/files/ENCFF290PAE/@@download/ENCFF290PAE.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF649QPN bigWig fold change over control ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF280TQY, ENCFF976TWF 488499517 ENCODE Processing Pipeline ebd5574370496b87083bd9a6152cf399 https://www.encodeproject.org/files/ENCFF649QPN/@@download/ENCFF649QPN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF439XMU bigWig fold change over control ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF280TQY, ENCFF651MUL, ENCFF976TWF 808770449 ENCODE Processing Pipeline 4535f4559349dbd14b0e62de8b0866d8 https://www.encodeproject.org/files/ENCFF439XMU/@@download/ENCFF439XMU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002FJD bigBed narrowPeak replicated peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290PAE 1016596 ENCODE Processing Pipeline be81dc3cd9d67ecd75d2d16da8555ae2 https://www.encodeproject.org/files/ENCFF002FJD/@@download/ENCFF002FJD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF220AOU bam unfiltered alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTP, ENCFF018NEO, ENCFF537APL 1889367304 ENCODE Processing Pipeline 91f0789d8a3f98510a55676d0fa7d0e1 https://www.encodeproject.org/files/ENCFF220AOU/@@download/ENCFF220AOU.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF954KYR bam unfiltered alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTO, ENCFF018NEO, ENCFF593ZTR 2158099670 ENCODE Processing Pipeline 23c4eaeb69f9e87e92fd0bbf3eb5d338 https://www.encodeproject.org/files/ENCFF954KYR/@@download/ENCFF954KYR.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF425GXY bam alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTP, ENCFF018NEO, ENCFF537APL 1190003754 ENCODE Processing Pipeline 290c35206f1659437af62976c3480f18 https://www.encodeproject.org/files/ENCFF425GXY/@@download/ENCFF425GXY.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830COJ bam alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTO, ENCFF018NEO, ENCFF593ZTR 1231389346 ENCODE Processing Pipeline 2da24e786d2fe360ad76888e75542ba2 https://www.encodeproject.org/files/ENCFF830COJ/@@download/ENCFF830COJ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF521YFG bed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF830COJ, ENCFF903TSE 862709 ENCODE Processing Pipeline 6e4bbcc724f5629fa7775b297025ad79 https://www.encodeproject.org/files/ENCFF521YFG/@@download/ENCFF521YFG.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF025RFY bed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF425GXY, ENCFF563TGK, ENCFF903TSE 902364 ENCODE Processing Pipeline 8efc825692e83d1e6a914d44f5d601b5 https://www.encodeproject.org/files/ENCFF025RFY/@@download/ENCFF025RFY.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF010RRX bed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF425GXY, ENCFF563TGK, ENCFF830COJ, ENCFF903TSE 478992 ENCODE Processing Pipeline 4ec32b7005e7d58a29a246c179943596 https://www.encodeproject.org/files/ENCFF010RRX/@@download/ENCFF010RRX.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF340AGZ bigBed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF521YFG 2058900 ENCODE Processing Pipeline fc9231bcaaa5b40b9a27cdb1ed539f4a https://www.encodeproject.org/files/ENCFF340AGZ/@@download/ENCFF340AGZ.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF051AMD bigBed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025RFY 1953401 ENCODE Processing Pipeline 6e3af02a9261cb0a889a6c69eafa512b https://www.encodeproject.org/files/ENCFF051AMD/@@download/ENCFF051AMD.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF795YVH bigBed narrowPeak peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010RRX 1292402 ENCODE Processing Pipeline a89377780ce6f2218756796fdfbe274b https://www.encodeproject.org/files/ENCFF795YVH/@@download/ENCFF795YVH.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF870HBU bigWig signal p-value ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF830COJ, ENCFF903TSE 496962925 ENCODE Processing Pipeline c5b1bd3a63ad6c6187f1c5c8711e9b0e https://www.encodeproject.org/files/ENCFF870HBU/@@download/ENCFF870HBU.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF847YTZ bigWig signal p-value ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF425GXY, ENCFF563TGK, ENCFF903TSE 441264148 ENCODE Processing Pipeline 56cc5856f8754ec2202e0c3e229400cd https://www.encodeproject.org/files/ENCFF847YTZ/@@download/ENCFF847YTZ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF279AUX bigWig fold change over control ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF830COJ, ENCFF903TSE 500009014 ENCODE Processing Pipeline 7dd944e51892bcac00cc4374060a29b1 https://www.encodeproject.org/files/ENCFF279AUX/@@download/ENCFF279AUX.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF126ZAB bigWig signal p-value ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF425GXY, ENCFF563TGK, ENCFF830COJ, ENCFF903TSE 524948539 ENCODE Processing Pipeline 28e331c0b241d889d9741bd23933038c https://www.encodeproject.org/files/ENCFF126ZAB/@@download/ENCFF126ZAB.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF598TJN bigWig fold change over control ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF425GXY, ENCFF563TGK, ENCFF903TSE 473775561 ENCODE Processing Pipeline c49040aafa1ccec9eea85e4fb720aa32 https://www.encodeproject.org/files/ENCFF598TJN/@@download/ENCFF598TJN.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF731BDW bigWig fold change over control ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF425GXY, ENCFF563TGK, ENCFF830COJ, ENCFF903TSE 801137399 ENCODE Processing Pipeline d4b401bfac79b390df954a995132d640 https://www.encodeproject.org/files/ENCFF731BDW/@@download/ENCFF731BDW.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF201XDM bed narrowPeak replicated peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010RRX, ENCFF025RFY, ENCFF521YFG 453158 ENCODE Processing Pipeline 835f3c23f2c1670a724580a134b9c091 https://www.encodeproject.org/files/ENCFF201XDM/@@download/ENCFF201XDM.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF707LHZ bigBed narrowPeak replicated peaks ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF201XDM 1075217 ENCODE Processing Pipeline 2f0ff854badc2f88a690d67d6f797c3b https://www.encodeproject.org/files/ENCFF707LHZ/@@download/ENCFF707LHZ.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVR fastq reads ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 36 single-ended 873342460 Bing Ren, UCSD 71e7c6863696088809923b12edf8a2a9 SRA:SRR3651804 https://www.encodeproject.org/files/ENCFF002BVR/@@download/ENCFF002BVR.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVO fastq reads ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 1247908402 Bing Ren, UCSD 8e84967e3578469f3abf8114f7fbc1e7 SRA:SRR3651805 https://www.encodeproject.org/files/ENCFF002BVO/@@download/ENCFF002BVO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUX/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVX fastq reads ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 1917326740 Bing Ren, UCSD ca8f0516ce02bb8b62e93b73708fea2c SRA:SRR3651803 https://www.encodeproject.org/files/ENCFF002BVX/@@download/ENCFF002BVX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVB/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF587HIN bam alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002BVO, ENCFF002BVR, ENCFF806TVZ 1245076008 ENCODE Processing Pipeline 4e35fd8d38131e7b253e27961c8c5482 https://www.encodeproject.org/files/ENCFF587HIN/@@download/ENCFF587HIN.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF844OFY bam alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002BVX, ENCFF806TVZ 1169048637 ENCODE Processing Pipeline b12a952c9ede1b8a8e32327d278d0fed https://www.encodeproject.org/files/ENCFF844OFY/@@download/ENCFF844OFY.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF908MGD bigBed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF990LHI 439795 ENCODE Processing Pipeline ad1233539f46fc028bd56a07017cad20 https://www.encodeproject.org/files/ENCFF908MGD/@@download/ENCFF908MGD.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF147HGM bed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF587HIN, ENCFF656MYX, ENCFF844OFY, ENCFF844PWX 108887 ENCODE Processing Pipeline 0a9902922feb1698d83358fcb6d7259b https://www.encodeproject.org/files/ENCFF147HGM/@@download/ENCFF147HGM.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF593WLG bigWig signal p-value ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF587HIN, ENCFF656MYX, ENCFF844PWX 517024500 ENCODE Processing Pipeline d6ab3cbff29a87ecdf97910cc6f84889 https://www.encodeproject.org/files/ENCFF593WLG/@@download/ENCFF593WLG.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF990LHI bed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF587HIN, ENCFF656MYX, ENCFF844PWX 190421 ENCODE Processing Pipeline 90f13c8bc5a8bcc5f9c3d9adfd53e81d https://www.encodeproject.org/files/ENCFF990LHI/@@download/ENCFF990LHI.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF469ODX bed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF656MYX, ENCFF844OFY, ENCFF844PWX 396315 ENCODE Processing Pipeline 2f795b9e47c3a66a59ff98fe699ec096 https://www.encodeproject.org/files/ENCFF469ODX/@@download/ENCFF469ODX.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF160UJC bigBed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF469ODX 811790 ENCODE Processing Pipeline 0d18fd5ffeb223619450d9d7867c2dd4 https://www.encodeproject.org/files/ENCFF160UJC/@@download/ENCFF160UJC.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF840XSZ bigBed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF147HGM 318457 ENCODE Processing Pipeline 626fe694b2c4631839f55515f525532d https://www.encodeproject.org/files/ENCFF840XSZ/@@download/ENCFF840XSZ.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF400IVK bigWig signal p-value ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF656MYX, ENCFF844OFY, ENCFF844PWX 515901524 ENCODE Processing Pipeline 1b10fbc4c83f43e91c980d8911618369 https://www.encodeproject.org/files/ENCFF400IVK/@@download/ENCFF400IVK.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF214ZRF bigWig signal p-value ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF587HIN, ENCFF656MYX, ENCFF844OFY, ENCFF844PWX 521031540 ENCODE Processing Pipeline e2ca98bf4f11564b8d18325f986b8f5c https://www.encodeproject.org/files/ENCFF214ZRF/@@download/ENCFF214ZRF.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF238RHF bigWig fold change over control ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF656MYX, ENCFF844OFY, ENCFF844PWX 506605919 ENCODE Processing Pipeline 53c43e29e102ad05fa87fd5abf24a75f https://www.encodeproject.org/files/ENCFF238RHF/@@download/ENCFF238RHF.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF096XRE bigWig fold change over control ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF587HIN, ENCFF656MYX, ENCFF844PWX 518838368 ENCODE Processing Pipeline d280a913d3dec05877c8d24a15801f10 https://www.encodeproject.org/files/ENCFF096XRE/@@download/ENCFF096XRE.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF092WMT bigWig fold change over control ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF587HIN, ENCFF656MYX, ENCFF844OFY, ENCFF844PWX 821606427 ENCODE Processing Pipeline c65066d67fd87ca69e6f602f663b2377 https://www.encodeproject.org/files/ENCFF092WMT/@@download/ENCFF092WMT.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF914NJC bed narrowPeak replicated peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF147HGM, ENCFF469ODX, ENCFF990LHI 74627 ENCODE Processing Pipeline 0976078f73798f32d8ac2aebcdaf82e6 https://www.encodeproject.org/files/ENCFF914NJC/@@download/ENCFF914NJC.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF217AVD bigBed narrowPeak replicated peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF914NJC 232288 ENCODE Processing Pipeline f2b3637162f64f1ea7798f75d9b9302e https://www.encodeproject.org/files/ENCFF217AVD/@@download/ENCFF217AVD.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF602SQF bam unfiltered alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVO, ENCFF002BVR, ENCFF018NEO 2695507400 ENCODE Processing Pipeline fdb2a6ab500eef489007e7453f5fcd02 https://www.encodeproject.org/files/ENCFF602SQF/@@download/ENCFF602SQF.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF797YZH bam unfiltered alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVX, ENCFF018NEO 2452269072 ENCODE Processing Pipeline adfafa0697dcb787743221b5a08d6f56 https://www.encodeproject.org/files/ENCFF797YZH/@@download/ENCFF797YZH.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF886GLK bam alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVO, ENCFF002BVR, ENCFF018NEO 1244379623 ENCODE Processing Pipeline 61539b9f582d3a12ed5da1aa5ebd7d6e https://www.encodeproject.org/files/ENCFF886GLK/@@download/ENCFF886GLK.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF890VUY bam alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVX, ENCFF018NEO 1168328952 ENCODE Processing Pipeline 9b14c171b75fb9aece18d1b1a0b8af25 https://www.encodeproject.org/files/ENCFF890VUY/@@download/ENCFF890VUY.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF427BNE bed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF026JTV, ENCFF627JLU, ENCFF890VUY 355579 ENCODE Processing Pipeline 87fc40feba4cff28bb733a7faba2bd9b https://www.encodeproject.org/files/ENCFF427BNE/@@download/ENCFF427BNE.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF106EDJ bed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF886GLK 215748 ENCODE Processing Pipeline 8fef79b9daf81383385e4b28ec9119f4 https://www.encodeproject.org/files/ENCFF106EDJ/@@download/ENCFF106EDJ.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF957TVM bed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF026JTV, ENCFF627JLU, ENCFF886GLK, ENCFF890VUY 118768 ENCODE Processing Pipeline 40c5ac5647f6deb22edb123ce913c4d9 https://www.encodeproject.org/files/ENCFF957TVM/@@download/ENCFF957TVM.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF216IAG bigBed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF106EDJ 486647 ENCODE Processing Pipeline 42484b9042ad79cd2a41a324ab1bf53f https://www.encodeproject.org/files/ENCFF216IAG/@@download/ENCFF216IAG.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF502ZZA bigBed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF957TVM 341293 ENCODE Processing Pipeline a3cdb53d231498576c512686d801824d https://www.encodeproject.org/files/ENCFF502ZZA/@@download/ENCFF502ZZA.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF530FEC bigBed narrowPeak peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF427BNE 748606 ENCODE Processing Pipeline 0c5098e2f759044c295648abeedbfaf1 https://www.encodeproject.org/files/ENCFF530FEC/@@download/ENCFF530FEC.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF492QEO bigWig signal p-value ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF886GLK 529120258 ENCODE Processing Pipeline ad1d9b646aeb64410370a9354c780278 https://www.encodeproject.org/files/ENCFF492QEO/@@download/ENCFF492QEO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF735DRY bigWig signal p-value ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF026JTV, ENCFF627JLU, ENCFF890VUY 410268169 ENCODE Processing Pipeline 07e3a60810aef7cfe8a3c2189db7a31b https://www.encodeproject.org/files/ENCFF735DRY/@@download/ENCFF735DRY.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF798VZB bigWig signal p-value ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF026JTV, ENCFF627JLU, ENCFF886GLK, ENCFF890VUY 523938666 ENCODE Processing Pipeline 8b43c3a99a79d72995ce9c043e4e01dd https://www.encodeproject.org/files/ENCFF798VZB/@@download/ENCFF798VZB.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF424KZW bigWig fold change over control ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF886GLK 524158095 ENCODE Processing Pipeline dff8735f6b7444f875ee979a9ad8cb0d https://www.encodeproject.org/files/ENCFF424KZW/@@download/ENCFF424KZW.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF454INY bigWig fold change over control ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF026JTV, ENCFF627JLU, ENCFF890VUY 503465905 ENCODE Processing Pipeline b97fdb2941c235c0e2717276bef5f3e4 https://www.encodeproject.org/files/ENCFF454INY/@@download/ENCFF454INY.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF064HMK bed narrowPeak replicated peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF106EDJ, ENCFF427BNE, ENCFF957TVM 80343 ENCODE Processing Pipeline 211feaa5ecff21043a2c1ae18d053706 https://www.encodeproject.org/files/ENCFF064HMK/@@download/ENCFF064HMK.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF570FAF bigWig fold change over control ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF026JTV, ENCFF627JLU, ENCFF886GLK, ENCFF890VUY 826684901 ENCODE Processing Pipeline 55c3a27ea5788995f60a349da5678f93 https://www.encodeproject.org/files/ENCFF570FAF/@@download/ENCFF570FAF.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF654CYJ bigBed narrowPeak replicated peaks ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF064HMK 290842 ENCODE Processing Pipeline 3a4f8d15c71ed1b12254cd7365b59559 https://www.encodeproject.org/files/ENCFF654CYJ/@@download/ENCFF654CYJ.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF448GBA fastq reads ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2374856609 Bing Ren, UCSD 8e8d7d2186ee6e4481cd48737925bb10 SRA:SRR3652662 https://www.encodeproject.org/files/ENCFF448GBA/@@download/ENCFF448GBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF393EAJ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF249OHU fastq reads ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3008519436 Bing Ren, UCSD 9615edccd57b1f167011219653c55e6d SRA:SRR3652663 https://www.encodeproject.org/files/ENCFF249OHU/@@download/ENCFF249OHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF545UQA/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF443AKI bam alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF249OHU, ENCFF806TVZ 1908498201 ENCODE Processing Pipeline 029a6bb7db7d31281b7b4e32ca596d67 https://www.encodeproject.org/files/ENCFF443AKI/@@download/ENCFF443AKI.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF351OXP bam alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF448GBA, ENCFF806TVZ 1533840059 ENCODE Processing Pipeline 500ff897e0eec7a8e2bb4e3ef55af3e4 https://www.encodeproject.org/files/ENCFF351OXP/@@download/ENCFF351OXP.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF510EWE bed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF443AKI, ENCFF627MYB 1234832 ENCODE Processing Pipeline d4f3e8f2d51f54ebd1f4247a73279952 https://www.encodeproject.org/files/ENCFF510EWE/@@download/ENCFF510EWE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF454HKX bed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF351OXP, ENCFF371GCA 1143316 ENCODE Processing Pipeline 87df248147dc78909635d53d6a68b9bf https://www.encodeproject.org/files/ENCFF454HKX/@@download/ENCFF454HKX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF452LPA bed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF351OXP, ENCFF371GCA, ENCFF443AKI, ENCFF627MYB 1282485 ENCODE Processing Pipeline 4e4bc64f6f17d263471a390893f3417c https://www.encodeproject.org/files/ENCFF452LPA/@@download/ENCFF452LPA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF503XEL bigBed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF454HKX 3525780 ENCODE Processing Pipeline 767e5c3d8971090f2b2bc3d2dba3aaac https://www.encodeproject.org/files/ENCFF503XEL/@@download/ENCFF503XEL.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF838AMH bigBed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF452LPA 3873027 ENCODE Processing Pipeline 70e2b224af1131ee4ec185614f01afd7 https://www.encodeproject.org/files/ENCFF838AMH/@@download/ENCFF838AMH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF338ORT bigBed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF510EWE 3758981 ENCODE Processing Pipeline d1cf6ecb7bb4cb0fb1e3c7739c4a1a1a https://www.encodeproject.org/files/ENCFF338ORT/@@download/ENCFF338ORT.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF770EUL bigWig signal p-value ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF443AKI, ENCFF627MYB 693604029 ENCODE Processing Pipeline f09f25328e8457fd57a22de38b340668 https://www.encodeproject.org/files/ENCFF770EUL/@@download/ENCFF770EUL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF416SZM bigWig signal p-value ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF351OXP, ENCFF371GCA 500938978 ENCODE Processing Pipeline f7e44c83c1cbd441d8d4f28e62f87508 https://www.encodeproject.org/files/ENCFF416SZM/@@download/ENCFF416SZM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF293GBN bigWig signal p-value ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF351OXP, ENCFF371GCA, ENCFF443AKI, ENCFF627MYB 956521419 ENCODE Processing Pipeline b794bd973e4446a2246128c66eca9784 https://www.encodeproject.org/files/ENCFF293GBN/@@download/ENCFF293GBN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF134AMJ bigWig fold change over control ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF351OXP, ENCFF371GCA 466654734 ENCODE Processing Pipeline be253d3a2d99198cd8a6e233b31b5019 https://www.encodeproject.org/files/ENCFF134AMJ/@@download/ENCFF134AMJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF008FUK bigWig fold change over control ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF443AKI, ENCFF627MYB 683798493 ENCODE Processing Pipeline e506bb10fd31bcad6d2ab5a32187742c https://www.encodeproject.org/files/ENCFF008FUK/@@download/ENCFF008FUK.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF248LNA bed narrowPeak replicated peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF452LPA, ENCFF454HKX, ENCFF510EWE 1476479 ENCODE Processing Pipeline 02ec17578dc1e52fbcb632757e49c5c3 https://www.encodeproject.org/files/ENCFF248LNA/@@download/ENCFF248LNA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF892SLY bigWig fold change over control ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF351OXP, ENCFF371GCA, ENCFF443AKI, ENCFF627MYB 964659430 ENCODE Processing Pipeline a3325e4d16d67dd0ac815aff57fdb9f1 https://www.encodeproject.org/files/ENCFF892SLY/@@download/ENCFF892SLY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF480OTO bigBed narrowPeak replicated peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF248LNA 3188484 ENCODE Processing Pipeline 4aae4f39cd63003e12823ceccd77048e https://www.encodeproject.org/files/ENCFF480OTO/@@download/ENCFF480OTO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF542API bam unfiltered alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF448GBA 2533611320 ENCODE Processing Pipeline de8d720487e4a26dba513cd312552902 https://www.encodeproject.org/files/ENCFF542API/@@download/ENCFF542API.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF267RWW bam unfiltered alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF249OHU 3179168621 ENCODE Processing Pipeline 7b3b31cc6c9148d15df491bf6cfdc267 https://www.encodeproject.org/files/ENCFF267RWW/@@download/ENCFF267RWW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF594JSE bam alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF448GBA 1533697212 ENCODE Processing Pipeline 20d023a3597ec550b5b51b2200ed7e14 https://www.encodeproject.org/files/ENCFF594JSE/@@download/ENCFF594JSE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF782GWE bam alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF249OHU 1908326064 ENCODE Processing Pipeline bd844d6f16b0f83d81857e10cb8b9693 https://www.encodeproject.org/files/ENCFF782GWE/@@download/ENCFF782GWE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF487XCU bed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF782GWE, ENCFF884PDZ 1210528 ENCODE Processing Pipeline 88250035ccd20545a7c568bb1cc22a72 https://www.encodeproject.org/files/ENCFF487XCU/@@download/ENCFF487XCU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF554NAT bed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF594JSE 1154010 ENCODE Processing Pipeline f399afc299a1c769c7796f7827c8b628 https://www.encodeproject.org/files/ENCFF554NAT/@@download/ENCFF554NAT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF747JUU bed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF594JSE, ENCFF782GWE, ENCFF884PDZ 1334510 ENCODE Processing Pipeline 2287089f775247d67f4fb055dd70cf2a https://www.encodeproject.org/files/ENCFF747JUU/@@download/ENCFF747JUU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF505GYA bigBed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF487XCU 3706478 ENCODE Processing Pipeline 495eb36b4f7263421fc647e09309babb https://www.encodeproject.org/files/ENCFF505GYA/@@download/ENCFF505GYA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF709HBU bigBed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF554NAT 3566544 ENCODE Processing Pipeline 4bc8f96fbd9a1ca4b0b83011e381ccda https://www.encodeproject.org/files/ENCFF709HBU/@@download/ENCFF709HBU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF913UHZ bigBed narrowPeak peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF747JUU 3973767 ENCODE Processing Pipeline 5e268cd79f554721f86e7360988b2f12 https://www.encodeproject.org/files/ENCFF913UHZ/@@download/ENCFF913UHZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF082YQH bigWig signal p-value ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF782GWE, ENCFF884PDZ 522886259 ENCODE Processing Pipeline bed1fab8576a9cfe933a2c1050df52e0 https://www.encodeproject.org/files/ENCFF082YQH/@@download/ENCFF082YQH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF258TZV bigWig signal p-value ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF594JSE 529644662 ENCODE Processing Pipeline 484549d26dab69c951eb9360126bcf22 https://www.encodeproject.org/files/ENCFF258TZV/@@download/ENCFF258TZV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF553OFV bigWig signal p-value ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF594JSE, ENCFF782GWE, ENCFF884PDZ 1083429127 ENCODE Processing Pipeline 265e8423a05e8197043f55e5f18c5879 https://www.encodeproject.org/files/ENCFF553OFV/@@download/ENCFF553OFV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF240BNY bigWig fold change over control ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF782GWE, ENCFF884PDZ 597057364 ENCODE Processing Pipeline 28ea8f7309ef7448bf33dea05a0384d1 https://www.encodeproject.org/files/ENCFF240BNY/@@download/ENCFF240BNY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF631OQF bigWig fold change over control ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF594JSE 512084934 ENCODE Processing Pipeline 68dcf6cdd509587ae525a4f19df4d821 https://www.encodeproject.org/files/ENCFF631OQF/@@download/ENCFF631OQF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF019ABU bigWig fold change over control ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF594JSE, ENCFF782GWE, ENCFF884PDZ 1034579273 ENCODE Processing Pipeline f871e9cda5a91b69afec15fc3225654e https://www.encodeproject.org/files/ENCFF019ABU/@@download/ENCFF019ABU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF454NBK bed narrowPeak replicated peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF487XCU, ENCFF554NAT, ENCFF747JUU 1472344 ENCODE Processing Pipeline f750aa9560f2e3133f61e2bd42856a03 https://www.encodeproject.org/files/ENCFF454NBK/@@download/ENCFF454NBK.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF528EDD bigBed narrowPeak replicated peaks ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF454NBK 3167629 ENCODE Processing Pipeline 71f39ac9716293a12e5a40ab4e582cca https://www.encodeproject.org/files/ENCFF528EDD/@@download/ENCFF528EDD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF547KWQ fastq reads ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 3432944256 Bing Ren, UCSD 2f0de83438ddd0d89b492a666902b798 SRA:SRR3651797 https://www.encodeproject.org/files/ENCFF547KWQ/@@download/ENCFF547KWQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released moderate library complexity, mild to moderate bottlenecking ENCFF638IQR fastq reads ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 3306828018 Bing Ren, UCSD f846eddc9622e88f1cd1527a1278b7a9 SRA:SRR3651798 https://www.encodeproject.org/files/ENCFF638IQR/@@download/ENCFF638IQR.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released moderate library complexity, mild to moderate bottlenecking ENCFF540SSE bam alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF547KWQ, ENCFF806TVZ 2628994869 ENCODE Processing Pipeline 635fbc05150719c0bb91b8d365040c52 https://www.encodeproject.org/files/ENCFF540SSE/@@download/ENCFF540SSE.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF148OHE bam alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF638IQR, ENCFF806TVZ 2554543520 ENCODE Processing Pipeline 07dd77311c388551d6a36a6d333097b0 https://www.encodeproject.org/files/ENCFF148OHE/@@download/ENCFF148OHE.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF280FOY bed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF148OHE, ENCFF171GAD 2554192 ENCODE Processing Pipeline e1cdd84ce97700ab195f859a253bc1d8 https://www.encodeproject.org/files/ENCFF280FOY/@@download/ENCFF280FOY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF624FXM bigBed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF280FOY 5487603 ENCODE Processing Pipeline 2ba9b31ea6cd25dcd932833459d01150 https://www.encodeproject.org/files/ENCFF624FXM/@@download/ENCFF624FXM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF543UJR bed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF171GAD, ENCFF540SSE 2537502 ENCODE Processing Pipeline d020fea871c66f743823780f18c3d49a https://www.encodeproject.org/files/ENCFF543UJR/@@download/ENCFF543UJR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF483PDA bed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF148OHE, ENCFF171GAD, ENCFF540SSE 2544572 ENCODE Processing Pipeline c781c27f7a83370476cb2762dc0b2062 https://www.encodeproject.org/files/ENCFF483PDA/@@download/ENCFF483PDA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF320QCP bigBed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF543UJR 5599651 ENCODE Processing Pipeline 7d409c94741a952ee1700b177343d8a0 https://www.encodeproject.org/files/ENCFF320QCP/@@download/ENCFF320QCP.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF694DSW bigBed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF483PDA 5514345 ENCODE Processing Pipeline 03c8349afc0bb5ecff61e25619a53fba https://www.encodeproject.org/files/ENCFF694DSW/@@download/ENCFF694DSW.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF515LFG bigWig signal p-value ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF171GAD, ENCFF540SSE 1169687616 ENCODE Processing Pipeline 3af24f4bc4fc6da6d306d0edda56a97f https://www.encodeproject.org/files/ENCFF515LFG/@@download/ENCFF515LFG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF083PJI bigWig signal p-value ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF148OHE, ENCFF171GAD 945555182 ENCODE Processing Pipeline d1787f5d6e554c6b85d64ca5482c85a5 https://www.encodeproject.org/files/ENCFF083PJI/@@download/ENCFF083PJI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF253ZYJ bigWig signal p-value ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF148OHE, ENCFF171GAD, ENCFF540SSE 1689901867 ENCODE Processing Pipeline 7efec68025a7460618b0bd1d1e267f4f https://www.encodeproject.org/files/ENCFF253ZYJ/@@download/ENCFF253ZYJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF265ASM bigWig fold change over control ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF171GAD, ENCFF540SSE 1374705356 ENCODE Processing Pipeline 3306c7fdd5a1c80e15d850cede48eebb https://www.encodeproject.org/files/ENCFF265ASM/@@download/ENCFF265ASM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF850TYF bigWig fold change over control ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF148OHE, ENCFF171GAD 1039719730 ENCODE Processing Pipeline 499b750d9ba9a8018155acbd85b89427 https://www.encodeproject.org/files/ENCFF850TYF/@@download/ENCFF850TYF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF388PID bigWig fold change over control ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF148OHE, ENCFF171GAD, ENCFF540SSE 1880408772 ENCODE Processing Pipeline c8518de1b4cec152721649dc38fda7b2 https://www.encodeproject.org/files/ENCFF388PID/@@download/ENCFF388PID.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF787BYE bed narrowPeak replicated peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF280FOY, ENCFF483PDA, ENCFF543UJR 2641709 ENCODE Processing Pipeline 7f16a433a96eebcdda5ec2db7e198861 https://www.encodeproject.org/files/ENCFF787BYE/@@download/ENCFF787BYE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF812DGE bigBed narrowPeak replicated peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF787BYE 4215673 ENCODE Processing Pipeline 929b048915e9a1d40e63688094137459 https://www.encodeproject.org/files/ENCFF812DGE/@@download/ENCFF812DGE.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF685MQM bam unfiltered alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF547KWQ 4312554726 ENCODE Processing Pipeline 52b93f38c240ec344b9b1479b3dc5224 https://www.encodeproject.org/files/ENCFF685MQM/@@download/ENCFF685MQM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF962IPZ bam alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF547KWQ 2628513867 ENCODE Processing Pipeline c052ecc3f1d28ad900d5af93670f44ae https://www.encodeproject.org/files/ENCFF962IPZ/@@download/ENCFF962IPZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF066YYT bam unfiltered alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF638IQR 4109098836 ENCODE Processing Pipeline cce061c4583816d0823023f7df861def https://www.encodeproject.org/files/ENCFF066YYT/@@download/ENCFF066YYT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF513SBJ bam alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF638IQR 2554133200 ENCODE Processing Pipeline e033d75542fd7570d81a481daa42b4a3 https://www.encodeproject.org/files/ENCFF513SBJ/@@download/ENCFF513SBJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF295WED bed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF438RYK, ENCFF865QGZ, ENCFF962IPZ 2427575 ENCODE Processing Pipeline 2110f7519f9e8be9e01908ce6fd67e9a https://www.encodeproject.org/files/ENCFF295WED/@@download/ENCFF295WED.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF118LQW bed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF513SBJ 2323667 ENCODE Processing Pipeline e979aa829ca0d597e8dd15945efe48e9 https://www.encodeproject.org/files/ENCFF118LQW/@@download/ENCFF118LQW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF296RBW bigBed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF101OWE 5315322 ENCODE Processing Pipeline 04f556ff23f59384a59530f696e76aaa https://www.encodeproject.org/files/ENCFF296RBW/@@download/ENCFF296RBW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF101OWE bed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF438RYK, ENCFF513SBJ, ENCFF865QGZ, ENCFF962IPZ 2458355 ENCODE Processing Pipeline 63bfdc83804f1fc3267f861f89b79f5b https://www.encodeproject.org/files/ENCFF101OWE/@@download/ENCFF101OWE.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF860OWX bigBed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF295WED 5355734 ENCODE Processing Pipeline 05ae98291cae32b13aa837fbedde73c6 https://www.encodeproject.org/files/ENCFF860OWX/@@download/ENCFF860OWX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF468XBB bigBed narrowPeak peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF118LQW 5038440 ENCODE Processing Pipeline 6dcc86c110ab5ecfcde026c75aaa40c4 https://www.encodeproject.org/files/ENCFF468XBB/@@download/ENCFF468XBB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF641ALU bigWig signal p-value ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF438RYK, ENCFF865QGZ, ENCFF962IPZ 1314283029 ENCODE Processing Pipeline 0b4ef6499afbfa53b6a2cb5619d83f47 https://www.encodeproject.org/files/ENCFF641ALU/@@download/ENCFF641ALU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF770CQN bigWig signal p-value ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF513SBJ 968733750 ENCODE Processing Pipeline 92fb1b9b4e617b2113e0ff43198a070e https://www.encodeproject.org/files/ENCFF770CQN/@@download/ENCFF770CQN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF424QKE bigWig signal p-value ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF438RYK, ENCFF513SBJ, ENCFF865QGZ, ENCFF962IPZ 1663652302 ENCODE Processing Pipeline ab0747380539afd7facf6bde5e9281fc https://www.encodeproject.org/files/ENCFF424QKE/@@download/ENCFF424QKE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF527ZTX bigWig fold change over control ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF438RYK, ENCFF865QGZ, ENCFF962IPZ 1373607324 ENCODE Processing Pipeline 7090cced810aeefb440c873dfd77c025 https://www.encodeproject.org/files/ENCFF527ZTX/@@download/ENCFF527ZTX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF701JEO bigWig fold change over control ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF513SBJ 1078156119 ENCODE Processing Pipeline 0e884e3f59e6e33db58765d182ec00e1 https://www.encodeproject.org/files/ENCFF701JEO/@@download/ENCFF701JEO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF004EZJ bigWig fold change over control ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF438RYK, ENCFF513SBJ, ENCFF865QGZ, ENCFF962IPZ 1854853439 ENCODE Processing Pipeline 2ab525c582051f66275b55edf6ca3132 https://www.encodeproject.org/files/ENCFF004EZJ/@@download/ENCFF004EZJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF705VGD bed narrowPeak replicated peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF101OWE, ENCFF118LQW, ENCFF295WED 2551781 ENCODE Processing Pipeline b56c0776cf1faeb08688ebd432139395 https://www.encodeproject.org/files/ENCFF705VGD/@@download/ENCFF705VGD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF247ZOG bigBed narrowPeak replicated peaks ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF705VGD 4072881 ENCODE Processing Pipeline 27fbc8010856470e3e6d393c00859a00 https://www.encodeproject.org/files/ENCFF247ZOG/@@download/ENCFF247ZOG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001ZTD fastq reads ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1179452559 Bing Ren, UCSD 453c42f7322ceab939ca828c368e4465 SRA:SRR3652360 https://www.encodeproject.org/files/ENCFF001ZTD/@@download/ENCFF001ZTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVD/ released low read length, mild to moderate bottlenecking ENCFF001ZTG fastq reads ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1261037171 Bing Ren, UCSD 2bffce138968aa2329318d6154a3002d SRA:SRR3652359 https://www.encodeproject.org/files/ENCFF001ZTG/@@download/ENCFF001ZTG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUR/ released low read length, mild to moderate bottlenecking ENCFF396EQC bam alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTG, ENCFF806TVZ 1078184283 ENCODE Processing Pipeline 944757cfd05a79552b4948f38db8cd25 https://www.encodeproject.org/files/ENCFF396EQC/@@download/ENCFF396EQC.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF054OIO bam alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTD, ENCFF806TVZ 971463324 ENCODE Processing Pipeline 158c6c15eb5d6b8f5de913d532b393e5 https://www.encodeproject.org/files/ENCFF054OIO/@@download/ENCFF054OIO.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF461YZX bigBed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF603TPC 2064095 ENCODE Processing Pipeline 2de06ee84cb7f3da8f9e996cd17d90d7 https://www.encodeproject.org/files/ENCFF461YZX/@@download/ENCFF461YZX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF407KIQ bed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF396EQC, ENCFF657TOI 918948 ENCODE Processing Pipeline ceac054d3269bbebc391f67c4f6e9a0a https://www.encodeproject.org/files/ENCFF407KIQ/@@download/ENCFF407KIQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF559AVR bed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF054OIO, ENCFF066KEA, ENCFF657TOI 1073908 ENCODE Processing Pipeline 4323ac79525068ef85be6abfa734b18b https://www.encodeproject.org/files/ENCFF559AVR/@@download/ENCFF559AVR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF603TPC bed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF054OIO, ENCFF066KEA, ENCFF396EQC, ENCFF657TOI 639066 ENCODE Processing Pipeline a084548210b10b6afb2c9425321c06d7 https://www.encodeproject.org/files/ENCFF603TPC/@@download/ENCFF603TPC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF296LTU bigBed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF559AVR 2672408 ENCODE Processing Pipeline de72e41eeb9172aa1f45b63d3bb9b7fb https://www.encodeproject.org/files/ENCFF296LTU/@@download/ENCFF296LTU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF203NAR bigBed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF407KIQ 2330487 ENCODE Processing Pipeline 14f7a1631c4745ee5546492524cd60dc https://www.encodeproject.org/files/ENCFF203NAR/@@download/ENCFF203NAR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF335QHI bigWig signal p-value ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF396EQC, ENCFF657TOI 518459317 ENCODE Processing Pipeline fd4e26c31ead04f058b3f9bcd48fb123 https://www.encodeproject.org/files/ENCFF335QHI/@@download/ENCFF335QHI.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF281WLU bigWig signal p-value ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF054OIO, ENCFF066KEA, ENCFF657TOI 393601730 ENCODE Processing Pipeline b98fca7be8def23338353419b7d16abd https://www.encodeproject.org/files/ENCFF281WLU/@@download/ENCFF281WLU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF649ZBD bigWig signal p-value ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF054OIO, ENCFF066KEA, ENCFF396EQC, ENCFF657TOI 500497312 ENCODE Processing Pipeline 170415bc63191313921825e51499f80e https://www.encodeproject.org/files/ENCFF649ZBD/@@download/ENCFF649ZBD.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF858EFR bigWig fold change over control ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF396EQC, ENCFF657TOI 463741756 ENCODE Processing Pipeline 209d6af3f69e38d6e9796a584bbfca95 https://www.encodeproject.org/files/ENCFF858EFR/@@download/ENCFF858EFR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF789MSC bigWig fold change over control ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF054OIO, ENCFF066KEA, ENCFF657TOI 427064363 ENCODE Processing Pipeline 128e8d9312d5fd525b7047ff73453997 https://www.encodeproject.org/files/ENCFF789MSC/@@download/ENCFF789MSC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF806WGA bigWig fold change over control ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF054OIO, ENCFF066KEA, ENCFF396EQC, ENCFF657TOI 713595045 ENCODE Processing Pipeline 1847268ec46bf823cdc863836d3bd88f https://www.encodeproject.org/files/ENCFF806WGA/@@download/ENCFF806WGA.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF089YRA bed narrowPeak replicated peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF407KIQ, ENCFF559AVR, ENCFF603TPC 727001 ENCODE Processing Pipeline 010c2ec8469f8f8c194b8054fd52ad3d https://www.encodeproject.org/files/ENCFF089YRA/@@download/ENCFF089YRA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF096JIB bigBed narrowPeak replicated peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF089YRA 1847358 ENCODE Processing Pipeline aa9a2a6fd7853a397bb83c7b93745855 https://www.encodeproject.org/files/ENCFF096JIB/@@download/ENCFF096JIB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF180NXV bam unfiltered alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTG, ENCFF018NEO 1613289561 ENCODE Processing Pipeline 7ab175d79713c5df80aa0bb971f83dac https://www.encodeproject.org/files/ENCFF180NXV/@@download/ENCFF180NXV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF585VXH bam unfiltered alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTD, ENCFF018NEO 1504679230 ENCODE Processing Pipeline f923943c7deef154221df6840a51abf1 https://www.encodeproject.org/files/ENCFF585VXH/@@download/ENCFF585VXH.bam mm10 released low read length, mild to moderate bottlenecking ENCFF188DLK bam alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTG, ENCFF018NEO 1077951575 ENCODE Processing Pipeline 4578e5d6688bcc7a88925770df96086a https://www.encodeproject.org/files/ENCFF188DLK/@@download/ENCFF188DLK.bam mm10 released low read length, mild to moderate bottlenecking ENCFF641CMD bam alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTD, ENCFF018NEO 971258916 ENCODE Processing Pipeline e0890bbc7870a0346f36f2c9a68c0006 https://www.encodeproject.org/files/ENCFF641CMD/@@download/ENCFF641CMD.bam mm10 released low read length, mild to moderate bottlenecking ENCFF456ZZC bed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF188DLK, ENCFF735XMC 919255 ENCODE Processing Pipeline fea13a0b067d58d805462b2954f3c7a2 https://www.encodeproject.org/files/ENCFF456ZZC/@@download/ENCFF456ZZC.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF584XKV bed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF641CMD, ENCFF735XMC 1082650 ENCODE Processing Pipeline 74f7c478d73814012db1955de447d769 https://www.encodeproject.org/files/ENCFF584XKV/@@download/ENCFF584XKV.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF754XRN bed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF188DLK, ENCFF641CMD, ENCFF735XMC 641563 ENCODE Processing Pipeline 6ad6c28ae3877309aec6cbc4ae38ee6a https://www.encodeproject.org/files/ENCFF754XRN/@@download/ENCFF754XRN.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF508HHA bigBed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF456ZZC 2331800 ENCODE Processing Pipeline caca1e79dbb3f3f5caba1b822752d220 https://www.encodeproject.org/files/ENCFF508HHA/@@download/ENCFF508HHA.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF410HIG bigBed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF584XKV 2686031 ENCODE Processing Pipeline 6483ac9685620c69a07e1578f9c280b0 https://www.encodeproject.org/files/ENCFF410HIG/@@download/ENCFF410HIG.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF237QFS bigBed narrowPeak peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF754XRN 2070917 ENCODE Processing Pipeline b164e1a450d37aadb31cd1ceb0d62049 https://www.encodeproject.org/files/ENCFF237QFS/@@download/ENCFF237QFS.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF783EQY bigWig signal p-value ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF188DLK, ENCFF735XMC 472296111 ENCODE Processing Pipeline 22624084983517c28ff651c51f7382aa https://www.encodeproject.org/files/ENCFF783EQY/@@download/ENCFF783EQY.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF833MVV bigWig signal p-value ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF641CMD, ENCFF735XMC 355767855 ENCODE Processing Pipeline 6565427d652c4c479220ebae04ce8663 https://www.encodeproject.org/files/ENCFF833MVV/@@download/ENCFF833MVV.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF248HBC bigWig signal p-value ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF188DLK, ENCFF641CMD, ENCFF735XMC 505574914 ENCODE Processing Pipeline bc2ab497600608b13c69dc4f5af2b264 https://www.encodeproject.org/files/ENCFF248HBC/@@download/ENCFF248HBC.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF362FBP bigWig fold change over control ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF188DLK, ENCFF735XMC 462253989 ENCODE Processing Pipeline 7b90d29bceede4820c6187692fadc915 https://www.encodeproject.org/files/ENCFF362FBP/@@download/ENCFF362FBP.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF604VXA bigWig fold change over control ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF641CMD, ENCFF735XMC 429090218 ENCODE Processing Pipeline 7bedf3b261fa9239cd7530389ae80155 https://www.encodeproject.org/files/ENCFF604VXA/@@download/ENCFF604VXA.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF358FNS bigWig fold change over control ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF188DLK, ENCFF641CMD, ENCFF735XMC 715345435 ENCODE Processing Pipeline 31319cbc13e81e30ff4b6cb6478198a8 https://www.encodeproject.org/files/ENCFF358FNS/@@download/ENCFF358FNS.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF460EBT bed narrowPeak replicated peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF456ZZC, ENCFF584XKV, ENCFF754XRN 721063 ENCODE Processing Pipeline 354b7c539335da2d689e660487665908 https://www.encodeproject.org/files/ENCFF460EBT/@@download/ENCFF460EBT.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF398VUF bigBed narrowPeak replicated peaks ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF460EBT 1836264 ENCODE Processing Pipeline ef0fffe37b662873f679c016f18354bb https://www.encodeproject.org/files/ENCFF398VUF/@@download/ENCFF398VUF.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF366GOC fastq reads ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1568710533 Bing Ren, UCSD 9c4033efb050fdbc95308d32aef618fa SRA:SRR3652565 https://www.encodeproject.org/files/ENCFF366GOC/@@download/ENCFF366GOC.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/, /files/ENCFF961WKK/ released moderate library complexity, mild to moderate bottlenecking ENCFF060JQO fastq reads ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1445057815 Bing Ren, UCSD a5c38aff1f0abda29d187012038ac6cd SRA:SRR3652564 https://www.encodeproject.org/files/ENCFF060JQO/@@download/ENCFF060JQO.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released moderate library complexity, mild to moderate bottlenecking ENCFF449ROP bam alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF060JQO, ENCFF806TVZ 951164510 ENCODE Processing Pipeline 3453b87dc1c466440b13d0454e6d28e4 https://www.encodeproject.org/files/ENCFF449ROP/@@download/ENCFF449ROP.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF957AYT bam alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF366GOC, ENCFF806TVZ 1306766402 ENCODE Processing Pipeline 8d45d1873464aaa102f8485735423d26 https://www.encodeproject.org/files/ENCFF957AYT/@@download/ENCFF957AYT.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF308UCR bed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF449ROP 1136198 ENCODE Processing Pipeline 628b1cb064f07a2d78ab2e74302d11df https://www.encodeproject.org/files/ENCFF308UCR/@@download/ENCFF308UCR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF005MHV bigBed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF203XOS 3264092 ENCODE Processing Pipeline 54d61195cc81492f7f95a594cc04a41d https://www.encodeproject.org/files/ENCFF005MHV/@@download/ENCFF005MHV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF203XOS bed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF957AYT 1390964 ENCODE Processing Pipeline ba239fc15a6506e939cf98395ddd8a23 https://www.encodeproject.org/files/ENCFF203XOS/@@download/ENCFF203XOS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF233SSZ bigBed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF809WBS 3371998 ENCODE Processing Pipeline dec3bdf8e85c018889163e8a98b28bd5 https://www.encodeproject.org/files/ENCFF233SSZ/@@download/ENCFF233SSZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF997HPA bigWig signal p-value ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF957AYT 563673717 ENCODE Processing Pipeline b5936859019e95070cbdde88887d453b https://www.encodeproject.org/files/ENCFF997HPA/@@download/ENCFF997HPA.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF809WBS bed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF449ROP, ENCFF957AYT 1457289 ENCODE Processing Pipeline c1eb8dc2ef1c0de1b9b6b82a5e5874ee https://www.encodeproject.org/files/ENCFF809WBS/@@download/ENCFF809WBS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF829ARN bigBed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF308UCR 2869869 ENCODE Processing Pipeline 2d155eac4454c7387d4b2ecd281b6d11 https://www.encodeproject.org/files/ENCFF829ARN/@@download/ENCFF829ARN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF209WMM bigWig signal p-value ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF449ROP 546099508 ENCODE Processing Pipeline c3cacf69856f8c4bd019ca041e5e5a9f https://www.encodeproject.org/files/ENCFF209WMM/@@download/ENCFF209WMM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF818LFM bigWig signal p-value ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF449ROP, ENCFF957AYT 1016383415 ENCODE Processing Pipeline 8dee2e380e2c405161dc4f019053be1c https://www.encodeproject.org/files/ENCFF818LFM/@@download/ENCFF818LFM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF761OWU bigWig fold change over control ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF957AYT 620820607 ENCODE Processing Pipeline c0001c4905675fc151442faf59cd67ac https://www.encodeproject.org/files/ENCFF761OWU/@@download/ENCFF761OWU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF293JJA bigWig fold change over control ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF449ROP 510151700 ENCODE Processing Pipeline 8abcdbd9896b14f389fa29bf50ffa35c https://www.encodeproject.org/files/ENCFF293JJA/@@download/ENCFF293JJA.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF972ZJY bigWig fold change over control ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF449ROP, ENCFF957AYT 1072121706 ENCODE Processing Pipeline 582cee9f70a220eaf68b10858164132e https://www.encodeproject.org/files/ENCFF972ZJY/@@download/ENCFF972ZJY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF630VBV bed narrowPeak replicated peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF203XOS, ENCFF308UCR, ENCFF809WBS 707509 ENCODE Processing Pipeline 8caf26cddc53abc61a7b6c54517f17c7 https://www.encodeproject.org/files/ENCFF630VBV/@@download/ENCFF630VBV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF512HPY bigBed narrowPeak replicated peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF630VBV 1473585 ENCODE Processing Pipeline 306f6081559537ba8c6262c9f821c755 https://www.encodeproject.org/files/ENCFF512HPY/@@download/ENCFF512HPY.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF637JIT bam unfiltered alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF060JQO 1782866942 ENCODE Processing Pipeline a5ef06def9c5140868383807549ddbd6 https://www.encodeproject.org/files/ENCFF637JIT/@@download/ENCFF637JIT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF109BBO bam unfiltered alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF366GOC 2019654088 ENCODE Processing Pipeline 093e35c204385ce46bafb40a0bb29b78 https://www.encodeproject.org/files/ENCFF109BBO/@@download/ENCFF109BBO.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF809QLS bam alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF060JQO 950940290 ENCODE Processing Pipeline 4f8df77abc28986d243e9815e37b2ddd https://www.encodeproject.org/files/ENCFF809QLS/@@download/ENCFF809QLS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF470OWJ bam alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF366GOC 1306462556 ENCODE Processing Pipeline 7dd25b0e1fdbd0e0f977619cd3e5f599 https://www.encodeproject.org/files/ENCFF470OWJ/@@download/ENCFF470OWJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF254MMD bed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF470OWJ, ENCFF570IJH 1391212 ENCODE Processing Pipeline 0dbaa8644bffd73577ca26bb875392fd https://www.encodeproject.org/files/ENCFF254MMD/@@download/ENCFF254MMD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF681SYC bed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF809QLS 1136624 ENCODE Processing Pipeline 1b0182e1f417f204da4c5a42b647ad4e https://www.encodeproject.org/files/ENCFF681SYC/@@download/ENCFF681SYC.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF143WBA bed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF470OWJ, ENCFF570IJH, ENCFF809QLS 1397650 ENCODE Processing Pipeline 1b365aaeef50e055fc10fac50587d0b5 https://www.encodeproject.org/files/ENCFF143WBA/@@download/ENCFF143WBA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF558HFX bigBed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF254MMD 3267038 ENCODE Processing Pipeline 8100584bb3c9c78b5c80e93a28d3efb8 https://www.encodeproject.org/files/ENCFF558HFX/@@download/ENCFF558HFX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF844DVM bigBed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF681SYC 2870384 ENCODE Processing Pipeline f24f1aa623f4f640f263adc4b8c447d1 https://www.encodeproject.org/files/ENCFF844DVM/@@download/ENCFF844DVM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF702EAW bigBed narrowPeak peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF143WBA 3276691 ENCODE Processing Pipeline 3d3031183dcaf70f0d3c9e19317b7192 https://www.encodeproject.org/files/ENCFF702EAW/@@download/ENCFF702EAW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF388TQM bigWig signal p-value ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF470OWJ, ENCFF570IJH 618037527 ENCODE Processing Pipeline 635c15b1ca4797fb7c07679a3b0ebe95 https://www.encodeproject.org/files/ENCFF388TQM/@@download/ENCFF388TQM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF517RRB bigWig signal p-value ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF809QLS 514848306 ENCODE Processing Pipeline b73276c46da5a4a07273e4cd8fe02487 https://www.encodeproject.org/files/ENCFF517RRB/@@download/ENCFF517RRB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF358YOJ bigWig signal p-value ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF470OWJ, ENCFF570IJH, ENCFF809QLS 913473351 ENCODE Processing Pipeline d157b01ee19307e3372c67a03f84b0eb https://www.encodeproject.org/files/ENCFF358YOJ/@@download/ENCFF358YOJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF205ERR bigWig fold change over control ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF470OWJ, ENCFF570IJH 620817405 ENCODE Processing Pipeline 71b97eb96ba85af7a2cc4f12af8169e2 https://www.encodeproject.org/files/ENCFF205ERR/@@download/ENCFF205ERR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF893SUV bigWig fold change over control ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF809QLS 511540396 ENCODE Processing Pipeline 3ac5ddeea2ce26eb94ad59b9abc63dfc https://www.encodeproject.org/files/ENCFF893SUV/@@download/ENCFF893SUV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF750BCM bigWig fold change over control ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF470OWJ, ENCFF570IJH, ENCFF809QLS 1146592254 ENCODE Processing Pipeline f2a8cf2f7aa83859a70a1ff40d42d964 https://www.encodeproject.org/files/ENCFF750BCM/@@download/ENCFF750BCM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF482OCW bed narrowPeak replicated peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF143WBA, ENCFF254MMD, ENCFF681SYC 725213 ENCODE Processing Pipeline 0550eecdcde344a93a5840fc13b3afac https://www.encodeproject.org/files/ENCFF482OCW/@@download/ENCFF482OCW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF061IKB bigBed narrowPeak replicated peaks ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF482OCW 1878716 ENCODE Processing Pipeline 794cf85892595f068c7e3ad1d2513a2a https://www.encodeproject.org/files/ENCFF061IKB/@@download/ENCFF061IKB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF326UOO fastq reads ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2507597629 Bing Ren, UCSD f08884e1091eb33650b0a9bcf50725d2 SRA:SRR3651800 https://www.encodeproject.org/files/ENCFF326UOO/@@download/ENCFF326UOO.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released mild to moderate bottlenecking ENCFF811HJY fastq reads ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2264019271 Bing Ren, UCSD e6ec9fa788e3499eeb5cbf8ee9124e09 SRA:SRR3651799 https://www.encodeproject.org/files/ENCFF811HJY/@@download/ENCFF811HJY.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/, /files/ENCFF788YDC/ released mild to moderate bottlenecking ENCFF860ALD bam alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF326UOO, ENCFF806TVZ 2285626322 ENCODE Processing Pipeline 82a51e573d1ceac361947d90c202342e https://www.encodeproject.org/files/ENCFF860ALD/@@download/ENCFF860ALD.bam mm10-minimal archived mild to moderate bottlenecking ENCFF103JWB bam alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF811HJY 2147970755 ENCODE Processing Pipeline e6de9ba841dbf8711820e2dc94b16806 https://www.encodeproject.org/files/ENCFF103JWB/@@download/ENCFF103JWB.bam mm10-minimal archived mild to moderate bottlenecking ENCFF631TEB bed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF103JWB, ENCFF950FXV 1950998 ENCODE Processing Pipeline eb9c736cf97d7a5e350d7e0d8669f9a6 https://www.encodeproject.org/files/ENCFF631TEB/@@download/ENCFF631TEB.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF451AVP bed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF670KZF, ENCFF860ALD, ENCFF950FXV 2400355 ENCODE Processing Pipeline 7fe302bb3954bc0fd1360c665636f99f https://www.encodeproject.org/files/ENCFF451AVP/@@download/ENCFF451AVP.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF990FVC bed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF103JWB, ENCFF670KZF, ENCFF860ALD, ENCFF950FXV 2628642 ENCODE Processing Pipeline 77b236038aaeadba5f91230d6087f38b https://www.encodeproject.org/files/ENCFF990FVC/@@download/ENCFF990FVC.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF392RUC bigBed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF631TEB 3930790 ENCODE Processing Pipeline a12c72ce759f0e480866b11a80be0385 https://www.encodeproject.org/files/ENCFF392RUC/@@download/ENCFF392RUC.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF648GCY bigBed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF451AVP 4757420 ENCODE Processing Pipeline 997ee44e12cb5b2eca0bab4f02c782e3 https://www.encodeproject.org/files/ENCFF648GCY/@@download/ENCFF648GCY.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF559EXZ bigBed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF990FVC 5078780 ENCODE Processing Pipeline dd32220e5898cfe80b030eb7828cfee4 https://www.encodeproject.org/files/ENCFF559EXZ/@@download/ENCFF559EXZ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF464BUK bigWig signal p-value ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF103JWB, ENCFF950FXV 836789933 ENCODE Processing Pipeline b471ba0cf5322e13d1cb8a866176ce3f https://www.encodeproject.org/files/ENCFF464BUK/@@download/ENCFF464BUK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF501XOO bigWig signal p-value ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF670KZF, ENCFF860ALD, ENCFF950FXV 868953159 ENCODE Processing Pipeline 70da8d4e76d8b60eb2bb478fc45515ff https://www.encodeproject.org/files/ENCFF501XOO/@@download/ENCFF501XOO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF032LZC bigWig signal p-value ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF103JWB, ENCFF670KZF, ENCFF860ALD, ENCFF950FXV 1572941583 ENCODE Processing Pipeline cf6474a6dc7c722f7a11c2acc7de50e6 https://www.encodeproject.org/files/ENCFF032LZC/@@download/ENCFF032LZC.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF652IEJ bigWig fold change over control ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF103JWB, ENCFF950FXV 901347981 ENCODE Processing Pipeline ac452e5b80c21babd30aa18bb1aa6a86 https://www.encodeproject.org/files/ENCFF652IEJ/@@download/ENCFF652IEJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF360SIJ bigWig fold change over control ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF670KZF, ENCFF860ALD, ENCFF950FXV 1121166647 ENCODE Processing Pipeline c9137040f365834850fa9d6aa51ad6a9 https://www.encodeproject.org/files/ENCFF360SIJ/@@download/ENCFF360SIJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF572YXU bigWig fold change over control ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF103JWB, ENCFF670KZF, ENCFF860ALD, ENCFF950FXV 1603291054 ENCODE Processing Pipeline 254da63bb0eb03e68a334263fb6d57c7 https://www.encodeproject.org/files/ENCFF572YXU/@@download/ENCFF572YXU.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF839OFJ bed narrowPeak replicated peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF451AVP, ENCFF631TEB, ENCFF990FVC 1495157 ENCODE Processing Pipeline 842bdbcabe73fa9a88c1aaa49cf460d1 https://www.encodeproject.org/files/ENCFF839OFJ/@@download/ENCFF839OFJ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF540WEP bigBed narrowPeak replicated peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF839OFJ 3073800 ENCODE Processing Pipeline 317b21d832352027f534af862c890ba9 https://www.encodeproject.org/files/ENCFF540WEP/@@download/ENCFF540WEP.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF381BEH bam unfiltered alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF326UOO 3248069693 ENCODE Processing Pipeline 72c4349eb11695b170d8630acc58a597 https://www.encodeproject.org/files/ENCFF381BEH/@@download/ENCFF381BEH.bam mm10 released mild to moderate bottlenecking ENCFF588AUF bam unfiltered alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF811HJY 2993263294 ENCODE Processing Pipeline 10f120555d41384d3391bd75c9e2cd60 https://www.encodeproject.org/files/ENCFF588AUF/@@download/ENCFF588AUF.bam mm10 released mild to moderate bottlenecking ENCFF198HVF bam alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF326UOO 2285121757 ENCODE Processing Pipeline e21ef48752ef5e1856679dd1934fa57e https://www.encodeproject.org/files/ENCFF198HVF/@@download/ENCFF198HVF.bam mm10 released mild to moderate bottlenecking ENCFF092TYS bam alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF811HJY 2147486041 ENCODE Processing Pipeline e1dd7dabda231f0a72ce6fb782f9bd81 https://www.encodeproject.org/files/ENCFF092TYS/@@download/ENCFF092TYS.bam mm10 released mild to moderate bottlenecking ENCFF328SJI bed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF092TYS, ENCFF198HVF, ENCFF563KVK, ENCFF741BBU 2514776 ENCODE Processing Pipeline 08b86d5c13b66cb48ace6160e1cf8fa0 https://www.encodeproject.org/files/ENCFF328SJI/@@download/ENCFF328SJI.bed.gz mm10 released mild to moderate bottlenecking ENCFF443LHD bed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF198HVF, ENCFF563KVK, ENCFF741BBU 2856498 ENCODE Processing Pipeline 927b87044f4d6217f8f304a702b3d831 https://www.encodeproject.org/files/ENCFF443LHD/@@download/ENCFF443LHD.bed.gz mm10 released mild to moderate bottlenecking ENCFF853AGM bed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF092TYS, ENCFF563KVK 1819335 ENCODE Processing Pipeline 9282ba57d58c726603f9d27405f99dd9 https://www.encodeproject.org/files/ENCFF853AGM/@@download/ENCFF853AGM.bed.gz mm10 released mild to moderate bottlenecking ENCFF403MXL bigBed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF853AGM 3663388 ENCODE Processing Pipeline 890a7ac2d97e35979cab2d88c2e79abb https://www.encodeproject.org/files/ENCFF403MXL/@@download/ENCFF403MXL.bigBed mm10 released mild to moderate bottlenecking ENCFF681XSU bigBed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF443LHD 5578942 ENCODE Processing Pipeline 2e8fafa62b28da6497bef7a432d51075 https://www.encodeproject.org/files/ENCFF681XSU/@@download/ENCFF681XSU.bigBed mm10 released mild to moderate bottlenecking ENCFF980HGT bigBed narrowPeak peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF328SJI 4857526 ENCODE Processing Pipeline 20dca6326373dc2fbe9f0b864dfce5a7 https://www.encodeproject.org/files/ENCFF980HGT/@@download/ENCFF980HGT.bigBed mm10 released mild to moderate bottlenecking ENCFF012GCC bigWig signal p-value ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF092TYS, ENCFF563KVK 737606579 ENCODE Processing Pipeline bf0f84018a333c0538db7bc35960d69e https://www.encodeproject.org/files/ENCFF012GCC/@@download/ENCFF012GCC.bigWig mm10 released mild to moderate bottlenecking ENCFF767UAU bigWig signal p-value ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF198HVF, ENCFF563KVK, ENCFF741BBU 1059124512 ENCODE Processing Pipeline 8b8d4040eb33eb4a95715fb6da3184ec https://www.encodeproject.org/files/ENCFF767UAU/@@download/ENCFF767UAU.bigWig mm10 released mild to moderate bottlenecking ENCFF401XRK bigWig signal p-value ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF092TYS, ENCFF198HVF, ENCFF563KVK, ENCFF741BBU 1549586551 ENCODE Processing Pipeline 55387b9d692bf73d533ec4b421912bd2 https://www.encodeproject.org/files/ENCFF401XRK/@@download/ENCFF401XRK.bigWig mm10 released mild to moderate bottlenecking ENCFF899FPV bigWig fold change over control ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF092TYS, ENCFF563KVK 881203311 ENCODE Processing Pipeline b67fcc30f0aa7c7e72206718a616c4d8 https://www.encodeproject.org/files/ENCFF899FPV/@@download/ENCFF899FPV.bigWig mm10 released mild to moderate bottlenecking ENCFF307XSM bigWig fold change over control ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF198HVF, ENCFF563KVK, ENCFF741BBU 1079899318 ENCODE Processing Pipeline f566abd9c6e5bd58ba7df4642df64177 https://www.encodeproject.org/files/ENCFF307XSM/@@download/ENCFF307XSM.bigWig mm10 released mild to moderate bottlenecking ENCFF597HKP bigWig fold change over control ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF092TYS, ENCFF198HVF, ENCFF563KVK, ENCFF741BBU 1579531152 ENCODE Processing Pipeline 1a7ed7c84e301313941b2e8607c1d017 https://www.encodeproject.org/files/ENCFF597HKP/@@download/ENCFF597HKP.bigWig mm10 released mild to moderate bottlenecking ENCFF354FYV bigBed narrowPeak replicated peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF397HZX 3265402 ENCODE Processing Pipeline 62be2262e99b473ace01002c4afcb026 https://www.encodeproject.org/files/ENCFF354FYV/@@download/ENCFF354FYV.bigBed mm10 released mild to moderate bottlenecking ENCFF397HZX bed narrowPeak replicated peaks ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF328SJI, ENCFF443LHD, ENCFF853AGM 1581760 ENCODE Processing Pipeline b233dc4f79d86aa533564d68aa58f9a3 https://www.encodeproject.org/files/ENCFF397HZX/@@download/ENCFF397HZX.bed.gz mm10 released mild to moderate bottlenecking ENCFF001NOC fastq reads ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 793182833 Michael Snyder, Stanford 95a7ee14869770f5f57c6549e3ccb241 https://www.encodeproject.org/files/ENCFF001NOC/@@download/ENCFF001NOC.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOB bigBed narrowPeak peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIX 550569 Michael Snyder, Stanford b651ab4728e321714511faee5b779d3e https://www.encodeproject.org/files/ENCFF001NOB/@@download/ENCFF001NOB.bigBed mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOE bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NOC 379622293 Michael Snyder, Stanford 034c146fb67c9d2f657a0b460a899d4c https://www.encodeproject.org/files/ENCFF001NOE/@@download/ENCFF001NOE.bam mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOF fastq reads ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1587495011 Michael Snyder, Stanford 22ba6b9467c39be6117b42805a2891ca https://www.encodeproject.org/files/ENCFF001NOF/@@download/ENCFF001NOF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOH bigWig signal ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOE, ENCFF001NOI 233992794 Michael Snyder, Stanford 60ac80c51e62105e3d9fbc20d2bf01be https://www.encodeproject.org/files/ENCFF001NOH/@@download/ENCFF001NOH.bigWig mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOI bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NOF 681057801 Michael Snyder, Stanford b597c930a7e71b5964a3ecb59a0881ce https://www.encodeproject.org/files/ENCFF001NOI/@@download/ENCFF001NOI.bam mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001YIX bed narrowPeak peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOE, ENCFF001NOI 233365 Michael Snyder, Stanford b86e14f95ca15613a23c042b3128b5c0 https://www.encodeproject.org/files/ENCFF001YIX/@@download/ENCFF001YIX.bed.gz mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF635SAN bam unfiltered alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOF, ENCFF018NEO 1707186703 ENCODE Processing Pipeline 7a48a16ab3e506673762b17b25c072c8 https://www.encodeproject.org/files/ENCFF635SAN/@@download/ENCFF635SAN.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF361ECJ bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOC, ENCFF018NEO 540591748 ENCODE Processing Pipeline dd491191aaf972da8cb965427c8c1297 https://www.encodeproject.org/files/ENCFF361ECJ/@@download/ENCFF361ECJ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF634JSV bam unfiltered alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOC, ENCFF018NEO 882869246 ENCODE Processing Pipeline 93a9231c47d2782f70046b80988289e2 https://www.encodeproject.org/files/ENCFF634JSV/@@download/ENCFF634JSV.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF853JQH bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOF, ENCFF018NEO 992373682 ENCODE Processing Pipeline 1116376e83a5920afb778509239059df https://www.encodeproject.org/files/ENCFF853JQH/@@download/ENCFF853JQH.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF088PZP bigWig signal p-value ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF361ECJ, ENCFF966YUS 455521764 ENCODE Processing Pipeline f6a0c7817530c916241de7bed319f5b7 https://www.encodeproject.org/files/ENCFF088PZP/@@download/ENCFF088PZP.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF343KSC bigWig signal p-value ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF853JQH, ENCFF966YUS 489568088 ENCODE Processing Pipeline e0954c8a6401850ef8bdd6ee4d76b1c4 https://www.encodeproject.org/files/ENCFF343KSC/@@download/ENCFF343KSC.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF831ROG bigWig fold change over control ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF361ECJ, ENCFF966YUS 295446893 ENCODE Processing Pipeline 92e161c14bb29e217b24414a112f83e0 https://www.encodeproject.org/files/ENCFF831ROG/@@download/ENCFF831ROG.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF240VTU bigWig signal p-value ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF361ECJ, ENCFF853JQH, ENCFF966YUS 662121533 ENCODE Processing Pipeline 2688a7391c07799e7b7d40440fc48aa6 https://www.encodeproject.org/files/ENCFF240VTU/@@download/ENCFF240VTU.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF820EQV bigWig fold change over control ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF853JQH, ENCFF966YUS 491318638 ENCODE Processing Pipeline 2bcf600e6075a5203b381f93c8717665 https://www.encodeproject.org/files/ENCFF820EQV/@@download/ENCFF820EQV.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF550KLM bigWig fold change over control ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF361ECJ, ENCFF853JQH, ENCFF966YUS 666446104 ENCODE Processing Pipeline bd4558cda4274dd5dd4b1df4e7080d77 https://www.encodeproject.org/files/ENCFF550KLM/@@download/ENCFF550KLM.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF929BUB bed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF361ECJ, ENCFF966YUS 4553168 ENCODE Processing Pipeline 407f6b7cb89b0244f595b3b001a17a2a https://www.encodeproject.org/files/ENCFF929BUB/@@download/ENCFF929BUB.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF507SGS bed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF853JQH, ENCFF966YUS 4552386 ENCODE Processing Pipeline e2164f6f60ad9d2946ea736b0780570b https://www.encodeproject.org/files/ENCFF507SGS/@@download/ENCFF507SGS.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF502CBA bigBed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF507SGS 11065675 ENCODE Processing Pipeline 32d4290b4fd7197b70af01852e038d2a https://www.encodeproject.org/files/ENCFF502CBA/@@download/ENCFF502CBA.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF629JWT bed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF361ECJ, ENCFF853JQH, ENCFF966YUS 5087438 ENCODE Processing Pipeline d0026c4bf11639515c3f526574268f6f https://www.encodeproject.org/files/ENCFF629JWT/@@download/ENCFF629JWT.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF068MMQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF929BUB 10798811 ENCODE Processing Pipeline eddfa7428f081c91a0f705b86e0d3c56 https://www.encodeproject.org/files/ENCFF068MMQ/@@download/ENCFF068MMQ.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF344RHK bigBed narrowPeak peaks and background as input for IDR ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF629JWT 11457391 ENCODE Processing Pipeline a355565cb118b117515b2c993d1f1632 https://www.encodeproject.org/files/ENCFF344RHK/@@download/ENCFF344RHK.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF024QSW bed narrowPeak conservative idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF507SGS, ENCFF547MET, ENCFF629JWT, ENCFF929BUB 305744 ENCODE Processing Pipeline b423d9e26877d69ac0c6ea0f02c50448 https://www.encodeproject.org/files/ENCFF024QSW/@@download/ENCFF024QSW.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF037HDU bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF024QSW 577484 ENCODE Processing Pipeline e898b4a95df6e4c8435cff2338e7b0f6 https://www.encodeproject.org/files/ENCFF037HDU/@@download/ENCFF037HDU.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF377JTE bed narrowPeak optimal idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF507SGS, ENCFF547MET, ENCFF629JWT, ENCFF929BUB 330877 ENCODE Processing Pipeline 883cffa8d63a81203d08d23ba268e5e4 https://www.encodeproject.org/files/ENCFF377JTE/@@download/ENCFF377JTE.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF639IFN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF377JTE 614526 ENCODE Processing Pipeline 4e5bc8ee40bb438887ef4240b64b31ec https://www.encodeproject.org/files/ENCFF639IFN/@@download/ENCFF639IFN.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001OBM bigBed narrowPeak peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKM 1139812 Michael Snyder, Stanford 468e3c48ab50640d2eaab90129b15058 https://www.encodeproject.org/files/ENCFF001OBM/@@download/ENCFF001OBM.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OBN fastq reads ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 953129401 Michael Snyder, Stanford d699cf94e6f73821a224315e846bffa4 https://www.encodeproject.org/files/ENCFF001OBN/@@download/ENCFF001OBN.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OBP fastq reads ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 882995364 Michael Snyder, Stanford f139950cc385e8ac957c82cbd2b98b55 https://www.encodeproject.org/files/ENCFF001OBP/@@download/ENCFF001OBP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OBR bigWig signal ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OBS, ENCFF001OBT 207783644 Michael Snyder, Stanford d3ffd7948b84632c66be161f52f30eb2 https://www.encodeproject.org/files/ENCFF001OBR/@@download/ENCFF001OBR.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OBS bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001OBN 468251501 Michael Snyder, Stanford ad1beaeb8e135f3d9cb4a5366a938930 https://www.encodeproject.org/files/ENCFF001OBS/@@download/ENCFF001OBS.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OBT bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OBP 458215389 Michael Snyder, Stanford 43ce19d656142e430edcd649dd9f1c26 https://www.encodeproject.org/files/ENCFF001OBT/@@download/ENCFF001OBT.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKM bed narrowPeak peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OBS, ENCFF001OBT 426643 Michael Snyder, Stanford 4f9f7a8f8bb921c36e2e1e77362cf7b4 https://www.encodeproject.org/files/ENCFF001YKM/@@download/ENCFF001YKM.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF676TTL bam unfiltered alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBN, ENCFF018NEO 1037766703 ENCODE Processing Pipeline 79ef38453c70753e4a139da68bd02293 https://www.encodeproject.org/files/ENCFF676TTL/@@download/ENCFF676TTL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF842CYQ bam unfiltered alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBP, ENCFF018NEO 952900844 ENCODE Processing Pipeline ce3cfe4fe8ebf5db6dab2bbc3a2ac5bc https://www.encodeproject.org/files/ENCFF842CYQ/@@download/ENCFF842CYQ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF504VVD bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBN, ENCFF018NEO 615637478 ENCODE Processing Pipeline 2decde58005fe65dc00f7181ffd512b7 https://www.encodeproject.org/files/ENCFF504VVD/@@download/ENCFF504VVD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF730KCK bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBP, ENCFF018NEO 611197160 ENCODE Processing Pipeline 7325815783e39cead9dedee37db26270 https://www.encodeproject.org/files/ENCFF730KCK/@@download/ENCFF730KCK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF271LKG bigWig signal p-value ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF504VVD, ENCFF730KCK 281738528 ENCODE Processing Pipeline a534da7c8002df96ffbf8057ee4b6c23 https://www.encodeproject.org/files/ENCFF271LKG/@@download/ENCFF271LKG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF838GQM bigBed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF439TXC 12960082 ENCODE Processing Pipeline edaa6c68209e112b3f7ea13ff3ddf219 https://www.encodeproject.org/files/ENCFF838GQM/@@download/ENCFF838GQM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF746YDQ bigWig signal p-value ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF504VVD 321392468 ENCODE Processing Pipeline 5620bc1daf754ff0232dfb731e99c246 https://www.encodeproject.org/files/ENCFF746YDQ/@@download/ENCFF746YDQ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF802TPK bigWig signal p-value ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF730KCK 288615679 ENCODE Processing Pipeline 1e54fe74030cc07af339190911c9591c https://www.encodeproject.org/files/ENCFF802TPK/@@download/ENCFF802TPK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF631AJE bigWig fold change over control ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF504VVD 281436860 ENCODE Processing Pipeline b243cd0624f9ec306ba8d2b760a84c13 https://www.encodeproject.org/files/ENCFF631AJE/@@download/ENCFF631AJE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF769TLU bigWig fold change over control ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF730KCK 277161395 ENCODE Processing Pipeline 4689938aec6508d535e4e0c2a99bd299 https://www.encodeproject.org/files/ENCFF769TLU/@@download/ENCFF769TLU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF807HIG bigWig fold change over control ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF504VVD, ENCFF730KCK 456641858 ENCODE Processing Pipeline a12c96cc77ff5031805995826aa44e4e https://www.encodeproject.org/files/ENCFF807HIG/@@download/ENCFF807HIG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF257UCC bed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF504VVD 5462700 ENCODE Processing Pipeline 62d1c0ce8f9fc84e45a3ab7d49fb4a75 https://www.encodeproject.org/files/ENCFF257UCC/@@download/ENCFF257UCC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF439TXC bed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF730KCK 5782903 ENCODE Processing Pipeline ad881290137b43b5fc44cce636e35811 https://www.encodeproject.org/files/ENCFF439TXC/@@download/ENCFF439TXC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF511FHB bigBed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF257UCC 12905596 ENCODE Processing Pipeline bfd650bc5c56f3f1af0485fbd90a0b9d https://www.encodeproject.org/files/ENCFF511FHB/@@download/ENCFF511FHB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF013WGP bigBed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF665RZK 13160288 ENCODE Processing Pipeline cb1ee3abf57f0215a2fc1b06cb564cc8 https://www.encodeproject.org/files/ENCFF013WGP/@@download/ENCFF013WGP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF665RZK bed narrowPeak peaks and background as input for IDR ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF504VVD, ENCFF730KCK 6384529 ENCODE Processing Pipeline 4d3cd1470767a80c86947907179db1e8 https://www.encodeproject.org/files/ENCFF665RZK/@@download/ENCFF665RZK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF325FTB bed narrowPeak conservative idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF257UCC, ENCFF439TXC, ENCFF547MET, ENCFF665RZK 604105 ENCODE Processing Pipeline a93df1cee4b15aa2f25684521a7a3db1 https://www.encodeproject.org/files/ENCFF325FTB/@@download/ENCFF325FTB.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF140PVT bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325FTB 1157073 ENCODE Processing Pipeline 4c8894f785cb64700d609bf853ba30bc https://www.encodeproject.org/files/ENCFF140PVT/@@download/ENCFF140PVT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF611SZM bed narrowPeak optimal idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF257UCC, ENCFF439TXC, ENCFF547MET, ENCFF665RZK 605216 ENCODE Processing Pipeline 04885dbeb322e6acf18ef60d9e78a068 https://www.encodeproject.org/files/ENCFF611SZM/@@download/ENCFF611SZM.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF978QUP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF611SZM 1157291 ENCODE Processing Pipeline 4477b72af09ee85aa62422986b0dbaef https://www.encodeproject.org/files/ENCFF978QUP/@@download/ENCFF978QUP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF264AEL fastq reads ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1622429648 Bing Ren, UCSD dd0c3a8ca35455a149f0cac2686b0376 SRA:SRR3651383 https://www.encodeproject.org/files/ENCFF264AEL/@@download/ENCFF264AEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released inconsistent platforms ENCFF321ECO fastq reads ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1772691236 Bing Ren, UCSD 77e31a526283ec28471450a5bf0d39bb SRA:SRR3651384 https://www.encodeproject.org/files/ENCFF321ECO/@@download/ENCFF321ECO.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms ENCFF777BPB bam alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF264AEL, ENCFF806TVZ 1306467983 ENCODE Processing Pipeline c5385a3953a0d88fc33cc2276466ebb0 https://www.encodeproject.org/files/ENCFF777BPB/@@download/ENCFF777BPB.bam mm10-minimal archived inconsistent platforms ENCFF233IGC bam alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF321ECO, ENCFF806TVZ 1443178494 ENCODE Processing Pipeline 56c4e0977632a78a70919c10f8710b2d https://www.encodeproject.org/files/ENCFF233IGC/@@download/ENCFF233IGC.bam mm10-minimal archived inconsistent platforms ENCFF356ZHE bed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF777BPB 774305 ENCODE Processing Pipeline 60a327fdc5976dfff7e43d1c0c961d45 https://www.encodeproject.org/files/ENCFF356ZHE/@@download/ENCFF356ZHE.bed.gz mm10-minimal archived inconsistent platforms ENCFF355AJY bigBed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF745UUU 2618508 ENCODE Processing Pipeline 7f970663fdd4629ddffa10bc4f81057a https://www.encodeproject.org/files/ENCFF355AJY/@@download/ENCFF355AJY.bigBed mm10-minimal archived inconsistent platforms ENCFF745UUU bed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF233IGC, ENCFF263OMS, ENCFF667WJC 821864 ENCODE Processing Pipeline 89e60698a950957d4ef815b908c81930 https://www.encodeproject.org/files/ENCFF745UUU/@@download/ENCFF745UUU.bed.gz mm10-minimal archived inconsistent platforms ENCFF108IKI bed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF233IGC, ENCFF263OMS, ENCFF667WJC, ENCFF777BPB 818229 ENCODE Processing Pipeline bb2ccbbbe1f36ac598a0b855be39dd90 https://www.encodeproject.org/files/ENCFF108IKI/@@download/ENCFF108IKI.bed.gz mm10-minimal archived inconsistent platforms ENCFF763FWL bigBed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF356ZHE 2477236 ENCODE Processing Pipeline bd5d9f2cd9a5692a247513f0520c0d64 https://www.encodeproject.org/files/ENCFF763FWL/@@download/ENCFF763FWL.bigBed mm10-minimal archived inconsistent platforms ENCFF972BOF bigBed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF108IKI 2615648 ENCODE Processing Pipeline 0664debfe8e42a0102af1ac33abc43ae https://www.encodeproject.org/files/ENCFF972BOF/@@download/ENCFF972BOF.bigBed mm10-minimal archived inconsistent platforms ENCFF981FMB bigWig signal p-value ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF233IGC, ENCFF263OMS, ENCFF667WJC 635873027 ENCODE Processing Pipeline eec62900d621f887f68e2d8f20f2a1cb https://www.encodeproject.org/files/ENCFF981FMB/@@download/ENCFF981FMB.bigWig mm10-minimal archived inconsistent platforms ENCFF623GQI bigWig signal p-value ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF777BPB 669742250 ENCODE Processing Pipeline 7c196f00af6999c234beeaf3b817a0dd https://www.encodeproject.org/files/ENCFF623GQI/@@download/ENCFF623GQI.bigWig mm10-minimal archived inconsistent platforms ENCFF143FPT bigWig signal p-value ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF233IGC, ENCFF263OMS, ENCFF667WJC, ENCFF777BPB 732371215 ENCODE Processing Pipeline cc1450e7e4aafdef86780ec1c2c54618 https://www.encodeproject.org/files/ENCFF143FPT/@@download/ENCFF143FPT.bigWig mm10-minimal archived inconsistent platforms ENCFF527GUI bigWig fold change over control ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF233IGC, ENCFF263OMS, ENCFF667WJC 680658199 ENCODE Processing Pipeline 5ea9816d708db53e62d8f63ec95b90be https://www.encodeproject.org/files/ENCFF527GUI/@@download/ENCFF527GUI.bigWig mm10-minimal archived inconsistent platforms ENCFF912SAK bigWig fold change over control ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF777BPB 637574682 ENCODE Processing Pipeline e4b914bfc69a3ddb16eb838866166e8a https://www.encodeproject.org/files/ENCFF912SAK/@@download/ENCFF912SAK.bigWig mm10-minimal archived inconsistent platforms ENCFF341AZU bigWig fold change over control ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF233IGC, ENCFF263OMS, ENCFF667WJC, ENCFF777BPB 1004569891 ENCODE Processing Pipeline 84df4f6173b17cb56df0301b4f2b7bd5 https://www.encodeproject.org/files/ENCFF341AZU/@@download/ENCFF341AZU.bigWig mm10-minimal archived inconsistent platforms ENCFF535BXI bed narrowPeak replicated peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF108IKI, ENCFF356ZHE, ENCFF745UUU 845051 ENCODE Processing Pipeline cc8694c7fccdd430bd227d811a6f93ff https://www.encodeproject.org/files/ENCFF535BXI/@@download/ENCFF535BXI.bed.gz mm10-minimal archived inconsistent platforms ENCFF059HSK bigBed narrowPeak replicated peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF535BXI 2048343 ENCODE Processing Pipeline 2507822cfc8b5f1fbbacaf5d46600c89 https://www.encodeproject.org/files/ENCFF059HSK/@@download/ENCFF059HSK.bigBed mm10-minimal archived inconsistent platforms ENCFF586YQX bam unfiltered alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF264AEL 1914681695 ENCODE Processing Pipeline 2b8deeb8a80676f92c67890d17367f78 https://www.encodeproject.org/files/ENCFF586YQX/@@download/ENCFF586YQX.bam mm10 released inconsistent platforms ENCFF761SRU bam unfiltered alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF321ECO 2096085992 ENCODE Processing Pipeline e6c84c0cde4d37e6c76698878ccfdc7d https://www.encodeproject.org/files/ENCFF761SRU/@@download/ENCFF761SRU.bam mm10 released inconsistent platforms ENCFF161LUJ bam alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF321ECO 1442842555 ENCODE Processing Pipeline 403b9084d202bfeba1d2a391f6adaea7 https://www.encodeproject.org/files/ENCFF161LUJ/@@download/ENCFF161LUJ.bam mm10 released inconsistent platforms ENCFF822YJM bam alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF264AEL 1306172698 ENCODE Processing Pipeline c8d2df6a8d6366ae9b0ed7fe288bc312 https://www.encodeproject.org/files/ENCFF822YJM/@@download/ENCFF822YJM.bam mm10 released inconsistent platforms ENCFF458XSU bigBed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF889UGY 2684045 ENCODE Processing Pipeline 3987017f2eea3b2de2a5baea415a2173 https://www.encodeproject.org/files/ENCFF458XSU/@@download/ENCFF458XSU.bigBed mm10 released inconsistent platforms ENCFF815XCI bed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF822YJM 787121 ENCODE Processing Pipeline f564d11fee15c0bb0a4b0bcb13d05656 https://www.encodeproject.org/files/ENCFF815XCI/@@download/ENCFF815XCI.bed.gz mm10 released inconsistent platforms ENCFF349XYE bigBed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF815XCI 2515213 ENCODE Processing Pipeline 3f46328005be07ea6512259878bcada1 https://www.encodeproject.org/files/ENCFF349XYE/@@download/ENCFF349XYE.bigBed mm10 released inconsistent platforms ENCFF889UGY bed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF161LUJ, ENCFF514GVM 841967 ENCODE Processing Pipeline 78f61fa7e007225d921d0d36591a7f20 https://www.encodeproject.org/files/ENCFF889UGY/@@download/ENCFF889UGY.bed.gz mm10 released inconsistent platforms ENCFF652YPP bigWig signal p-value ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF161LUJ, ENCFF514GVM 740358387 ENCODE Processing Pipeline df2120443f015890c91da2421615f9e4 https://www.encodeproject.org/files/ENCFF652YPP/@@download/ENCFF652YPP.bigWig mm10 released inconsistent platforms ENCFF763JMG bigBed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF948KEN 2617504 ENCODE Processing Pipeline 07317e1aee8cb590d49aa21d3153e909 https://www.encodeproject.org/files/ENCFF763JMG/@@download/ENCFF763JMG.bigBed mm10 released inconsistent platforms ENCFF948KEN bed narrowPeak peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF161LUJ, ENCFF514GVM, ENCFF822YJM 827064 ENCODE Processing Pipeline 7c42113a98c81608758b232212d85ef1 https://www.encodeproject.org/files/ENCFF948KEN/@@download/ENCFF948KEN.bed.gz mm10 released inconsistent platforms ENCFF369IQJ bigWig signal p-value ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF822YJM 733816969 ENCODE Processing Pipeline 759eadbc262376df0638d69a463eb6e2 https://www.encodeproject.org/files/ENCFF369IQJ/@@download/ENCFF369IQJ.bigWig mm10 released inconsistent platforms ENCFF931OCX bigWig signal p-value ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF161LUJ, ENCFF514GVM, ENCFF822YJM 1081547971 ENCODE Processing Pipeline 0914d8e59a5e8883a1c5895239c2f198 https://www.encodeproject.org/files/ENCFF931OCX/@@download/ENCFF931OCX.bigWig mm10 released inconsistent platforms ENCFF306QMB bigWig fold change over control ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF161LUJ, ENCFF514GVM 802835762 ENCODE Processing Pipeline 302162a833279212bb15747912e56efa https://www.encodeproject.org/files/ENCFF306QMB/@@download/ENCFF306QMB.bigWig mm10 released inconsistent platforms ENCFF698GRE bigWig fold change over control ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF822YJM 698522579 ENCODE Processing Pipeline 00dc6ae314b380ffef9f6c27f37a50f2 https://www.encodeproject.org/files/ENCFF698GRE/@@download/ENCFF698GRE.bigWig mm10 released inconsistent platforms ENCFF069MRV bigWig fold change over control ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF161LUJ, ENCFF514GVM, ENCFF822YJM 1053366582 ENCODE Processing Pipeline 1d935e777dd7cccc94587492f2e7426c https://www.encodeproject.org/files/ENCFF069MRV/@@download/ENCFF069MRV.bigWig mm10 released inconsistent platforms ENCFF172TDO bed narrowPeak replicated peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF815XCI, ENCFF889UGY, ENCFF948KEN 852814 ENCODE Processing Pipeline 81f42cceb3c393fdd980ab7dc70b7a60 https://www.encodeproject.org/files/ENCFF172TDO/@@download/ENCFF172TDO.bed.gz mm10 released inconsistent platforms ENCFF533ETB bigBed narrowPeak replicated peaks ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF172TDO 2073001 ENCODE Processing Pipeline e9f75f37eed686d6b8ecd1cfd1fd50a4 https://www.encodeproject.org/files/ENCFF533ETB/@@download/ENCFF533ETB.bigBed mm10 released inconsistent platforms ENCFF001KBT bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KCH 2017379044 Bing Ren, UCSD 53fe19dc13590d374bc7abaaae8dc064 https://www.encodeproject.org/files/ENCFF001KBT/@@download/ENCFF001KBT.bam mm9 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001KBW bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KCI 1938498904 Bing Ren, UCSD 3b3aff2cb875bc32ea96eeaa69e72536 https://www.encodeproject.org/files/ENCFF001KBW/@@download/ENCFF001KBW.bam mm9 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001KBX bigWig signal ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KBT, ENCFF001KBW 72240378 Bing Ren, UCSD 8c4671ec882cdead6236d794876f15ac https://www.encodeproject.org/files/ENCFF001KBX/@@download/ENCFF001KBX.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001KCH fastq reads ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 2076751483 Bing Ren, UCSD 63d82fd449f79a29589f9cbd39804546 https://www.encodeproject.org/files/ENCFF001KCH/@@download/ENCFF001KCH.fastq.gz Illumina HiSeq 2000 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001KCI fastq reads ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 2032616586 Bing Ren, UCSD 137be8b67e4459a5f3b29413373da7a5 https://www.encodeproject.org/files/ENCFF001KCI/@@download/ENCFF001KCI.fastq.gz Illumina HiSeq 2000 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF238BKZ bam unfiltered alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KCH, ENCFF516HDY 2108164229 J. Michael Cherry, Stanford d8cd783c097f6977224b161445d452e6 https://www.encodeproject.org/files/ENCFF238BKZ/@@download/ENCFF238BKZ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF228QAS bam unfiltered alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KCI, ENCFF516HDY 2008476181 J. Michael Cherry, Stanford 0c64542dc3ba6041837bc6a62e3740ff https://www.encodeproject.org/files/ENCFF228QAS/@@download/ENCFF228QAS.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF017WTH bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KCI, ENCFF018NEO 879577147 ENCODE Processing Pipeline 1756c24980e8c1a18f81cdf85d9c3062 https://www.encodeproject.org/files/ENCFF017WTH/@@download/ENCFF017WTH.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF089REQ bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KCH, ENCFF018NEO 1043835355 ENCODE Processing Pipeline 69217ce6ded4d704add3a6b990272bf8 https://www.encodeproject.org/files/ENCFF089REQ/@@download/ENCFF089REQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF957ZRT bam unfiltered alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KCH, ENCFF018NEO 2112586404 ENCODE Processing Pipeline b1ba972a6b5847161c1a3fb5d58cbf4d https://www.encodeproject.org/files/ENCFF957ZRT/@@download/ENCFF957ZRT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF047KSZ bam unfiltered alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KCI, ENCFF018NEO 2011669278 ENCODE Processing Pipeline 7d4d465bd8e69ae5280fd00aa1cf9248 https://www.encodeproject.org/files/ENCFF047KSZ/@@download/ENCFF047KSZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF805CZV bam unfiltered alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KCI, ENCFF018NEO 1668934426 ENCODE Processing Pipeline 8d4e37e7dcf8c19eaec7947c5cbcb273 https://www.encodeproject.org/files/ENCFF805CZV/@@download/ENCFF805CZV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF734VIL bam unfiltered alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KCH, ENCFF018NEO 1749248569 ENCODE Processing Pipeline 2ed4d813564389b35d80cb9a8a990204 https://www.encodeproject.org/files/ENCFF734VIL/@@download/ENCFF734VIL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF260OJF bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KCI, ENCFF018NEO 681297756 ENCODE Processing Pipeline 9f8e7c36ddcac4630374a4759412ec41 https://www.encodeproject.org/files/ENCFF260OJF/@@download/ENCFF260OJF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF020THJ bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KCH, ENCFF018NEO 806541609 ENCODE Processing Pipeline 5a22e4dd63a3db00856ea4760bc4e735 https://www.encodeproject.org/files/ENCFF020THJ/@@download/ENCFF020THJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF527DSY fastq reads ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 2741907308 Bing Ren, UCSD 0a85f59b1d259c7e6a56fa7b68cb6581 SRA:SRR3652408 https://www.encodeproject.org/files/ENCFF527DSY/@@download/ENCFF527DSY.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking ENCFF798YAA fastq reads ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 2287531863 Bing Ren, UCSD 284935672207be9311d8bff8cef0090a SRA:SRR3652407 https://www.encodeproject.org/files/ENCFF798YAA/@@download/ENCFF798YAA.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released mild to moderate bottlenecking ENCFF774SMG bam alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF798YAA, ENCFF806TVZ 1471847263 ENCODE Processing Pipeline 17b6cef63dcf16e7a11991b7dbd21b62 https://www.encodeproject.org/files/ENCFF774SMG/@@download/ENCFF774SMG.bam mm10-minimal archived mild to moderate bottlenecking ENCFF003MDP bam alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF527DSY, ENCFF806TVZ 1665172881 ENCODE Processing Pipeline 4b6d17c9931f9c0a07b455c036a604d9 https://www.encodeproject.org/files/ENCFF003MDP/@@download/ENCFF003MDP.bam mm10-minimal archived mild to moderate bottlenecking ENCFF128QYJ bed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF774SMG 1858961 ENCODE Processing Pipeline 70fa964e246244bde4cbdf99b739f169 https://www.encodeproject.org/files/ENCFF128QYJ/@@download/ENCFF128QYJ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF927IUY bigBed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF128QYJ 3808400 ENCODE Processing Pipeline 6fb7022905cd06475a6e27ba08020803 https://www.encodeproject.org/files/ENCFF927IUY/@@download/ENCFF927IUY.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF718CLC bed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF003MDP, ENCFF294RLZ 1708498 ENCODE Processing Pipeline 4db5cf12289dd96d9b500e980aa268af https://www.encodeproject.org/files/ENCFF718CLC/@@download/ENCFF718CLC.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF088POH bed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF003MDP, ENCFF294RLZ, ENCFF720CTQ, ENCFF774SMG 2760190 ENCODE Processing Pipeline 26e234b6f84286fd1b492bc02171e757 https://www.encodeproject.org/files/ENCFF088POH/@@download/ENCFF088POH.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF698LFQ bigBed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF718CLC 3529476 ENCODE Processing Pipeline 6d965339b35b4b7c39e5dfd620c69195 https://www.encodeproject.org/files/ENCFF698LFQ/@@download/ENCFF698LFQ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF919KEL bigBed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF088POH 6815131 ENCODE Processing Pipeline 404513e5f1aafc9b422aa8db572efca8 https://www.encodeproject.org/files/ENCFF919KEL/@@download/ENCFF919KEL.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF496BIK bigWig fold change over control ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF774SMG 762964338 ENCODE Processing Pipeline aac45224e84116e30f9e22190323a59c https://www.encodeproject.org/files/ENCFF496BIK/@@download/ENCFF496BIK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF731HXW bigWig signal p-value ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF003MDP, ENCFF294RLZ, ENCFF720CTQ, ENCFF774SMG 1464945933 ENCODE Processing Pipeline 07ec9a731923748599ddbf27949266ea https://www.encodeproject.org/files/ENCFF731HXW/@@download/ENCFF731HXW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF671TNJ bigWig fold change over control ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF003MDP, ENCFF294RLZ 786322009 ENCODE Processing Pipeline 5a082bf99f00fa77151f24c4bd7882c8 https://www.encodeproject.org/files/ENCFF671TNJ/@@download/ENCFF671TNJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF968LUR bigWig signal p-value ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF003MDP, ENCFF294RLZ 780164305 ENCODE Processing Pipeline a27dea8c6dae9ead2677353f50d33da7 https://www.encodeproject.org/files/ENCFF968LUR/@@download/ENCFF968LUR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF723BBE bigWig signal p-value ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720CTQ, ENCFF774SMG 729139431 ENCODE Processing Pipeline 307f6de0451a2ee591505f9f1296f8a4 https://www.encodeproject.org/files/ENCFF723BBE/@@download/ENCFF723BBE.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF258DGP bed narrowPeak replicated peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF088POH, ENCFF128QYJ, ENCFF718CLC 1358004 ENCODE Processing Pipeline dc5619f6fe4fcdd890f198ec66922765 https://www.encodeproject.org/files/ENCFF258DGP/@@download/ENCFF258DGP.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF537MJA bigWig fold change over control ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF003MDP, ENCFF294RLZ, ENCFF720CTQ, ENCFF774SMG 1522604749 ENCODE Processing Pipeline ce1649dab4a853794acf33cd55624e02 https://www.encodeproject.org/files/ENCFF537MJA/@@download/ENCFF537MJA.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF704XMD bigBed narrowPeak replicated peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF258DGP 2993034 ENCODE Processing Pipeline 2f8cf092b3c9e9c5a6fc573c8198c74a https://www.encodeproject.org/files/ENCFF704XMD/@@download/ENCFF704XMD.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF281EDN bam unfiltered alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF527DSY 3547887589 ENCODE Processing Pipeline c78cf7084da2fd94c7ac3cdcb2e88a7c https://www.encodeproject.org/files/ENCFF281EDN/@@download/ENCFF281EDN.bam mm10 released mild to moderate bottlenecking ENCFF390DHC bam unfiltered alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF798YAA 2980897738 ENCODE Processing Pipeline 343eebe2ec222c952b23fba80cbeaf14 https://www.encodeproject.org/files/ENCFF390DHC/@@download/ENCFF390DHC.bam mm10 released mild to moderate bottlenecking ENCFF967OXL bam alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF527DSY 1664379239 ENCODE Processing Pipeline fe94d03392975da42821da5f8b8d22a8 https://www.encodeproject.org/files/ENCFF967OXL/@@download/ENCFF967OXL.bam mm10 released mild to moderate bottlenecking ENCFF217WVV bam alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF798YAA 1470988946 ENCODE Processing Pipeline dff251be77dfd322621849c830d36b6f https://www.encodeproject.org/files/ENCFF217WVV/@@download/ENCFF217WVV.bam mm10 released mild to moderate bottlenecking ENCFF509UEY bed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF217WVV 1860374 ENCODE Processing Pipeline b4eb1ce95d9be36e72557286fd654250 https://www.encodeproject.org/files/ENCFF509UEY/@@download/ENCFF509UEY.bed.gz mm10 released mild to moderate bottlenecking ENCFF098CBO bigBed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF710VHF 3476432 ENCODE Processing Pipeline 419a499ce550eaa49100c1e52c91c5bc https://www.encodeproject.org/files/ENCFF098CBO/@@download/ENCFF098CBO.bigBed mm10 released mild to moderate bottlenecking ENCFF249QZO bigBed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF509UEY 3868160 ENCODE Processing Pipeline 8e0b20334bd3a19d7a0f66c9d545dc61 https://www.encodeproject.org/files/ENCFF249QZO/@@download/ENCFF249QZO.bigBed mm10 released mild to moderate bottlenecking ENCFF086TMP bigWig signal p-value ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF741HOY, ENCFF967OXL 705246164 ENCODE Processing Pipeline 9586dffd0204157aa4ac41c6f0d25533 https://www.encodeproject.org/files/ENCFF086TMP/@@download/ENCFF086TMP.bigWig mm10 released mild to moderate bottlenecking ENCFF710VHF bed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF741HOY, ENCFF967OXL 1671464 ENCODE Processing Pipeline 087cc550f9e7daebdf3ff517a594a39f https://www.encodeproject.org/files/ENCFF710VHF/@@download/ENCFF710VHF.bed.gz mm10 released mild to moderate bottlenecking ENCFF005SXP bigBed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF653VTS 6823465 ENCODE Processing Pipeline ac43621b377a9071441eb43f0790a713 https://www.encodeproject.org/files/ENCFF005SXP/@@download/ENCFF005SXP.bigBed mm10 released mild to moderate bottlenecking ENCFF653VTS bed narrowPeak peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF217WVV, ENCFF741HOY, ENCFF967OXL 2764916 ENCODE Processing Pipeline 477aa3fbda090b8f48afd0e1733cf64c https://www.encodeproject.org/files/ENCFF653VTS/@@download/ENCFF653VTS.bed.gz mm10 released mild to moderate bottlenecking ENCFF803QZH bigWig signal p-value ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF217WVV 804938659 ENCODE Processing Pipeline a4056549d1c1b27f973e10e110eb1e04 https://www.encodeproject.org/files/ENCFF803QZH/@@download/ENCFF803QZH.bigWig mm10 released mild to moderate bottlenecking ENCFF369BDO bigWig signal p-value ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF217WVV, ENCFF741HOY, ENCFF967OXL 1258754712 ENCODE Processing Pipeline 73733dccaaf8738057f7a0797497ff64 https://www.encodeproject.org/files/ENCFF369BDO/@@download/ENCFF369BDO.bigWig mm10 released mild to moderate bottlenecking ENCFF995VVT bigWig fold change over control ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF217WVV 786890871 ENCODE Processing Pipeline 2bad4231d32d9fd65c8f6a03338c522b https://www.encodeproject.org/files/ENCFF995VVT/@@download/ENCFF995VVT.bigWig mm10 released mild to moderate bottlenecking ENCFF530RNK bigWig fold change over control ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF741HOY, ENCFF967OXL 782697620 ENCODE Processing Pipeline 6bf9105fde8a8a02a2896725c8e63bf9 https://www.encodeproject.org/files/ENCFF530RNK/@@download/ENCFF530RNK.bigWig mm10 released mild to moderate bottlenecking ENCFF797OAF bigWig fold change over control ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF217WVV, ENCFF741HOY, ENCFF967OXL 1526829881 ENCODE Processing Pipeline b0e405118a392668b5ee4b0de0adda3d https://www.encodeproject.org/files/ENCFF797OAF/@@download/ENCFF797OAF.bigWig mm10 released mild to moderate bottlenecking ENCFF874XAV bigBed narrowPeak replicated peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF839GVV 2986443 ENCODE Processing Pipeline cce9b06cdf3fa8a2c801dc0e230fda2d https://www.encodeproject.org/files/ENCFF874XAV/@@download/ENCFF874XAV.bigBed mm10 released mild to moderate bottlenecking ENCFF839GVV bed narrowPeak replicated peaks ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF509UEY, ENCFF653VTS, ENCFF710VHF 1352658 ENCODE Processing Pipeline 4dfa7d9c6ba0fd8ebd206e0f6a3390c0 https://www.encodeproject.org/files/ENCFF839GVV/@@download/ENCFF839GVV.bed.gz mm10 released mild to moderate bottlenecking ENCFF001ZTX fastq reads ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 810937021 Bing Ren, UCSD c8eb7f029cb02cc0d5724e05c0d3452d SRA:SRR3652933 https://www.encodeproject.org/files/ENCFF001ZTX/@@download/ENCFF001ZTX.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/ released low read length, low read depth ENCFF001ZTY fastq reads ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 920322750 Bing Ren, UCSD 3003970e2b432b119ce824b59ade5047 SRA:SRR3652934 https://www.encodeproject.org/files/ENCFF001ZTY/@@download/ENCFF001ZTY.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, low read depth ENCFF793BQJ bam alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTY, ENCFF806TVZ 720414115 ENCODE Processing Pipeline 5343b6cb673b8799a1823a9cc65413a9 https://www.encodeproject.org/files/ENCFF793BQJ/@@download/ENCFF793BQJ.bam mm10-minimal archived low read length, low read depth ENCFF726ZAR bam alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTX, ENCFF806TVZ 662122428 ENCODE Processing Pipeline 827d98e2de08c524bd516d0982bab6b0 https://www.encodeproject.org/files/ENCFF726ZAR/@@download/ENCFF726ZAR.bam mm10-minimal archived low read length, low read depth ENCFF097TDI bed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF695ODM, ENCFF726ZAR 432804 ENCODE Processing Pipeline 73c2200975a3994e6dc27b210bde3cd9 https://www.encodeproject.org/files/ENCFF097TDI/@@download/ENCFF097TDI.bed.gz mm10-minimal archived low read length, low read depth ENCFF708UPY bed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF793BQJ 477093 ENCODE Processing Pipeline 87aaa92ae3c6d45c5ea475f89c8675f7 https://www.encodeproject.org/files/ENCFF708UPY/@@download/ENCFF708UPY.bed.gz mm10-minimal archived low read length, low read depth ENCFF975DTE bed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF695ODM, ENCFF726ZAR, ENCFF793BQJ 451812 ENCODE Processing Pipeline c3f6f8b2f77b75f12a64c394fcbbb0f3 https://www.encodeproject.org/files/ENCFF975DTE/@@download/ENCFF975DTE.bed.gz mm10-minimal archived low read length, low read depth ENCFF287PBQ bigWig fold change over control ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF793BQJ 298120106 ENCODE Processing Pipeline bb8aedb9edcc69e007f0da943b80e97d https://www.encodeproject.org/files/ENCFF287PBQ/@@download/ENCFF287PBQ.bigWig mm10-minimal archived low read length, low read depth ENCFF174FDZ bigWig fold change over control ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF695ODM, ENCFF726ZAR, ENCFF793BQJ 501488587 ENCODE Processing Pipeline 88de0dba159694c98f409dc17eed30b1 https://www.encodeproject.org/files/ENCFF174FDZ/@@download/ENCFF174FDZ.bigWig mm10-minimal archived low read length, low read depth ENCFF741UWK bigBed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF975DTE 1537549 ENCODE Processing Pipeline e6c1d09defb90aeb666ad2869a5ef54f https://www.encodeproject.org/files/ENCFF741UWK/@@download/ENCFF741UWK.bigBed mm10-minimal archived low read length, low read depth ENCFF123BOH bigWig signal p-value ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF695ODM, ENCFF726ZAR 362355559 ENCODE Processing Pipeline 65031de262511426a4ee1b66116883a5 https://www.encodeproject.org/files/ENCFF123BOH/@@download/ENCFF123BOH.bigWig mm10-minimal archived low read length, low read depth ENCFF303PQN bigWig signal p-value ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF695ODM, ENCFF726ZAR, ENCFF793BQJ 470980872 ENCODE Processing Pipeline 9b7d69b4aa4488e9f7c360a7076564f9 https://www.encodeproject.org/files/ENCFF303PQN/@@download/ENCFF303PQN.bigWig mm10-minimal archived low read length, low read depth ENCFF047MDU bigWig fold change over control ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF695ODM, ENCFF726ZAR 329982093 ENCODE Processing Pipeline b5aff8c0b5dbae7700c09ac6a1fa4eb5 https://www.encodeproject.org/files/ENCFF047MDU/@@download/ENCFF047MDU.bigWig mm10-minimal archived low read length, low read depth ENCFF948YZT bed narrowPeak replicated peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF097TDI, ENCFF708UPY, ENCFF975DTE 561073 ENCODE Processing Pipeline 6b1fffd154a2114f940727be18e8c73a https://www.encodeproject.org/files/ENCFF948YZT/@@download/ENCFF948YZT.bed.gz mm10-minimal archived low read length, low read depth ENCFF817OAI bigBed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF708UPY 1612608 ENCODE Processing Pipeline a7aa2fc400dff67f60b14171eaae0786 https://www.encodeproject.org/files/ENCFF817OAI/@@download/ENCFF817OAI.bigBed mm10-minimal archived low read length, low read depth ENCFF853IAM bigBed narrowPeak replicated peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF948YZT 1437922 ENCODE Processing Pipeline 2e9af0e504df44e52597c6f6de4dd66d https://www.encodeproject.org/files/ENCFF853IAM/@@download/ENCFF853IAM.bigBed mm10-minimal archived low read length, low read depth ENCFF116ITO bigBed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF097TDI 1486779 ENCODE Processing Pipeline 45003b97284cb2ef04fff71471750bb1 https://www.encodeproject.org/files/ENCFF116ITO/@@download/ENCFF116ITO.bigBed mm10-minimal archived low read length, low read depth ENCFF705ACM bigWig signal p-value ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF793BQJ 355021888 ENCODE Processing Pipeline 636685112025791aabe1b6d762a4124a https://www.encodeproject.org/files/ENCFF705ACM/@@download/ENCFF705ACM.bigWig mm10-minimal archived low read length, low read depth ENCFF975IIX bam unfiltered alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTY, ENCFF018NEO 1090456993 ENCODE Processing Pipeline 72508baab70924f35817ee925c491a15 https://www.encodeproject.org/files/ENCFF975IIX/@@download/ENCFF975IIX.bam mm10 released low read length, low read depth ENCFF286NNP bam unfiltered alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTX, ENCFF018NEO 1010986495 ENCODE Processing Pipeline 944de9437bd10a28ba42062a6255bd43 https://www.encodeproject.org/files/ENCFF286NNP/@@download/ENCFF286NNP.bam mm10 released low read length, low read depth ENCFF437KKV bam alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTX, ENCFF018NEO 661942639 ENCODE Processing Pipeline 02a16df5c4f5c518c4529a7694d2a883 https://www.encodeproject.org/files/ENCFF437KKV/@@download/ENCFF437KKV.bam mm10 released low read length, low read depth ENCFF354JHH bam alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTY, ENCFF018NEO 720285372 ENCODE Processing Pipeline 86a913486a3c355530ce722ed0f1890d https://www.encodeproject.org/files/ENCFF354JHH/@@download/ENCFF354JHH.bam mm10 released low read length, low read depth ENCFF736EOZ bed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437KKV, ENCFF631YQS, ENCFF658BBR 434242 ENCODE Processing Pipeline 04fd47d29153f7b76ed310dc60f8f2f5 https://www.encodeproject.org/files/ENCFF736EOZ/@@download/ENCFF736EOZ.bed.gz mm10 released low read length, low read depth ENCFF946HLH bed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF354JHH, ENCFF437KKV, ENCFF631YQS, ENCFF658BBR 454006 ENCODE Processing Pipeline 7b7e3dffb599763c41999211dec12d96 https://www.encodeproject.org/files/ENCFF946HLH/@@download/ENCFF946HLH.bed.gz mm10 released low read length, low read depth ENCFF370TUV bed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF354JHH, ENCFF631YQS, ENCFF658BBR 478531 ENCODE Processing Pipeline 9afabd2e2c546c8257d59eccd7a40008 https://www.encodeproject.org/files/ENCFF370TUV/@@download/ENCFF370TUV.bed.gz mm10 released low read length, low read depth ENCFF691MPV bigBed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF736EOZ 1489349 ENCODE Processing Pipeline 597a1bb7828b4ef86c64be3ba09cdee9 https://www.encodeproject.org/files/ENCFF691MPV/@@download/ENCFF691MPV.bigBed mm10 released low read length, low read depth ENCFF116SGL bigBed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF370TUV 1615917 ENCODE Processing Pipeline 7265c2891165928d8f71e6a3f830d238 https://www.encodeproject.org/files/ENCFF116SGL/@@download/ENCFF116SGL.bigBed mm10 released low read length, low read depth ENCFF854GQS bigBed narrowPeak peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF946HLH 1541111 ENCODE Processing Pipeline 8db6b29f06f78adb552fcd76f2b73f39 https://www.encodeproject.org/files/ENCFF854GQS/@@download/ENCFF854GQS.bigBed mm10 released low read length, low read depth ENCFF782CLE bigWig signal p-value ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437KKV, ENCFF631YQS, ENCFF658BBR 356355246 ENCODE Processing Pipeline f5eac86ed8d1e29521c091f086e4d39f https://www.encodeproject.org/files/ENCFF782CLE/@@download/ENCFF782CLE.bigWig mm10 released low read length, low read depth ENCFF012LQT bigWig signal p-value ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF354JHH, ENCFF631YQS, ENCFF658BBR 355639489 ENCODE Processing Pipeline 165e94956ac9a82d0b97c37f3d47c377 https://www.encodeproject.org/files/ENCFF012LQT/@@download/ENCFF012LQT.bigWig mm10 released low read length, low read depth ENCFF490QHH bigWig signal p-value ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF354JHH, ENCFF437KKV, ENCFF631YQS, ENCFF658BBR 471061101 ENCODE Processing Pipeline 839eea4e484ec5e492fcde8ead8ef1fb https://www.encodeproject.org/files/ENCFF490QHH/@@download/ENCFF490QHH.bigWig mm10 released low read length, low read depth ENCFF254PVC bigWig fold change over control ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437KKV, ENCFF631YQS, ENCFF658BBR 330065015 ENCODE Processing Pipeline 4c725825d6cafc6447b1622be50190f4 https://www.encodeproject.org/files/ENCFF254PVC/@@download/ENCFF254PVC.bigWig mm10 released low read length, low read depth ENCFF923XZB bigWig fold change over control ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF354JHH, ENCFF631YQS, ENCFF658BBR 298404314 ENCODE Processing Pipeline 7d97581852ddb37a7a8c7d3cc14f37c9 https://www.encodeproject.org/files/ENCFF923XZB/@@download/ENCFF923XZB.bigWig mm10 released low read length, low read depth ENCFF880ZZM bigWig fold change over control ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF354JHH, ENCFF437KKV, ENCFF631YQS, ENCFF658BBR 503070984 ENCODE Processing Pipeline 12c4e0af7156eb24a5b50916e76945ea https://www.encodeproject.org/files/ENCFF880ZZM/@@download/ENCFF880ZZM.bigWig mm10 released low read length, low read depth ENCFF958GPD bed narrowPeak replicated peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF370TUV, ENCFF736EOZ, ENCFF946HLH 561514 ENCODE Processing Pipeline 1648dadc244c98d437668a06620cb813 https://www.encodeproject.org/files/ENCFF958GPD/@@download/ENCFF958GPD.bed.gz mm10 released low read length, low read depth ENCFF929JFM bigBed narrowPeak replicated peaks ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF958GPD 1438683 ENCODE Processing Pipeline f06a650b767fd6862c6ec3db985b40a9 https://www.encodeproject.org/files/ENCFF929JFM/@@download/ENCFF929JFM.bigBed mm10 released low read length, low read depth ENCFF387MCM fastq reads ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 2591790375 Bing Ren, UCSD d018ac44eac22556f025d738af638e36 SRA:SRR3652113 https://www.encodeproject.org/files/ENCFF387MCM/@@download/ENCFF387MCM.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking ENCFF550HHE fastq reads ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 2544284436 Bing Ren, UCSD dee12aba32a969e9d211e829bf42422b SRA:SRR3652114 https://www.encodeproject.org/files/ENCFF550HHE/@@download/ENCFF550HHE.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released mild to moderate bottlenecking ENCFF303RND bam alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF387MCM, ENCFF806TVZ 2594260614 ENCODE Processing Pipeline 2da7f0fa47af7579dc96bc10f37f128c https://www.encodeproject.org/files/ENCFF303RND/@@download/ENCFF303RND.bam mm10-minimal archived mild to moderate bottlenecking ENCFF084WYK bam alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF550HHE, ENCFF806TVZ 2532091127 ENCODE Processing Pipeline 17d08900a18f17853b45b16a382e0122 https://www.encodeproject.org/files/ENCFF084WYK/@@download/ENCFF084WYK.bam mm10-minimal archived mild to moderate bottlenecking ENCFF289BUE bed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF084WYK, ENCFF294RLZ, ENCFF303RND, ENCFF720CTQ 4616336 ENCODE Processing Pipeline 8106ed54a2f5a799efe78eb24972863d https://www.encodeproject.org/files/ENCFF289BUE/@@download/ENCFF289BUE.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF806YZO bigWig signal p-value ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF303RND, ENCFF720CTQ 1243032592 ENCODE Processing Pipeline 2514a7bbdb97930a9ce7f356ba6444a3 https://www.encodeproject.org/files/ENCFF806YZO/@@download/ENCFF806YZO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF342LGN bigWig signal p-value ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF084WYK, ENCFF294RLZ, ENCFF303RND, ENCFF720CTQ 1816662153 ENCODE Processing Pipeline a3f2cc11df84213a35640dbd6dcb000d https://www.encodeproject.org/files/ENCFF342LGN/@@download/ENCFF342LGN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF642NIP bigBed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF704SIX 10544666 ENCODE Processing Pipeline 8845c200857af8877974565ea8a7be47 https://www.encodeproject.org/files/ENCFF642NIP/@@download/ENCFF642NIP.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF483UEA bigBed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF289BUE 12203258 ENCODE Processing Pipeline c5bbc4f6aaceec37877b1dc3b7009956 https://www.encodeproject.org/files/ENCFF483UEA/@@download/ENCFF483UEA.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF882AGZ bed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF303RND, ENCFF720CTQ 3902922 ENCODE Processing Pipeline 2be3dfc2e204f50f86ab37fda1e0e513 https://www.encodeproject.org/files/ENCFF882AGZ/@@download/ENCFF882AGZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF704SIX bed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF084WYK, ENCFF720CTQ 3917783 ENCODE Processing Pipeline 2923dfbcfbb92cc657237bd6e98fb2bf https://www.encodeproject.org/files/ENCFF704SIX/@@download/ENCFF704SIX.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF617VGZ bigWig signal p-value ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF084WYK, ENCFF720CTQ 969919051 ENCODE Processing Pipeline c6dc5499c4c46f6b33b3251d6111fdb7 https://www.encodeproject.org/files/ENCFF617VGZ/@@download/ENCFF617VGZ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF707VQN bigBed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF882AGZ 10480227 ENCODE Processing Pipeline f4bc3db10b13aeb7e96c33bc5757928a https://www.encodeproject.org/files/ENCFF707VQN/@@download/ENCFF707VQN.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF288COH bigWig fold change over control ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF303RND, ENCFF720CTQ 1423752005 ENCODE Processing Pipeline e37f04b275962830ab13b8a518502f50 https://www.encodeproject.org/files/ENCFF288COH/@@download/ENCFF288COH.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF415QAU bigBed narrowPeak replicated peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF729KRS 8140374 ENCODE Processing Pipeline 20bb028edbf30d4d19b7a8d7b1d41ed4 https://www.encodeproject.org/files/ENCFF415QAU/@@download/ENCFF415QAU.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF977XJN bigWig fold change over control ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF084WYK, ENCFF294RLZ, ENCFF303RND, ENCFF720CTQ 1876545564 ENCODE Processing Pipeline e3697b25e5ff3219dc1d64bda95cef97 https://www.encodeproject.org/files/ENCFF977XJN/@@download/ENCFF977XJN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF719DTV bigWig fold change over control ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF084WYK, ENCFF720CTQ 1052608360 ENCODE Processing Pipeline 4fb26e47c6fd95d383efc8ff5efae798 https://www.encodeproject.org/files/ENCFF719DTV/@@download/ENCFF719DTV.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF729KRS bed narrowPeak replicated peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF289BUE, ENCFF704SIX, ENCFF882AGZ 4363682 ENCODE Processing Pipeline 3a8aac29bd1c5f1b5f261aa391995ac4 https://www.encodeproject.org/files/ENCFF729KRS/@@download/ENCFF729KRS.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF007TSY bam unfiltered alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF387MCM 3338660744 ENCODE Processing Pipeline 5526d0e9d5ff318d846efb1367ff5308 https://www.encodeproject.org/files/ENCFF007TSY/@@download/ENCFF007TSY.bam mm10 released mild to moderate bottlenecking ENCFF495ASM bam alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF387MCM 2593767919 ENCODE Processing Pipeline 05c6f2b4b093548df24444624f53274c https://www.encodeproject.org/files/ENCFF495ASM/@@download/ENCFF495ASM.bam mm10 released mild to moderate bottlenecking ENCFF830ZVH bam unfiltered alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF550HHE 3261662792 ENCODE Processing Pipeline 21cca69c6d7ce8868e332372fb60fb1c https://www.encodeproject.org/files/ENCFF830ZVH/@@download/ENCFF830ZVH.bam mm10 released mild to moderate bottlenecking ENCFF052DEE bam alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF550HHE 2531575394 ENCODE Processing Pipeline 2fb1f52419f46e74d9ea88ce62d1c6b5 https://www.encodeproject.org/files/ENCFF052DEE/@@download/ENCFF052DEE.bam mm10 released mild to moderate bottlenecking ENCFF787TRG bed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF104UXG, ENCFF495ASM, ENCFF741HOY 3854258 ENCODE Processing Pipeline 10c02a5bdcc942c60f84c22046625137 https://www.encodeproject.org/files/ENCFF787TRG/@@download/ENCFF787TRG.bed.gz mm10 released mild to moderate bottlenecking ENCFF800VWZ bed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF052DEE, ENCFF104UXG 3891091 ENCODE Processing Pipeline 8b7634fa13dadae2c274426a76baf8e0 https://www.encodeproject.org/files/ENCFF800VWZ/@@download/ENCFF800VWZ.bed.gz mm10 released mild to moderate bottlenecking ENCFF650AMM bed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF052DEE, ENCFF104UXG, ENCFF495ASM, ENCFF741HOY 4695236 ENCODE Processing Pipeline 5f6bb636f6878d2215036cee06e999db https://www.encodeproject.org/files/ENCFF650AMM/@@download/ENCFF650AMM.bed.gz mm10 released mild to moderate bottlenecking ENCFF576FWR bigBed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF787TRG 10342659 ENCODE Processing Pipeline 6780548cfe0905fdc92b0646648bcfa5 https://www.encodeproject.org/files/ENCFF576FWR/@@download/ENCFF576FWR.bigBed mm10 released mild to moderate bottlenecking ENCFF206PWB bigBed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF800VWZ 10499734 ENCODE Processing Pipeline 708676da6e8f41235f9a3de8dcf74dc5 https://www.encodeproject.org/files/ENCFF206PWB/@@download/ENCFF206PWB.bigBed mm10 released mild to moderate bottlenecking ENCFF404KWR bigBed narrowPeak peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF650AMM 12378923 ENCODE Processing Pipeline fb8e817b590e8c092a15f3fa53c49682 https://www.encodeproject.org/files/ENCFF404KWR/@@download/ENCFF404KWR.bigBed mm10 released mild to moderate bottlenecking ENCFF475EGV bigWig signal p-value ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF104UXG, ENCFF495ASM, ENCFF741HOY 1393029844 ENCODE Processing Pipeline 9caaacf73ff9ec642b49b401c761a33d https://www.encodeproject.org/files/ENCFF475EGV/@@download/ENCFF475EGV.bigWig mm10 released mild to moderate bottlenecking ENCFF081HAZ bigWig signal p-value ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF052DEE, ENCFF104UXG 930901911 ENCODE Processing Pipeline 3dfc9c42d9ac1d14e5fcdfe1d296a547 https://www.encodeproject.org/files/ENCFF081HAZ/@@download/ENCFF081HAZ.bigWig mm10 released mild to moderate bottlenecking ENCFF173LCD bigWig signal p-value ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF052DEE, ENCFF104UXG, ENCFF495ASM, ENCFF741HOY 1798224697 ENCODE Processing Pipeline 69037a0bbceca046eebc31fea037ecd0 https://www.encodeproject.org/files/ENCFF173LCD/@@download/ENCFF173LCD.bigWig mm10 released mild to moderate bottlenecking ENCFF417YDQ bigWig fold change over control ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF104UXG, ENCFF495ASM, ENCFF741HOY 1398055981 ENCODE Processing Pipeline 1a69a4fde691956b8b7e1408e8f30dce https://www.encodeproject.org/files/ENCFF417YDQ/@@download/ENCFF417YDQ.bigWig mm10 released mild to moderate bottlenecking ENCFF013DUF bigWig fold change over control ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF052DEE, ENCFF104UXG 1059010126 ENCODE Processing Pipeline db4a08207e18e8db9c0adeb20c1a1779 https://www.encodeproject.org/files/ENCFF013DUF/@@download/ENCFF013DUF.bigWig mm10 released mild to moderate bottlenecking ENCFF131MXX bigWig fold change over control ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF052DEE, ENCFF104UXG, ENCFF495ASM, ENCFF741HOY 1854917609 ENCODE Processing Pipeline 696c40ab05e350a53cf827b155cad471 https://www.encodeproject.org/files/ENCFF131MXX/@@download/ENCFF131MXX.bigWig mm10 released mild to moderate bottlenecking ENCFF508FVF bed narrowPeak replicated peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF650AMM, ENCFF787TRG, ENCFF800VWZ 4458626 ENCODE Processing Pipeline 59841f9b425d0b41491581de37558f31 https://www.encodeproject.org/files/ENCFF508FVF/@@download/ENCFF508FVF.bed.gz mm10 released mild to moderate bottlenecking ENCFF668ESS bigBed narrowPeak replicated peaks ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF508FVF 8354948 ENCODE Processing Pipeline d1c057f9ae4be47e1d46acaabe941369 https://www.encodeproject.org/files/ENCFF668ESS/@@download/ENCFF668ESS.bigBed mm10 released mild to moderate bottlenecking ENCFF001MPV bam alignments ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MPZ 1769722139 Ross Hardison, PennState 019bb9f23fa9d869e3adc191b33cb60a https://www.encodeproject.org/files/ENCFF001MPV/@@download/ENCFF001MPV.bam mm9 released low read length, inconsistent platforms ENCFF001MPW bigBed broadPeak peaks ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFK 222676 Ross Hardison, PennState 1cb01755fdcdf77c01424e435e266429 https://www.encodeproject.org/files/ENCFF001MPW/@@download/ENCFF001MPW.bigBed mm9 released low read length, inconsistent platforms ENCFF001MPY bigWig signal ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 3489528356 Ross Hardison, PennState ba18e57588484928fbac8f09934fa508 https://www.encodeproject.org/files/ENCFF001MPY/@@download/ENCFF001MPY.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MPZ fastq reads ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1425444657 Ross Hardison, PennState 31554e22b8eb442f62e1d0cce8873d48 https://www.encodeproject.org/files/ENCFF001MPZ/@@download/ENCFF001MPZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MQZ/ released low read length, inconsistent platforms, inconsistent control read length ENCFF001YFK bed broadPeak peaks ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 81782 Ross Hardison, PennState 8ef9bbaa5a7a1650ce214967322dca0c https://www.encodeproject.org/files/ENCFF001YFK/@@download/ENCFF001YFK.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF205JYY bam unfiltered alignments ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MPZ, ENCFF018NEO 1869606851 ENCODE Processing Pipeline 988294aaba93d07ad1237c4cfcef0950 https://www.encodeproject.org/files/ENCFF205JYY/@@download/ENCFF205JYY.bam mm10 released low read length, inconsistent platforms ENCFF415NQQ bam alignments ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MPZ, ENCFF018NEO 1314652720 ENCODE Processing Pipeline 9106e82e784d1cfe2931995cc2285cf3 https://www.encodeproject.org/files/ENCFF415NQQ/@@download/ENCFF415NQQ.bam mm10 released low read length, inconsistent platforms ENCFF001ZTZ fastq reads ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 838687605 Bing Ren, UCSD 5ed4d44a4a1b264e12933469b5b2e264 SRA:SRR3652502 https://www.encodeproject.org/files/ENCFF001ZTZ/@@download/ENCFF001ZTZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length, low read depth ENCFF001ZUE fastq reads ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 741555038 Bing Ren, UCSD 1820b14b50870fa2766543e7de5a4a03 SRA:SRR3652501 https://www.encodeproject.org/files/ENCFF001ZUE/@@download/ENCFF001ZUE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length, low read depth ENCFF579SRO bam alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUE, ENCFF806TVZ 592302138 ENCODE Processing Pipeline 8dd3e25cc97cb2d36448f5311c8e2822 https://www.encodeproject.org/files/ENCFF579SRO/@@download/ENCFF579SRO.bam mm10-minimal archived low read length, low read depth ENCFF728QUT bam alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTZ, ENCFF806TVZ 661050596 ENCODE Processing Pipeline 4b90e4dc46d01bfd39559c9048dbe37c https://www.encodeproject.org/files/ENCFF728QUT/@@download/ENCFF728QUT.bam mm10-minimal archived low read length, low read depth ENCFF191YAI bed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF728QUT 623801 ENCODE Processing Pipeline 88c342f316b3f45a62f7527f8ba24216 https://www.encodeproject.org/files/ENCFF191YAI/@@download/ENCFF191YAI.bed.gz mm10-minimal archived low read length, low read depth ENCFF257CWB bed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF579SRO 571709 ENCODE Processing Pipeline 9bb02fa5d2cf987a7a0dd808522edd52 https://www.encodeproject.org/files/ENCFF257CWB/@@download/ENCFF257CWB.bed.gz mm10-minimal archived low read length, low read depth ENCFF742FSL bed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF579SRO, ENCFF728QUT 573364 ENCODE Processing Pipeline ded613243a32c706ce879d598c81c916 https://www.encodeproject.org/files/ENCFF742FSL/@@download/ENCFF742FSL.bed.gz mm10-minimal archived low read length, low read depth ENCFF095RVZ bigWig signal p-value ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF579SRO 319445497 ENCODE Processing Pipeline ff92a6aff312ebafad8bf6088cae188f https://www.encodeproject.org/files/ENCFF095RVZ/@@download/ENCFF095RVZ.bigWig mm10-minimal archived low read length, low read depth ENCFF490NUN bigBed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF257CWB 1875386 ENCODE Processing Pipeline 6ae6a02901d24f504cb4da1b3455b054 https://www.encodeproject.org/files/ENCFF490NUN/@@download/ENCFF490NUN.bigBed mm10-minimal archived low read length, low read depth ENCFF966IPY bigBed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF742FSL 1870497 ENCODE Processing Pipeline aaa0ff68c16bf33c6c5b216cd673c37b https://www.encodeproject.org/files/ENCFF966IPY/@@download/ENCFF966IPY.bigBed mm10-minimal archived low read length, low read depth ENCFF499MMN bigBed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF191YAI 2006375 ENCODE Processing Pipeline 52adff14ac9499e36f001124818a04f8 https://www.encodeproject.org/files/ENCFF499MMN/@@download/ENCFF499MMN.bigBed mm10-minimal archived low read length, low read depth ENCFF532HFK bigWig signal p-value ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF728QUT 361235233 ENCODE Processing Pipeline ede1ec471e1dfedc1f3990e3930f6474 https://www.encodeproject.org/files/ENCFF532HFK/@@download/ENCFF532HFK.bigWig mm10-minimal archived low read length, low read depth ENCFF813WHC bigWig signal p-value ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF579SRO, ENCFF728QUT 494444304 ENCODE Processing Pipeline f40cb80baab35b15ddad79c6c8b2afe1 https://www.encodeproject.org/files/ENCFF813WHC/@@download/ENCFF813WHC.bigWig mm10-minimal archived low read length, low read depth ENCFF733HGS bigWig fold change over control ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF579SRO 271002276 ENCODE Processing Pipeline 7d13c9752fc764c412fae3a97cfaffd8 https://www.encodeproject.org/files/ENCFF733HGS/@@download/ENCFF733HGS.bigWig mm10-minimal archived low read length, low read depth ENCFF269DII bigWig fold change over control ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF728QUT 297289823 ENCODE Processing Pipeline f065366af23f1ce4f636e0e0ac388bf0 https://www.encodeproject.org/files/ENCFF269DII/@@download/ENCFF269DII.bigWig mm10-minimal archived low read length, low read depth ENCFF849TEZ bigWig fold change over control ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF579SRO, ENCFF728QUT 466967161 ENCODE Processing Pipeline abf6f0bca1d25d3d0bb3682f023de456 https://www.encodeproject.org/files/ENCFF849TEZ/@@download/ENCFF849TEZ.bigWig mm10-minimal archived low read length, low read depth ENCFF900CLK bed narrowPeak replicated peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF191YAI, ENCFF257CWB, ENCFF742FSL 696839 ENCODE Processing Pipeline 63f2b9737058f075ad918fd0441445a3 https://www.encodeproject.org/files/ENCFF900CLK/@@download/ENCFF900CLK.bed.gz mm10-minimal archived low read length, low read depth ENCFF954TAN bigBed narrowPeak replicated peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF900CLK 1676685 ENCODE Processing Pipeline f9564a59db8d6b16d7c41e1adf1be7d3 https://www.encodeproject.org/files/ENCFF954TAN/@@download/ENCFF954TAN.bigBed mm10-minimal archived low read length, low read depth ENCFF857DNF bam unfiltered alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTZ, ENCFF018NEO 1020467725 ENCODE Processing Pipeline 8c3641db72f1ec884b04e8b58b62d732 https://www.encodeproject.org/files/ENCFF857DNF/@@download/ENCFF857DNF.bam mm10 released low read length, low read depth ENCFF266PEK bam unfiltered alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUE, ENCFF018NEO 901116398 ENCODE Processing Pipeline 85c0ef511c27badeb5db2e2dfb1bc651 https://www.encodeproject.org/files/ENCFF266PEK/@@download/ENCFF266PEK.bam mm10 released low read length, low read depth ENCFF543FFM bam alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUE, ENCFF018NEO 592166485 ENCODE Processing Pipeline 4219afe175c87afe8e421b5795431465 https://www.encodeproject.org/files/ENCFF543FFM/@@download/ENCFF543FFM.bam mm10 released low read length, low read depth ENCFF705GWF bam alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTZ, ENCFF018NEO 660866427 ENCODE Processing Pipeline 5e8c2f61c8b15ee6b157aeb85dd6b93a https://www.encodeproject.org/files/ENCFF705GWF/@@download/ENCFF705GWF.bam mm10 released low read length, low read depth ENCFF386HXV bed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF543FFM, ENCFF856WFI, ENCFF886TCK 572323 ENCODE Processing Pipeline 0ecc66851bd2fc89b19fc5bf6c2d8b18 https://www.encodeproject.org/files/ENCFF386HXV/@@download/ENCFF386HXV.bed.gz mm10 released low read length, low read depth ENCFF653TWA bed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF705GWF, ENCFF856WFI, ENCFF886TCK 618476 ENCODE Processing Pipeline 5b10b33f10e9e4077691106e329a1bb3 https://www.encodeproject.org/files/ENCFF653TWA/@@download/ENCFF653TWA.bed.gz mm10 released low read length, low read depth ENCFF824IUR bed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF543FFM, ENCFF705GWF, ENCFF856WFI, ENCFF886TCK 573698 ENCODE Processing Pipeline 76680121910bef957b71dbe63ef70a33 https://www.encodeproject.org/files/ENCFF824IUR/@@download/ENCFF824IUR.bed.gz mm10 released low read length, low read depth ENCFF829HRC bigBed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF386HXV 1876947 ENCODE Processing Pipeline aafce42e56346a53632f23df7a7de521 https://www.encodeproject.org/files/ENCFF829HRC/@@download/ENCFF829HRC.bigBed mm10 released low read length, low read depth ENCFF336MDK bigBed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF653TWA 1983084 ENCODE Processing Pipeline 278358e9f0dcaea26e2160e9b792c70b https://www.encodeproject.org/files/ENCFF336MDK/@@download/ENCFF336MDK.bigBed mm10 released low read length, low read depth ENCFF239RVZ bigBed narrowPeak peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF824IUR 1872503 ENCODE Processing Pipeline 6199f9cddc35f2521196c57ff4426b6e https://www.encodeproject.org/files/ENCFF239RVZ/@@download/ENCFF239RVZ.bigBed mm10 released low read length, low read depth ENCFF449EZQ bigWig signal p-value ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF543FFM, ENCFF856WFI, ENCFF886TCK 305155819 ENCODE Processing Pipeline caf969642574fa3c3d8b4d58d979158a https://www.encodeproject.org/files/ENCFF449EZQ/@@download/ENCFF449EZQ.bigWig mm10 released low read length, low read depth ENCFF069GZS bigWig signal p-value ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF705GWF, ENCFF856WFI, ENCFF886TCK 338543664 ENCODE Processing Pipeline d9a24b767a03629a88e2348e97a92cb2 https://www.encodeproject.org/files/ENCFF069GZS/@@download/ENCFF069GZS.bigWig mm10 released low read length, low read depth ENCFF996JUA bigWig signal p-value ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF543FFM, ENCFF705GWF, ENCFF856WFI, ENCFF886TCK 494419001 ENCODE Processing Pipeline 2622494852c32530ef2e56d3801f5528 https://www.encodeproject.org/files/ENCFF996JUA/@@download/ENCFF996JUA.bigWig mm10 released low read length, low read depth ENCFF522IPJ bigWig fold change over control ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF543FFM, ENCFF856WFI, ENCFF886TCK 271087001 ENCODE Processing Pipeline 0d96f67ec3981e86595043fa1f190ee2 https://www.encodeproject.org/files/ENCFF522IPJ/@@download/ENCFF522IPJ.bigWig mm10 released low read length, low read depth ENCFF975GBA bigWig fold change over control ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF705GWF, ENCFF856WFI, ENCFF886TCK 288309924 ENCODE Processing Pipeline 46b2c731d8801f1fde58c9aee87055f5 https://www.encodeproject.org/files/ENCFF975GBA/@@download/ENCFF975GBA.bigWig mm10 released low read length, low read depth ENCFF564SDZ bigWig fold change over control ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF543FFM, ENCFF705GWF, ENCFF856WFI, ENCFF886TCK 470501344 ENCODE Processing Pipeline 0a8ce045ec9e8136165baa343058c300 https://www.encodeproject.org/files/ENCFF564SDZ/@@download/ENCFF564SDZ.bigWig mm10 released low read length, low read depth ENCFF678FCR bed narrowPeak replicated peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF386HXV, ENCFF653TWA, ENCFF824IUR 696471 ENCODE Processing Pipeline 7f0c9d2a79e0631ac3acc9a12c309ccd https://www.encodeproject.org/files/ENCFF678FCR/@@download/ENCFF678FCR.bed.gz mm10 released low read length, low read depth ENCFF903YYZ bigBed narrowPeak replicated peaks ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF678FCR 1676773 ENCODE Processing Pipeline 635f7132dad95e2b1ec35c43acbfce1d https://www.encodeproject.org/files/ENCFF903YYZ/@@download/ENCFF903YYZ.bigBed mm10 released low read length, low read depth ENCFF002BWS fastq reads ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1326348600 Bing Ren, UCSD ec960a1a97ef44fb116e922be058b05e SRA:SRR3651438 https://www.encodeproject.org/files/ENCFF002BWS/@@download/ENCFF002BWS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXL/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF002BWU fastq reads ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1475203379 Bing Ren, UCSD 629ec73cdd6173383a4d32303b9ba2fc SRA:SRR3651439 https://www.encodeproject.org/files/ENCFF002BWU/@@download/ENCFF002BWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXM/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF419DCN bam alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWS, ENCFF806TVZ 970101244 ENCODE Processing Pipeline 5d07e22bfdc9088517936a555219625e https://www.encodeproject.org/files/ENCFF419DCN/@@download/ENCFF419DCN.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF278PDK bam alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWU, ENCFF806TVZ 1060682310 ENCODE Processing Pipeline 86e2d141993ba666ac1355d10a65b800 https://www.encodeproject.org/files/ENCFF278PDK/@@download/ENCFF278PDK.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF045OSW bigBed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF406HOJ 1845966 ENCODE Processing Pipeline 0c523b0023ebf4a84a678f387a708818 https://www.encodeproject.org/files/ENCFF045OSW/@@download/ENCFF045OSW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF218AHR bed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF278PDK, ENCFF395ALO, ENCFF419DCN, ENCFF956BKJ 539038 ENCODE Processing Pipeline e410675276b791ba17601de648023685 https://www.encodeproject.org/files/ENCFF218AHR/@@download/ENCFF218AHR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF406HOJ bed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF278PDK, ENCFF395ALO, ENCFF956BKJ 569554 ENCODE Processing Pipeline f816d8d7912128fedf597033f73bc790 https://www.encodeproject.org/files/ENCFF406HOJ/@@download/ENCFF406HOJ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF211HWW bigBed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF198WAG 1810590 ENCODE Processing Pipeline b02854c39395d78e5dfdf22abcba7025 https://www.encodeproject.org/files/ENCFF211HWW/@@download/ENCFF211HWW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF036FSR bigBed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF218AHR 1737256 ENCODE Processing Pipeline aaa4967b37da4396f6e0ae43b167aab1 https://www.encodeproject.org/files/ENCFF036FSR/@@download/ENCFF036FSR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF198WAG bed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF419DCN, ENCFF956BKJ 557001 ENCODE Processing Pipeline 9300d11b123e1e5b796fcc82f41dd166 https://www.encodeproject.org/files/ENCFF198WAG/@@download/ENCFF198WAG.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF873QBU bigWig signal p-value ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF419DCN, ENCFF956BKJ 380395621 ENCODE Processing Pipeline 024ec238989f6abd2c5fba742224d8df https://www.encodeproject.org/files/ENCFF873QBU/@@download/ENCFF873QBU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF628GOG bigWig signal p-value ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF278PDK, ENCFF395ALO, ENCFF956BKJ 374463629 ENCODE Processing Pipeline fcf928886deb0678c4440929ef4ffcd1 https://www.encodeproject.org/files/ENCFF628GOG/@@download/ENCFF628GOG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF890KKL bigWig signal p-value ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF278PDK, ENCFF395ALO, ENCFF419DCN, ENCFF956BKJ 439747739 ENCODE Processing Pipeline f965a2f738a0dc3f1a4b4d45b8f2c532 https://www.encodeproject.org/files/ENCFF890KKL/@@download/ENCFF890KKL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF523UHY bigWig fold change over control ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF419DCN, ENCFF956BKJ 338290807 ENCODE Processing Pipeline 2cb34d1ad477d342aabf60305934887c https://www.encodeproject.org/files/ENCFF523UHY/@@download/ENCFF523UHY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF024LJP bigWig fold change over control ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF278PDK, ENCFF395ALO, ENCFF956BKJ 362615251 ENCODE Processing Pipeline 2f4f0e1fb13ae4212eb4c67a47ead271 https://www.encodeproject.org/files/ENCFF024LJP/@@download/ENCFF024LJP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF664JSQ bigWig fold change over control ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF278PDK, ENCFF395ALO, ENCFF419DCN, ENCFF956BKJ 553918367 ENCODE Processing Pipeline f7922979931435450e3373ff56941d60 https://www.encodeproject.org/files/ENCFF664JSQ/@@download/ENCFF664JSQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF537UKO bed narrowPeak replicated peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF198WAG, ENCFF218AHR, ENCFF406HOJ 712735 ENCODE Processing Pipeline b0e01a1fc8e428d310be26f1f68f63a3 https://www.encodeproject.org/files/ENCFF537UKO/@@download/ENCFF537UKO.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF412HWP bigBed narrowPeak replicated peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF537UKO 1695904 ENCODE Processing Pipeline c8879050aaa1f6b04213edc5d5fc2c9e https://www.encodeproject.org/files/ENCFF412HWP/@@download/ENCFF412HWP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF178VVR bam unfiltered alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWS, ENCFF018NEO 1547811509 ENCODE Processing Pipeline 2283b24b0d2310b7a9538d312055315b https://www.encodeproject.org/files/ENCFF178VVR/@@download/ENCFF178VVR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF648WFX bam unfiltered alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWU, ENCFF018NEO 1713484819 ENCODE Processing Pipeline d1aba16642a17f29b2ea8f137289e02d https://www.encodeproject.org/files/ENCFF648WFX/@@download/ENCFF648WFX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF241LIF bam alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWU, ENCFF018NEO 1060530266 ENCODE Processing Pipeline 5c7691acf3901cf73d0f547f3abfc23a https://www.encodeproject.org/files/ENCFF241LIF/@@download/ENCFF241LIF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF352BZY bam alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWS, ENCFF018NEO 969968512 ENCODE Processing Pipeline 6b550a0b580258eb6818bba236f098b1 https://www.encodeproject.org/files/ENCFF352BZY/@@download/ENCFF352BZY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF257FQZ bed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF241LIF, ENCFF488PXJ 475938 ENCODE Processing Pipeline 80047c7ae0e5d1f2dc63a0e9b362f81b https://www.encodeproject.org/files/ENCFF257FQZ/@@download/ENCFF257FQZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF603AXY bigBed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF774ADG 1738368 ENCODE Processing Pipeline b357bcb33214fd25cfdd12cb3fa1795d https://www.encodeproject.org/files/ENCFF603AXY/@@download/ENCFF603AXY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF774ADG bed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF241LIF, ENCFF352BZY, ENCFF488PXJ 539798 ENCODE Processing Pipeline 439c9242d52377d58d8912002adb6b7b https://www.encodeproject.org/files/ENCFF774ADG/@@download/ENCFF774ADG.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF990TJY bed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF352BZY, ENCFF488PXJ 557377 ENCODE Processing Pipeline e2af60bbe5633a28bb307ace712215ae https://www.encodeproject.org/files/ENCFF990TJY/@@download/ENCFF990TJY.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF927YKN bigBed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF990TJY 1813664 ENCODE Processing Pipeline f2e894ede073e8d30c56f2c1c3e4fe48 https://www.encodeproject.org/files/ENCFF927YKN/@@download/ENCFF927YKN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF305UKU bigBed narrowPeak peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF257FQZ 1629095 ENCODE Processing Pipeline fab8b8b99efe30f989064086fb33a07b https://www.encodeproject.org/files/ENCFF305UKU/@@download/ENCFF305UKU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF301COC bigWig signal p-value ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF352BZY, ENCFF488PXJ 349911026 ENCODE Processing Pipeline 1f445f385e7fb1b7d2d7f29cc5752a7f https://www.encodeproject.org/files/ENCFF301COC/@@download/ENCFF301COC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF211NEQ bigWig signal p-value ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF241LIF, ENCFF488PXJ 253498421 ENCODE Processing Pipeline 9e7a22f26c94b2bf5946c608dd53002c https://www.encodeproject.org/files/ENCFF211NEQ/@@download/ENCFF211NEQ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF787DWM bigWig signal p-value ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF241LIF, ENCFF352BZY, ENCFF488PXJ 441839138 ENCODE Processing Pipeline c4e5c9228d0a0b50b584d5b709462fa9 https://www.encodeproject.org/files/ENCFF787DWM/@@download/ENCFF787DWM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF607NJF bigWig fold change over control ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF352BZY, ENCFF488PXJ 338553595 ENCODE Processing Pipeline 55682735d803a30cf59fbf4414d56c3e https://www.encodeproject.org/files/ENCFF607NJF/@@download/ENCFF607NJF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF108BUP bigWig fold change over control ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF241LIF, ENCFF488PXJ 297020409 ENCODE Processing Pipeline 4f03241c5e68ee285dd9d0448f8589ab https://www.encodeproject.org/files/ENCFF108BUP/@@download/ENCFF108BUP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF965GZP bed narrowPeak replicated peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF257FQZ, ENCFF774ADG, ENCFF990TJY 700674 ENCODE Processing Pipeline 0af7ffd7b78c823ef3d45f35a04e3f1e https://www.encodeproject.org/files/ENCFF965GZP/@@download/ENCFF965GZP.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF041JZL bigWig fold change over control ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF241LIF, ENCFF352BZY, ENCFF488PXJ 555396086 ENCODE Processing Pipeline 9b40a385f168cbce09c6517266b995cd https://www.encodeproject.org/files/ENCFF041JZL/@@download/ENCFF041JZL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF975GYU bigBed narrowPeak replicated peaks ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF965GZP 1669155 ENCODE Processing Pipeline 2dca256b0884c6f2c2c04071d769a9df https://www.encodeproject.org/files/ENCFF975GYU/@@download/ENCFF975GYU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF001KII bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KIO 319503123 Bing Ren, UCSD 01590075cc54e922611412c277c2e9b1 https://www.encodeproject.org/files/ENCFF001KII/@@download/ENCFF001KII.bam mm9 released low read length insufficient read depth ENCFF001KIJ bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KIU 295510618 Bing Ren, UCSD 0e990adaecdfb1d26b3b4510b2ec876c https://www.encodeproject.org/files/ENCFF001KIJ/@@download/ENCFF001KIJ.bam mm9 released low read length insufficient read depth ENCFF001KIN bigWig signal ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KII, ENCFF001KIJ 72606075 Bing Ren, UCSD 1378baf570b746881cb1bb58c144e8b4 https://www.encodeproject.org/files/ENCFF001KIN/@@download/ENCFF001KIN.bigWig mm9 released low read length insufficient read depth ENCFF001KIO fastq reads ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 465975240 Bing Ren, UCSD 558f3aff0887bd6fabed83fb61aa685c https://www.encodeproject.org/files/ENCFF001KIO/@@download/ENCFF001KIO.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth ENCFF001KIU fastq reads ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 377010289 Bing Ren, UCSD 30864fac2b7aef0c97943fa375ad0249 https://www.encodeproject.org/files/ENCFF001KIU/@@download/ENCFF001KIU.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth ENCFF961XGJ bam unfiltered alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KIU, ENCFF806TVZ 455676432 J. Michael Cherry, Stanford 76d48e400ad2e469bb9f37ac9443f483 https://www.encodeproject.org/files/ENCFF961XGJ/@@download/ENCFF961XGJ.bam mm10-minimal archived low read length insufficient read depth ENCFF730AAO bam unfiltered alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KIO, ENCFF806TVZ 548989328 J. Michael Cherry, Stanford 13eb533066b5753ea167144194851683 https://www.encodeproject.org/files/ENCFF730AAO/@@download/ENCFF730AAO.bam mm10-minimal archived low read length insufficient read depth ENCFF419RGB bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KIO, ENCFF806TVZ 371112873 ENCODE Processing Pipeline 20a39fd2fe802bf29e8749426643ecc9 https://www.encodeproject.org/files/ENCFF419RGB/@@download/ENCFF419RGB.bam mm10-minimal archived low read length insufficient read depth ENCFF452QHE bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KIU, ENCFF806TVZ 316332156 ENCODE Processing Pipeline c0f99c1c76e597dd760fb4e65dba75bb https://www.encodeproject.org/files/ENCFF452QHE/@@download/ENCFF452QHE.bam mm10-minimal archived low read length insufficient read depth ENCFF413NSB bam unfiltered alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIU, ENCFF018NEO 456573493 ENCODE Processing Pipeline 0ba48dc854eb1dfd472fe2c6c6daace6 https://www.encodeproject.org/files/ENCFF413NSB/@@download/ENCFF413NSB.bam mm10 released low read length insufficient read depth ENCFF632ZRO bam unfiltered alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KIO, ENCFF018NEO 549826128 ENCODE Processing Pipeline b093c086cd8080686d96883d777955fc https://www.encodeproject.org/files/ENCFF632ZRO/@@download/ENCFF632ZRO.bam mm10 released low read length insufficient read depth ENCFF951GMQ bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KIO, ENCFF018NEO 370975011 ENCODE Processing Pipeline 88309e602fc21251e8965c75bbb710d7 https://www.encodeproject.org/files/ENCFF951GMQ/@@download/ENCFF951GMQ.bam mm10 released low read length insufficient read depth ENCFF842YLI bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIU, ENCFF018NEO 316213662 ENCODE Processing Pipeline 14d4eb6d99bc489f97cef069bcca94c0 https://www.encodeproject.org/files/ENCFF842YLI/@@download/ENCFF842YLI.bam mm10 released low read length insufficient read depth ENCFF688PRB fastq reads ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 1 50 single-ended 1980686861 Bing Ren, UCSD 4833158aac8462c790b82075d590fd6c SRA:SRR3651549 https://www.encodeproject.org/files/ENCFF688PRB/@@download/ENCFF688PRB.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released inconsistent platforms ENCFF216RBU fastq reads ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 1 50 single-ended 2141804439 Bing Ren, UCSD 561cd5fd4e37d19ec4aabc591ba5d313 SRA:SRR3651548 https://www.encodeproject.org/files/ENCFF216RBU/@@download/ENCFF216RBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released inconsistent platforms ENCFF977RBF bam alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF216RBU, ENCFF806TVZ 1419575483 ENCODE Processing Pipeline 27dc11f037009397295f959567edac5b https://www.encodeproject.org/files/ENCFF977RBF/@@download/ENCFF977RBF.bam mm10-minimal archived inconsistent platforms ENCFF572XEN bam alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF688PRB, ENCFF806TVZ 1253802180 ENCODE Processing Pipeline 177e38e1c788975f5359b3637bc00ef9 https://www.encodeproject.org/files/ENCFF572XEN/@@download/ENCFF572XEN.bam mm10-minimal archived inconsistent platforms ENCFF199OIH bigBed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF159ZDV 1992298 ENCODE Processing Pipeline f0ad4de3227f3d5d26d9ead095f7ff2f https://www.encodeproject.org/files/ENCFF199OIH/@@download/ENCFF199OIH.bigBed mm10-minimal archived inconsistent platforms ENCFF159ZDV bed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF977RBF 929306 ENCODE Processing Pipeline 54cd423b135bf72d46ed8f9e4136a90a https://www.encodeproject.org/files/ENCFF159ZDV/@@download/ENCFF159ZDV.bed.gz mm10-minimal archived inconsistent platforms ENCFF478VVN bed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF572XEN, ENCFF977RBF 1233610 ENCODE Processing Pipeline 27557f62b39f0254fc2ef97ca5d94d31 https://www.encodeproject.org/files/ENCFF478VVN/@@download/ENCFF478VVN.bed.gz mm10-minimal archived inconsistent platforms ENCFF858TJL bed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF572XEN 1347061 ENCODE Processing Pipeline 008c0a391270287d222709a36166be95 https://www.encodeproject.org/files/ENCFF858TJL/@@download/ENCFF858TJL.bed.gz mm10-minimal archived inconsistent platforms ENCFF216JTO bigBed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF478VVN 2448339 ENCODE Processing Pipeline a5f75ed989de0fb828b65e6b202fcf1f https://www.encodeproject.org/files/ENCFF216JTO/@@download/ENCFF216JTO.bigBed mm10-minimal archived inconsistent platforms ENCFF660EKK bigBed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF858TJL 2666054 ENCODE Processing Pipeline 85e5a0b85c0d44b13517460dc243fc03 https://www.encodeproject.org/files/ENCFF660EKK/@@download/ENCFF660EKK.bigBed mm10-minimal archived inconsistent platforms ENCFF278UWP bigWig signal p-value ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF977RBF 766218711 ENCODE Processing Pipeline 113c56d0596889749989176629d2b015 https://www.encodeproject.org/files/ENCFF278UWP/@@download/ENCFF278UWP.bigWig mm10-minimal archived inconsistent platforms ENCFF547LLW bigWig signal p-value ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF572XEN 693956814 ENCODE Processing Pipeline 6ec293571f89100995b563c92c623a26 https://www.encodeproject.org/files/ENCFF547LLW/@@download/ENCFF547LLW.bigWig mm10-minimal archived inconsistent platforms ENCFF410FXS bigWig signal p-value ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF572XEN, ENCFF977RBF 731904798 ENCODE Processing Pipeline d20c6855d34b0bc476ce8fbb10bb2e4e https://www.encodeproject.org/files/ENCFF410FXS/@@download/ENCFF410FXS.bigWig mm10-minimal archived inconsistent platforms ENCFF235AJK bigWig fold change over control ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF572XEN 661800806 ENCODE Processing Pipeline ac2ab01602350fc808272f3b809cf288 https://www.encodeproject.org/files/ENCFF235AJK/@@download/ENCFF235AJK.bigWig mm10-minimal archived inconsistent platforms ENCFF397FUX bigWig fold change over control ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF977RBF 729420021 ENCODE Processing Pipeline c98018cf36d61b01441e80e52ad6f0d1 https://www.encodeproject.org/files/ENCFF397FUX/@@download/ENCFF397FUX.bigWig mm10-minimal archived inconsistent platforms ENCFF680WHR bed narrowPeak replicated peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF159ZDV, ENCFF478VVN, ENCFF858TJL 346707 ENCODE Processing Pipeline 258fa14f8bc43ed40432974ed6620567 https://www.encodeproject.org/files/ENCFF680WHR/@@download/ENCFF680WHR.bed.gz mm10-minimal archived inconsistent platforms ENCFF198ETQ bigWig fold change over control ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF572XEN, ENCFF977RBF 1005929888 ENCODE Processing Pipeline 802e6c6d8ba04b33ab26733389694e86 https://www.encodeproject.org/files/ENCFF198ETQ/@@download/ENCFF198ETQ.bigWig mm10-minimal archived inconsistent platforms ENCFF610VFC bigBed narrowPeak replicated peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF680WHR 771519 ENCODE Processing Pipeline fd2f8930ea6ed14b94a490544c3ca53f https://www.encodeproject.org/files/ENCFF610VFC/@@download/ENCFF610VFC.bigBed mm10-minimal archived inconsistent platforms ENCFF436NGF bam unfiltered alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 50 ENCFF018NEO, ENCFF688PRB 2417128176 ENCODE Processing Pipeline c85f2d06af934a0240dec047833a650d https://www.encodeproject.org/files/ENCFF436NGF/@@download/ENCFF436NGF.bam mm10 released inconsistent platforms ENCFF920BPD bam unfiltered alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 50 ENCFF018NEO, ENCFF216RBU 2613685486 ENCODE Processing Pipeline dfd7d01229b8480c1fc201bb43111dc0 https://www.encodeproject.org/files/ENCFF920BPD/@@download/ENCFF920BPD.bam mm10 released inconsistent platforms ENCFF449SWA bam alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 50 ENCFF018NEO, ENCFF688PRB 1253195405 ENCODE Processing Pipeline c61bbfffd31ec73e3bbaf50f27a4a5d9 https://www.encodeproject.org/files/ENCFF449SWA/@@download/ENCFF449SWA.bam mm10 released inconsistent platforms ENCFF159LUU bam alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 50 ENCFF018NEO, ENCFF216RBU 1418905182 ENCODE Processing Pipeline 22bd0a22dc5f6fa18f34dd440de84e5e https://www.encodeproject.org/files/ENCFF159LUU/@@download/ENCFF159LUU.bam mm10 released inconsistent platforms ENCFF145PGV bigWig signal p-value ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF231HNB, ENCFF449SWA 562955853 ENCODE Processing Pipeline 3ccbfe2b117a0f4335e67cf8f2d0a624 https://www.encodeproject.org/files/ENCFF145PGV/@@download/ENCFF145PGV.bigWig mm10 released inconsistent platforms ENCFF167HIH bed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF231HNB, ENCFF449SWA 1374118 ENCODE Processing Pipeline 7071db78e4f5e24c395a90cb5c79cffd https://www.encodeproject.org/files/ENCFF167HIH/@@download/ENCFF167HIH.bed.gz mm10 released inconsistent platforms ENCFF192PQH bed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF159LUU, ENCFF231HNB, ENCFF396QPU, ENCFF449SWA 1252271 ENCODE Processing Pipeline 8c6ba857655e2dd4fea2a8142a0a4e4c https://www.encodeproject.org/files/ENCFF192PQH/@@download/ENCFF192PQH.bed.gz mm10 released inconsistent platforms ENCFF122VZC bed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF159LUU, ENCFF396QPU 763733 ENCODE Processing Pipeline 2ad8fd29de9f117dec5013901b5b2ba6 https://www.encodeproject.org/files/ENCFF122VZC/@@download/ENCFF122VZC.bed.gz mm10 released inconsistent platforms ENCFF520RJA bigBed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF167HIH 2710112 ENCODE Processing Pipeline a8a224a0838a7d8dd1a58280662624c2 https://www.encodeproject.org/files/ENCFF520RJA/@@download/ENCFF520RJA.bigBed mm10 released inconsistent platforms ENCFF619ZXD bigBed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF192PQH 2486722 ENCODE Processing Pipeline eb61b5ffda9368125c34614e314f6659 https://www.encodeproject.org/files/ENCFF619ZXD/@@download/ENCFF619ZXD.bigBed mm10 released inconsistent platforms ENCFF424FWY bigBed narrowPeak peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF122VZC 1716984 ENCODE Processing Pipeline b19e922aaa70bebebc208a3e82b4a0de https://www.encodeproject.org/files/ENCFF424FWY/@@download/ENCFF424FWY.bigBed mm10 released inconsistent platforms ENCFF365UOQ bigWig signal p-value ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF159LUU, ENCFF396QPU 522657830 ENCODE Processing Pipeline 5cecb270b472e471af2b33b40dbee30b https://www.encodeproject.org/files/ENCFF365UOQ/@@download/ENCFF365UOQ.bigWig mm10 released inconsistent platforms ENCFF576NFM bigWig fold change over control ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 ENCFF159LUU, ENCFF396QPU 625998837 ENCODE Processing Pipeline dd96b68e376a950d92d1cc0fe4848889 https://www.encodeproject.org/files/ENCFF576NFM/@@download/ENCFF576NFM.bigWig mm10 released inconsistent platforms ENCFF492QTF bigWig fold change over control ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 ENCFF231HNB, ENCFF449SWA 580675960 ENCODE Processing Pipeline 55dda107e14bc0a4cb4628b24383e075 https://www.encodeproject.org/files/ENCFF492QTF/@@download/ENCFF492QTF.bigWig mm10 released inconsistent platforms ENCFF952UCX bigWig signal p-value ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF159LUU, ENCFF231HNB, ENCFF396QPU, ENCFF449SWA 1061958876 ENCODE Processing Pipeline 9aa39e3b45ba27068f7dcd83c464c1be https://www.encodeproject.org/files/ENCFF952UCX/@@download/ENCFF952UCX.bigWig mm10 released inconsistent platforms ENCFF258AAD bigWig fold change over control ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF159LUU, ENCFF231HNB, ENCFF396QPU, ENCFF449SWA 1145435360 ENCODE Processing Pipeline 0560e6932bd072f4c21e8edeaf99cfd3 https://www.encodeproject.org/files/ENCFF258AAD/@@download/ENCFF258AAD.bigWig mm10 released inconsistent platforms ENCFF825AMV bed narrowPeak replicated peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF122VZC, ENCFF167HIH, ENCFF192PQH 314665 ENCODE Processing Pipeline e5a323125c0eae043c2d1b8e632855fb https://www.encodeproject.org/files/ENCFF825AMV/@@download/ENCFF825AMV.bed.gz mm10 released inconsistent platforms ENCFF633FHQ bigBed narrowPeak replicated peaks ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1, 2 ENCFF825AMV 709184 ENCODE Processing Pipeline 5f9b27dd7459536cb771abde5b5dfb00 https://www.encodeproject.org/files/ENCFF633FHQ/@@download/ENCFF633FHQ.bigBed mm10 released inconsistent platforms ENCFF076CNP fastq reads ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2737123419 Bing Ren, UCSD 02b404689bf0a919b909bfa07e3b7a82 SRA:SRR3652941 https://www.encodeproject.org/files/ENCFF076CNP/@@download/ENCFF076CNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF409MDS fastq reads ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2055256822 Bing Ren, UCSD c976ca431bcfc5edafe271f71272a201 SRA:SRR3652943 https://www.encodeproject.org/files/ENCFF409MDS/@@download/ENCFF409MDS.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF494YOF fastq reads ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1085407018 Bing Ren, UCSD 2b5f24974145a6414536da9c541208b2 SRA:SRR3652942 https://www.encodeproject.org/files/ENCFF494YOF/@@download/ENCFF494YOF.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF852SEP fastq reads ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1407487010 Bing Ren, UCSD e5425b931e9b6e021df5d04128705f44 SRA:SRR3652944 https://www.encodeproject.org/files/ENCFF852SEP/@@download/ENCFF852SEP.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF199LAC bam alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF076CNP, ENCFF494YOF, ENCFF806TVZ 3162747683 ENCODE Processing Pipeline 44140a4fb01666b75555f3f42f63ff89 https://www.encodeproject.org/files/ENCFF199LAC/@@download/ENCFF199LAC.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF422VGL bam alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF409MDS, ENCFF806TVZ, ENCFF852SEP 3010910376 ENCODE Processing Pipeline 00cea4bc69f7ad372e29fc3c68343cb4 https://www.encodeproject.org/files/ENCFF422VGL/@@download/ENCFF422VGL.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF382LZU bed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF422VGL, ENCFF476GUX, ENCFF592WTG 1992082 ENCODE Processing Pipeline 0f2609dbe511e4b973727ceb242819c8 https://www.encodeproject.org/files/ENCFF382LZU/@@download/ENCFF382LZU.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF978ZPE bigBed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF305LDU 3313852 ENCODE Processing Pipeline 809d535e46f0c7874bc0aa868e3e85fd https://www.encodeproject.org/files/ENCFF978ZPE/@@download/ENCFF978ZPE.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF305LDU bed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF199LAC, ENCFF476GUX, ENCFF592WTG 1649806 ENCODE Processing Pipeline 1ed27273d3a094cff5bf3defc89eecd8 https://www.encodeproject.org/files/ENCFF305LDU/@@download/ENCFF305LDU.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF118ORL bed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF199LAC, ENCFF422VGL, ENCFF476GUX, ENCFF592WTG 1499079 ENCODE Processing Pipeline 5f946330c55c250ee31c3f198d2fee63 https://www.encodeproject.org/files/ENCFF118ORL/@@download/ENCFF118ORL.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF237ZUQ bigBed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF382LZU 3895539 ENCODE Processing Pipeline a688ea625c066d87fa1a4c5e4b93fa86 https://www.encodeproject.org/files/ENCFF237ZUQ/@@download/ENCFF237ZUQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF146EEO bigBed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF118ORL 3626095 ENCODE Processing Pipeline 767e35715dc4c8c1d4639dfeb0e614e2 https://www.encodeproject.org/files/ENCFF146EEO/@@download/ENCFF146EEO.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF604GWY bigWig signal p-value ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF199LAC, ENCFF476GUX, ENCFF592WTG 873014431 ENCODE Processing Pipeline 5f2990a73c58cedbb965adbcf4dde840 https://www.encodeproject.org/files/ENCFF604GWY/@@download/ENCFF604GWY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF387FQJ bigWig signal p-value ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF422VGL, ENCFF476GUX, ENCFF592WTG 916060218 ENCODE Processing Pipeline 3f48a818cb53fa16a10e1e26367a76be https://www.encodeproject.org/files/ENCFF387FQJ/@@download/ENCFF387FQJ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF578FSH bigWig signal p-value ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF199LAC, ENCFF422VGL, ENCFF476GUX, ENCFF592WTG 1277448736 ENCODE Processing Pipeline 2e66bc750af59d4b0646ea473cbfb7ee https://www.encodeproject.org/files/ENCFF578FSH/@@download/ENCFF578FSH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF252PDO bigWig fold change over control ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF199LAC, ENCFF476GUX, ENCFF592WTG 1155465965 ENCODE Processing Pipeline 54b126ee96bf252b9fef62923d68a52e https://www.encodeproject.org/files/ENCFF252PDO/@@download/ENCFF252PDO.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF019NTW bigWig fold change over control ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF199LAC, ENCFF422VGL, ENCFF476GUX, ENCFF592WTG 1610564040 ENCODE Processing Pipeline df9570757aacc2d98b2e8cb91dcee505 https://www.encodeproject.org/files/ENCFF019NTW/@@download/ENCFF019NTW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF088VKH bigWig fold change over control ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF422VGL, ENCFF476GUX, ENCFF592WTG 1109814788 ENCODE Processing Pipeline 348ba5647040b048684cc688086540e3 https://www.encodeproject.org/files/ENCFF088VKH/@@download/ENCFF088VKH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF496YQP bed narrowPeak replicated peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF118ORL, ENCFF305LDU, ENCFF382LZU 1271210 ENCODE Processing Pipeline 43913d0bba9ebb7515b08900d1c1f3e6 https://www.encodeproject.org/files/ENCFF496YQP/@@download/ENCFF496YQP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF684JOQ bigBed narrowPeak replicated peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF496YQP 2586645 ENCODE Processing Pipeline 79ab68024442df94f94dfae748a27eb0 https://www.encodeproject.org/files/ENCFF684JOQ/@@download/ENCFF684JOQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF977IBX bam alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF409MDS, ENCFF852SEP 3010432813 ENCODE Processing Pipeline f4be7934deb4fcf04681499d288f4d98 https://www.encodeproject.org/files/ENCFF977IBX/@@download/ENCFF977IBX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF050HQL bam unfiltered alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF409MDS, ENCFF852SEP 4126571207 ENCODE Processing Pipeline 88c03099325080ce4377cce032b91ce9 https://www.encodeproject.org/files/ENCFF050HQL/@@download/ENCFF050HQL.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF139UWI bam alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF076CNP, ENCFF494YOF 3162184744 ENCODE Processing Pipeline f81934af8b9a170cbae92e89cc9bbd61 https://www.encodeproject.org/files/ENCFF139UWI/@@download/ENCFF139UWI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF012JQY bam unfiltered alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF076CNP, ENCFF494YOF 4529899115 ENCODE Processing Pipeline 8eb8a312e783798812436f3e93c7a758 https://www.encodeproject.org/files/ENCFF012JQY/@@download/ENCFF012JQY.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF069BFV bed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF139UWI, ENCFF285XPR, ENCFF627RIT 1672724 ENCODE Processing Pipeline da4b18ff59d7d05a3fc7c0110d861185 https://www.encodeproject.org/files/ENCFF069BFV/@@download/ENCFF069BFV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF504PDY bed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF139UWI, ENCFF285XPR, ENCFF627RIT, ENCFF977IBX 1982940 ENCODE Processing Pipeline b89b3604319880987b759cf05c858b52 https://www.encodeproject.org/files/ENCFF504PDY/@@download/ENCFF504PDY.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF064OBA bed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF977IBX 1430255 ENCODE Processing Pipeline ddbce9622a69818fb3db34689a17eaca https://www.encodeproject.org/files/ENCFF064OBA/@@download/ENCFF064OBA.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF429PVB bigBed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF069BFV 3334672 ENCODE Processing Pipeline 0f940dc941bda0cdf836f644551da1c5 https://www.encodeproject.org/files/ENCFF429PVB/@@download/ENCFF429PVB.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF173UZP bigBed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF064OBA 2801176 ENCODE Processing Pipeline bb277d80a2047da51ed2d7b6d6a5e4db https://www.encodeproject.org/files/ENCFF173UZP/@@download/ENCFF173UZP.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF023QLE bigBed narrowPeak peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF504PDY 4819468 ENCODE Processing Pipeline 30f6b68dcc437441d9101e625922b868 https://www.encodeproject.org/files/ENCFF023QLE/@@download/ENCFF023QLE.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF291OUN bigWig signal p-value ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF139UWI, ENCFF285XPR, ENCFF627RIT 1037370204 ENCODE Processing Pipeline 751a9a41d8bec2eae9d1e1c5fc9f1a5e https://www.encodeproject.org/files/ENCFF291OUN/@@download/ENCFF291OUN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF283FKO bigWig signal p-value ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF977IBX 864269915 ENCODE Processing Pipeline 8fc3f3dce771c3c4c316acd71079411c https://www.encodeproject.org/files/ENCFF283FKO/@@download/ENCFF283FKO.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF953IBW bigWig signal p-value ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF139UWI, ENCFF285XPR, ENCFF627RIT, ENCFF977IBX 1539349464 ENCODE Processing Pipeline 78755e545ac023594cdc3ef828ea30ee https://www.encodeproject.org/files/ENCFF953IBW/@@download/ENCFF953IBW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF979QHY bigWig fold change over control ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF139UWI, ENCFF285XPR, ENCFF627RIT 1179144481 ENCODE Processing Pipeline 55483f7b39f113595ec6b228e137eb02 https://www.encodeproject.org/files/ENCFF979QHY/@@download/ENCFF979QHY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF007WWW bigWig fold change over control ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF977IBX 939230555 ENCODE Processing Pipeline 7744dbfe7feb47334f3107a1be478ee4 https://www.encodeproject.org/files/ENCFF007WWW/@@download/ENCFF007WWW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF201DBX bigWig fold change over control ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF139UWI, ENCFF285XPR, ENCFF627RIT, ENCFF977IBX 1702394840 ENCODE Processing Pipeline c2a26b96dcdbee2581f00acfc61fb01c https://www.encodeproject.org/files/ENCFF201DBX/@@download/ENCFF201DBX.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF764NLB bed narrowPeak replicated peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF064OBA, ENCFF069BFV, ENCFF504PDY 1270376 ENCODE Processing Pipeline 83c3e6ac6e7bb9414ea779a2b55b3661 https://www.encodeproject.org/files/ENCFF764NLB/@@download/ENCFF764NLB.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF525HMA bigBed narrowPeak replicated peaks ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF764NLB 2567406 ENCODE Processing Pipeline d873d1b2a9d11a10a6c349adb5262bd1 https://www.encodeproject.org/files/ENCFF525HMA/@@download/ENCFF525HMA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF683ENW fastq reads ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2172761485 Bing Ren, UCSD dfb4e6ecafa40a2c66e5a875ca950731 SRA:SRR3653391 https://www.encodeproject.org/files/ENCFF683ENW/@@download/ENCFF683ENW.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF517BQD fastq reads ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2295693891 Bing Ren, UCSD 5ef2e54ba3632b0d0904fe2b908b058c SRA:SRR3653392 https://www.encodeproject.org/files/ENCFF517BQD/@@download/ENCFF517BQD.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF781PRL bam alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF517BQD, ENCFF806TVZ 1654379230 ENCODE Processing Pipeline 3e110957b0007835b9dd553b7c3efd55 https://www.encodeproject.org/files/ENCFF781PRL/@@download/ENCFF781PRL.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF405QAR bam alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF683ENW, ENCFF806TVZ 1534178642 ENCODE Processing Pipeline 73060fe33f710beb078aec0d04d176af https://www.encodeproject.org/files/ENCFF405QAR/@@download/ENCFF405QAR.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF253NCZ bigBed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF854XHP 1899586 ENCODE Processing Pipeline d618f2f87dd5ca2acaf56a2f4944c1c6 https://www.encodeproject.org/files/ENCFF253NCZ/@@download/ENCFF253NCZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF351SZW bigBed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF270TJS 1916029 ENCODE Processing Pipeline 5316b413e57794017e3bad59e7b127b8 https://www.encodeproject.org/files/ENCFF351SZW/@@download/ENCFF351SZW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF956NDW bigBed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF712TSL 1999748 ENCODE Processing Pipeline 7b17f0eb624a97c4fc470b1a6b92913e https://www.encodeproject.org/files/ENCFF956NDW/@@download/ENCFF956NDW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF270TJS bed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF405QAR 643894 ENCODE Processing Pipeline 6a1e059d72b2f629f296836a14d2fc1a https://www.encodeproject.org/files/ENCFF270TJS/@@download/ENCFF270TJS.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF854XHP bed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF781PRL 634681 ENCODE Processing Pipeline 5632f364e9e67f0c30e985f35f63a38f https://www.encodeproject.org/files/ENCFF854XHP/@@download/ENCFF854XHP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF712TSL bed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF405QAR, ENCFF781PRL 690034 ENCODE Processing Pipeline 7335c37244613172d85e8a1671b3f4c7 https://www.encodeproject.org/files/ENCFF712TSL/@@download/ENCFF712TSL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF026YKX bigWig signal p-value ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF405QAR 695742753 ENCODE Processing Pipeline 09b531b0939bd4c9a6ecb3ce40e5768b https://www.encodeproject.org/files/ENCFF026YKX/@@download/ENCFF026YKX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF088NVP bigWig signal p-value ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF781PRL 645392899 ENCODE Processing Pipeline 266925ef5bd4910811dc999e26cba95c https://www.encodeproject.org/files/ENCFF088NVP/@@download/ENCFF088NVP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF340PBV bigWig signal p-value ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF405QAR, ENCFF781PRL 886140049 ENCODE Processing Pipeline 4fff838e6337a3b900733cebe02e93fe https://www.encodeproject.org/files/ENCFF340PBV/@@download/ENCFF340PBV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF072QFI bigWig fold change over control ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF405QAR 650508203 ENCODE Processing Pipeline 73bfa28b33bf3ba7791ad83ab5848ca4 https://www.encodeproject.org/files/ENCFF072QFI/@@download/ENCFF072QFI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF767PRM bigWig fold change over control ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF781PRL 656158070 ENCODE Processing Pipeline b55acdfc386460bdf2ca5cf8a4e228c9 https://www.encodeproject.org/files/ENCFF767PRM/@@download/ENCFF767PRM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF758UZJ bigBed narrowPeak replicated peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF339VLZ 1674606 ENCODE Processing Pipeline 041e51a7f5a63498d26176a0a321b687 https://www.encodeproject.org/files/ENCFF758UZJ/@@download/ENCFF758UZJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF552EGV bigWig fold change over control ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF405QAR, ENCFF781PRL 967926809 ENCODE Processing Pipeline c8ffba94a6dd8c2e5081196848974dac https://www.encodeproject.org/files/ENCFF552EGV/@@download/ENCFF552EGV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF339VLZ bed narrowPeak replicated peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF270TJS, ENCFF712TSL, ENCFF854XHP 735574 ENCODE Processing Pipeline 904c5ea6dbdeada6a7113b4a895c0094 https://www.encodeproject.org/files/ENCFF339VLZ/@@download/ENCFF339VLZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF735RBQ bam unfiltered alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF517BQD 2555937791 ENCODE Processing Pipeline e86a631f5c23b1cf9450e3c3321fa64d https://www.encodeproject.org/files/ENCFF735RBQ/@@download/ENCFF735RBQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF955ZHL bam unfiltered alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF683ENW 2414944787 ENCODE Processing Pipeline 15131492be57d0621d4f6122bd5ec360 https://www.encodeproject.org/files/ENCFF955ZHL/@@download/ENCFF955ZHL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF325ROD bam alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF683ENW 1533924159 ENCODE Processing Pipeline ca1ef491829f7b639d32922154676b07 https://www.encodeproject.org/files/ENCFF325ROD/@@download/ENCFF325ROD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF379RFF bam alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF517BQD 1654106083 ENCODE Processing Pipeline 2fe7d4e3531d21850773bb780a1da2f6 https://www.encodeproject.org/files/ENCFF379RFF/@@download/ENCFF379RFF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF937MVD bed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF325ROD, ENCFF396QPU 634648 ENCODE Processing Pipeline 11da4ba369ab5f234aff50254c28c439 https://www.encodeproject.org/files/ENCFF937MVD/@@download/ENCFF937MVD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF964PYP bed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF379RFF 628252 ENCODE Processing Pipeline b96dba6fce739d5965e8b7a66b878e88 https://www.encodeproject.org/files/ENCFF964PYP/@@download/ENCFF964PYP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF666MLZ bed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF325ROD, ENCFF379RFF, ENCFF396QPU 721025 ENCODE Processing Pipeline 43c203778e892fa1b64a8eb6c4f74907 https://www.encodeproject.org/files/ENCFF666MLZ/@@download/ENCFF666MLZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF725LZB bigBed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF937MVD 1904936 ENCODE Processing Pipeline f1e1b81d753776a50eeb6d20596bee1a https://www.encodeproject.org/files/ENCFF725LZB/@@download/ENCFF725LZB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF760HLF bigBed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF964PYP 1895071 ENCODE Processing Pipeline 2a4191297149877be445384f8995832f https://www.encodeproject.org/files/ENCFF760HLF/@@download/ENCFF760HLF.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF201ZME bigBed narrowPeak peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF666MLZ 2057791 ENCODE Processing Pipeline c22f1bf33c8686956e0df51ad2d2cf01 https://www.encodeproject.org/files/ENCFF201ZME/@@download/ENCFF201ZME.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF051YTW bigWig signal p-value ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF325ROD, ENCFF396QPU 580077368 ENCODE Processing Pipeline 6747a7a4e01257d46ed26670d883d6dc https://www.encodeproject.org/files/ENCFF051YTW/@@download/ENCFF051YTW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF907FHJ bigWig signal p-value ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF379RFF 616853218 ENCODE Processing Pipeline 9a30f2af94901bcb17db7f37ee0a933e https://www.encodeproject.org/files/ENCFF907FHJ/@@download/ENCFF907FHJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF239QWL bigWig signal p-value ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF325ROD, ENCFF379RFF, ENCFF396QPU 1093935375 ENCODE Processing Pipeline b3bdcd79122bd7e1613d3e1a3b2db1b3 https://www.encodeproject.org/files/ENCFF239QWL/@@download/ENCFF239QWL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF673SFF bigWig fold change over control ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF325ROD, ENCFF396QPU 582766348 ENCODE Processing Pipeline c675e713a6bc7a96c188476d8f924f50 https://www.encodeproject.org/files/ENCFF673SFF/@@download/ENCFF673SFF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF890KAA bigWig fold change over control ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF379RFF 599188733 ENCODE Processing Pipeline dd8a5f79724848c3a7ac074b4aca3d97 https://www.encodeproject.org/files/ENCFF890KAA/@@download/ENCFF890KAA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF068KSP bigWig fold change over control ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF325ROD, ENCFF379RFF, ENCFF396QPU 1091148789 ENCODE Processing Pipeline 111d5e72655f5d685b419ae7ac4769c2 https://www.encodeproject.org/files/ENCFF068KSP/@@download/ENCFF068KSP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF685MXX bed narrowPeak replicated peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF666MLZ, ENCFF937MVD, ENCFF964PYP 731885 ENCODE Processing Pipeline 06fa6ab4e1b9386cf723e609153570e2 https://www.encodeproject.org/files/ENCFF685MXX/@@download/ENCFF685MXX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF817BMN bigBed narrowPeak replicated peaks ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF685MXX 1660082 ENCODE Processing Pipeline e52eb5a16e7a94e4ec6ceca240630cb7 https://www.encodeproject.org/files/ENCFF817BMN/@@download/ENCFF817BMN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001MNM bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MNP 724870726 Ross Hardison, PennState 1acdd455b9275d5efb04c9d9bf4659cd https://www.encodeproject.org/files/ENCFF001MNM/@@download/ENCFF001MNM.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MNN bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MNV 1398070950 Ross Hardison, PennState 2bf8b94d738e90dd51cdce3a6506a0ca https://www.encodeproject.org/files/ENCFF001MNN/@@download/ENCFF001MNN.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MNO bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEU 535600 Ross Hardison, PennState d8a6c2ae4fd99992124fd20a4546f342 https://www.encodeproject.org/files/ENCFF001MNO/@@download/ENCFF001MNO.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MNP fastq reads ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 564774383 Ross Hardison, PennState 9075ac7bcb26c6ad9c92e5729e27523e https://www.encodeproject.org/files/ENCFF001MNP/@@download/ENCFF001MNP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MNQ bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEV 489627 Ross Hardison, PennState 004294bc1b11c9258fca8bf47f9c73f3 https://www.encodeproject.org/files/ENCFF001MNQ/@@download/ENCFF001MNQ.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MNR bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEX 451668 Ross Hardison, PennState 8025296ca9a9647c37e0f2a64567b4c5 https://www.encodeproject.org/files/ENCFF001MNR/@@download/ENCFF001MNR.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MNS bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2612594502 Ross Hardison, PennState 2558eafa7ae5c20e7d36677504e0dbe3 https://www.encodeproject.org/files/ENCFF001MNS/@@download/ENCFF001MNS.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MNT bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3122548713 Ross Hardison, PennState e9dfbea84a2b9062f231e5d6cdef5efe https://www.encodeproject.org/files/ENCFF001MNT/@@download/ENCFF001MNT.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MNU bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 4052610359 Ross Hardison, PennState e1b5adab26205c4e06fbbbf782798dbb https://www.encodeproject.org/files/ENCFF001MNU/@@download/ENCFF001MNU.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MNV fastq reads ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1107370733 Ross Hardison, PennState cab53378da43a11ab9a3c918927e9a4c https://www.encodeproject.org/files/ENCFF001MNV/@@download/ENCFF001MNV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF001YEU bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 298243 Ross Hardison, PennState aa39700ec32bb13480653ed76d0e4d3e https://www.encodeproject.org/files/ENCFF001YEU/@@download/ENCFF001YEU.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YEV bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 279211 Ross Hardison, PennState 5b60df8e605ee0b72b14ebd9b73c6f67 https://www.encodeproject.org/files/ENCFF001YEV/@@download/ENCFF001YEV.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YEX bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 223217 Ross Hardison, PennState 5b84c91b8d8f0cbe07fe75c5d24c4756 https://www.encodeproject.org/files/ENCFF001YEX/@@download/ENCFF001YEX.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF004XMS bam unfiltered alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 762619367 ENCODE Processing Pipeline 49679af3b5028ddc06597028adb2c7d3 https://www.encodeproject.org/files/ENCFF004XMS/@@download/ENCFF004XMS.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF680QQJ bam unfiltered alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 1349102273 ENCODE Processing Pipeline 4412069931a63a3ab7ad8cda978e62cf https://www.encodeproject.org/files/ENCFF680QQJ/@@download/ENCFF680QQJ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF553QQS bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 926297627 ENCODE Processing Pipeline 99fa0839ea5c83dd0a5f8266038b7e5d https://www.encodeproject.org/files/ENCFF553QQS/@@download/ENCFF553QQS.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF585RBR bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 534736853 ENCODE Processing Pipeline 1f724a5e005653f6845584d2583c5264 https://www.encodeproject.org/files/ENCFF585RBR/@@download/ENCFF585RBR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF219QWY bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 738278903 ENCODE Processing Pipeline c741683ff1bd86d0ed9c84eb7581c13d https://www.encodeproject.org/files/ENCFF219QWY/@@download/ENCFF219QWY.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF131LGX bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 866766027 ENCODE Processing Pipeline 3b4450324a5cd10d01b1e630e0fb8080 https://www.encodeproject.org/files/ENCFF131LGX/@@download/ENCFF131LGX.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF669WRO bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 1039215842 ENCODE Processing Pipeline ae3276f1f08768a0e5c875a8a0591a0b https://www.encodeproject.org/files/ENCFF669WRO/@@download/ENCFF669WRO.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF045SCM bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 535137517 ENCODE Processing Pipeline fb02c8b6e6be0086f79a32ff0b037da0 https://www.encodeproject.org/files/ENCFF045SCM/@@download/ENCFF045SCM.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF037HAV bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 813078390 ENCODE Processing Pipeline 0e009b251a0b98bfdb0aa487038591b5 https://www.encodeproject.org/files/ENCFF037HAV/@@download/ENCFF037HAV.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF938UFC bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 1055694366 ENCODE Processing Pipeline a44c773bf4520705876be70c65faf977 https://www.encodeproject.org/files/ENCFF938UFC/@@download/ENCFF938UFC.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF925MJG bed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 5490008 ENCODE Processing Pipeline e5b7d532e299a907a9539ef35b8eb022 https://www.encodeproject.org/files/ENCFF925MJG/@@download/ENCFF925MJG.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF550GOV bigBed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF925MJG 11133799 ENCODE Processing Pipeline 05da7f4a4256caf6021f742649bdc6c6 https://www.encodeproject.org/files/ENCFF550GOV/@@download/ENCFF550GOV.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF740XUP bigBed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF983MKP 11328730 ENCODE Processing Pipeline 19380a2af033a6064b3dcb1302cee65f https://www.encodeproject.org/files/ENCFF740XUP/@@download/ENCFF740XUP.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF477PTQ bigBed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF957QMK 11367508 ENCODE Processing Pipeline 2d94182ea2e89b86a9398205437e5a02 https://www.encodeproject.org/files/ENCFF477PTQ/@@download/ENCFF477PTQ.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF983MKP bed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 5651008 ENCODE Processing Pipeline dd3a6e1640555ed6e2c7ffcfb2790f28 https://www.encodeproject.org/files/ENCFF983MKP/@@download/ENCFF983MKP.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF957QMK bed narrowPeak peaks and background as input for IDR ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 6294733 ENCODE Processing Pipeline 7d1f92e141f865ad7442b7c9e06c900f https://www.encodeproject.org/files/ENCFF957QMK/@@download/ENCFF957QMK.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF856JMM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF437CLA 522263 ENCODE Processing Pipeline 8c9b66ac2c8aa0f7e0f6e6f614be2876 https://www.encodeproject.org/files/ENCFF856JMM/@@download/ENCFF856JMM.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF437CLA bed narrowPeak conservative idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF547MET, ENCFF925MJG, ENCFF957QMK, ENCFF983MKP 263884 ENCODE Processing Pipeline 2cccab7ae97ec652dd0c4f3f24c27031 https://www.encodeproject.org/files/ENCFF437CLA/@@download/ENCFF437CLA.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF976DPO bed narrowPeak optimal idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF547MET, ENCFF925MJG, ENCFF957QMK, ENCFF983MKP 272466 ENCODE Processing Pipeline 2853e82cc05b43e058e0d2458deb89a0 https://www.encodeproject.org/files/ENCFF976DPO/@@download/ENCFF976DPO.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF247QFC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF976DPO 534927 ENCODE Processing Pipeline 934f49ed770fb6a7dae48c11cf0d69a1 https://www.encodeproject.org/files/ENCFF247QFC/@@download/ENCFF247QFC.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF286ECX fastq reads ENCSR321TTR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1049505365 Richard Myers, HAIB 404d03299056f0228f7eb37fc76b5136 SRA:SRR5111436 https://www.encodeproject.org/files/ENCFF286ECX/@@download/ENCFF286ECX.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF312MBC bam unfiltered alignments ENCSR321TTR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF286ECX 1158920133 ENCODE Processing Pipeline fed4d0a18a4eba3b5dd68c13f154dadb https://www.encodeproject.org/files/ENCFF312MBC/@@download/ENCFF312MBC.bam mm10 released insufficient read depth for broad peaks control ENCFF363JGX bam alignments ENCSR321TTR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF286ECX 835706563 ENCODE Processing Pipeline b67da9b8b3316b492750e5e7372d1e80 https://www.encodeproject.org/files/ENCFF363JGX/@@download/ENCFF363JGX.bam mm10 released insufficient read depth for broad peaks control ENCFF982KIO fastq reads ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2784089096 Bing Ren, UCSD 72af83e695f0e05efbed645c6924fc78 SRA:SRR3652148 https://www.encodeproject.org/files/ENCFF982KIO/@@download/ENCFF982KIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF192DLE fastq reads ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2225548173 Bing Ren, UCSD 7248af0650fb27f0599c02820857b769 SRA:SRR3652145 https://www.encodeproject.org/files/ENCFF192DLE/@@download/ENCFF192DLE.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF417FVF fastq reads ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 1001649970 Bing Ren, UCSD 5a267e0c956c9375328fe7087bfdd739 SRA:SRR3652146 https://www.encodeproject.org/files/ENCFF417FVF/@@download/ENCFF417FVF.fastq.gz Illumina HiSeq 2500 /files/ENCFF292YPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF036EET fastq reads ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1421267718 Bing Ren, UCSD 5b30ee7fb01a76deadf1a671c3991fd0 SRA:SRR3652149 https://www.encodeproject.org/files/ENCFF036EET/@@download/ENCFF036EET.fastq.gz Illumina HiSeq 2500 /files/ENCFF710GYU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF154TUX fastq reads ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1443959662 Bing Ren, UCSD 860d09ba135742e82cd3b00d296ad9e1 SRA:SRR3652147 https://www.encodeproject.org/files/ENCFF154TUX/@@download/ENCFF154TUX.fastq.gz Illumina HiSeq 2500 /files/ENCFF292YPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF125WGF bam alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF154TUX, ENCFF192DLE, ENCFF417FVF, ENCFF806TVZ 3303148143 ENCODE Processing Pipeline 54aa586a2bb1e5101a7e28c0070ba520 https://www.encodeproject.org/files/ENCFF125WGF/@@download/ENCFF125WGF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF785HTE bam alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF036EET, ENCFF806TVZ, ENCFF982KIO 3008551413 ENCODE Processing Pipeline 12d969d4ccdeb0e23bad661553c35291 https://www.encodeproject.org/files/ENCFF785HTE/@@download/ENCFF785HTE.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF403WDG bed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF476GUX, ENCFF592WTG, ENCFF785HTE 2907837 ENCODE Processing Pipeline 7875bdf26989a6fba29ba9b2e8021a2d https://www.encodeproject.org/files/ENCFF403WDG/@@download/ENCFF403WDG.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF769MXI bigBed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF861WII 5807164 ENCODE Processing Pipeline 0de46aeb94b183b17703a3cd7b06d0a9 https://www.encodeproject.org/files/ENCFF769MXI/@@download/ENCFF769MXI.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF172FTU bigBed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF403WDG 6404461 ENCODE Processing Pipeline 381f06f3892f9a1bc357b821a3cb545f https://www.encodeproject.org/files/ENCFF172FTU/@@download/ENCFF172FTU.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF075FUH bed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125WGF, ENCFF476GUX, ENCFF592WTG 2981369 ENCODE Processing Pipeline 039d4625e779d54c24f2f288b7205235 https://www.encodeproject.org/files/ENCFF075FUH/@@download/ENCFF075FUH.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF861WII bed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125WGF, ENCFF476GUX, ENCFF592WTG, ENCFF785HTE 2696930 ENCODE Processing Pipeline 40e296cb1c27239b31fd5a8437c176cf https://www.encodeproject.org/files/ENCFF861WII/@@download/ENCFF861WII.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF381PVW bigBed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF075FUH 6413406 ENCODE Processing Pipeline 26356ebfb68c262e254c5a700e81f9dd https://www.encodeproject.org/files/ENCFF381PVW/@@download/ENCFF381PVW.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF641IKZ bigWig signal p-value ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF476GUX, ENCFF592WTG, ENCFF785HTE 945207982 ENCODE Processing Pipeline 21c90bba32a3ef7c6b22f737120c15f9 https://www.encodeproject.org/files/ENCFF641IKZ/@@download/ENCFF641IKZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF684YLV bigWig signal p-value ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125WGF, ENCFF476GUX, ENCFF592WTG 834278972 ENCODE Processing Pipeline ec7d7cce3d36299a2ebebeef02f08cf2 https://www.encodeproject.org/files/ENCFF684YLV/@@download/ENCFF684YLV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF851DEZ bigWig signal p-value ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125WGF, ENCFF476GUX, ENCFF592WTG, ENCFF785HTE 1335065235 ENCODE Processing Pipeline 2765bff18d5187753d8a2cf2bdf319e8 https://www.encodeproject.org/files/ENCFF851DEZ/@@download/ENCFF851DEZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF895EWP bigWig fold change over control ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125WGF, ENCFF476GUX, ENCFF592WTG 1146863157 ENCODE Processing Pipeline 25cbc848213cb63341f1bfbdb6e2a41d https://www.encodeproject.org/files/ENCFF895EWP/@@download/ENCFF895EWP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF836VQM bigWig fold change over control ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF476GUX, ENCFF592WTG, ENCFF785HTE 1084777301 ENCODE Processing Pipeline d8dc17cb3f4e481e5018068904be7a07 https://www.encodeproject.org/files/ENCFF836VQM/@@download/ENCFF836VQM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF415KGC bigBed narrowPeak replicated peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF671DVU 4656878 ENCODE Processing Pipeline a6a839d80a7b086d54973d369ba3f456 https://www.encodeproject.org/files/ENCFF415KGC/@@download/ENCFF415KGC.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF614XBE bigWig fold change over control ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125WGF, ENCFF476GUX, ENCFF592WTG, ENCFF785HTE 1623987330 ENCODE Processing Pipeline 6ecd3e66df0e8601c58f76fd9b110425 https://www.encodeproject.org/files/ENCFF614XBE/@@download/ENCFF614XBE.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF671DVU bed narrowPeak replicated peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF075FUH, ENCFF403WDG, ENCFF861WII 2766770 ENCODE Processing Pipeline 138d7a9a39a3358b6c0baa3f418fb838 https://www.encodeproject.org/files/ENCFF671DVU/@@download/ENCFF671DVU.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF752WLX bam unfiltered alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF154TUX, ENCFF192DLE, ENCFF417FVF 5476043779 ENCODE Processing Pipeline 70b8a301624e5b1fdf45ed211b71f4f6 https://www.encodeproject.org/files/ENCFF752WLX/@@download/ENCFF752WLX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF665HNC bam alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF154TUX, ENCFF192DLE, ENCFF417FVF 3302575145 ENCODE Processing Pipeline 067e697924161c0152b0179243f5ad20 https://www.encodeproject.org/files/ENCFF665HNC/@@download/ENCFF665HNC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF866ANA bam unfiltered alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF036EET, ENCFF982KIO 4966689712 ENCODE Processing Pipeline 865e1ce2818d9d5c74290d47ec68f2cb https://www.encodeproject.org/files/ENCFF866ANA/@@download/ENCFF866ANA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF998LUA bam alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF036EET, ENCFF982KIO 3007923393 ENCODE Processing Pipeline 5c708472bca01525eddb386af8277ec1 https://www.encodeproject.org/files/ENCFF998LUA/@@download/ENCFF998LUA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF541MEC bed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF285XPR, ENCFF627RIT, ENCFF998LUA 2863414 ENCODE Processing Pipeline c9cf07752d50ee6250e2d9f5674c7cc3 https://www.encodeproject.org/files/ENCFF541MEC/@@download/ENCFF541MEC.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF031PCZ bed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF665HNC 2673459 ENCODE Processing Pipeline c53979b9d844cc7d47a5a7b097698402 https://www.encodeproject.org/files/ENCFF031PCZ/@@download/ENCFF031PCZ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF394GXE bed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF627RIT, ENCFF665HNC, ENCFF998LUA 2818671 ENCODE Processing Pipeline 81e11c148b6792cb6e9cc46118fb03f2 https://www.encodeproject.org/files/ENCFF394GXE/@@download/ENCFF394GXE.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF907DUU bigBed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF541MEC 6271968 ENCODE Processing Pipeline 7f5d402dd090297214b7e70579c2c9b7 https://www.encodeproject.org/files/ENCFF907DUU/@@download/ENCFF907DUU.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF379ENX bigBed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031PCZ 5717588 ENCODE Processing Pipeline 1d8dfb50ee55302e90f030d47a93ef71 https://www.encodeproject.org/files/ENCFF379ENX/@@download/ENCFF379ENX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF295XGW bigBed narrowPeak peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF394GXE 6048458 ENCODE Processing Pipeline 1f0b5990945a72bcb2811637a6d1c71c https://www.encodeproject.org/files/ENCFF295XGW/@@download/ENCFF295XGW.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF676KNN bigWig signal p-value ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF285XPR, ENCFF627RIT, ENCFF998LUA 925089276 ENCODE Processing Pipeline 90b2efe80a367106c4e5532c04ad6b67 https://www.encodeproject.org/files/ENCFF676KNN/@@download/ENCFF676KNN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF833ATY bigWig signal p-value ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF665HNC 840725188 ENCODE Processing Pipeline d4cedcf74847430682aa3e4e77ee295b https://www.encodeproject.org/files/ENCFF833ATY/@@download/ENCFF833ATY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF916WRC bigWig signal p-value ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF627RIT, ENCFF665HNC, ENCFF998LUA 1467979248 ENCODE Processing Pipeline 20bd2cbc96f93248ee8a78cd36e40517 https://www.encodeproject.org/files/ENCFF916WRC/@@download/ENCFF916WRC.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF423TZW bigWig fold change over control ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF285XPR, ENCFF627RIT, ENCFF998LUA 1094243761 ENCODE Processing Pipeline 1eb17147c9b040bff94b9149e16512d0 https://www.encodeproject.org/files/ENCFF423TZW/@@download/ENCFF423TZW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF822YXV bigWig fold change over control ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF665HNC 950198413 ENCODE Processing Pipeline 7a09eebb7a45e354232c3283895e42b0 https://www.encodeproject.org/files/ENCFF822YXV/@@download/ENCFF822YXV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF952ZFO bigWig fold change over control ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF627RIT, ENCFF665HNC, ENCFF998LUA 1627165506 ENCODE Processing Pipeline 784e28ff8350576669da33e1fb5e6259 https://www.encodeproject.org/files/ENCFF952ZFO/@@download/ENCFF952ZFO.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF013FAX bed narrowPeak replicated peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031PCZ, ENCFF394GXE, ENCFF541MEC 2539092 ENCODE Processing Pipeline 6ec035c7a427ee01f3602bb590973092 https://www.encodeproject.org/files/ENCFF013FAX/@@download/ENCFF013FAX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF329ZJJ bigBed narrowPeak replicated peaks ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF013FAX 4245201 ENCODE Processing Pipeline de499be56a348b0ecc4ec1203d7f2d6b https://www.encodeproject.org/files/ENCFF329ZJJ/@@download/ENCFF329ZJJ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002ALK fastq reads ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1120519020 Bing Ren, UCSD 624a22c0045f395fb80c4d5d78851520 SRA:SRR3651978 https://www.encodeproject.org/files/ENCFF002ALK/@@download/ENCFF002ALK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQU/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002ALL fastq reads ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1249638034 Bing Ren, UCSD 64ee85c64d405d385a9cf7dd775d2f3d SRA:SRR3651977 https://www.encodeproject.org/files/ENCFF002ALL/@@download/ENCFF002ALL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQS/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF529JJG bam alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALL, ENCFF806TVZ 900423859 ENCODE Processing Pipeline f5d58248491309fe39ff9492cbc99fad https://www.encodeproject.org/files/ENCFF529JJG/@@download/ENCFF529JJG.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF136RCK bam alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALK, ENCFF806TVZ 763890811 ENCODE Processing Pipeline 296935ad777d847fb233a6e2bb81ab51 https://www.encodeproject.org/files/ENCFF136RCK/@@download/ENCFF136RCK.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF761ZYD bed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF136RCK, ENCFF529JJG, ENCFF720UVE, ENCFF977HMC 1112281 ENCODE Processing Pipeline 2a2329249e04a6502eb524f045164123 https://www.encodeproject.org/files/ENCFF761ZYD/@@download/ENCFF761ZYD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF949XVZ bed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF529JJG, ENCFF977HMC 1005678 ENCODE Processing Pipeline a7c1a015e499c5f1aaa2dad85fe2c759 https://www.encodeproject.org/files/ENCFF949XVZ/@@download/ENCFF949XVZ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF207AAM bigBed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF949XVZ 3153839 ENCODE Processing Pipeline c5d12e7a89aa9a984926336e8ca7bc10 https://www.encodeproject.org/files/ENCFF207AAM/@@download/ENCFF207AAM.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF299EDO bed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF136RCK, ENCFF720UVE 861698 ENCODE Processing Pipeline bc0678ab9cb28534bf3b7105283bd813 https://www.encodeproject.org/files/ENCFF299EDO/@@download/ENCFF299EDO.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF969XES bigBed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF299EDO 2759954 ENCODE Processing Pipeline d1bef1388f0655e7be01c594641d5c71 https://www.encodeproject.org/files/ENCFF969XES/@@download/ENCFF969XES.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF592FLL bigBed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF761ZYD 3387630 ENCODE Processing Pipeline ec73c044f87800017de39626a4d270f4 https://www.encodeproject.org/files/ENCFF592FLL/@@download/ENCFF592FLL.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF476BFC bigWig signal p-value ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF529JJG, ENCFF977HMC 474256738 ENCODE Processing Pipeline 921c3e8644be1587317ba93071f8f51a https://www.encodeproject.org/files/ENCFF476BFC/@@download/ENCFF476BFC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF935PEO bigWig signal p-value ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF136RCK, ENCFF720UVE 336622777 ENCODE Processing Pipeline 230e5e856b491e9fed8d3c38d6ff2da5 https://www.encodeproject.org/files/ENCFF935PEO/@@download/ENCFF935PEO.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF263PVY bigWig signal p-value ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF136RCK, ENCFF529JJG, ENCFF720UVE, ENCFF977HMC 784357059 ENCODE Processing Pipeline 39d3102a5cc74c0406786e7923e3bd93 https://www.encodeproject.org/files/ENCFF263PVY/@@download/ENCFF263PVY.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF248INL bigWig fold change over control ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF529JJG, ENCFF977HMC 395574863 ENCODE Processing Pipeline ee85b1ab32488c362e3fc76608b9db3a https://www.encodeproject.org/files/ENCFF248INL/@@download/ENCFF248INL.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF062NVK bigWig fold change over control ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF136RCK, ENCFF720UVE 333302457 ENCODE Processing Pipeline 6871781a41255c2a1131a1e7a19104d3 https://www.encodeproject.org/files/ENCFF062NVK/@@download/ENCFF062NVK.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF369QXV bigWig fold change over control ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF136RCK, ENCFF529JJG, ENCFF720UVE, ENCFF977HMC 738416017 ENCODE Processing Pipeline 5343a1f3e11bd0cb92102617a89b3184 https://www.encodeproject.org/files/ENCFF369QXV/@@download/ENCFF369QXV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF251KRF bigBed narrowPeak replicated peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF746JCH 2571138 ENCODE Processing Pipeline ac02303d0da3e121bf417431098e5306 https://www.encodeproject.org/files/ENCFF251KRF/@@download/ENCFF251KRF.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF746JCH bed narrowPeak replicated peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF299EDO, ENCFF761ZYD, ENCFF949XVZ 1154027 ENCODE Processing Pipeline ecb98ad323f2495dd7a8010b8c70e96c https://www.encodeproject.org/files/ENCFF746JCH/@@download/ENCFF746JCH.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF429QFY bam unfiltered alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALK, ENCFF018NEO 1248109026 ENCODE Processing Pipeline 1f2c31e6d44b9d200b05e9e81a627ed7 https://www.encodeproject.org/files/ENCFF429QFY/@@download/ENCFF429QFY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF963JEX bam unfiltered alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALL, ENCFF018NEO 1360124830 ENCODE Processing Pipeline 46eb11c777921aaba417547cf648c828 https://www.encodeproject.org/files/ENCFF963JEX/@@download/ENCFF963JEX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF293XAV bam alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALK, ENCFF018NEO 763752136 ENCODE Processing Pipeline a8eb625a6b3b44b584ec3a7b344dfb4b https://www.encodeproject.org/files/ENCFF293XAV/@@download/ENCFF293XAV.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF212UXF bam alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALL, ENCFF018NEO 900353186 ENCODE Processing Pipeline b8fe35a1a7ecaec33bbb864f2e7ab961 https://www.encodeproject.org/files/ENCFF212UXF/@@download/ENCFF212UXF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF801DLH bed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF212UXF, ENCFF322DCQ 970780 ENCODE Processing Pipeline 8f136f9a73312e4ba300263ca8218884 https://www.encodeproject.org/files/ENCFF801DLH/@@download/ENCFF801DLH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF093MPR bed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF293XAV, ENCFF979XVT 867703 ENCODE Processing Pipeline ac0ed06634f5ddabf4587f02fa1ab743 https://www.encodeproject.org/files/ENCFF093MPR/@@download/ENCFF093MPR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF320SQR bed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF212UXF, ENCFF293XAV, ENCFF322DCQ, ENCFF979XVT 1103289 ENCODE Processing Pipeline 3e2771351e2a84583fbaca52c747988c https://www.encodeproject.org/files/ENCFF320SQR/@@download/ENCFF320SQR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF150RHM bigBed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF801DLH 3054557 ENCODE Processing Pipeline db13ca7bdbdc64d846be20e20ff895c7 https://www.encodeproject.org/files/ENCFF150RHM/@@download/ENCFF150RHM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF304QGR bigBed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF093MPR 2786141 ENCODE Processing Pipeline 2bee7bd588165ba3b70a1ad7d547bea3 https://www.encodeproject.org/files/ENCFF304QGR/@@download/ENCFF304QGR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF337NXI bigBed narrowPeak peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF320SQR 3351435 ENCODE Processing Pipeline a8cd22f024ec5af8c05dc5a3c6a4b19c https://www.encodeproject.org/files/ENCFF337NXI/@@download/ENCFF337NXI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF360OJP bigWig signal p-value ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF212UXF, ENCFF322DCQ 437288197 ENCODE Processing Pipeline ab03ef93d12b2c3977e472583eef1b7d https://www.encodeproject.org/files/ENCFF360OJP/@@download/ENCFF360OJP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF037ZGF bigWig signal p-value ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF293XAV, ENCFF979XVT 360462401 ENCODE Processing Pipeline be95d93490cf1f8a38968b89dcebf430 https://www.encodeproject.org/files/ENCFF037ZGF/@@download/ENCFF037ZGF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF795ESQ bigWig signal p-value ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF212UXF, ENCFF293XAV, ENCFF322DCQ, ENCFF979XVT 732797042 ENCODE Processing Pipeline b578ba5ec70ce94de3050bd5d92f9628 https://www.encodeproject.org/files/ENCFF795ESQ/@@download/ENCFF795ESQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF429OXG bigWig fold change over control ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF212UXF, ENCFF322DCQ 401187323 ENCODE Processing Pipeline 9ed274046e7df09e03a31e00d4765c07 https://www.encodeproject.org/files/ENCFF429OXG/@@download/ENCFF429OXG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF276GFB bigWig fold change over control ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF293XAV, ENCFF979XVT 362694243 ENCODE Processing Pipeline 515b07c006178e90805f63a6af2cf37d https://www.encodeproject.org/files/ENCFF276GFB/@@download/ENCFF276GFB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF099OBO bigWig fold change over control ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF212UXF, ENCFF293XAV, ENCFF322DCQ, ENCFF979XVT 749307839 ENCODE Processing Pipeline 34beb40e1e711592b22a5089bb34dcd2 https://www.encodeproject.org/files/ENCFF099OBO/@@download/ENCFF099OBO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF149ASB bed narrowPeak replicated peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF093MPR, ENCFF320SQR, ENCFF801DLH 1135224 ENCODE Processing Pipeline 9d1bffad2e5a6c4ffa6141b1da23ee91 https://www.encodeproject.org/files/ENCFF149ASB/@@download/ENCFF149ASB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF593OWP bigBed narrowPeak replicated peaks ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF149ASB 2524354 ENCODE Processing Pipeline 834844940dac36a271ac550a421a3b6b https://www.encodeproject.org/files/ENCFF593OWP/@@download/ENCFF593OWP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001ZTA fastq reads ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1042150621 Bing Ren, UCSD 54fdca439da04015af0a83581c2a08de SRA:SRR3652030 https://www.encodeproject.org/files/ENCFF001ZTA/@@download/ENCFF001ZTA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001ZTB fastq reads ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1261731443 Bing Ren, UCSD 5c4259baf408ff106a6123cdf0f4caed SRA:SRR3652031 https://www.encodeproject.org/files/ENCFF001ZTB/@@download/ENCFF001ZTB.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUI/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF481APV bam alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTA, ENCFF806TVZ 749156761 ENCODE Processing Pipeline b1bbe7d2afaa07c90bcce6dad0d1b45e https://www.encodeproject.org/files/ENCFF481APV/@@download/ENCFF481APV.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF075ICI bam alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTB, ENCFF806TVZ 743919555 ENCODE Processing Pipeline 48deb8e2ef332d269518de15c5c07a17 https://www.encodeproject.org/files/ENCFF075ICI/@@download/ENCFF075ICI.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF087JNR bed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF075ICI, ENCFF265KAG, ENCFF851KTA 902604 ENCODE Processing Pipeline a7c826cb47901bee46ee98f6a121923f https://www.encodeproject.org/files/ENCFF087JNR/@@download/ENCFF087JNR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF229ADH bigBed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF018ONW 1979861 ENCODE Processing Pipeline 11622bfa4f3dc19dfcf5afaeb599a2c5 https://www.encodeproject.org/files/ENCFF229ADH/@@download/ENCFF229ADH.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF238ANC bigWig signal p-value ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF481APV, ENCFF851KTA 330108805 ENCODE Processing Pipeline 4c40ab577210f6798b17f7e852234b11 https://www.encodeproject.org/files/ENCFF238ANC/@@download/ENCFF238ANC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF550CIQ bed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF481APV, ENCFF851KTA 807380 ENCODE Processing Pipeline ddb757df49eeafb2ef454add7d7a184d https://www.encodeproject.org/files/ENCFF550CIQ/@@download/ENCFF550CIQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF150HTL bigBed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF550CIQ 2536953 ENCODE Processing Pipeline 0416043687d8f5bc5937f77da768a85e https://www.encodeproject.org/files/ENCFF150HTL/@@download/ENCFF150HTL.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF242ZQM bigBed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF087JNR 2330894 ENCODE Processing Pipeline bf8083bb057b06c7c8ecb7a65f70323d https://www.encodeproject.org/files/ENCFF242ZQM/@@download/ENCFF242ZQM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF197BTQ bigWig signal p-value ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF075ICI, ENCFF265KAG, ENCFF851KTA 378150555 ENCODE Processing Pipeline f9529f7ad24dd2ca6b202835b3361d3d https://www.encodeproject.org/files/ENCFF197BTQ/@@download/ENCFF197BTQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF018ONW bed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF075ICI, ENCFF265KAG, ENCFF481APV, ENCFF851KTA 614770 ENCODE Processing Pipeline 1e91d2510708879fafcb7c3bbaf20a72 https://www.encodeproject.org/files/ENCFF018ONW/@@download/ENCFF018ONW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF935THL bigWig signal p-value ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF075ICI, ENCFF265KAG, ENCFF481APV, ENCFF851KTA 428630356 ENCODE Processing Pipeline ea90fdf27ad49f5737fe1bb12b32860e https://www.encodeproject.org/files/ENCFF935THL/@@download/ENCFF935THL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF642BHW bigWig fold change over control ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF481APV, ENCFF851KTA 313420607 ENCODE Processing Pipeline 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Processing Pipeline a8b293cb1ba425280401cfe10411e2ea https://www.encodeproject.org/files/ENCFF521AUB/@@download/ENCFF521AUB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF047UOL bed narrowPeak replicated peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF018ONW, ENCFF087JNR, ENCFF550CIQ 764200 ENCODE Processing Pipeline d1e93bbe9a2447f4c451cbe2677fe643 https://www.encodeproject.org/files/ENCFF047UOL/@@download/ENCFF047UOL.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF891QYR bigBed narrowPeak replicated peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047UOL 1859482 ENCODE Processing Pipeline e09861f242376d5457a539681da0a7c1 https://www.encodeproject.org/files/ENCFF891QYR/@@download/ENCFF891QYR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF343LQJ bam unfiltered alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTA, ENCFF018NEO 1286820867 ENCODE Processing Pipeline d61b36cac1cc6e3c831834ee3215b5bd https://www.encodeproject.org/files/ENCFF343LQJ/@@download/ENCFF343LQJ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF444CRY bam unfiltered alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTB, ENCFF018NEO 1527569418 ENCODE Processing Pipeline d19f30290b28e10354091a5821b78468 https://www.encodeproject.org/files/ENCFF444CRY/@@download/ENCFF444CRY.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF164TXZ bam alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTA, ENCFF018NEO 748968488 ENCODE Processing Pipeline f0eeea9537818452a45e0f64fa19f49b https://www.encodeproject.org/files/ENCFF164TXZ/@@download/ENCFF164TXZ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF258NCT bam alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTB, ENCFF018NEO 743684567 ENCODE Processing Pipeline 5bbe2ae8af6a186e0cdd86d31ed7419e https://www.encodeproject.org/files/ENCFF258NCT/@@download/ENCFF258NCT.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF815LKZ bed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF164TXZ, ENCFF377IXU, ENCFF512NUW 812694 ENCODE Processing Pipeline f0b9eeff6d9ab0e58947fd1dd66c26b7 https://www.encodeproject.org/files/ENCFF815LKZ/@@download/ENCFF815LKZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF297ZET bed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF258NCT, ENCFF512NUW 610819 ENCODE Processing Pipeline 1a13d0f2fb3bb3d657b8531787f47f30 https://www.encodeproject.org/files/ENCFF297ZET/@@download/ENCFF297ZET.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF177LPO bed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF164TXZ, ENCFF258NCT, ENCFF377IXU, ENCFF512NUW 615757 ENCODE Processing Pipeline 5c3834e8c67b13952e5e1cf64b5dc12f https://www.encodeproject.org/files/ENCFF177LPO/@@download/ENCFF177LPO.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF240NCE bigBed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF815LKZ 2560143 ENCODE Processing Pipeline e72ea39de05e3907cbc7270442e12154 https://www.encodeproject.org/files/ENCFF240NCE/@@download/ENCFF240NCE.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF991CHH bigBed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297ZET 1958281 ENCODE Processing Pipeline 5a45d1219bb985ef16bf557aeb11bb17 https://www.encodeproject.org/files/ENCFF991CHH/@@download/ENCFF991CHH.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF575NXB bigBed narrowPeak peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF177LPO 1983077 ENCODE Processing Pipeline 55c601a4a6a1526f3b3f7a48aa996af2 https://www.encodeproject.org/files/ENCFF575NXB/@@download/ENCFF575NXB.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF638RYW bigWig signal p-value ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF164TXZ, ENCFF377IXU, ENCFF512NUW 413115487 ENCODE Processing Pipeline 2757635fdc97764db3c50cda03b9ec68 https://www.encodeproject.org/files/ENCFF638RYW/@@download/ENCFF638RYW.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF034EYT bigWig signal p-value ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF258NCT, ENCFF512NUW 230692860 ENCODE Processing Pipeline 3c1877c7fddd8cf6c3bb24dcfe363428 https://www.encodeproject.org/files/ENCFF034EYT/@@download/ENCFF034EYT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF745MKD bigWig signal p-value ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF164TXZ, ENCFF258NCT, ENCFF377IXU, ENCFF512NUW 428634736 ENCODE Processing Pipeline 7e42066f5bd82269a88215e8dc4d5baa https://www.encodeproject.org/files/ENCFF745MKD/@@download/ENCFF745MKD.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF486FJZ bigWig fold change over control ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF164TXZ, ENCFF377IXU, ENCFF512NUW 314576583 ENCODE Processing Pipeline 15f9e88ba8834e4be945b222751b5cc9 https://www.encodeproject.org/files/ENCFF486FJZ/@@download/ENCFF486FJZ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF501GDR bigWig fold change over control ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF258NCT, ENCFF512NUW 252285468 ENCODE Processing Pipeline 11b9b197059e2a1a1765039edfc36aaf https://www.encodeproject.org/files/ENCFF501GDR/@@download/ENCFF501GDR.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF623HDU bigWig fold change over control ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF164TXZ, ENCFF258NCT, ENCFF377IXU, ENCFF512NUW 535082536 ENCODE Processing Pipeline 78f563126d7d6a4bad42bb2e06a63bcf https://www.encodeproject.org/files/ENCFF623HDU/@@download/ENCFF623HDU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF133ICS bed narrowPeak replicated peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF177LPO, ENCFF297ZET, ENCFF815LKZ 749811 ENCODE Processing Pipeline da966b184f0d5ac9195f2c3d2d60eaba https://www.encodeproject.org/files/ENCFF133ICS/@@download/ENCFF133ICS.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF766CQC bigBed narrowPeak replicated peaks ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133ICS 1831150 ENCODE Processing Pipeline ad3f6e8836f5d1cfb1d7c759b05a7d9a https://www.encodeproject.org/files/ENCFF766CQC/@@download/ENCFF766CQC.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF178AVU fastq reads ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1385517286 Bing Ren, UCSD 1eb5b597a6d5e92cd3b0578d961d4918 SRA:SRR3651322 https://www.encodeproject.org/files/ENCFF178AVU/@@download/ENCFF178AVU.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released mild to moderate bottlenecking ENCFF865TBT fastq reads ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1365885029 Bing Ren, UCSD def72f16ddcd0a9496625027a9cfba4b SRA:SRR3651323 https://www.encodeproject.org/files/ENCFF865TBT/@@download/ENCFF865TBT.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released mild to moderate bottlenecking ENCFF033ORZ bam alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF178AVU, ENCFF806TVZ 1227864205 ENCODE Processing Pipeline 27ed8310c2bf808e4f90d87b5f8aaeed https://www.encodeproject.org/files/ENCFF033ORZ/@@download/ENCFF033ORZ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF066JHT bam alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF865TBT 1215895248 ENCODE Processing Pipeline 938893b720e15d4181fdd3eee4b598ff https://www.encodeproject.org/files/ENCFF066JHT/@@download/ENCFF066JHT.bam mm10-minimal archived mild to moderate bottlenecking ENCFF412TAF bed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF066JHT, ENCFF405EMM 979859 ENCODE Processing Pipeline 14d8200ab2e03df6cc55b52a58189512 https://www.encodeproject.org/files/ENCFF412TAF/@@download/ENCFF412TAF.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF688COF bigBed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF795PIG 2405372 ENCODE Processing Pipeline bb93a997a6c0115b426ab3e79d968be8 https://www.encodeproject.org/files/ENCFF688COF/@@download/ENCFF688COF.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF564DXQ bed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF033ORZ, ENCFF066JHT, ENCFF405EMM, ENCFF986JLW 1275296 ENCODE Processing Pipeline 7931ca9dddb981a8ede4f959eb1913ff https://www.encodeproject.org/files/ENCFF564DXQ/@@download/ENCFF564DXQ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF162KUF bigBed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF412TAF 2433624 ENCODE Processing Pipeline 2af465d383ef02d07bce3e6be03c078f https://www.encodeproject.org/files/ENCFF162KUF/@@download/ENCFF162KUF.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF795PIG bed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF033ORZ, ENCFF986JLW 964413 ENCODE Processing Pipeline bc12234e32bc4a3ec37112ffe44d2d34 https://www.encodeproject.org/files/ENCFF795PIG/@@download/ENCFF795PIG.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF611GWP bigBed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF564DXQ 2994835 ENCODE Processing Pipeline 6b93231f0f140d8610f616015c5c9393 https://www.encodeproject.org/files/ENCFF611GWP/@@download/ENCFF611GWP.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF354RRL bigWig signal p-value ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF033ORZ, ENCFF986JLW 562708015 ENCODE Processing Pipeline 7ca92c2485348acd87cbef36a93b7595 https://www.encodeproject.org/files/ENCFF354RRL/@@download/ENCFF354RRL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF969MDD bigWig signal p-value ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF066JHT, ENCFF405EMM 536216864 ENCODE Processing Pipeline bcf9517f956d41328dbcb9a9ce1d9834 https://www.encodeproject.org/files/ENCFF969MDD/@@download/ENCFF969MDD.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF071VAQ bigWig signal p-value ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF033ORZ, ENCFF066JHT, ENCFF405EMM, ENCFF986JLW 878850061 ENCODE Processing Pipeline 7e26ac59d80c86b479a9bca8ef257da9 https://www.encodeproject.org/files/ENCFF071VAQ/@@download/ENCFF071VAQ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF143VOD bigWig fold change over control ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF033ORZ, ENCFF986JLW 579749727 ENCODE Processing Pipeline cc7344d20ae4b68928a5acf09f9692b8 https://www.encodeproject.org/files/ENCFF143VOD/@@download/ENCFF143VOD.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF857APO bigWig fold change over control ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF066JHT, ENCFF405EMM 614365367 ENCODE Processing Pipeline 38e7dbb0821b1644c7a381958873f57d https://www.encodeproject.org/files/ENCFF857APO/@@download/ENCFF857APO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF285XAB bed narrowPeak replicated peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF412TAF, ENCFF564DXQ, ENCFF795PIG 686032 ENCODE Processing Pipeline 9f2e18602caf65dfcbb3d81087995140 https://www.encodeproject.org/files/ENCFF285XAB/@@download/ENCFF285XAB.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF322HVM bigBed narrowPeak replicated peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF285XAB 1744885 ENCODE Processing Pipeline 3e7fad32418d2bb56619bfe6daad0ebc https://www.encodeproject.org/files/ENCFF322HVM/@@download/ENCFF322HVM.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF215NTJ bigWig fold change over control ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF033ORZ, ENCFF066JHT, ENCFF405EMM, ENCFF986JLW 1174659803 ENCODE Processing Pipeline 4e4e1e56abe1de62b88e354c52a86f19 https://www.encodeproject.org/files/ENCFF215NTJ/@@download/ENCFF215NTJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF167ZSL bam unfiltered alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF178AVU 1831479602 ENCODE Processing Pipeline 229eaef9b29fef4dfa2def291be86328 https://www.encodeproject.org/files/ENCFF167ZSL/@@download/ENCFF167ZSL.bam mm10 released mild to moderate bottlenecking ENCFF487OQM bam unfiltered alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF865TBT 1803075500 ENCODE Processing Pipeline 6087b01972ce703bb0e557cc468a5c80 https://www.encodeproject.org/files/ENCFF487OQM/@@download/ENCFF487OQM.bam mm10 released mild to moderate bottlenecking ENCFF471UAH bam alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF865TBT 1215614714 ENCODE Processing Pipeline 990e2acf70e6e59d362bad6f87d7a149 https://www.encodeproject.org/files/ENCFF471UAH/@@download/ENCFF471UAH.bam mm10 released mild to moderate bottlenecking ENCFF823HVL bam alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF178AVU 1227591265 ENCODE Processing Pipeline 2fdb13284e8c423a2b0f062396337f1f https://www.encodeproject.org/files/ENCFF823HVL/@@download/ENCFF823HVL.bam mm10 released mild to moderate bottlenecking ENCFF251XUH bed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF823HVL, ENCFF970FNZ 964442 ENCODE Processing Pipeline 03e30013bc28042619a70838b6860614 https://www.encodeproject.org/files/ENCFF251XUH/@@download/ENCFF251XUH.bed.gz mm10 released mild to moderate bottlenecking ENCFF879WUX bed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF471UAH, ENCFF614XRG, ENCFF823HVL, ENCFF970FNZ 1276120 ENCODE Processing Pipeline 0e807b70eed101398cba15dd6c903b66 https://www.encodeproject.org/files/ENCFF879WUX/@@download/ENCFF879WUX.bed.gz mm10 released mild to moderate bottlenecking ENCFF892ZJY bed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF471UAH, ENCFF614XRG 1005092 ENCODE Processing Pipeline b556b6d92cfbfe3c281bed869911fffb https://www.encodeproject.org/files/ENCFF892ZJY/@@download/ENCFF892ZJY.bed.gz mm10 released mild to moderate bottlenecking ENCFF052VJZ bigBed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF251XUH 2407083 ENCODE Processing Pipeline 3ec5c431ebcbe889d22854ec0a5d415e https://www.encodeproject.org/files/ENCFF052VJZ/@@download/ENCFF052VJZ.bigBed mm10 released mild to moderate bottlenecking ENCFF773AOH bigBed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF879WUX 2997065 ENCODE Processing Pipeline f020b6d15125ca13cdfdc215a453a5eb https://www.encodeproject.org/files/ENCFF773AOH/@@download/ENCFF773AOH.bigBed mm10 released mild to moderate bottlenecking ENCFF104VDH bigBed narrowPeak peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF892ZJY 2486633 ENCODE Processing Pipeline 00cd570c5838e3034c3b0b735720ef65 https://www.encodeproject.org/files/ENCFF104VDH/@@download/ENCFF104VDH.bigBed mm10 released mild to moderate bottlenecking ENCFF123UXY bigWig signal p-value ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF823HVL, ENCFF970FNZ 562662999 ENCODE Processing Pipeline 3a2ab87f129f531c546f9836dfe03fa7 https://www.encodeproject.org/files/ENCFF123UXY/@@download/ENCFF123UXY.bigWig mm10 released mild to moderate bottlenecking ENCFF720FRP bigWig signal p-value ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF471UAH, ENCFF614XRG 542617751 ENCODE Processing Pipeline 5a5a709795e0171c28b017eb9380d56a https://www.encodeproject.org/files/ENCFF720FRP/@@download/ENCFF720FRP.bigWig mm10 released mild to moderate bottlenecking ENCFF289ZSH bigWig signal p-value ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF471UAH, ENCFF614XRG, ENCFF823HVL, ENCFF970FNZ 1195684410 ENCODE Processing Pipeline ebae47ffaefa32f99fe193e5df01ee03 https://www.encodeproject.org/files/ENCFF289ZSH/@@download/ENCFF289ZSH.bigWig mm10 released mild to moderate bottlenecking ENCFF025WML bigWig fold change over control ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF823HVL, ENCFF970FNZ 579234295 ENCODE Processing Pipeline 66a7010ca04e550dede476510facbadb https://www.encodeproject.org/files/ENCFF025WML/@@download/ENCFF025WML.bigWig mm10 released mild to moderate bottlenecking ENCFF668SFA bigWig fold change over control ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF471UAH, ENCFF614XRG 622421193 ENCODE Processing Pipeline 198098cf36a46d065abb08cac2efec0a https://www.encodeproject.org/files/ENCFF668SFA/@@download/ENCFF668SFA.bigWig mm10 released mild to moderate bottlenecking ENCFF999AED bigWig fold change over control ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF471UAH, ENCFF614XRG, ENCFF823HVL, ENCFF970FNZ 1174582770 ENCODE Processing Pipeline b225e1a786f174c32ea3d60ee1cddbc9 https://www.encodeproject.org/files/ENCFF999AED/@@download/ENCFF999AED.bigWig mm10 released mild to moderate bottlenecking ENCFF839PUR bigBed narrowPeak replicated peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF946KMT 1745694 ENCODE Processing Pipeline 1814a01e74116cc2e71bce63185f108e https://www.encodeproject.org/files/ENCFF839PUR/@@download/ENCFF839PUR.bigBed mm10 released mild to moderate bottlenecking ENCFF946KMT bed narrowPeak replicated peaks ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF251XUH, ENCFF879WUX, ENCFF892ZJY 685853 ENCODE Processing Pipeline 6c91148593cf0ef9187a5244684f2774 https://www.encodeproject.org/files/ENCFF946KMT/@@download/ENCFF946KMT.bed.gz mm10 released mild to moderate bottlenecking ENCFF833WGT fastq reads ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1317425942 Bing Ren, UCSD e65314e9c45a3f631ebacbebcd8f5711 SRA:SRR3651402 https://www.encodeproject.org/files/ENCFF833WGT/@@download/ENCFF833WGT.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/, /files/ENCFF751HMJ/ released moderate library complexity, mild to moderate bottlenecking ENCFF959TYN fastq reads ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1549178673 Bing Ren, UCSD c9c0e0232110e6786922bcf08e45b140 SRA:SRR3651401 https://www.encodeproject.org/files/ENCFF959TYN/@@download/ENCFF959TYN.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/, /files/ENCFF884YRX/ released moderate library complexity, mild to moderate bottlenecking ENCFF877LTD bam alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF959TYN 1374363200 ENCODE Processing Pipeline df67fb30848dafca999e979fe8074873 https://www.encodeproject.org/files/ENCFF877LTD/@@download/ENCFF877LTD.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF721MHK bam alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF833WGT 1031640175 ENCODE Processing Pipeline 79df0c80b2be2fe45fd5c2290d00ac01 https://www.encodeproject.org/files/ENCFF721MHK/@@download/ENCFF721MHK.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF681VKM bed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF721MHK 1072930 ENCODE Processing Pipeline a5ece093deb71a0389f1f6aa7fe32866 https://www.encodeproject.org/files/ENCFF681VKM/@@download/ENCFF681VKM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF541TTB bed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF877LTD, ENCFF980WPU 1192935 ENCODE Processing Pipeline c6d0bb90c02c645b0960216caa7708c4 https://www.encodeproject.org/files/ENCFF541TTB/@@download/ENCFF541TTB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF831UTL bed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF721MHK, ENCFF877LTD, ENCFF980WPU 1281186 ENCODE Processing Pipeline 6e409f2eca4c248ce25f1bc19562138c https://www.encodeproject.org/files/ENCFF831UTL/@@download/ENCFF831UTL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF476HQH bigBed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF541TTB 2964611 ENCODE Processing Pipeline ff318846566652b45f31b779b749e1a2 https://www.encodeproject.org/files/ENCFF476HQH/@@download/ENCFF476HQH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF394VJV bigBed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF681VKM 2804969 ENCODE Processing Pipeline e04fcf4e4af7213cf9b37785e44d1fd0 https://www.encodeproject.org/files/ENCFF394VJV/@@download/ENCFF394VJV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF132OLP bigBed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF831UTL 3108612 ENCODE Processing Pipeline e1879bfe130fd7f4878f948546db2f5c https://www.encodeproject.org/files/ENCFF132OLP/@@download/ENCFF132OLP.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF012GCD bigWig signal p-value ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF721MHK 629700489 ENCODE Processing Pipeline ba675e1fd6c0e524fd9323205d7fafbb https://www.encodeproject.org/files/ENCFF012GCD/@@download/ENCFF012GCD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF867WTU bigWig signal p-value ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF877LTD, ENCFF980WPU 669745474 ENCODE Processing Pipeline 2783ad6dd3d2c9ad94965fbf5be6e2b1 https://www.encodeproject.org/files/ENCFF867WTU/@@download/ENCFF867WTU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF627HVD bigWig signal p-value ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF721MHK, ENCFF877LTD, ENCFF980WPU 1264210287 ENCODE Processing Pipeline 80901283cba703b966e2b0522e13ea58 https://www.encodeproject.org/files/ENCFF627HVD/@@download/ENCFF627HVD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF048UTD bigWig fold change over control ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF721MHK 603272432 ENCODE Processing Pipeline 553c0eade5aeaefa26741ad3127232d5 https://www.encodeproject.org/files/ENCFF048UTD/@@download/ENCFF048UTD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF655SXQ bigWig fold change over control ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF877LTD, ENCFF980WPU 685397842 ENCODE Processing Pipeline 64af3d1783812a3f6f26bb3c97f35467 https://www.encodeproject.org/files/ENCFF655SXQ/@@download/ENCFF655SXQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF974ZHM bed narrowPeak replicated peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF541TTB, ENCFF681VKM, ENCFF831UTL 708423 ENCODE Processing Pipeline 10863286f1cad791ca23d619de45d936 https://www.encodeproject.org/files/ENCFF974ZHM/@@download/ENCFF974ZHM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF685UHX bigBed narrowPeak replicated peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF974ZHM 1758078 ENCODE Processing Pipeline 249b3afc32d451b144b228d0af6f0485 https://www.encodeproject.org/files/ENCFF685UHX/@@download/ENCFF685UHX.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF894TGP bigWig fold change over control ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF721MHK, ENCFF877LTD, ENCFF980WPU 1244188599 ENCODE Processing Pipeline 4722e416a5caf4c303001acad7366620 https://www.encodeproject.org/files/ENCFF894TGP/@@download/ENCFF894TGP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF321KPC bam unfiltered alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF959TYN 2046965658 ENCODE Processing Pipeline 77fb801d827e513f23415d0b3cc9d903 https://www.encodeproject.org/files/ENCFF321KPC/@@download/ENCFF321KPC.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF344EXA bam unfiltered alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF833WGT 1702281674 ENCODE Processing Pipeline da9ce52d8139049ec9616f60cdf62a36 https://www.encodeproject.org/files/ENCFF344EXA/@@download/ENCFF344EXA.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF366PWS bam alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF959TYN 1374054914 ENCODE Processing Pipeline 8afbf95cf08fb86def782ee777a46ce4 https://www.encodeproject.org/files/ENCFF366PWS/@@download/ENCFF366PWS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF788WWW bam alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF833WGT 1031401780 ENCODE Processing Pipeline d333398b70aac33ed1af2d5c25d55146 https://www.encodeproject.org/files/ENCFF788WWW/@@download/ENCFF788WWW.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF075OUS bed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF788WWW 1073410 ENCODE Processing Pipeline dfb55ac17d7846fcb699feb8a345c980 https://www.encodeproject.org/files/ENCFF075OUS/@@download/ENCFF075OUS.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF303JVT bed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF366PWS, ENCFF399MAG, ENCFF609XDL, ENCFF788WWW 1241778 ENCODE Processing Pipeline 042c57c504a68922dec1ee4cc219a798 https://www.encodeproject.org/files/ENCFF303JVT/@@download/ENCFF303JVT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF821KUB bed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF366PWS, ENCFF609XDL 1193325 ENCODE Processing Pipeline 7fb91af50975df46b6a1cb4c5ba358c4 https://www.encodeproject.org/files/ENCFF821KUB/@@download/ENCFF821KUB.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF597RHQ bigBed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF075OUS 2808272 ENCODE Processing Pipeline f2578920fbba2a42d24f8ae260614b0f https://www.encodeproject.org/files/ENCFF597RHQ/@@download/ENCFF597RHQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF242IOW bigBed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF821KUB 2964837 ENCODE Processing Pipeline c3b56f93c891f50c49ff72fb7bb2f60e https://www.encodeproject.org/files/ENCFF242IOW/@@download/ENCFF242IOW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF678NOA bigBed narrowPeak peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF303JVT 3024548 ENCODE Processing Pipeline 2070690d11119a6b2c30f75507a5233e https://www.encodeproject.org/files/ENCFF678NOA/@@download/ENCFF678NOA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF486QCZ bigWig signal p-value ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF788WWW 605292824 ENCODE Processing Pipeline 7a7a393db4f9c767d51c5815d953ee81 https://www.encodeproject.org/files/ENCFF486QCZ/@@download/ENCFF486QCZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF889JYR bigWig signal p-value ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF366PWS, ENCFF609XDL 691887568 ENCODE Processing Pipeline c924178bbeec13e2b689324054503950 https://www.encodeproject.org/files/ENCFF889JYR/@@download/ENCFF889JYR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF391QLF bigWig signal p-value ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF366PWS, ENCFF399MAG, ENCFF609XDL, ENCFF788WWW 900285864 ENCODE Processing Pipeline 55f6e3f753af3b0990ac084881072ded https://www.encodeproject.org/files/ENCFF391QLF/@@download/ENCFF391QLF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF985TUO bigWig fold change over control ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF788WWW 604392671 ENCODE Processing Pipeline 876f9cdc950aef5743df95e816fa5110 https://www.encodeproject.org/files/ENCFF985TUO/@@download/ENCFF985TUO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF773KKV bigWig fold change over control ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF366PWS, ENCFF609XDL 684245007 ENCODE Processing Pipeline 4d244bd7b1aec591d466b38153bec240 https://www.encodeproject.org/files/ENCFF773KKV/@@download/ENCFF773KKV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF499LGL bigWig fold change over control ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF366PWS, ENCFF399MAG, ENCFF609XDL, ENCFF788WWW 1199458431 ENCODE Processing Pipeline 916f9c3c217f4e2215b3970af12f9b53 https://www.encodeproject.org/files/ENCFF499LGL/@@download/ENCFF499LGL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF852GMM bed narrowPeak replicated peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF075OUS, ENCFF303JVT, ENCFF821KUB 701192 ENCODE Processing Pipeline 3bf494ac4da651ff0bd20e633098521e https://www.encodeproject.org/files/ENCFF852GMM/@@download/ENCFF852GMM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF572YXY bigBed narrowPeak replicated peaks ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF852GMM 1757327 ENCODE Processing Pipeline 89b40d9f3ea951effbc942e21b4a37de https://www.encodeproject.org/files/ENCFF572YXY/@@download/ENCFF572YXY.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF276VDQ fastq reads ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2643636779 Bing Ren, UCSD bf4d2572d4c3d5d10fb0bfc4fe368c58 SRA:SRR3652931 https://www.encodeproject.org/files/ENCFF276VDQ/@@download/ENCFF276VDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF407YBJ fastq reads ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2211553945 Bing Ren, UCSD 36f76c2b09ad8d0ee7e2f6e3e9ca9302 SRA:SRR3652932 https://www.encodeproject.org/files/ENCFF407YBJ/@@download/ENCFF407YBJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF092RWB bam alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF276VDQ, ENCFF806TVZ 1799509591 ENCODE Processing Pipeline 18364fddedbd4c470ffe1ac635132a4e https://www.encodeproject.org/files/ENCFF092RWB/@@download/ENCFF092RWB.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF953WGF bam alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF407YBJ, ENCFF806TVZ 1323909171 ENCODE Processing Pipeline e1ff5614595e907e6f569ca6c8fbb728 https://www.encodeproject.org/files/ENCFF953WGF/@@download/ENCFF953WGF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF781WJB bed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF953WGF 978331 ENCODE Processing Pipeline 676dfda301a46aca6219fb47e345be0c https://www.encodeproject.org/files/ENCFF781WJB/@@download/ENCFF781WJB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF445LPH bed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF092RWB, ENCFF275UYN, ENCFF301ZSF 968534 ENCODE Processing Pipeline b791be148d553c2cbff9d24d020ec3e7 https://www.encodeproject.org/files/ENCFF445LPH/@@download/ENCFF445LPH.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF494WWH bigBed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF445LPH 2772557 ENCODE Processing Pipeline 3e2a008a2beddc85c6be1670663d272c https://www.encodeproject.org/files/ENCFF494WWH/@@download/ENCFF494WWH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF587PRW bigBed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF129SEF 2943261 ENCODE Processing Pipeline cb2af0bc0c1c6fb9ca8f089fcbc6e304 https://www.encodeproject.org/files/ENCFF587PRW/@@download/ENCFF587PRW.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF129SEF bed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF092RWB, ENCFF275UYN, ENCFF301ZSF, ENCFF953WGF 1051951 ENCODE Processing Pipeline c17787c027202de3b540b40a9a7ece28 https://www.encodeproject.org/files/ENCFF129SEF/@@download/ENCFF129SEF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF353QDN bigBed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF781WJB 2798402 ENCODE Processing Pipeline bba257a68bbae9801ce4e234a98a7376 https://www.encodeproject.org/files/ENCFF353QDN/@@download/ENCFF353QDN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF398DDF bigWig signal p-value ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF953WGF 583372642 ENCODE Processing Pipeline 9bb4a2bc9d8074e2230f9d676fad4c67 https://www.encodeproject.org/files/ENCFF398DDF/@@download/ENCFF398DDF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF764JDQ bigWig signal p-value ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF092RWB, ENCFF275UYN, ENCFF301ZSF 831694084 ENCODE Processing Pipeline 7e4712323a5a460788a4513a8d61716a https://www.encodeproject.org/files/ENCFF764JDQ/@@download/ENCFF764JDQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF891ZEZ bigWig signal p-value ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF092RWB, ENCFF275UYN, ENCFF301ZSF, ENCFF953WGF 908818274 ENCODE Processing Pipeline c165225233a41bfb07d6725051feb9cd https://www.encodeproject.org/files/ENCFF891ZEZ/@@download/ENCFF891ZEZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF739ZFD bigWig fold change over control ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF953WGF 588458077 ENCODE Processing Pipeline b2031f45fb279a3cd78508bdeb584474 https://www.encodeproject.org/files/ENCFF739ZFD/@@download/ENCFF739ZFD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF072EEG bigWig fold change over control ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF092RWB, ENCFF275UYN, ENCFF301ZSF 728583847 ENCODE Processing Pipeline a2f7c4088f3945758ab5bda50fb0dc91 https://www.encodeproject.org/files/ENCFF072EEG/@@download/ENCFF072EEG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF135CZV bigWig fold change over control ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF092RWB, ENCFF275UYN, ENCFF301ZSF, ENCFF953WGF 968266585 ENCODE Processing Pipeline 2766cde33850ffb2d9c87654fbebd937 https://www.encodeproject.org/files/ENCFF135CZV/@@download/ENCFF135CZV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF905PPJ bigBed narrowPeak replicated peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF224ZYS 2356640 ENCODE Processing Pipeline 9ae064e2187186ab7fe506a26e77095e https://www.encodeproject.org/files/ENCFF905PPJ/@@download/ENCFF905PPJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF224ZYS bed narrowPeak replicated peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF129SEF, ENCFF445LPH, ENCFF781WJB 1116363 ENCODE Processing Pipeline 85d6af01542428fbe57885c2e20fe0e8 https://www.encodeproject.org/files/ENCFF224ZYS/@@download/ENCFF224ZYS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF199UYD bam unfiltered alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF276VDQ 2907451881 ENCODE Processing Pipeline 22ac98002a5f2b18fd44b0e0fa9615c4 https://www.encodeproject.org/files/ENCFF199UYD/@@download/ENCFF199UYD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF350DQE bam unfiltered alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF407YBJ 2380095753 ENCODE Processing Pipeline 1b348cd5eef3e82d0048b1e627b2855f https://www.encodeproject.org/files/ENCFF350DQE/@@download/ENCFF350DQE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF980RAX bam alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF407YBJ 1323701767 ENCODE Processing Pipeline d4993c978f495385b36055c3b36d3ea4 https://www.encodeproject.org/files/ENCFF980RAX/@@download/ENCFF980RAX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF551EAV bam alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF276VDQ 1799188750 ENCODE Processing Pipeline 2b21aa0e5f03a2bd6267e84860dfa824 https://www.encodeproject.org/files/ENCFF551EAV/@@download/ENCFF551EAV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF998BZV bed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF396QPU, ENCFF980RAX 965444 ENCODE Processing Pipeline ed8580f8442a1af1b71e001e9c795715 https://www.encodeproject.org/files/ENCFF998BZV/@@download/ENCFF998BZV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF182UEZ bed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF551EAV 946599 ENCODE Processing Pipeline 7d2761841aaa5dc6e976c048f1795e04 https://www.encodeproject.org/files/ENCFF182UEZ/@@download/ENCFF182UEZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF677RJW bed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF551EAV, ENCFF980RAX 1105565 ENCODE Processing Pipeline 9588cb50a81e4b2f6d18326ba8e1347d https://www.encodeproject.org/files/ENCFF677RJW/@@download/ENCFF677RJW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF228FWJ bigBed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF998BZV 2784547 ENCODE Processing Pipeline 67207c3d927a601fc5bb54c7a6df0549 https://www.encodeproject.org/files/ENCFF228FWJ/@@download/ENCFF228FWJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF323SNC bigBed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF182UEZ 2731417 ENCODE Processing Pipeline 0c42233957a0887d28584d6a8c0436a6 https://www.encodeproject.org/files/ENCFF323SNC/@@download/ENCFF323SNC.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF867TER bigBed narrowPeak peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF677RJW 3062177 ENCODE Processing Pipeline 48b4d5541022747b2df8d9918570725f https://www.encodeproject.org/files/ENCFF867TER/@@download/ENCFF867TER.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF190TVG bigWig signal p-value ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF396QPU, ENCFF980RAX 655991510 ENCODE Processing Pipeline a08b015019d80669e46a7bed0c1d4e37 https://www.encodeproject.org/files/ENCFF190TVG/@@download/ENCFF190TVG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF117XKN bigWig signal p-value ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF551EAV 509232496 ENCODE Processing Pipeline b74a6af8820cec179a039b037633fa85 https://www.encodeproject.org/files/ENCFF117XKN/@@download/ENCFF117XKN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF955NTV bigWig signal p-value ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF551EAV, ENCFF980RAX 1102724773 ENCODE Processing Pipeline e1a1a7e85ccf0838f0b61962ed9b847b https://www.encodeproject.org/files/ENCFF955NTV/@@download/ENCFF955NTV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF996NAP bigWig fold change over control ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF396QPU, ENCFF980RAX 516807404 ENCODE Processing Pipeline 7d8ab8540e07bd5f9750afb38ed8dca8 https://www.encodeproject.org/files/ENCFF996NAP/@@download/ENCFF996NAP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF921NNI bigWig fold change over control ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF551EAV 609371689 ENCODE Processing Pipeline 465fde8039cc4b1e0860905af0625284 https://www.encodeproject.org/files/ENCFF921NNI/@@download/ENCFF921NNI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF581EFO bigWig fold change over control ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF551EAV, ENCFF980RAX 1092274092 ENCODE Processing Pipeline 80bb4a80ca2a3d687d3961007581e432 https://www.encodeproject.org/files/ENCFF581EFO/@@download/ENCFF581EFO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF448ZXD bed narrowPeak replicated peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF182UEZ, ENCFF677RJW, ENCFF998BZV 1115707 ENCODE Processing Pipeline dc4fff0de27d480e0764bf4f419f10a6 https://www.encodeproject.org/files/ENCFF448ZXD/@@download/ENCFF448ZXD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF935WFH bigBed narrowPeak replicated peaks ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF448ZXD 2341276 ENCODE Processing Pipeline 1f9e43d09e09809dddc1ded869abb3ca https://www.encodeproject.org/files/ENCFF935WFH/@@download/ENCFF935WFH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF002AQL fastq reads ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1024383678 Bing Ren, UCSD 5127fb68983b5a67daab0e6eb0da371a SRA:SRR3651698 https://www.encodeproject.org/files/ENCFF002AQL/@@download/ENCFF002AQL.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth ENCFF002AQO fastq reads ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1204752585 Bing Ren, UCSD 3da7df56b202a2c4d4584e8db00ffafd SRA:SRR3651699 https://www.encodeproject.org/files/ENCFF002AQO/@@download/ENCFF002AQO.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth ENCFF497EOC bam unfiltered alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQO, ENCFF806TVZ 1354977025 ENCODE Processing Pipeline 34f02dc4de102deb7cf97dfbf060af00 https://www.encodeproject.org/files/ENCFF497EOC/@@download/ENCFF497EOC.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF502LKE bam unfiltered alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQL, ENCFF806TVZ 1215326619 ENCODE Processing Pipeline 8391a91b439912815c6e842c0d2704f4 https://www.encodeproject.org/files/ENCFF502LKE/@@download/ENCFF502LKE.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF786XLC bam alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQO, ENCFF806TVZ 950089794 ENCODE Processing Pipeline 69a30feded9e26e06b38560c78960608 https://www.encodeproject.org/files/ENCFF786XLC/@@download/ENCFF786XLC.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF248DBJ bam alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQL, ENCFF806TVZ 760944597 ENCODE Processing Pipeline 6db7084cda681f9be1030021ec3e372f https://www.encodeproject.org/files/ENCFF248DBJ/@@download/ENCFF248DBJ.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF138TKK bam unfiltered alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQO, ENCFF018NEO 1109358210 ENCODE Processing Pipeline 992bac3fc73d245662d272bf49cf6f90 https://www.encodeproject.org/files/ENCFF138TKK/@@download/ENCFF138TKK.bam mm10 released mixed read lengths, low read length, low read depth ENCFF424QZD bam alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQO, ENCFF018NEO 724391712 ENCODE Processing Pipeline 73ca661ed4bc988efb6d60e3598e6bd3 https://www.encodeproject.org/files/ENCFF424QZD/@@download/ENCFF424QZD.bam mm10 released mixed read lengths, low read length, low read depth ENCFF613OCU bam unfiltered alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQL, ENCFF018NEO 1216798818 ENCODE Processing Pipeline 8c328a8edeb631e1937caa82dd293018 https://www.encodeproject.org/files/ENCFF613OCU/@@download/ENCFF613OCU.bam mm10 released mixed read lengths, low read length, low read depth ENCFF767URV bam alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQL, ENCFF018NEO 760698062 ENCODE Processing Pipeline af908c145b24edded352ebee05e1f0cf https://www.encodeproject.org/files/ENCFF767URV/@@download/ENCFF767URV.bam mm10 released mixed read lengths, low read length, low read depth ENCFF521BRF fastq reads ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 973295097 Bing Ren, UCSD c9bc8f3b9f5bb5e6bbcd9cca53514011 SRA:SRR3653126 https://www.encodeproject.org/files/ENCFF521BRF/@@download/ENCFF521BRF.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF793MCX fastq reads ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2368055961 Bing Ren, UCSD 371c5b1d89587f59f583cbc5463154d6 SRA:SRR3653127 https://www.encodeproject.org/files/ENCFF793MCX/@@download/ENCFF793MCX.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF702VXS fastq reads ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2827318706 Bing Ren, UCSD 925cfb0ae9cea45c8121a2f940b72382 SRA:SRR3653124 https://www.encodeproject.org/files/ENCFF702VXS/@@download/ENCFF702VXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF896HWH fastq reads ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 999360910 Bing Ren, UCSD a5a1ffe150cdb117fb5bd4bb6fb71e87 SRA:SRR3653125 https://www.encodeproject.org/files/ENCFF896HWH/@@download/ENCFF896HWH.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF737KZN bam alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF521BRF, ENCFF793MCX, ENCFF806TVZ 2876433829 ENCODE Processing Pipeline 2fb45ccca35ea814c02600caef6b6dbf https://www.encodeproject.org/files/ENCFF737KZN/@@download/ENCFF737KZN.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF284SJK bam alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF702VXS, ENCFF806TVZ, ENCFF896HWH 3254062083 ENCODE Processing Pipeline 956356dd83e7bf5f394ff8917ba62128 https://www.encodeproject.org/files/ENCFF284SJK/@@download/ENCFF284SJK.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF859XFM bed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF737KZN, ENCFF834ZUW 1116237 ENCODE Processing Pipeline 964f5b6d5aa76c3bda4e88fed7f947a1 https://www.encodeproject.org/files/ENCFF859XFM/@@download/ENCFF859XFM.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF826BRD bed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF284SJK, ENCFF326YEF, ENCFF834ZUW 881793 ENCODE Processing Pipeline 139ec70c560f52ec973f9f60c97756ab https://www.encodeproject.org/files/ENCFF826BRD/@@download/ENCFF826BRD.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF714DWH bigBed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF055JQF 2461285 ENCODE Processing Pipeline f60a046f84fce3be230f843f89a8b187 https://www.encodeproject.org/files/ENCFF714DWH/@@download/ENCFF714DWH.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF626KPR bigBed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF826BRD 2040310 ENCODE Processing Pipeline ce3163598144b3501b30a4ac0ca9414c https://www.encodeproject.org/files/ENCFF626KPR/@@download/ENCFF626KPR.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF499BWA bigBed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF859XFM 2533081 ENCODE Processing Pipeline 3fe2006dbf7166a13e63fafa75785648 https://www.encodeproject.org/files/ENCFF499BWA/@@download/ENCFF499BWA.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF055JQF bed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF284SJK, ENCFF326YEF, ENCFF737KZN, ENCFF834ZUW 906769 ENCODE Processing Pipeline 1e5a154c2df012891eea68842cbc9b70 https://www.encodeproject.org/files/ENCFF055JQF/@@download/ENCFF055JQF.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF362FSG bigWig signal p-value ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF737KZN, ENCFF834ZUW 989108583 ENCODE Processing Pipeline d9c054a6fd2e30c05d21a0e26817dd67 https://www.encodeproject.org/files/ENCFF362FSG/@@download/ENCFF362FSG.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF451UIH bigWig signal p-value ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF284SJK, ENCFF326YEF, ENCFF834ZUW 1279833674 ENCODE Processing Pipeline 43742696d9ae333359ef64ff6fd282a9 https://www.encodeproject.org/files/ENCFF451UIH/@@download/ENCFF451UIH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF460EXV bigWig signal p-value ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF284SJK, ENCFF326YEF, ENCFF737KZN, ENCFF834ZUW 1523962892 ENCODE Processing Pipeline 00ee989b67cf2742d6dbfe7659167687 https://www.encodeproject.org/files/ENCFF460EXV/@@download/ENCFF460EXV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF212MFE bigWig fold change over control ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF737KZN, ENCFF834ZUW 1198523773 ENCODE Processing Pipeline 7b454fcd6c70ecd15b53d51db6c930a6 https://www.encodeproject.org/files/ENCFF212MFE/@@download/ENCFF212MFE.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF483GEB bigWig fold change over control ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF284SJK, ENCFF326YEF, ENCFF834ZUW 1254535313 ENCODE Processing Pipeline edeebf6828ec5675ed234d6540aa16dc https://www.encodeproject.org/files/ENCFF483GEB/@@download/ENCFF483GEB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF856OFF bigBed narrowPeak replicated peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF167QZM 1422079 ENCODE Processing Pipeline 736290d1d4470cd92faba0bda16127cb https://www.encodeproject.org/files/ENCFF856OFF/@@download/ENCFF856OFF.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF950KQA bigWig fold change over control ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF284SJK, ENCFF326YEF, ENCFF737KZN, ENCFF834ZUW 1729650211 ENCODE Processing Pipeline eed628780e4ddb4d115ff1d6db737cee https://www.encodeproject.org/files/ENCFF950KQA/@@download/ENCFF950KQA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF167QZM bed narrowPeak replicated peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF055JQF, ENCFF826BRD, ENCFF859XFM 634742 ENCODE Processing Pipeline 10d735e95b272bb1a9358c2680176668 https://www.encodeproject.org/files/ENCFF167QZM/@@download/ENCFF167QZM.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF361UFN bam unfiltered alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF521BRF, ENCFF793MCX 4016825878 ENCODE Processing Pipeline 53f450ea8320b24be47cf5333053cb66 https://www.encodeproject.org/files/ENCFF361UFN/@@download/ENCFF361UFN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF208YNT bam unfiltered alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF702VXS, ENCFF896HWH 4578188579 ENCODE Processing Pipeline 2bbb7784aa26b1a828acc7a35be182fe https://www.encodeproject.org/files/ENCFF208YNT/@@download/ENCFF208YNT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF626OTI bam alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF702VXS, ENCFF896HWH 3253432922 ENCODE Processing Pipeline b9941ecd88ecefa6ba67dfbd417da522 https://www.encodeproject.org/files/ENCFF626OTI/@@download/ENCFF626OTI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF318OLQ bam alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF521BRF, ENCFF793MCX 2875852484 ENCODE Processing Pipeline f8d661ea2342625d8721e26399c1e85d https://www.encodeproject.org/files/ENCFF318OLQ/@@download/ENCFF318OLQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF335DRK bed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF318OLQ, ENCFF643WUI, ENCFF916TFR 1103394 ENCODE Processing Pipeline 7dd7b51b6ac20889285f6b0ec27dfde5 https://www.encodeproject.org/files/ENCFF335DRK/@@download/ENCFF335DRK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF909JGD bed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF626OTI, ENCFF916TFR 534665 ENCODE Processing Pipeline 21426bd5d0555612ebe3e911adabb7ff https://www.encodeproject.org/files/ENCFF909JGD/@@download/ENCFF909JGD.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF127DBF bigBed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF335DRK 2500564 ENCODE Processing Pipeline 1d043a70b7cecd645f0965e5805c2505 https://www.encodeproject.org/files/ENCFF127DBF/@@download/ENCFF127DBF.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF816BWZ bed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF318OLQ, ENCFF626OTI, ENCFF643WUI, ENCFF916TFR 1071359 ENCODE Processing Pipeline 040244e75f2286c9033a7b661a9fc351 https://www.encodeproject.org/files/ENCFF816BWZ/@@download/ENCFF816BWZ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF425WFA bigBed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF909JGD 1237912 ENCODE Processing Pipeline 4a1482933607b2e26eb0c816abb03a18 https://www.encodeproject.org/files/ENCFF425WFA/@@download/ENCFF425WFA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF102MYB bigBed narrowPeak peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF816BWZ 2913856 ENCODE Processing Pipeline 471617b901267845fa2f783262b6c2ca https://www.encodeproject.org/files/ENCFF102MYB/@@download/ENCFF102MYB.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF421ADI bigWig signal p-value ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF318OLQ, ENCFF643WUI, ENCFF916TFR 1252265711 ENCODE Processing Pipeline 76eff7d17fda2d3545dd36e66f2dc40b https://www.encodeproject.org/files/ENCFF421ADI/@@download/ENCFF421ADI.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF649LAQ bigWig signal p-value ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF626OTI, ENCFF916TFR 945908856 ENCODE Processing Pipeline d0bc36a24019810febf973eeb8398a76 https://www.encodeproject.org/files/ENCFF649LAQ/@@download/ENCFF649LAQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF463PMX bigWig signal p-value ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF318OLQ, ENCFF626OTI, ENCFF643WUI, ENCFF916TFR 1655355510 ENCODE Processing Pipeline b82dabd8f647c0d3435375cf2c418b98 https://www.encodeproject.org/files/ENCFF463PMX/@@download/ENCFF463PMX.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF780FGS bigWig fold change over control ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF318OLQ, ENCFF643WUI, ENCFF916TFR 1244477727 ENCODE Processing Pipeline 8b4feecdef2fa3a58f3f4a9a350f31f2 https://www.encodeproject.org/files/ENCFF780FGS/@@download/ENCFF780FGS.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF486IPE bigWig fold change over control ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF626OTI, ENCFF916TFR 1050720683 ENCODE Processing Pipeline 1b5e01a53091aaf579b9566fedb9242c https://www.encodeproject.org/files/ENCFF486IPE/@@download/ENCFF486IPE.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF376ZJO bigWig fold change over control ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF318OLQ, ENCFF626OTI, ENCFF643WUI, ENCFF916TFR 1760752909 ENCODE Processing Pipeline 8df69e4c7c3afb9a95834555dbc4c25d https://www.encodeproject.org/files/ENCFF376ZJO/@@download/ENCFF376ZJO.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF962ZLC bed narrowPeak replicated peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF335DRK, ENCFF816BWZ, ENCFF909JGD 591444 ENCODE Processing Pipeline 34eef026ea94091883d56619da9d7736 https://www.encodeproject.org/files/ENCFF962ZLC/@@download/ENCFF962ZLC.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF565FGR bigBed narrowPeak replicated peaks ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF962ZLC 1318220 ENCODE Processing Pipeline 01707ed4ce51602762a9aded3e49f9dd https://www.encodeproject.org/files/ENCFF565FGR/@@download/ENCFF565FGR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AHZ fastq reads ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1381003433 Bing Ren, UCSD ccd659f4f1fba7280873e9f44706c8c5 SRA:SRR3653157 https://www.encodeproject.org/files/ENCFF002AHZ/@@download/ENCFF002AHZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQF/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AIA fastq reads ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1438836852 Bing Ren, UCSD 11df6ae3d0880c4ede0b588835b611bd SRA:SRR3653155 https://www.encodeproject.org/files/ENCFF002AIA/@@download/ENCFF002AIA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF184TEJ bam alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHZ, ENCFF806TVZ 1012307128 ENCODE Processing Pipeline c4a8aa368fa7e37421fb8f62e66b6d14 https://www.encodeproject.org/files/ENCFF184TEJ/@@download/ENCFF184TEJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF403RZA fastq reads ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 708474501 Bing Ren, UCSD 73044dfd557213b963d8add02842291c SRA:SRR3653156 https://www.encodeproject.org/files/ENCFF403RZA/@@download/ENCFF403RZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF531DIW bam alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIA, ENCFF403RZA, ENCFF806TVZ 1068445698 ENCODE Processing Pipeline 8d83175bd95e2c1a51dc00afa9d1acff https://www.encodeproject.org/files/ENCFF531DIW/@@download/ENCFF531DIW.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF638ECY bed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF184TEJ, ENCFF868CEP 3230128 ENCODE Processing Pipeline c22538e0cfed1fa27db4a6b62bbc6224 https://www.encodeproject.org/files/ENCFF638ECY/@@download/ENCFF638ECY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF808GMR bigBed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF187HHG 6633221 ENCODE Processing Pipeline 704d8e3073433391f5c13b71b5719a2b https://www.encodeproject.org/files/ENCFF808GMR/@@download/ENCFF808GMR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF187HHG bed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF184TEJ, ENCFF462HQE, ENCFF531DIW, ENCFF868CEP 3220594 ENCODE Processing Pipeline b7c981b3e00201d00125cdc97e0e7e13 https://www.encodeproject.org/files/ENCFF187HHG/@@download/ENCFF187HHG.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF563FRB bigBed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF638ECY 6869016 ENCODE Processing Pipeline 9f7f7155dc046e10638aa6f02be33146 https://www.encodeproject.org/files/ENCFF563FRB/@@download/ENCFF563FRB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF311EOL bigWig signal p-value ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF184TEJ, ENCFF868CEP 332032313 ENCODE Processing Pipeline 9cf318f7e18ae4c459a66280d4afe741 https://www.encodeproject.org/files/ENCFF311EOL/@@download/ENCFF311EOL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF810KCP bed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF531DIW 3246756 ENCODE Processing Pipeline 9c5687eb5647d46edf3e6d656e6b113a https://www.encodeproject.org/files/ENCFF810KCP/@@download/ENCFF810KCP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF541ZVI bigBed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF810KCP 6845914 ENCODE Processing Pipeline 4b515aab3e1cbaf94d4436ac15e8e417 https://www.encodeproject.org/files/ENCFF541ZVI/@@download/ENCFF541ZVI.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF530BJO bigWig signal p-value ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF531DIW 408732187 ENCODE Processing Pipeline 1f9dad6f33cac27199947f5498a63ebe https://www.encodeproject.org/files/ENCFF530BJO/@@download/ENCFF530BJO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF167FIF bigWig fold change over control ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF184TEJ, ENCFF462HQE, ENCFF531DIW, ENCFF868CEP 776690471 ENCODE Processing Pipeline 75dc5f2fd4d339c8bf07186c09603266 https://www.encodeproject.org/files/ENCFF167FIF/@@download/ENCFF167FIF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF462HCH bed narrowPeak replicated peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF187HHG, ENCFF638ECY, ENCFF810KCP 2139864 ENCODE Processing Pipeline bd74313c072af819ba7201e22b457f52 https://www.encodeproject.org/files/ENCFF462HCH/@@download/ENCFF462HCH.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF018ATA bigBed narrowPeak replicated peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462HCH 3730047 ENCODE Processing Pipeline 579d7abd1bc610916e31722f72bf56fa https://www.encodeproject.org/files/ENCFF018ATA/@@download/ENCFF018ATA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF669NVV bigWig fold change over control ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF531DIW 404575336 ENCODE Processing Pipeline 78a2642391e689ba8f321ebc83170cbc https://www.encodeproject.org/files/ENCFF669NVV/@@download/ENCFF669NVV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF153FAH bigWig signal p-value ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF184TEJ, ENCFF462HQE, ENCFF531DIW, ENCFF868CEP 592942456 ENCODE Processing Pipeline ec0dacc4df5b842e712a7bdc8c437840 https://www.encodeproject.org/files/ENCFF153FAH/@@download/ENCFF153FAH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF038WAU bigWig fold change over control ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF184TEJ, ENCFF868CEP 410091616 ENCODE Processing Pipeline 57e65ad3e2e4df8c006ad590c95e9bf1 https://www.encodeproject.org/files/ENCFF038WAU/@@download/ENCFF038WAU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF488UFR bam unfiltered alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIA, ENCFF018NEO, ENCFF403RZA 2247543016 ENCODE Processing Pipeline 24c81496c150ad60214cfdfdde6bdf15 https://www.encodeproject.org/files/ENCFF488UFR/@@download/ENCFF488UFR.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF864NOX bam unfiltered alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHZ, ENCFF018NEO 1559700032 ENCODE Processing Pipeline 9216bec65850b47e06fdb20ec87c6d3c https://www.encodeproject.org/files/ENCFF864NOX/@@download/ENCFF864NOX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF067WJX bam alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIA, ENCFF018NEO, ENCFF403RZA 990485945 ENCODE Processing Pipeline 0273fadd8f7f78fbb16f8ab966f1a4cd https://www.encodeproject.org/files/ENCFF067WJX/@@download/ENCFF067WJX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF252MKC bam alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHZ, ENCFF018NEO 1012095693 ENCODE Processing Pipeline 32ea01d5fc8214d653937f69c2bc6ed1 https://www.encodeproject.org/files/ENCFF252MKC/@@download/ENCFF252MKC.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF548DIS bed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF067WJX, ENCFF252MKC, ENCFF383CGK, ENCFF598OHC 3245531 ENCODE Processing Pipeline 3b6ed9e1b7064ff358648b75ea8c50cc https://www.encodeproject.org/files/ENCFF548DIS/@@download/ENCFF548DIS.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF814JDP bed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF067WJX, ENCFF598OHC 3194635 ENCODE Processing Pipeline 04715942243996e328dc0c82b87596f1 https://www.encodeproject.org/files/ENCFF814JDP/@@download/ENCFF814JDP.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF484NWY bed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF252MKC, ENCFF383CGK, ENCFF598OHC 3278381 ENCODE Processing Pipeline 69277968090808ee3f819acfc25198a7 https://www.encodeproject.org/files/ENCFF484NWY/@@download/ENCFF484NWY.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF971EQR bigBed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF814JDP 6808165 ENCODE Processing Pipeline a0aa5b355722b33ec38a001d38213034 https://www.encodeproject.org/files/ENCFF971EQR/@@download/ENCFF971EQR.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF759LHR bigBed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF548DIS 6840973 ENCODE Processing Pipeline 2d71bb85cec438fb6c43c0662506bc1d https://www.encodeproject.org/files/ENCFF759LHR/@@download/ENCFF759LHR.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF434UGX bigWig signal p-value ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF067WJX, ENCFF598OHC 382481772 ENCODE Processing Pipeline ea37ed2062d82cd8888c11acc45fa4a6 https://www.encodeproject.org/files/ENCFF434UGX/@@download/ENCFF434UGX.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF834RPL bigBed narrowPeak peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF484NWY 7057977 ENCODE Processing Pipeline 986e3dceccaeb9abcb291c71ef30b4e4 https://www.encodeproject.org/files/ENCFF834RPL/@@download/ENCFF834RPL.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF067TGC bigWig signal p-value ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF252MKC, ENCFF383CGK, ENCFF598OHC 492356926 ENCODE Processing Pipeline 6bdfab8597b14a52bd904a7b73f8e5e8 https://www.encodeproject.org/files/ENCFF067TGC/@@download/ENCFF067TGC.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF039BJB bigWig signal p-value ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF067WJX, ENCFF252MKC, ENCFF383CGK, ENCFF598OHC 617785300 ENCODE Processing Pipeline 99bd051ca58b07ba5fbfd7c02d8a2f3f https://www.encodeproject.org/files/ENCFF039BJB/@@download/ENCFF039BJB.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF245WYO bigWig fold change over control ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF067WJX, ENCFF598OHC 408236118 ENCODE Processing Pipeline fa105e03feaadba70a1017d0fbba15fe https://www.encodeproject.org/files/ENCFF245WYO/@@download/ENCFF245WYO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF913KLY bigWig fold change over control ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF252MKC, ENCFF383CGK, ENCFF598OHC 525152923 ENCODE Processing Pipeline 0793a95ccdabe52fedf1a01f6cdb3677 https://www.encodeproject.org/files/ENCFF913KLY/@@download/ENCFF913KLY.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF706SAT bigWig fold change over control ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF067WJX, ENCFF252MKC, ENCFF383CGK, ENCFF598OHC 833536103 ENCODE Processing Pipeline 359d234801fd3ce55359dc19bf929c5f https://www.encodeproject.org/files/ENCFF706SAT/@@download/ENCFF706SAT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF614NAZ bed narrowPeak replicated peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF484NWY, ENCFF548DIS, ENCFF814JDP 2424661 ENCODE Processing Pipeline bb3ed5d4b471c9d50f6c362502d0ec5b https://www.encodeproject.org/files/ENCFF614NAZ/@@download/ENCFF614NAZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF441PHP bigBed narrowPeak replicated peaks ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF614NAZ 4235034 ENCODE Processing Pipeline ac28a0e1028506b1f13aa697883ce9c9 https://www.encodeproject.org/files/ENCFF441PHP/@@download/ENCFF441PHP.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF862IUC fastq reads ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1954791110 Bing Ren, UCSD 1acadce4523eb51a1f2444648e178bbd SRA:SRR3652095 https://www.encodeproject.org/files/ENCFF862IUC/@@download/ENCFF862IUC.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF593LEN fastq reads ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2245029253 Bing Ren, UCSD 79a61c65d1b50154d32962387e8750cf SRA:SRR3652094 https://www.encodeproject.org/files/ENCFF593LEN/@@download/ENCFF593LEN.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released mild to moderate bottlenecking, inconsistent platforms ENCFF831LJE bam alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF593LEN, ENCFF806TVZ 1837444707 ENCODE Processing Pipeline d9e3c9e6ee9c5ce393eca7be4ad26150 https://www.encodeproject.org/files/ENCFF831LJE/@@download/ENCFF831LJE.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF255XFJ bam alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF862IUC 1655778041 ENCODE Processing Pipeline 608b932891141c28f42600b4af98c881 https://www.encodeproject.org/files/ENCFF255XFJ/@@download/ENCFF255XFJ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF838UNL bed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF831LJE, ENCFF834ZUW 1532237 ENCODE Processing Pipeline 0fde6002d96bae6b50ce1dbe861917de https://www.encodeproject.org/files/ENCFF838UNL/@@download/ENCFF838UNL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF300OYU bigBed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF838UNL 4535390 ENCODE Processing Pipeline beae3a5f28331d19640c712fdf5fc29f https://www.encodeproject.org/files/ENCFF300OYU/@@download/ENCFF300OYU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF797ESC bigBed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF856VGR 4869991 ENCODE Processing Pipeline 75ac682e56751a371edc98d1710cb55d https://www.encodeproject.org/files/ENCFF797ESC/@@download/ENCFF797ESC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF798TMT bed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF255XFJ, ENCFF326YEF, ENCFF834ZUW 1282786 ENCODE Processing Pipeline e2a7e3d1c6d814db4d3fa0f54d912547 https://www.encodeproject.org/files/ENCFF798TMT/@@download/ENCFF798TMT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF856VGR bed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF255XFJ, ENCFF326YEF, ENCFF831LJE, ENCFF834ZUW 1682369 ENCODE Processing Pipeline d65842658e75c4498bbec38bbc30bf5f https://www.encodeproject.org/files/ENCFF856VGR/@@download/ENCFF856VGR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF524DYK bigBed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF798TMT 3859578 ENCODE Processing Pipeline 0d429499faabc05a1a4fe12dbccbbd8a https://www.encodeproject.org/files/ENCFF524DYK/@@download/ENCFF524DYK.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF790ULW bigWig signal p-value ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF255XFJ, ENCFF326YEF, ENCFF834ZUW 779164772 ENCODE Processing Pipeline 2396f2cfcf423d6a14d72641e004aa84 https://www.encodeproject.org/files/ENCFF790ULW/@@download/ENCFF790ULW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF095GSR bigWig signal p-value ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF831LJE, ENCFF834ZUW 951254393 ENCODE Processing Pipeline a150ab9367f49de1ff27af8bd8984a9b https://www.encodeproject.org/files/ENCFF095GSR/@@download/ENCFF095GSR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF600YXI bigWig signal p-value ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF255XFJ, ENCFF326YEF, ENCFF831LJE, ENCFF834ZUW 1259447287 ENCODE Processing Pipeline 6e8b9876eca5fa00b2f91c6ceef7c4fc https://www.encodeproject.org/files/ENCFF600YXI/@@download/ENCFF600YXI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF743UCP bigWig fold change over control ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF255XFJ, ENCFF326YEF, ENCFF834ZUW 889018088 ENCODE Processing Pipeline fa970caee9c0eae50f866e8be893807e https://www.encodeproject.org/files/ENCFF743UCP/@@download/ENCFF743UCP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF525YUM bigWig fold change over control ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF831LJE, ENCFF834ZUW 936170900 ENCODE Processing Pipeline b56aca5aa1ab08935763466940d96023 https://www.encodeproject.org/files/ENCFF525YUM/@@download/ENCFF525YUM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF917EZM bigWig fold change over control ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF255XFJ, ENCFF326YEF, ENCFF831LJE, ENCFF834ZUW 1323296485 ENCODE Processing Pipeline d9cc4bdaf10fcbcb9274ac680eb80340 https://www.encodeproject.org/files/ENCFF917EZM/@@download/ENCFF917EZM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF478ROC bed narrowPeak replicated peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF798TMT, ENCFF838UNL, ENCFF856VGR 1320751 ENCODE Processing Pipeline d0d9a8560b7d62d4622ec00cf774f11f https://www.encodeproject.org/files/ENCFF478ROC/@@download/ENCFF478ROC.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF832FGX bigBed narrowPeak replicated peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF478ROC 2960560 ENCODE Processing Pipeline 6581af3a53d641c9345fd099467131bb https://www.encodeproject.org/files/ENCFF832FGX/@@download/ENCFF832FGX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF137HMM bam unfiltered alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF593LEN 2641183032 ENCODE Processing Pipeline 19b690c96bf429f7868e00d075019068 https://www.encodeproject.org/files/ENCFF137HMM/@@download/ENCFF137HMM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF768KBX bam unfiltered alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF862IUC 2328073440 ENCODE Processing Pipeline c0a7c4c54de85dbae9d2bff2008253af https://www.encodeproject.org/files/ENCFF768KBX/@@download/ENCFF768KBX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF892TDG bam alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF593LEN 1837167150 ENCODE Processing Pipeline bf6e3f43ea4708985ad16a6a9a59fe6c https://www.encodeproject.org/files/ENCFF892TDG/@@download/ENCFF892TDG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF054UNT bam alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF862IUC 1655517255 ENCODE Processing Pipeline 99434f1f04aecc384a74037984dfaffc https://www.encodeproject.org/files/ENCFF054UNT/@@download/ENCFF054UNT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF066NUM bed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF054UNT, ENCFF643WUI 1334271 ENCODE Processing Pipeline 780b850dfa29811135702b424cff1c4e https://www.encodeproject.org/files/ENCFF066NUM/@@download/ENCFF066NUM.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF892MJY bed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF054UNT, ENCFF643WUI, ENCFF892TDG, ENCFF916TFR 1688933 ENCODE Processing Pipeline 1bf8e073c9a7d8613aa8000d74d03d52 https://www.encodeproject.org/files/ENCFF892MJY/@@download/ENCFF892MJY.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF276GOR bigBed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF289MFX 4379086 ENCODE Processing Pipeline 6ce87392978b0f503abc3b810db30a3c https://www.encodeproject.org/files/ENCFF276GOR/@@download/ENCFF276GOR.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF289MFX bed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF892TDG, ENCFF916TFR 1471209 ENCODE Processing Pipeline 58b772809af24f40e46a2051e424ca7a https://www.encodeproject.org/files/ENCFF289MFX/@@download/ENCFF289MFX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF272JAO bigBed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF066NUM 4045452 ENCODE Processing Pipeline b500c33e20ef13a2424bbe7bcd9c30dd https://www.encodeproject.org/files/ENCFF272JAO/@@download/ENCFF272JAO.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF254IXI bigBed narrowPeak peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF892MJY 4879487 ENCODE Processing Pipeline 4cdf9e69fb64b0d96e35dc5129dc6298 https://www.encodeproject.org/files/ENCFF254IXI/@@download/ENCFF254IXI.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF341EWT bigWig signal p-value ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF054UNT, ENCFF643WUI 724317835 ENCODE Processing Pipeline 0206d620122b3f41fae0b63a5b088088 https://www.encodeproject.org/files/ENCFF341EWT/@@download/ENCFF341EWT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF597DXE bigWig signal p-value ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF892TDG, ENCFF916TFR 594415510 ENCODE Processing Pipeline b253ffff58b164f22f22451fc93e085c https://www.encodeproject.org/files/ENCFF597DXE/@@download/ENCFF597DXE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF091RPM bigWig signal p-value ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF054UNT, ENCFF643WUI, ENCFF892TDG, ENCFF916TFR 1312040453 ENCODE Processing Pipeline 22c1b5e205b76d5fe5a767825db81978 https://www.encodeproject.org/files/ENCFF091RPM/@@download/ENCFF091RPM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF781DQA bigWig fold change over control ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF054UNT, ENCFF643WUI 709019083 ENCODE Processing Pipeline fd75516e8d7fa4e242f4803a66d32c2f https://www.encodeproject.org/files/ENCFF781DQA/@@download/ENCFF781DQA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF454YBV bigWig fold change over control ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF892TDG, ENCFF916TFR 755585250 ENCODE Processing Pipeline 795a6f481c8337d5df2aaa401302bdf1 https://www.encodeproject.org/files/ENCFF454YBV/@@download/ENCFF454YBV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF616CNP bigWig fold change over control ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF054UNT, ENCFF643WUI, ENCFF892TDG, ENCFF916TFR 1398492135 ENCODE Processing Pipeline ae8e71b65f24b9546d9ff2a4c8cb166b https://www.encodeproject.org/files/ENCFF616CNP/@@download/ENCFF616CNP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF447XAK bed narrowPeak replicated peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF066NUM, ENCFF289MFX, ENCFF892MJY 1309487 ENCODE Processing Pipeline 5f97e5d37037abd71a8862aa87837e67 https://www.encodeproject.org/files/ENCFF447XAK/@@download/ENCFF447XAK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF794JBV bigBed narrowPeak replicated peaks ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF447XAK 2936807 ENCODE Processing Pipeline 647f9fd43ce71c82910fe6cb7258f005 https://www.encodeproject.org/files/ENCFF794JBV/@@download/ENCFF794JBV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF073GXE fastq reads ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2419768637 Bing Ren, UCSD b5b205a75485ea0edddd28176760894d SRA:SRR3652039 https://www.encodeproject.org/files/ENCFF073GXE/@@download/ENCFF073GXE.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released inconsistent platforms ENCFF469MNG fastq reads ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2076576705 Bing Ren, UCSD 81ace94dace215d3078f0dbc5daad112 SRA:SRR3652038 https://www.encodeproject.org/files/ENCFF469MNG/@@download/ENCFF469MNG.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released inconsistent platforms ENCFF313IPE bam alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF073GXE, ENCFF806TVZ 1932408821 ENCODE Processing Pipeline 196d903d81cc4df3260d2c67236ed63c https://www.encodeproject.org/files/ENCFF313IPE/@@download/ENCFF313IPE.bam mm10-minimal archived inconsistent platforms ENCFF750GPH bam alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF469MNG, ENCFF806TVZ 1695696888 ENCODE Processing Pipeline aedafdebf6bf15ea0d6f17833561edb8 https://www.encodeproject.org/files/ENCFF750GPH/@@download/ENCFF750GPH.bam mm10-minimal archived inconsistent platforms ENCFF678EUR bed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF313IPE, ENCFF582LOU 872279 ENCODE Processing Pipeline 0e34bf74aebc24bda7c85ebb91169e2a https://www.encodeproject.org/files/ENCFF678EUR/@@download/ENCFF678EUR.bed.gz mm10-minimal archived inconsistent platforms ENCFF546FLI bed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF750GPH 921757 ENCODE Processing Pipeline d184a08b75729227c83ff6c1558b2445 https://www.encodeproject.org/files/ENCFF546FLI/@@download/ENCFF546FLI.bed.gz mm10-minimal archived inconsistent platforms ENCFF647AGS bigBed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF678EUR 2216307 ENCODE Processing Pipeline ec6af50defa960739cb4aea09a083eab https://www.encodeproject.org/files/ENCFF647AGS/@@download/ENCFF647AGS.bigBed mm10-minimal archived inconsistent platforms ENCFF389NKR bed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF313IPE, ENCFF582LOU, ENCFF750GPH 1147558 ENCODE Processing Pipeline 4f88c17d406c06ea36840a97fe937495 https://www.encodeproject.org/files/ENCFF389NKR/@@download/ENCFF389NKR.bed.gz mm10-minimal archived inconsistent platforms ENCFF863VEE bigBed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF389NKR 2747855 ENCODE Processing Pipeline 3e688ff8c18133446c8f6c9a8b4d8a29 https://www.encodeproject.org/files/ENCFF863VEE/@@download/ENCFF863VEE.bigBed mm10-minimal archived inconsistent platforms ENCFF450TCQ bigBed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF546FLI 2321512 ENCODE Processing Pipeline 6e7bc78f7743d439627e87f92eda255e https://www.encodeproject.org/files/ENCFF450TCQ/@@download/ENCFF450TCQ.bigBed mm10-minimal archived inconsistent platforms ENCFF356UNJ bigWig signal p-value ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF313IPE, ENCFF582LOU 724005275 ENCODE Processing Pipeline e9b46961fb335c6468182a41e27cd59c https://www.encodeproject.org/files/ENCFF356UNJ/@@download/ENCFF356UNJ.bigWig mm10-minimal archived inconsistent platforms ENCFF996HSY bigWig signal p-value ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF750GPH 499092532 ENCODE Processing Pipeline b91b9de1a69b5b9109c89e72ff1ae150 https://www.encodeproject.org/files/ENCFF996HSY/@@download/ENCFF996HSY.bigWig mm10-minimal archived inconsistent platforms ENCFF943PDZ bigWig signal p-value ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF313IPE, ENCFF582LOU, ENCFF750GPH 895573074 ENCODE Processing Pipeline d2331d186d56f903a9aa1e0330a4544c https://www.encodeproject.org/files/ENCFF943PDZ/@@download/ENCFF943PDZ.bigWig mm10-minimal archived inconsistent platforms ENCFF570PXO bigWig fold change over control ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF313IPE, ENCFF582LOU 688140624 ENCODE Processing Pipeline 28b3bdf849cb6bbead10aa14a72d856f https://www.encodeproject.org/files/ENCFF570PXO/@@download/ENCFF570PXO.bigWig mm10-minimal archived inconsistent platforms ENCFF954OWD bigWig fold change over control ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF750GPH 603196103 ENCODE Processing Pipeline ef6a39bf5621c9122714003061db0801 https://www.encodeproject.org/files/ENCFF954OWD/@@download/ENCFF954OWD.bigWig mm10-minimal archived inconsistent platforms ENCFF188WVH bigWig fold change over control ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF313IPE, ENCFF582LOU, ENCFF750GPH 1243159623 ENCODE Processing Pipeline a5ec05b194d99f3bd052bfbb3de0fe56 https://www.encodeproject.org/files/ENCFF188WVH/@@download/ENCFF188WVH.bigWig mm10-minimal archived inconsistent platforms ENCFF450HMV bigBed narrowPeak replicated peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF193AZN 1678146 ENCODE Processing Pipeline 49238ef79386ea9e5876169d080bf398 https://www.encodeproject.org/files/ENCFF450HMV/@@download/ENCFF450HMV.bigBed mm10-minimal archived inconsistent platforms ENCFF193AZN bed narrowPeak replicated peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF389NKR, ENCFF546FLI, ENCFF678EUR 693816 ENCODE Processing Pipeline f88a9aadccfb1168bf4bbf1faaa50d75 https://www.encodeproject.org/files/ENCFF193AZN/@@download/ENCFF193AZN.bed.gz mm10-minimal archived inconsistent platforms ENCFF100BFB bam unfiltered alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF469MNG 2493839304 ENCODE Processing Pipeline 06ff48229539d80d962c35bddd5b058b https://www.encodeproject.org/files/ENCFF100BFB/@@download/ENCFF100BFB.bam mm10 released inconsistent platforms ENCFF081AUU bam unfiltered alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF073GXE 2891865450 ENCODE Processing Pipeline 0d8f0576f2186a659fba0edfe895b055 https://www.encodeproject.org/files/ENCFF081AUU/@@download/ENCFF081AUU.bam mm10 released inconsistent platforms ENCFF032NLC bam alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF073GXE 1931952718 ENCODE Processing Pipeline 849b80f0198ba49f986bbcaae5105e92 https://www.encodeproject.org/files/ENCFF032NLC/@@download/ENCFF032NLC.bam mm10 released inconsistent platforms ENCFF751TIJ bam alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF469MNG 1695297710 ENCODE Processing Pipeline a14ab72468f88aadaa8845496001454b https://www.encodeproject.org/files/ENCFF751TIJ/@@download/ENCFF751TIJ.bam mm10 released inconsistent platforms ENCFF356ERQ bed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF032NLC, ENCFF245OIS 831277 ENCODE Processing Pipeline 0694ba651918ebfd64c6e36447dda5eb https://www.encodeproject.org/files/ENCFF356ERQ/@@download/ENCFF356ERQ.bed.gz mm10 released inconsistent platforms ENCFF146GGK bed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF751TIJ 910487 ENCODE Processing Pipeline 52b94ed2374bca1275deaee8f8130754 https://www.encodeproject.org/files/ENCFF146GGK/@@download/ENCFF146GGK.bed.gz mm10 released inconsistent platforms ENCFF094BQQ bed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF032NLC, ENCFF245OIS, ENCFF389YBT, ENCFF751TIJ 1049193 ENCODE Processing Pipeline b46055d4b4ab906ffd868bd604d2292d https://www.encodeproject.org/files/ENCFF094BQQ/@@download/ENCFF094BQQ.bed.gz mm10 released inconsistent platforms ENCFF392OIJ bigBed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF356ERQ 2122903 ENCODE Processing Pipeline 17404be236692eb0a225bb53f23548e0 https://www.encodeproject.org/files/ENCFF392OIJ/@@download/ENCFF392OIJ.bigBed mm10 released inconsistent platforms ENCFF622GCY bigBed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF094BQQ 3149660 ENCODE Processing Pipeline 1eac6a64f3a2ce2a87c1f11bde40b6d4 https://www.encodeproject.org/files/ENCFF622GCY/@@download/ENCFF622GCY.bigBed mm10 released inconsistent platforms ENCFF363ACF bigBed narrowPeak peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF146GGK 2303851 ENCODE Processing Pipeline e8213affa39e1df7d10b7176b6fa9b29 https://www.encodeproject.org/files/ENCFF363ACF/@@download/ENCFF363ACF.bigBed mm10 released inconsistent platforms ENCFF528EGB bigWig signal p-value ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF032NLC, ENCFF245OIS 624678949 ENCODE Processing Pipeline 19ccf24a6ca99a87c8ff45cc0d198c72 https://www.encodeproject.org/files/ENCFF528EGB/@@download/ENCFF528EGB.bigWig mm10 released inconsistent platforms ENCFF947JKB bigWig signal p-value ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF751TIJ 531460424 ENCODE Processing Pipeline cc23eb0662f7224461520f6582b5a787 https://www.encodeproject.org/files/ENCFF947JKB/@@download/ENCFF947JKB.bigWig mm10 released inconsistent platforms ENCFF457TBH bigWig signal p-value ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF032NLC, ENCFF245OIS, ENCFF389YBT, ENCFF751TIJ 1193521910 ENCODE Processing Pipeline 1f01c32fe0e0d94d4ecd362d75882956 https://www.encodeproject.org/files/ENCFF457TBH/@@download/ENCFF457TBH.bigWig mm10 released inconsistent platforms ENCFF514TAP bigWig fold change over control ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF032NLC, ENCFF245OIS 695720727 ENCODE Processing Pipeline 4d4116b4abb5f209ba94011bbec11415 https://www.encodeproject.org/files/ENCFF514TAP/@@download/ENCFF514TAP.bigWig mm10 released inconsistent platforms ENCFF337JWY bigWig fold change over control ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF751TIJ 651733148 ENCODE Processing Pipeline c2b366630dc8a8a90175cef098e2187b https://www.encodeproject.org/files/ENCFF337JWY/@@download/ENCFF337JWY.bigWig mm10 released inconsistent platforms ENCFF104WUV bigWig fold change over control ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF032NLC, ENCFF245OIS, ENCFF389YBT, ENCFF751TIJ 1262676392 ENCODE Processing Pipeline 80f73c330d6dd4b1b86d357d0df537c8 https://www.encodeproject.org/files/ENCFF104WUV/@@download/ENCFF104WUV.bigWig mm10 released inconsistent platforms ENCFF537DMQ bed narrowPeak replicated peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF094BQQ, ENCFF146GGK, ENCFF356ERQ 690173 ENCODE Processing Pipeline c0a64ec9e77a404bdd01bf9f16d02f27 https://www.encodeproject.org/files/ENCFF537DMQ/@@download/ENCFF537DMQ.bed.gz mm10 released inconsistent platforms ENCFF050VQP bigBed narrowPeak replicated peaks ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF537DMQ 1670389 ENCODE Processing Pipeline 47da4d898bafaaf69da33fb07daf44f9 https://www.encodeproject.org/files/ENCFF050VQP/@@download/ENCFF050VQP.bigBed mm10 released inconsistent platforms ENCFF002EUD fastq reads ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1049727321 Bing Ren, UCSD 113c0cf6741da04701690555334771fa SRA:SRR3652091 https://www.encodeproject.org/files/ENCFF002EUD/@@download/ENCFF002EUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYA/ released low read length, control low read depth, low read depth ENCFF002EUF fastq reads ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1270131918 Bing Ren, UCSD e948de77cf8c67e945be01b9844547dc SRA:SRR3652090 https://www.encodeproject.org/files/ENCFF002EUF/@@download/ENCFF002EUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXY/ released low read length, control low read depth, low read depth ENCFF934QPK bam alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUF, ENCFF806TVZ 1111526778 ENCODE Processing Pipeline cb4762c49a09efaea205313125f05603 https://www.encodeproject.org/files/ENCFF934QPK/@@download/ENCFF934QPK.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF411EBS bam alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUD, ENCFF806TVZ 932876868 ENCODE Processing Pipeline a6bf36908b86bfa5765b0fd0b4cd685f https://www.encodeproject.org/files/ENCFF411EBS/@@download/ENCFF411EBS.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF107BIB bed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF411EBS, ENCFF934QPK 902917 ENCODE Processing Pipeline e806cc5426006b71006996849d689fba https://www.encodeproject.org/files/ENCFF107BIB/@@download/ENCFF107BIB.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF673OYO bigBed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF678KLZ 3293843 ENCODE Processing Pipeline a0f88eb8da2ae56e73da0347c3dc6ef0 https://www.encodeproject.org/files/ENCFF673OYO/@@download/ENCFF673OYO.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF678KLZ bed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF411EBS 1087562 ENCODE Processing Pipeline a128d48cc31463c5c6d9ebfa385e12cb https://www.encodeproject.org/files/ENCFF678KLZ/@@download/ENCFF678KLZ.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF751YDA bigBed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF882UQM 3322771 ENCODE Processing Pipeline 6bc306a3c3a46d296ead0e7d4fc236ce https://www.encodeproject.org/files/ENCFF751YDA/@@download/ENCFF751YDA.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF882UQM bed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF934QPK 1103630 ENCODE Processing Pipeline 429e4089a2568d21a009985f735d06f5 https://www.encodeproject.org/files/ENCFF882UQM/@@download/ENCFF882UQM.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF585CRV bigBed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF107BIB 2708279 ENCODE Processing Pipeline 61b8f59f9794402ac41806a4d25c2ccb https://www.encodeproject.org/files/ENCFF585CRV/@@download/ENCFF585CRV.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF679YTZ bigWig signal p-value ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF411EBS 427533527 ENCODE Processing Pipeline 49a0f939094a9f6c473febad6bdb7435 https://www.encodeproject.org/files/ENCFF679YTZ/@@download/ENCFF679YTZ.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF580PCA bigWig signal p-value ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF411EBS, ENCFF934QPK 554022833 ENCODE Processing Pipeline e5d67186b958db2b84ed17019d4f67cc https://www.encodeproject.org/files/ENCFF580PCA/@@download/ENCFF580PCA.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF812TYB bigWig signal p-value ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF934QPK 434262310 ENCODE Processing Pipeline f8a5f7ae1a5f7880a21f2c2e595d13e8 https://www.encodeproject.org/files/ENCFF812TYB/@@download/ENCFF812TYB.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF242UDI bigWig fold change over control ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF411EBS 432653115 ENCODE Processing Pipeline 0ff3d34eb90c01ae0aa6137224cf20a9 https://www.encodeproject.org/files/ENCFF242UDI/@@download/ENCFF242UDI.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF091RMQ bigWig fold change over control ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF934QPK 488146495 ENCODE Processing Pipeline 2d0da12b1a4fe887f3438e12ff21d282 https://www.encodeproject.org/files/ENCFF091RMQ/@@download/ENCFF091RMQ.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF475UJG bigWig fold change over control ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF411EBS, ENCFF934QPK 724208437 ENCODE Processing Pipeline ad8fea2eba1d633dd7205d15492e87cf https://www.encodeproject.org/files/ENCFF475UJG/@@download/ENCFF475UJG.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF300DMA bed narrowPeak replicated peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF107BIB, ENCFF678KLZ, ENCFF882UQM 1057151 ENCODE Processing Pipeline 5dab2dd14625b158d4b1e76b8ecf19fa https://www.encodeproject.org/files/ENCFF300DMA/@@download/ENCFF300DMA.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF918YQE bigBed narrowPeak replicated peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF300DMA 2354839 ENCODE Processing Pipeline f27a5ab49b797e14e6d193f46d46fc4a https://www.encodeproject.org/files/ENCFF918YQE/@@download/ENCFF918YQE.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF066NXA bam alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUD, ENCFF018NEO 932712351 ENCODE Processing Pipeline 964c405363b7094486c7561aa5c45bb5 https://www.encodeproject.org/files/ENCFF066NXA/@@download/ENCFF066NXA.bam mm10 released low read length, control low read depth, low read depth ENCFF574AMT bam unfiltered alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUF, ENCFF018NEO 1601236117 ENCODE Processing Pipeline 4bfb8adb2f11a02cb838f5a358269d1c https://www.encodeproject.org/files/ENCFF574AMT/@@download/ENCFF574AMT.bam mm10 released low read length, control low read depth, low read depth ENCFF171DND bam unfiltered alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUD, ENCFF018NEO 1328301407 ENCODE Processing Pipeline 02b0e22f9782562f9b237d971e45e1c2 https://www.encodeproject.org/files/ENCFF171DND/@@download/ENCFF171DND.bam mm10 released low read length, control low read depth, low read depth ENCFF125QDH bam alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUF, ENCFF018NEO 1111340889 ENCODE Processing Pipeline 69af8d369d8056398cc86fc95c81aceb https://www.encodeproject.org/files/ENCFF125QDH/@@download/ENCFF125QDH.bam mm10 released low read length, control low read depth, low read depth ENCFF626PEU bed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF066NXA, ENCFF855ISH 1088559 ENCODE Processing Pipeline bea1c3b6bd1cd271d26b1bbdb778b1ca https://www.encodeproject.org/files/ENCFF626PEU/@@download/ENCFF626PEU.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF620WQP bed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF125QDH, ENCFF855ISH 659047 ENCODE Processing Pipeline 2db9f022e17e11a2a04d3ecd2170f352 https://www.encodeproject.org/files/ENCFF620WQP/@@download/ENCFF620WQP.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF993KDM bed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF066NXA, ENCFF125QDH, ENCFF855ISH 904448 ENCODE Processing Pipeline ba75408194e324062880983ee905e119 https://www.encodeproject.org/files/ENCFF993KDM/@@download/ENCFF993KDM.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF149THJ bigBed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF993KDM 2715524 ENCODE Processing Pipeline fbf21abf98fc81ace1e6f9a48b001c18 https://www.encodeproject.org/files/ENCFF149THJ/@@download/ENCFF149THJ.bigBed mm10 released low read length, control low read depth, low read depth ENCFF399AFD bigWig signal p-value ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF066NXA, ENCFF855ISH 422997354 ENCODE Processing Pipeline 4da94b379329bf81552844b313c429cb https://www.encodeproject.org/files/ENCFF399AFD/@@download/ENCFF399AFD.bigWig mm10 released low read length, control low read depth, low read depth ENCFF653BPI bigBed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF626PEU 3299774 ENCODE Processing Pipeline da33bef924dfc5861518107b5ed5b1cb https://www.encodeproject.org/files/ENCFF653BPI/@@download/ENCFF653BPI.bigBed mm10 released low read length, control low read depth, low read depth ENCFF375ONV bigBed narrowPeak peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF620WQP 2085011 ENCODE Processing Pipeline 796df7551b285a946e7e1123af444c81 https://www.encodeproject.org/files/ENCFF375ONV/@@download/ENCFF375ONV.bigBed mm10 released low read length, control low read depth, low read depth ENCFF605MMT bigWig signal p-value ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF125QDH, ENCFF855ISH 283253651 ENCODE Processing Pipeline 9d1a6019efcae9207e5f239996fd09e6 https://www.encodeproject.org/files/ENCFF605MMT/@@download/ENCFF605MMT.bigWig mm10 released low read length, control low read depth, low read depth ENCFF551RLD bigWig signal p-value ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF066NXA, ENCFF125QDH, ENCFF855ISH 556028260 ENCODE Processing Pipeline 90de371e52ac2c439412421e8f96b71b https://www.encodeproject.org/files/ENCFF551RLD/@@download/ENCFF551RLD.bigWig mm10 released low read length, control low read depth, low read depth ENCFF659IBG bigWig fold change over control ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF066NXA, ENCFF855ISH 432231706 ENCODE Processing Pipeline 0abfd38ffe54ee678afacba07bf02e12 https://www.encodeproject.org/files/ENCFF659IBG/@@download/ENCFF659IBG.bigWig mm10 released low read length, control low read depth, low read depth ENCFF552XGZ bigWig fold change over control ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF125QDH, ENCFF855ISH 383059427 ENCODE Processing Pipeline 5167883432457de25c8c22854a52a5b4 https://www.encodeproject.org/files/ENCFF552XGZ/@@download/ENCFF552XGZ.bigWig mm10 released low read length, control low read depth, low read depth ENCFF163DQS bigWig fold change over control ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF066NXA, ENCFF125QDH, ENCFF855ISH 718213688 ENCODE Processing Pipeline fc3c0ef00ee5da187c7d42d5c27d4bea https://www.encodeproject.org/files/ENCFF163DQS/@@download/ENCFF163DQS.bigWig mm10 released low read length, control low read depth, low read depth ENCFF548SPK bed narrowPeak replicated peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF620WQP, ENCFF626PEU, ENCFF993KDM 988795 ENCODE Processing Pipeline c83a2b5bb548ce54b3882bfcd02c3e8e https://www.encodeproject.org/files/ENCFF548SPK/@@download/ENCFF548SPK.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF878EVB bigBed narrowPeak replicated peaks ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF548SPK 2220143 ENCODE Processing Pipeline bdaf8e3da5ce0e80bdda8d0c9b8e3a5a https://www.encodeproject.org/files/ENCFF878EVB/@@download/ENCFF878EVB.bigBed mm10 released low read length, control low read depth, low read depth ENCFF267BGC fastq reads ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2265321047 Bing Ren, UCSD f565b43fea7b84b941a36c095d524770 SRA:SRR3652457 https://www.encodeproject.org/files/ENCFF267BGC/@@download/ENCFF267BGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released mild to moderate bottlenecking, inconsistent platforms ENCFF856VRD fastq reads ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2295498777 Bing Ren, UCSD ef39f844871d67edee366a668ed24f28 SRA:SRR3652456 https://www.encodeproject.org/files/ENCFF856VRD/@@download/ENCFF856VRD.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released mild to moderate bottlenecking, inconsistent platforms ENCFF965JWL bam alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF856VRD 1870558692 ENCODE Processing Pipeline 45111f3971dc8ea63a16d3ea9b70c5ae https://www.encodeproject.org/files/ENCFF965JWL/@@download/ENCFF965JWL.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF221ZQM bam alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF267BGC, ENCFF806TVZ 1801856985 ENCODE Processing Pipeline 6e508a7f39df10d18627dfaae04e6703 https://www.encodeproject.org/files/ENCFF221ZQM/@@download/ENCFF221ZQM.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF644WNA bed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF221ZQM, ENCFF241ENQ 1633025 ENCODE Processing Pipeline 9e15cd2783f06effa1e54615c1245cad https://www.encodeproject.org/files/ENCFF644WNA/@@download/ENCFF644WNA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF317KCO bed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF221ZQM, ENCFF241ENQ, ENCFF965JWL 2002685 ENCODE Processing Pipeline dd40829717d8a5339a559b841b7a5bfd https://www.encodeproject.org/files/ENCFF317KCO/@@download/ENCFF317KCO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF993AYQ bed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF965JWL 1694127 ENCODE Processing Pipeline 76da1b221d70dbdedabb086b5bd74451 https://www.encodeproject.org/files/ENCFF993AYQ/@@download/ENCFF993AYQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF242PYQ bigBed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF993AYQ 4731623 ENCODE Processing Pipeline 6072435591869b3dffab44634f5298e8 https://www.encodeproject.org/files/ENCFF242PYQ/@@download/ENCFF242PYQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF123FXG bigBed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF644WNA 4609069 ENCODE Processing Pipeline 3e606aa6ac0953ab8b41514d7fb9c4d2 https://www.encodeproject.org/files/ENCFF123FXG/@@download/ENCFF123FXG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF520KCX bigWig signal p-value ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF221ZQM, ENCFF241ENQ 574104725 ENCODE Processing Pipeline e4debace53b5c226ab8259b5eb97d8df https://www.encodeproject.org/files/ENCFF520KCX/@@download/ENCFF520KCX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF220AFG bigBed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF317KCO 5413991 ENCODE Processing Pipeline 23640f8978240943cd89535fcf973a85 https://www.encodeproject.org/files/ENCFF220AFG/@@download/ENCFF220AFG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF711PZE bigWig signal p-value ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF965JWL 527216120 ENCODE Processing Pipeline b5fc2f7a6dfe76d51a2923b4aa81a3b0 https://www.encodeproject.org/files/ENCFF711PZE/@@download/ENCFF711PZE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF861UBX bigWig signal p-value ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF221ZQM, ENCFF241ENQ, ENCFF965JWL 1110920448 ENCODE Processing Pipeline 1bd6555ae521d730252af3014ec84d60 https://www.encodeproject.org/files/ENCFF861UBX/@@download/ENCFF861UBX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF864WIN bigWig fold change over control ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF221ZQM, ENCFF241ENQ 703935971 ENCODE Processing Pipeline 1df9257a3a8ac57b21d70806f6210de7 https://www.encodeproject.org/files/ENCFF864WIN/@@download/ENCFF864WIN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF846CMV bigWig fold change over control ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF965JWL 677468349 ENCODE Processing Pipeline 878f9f1793d5de5961d1fba43a4d3b8f https://www.encodeproject.org/files/ENCFF846CMV/@@download/ENCFF846CMV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF349ZWP bigWig fold change over control ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF221ZQM, ENCFF241ENQ, ENCFF965JWL 1304196892 ENCODE Processing Pipeline cb71434b76963d3daf8c241c0071d722 https://www.encodeproject.org/files/ENCFF349ZWP/@@download/ENCFF349ZWP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF155NDD bed narrowPeak replicated peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF317KCO, ENCFF644WNA, ENCFF993AYQ 1765480 ENCODE Processing Pipeline b827ec9382c90709a11a58bc1e2e7594 https://www.encodeproject.org/files/ENCFF155NDD/@@download/ENCFF155NDD.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF442TLR bigBed narrowPeak replicated peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF155NDD 3572017 ENCODE Processing Pipeline 989fd32337b99591e457c0d7315e7590 https://www.encodeproject.org/files/ENCFF442TLR/@@download/ENCFF442TLR.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF990DZY bam unfiltered alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF267BGC 2636039978 ENCODE Processing Pipeline 5d8913ab78a1b6b54c2b526f65fc1482 https://www.encodeproject.org/files/ENCFF990DZY/@@download/ENCFF990DZY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF442APH bam unfiltered alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF856VRD 2680059986 ENCODE Processing Pipeline 367e1aaaa8bb2e224bf0621775dad66b https://www.encodeproject.org/files/ENCFF442APH/@@download/ENCFF442APH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF576RBC bam alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF267BGC 1801505653 ENCODE Processing Pipeline 3a532ff099b89ba2d16c6923a1d8c742 https://www.encodeproject.org/files/ENCFF576RBC/@@download/ENCFF576RBC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF261KJB bam alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF856VRD 1870240020 ENCODE Processing Pipeline 2274c242b8a550de07a7ba07e5dc9e49 https://www.encodeproject.org/files/ENCFF261KJB/@@download/ENCFF261KJB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF491CJN bed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF576RBC 1672827 ENCODE Processing Pipeline 3f3c3053da163543d3a51055c7318ee6 https://www.encodeproject.org/files/ENCFF491CJN/@@download/ENCFF491CJN.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF750YDY bed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF261KJB, ENCFF642FOT 1865610 ENCODE Processing Pipeline 13b672688591a1d510b5c008b8555170 https://www.encodeproject.org/files/ENCFF750YDY/@@download/ENCFF750YDY.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF676HNZ bed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF261KJB, ENCFF487AIV, ENCFF576RBC, ENCFF642FOT 2010892 ENCODE Processing Pipeline a88543117354c55400b41de70d6aac4e https://www.encodeproject.org/files/ENCFF676HNZ/@@download/ENCFF676HNZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF351WPZ bigBed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF491CJN 4689141 ENCODE Processing Pipeline 0c9fa74684aa1a93d10d2d04484a40de https://www.encodeproject.org/files/ENCFF351WPZ/@@download/ENCFF351WPZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF944JLD bigBed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF750YDY 5179451 ENCODE Processing Pipeline da44965d36e3d051673f9d80b376cb32 https://www.encodeproject.org/files/ENCFF944JLD/@@download/ENCFF944JLD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF677QNW bigBed narrowPeak peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF676HNZ 5435787 ENCODE Processing Pipeline 4f429702a6d8fff657403d10189c271f https://www.encodeproject.org/files/ENCFF677QNW/@@download/ENCFF677QNW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF466HSE bigWig signal p-value ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus 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https://www.encodeproject.org/files/ENCFF323AAL/@@download/ENCFF323AAL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF248LCQ bigWig fold change over control ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF576RBC 733867105 ENCODE Processing Pipeline e1b10565cea5f2ca168bd22a37988cff https://www.encodeproject.org/files/ENCFF248LCQ/@@download/ENCFF248LCQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF401HXX bigWig fold change over control ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF261KJB, ENCFF642FOT 726847991 ENCODE Processing Pipeline a5078b18615088fa07b99998f28fe2d5 https://www.encodeproject.org/files/ENCFF401HXX/@@download/ENCFF401HXX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF021RTZ bigWig fold change over control ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF261KJB, ENCFF487AIV, ENCFF576RBC, ENCFF642FOT 1382472265 ENCODE Processing Pipeline cd244bebad5afaa9a1ddb72a1928b921 https://www.encodeproject.org/files/ENCFF021RTZ/@@download/ENCFF021RTZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF309CWW bed narrowPeak replicated peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF491CJN, ENCFF676HNZ, ENCFF750YDY 1825011 ENCODE Processing Pipeline 48d0f5ed22e7728d05ac8e015522a3d5 https://www.encodeproject.org/files/ENCFF309CWW/@@download/ENCFF309CWW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF289SRI bigBed narrowPeak replicated peaks ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF309CWW 3677332 ENCODE Processing Pipeline e9ab0d44d833f3510b6f458d18196238 https://www.encodeproject.org/files/ENCFF289SRI/@@download/ENCFF289SRI.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002EUE fastq reads ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1286729897 Bing Ren, UCSD edd81acd70fffcd9842567a79d81fb43 SRA:SRR3651970 https://www.encodeproject.org/files/ENCFF002EUE/@@download/ENCFF002EUE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, control low read depth ENCFF002EUI fastq reads ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1289893834 Bing Ren, UCSD c8396080c67990b39dadc4b9aefe69a8 SRA:SRR3651969 https://www.encodeproject.org/files/ENCFF002EUI/@@download/ENCFF002EUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXQ/ released low read length, control low read depth ENCFF853ASF bam alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUE, ENCFF806TVZ 1128712878 ENCODE Processing Pipeline a5370404c50a61f89c6fe85b3192577e https://www.encodeproject.org/files/ENCFF853ASF/@@download/ENCFF853ASF.bam mm10-minimal archived low read length, control low read depth ENCFF375XXJ bam alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUI, ENCFF806TVZ 1137222186 ENCODE Processing Pipeline 284b6f123b2e46cfd647a50fda269915 https://www.encodeproject.org/files/ENCFF375XXJ/@@download/ENCFF375XXJ.bam mm10-minimal archived low read length, control low read depth ENCFF129NFD bigWig signal p-value ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF375XXJ, ENCFF731DCA, ENCFF853ASF 534287188 ENCODE Processing Pipeline ff01ad2263d2e0e76ef6f9bc39b7c517 https://www.encodeproject.org/files/ENCFF129NFD/@@download/ENCFF129NFD.bigWig mm10-minimal archived low read length, control low read depth ENCFF349FOG bed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF731DCA, ENCFF853ASF 1201640 ENCODE Processing Pipeline 0e1c91dc2f06656293e48c27af17afcb https://www.encodeproject.org/files/ENCFF349FOG/@@download/ENCFF349FOG.bed.gz mm10-minimal archived low read length, control low read depth ENCFF924MRI bigBed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF174WCL 3874198 ENCODE Processing Pipeline 18e40f2e9da9219de562fe4ebe439034 https://www.encodeproject.org/files/ENCFF924MRI/@@download/ENCFF924MRI.bigBed mm10-minimal archived low read length, control low read depth ENCFF174WCL bed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF375XXJ, ENCFF731DCA 1322944 ENCODE Processing Pipeline 773bd2cc6d029efc33cf489b6b66e286 https://www.encodeproject.org/files/ENCFF174WCL/@@download/ENCFF174WCL.bed.gz mm10-minimal archived low read length, control low read depth ENCFF835CVX bed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF375XXJ, ENCFF731DCA, ENCFF853ASF 1053982 ENCODE Processing Pipeline 4b056c5692fc885889e84afd77c45f0f https://www.encodeproject.org/files/ENCFF835CVX/@@download/ENCFF835CVX.bed.gz mm10-minimal archived low read length, control low read depth ENCFF569NJA bigBed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF349FOG 3565627 ENCODE Processing Pipeline b3658d01f418634f9ae3d75ec74bcf2c https://www.encodeproject.org/files/ENCFF569NJA/@@download/ENCFF569NJA.bigBed mm10-minimal archived low read length, control low read depth ENCFF547ZHT bigBed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF835CVX 3107806 ENCODE Processing Pipeline 58c349dd065e407e168d74f5f6846802 https://www.encodeproject.org/files/ENCFF547ZHT/@@download/ENCFF547ZHT.bigBed mm10-minimal archived low read length, control low read depth ENCFF109VND bigWig signal p-value ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF375XXJ, ENCFF731DCA 507533250 ENCODE Processing Pipeline cce9576740954d6b22de51876537f18f https://www.encodeproject.org/files/ENCFF109VND/@@download/ENCFF109VND.bigWig mm10-minimal archived low read length, control low read depth ENCFF667RSD bigWig signal p-value ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF731DCA, ENCFF853ASF 520167499 ENCODE Processing Pipeline 50ca08e8428ab80209ca7ffc3b9728dc https://www.encodeproject.org/files/ENCFF667RSD/@@download/ENCFF667RSD.bigWig mm10-minimal archived low read length, control low read depth ENCFF812IAH bigWig fold change over control ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF731DCA, ENCFF853ASF 475552400 ENCODE Processing Pipeline 4e3f863bb0531f5880ba47917195b784 https://www.encodeproject.org/files/ENCFF812IAH/@@download/ENCFF812IAH.bigWig mm10-minimal archived low read length, control low read depth ENCFF277JKF bigWig fold change over control ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF375XXJ, ENCFF731DCA 476953219 ENCODE Processing Pipeline c64e7e0c0bdaf3b595ef8509019c60ec https://www.encodeproject.org/files/ENCFF277JKF/@@download/ENCFF277JKF.bigWig mm10-minimal archived low read length, control low read depth ENCFF214CSH bigWig fold change over control ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF375XXJ, ENCFF731DCA, ENCFF853ASF 759918173 ENCODE Processing Pipeline 1331e5eb96815ba713bc1e61d9735e23 https://www.encodeproject.org/files/ENCFF214CSH/@@download/ENCFF214CSH.bigWig mm10-minimal archived low read length, control low read depth ENCFF821IQG bigBed narrowPeak replicated peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF535DUE 2745535 ENCODE Processing Pipeline 25e6c353cdc6b704fac3ced8c5c6a515 https://www.encodeproject.org/files/ENCFF821IQG/@@download/ENCFF821IQG.bigBed mm10-minimal archived low read length, control low read depth ENCFF535DUE bed narrowPeak replicated peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF174WCL, ENCFF349FOG, ENCFF835CVX 1257384 ENCODE Processing Pipeline 5f799c5eb7fd8f4cad7a3126097d694a https://www.encodeproject.org/files/ENCFF535DUE/@@download/ENCFF535DUE.bed.gz mm10-minimal archived low read length, control low read depth ENCFF429BQC bam alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUI, ENCFF018NEO 1137047489 ENCODE Processing Pipeline 36c69508d436a93cc024560859b7e72a https://www.encodeproject.org/files/ENCFF429BQC/@@download/ENCFF429BQC.bam mm10 released low read length, control low read depth ENCFF848ANR bam unfiltered alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUI, ENCFF018NEO 1614347387 ENCODE Processing Pipeline c8221315f459c12e5c93218d1303d9ec https://www.encodeproject.org/files/ENCFF848ANR/@@download/ENCFF848ANR.bam mm10 released low read length, control low read depth ENCFF123IUN bam unfiltered alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUE, ENCFF018NEO 1614527379 ENCODE Processing Pipeline fd417e7c4b54c76f5074283456551268 https://www.encodeproject.org/files/ENCFF123IUN/@@download/ENCFF123IUN.bam mm10 released low read length, control low read depth ENCFF074EHQ bam alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUE, ENCFF018NEO 1128529987 ENCODE Processing Pipeline 691d62795af6926502653947cff2a94e https://www.encodeproject.org/files/ENCFF074EHQ/@@download/ENCFF074EHQ.bam mm10 released low read length, control low read depth ENCFF726OZW bed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF074EHQ, ENCFF276TCT, ENCFF461JUO 1202676 ENCODE Processing Pipeline 8341d282232af4910da76e0aaf7f788d https://www.encodeproject.org/files/ENCFF726OZW/@@download/ENCFF726OZW.bed.gz mm10 released low read length, control low read depth ENCFF938CGP bed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF429BQC 699816 ENCODE Processing Pipeline 6f564ec50a335efe6eb81c63b1eb6fa5 https://www.encodeproject.org/files/ENCFF938CGP/@@download/ENCFF938CGP.bed.gz mm10 released low read length, control low read depth ENCFF416BEX bigBed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF938CGP 2203868 ENCODE Processing Pipeline 3a452bd3ab3eb1fb76f4d696586f3cf1 https://www.encodeproject.org/files/ENCFF416BEX/@@download/ENCFF416BEX.bigBed mm10 released low read length, control low read depth ENCFF741WIA bed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF074EHQ, ENCFF276TCT, ENCFF429BQC, ENCFF461JUO 1052083 ENCODE Processing Pipeline ca169df44682cb0180b701bd5d4d4e7b https://www.encodeproject.org/files/ENCFF741WIA/@@download/ENCFF741WIA.bed.gz mm10 released low read length, control low read depth ENCFF244IRH bigBed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF741WIA 3101114 ENCODE Processing Pipeline 8c77f26c248211a0bbdd2601758dcfa2 https://www.encodeproject.org/files/ENCFF244IRH/@@download/ENCFF244IRH.bigBed mm10 released low read length, control low read depth ENCFF275HHK bigBed narrowPeak peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF726OZW 3567754 ENCODE Processing Pipeline ecf4278b7cb3a57543e777fb642e5799 https://www.encodeproject.org/files/ENCFF275HHK/@@download/ENCFF275HHK.bigBed mm10 released low read length, control low read depth ENCFF290ZQH bigWig signal p-value ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF074EHQ, ENCFF276TCT, ENCFF461JUO 423882059 ENCODE Processing Pipeline 5a19613d64802533484b7308524c26d2 https://www.encodeproject.org/files/ENCFF290ZQH/@@download/ENCFF290ZQH.bigWig mm10 released low read length, control low read depth ENCFF559ZSM bigWig signal p-value ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF429BQC 234076724 ENCODE Processing Pipeline 50bbfbf88dcd64b3674527ecd87f3d27 https://www.encodeproject.org/files/ENCFF559ZSM/@@download/ENCFF559ZSM.bigWig mm10 released low read length, control low read depth ENCFF616WFM bigWig signal p-value ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF074EHQ, ENCFF276TCT, ENCFF429BQC, ENCFF461JUO 532289201 ENCODE Processing Pipeline b20c84b1b5baacd45906213a8d575e37 https://www.encodeproject.org/files/ENCFF616WFM/@@download/ENCFF616WFM.bigWig mm10 released low read length, control low read depth ENCFF508ZIK bigWig fold change over control ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF074EHQ, ENCFF276TCT, ENCFF461JUO 475427819 ENCODE Processing Pipeline 26a72d7f0ac3cc706932d95df456624a https://www.encodeproject.org/files/ENCFF508ZIK/@@download/ENCFF508ZIK.bigWig mm10 released low read length, control low read depth ENCFF335ENV bigWig fold change over control ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF429BQC 370984346 ENCODE Processing Pipeline 49cd24105830222e8339b5584093a8a9 https://www.encodeproject.org/files/ENCFF335ENV/@@download/ENCFF335ENV.bigWig mm10 released low read length, control low read depth ENCFF440SVM bigWig fold change over control ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF074EHQ, ENCFF276TCT, ENCFF429BQC, ENCFF461JUO 759701095 ENCODE Processing Pipeline 2acba089f4b4838002d8e0d6c9f66335 https://www.encodeproject.org/files/ENCFF440SVM/@@download/ENCFF440SVM.bigWig mm10 released low read length, control low read depth ENCFF939LBG bigBed narrowPeak replicated peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF179PHX 2560509 ENCODE Processing Pipeline bef29745e7f60b3f8d2b1ff9b2ea61f1 https://www.encodeproject.org/files/ENCFF939LBG/@@download/ENCFF939LBG.bigBed mm10 released low read length, control low read depth ENCFF179PHX bed narrowPeak replicated peaks ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF726OZW, ENCFF741WIA, ENCFF938CGP 1164117 ENCODE Processing Pipeline 724a5406fe7c8f0c79723d69102ee7df https://www.encodeproject.org/files/ENCFF179PHX/@@download/ENCFF179PHX.bed.gz mm10 released low read length, control low read depth ENCFF001KHZ bigBed broadPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXJ 1000083 Bing Ren, UCSD 7e1bb3e4107252cd5d85fcae73ecf315 https://www.encodeproject.org/files/ENCFF001KHZ/@@download/ENCFF001KHZ.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KIB bigWig signal ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KIC, ENCFF001KIF 75074337 Bing Ren, UCSD fe712d425cded6a30105eb4cdf9b8275 https://www.encodeproject.org/files/ENCFF001KIB/@@download/ENCFF001KIB.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KIC bam alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KIK 1067534385 Bing Ren, UCSD 88bac740627ca35ae76f63b8ecee743f https://www.encodeproject.org/files/ENCFF001KIC/@@download/ENCFF001KIC.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KIF bam alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KIR 1749392613 Bing Ren, UCSD a3814c0023269fc64829e2d0a2790f6b https://www.encodeproject.org/files/ENCFF001KIF/@@download/ENCFF001KIF.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KIK fastq reads ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 1039715454 Bing Ren, UCSD a9855168ac05139bfec393284fe18464 https://www.encodeproject.org/files/ENCFF001KIK/@@download/ENCFF001KIK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KIR fastq reads ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 50 single-ended 1736310159 Bing Ren, UCSD 29c2ef5f56d1c3a255874b8b2026e6fc https://www.encodeproject.org/files/ENCFF001KIR/@@download/ENCFF001KIR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIL/ released mild to moderate bottlenecking, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity insufficient read depth, control insufficient read depth ENCFF001XXJ bed broadPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KIC, ENCFF001KIF 587832 Bing Ren, UCSD 42bcf120ea473f19233a4821cd10e097 https://www.encodeproject.org/files/ENCFF001XXJ/@@download/ENCFF001XXJ.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF331ZKX bam unfiltered alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KIK, ENCFF018NEO 1155887601 ENCODE Processing Pipeline 11fe53f120f225cc94c5086fce0a56d9 https://www.encodeproject.org/files/ENCFF331ZKX/@@download/ENCFF331ZKX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF446JLJ bam alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KIK, ENCFF018NEO 671611195 ENCODE Processing Pipeline 1ccf4f772d8ef3b47c6744f436508704 https://www.encodeproject.org/files/ENCFF446JLJ/@@download/ENCFF446JLJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF663QLW bed narrowPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF446JLJ, ENCFF465PJQ 1594944 ENCODE Processing Pipeline 71dac8761c314d4bb5d7257318558000 https://www.encodeproject.org/files/ENCFF663QLW/@@download/ENCFF663QLW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF165WUC bigBed narrowPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF663QLW 3875664 ENCODE Processing Pipeline 1417b4b3cf25b41a9a7ed537f6e7c758 https://www.encodeproject.org/files/ENCFF165WUC/@@download/ENCFF165WUC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF808IHD bigWig signal p-value ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF446JLJ, ENCFF465PJQ 364738243 ENCODE Processing Pipeline 616e5540c0f60d9d8d2fec610e0313ed https://www.encodeproject.org/files/ENCFF808IHD/@@download/ENCFF808IHD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF281QAT bigWig fold change over control ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF446JLJ, ENCFF465PJQ 310868971 ENCODE Processing Pipeline fc4d6c65b72dd9c002ae94abbe6314c5 https://www.encodeproject.org/files/ENCFF281QAT/@@download/ENCFF281QAT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF003TVE bam unfiltered alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIR, ENCFF018NEO 1526523458 ENCODE Processing Pipeline c2f2acae12174b395e05334524cdf41e https://www.encodeproject.org/files/ENCFF003TVE/@@download/ENCFF003TVE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF406QUP bam alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIR, ENCFF018NEO 1004064996 ENCODE Processing Pipeline 6679af51a1e1ec0a24b452f71579f98f https://www.encodeproject.org/files/ENCFF406QUP/@@download/ENCFF406QUP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF329EAW bed narrowPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF406QUP, ENCFF465PJQ 807218 ENCODE Processing Pipeline 96e95e614369b81beb70aca994f71c9d https://www.encodeproject.org/files/ENCFF329EAW/@@download/ENCFF329EAW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF113JMX bigBed narrowPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF302BPN 1897075 ENCODE Processing Pipeline f7030a4dc2af506424dcd921fc2d2166 https://www.encodeproject.org/files/ENCFF113JMX/@@download/ENCFF113JMX.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF302BPN bed narrowPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF406QUP, ENCFF446JLJ, ENCFF465PJQ 786752 ENCODE Processing Pipeline ccdceeb0f45b2cc556548d415e191011 https://www.encodeproject.org/files/ENCFF302BPN/@@download/ENCFF302BPN.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF751GLE bigBed narrowPeak replicated peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF206SZJ 1380637 ENCODE Processing Pipeline 5b2c60d6383591ea7ed580554affb62d https://www.encodeproject.org/files/ENCFF751GLE/@@download/ENCFF751GLE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF441DCJ bigBed narrowPeak peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF329EAW 2006689 ENCODE Processing Pipeline fd565ba8799f5d76c0f7e4d5b36a5c7a https://www.encodeproject.org/files/ENCFF441DCJ/@@download/ENCFF441DCJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF561IAB bigWig signal p-value ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF406QUP, ENCFF465PJQ 402509255 ENCODE Processing Pipeline fc68baca2c0fefe72af827876e5fca72 https://www.encodeproject.org/files/ENCFF561IAB/@@download/ENCFF561IAB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF098ZBQ bigWig fold change over control ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF406QUP, ENCFF465PJQ 424251284 ENCODE Processing Pipeline ed01859f71a8f3a8fab4b3d7bff948a7 https://www.encodeproject.org/files/ENCFF098ZBQ/@@download/ENCFF098ZBQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF042INO bigWig fold change over control ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF406QUP, ENCFF446JLJ, ENCFF465PJQ 605208585 ENCODE Processing Pipeline 2bdcc186682c6afbb42ed857387fa660 https://www.encodeproject.org/files/ENCFF042INO/@@download/ENCFF042INO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF206SZJ bed narrowPeak replicated peaks ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF302BPN, ENCFF329EAW, ENCFF663QLW 657994 ENCODE Processing Pipeline e07e53c92f128a49a4ace7d1a335b6b7 https://www.encodeproject.org/files/ENCFF206SZJ/@@download/ENCFF206SZJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF586YVH bigWig signal p-value ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF406QUP, ENCFF446JLJ, ENCFF465PJQ 388380734 ENCODE Processing Pipeline 7236d5e7b6ad249d6851eae79774a4c3 https://www.encodeproject.org/files/ENCFF586YVH/@@download/ENCFF586YVH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001NGB bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NGE 405620721 Michael Snyder, Stanford 011f2fc5cef25e4d3f41d5e9a1973e2d https://www.encodeproject.org/files/ENCFF001NGB/@@download/ENCFF001NGB.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NGD bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHW 3884553 Michael Snyder, Stanford d2041b4278f93aa1b0d9d1ecfcb6ad62 https://www.encodeproject.org/files/ENCFF001NGD/@@download/ENCFF001NGD.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NGE fastq reads ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 804002258 Michael Snyder, Stanford 272ab82012b2eb959a176cfce71c108d https://www.encodeproject.org/files/ENCFF001NGE/@@download/ENCFF001NGE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NGG fastq reads ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 858847445 Michael Snyder, Stanford d35ff42974e72d764fc99ccf2755359e https://www.encodeproject.org/files/ENCFF001NGG/@@download/ENCFF001NGG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NGI bigWig signal ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGB, ENCFF001NGJ 303666172 Michael Snyder, Stanford bccc5b2f53b7022bf9e3b85fd85b135b https://www.encodeproject.org/files/ENCFF001NGI/@@download/ENCFF001NGI.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NGJ bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NGG 412790445 Michael Snyder, Stanford 82a6a5667f1f4aebce1a248dcf935b52 https://www.encodeproject.org/files/ENCFF001NGJ/@@download/ENCFF001NGJ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001YHW bed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGB, ENCFF001NGJ 1538306 Michael Snyder, Stanford 0fd36ea125257b6e698325d97cb3e2e1 https://www.encodeproject.org/files/ENCFF001YHW/@@download/ENCFF001YHW.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF286DUD bam unfiltered alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 836449151 ENCODE Processing Pipeline 2e25339ab90ad1e2949b0a6afcaa037a https://www.encodeproject.org/files/ENCFF286DUD/@@download/ENCFF286DUD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF292PNZ bam unfiltered alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 870081064 ENCODE Processing Pipeline 4e4ee63d6041c48664ec88590d5e913a https://www.encodeproject.org/files/ENCFF292PNZ/@@download/ENCFF292PNZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF131PLT bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 562408943 ENCODE Processing Pipeline dbd4fedfe0f411370eede0734eae9e51 https://www.encodeproject.org/files/ENCFF131PLT/@@download/ENCFF131PLT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF449KFK bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 565439135 ENCODE Processing Pipeline 7c11067724dcab9ca6209c59cae0ac52 https://www.encodeproject.org/files/ENCFF449KFK/@@download/ENCFF449KFK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF189YQN bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 231337681 ENCODE Processing Pipeline ed3164d5970faac679961e66ac0fa19d https://www.encodeproject.org/files/ENCFF189YQN/@@download/ENCFF189YQN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF456ZQW bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 232144935 ENCODE Processing Pipeline 3f24ce3f641b27fb8686f5b6f739afb1 https://www.encodeproject.org/files/ENCFF456ZQW/@@download/ENCFF456ZQW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF696AUE bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 215391653 ENCODE Processing Pipeline 670b46875facc1d6477b5883a113e1dd https://www.encodeproject.org/files/ENCFF696AUE/@@download/ENCFF696AUE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF641JPY bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 240285666 ENCODE Processing Pipeline a6cd0070734d27c2923e7d44b7939bf5 https://www.encodeproject.org/files/ENCFF641JPY/@@download/ENCFF641JPY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF504YYO bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 237586020 ENCODE Processing Pipeline 2b180adb4bf324bb43df0a249ebddad8 https://www.encodeproject.org/files/ENCFF504YYO/@@download/ENCFF504YYO.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF021GBR bed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 3001862 ENCODE Processing Pipeline bfbe6cd57cd7f2924b1db8657a77e831 https://www.encodeproject.org/files/ENCFF021GBR/@@download/ENCFF021GBR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF025UEN bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 406550892 ENCODE Processing Pipeline 22c79636d1422b70effc0084a724c17a https://www.encodeproject.org/files/ENCFF025UEN/@@download/ENCFF025UEN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF892SBI bed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 4650878 ENCODE Processing Pipeline 30bfb8a28dc5b4b72832c74c09ea15aa https://www.encodeproject.org/files/ENCFF892SBI/@@download/ENCFF892SBI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF720ZXB bed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 4675280 ENCODE Processing Pipeline 1ebcc4d2149810c9bf57d2c44a1fc569 https://www.encodeproject.org/files/ENCFF720ZXB/@@download/ENCFF720ZXB.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF860CJT bigBed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF892SBI 10403895 ENCODE Processing Pipeline 19673f9c8465418ca6ca29d68eb29fe8 https://www.encodeproject.org/files/ENCFF860CJT/@@download/ENCFF860CJT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF408BFU bigBed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF720ZXB 10489720 ENCODE Processing Pipeline 33e1ac5b76742399f37d6e6273307656 https://www.encodeproject.org/files/ENCFF408BFU/@@download/ENCFF408BFU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF242HXC bigBed narrowPeak peaks and background as input for IDR ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR 5940737 ENCODE Processing Pipeline 3a28cae7ac8907e3a5cecfd09ae80dcf https://www.encodeproject.org/files/ENCFF242HXC/@@download/ENCFF242HXC.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF504KIJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF612IQZ 2031741 ENCODE Processing Pipeline 17f3d7401153b03af2d2692bde6bf73d https://www.encodeproject.org/files/ENCFF504KIJ/@@download/ENCFF504KIJ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF739OMJ bed narrowPeak optimal idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR, ENCFF547MET, ENCFF720ZXB, ENCFF892SBI 1030359 ENCODE Processing Pipeline e9525ea80812e160b7f33e45dfeed555 https://www.encodeproject.org/files/ENCFF739OMJ/@@download/ENCFF739OMJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF612IQZ bed narrowPeak conservative idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR, ENCFF547MET, ENCFF720ZXB, ENCFF892SBI 994390 ENCODE Processing Pipeline de6877ce8114d7870c1fc44f643329f5 https://www.encodeproject.org/files/ENCFF612IQZ/@@download/ENCFF612IQZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF461IQT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF739OMJ 2086109 ENCODE Processing Pipeline 5442bbab2b38cc2a43e34e555267263a https://www.encodeproject.org/files/ENCFF461IQT/@@download/ENCFF461IQT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF461FOJ bam alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF520DGC, ENCFF777PMC, ENCFF806TVZ 2936837180 ENCODE Processing Pipeline 184572f6d3b7114e772ef9ee2d70c52c https://www.encodeproject.org/files/ENCFF461FOJ/@@download/ENCFF461FOJ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF152DDY bam alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF261ILD, ENCFF806TVZ, ENCFF973JMH 2807073818 ENCODE Processing Pipeline 28580b8ed2ecccb81dd9dd09d920d366 https://www.encodeproject.org/files/ENCFF152DDY/@@download/ENCFF152DDY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF973JMH fastq reads ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3042159894 Bing Ren, UCSD 1f0b0893e7c5df6483fee6b64ed9ee88 SRA:SRR3652907 https://www.encodeproject.org/files/ENCFF973JMH/@@download/ENCFF973JMH.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF261ILD fastq reads ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 278941152 Bing Ren, UCSD f3d029a76ed508e9109edf5ed4f28f6c SRA:SRR3652908 https://www.encodeproject.org/files/ENCFF261ILD/@@download/ENCFF261ILD.fastq.gz Illumina HiSeq 2500 /files/ENCFF246LOG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF520DGC fastq reads ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2340009987 Bing Ren, UCSD 193adb194571d4ef115e884019bf2d4f SRA:SRR3652909 https://www.encodeproject.org/files/ENCFF520DGC/@@download/ENCFF520DGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF777PMC fastq reads ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 1399635205 Bing Ren, UCSD f569fa11b84ec2427f4e0dbd1dd4dec2 SRA:SRR3652910 https://www.encodeproject.org/files/ENCFF777PMC/@@download/ENCFF777PMC.fastq.gz Illumina HiSeq 2500 /files/ENCFF515ALU/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF253SDG bed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF269MZC, ENCFF461FOJ 2304204 ENCODE Processing Pipeline 971a162c67344f4e91714ab5dfeb2307 https://www.encodeproject.org/files/ENCFF253SDG/@@download/ENCFF253SDG.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF357VNP bed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 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https://www.encodeproject.org/files/ENCFF201JEN/@@download/ENCFF201JEN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF878UZU bigWig signal p-value ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF152DDY, ENCFF170XAR, ENCFF269MZC 976379004 ENCODE Processing Pipeline 771e82d61d1b020adeef7a30310e5f18 https://www.encodeproject.org/files/ENCFF878UZU/@@download/ENCFF878UZU.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF682CVQ bigWig signal p-value ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF269MZC, ENCFF461FOJ 815416447 ENCODE Processing Pipeline f09dead4d620bf96d0daf804a7a5288a https://www.encodeproject.org/files/ENCFF682CVQ/@@download/ENCFF682CVQ.bigWig mm10-minimal 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sequencing runs labeled as technical replicates ENCFF922VNG bigWig fold change over control ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF269MZC, ENCFF461FOJ 997849078 ENCODE Processing Pipeline 9d110aca7835a3941d3cbcf148dee24e https://www.encodeproject.org/files/ENCFF922VNG/@@download/ENCFF922VNG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF277DRS bigWig fold change over control ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF152DDY, ENCFF170XAR, ENCFF269MZC, ENCFF461FOJ 1508846644 ENCODE Processing Pipeline ed05be13ab5884188b76fd87a88991c0 https://www.encodeproject.org/files/ENCFF277DRS/@@download/ENCFF277DRS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF960BLT bed narrowPeak replicated peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF253SDG, ENCFF357VNP, ENCFF938OBG 1334720 ENCODE Processing Pipeline 8eff7e0ec32c68c2796c879becc3fa89 https://www.encodeproject.org/files/ENCFF960BLT/@@download/ENCFF960BLT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF957XJP bigBed narrowPeak replicated peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF960BLT 2820346 ENCODE Processing Pipeline 15b487f780fe7b5b279ce7999956e87f https://www.encodeproject.org/files/ENCFF957XJP/@@download/ENCFF957XJP.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF360AKT bam unfiltered alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF520DGC, ENCFF777PMC 4371474315 ENCODE Processing Pipeline 27f1b2b3bb6667e3e4dd1a6a9cb9bdaf https://www.encodeproject.org/files/ENCFF360AKT/@@download/ENCFF360AKT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF947RZC bam unfiltered alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF261ILD, ENCFF973JMH 3952601726 ENCODE Processing Pipeline 0de6747557e1fb65db17bcacde938bf4 https://www.encodeproject.org/files/ENCFF947RZC/@@download/ENCFF947RZC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF100CRL bam alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF261ILD, ENCFF973JMH 2806578336 ENCODE Processing Pipeline 4aad161c66ab990acc5c8c63f74604ee https://www.encodeproject.org/files/ENCFF100CRL/@@download/ENCFF100CRL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF915PPM bam alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF520DGC, ENCFF777PMC 2936293520 ENCODE Processing Pipeline 965b6d24cd9c466f18b580d92e20999b https://www.encodeproject.org/files/ENCFF915PPM/@@download/ENCFF915PPM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF968CIX bed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF100CRL, ENCFF200JPL, ENCFF876QJH 1768978 ENCODE Processing Pipeline 716f06fa92b7afbef54b8979348e7edc https://www.encodeproject.org/files/ENCFF968CIX/@@download/ENCFF968CIX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF552YGO bed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF915PPM 1276641 ENCODE Processing Pipeline 7e70c1497cf712d87bb422bba53c63e8 https://www.encodeproject.org/files/ENCFF552YGO/@@download/ENCFF552YGO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF281FXP bed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF100CRL, ENCFF200JPL, ENCFF876QJH, ENCFF915PPM 2474780 ENCODE Processing Pipeline c3b3427e1c9bda3886810ce15d2bebed https://www.encodeproject.org/files/ENCFF281FXP/@@download/ENCFF281FXP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF796WIO bigBed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF968CIX 3537657 ENCODE Processing Pipeline 05da4ae8534761392fa118df085549b4 https://www.encodeproject.org/files/ENCFF796WIO/@@download/ENCFF796WIO.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF956VVT bigBed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF552YGO 2486044 ENCODE Processing Pipeline 6e799c47153eefcd53ffa92045de6fa2 https://www.encodeproject.org/files/ENCFF956VVT/@@download/ENCFF956VVT.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF067VXW bigBed narrowPeak peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF281FXP 4642083 ENCODE Processing Pipeline fd67973ba058f9e20d9aa3a08c08604f https://www.encodeproject.org/files/ENCFF067VXW/@@download/ENCFF067VXW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF406HXV bigWig signal p-value ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF100CRL, ENCFF200JPL, ENCFF876QJH 782673825 ENCODE Processing Pipeline 6d9c29d0cf82466eb173ae7ccf753b5f https://www.encodeproject.org/files/ENCFF406HXV/@@download/ENCFF406HXV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF361XWE bigWig signal p-value ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF915PPM 800953999 ENCODE Processing Pipeline 17b3f74c2bc300d74b30b38f69bdf462 https://www.encodeproject.org/files/ENCFF361XWE/@@download/ENCFF361XWE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF408LOI bigWig signal p-value ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF100CRL, ENCFF200JPL, ENCFF876QJH, ENCFF915PPM 1507458919 ENCODE Processing Pipeline c16a3f5ef1f345d13541241a9c5d24ab https://www.encodeproject.org/files/ENCFF408LOI/@@download/ENCFF408LOI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF999ZLK bigWig fold change over control ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF100CRL, ENCFF200JPL, ENCFF876QJH 1057861463 ENCODE Processing Pipeline 0e4c887f772180942f3d97376f1de4be https://www.encodeproject.org/files/ENCFF999ZLK/@@download/ENCFF999ZLK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF879BKR bigWig fold change over control ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF915PPM 893668369 ENCODE Processing Pipeline c98ff306178700e5bebcd65f318ad750 https://www.encodeproject.org/files/ENCFF879BKR/@@download/ENCFF879BKR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF779RNO bigWig fold change over control ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF100CRL, ENCFF200JPL, ENCFF876QJH, ENCFF915PPM 1587273206 ENCODE Processing Pipeline 2c67f6a7060750d7dfaf493305268a8a https://www.encodeproject.org/files/ENCFF779RNO/@@download/ENCFF779RNO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF718DIQ bed narrowPeak replicated peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF281FXP, ENCFF552YGO, ENCFF968CIX 1246102 ENCODE Processing Pipeline 839469880bf3d15cd25d738d17197d27 https://www.encodeproject.org/files/ENCFF718DIQ/@@download/ENCFF718DIQ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF335ALU bigBed narrowPeak replicated peaks ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF718DIQ 2583723 ENCODE Processing Pipeline 4e8f5746360bb36f73fe309ccadf2be0 https://www.encodeproject.org/files/ENCFF335ALU/@@download/ENCFF335ALU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF152MDB fastq reads ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 2729865340 Bing Ren, UCSD fd4cb1d63cb96661050fda864ae50656 SRA:SRR3651386 https://www.encodeproject.org/files/ENCFF152MDB/@@download/ENCFF152MDB.fastq.gz Illumina HiSeq 2500 /files/ENCFF393EAJ/ released inconsistent platforms ENCFF237DIP fastq reads ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 2164773637 Bing Ren, UCSD 00e47adf7cedc443f74a26c7613f8028 SRA:SRR3651385 https://www.encodeproject.org/files/ENCFF237DIP/@@download/ENCFF237DIP.fastq.gz Illumina HiSeq 2500 /files/ENCFF545UQA/ released inconsistent platforms ENCFF574ENE bam alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF152MDB, ENCFF806TVZ 1365752720 ENCODE Processing Pipeline 12e26d25e7802869f0893c94648b6cb8 https://www.encodeproject.org/files/ENCFF574ENE/@@download/ENCFF574ENE.bam mm10-minimal archived inconsistent platforms ENCFF851WIE bam alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF237DIP, ENCFF806TVZ 1069326905 ENCODE Processing Pipeline 0ed58c408a8aeee2ce5bce12031fbc7a https://www.encodeproject.org/files/ENCFF851WIE/@@download/ENCFF851WIE.bam mm10-minimal archived inconsistent platforms ENCFF832EGT bed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF627MYB, ENCFF851WIE 1038470 ENCODE Processing Pipeline fab419f31ec032043c63308f1d4283c8 https://www.encodeproject.org/files/ENCFF832EGT/@@download/ENCFF832EGT.bed.gz mm10-minimal archived inconsistent platforms ENCFF170JSI bed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF371GCA, ENCFF574ENE 1104328 ENCODE Processing Pipeline e83945a4579b497ca7ac7c04d52ab5b8 https://www.encodeproject.org/files/ENCFF170JSI/@@download/ENCFF170JSI.bed.gz mm10-minimal archived inconsistent platforms ENCFF261WBD bed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF371GCA, ENCFF574ENE, ENCFF627MYB, ENCFF851WIE 1919754 ENCODE Processing Pipeline 7eed5b15be891ea5bdd3ded0a3570d75 https://www.encodeproject.org/files/ENCFF261WBD/@@download/ENCFF261WBD.bed.gz mm10-minimal archived inconsistent platforms ENCFF769TME bigBed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF832EGT 2153539 ENCODE Processing Pipeline 8bc5c12b8b312d0fbe8511531668d4e1 https://www.encodeproject.org/files/ENCFF769TME/@@download/ENCFF769TME.bigBed mm10-minimal archived inconsistent platforms ENCFF598GXP bigBed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF170JSI 2274224 ENCODE Processing Pipeline 5447c80d055e294582b09ffc118e420a https://www.encodeproject.org/files/ENCFF598GXP/@@download/ENCFF598GXP.bigBed mm10-minimal archived inconsistent platforms ENCFF554ZDF bigBed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF261WBD 4510937 ENCODE Processing Pipeline 5f69b063110482f7d0ec2910ac411228 https://www.encodeproject.org/files/ENCFF554ZDF/@@download/ENCFF554ZDF.bigBed mm10-minimal archived inconsistent platforms ENCFF183NZJ bigWig signal p-value ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF627MYB, ENCFF851WIE 406524600 ENCODE Processing Pipeline 70b4a220c00f11c848cc088507b340fc https://www.encodeproject.org/files/ENCFF183NZJ/@@download/ENCFF183NZJ.bigWig mm10-minimal archived inconsistent platforms ENCFF300UGC bigWig signal p-value ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF371GCA, ENCFF574ENE, ENCFF627MYB, ENCFF851WIE 787502542 ENCODE Processing Pipeline cadde01a8083c035014d49ff6678e5ec https://www.encodeproject.org/files/ENCFF300UGC/@@download/ENCFF300UGC.bigWig mm10-minimal archived inconsistent platforms ENCFF809CFE bigWig signal p-value ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF371GCA, ENCFF574ENE 443693675 ENCODE Processing Pipeline b2dc63de9bcebdb8e1f378e9b9b5384e https://www.encodeproject.org/files/ENCFF809CFE/@@download/ENCFF809CFE.bigWig mm10-minimal archived inconsistent platforms ENCFF987BAZ bigWig fold change over control ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF627MYB, ENCFF851WIE 403839276 ENCODE Processing Pipeline 6b970948b8722c602c47dc99a49111b1 https://www.encodeproject.org/files/ENCFF987BAZ/@@download/ENCFF987BAZ.bigWig mm10-minimal archived inconsistent platforms ENCFF380AKQ bigWig fold change over control ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF371GCA, ENCFF574ENE 527766079 ENCODE Processing Pipeline d48dd71ea27a31874205d88588a1aaab https://www.encodeproject.org/files/ENCFF380AKQ/@@download/ENCFF380AKQ.bigWig mm10-minimal archived inconsistent platforms ENCFF292ODK bigWig fold change over control ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF371GCA, ENCFF574ENE, ENCFF627MYB, ENCFF851WIE 903871415 ENCODE Processing Pipeline 3368a81ba4476c10f7461b1ecf6cf1d8 https://www.encodeproject.org/files/ENCFF292ODK/@@download/ENCFF292ODK.bigWig mm10-minimal archived inconsistent platforms ENCFF152RLB bed narrowPeak replicated peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF170JSI, ENCFF261WBD, ENCFF832EGT 750617 ENCODE Processing Pipeline 0931d9f257abec1294777bc0b7823694 https://www.encodeproject.org/files/ENCFF152RLB/@@download/ENCFF152RLB.bed.gz mm10-minimal archived inconsistent platforms ENCFF196SXF bigBed narrowPeak replicated peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF152RLB 1397905 ENCODE Processing Pipeline e62f023cf209d654ed97e64c4c56702e https://www.encodeproject.org/files/ENCFF196SXF/@@download/ENCFF196SXF.bigBed mm10-minimal archived inconsistent platforms ENCFF391XRK bam unfiltered alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF152MDB 3308664523 ENCODE Processing Pipeline d258ba7c2486f7c718f2cb78c57b5acd https://www.encodeproject.org/files/ENCFF391XRK/@@download/ENCFF391XRK.bam mm10 released inconsistent platforms ENCFF944BEA bam unfiltered alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF237DIP 2633779869 ENCODE Processing Pipeline 3a24c6bb8063ec90de56735f8a295fc0 https://www.encodeproject.org/files/ENCFF944BEA/@@download/ENCFF944BEA.bam mm10 released inconsistent platforms ENCFF673LAV bam alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF237DIP 1068623243 ENCODE Processing Pipeline aad9acd96b8feaf523171a1f799111fb https://www.encodeproject.org/files/ENCFF673LAV/@@download/ENCFF673LAV.bam mm10 released inconsistent platforms ENCFF291OCV bam alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF152MDB 1365049055 ENCODE Processing Pipeline f22b64f2d203db87498335ad02f5243b https://www.encodeproject.org/files/ENCFF291OCV/@@download/ENCFF291OCV.bam mm10 released inconsistent platforms ENCFF422NIB bed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF673LAV, ENCFF884PDZ 1083902 ENCODE Processing Pipeline f6f4885638e8ed74ffce4d4e8ee22d7e https://www.encodeproject.org/files/ENCFF422NIB/@@download/ENCFF422NIB.bed.gz mm10 released inconsistent platforms ENCFF241DZR bed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF060JKD, ENCFF291OCV 1150794 ENCODE Processing Pipeline 64c140e497f7fe24121c8b0cf6315bd7 https://www.encodeproject.org/files/ENCFF241DZR/@@download/ENCFF241DZR.bed.gz mm10 released inconsistent platforms ENCFF214IRR bigBed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF422NIB 2234232 ENCODE Processing Pipeline f1d354a4f0900a4f0b3de3df392ada43 https://www.encodeproject.org/files/ENCFF214IRR/@@download/ENCFF214IRR.bigBed mm10 released inconsistent platforms ENCFF096ASH bed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF060JKD, ENCFF291OCV, ENCFF673LAV, ENCFF884PDZ 1871354 ENCODE Processing Pipeline 6040c96b144eff6df192ef47fb225c5f https://www.encodeproject.org/files/ENCFF096ASH/@@download/ENCFF096ASH.bed.gz mm10 released inconsistent platforms ENCFF052EWF bigBed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF241DZR 2349041 ENCODE Processing Pipeline b87ca11fba716e421676eb4db63e4319 https://www.encodeproject.org/files/ENCFF052EWF/@@download/ENCFF052EWF.bigBed mm10 released inconsistent platforms ENCFF199WCV bigBed narrowPeak peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF096ASH 4404559 ENCODE Processing Pipeline a33598da3e79b20f31b8d6993f612a78 https://www.encodeproject.org/files/ENCFF199WCV/@@download/ENCFF199WCV.bigBed mm10 released inconsistent platforms ENCFF762VZK bigWig signal p-value ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF673LAV, ENCFF884PDZ 515514944 ENCODE Processing Pipeline bb2f02d2ad350fe456d442a3bc216d81 https://www.encodeproject.org/files/ENCFF762VZK/@@download/ENCFF762VZK.bigWig mm10 released inconsistent platforms ENCFF532PEB bigWig signal p-value ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF060JKD, ENCFF291OCV 459931167 ENCODE Processing Pipeline 4dc2d1531199299c2ee7bba86fd4275e https://www.encodeproject.org/files/ENCFF532PEB/@@download/ENCFF532PEB.bigWig mm10 released inconsistent platforms ENCFF965GTQ bigWig signal p-value ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF060JKD, ENCFF291OCV, ENCFF673LAV, ENCFF884PDZ 862009926 ENCODE Processing Pipeline b4b3408eb90ff625673b668054ba3240 https://www.encodeproject.org/files/ENCFF965GTQ/@@download/ENCFF965GTQ.bigWig mm10 released inconsistent platforms ENCFF363MIV bigWig fold change over control ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF673LAV, ENCFF884PDZ 464808910 ENCODE Processing Pipeline 8650932e464389260d7a2f6ae690616a https://www.encodeproject.org/files/ENCFF363MIV/@@download/ENCFF363MIV.bigWig mm10 released inconsistent platforms ENCFF585QFA bigWig fold change over control ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF060JKD, ENCFF291OCV 528192046 ENCODE Processing Pipeline 2bb7b28ca943b72b375195d453d1e493 https://www.encodeproject.org/files/ENCFF585QFA/@@download/ENCFF585QFA.bigWig mm10 released inconsistent platforms ENCFF637INN bigWig fold change over control ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF060JKD, ENCFF291OCV, ENCFF673LAV, ENCFF884PDZ 924552778 ENCODE Processing Pipeline e6ed9ed685e1a3ec1f1e1753c7262403 https://www.encodeproject.org/files/ENCFF637INN/@@download/ENCFF637INN.bigWig mm10 released inconsistent platforms ENCFF798HTO bed narrowPeak replicated peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF096ASH, ENCFF241DZR, ENCFF422NIB 777552 ENCODE Processing Pipeline 484ecdb2d3badbd87a54506d2429b39f https://www.encodeproject.org/files/ENCFF798HTO/@@download/ENCFF798HTO.bed.gz mm10 released inconsistent platforms ENCFF652ABB bigBed narrowPeak replicated peaks ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF798HTO 1445263 ENCODE Processing Pipeline bf483a36419315487a1604d47f3d238c https://www.encodeproject.org/files/ENCFF652ABB/@@download/ENCFF652ABB.bigBed mm10 released inconsistent platforms ENCFF001MPR bam alignments ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQR 1843549690 Ross Hardison, PennState e8f29055d088afc72b991e4758e0abe4 https://www.encodeproject.org/files/ENCFF001MPR/@@download/ENCFF001MPR.bam mm9 released low read length, inconsistent platforms ENCFF001MQK bigBed broadPeak peaks ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFO 297087 Ross Hardison, PennState 66b385d7fda0702674cf376c89780703 https://www.encodeproject.org/files/ENCFF001MQK/@@download/ENCFF001MQK.bigBed mm9 released low read length, inconsistent platforms ENCFF001MQM bigWig signal ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4586347966 Ross Hardison, PennState 7d8d41017e2d7868a2af83435bdc93a9 https://www.encodeproject.org/files/ENCFF001MQM/@@download/ENCFF001MQM.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MQR fastq reads ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1472002883 Ross Hardison, PennState f8f115092c5f367f9261389344989732 https://www.encodeproject.org/files/ENCFF001MQR/@@download/ENCFF001MQR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MRP/ released low read length, inconsistent platforms, inconsistent control read length ENCFF001YFO bed broadPeak peaks ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 143573 Ross Hardison, PennState e297d618ea71a8258a62d08acfb9d0d8 https://www.encodeproject.org/files/ENCFF001YFO/@@download/ENCFF001YFO.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF705AKL bam unfiltered alignments ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQR, ENCFF018NEO 1933074702 ENCODE Processing Pipeline f9dbe4e7b635044ecc12deb97d3afb95 https://www.encodeproject.org/files/ENCFF705AKL/@@download/ENCFF705AKL.bam mm10 released low read length, inconsistent platforms ENCFF145AOI bam alignments ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQR, ENCFF018NEO 1360581536 ENCODE Processing Pipeline 1903b1ffa1304578f62c8a4086cba780 https://www.encodeproject.org/files/ENCFF145AOI/@@download/ENCFF145AOI.bam mm10 released low read length, inconsistent platforms ENCFF518TYD fastq reads ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1015197817 Bing Ren, UCSD df11e09cedf6acbce411d726e82e6540 SRA:SRR3651288 https://www.encodeproject.org/files/ENCFF518TYD/@@download/ENCFF518TYD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released mixed read lengths, low read length, low read depth ENCFF058DIN fastq reads ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 969333618 Bing Ren, UCSD 273c6afa416aa327c16b68533755abc6 SRA:SRR3651289 https://www.encodeproject.org/files/ENCFF058DIN/@@download/ENCFF058DIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released mixed read lengths, low read length, low read depth ENCFF229OPV bam alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF058DIN, ENCFF806TVZ 921582781 ENCODE Processing Pipeline 1359da5bf276b5139e7c86925469ea1d https://www.encodeproject.org/files/ENCFF229OPV/@@download/ENCFF229OPV.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF941MDX bam alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF518TYD, ENCFF806TVZ 927876023 ENCODE Processing Pipeline 4369c60522c4e65f0f861501c56f1572 https://www.encodeproject.org/files/ENCFF941MDX/@@download/ENCFF941MDX.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF143WMH bigBed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141SUA 2791654 ENCODE Processing Pipeline e8014cd3cc668748ee20804d237b31ac https://www.encodeproject.org/files/ENCFF143WMH/@@download/ENCFF143WMH.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF069IGL bigBed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF536ITG 3044681 ENCODE Processing Pipeline 8876ab34a69dfc80c8967504f047a741 https://www.encodeproject.org/files/ENCFF069IGL/@@download/ENCFF069IGL.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF021DNJ bigWig signal p-value ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF941MDX 416490813 ENCODE Processing Pipeline 742e65abf30baec101c18a6d87049c2d https://www.encodeproject.org/files/ENCFF021DNJ/@@download/ENCFF021DNJ.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF690FUO bed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF941MDX 1214339 ENCODE Processing Pipeline 4a911c6d3006c8bd9367a273d2ab387a https://www.encodeproject.org/files/ENCFF690FUO/@@download/ENCFF690FUO.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF141SUA bed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF229OPV, ENCFF439PVF, ENCFF578PIN 1123106 ENCODE Processing Pipeline 455cad8f44990621efedebbd5a1cf52d https://www.encodeproject.org/files/ENCFF141SUA/@@download/ENCFF141SUA.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF536ITG bed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF229OPV, ENCFF439PVF, ENCFF578PIN, ENCFF941MDX 985826 ENCODE Processing Pipeline 44b3e3378c37a59b7fb1ba1385cfae22 https://www.encodeproject.org/files/ENCFF536ITG/@@download/ENCFF536ITG.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF985LOW bigBed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF690FUO 3760005 ENCODE Processing Pipeline 090edc63e373f6704cd79a7ede15d9a4 https://www.encodeproject.org/files/ENCFF985LOW/@@download/ENCFF985LOW.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF696KVD bigWig signal p-value ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF229OPV, ENCFF439PVF, ENCFF578PIN 410687185 ENCODE Processing Pipeline 925a7b33188ebe46ba10c42d33b85676 https://www.encodeproject.org/files/ENCFF696KVD/@@download/ENCFF696KVD.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF045FRC bigWig signal p-value ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF229OPV, ENCFF439PVF, ENCFF578PIN, ENCFF941MDX 600361528 ENCODE Processing Pipeline 428eb441bcc4c0e33948608ca3a815a6 https://www.encodeproject.org/files/ENCFF045FRC/@@download/ENCFF045FRC.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF912CSU bigWig fold change over control ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF941MDX 431402356 ENCODE Processing Pipeline 1973621cf69284d6a4c30b98b77a1e1a https://www.encodeproject.org/files/ENCFF912CSU/@@download/ENCFF912CSU.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF285EVY bigWig fold change over control ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF229OPV, ENCFF439PVF, ENCFF578PIN 412769778 ENCODE Processing Pipeline d7e535de5c8cdab1ef5aa1ae47b8d809 https://www.encodeproject.org/files/ENCFF285EVY/@@download/ENCFF285EVY.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF770SYI bigWig fold change over control ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF229OPV, ENCFF439PVF, ENCFF578PIN, ENCFF941MDX 671215950 ENCODE Processing Pipeline 7f477b23efa175830b206b0be80630a5 https://www.encodeproject.org/files/ENCFF770SYI/@@download/ENCFF770SYI.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF343RHB bigBed narrowPeak replicated peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF476LGD 2349727 ENCODE Processing Pipeline a9e6008bc9f5bc0987356fb432c4824b https://www.encodeproject.org/files/ENCFF343RHB/@@download/ENCFF343RHB.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF476LGD bed narrowPeak replicated peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141SUA, ENCFF536ITG, ENCFF690FUO 1000993 ENCODE Processing Pipeline af4e8653724855484d6611a4ab4468af https://www.encodeproject.org/files/ENCFF476LGD/@@download/ENCFF476LGD.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF384OWZ bam unfiltered alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF518TYD 1282216914 ENCODE Processing Pipeline 1dfc8845bf798cf25871d55ec068a09a https://www.encodeproject.org/files/ENCFF384OWZ/@@download/ENCFF384OWZ.bam mm10 released mixed read lengths, low read length, low read depth ENCFF267PKP bam alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF518TYD 927729537 ENCODE Processing Pipeline aa4930a8c569d3542f062be7941aa436 https://www.encodeproject.org/files/ENCFF267PKP/@@download/ENCFF267PKP.bam mm10 released mixed read lengths, low read length, low read depth ENCFF860RXR bam unfiltered alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF058DIN 984115507 ENCODE Processing Pipeline f43272629eabdfbf4a976289fcf968cf https://www.encodeproject.org/files/ENCFF860RXR/@@download/ENCFF860RXR.bam mm10 released mixed read lengths, low read length, low read depth ENCFF785EVA bam alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF058DIN 724645449 ENCODE Processing Pipeline ffd11a6af960d7f6c25d092da61f1826 https://www.encodeproject.org/files/ENCFF785EVA/@@download/ENCFF785EVA.bam mm10 released mixed read lengths, low read length, low read depth ENCFF371DWY bed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF267PKP, ENCFF397HOQ, ENCFF749WCS, ENCFF785EVA 1077381 ENCODE Processing Pipeline 37fe7f78a24d88902cb4329a246cb9c4 https://www.encodeproject.org/files/ENCFF371DWY/@@download/ENCFF371DWY.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF850QJD bigBed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF343NSQ 3469268 ENCODE Processing Pipeline 1932ac629308c5eb1a6aca55f20ff53a https://www.encodeproject.org/files/ENCFF850QJD/@@download/ENCFF850QJD.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF343NSQ bed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF785EVA 1122719 ENCODE Processing Pipeline 679b20be003eac053018bab4b74c136c https://www.encodeproject.org/files/ENCFF343NSQ/@@download/ENCFF343NSQ.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF764YHZ bigBed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF371DWY 3308138 ENCODE Processing Pipeline c894fc9b2650c85e034a86725493e6eb https://www.encodeproject.org/files/ENCFF764YHZ/@@download/ENCFF764YHZ.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF381LHG bed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF267PKP, ENCFF397HOQ, ENCFF749WCS 1201273 ENCODE Processing Pipeline 4f1ab586711d057103f8c9f910dfd499 https://www.encodeproject.org/files/ENCFF381LHG/@@download/ENCFF381LHG.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF230YGR bigWig signal p-value ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF785EVA 384580871 ENCODE Processing Pipeline f441c788db3d7de4e149b3ff10742c97 https://www.encodeproject.org/files/ENCFF230YGR/@@download/ENCFF230YGR.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF019ZRC bigWig signal p-value ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF267PKP, ENCFF397HOQ, ENCFF749WCS, ENCFF785EVA 597097271 ENCODE Processing Pipeline 9649652996dab3a6d31bd21a65625774 https://www.encodeproject.org/files/ENCFF019ZRC/@@download/ENCFF019ZRC.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF816KWK bigBed narrowPeak peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF381LHG 3724826 ENCODE Processing Pipeline 6b840a04cc6345958fd44c9068796fc6 https://www.encodeproject.org/files/ENCFF816KWK/@@download/ENCFF816KWK.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF106LIQ bigWig signal p-value ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF267PKP, ENCFF397HOQ, ENCFF749WCS 389180289 ENCODE Processing Pipeline 3ed9889ea9e47b29729fe6e80991bed4 https://www.encodeproject.org/files/ENCFF106LIQ/@@download/ENCFF106LIQ.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF746JJV bigWig fold change over control ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF785EVA 401328119 ENCODE Processing Pipeline 6178e2c25b3c9c5c79d74e1bf3c1729e https://www.encodeproject.org/files/ENCFF746JJV/@@download/ENCFF746JJV.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF436XBX bigWig fold change over control ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF267PKP, ENCFF397HOQ, ENCFF749WCS 431441222 ENCODE Processing Pipeline 3f4e87921e8a801faba40dada83ba45d https://www.encodeproject.org/files/ENCFF436XBX/@@download/ENCFF436XBX.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF565CYY bigWig fold change over control ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF267PKP, ENCFF397HOQ, ENCFF749WCS, ENCFF785EVA 653026561 ENCODE Processing Pipeline fee62fa695620b1eaa24f9fec3539867 https://www.encodeproject.org/files/ENCFF565CYY/@@download/ENCFF565CYY.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF612WDA bigBed narrowPeak replicated peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF033SQD 2381033 ENCODE Processing Pipeline 0c7a42d5f47d9e9bcf3ae41a4faf394a https://www.encodeproject.org/files/ENCFF612WDA/@@download/ENCFF612WDA.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF033SQD bed narrowPeak replicated peaks ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF343NSQ, ENCFF371DWY, ENCFF381LHG 1016454 ENCODE Processing Pipeline 5bc6d4df625921656b0fe8326aae87bd https://www.encodeproject.org/files/ENCFF033SQD/@@download/ENCFF033SQD.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF001MEA bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MEQ 5112026638 Ross Hardison, PennState 6485f4168e06bedfb99d26344234aa83 https://www.encodeproject.org/files/ENCFF001MEA/@@download/ENCFF001MEA.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEC bigBed broadPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDY 4803319 Ross Hardison, PennState 088cbf60f8e96051f7e4e9fa746b4a8c https://www.encodeproject.org/files/ENCFF001MEC/@@download/ENCFF001MEC.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MED bigBed broadPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDZ 3816841 Ross Hardison, PennState 762ff77ee16f5b40ec797f3f06d29225 https://www.encodeproject.org/files/ENCFF001MED/@@download/ENCFF001MED.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEE bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MES 5220709426 Ross Hardison, PennState c4ec08e866b210bd59216a7463067071 https://www.encodeproject.org/files/ENCFF001MEE/@@download/ENCFF001MEE.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEF bigBed broadPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YEA 4200969 Ross Hardison, PennState b52ad47e3f614da9aaa52a22b3097524 https://www.encodeproject.org/files/ENCFF001MEF/@@download/ENCFF001MEF.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEG bigWig signal ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5665201938 Ross Hardison, PennState acdbe5f4b0d9096b790b8ea4cf4be732 https://www.encodeproject.org/files/ENCFF001MEG/@@download/ENCFF001MEG.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MEH bigWig signal ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5614760210 Ross Hardison, PennState d0d807d32da01b7cf37488b0971c9ce8 https://www.encodeproject.org/files/ENCFF001MEH/@@download/ENCFF001MEH.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MEI bigWig signal ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 6333251401 Ross Hardison, PennState 18b831c524be022a02eee9567d7876b3 https://www.encodeproject.org/files/ENCFF001MEI/@@download/ENCFF001MEI.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MEQ fastq reads ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4535080871 Ross Hardison, PennState 83b53c358b002959fa4d1dc418716654 https://www.encodeproject.org/files/ENCFF001MEQ/@@download/ENCFF001MEQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUT/ released inconsistent platforms, inconsistent control read length biological replicates with identical biosample ENCFF001MES fastq reads ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4628058581 Ross Hardison, PennState 482b429f5ef6ea16313ca5275d5a1a34 https://www.encodeproject.org/files/ENCFF001MES/@@download/ENCFF001MES.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released inconsistent platforms biological replicates with identical biosample ENCFF001YDY bed broadPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2202912 Ross Hardison, PennState 3c21fe7c4c6623aa80e114cbfca3cb59 https://www.encodeproject.org/files/ENCFF001YDY/@@download/ENCFF001YDY.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDZ bed broadPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1572452 Ross Hardison, PennState cb06367abfe9a5bcfa1cf673618aa38b https://www.encodeproject.org/files/ENCFF001YDZ/@@download/ENCFF001YDZ.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YEA bed broadPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1708460 Ross Hardison, PennState 0239535eab6225e239d8eb9df7f60ae9 https://www.encodeproject.org/files/ENCFF001YEA/@@download/ENCFF001YEA.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF526ASS bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MEQ, ENCFF806TVZ 3113141176 ENCODE Processing Pipeline 131168297288d37f7606f0093bb07609 https://www.encodeproject.org/files/ENCFF526ASS/@@download/ENCFF526ASS.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF377ILZ bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MES, ENCFF806TVZ 3203181972 ENCODE Processing Pipeline b56bd0a9d7a886b42f2b2afe9eb4d599 https://www.encodeproject.org/files/ENCFF377ILZ/@@download/ENCFF377ILZ.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF068BZA bam unfiltered alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MES, ENCFF018NEO 4601747701 ENCODE Processing Pipeline f0af1135cd58871635dc0d802ae9266a https://www.encodeproject.org/files/ENCFF068BZA/@@download/ENCFF068BZA.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF463COA bam unfiltered alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MEQ, ENCFF018NEO 4512590410 ENCODE Processing Pipeline 26aef0baa98d9cd4b3271cf4ed98aa84 https://www.encodeproject.org/files/ENCFF463COA/@@download/ENCFF463COA.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF544PDT bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MEQ, ENCFF018NEO 2510463538 ENCODE Processing Pipeline cfbb8875003c8fbfe825f40b5139d29e https://www.encodeproject.org/files/ENCFF544PDT/@@download/ENCFF544PDT.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF630KQK bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MES, ENCFF018NEO 2549215458 ENCODE Processing Pipeline e8bdcca2130f17bfa16833e163d154c9 https://www.encodeproject.org/files/ENCFF630KQK/@@download/ENCFF630KQK.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF782BIN bed narrowPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF544PDT, ENCFF769SND, ENCFF887RWQ 4255792 ENCODE Processing Pipeline 144992567a27e8567ff8f39bd72fb4c2 https://www.encodeproject.org/files/ENCFF782BIN/@@download/ENCFF782BIN.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF510WGS bigBed narrowPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF143CYX 9528381 ENCODE Processing Pipeline 199b62aef48f2c171234b559edd9af24 https://www.encodeproject.org/files/ENCFF510WGS/@@download/ENCFF510WGS.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF143CYX bed narrowPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF630KQK, ENCFF769SND, ENCFF887RWQ 4508031 ENCODE Processing Pipeline ad6e97a55e9671df8361158d0454f2b7 https://www.encodeproject.org/files/ENCFF143CYX/@@download/ENCFF143CYX.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF055VYB bed narrowPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF544PDT, ENCFF630KQK, ENCFF769SND, ENCFF887RWQ 5853379 ENCODE Processing Pipeline 2d136b01de5b35eeb920adb19e4035df https://www.encodeproject.org/files/ENCFF055VYB/@@download/ENCFF055VYB.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF477GBP bigBed narrowPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF782BIN 9093098 ENCODE Processing Pipeline 8323cc373f82d970705da98124d8e8e6 https://www.encodeproject.org/files/ENCFF477GBP/@@download/ENCFF477GBP.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF006NIV bigBed narrowPeak peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF055VYB 15791620 ENCODE Processing Pipeline 9c63ca1120f220f725302e21934ade90 https://www.encodeproject.org/files/ENCFF006NIV/@@download/ENCFF006NIV.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF210GWI bigWig signal p-value ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF544PDT, ENCFF769SND, ENCFF887RWQ 1256833181 ENCODE Processing Pipeline b045ec726e58f8dd7506fd3a375afc50 https://www.encodeproject.org/files/ENCFF210GWI/@@download/ENCFF210GWI.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF082GLF bigWig signal p-value ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF630KQK, ENCFF769SND, ENCFF887RWQ 964806113 ENCODE Processing Pipeline e24d9937de7d78b9c3fcb6a3518c324f https://www.encodeproject.org/files/ENCFF082GLF/@@download/ENCFF082GLF.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF505ESY bigWig signal p-value ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF544PDT, ENCFF630KQK, ENCFF769SND, ENCFF887RWQ 1324294290 ENCODE Processing Pipeline 785b1d733f16e1966c3a239c3f2c6c45 https://www.encodeproject.org/files/ENCFF505ESY/@@download/ENCFF505ESY.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF950IFW bigWig fold change over control ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF544PDT, ENCFF769SND, ENCFF887RWQ 1156138982 ENCODE Processing Pipeline 761d2a84baebd19ef624623d9851d7cf https://www.encodeproject.org/files/ENCFF950IFW/@@download/ENCFF950IFW.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF018QWW bigWig fold change over control ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF630KQK, ENCFF769SND, ENCFF887RWQ 1180934452 ENCODE Processing Pipeline 54df4ac39873196dff617563ff4d3130 https://www.encodeproject.org/files/ENCFF018QWW/@@download/ENCFF018QWW.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF851DGO bigWig fold change over control ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF544PDT, ENCFF630KQK, ENCFF769SND, ENCFF887RWQ 1724227449 ENCODE Processing Pipeline 93516bacf5d1c0105be46a51e2db38ff https://www.encodeproject.org/files/ENCFF851DGO/@@download/ENCFF851DGO.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF704ESJ bed narrowPeak replicated peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF055VYB, ENCFF143CYX, ENCFF782BIN 4138615 ENCODE Processing Pipeline 9433a3f6ec1f35298f4d5c54d5e138a1 https://www.encodeproject.org/files/ENCFF704ESJ/@@download/ENCFF704ESJ.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF611FTU bigBed narrowPeak replicated peaks ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF704ESJ 8910142 ENCODE Processing Pipeline a76aa634ef6fe179fa556c8fbb986f67 https://www.encodeproject.org/files/ENCFF611FTU/@@download/ENCFF611FTU.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF002ETO fastq reads ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 1625586291 Bing Ren, UCSD 210377d153c72c0e21b9b3e8e202f489 SRA:SRR3652187 https://www.encodeproject.org/files/ENCFF002ETO/@@download/ENCFF002ETO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXQ/ released inconsistent control read length insufficient read depth, control insufficient read depth ENCFF002ETR fastq reads ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 50 single-ended 2105864073 Bing Ren, UCSD 837def8afe13dc424c4f691de8ce7dac SRA:SRR3652186 https://www.encodeproject.org/files/ENCFF002ETR/@@download/ENCFF002ETR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released inconsistent control read length insufficient read depth, control insufficient read depth ENCFF409LVM bam alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETO, ENCFF806TVZ 1251160751 ENCODE Processing Pipeline 7d6527cc525e69b01d8cca3a785f79aa https://www.encodeproject.org/files/ENCFF409LVM/@@download/ENCFF409LVM.bam mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF208CFX bam alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETR, ENCFF806TVZ 1600403167 ENCODE Processing Pipeline b7e4c2c62114755ece22ce6566ae5c3e https://www.encodeproject.org/files/ENCFF208CFX/@@download/ENCFF208CFX.bam mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF712EUH bigBed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153VCN 5048746 ENCODE Processing Pipeline 4ea06b6d12013675ca2f54de126ec931 https://www.encodeproject.org/files/ENCFF712EUH/@@download/ENCFF712EUH.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF340CNM bed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF208CFX, ENCFF731DCA 2406145 ENCODE Processing Pipeline bb9195e5945ae46ebb4198ed6c3baf11 https://www.encodeproject.org/files/ENCFF340CNM/@@download/ENCFF340CNM.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF153VCN bed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF208CFX, ENCFF409LVM, ENCFF731DCA 2151734 ENCODE Processing Pipeline d7d12f9de035af1a6320c08d44af1f2a https://www.encodeproject.org/files/ENCFF153VCN/@@download/ENCFF153VCN.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF378ANV bigBed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF347BJP 6092103 ENCODE Processing Pipeline 9956b50e43a4354158f1dd348e0dca22 https://www.encodeproject.org/files/ENCFF378ANV/@@download/ENCFF378ANV.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF347BJP bed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF409LVM, ENCFF731DCA 2511878 ENCODE Processing Pipeline 858ebf87be4d7f628c1aee01b602ff41 https://www.encodeproject.org/files/ENCFF347BJP/@@download/ENCFF347BJP.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF307YDW bigBed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF340CNM 5729478 ENCODE Processing Pipeline aede909640ca249a5c3a5343380334e5 https://www.encodeproject.org/files/ENCFF307YDW/@@download/ENCFF307YDW.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF389FAM bigWig signal p-value ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF208CFX, ENCFF731DCA 535376128 ENCODE Processing Pipeline f36efed9ef521bb1eec9d123139bed56 https://www.encodeproject.org/files/ENCFF389FAM/@@download/ENCFF389FAM.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF761RCN bigWig signal p-value ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF409LVM, ENCFF731DCA 440306497 ENCODE Processing Pipeline e99082f75454a4d16ea2ef6c58248d04 https://www.encodeproject.org/files/ENCFF761RCN/@@download/ENCFF761RCN.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF978HAJ bigWig signal p-value ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF208CFX, ENCFF409LVM, ENCFF731DCA 540889232 ENCODE Processing Pipeline 1dce5f6484454b1f41ec86766ccdd0d2 https://www.encodeproject.org/files/ENCFF978HAJ/@@download/ENCFF978HAJ.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF525LVA bigWig fold change over control ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF208CFX, ENCFF731DCA 520361969 ENCODE Processing Pipeline 4eafc293c900c304e1fc9baa83d7c8c6 https://www.encodeproject.org/files/ENCFF525LVA/@@download/ENCFF525LVA.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF749VSQ bigWig fold change over control ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF208CFX, ENCFF409LVM, ENCFF731DCA 783863787 ENCODE Processing Pipeline 60f7bc660ffc2b17e3516da946267cab https://www.encodeproject.org/files/ENCFF749VSQ/@@download/ENCFF749VSQ.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF243QDV bigWig fold change over control ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF409LVM, ENCFF731DCA 444124467 ENCODE Processing Pipeline b5649a410979952fd0687602f15e513d https://www.encodeproject.org/files/ENCFF243QDV/@@download/ENCFF243QDV.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF693MFP bed narrowPeak replicated peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153VCN, ENCFF340CNM, ENCFF347BJP 2279942 ENCODE Processing Pipeline 4b0db8f2f0ad2b87eb96d4659577e63e https://www.encodeproject.org/files/ENCFF693MFP/@@download/ENCFF693MFP.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF280DVD bigBed narrowPeak replicated peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF693MFP 4312203 ENCODE Processing Pipeline 4c0f97fb2e5f64881deddb4be22c0fdc https://www.encodeproject.org/files/ENCFF280DVD/@@download/ENCFF280DVD.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF505IBL bam unfiltered alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETR, ENCFF018NEO 2086375100 ENCODE Processing Pipeline 632399b8d58277902de348ec4ef337f6 https://www.encodeproject.org/files/ENCFF505IBL/@@download/ENCFF505IBL.bam mm10 released insufficient read depth, control insufficient read depth ENCFF513GMK bam alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETR, ENCFF018NEO 1178300049 ENCODE Processing Pipeline 35cab790a4c125f0c61ce73492464c91 https://www.encodeproject.org/files/ENCFF513GMK/@@download/ENCFF513GMK.bam mm10 released insufficient read depth, control insufficient read depth ENCFF324GJG bam unfiltered alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETO, ENCFF018NEO 1622547195 ENCODE Processing Pipeline de042d1c640b77b38ef2cea6b2b913b3 https://www.encodeproject.org/files/ENCFF324GJG/@@download/ENCFF324GJG.bam mm10 released insufficient read depth, control insufficient read depth ENCFF270SYW bam alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETO, ENCFF018NEO 920563191 ENCODE Processing Pipeline e1915ba41180c8a4af401b87567090a5 https://www.encodeproject.org/files/ENCFF270SYW/@@download/ENCFF270SYW.bam mm10 released insufficient read depth, control insufficient read depth ENCFF310UJZ bed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF513GMK 2810874 ENCODE Processing Pipeline 69ffdf8656425325e92de1850f44a702 https://www.encodeproject.org/files/ENCFF310UJZ/@@download/ENCFF310UJZ.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF444OKE bed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF270SYW, ENCFF276TCT, ENCFF461JUO, ENCFF513GMK 2242926 ENCODE Processing Pipeline 0657f47ccf535d17cef3affc02b17982 https://www.encodeproject.org/files/ENCFF444OKE/@@download/ENCFF444OKE.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF806EUT bed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF270SYW, ENCFF276TCT 1316991 ENCODE Processing Pipeline 5183e130a95fd99db9c960c516ec84d0 https://www.encodeproject.org/files/ENCFF806EUT/@@download/ENCFF806EUT.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF763XCT bigBed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF310UJZ 6607554 ENCODE Processing Pipeline 1707fb799cb980cb4d4e704fa880336a https://www.encodeproject.org/files/ENCFF763XCT/@@download/ENCFF763XCT.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF328NJB bigBed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF444OKE 5267131 ENCODE Processing Pipeline f3394c7f006bbb168b4ff35a3e98a57e https://www.encodeproject.org/files/ENCFF328NJB/@@download/ENCFF328NJB.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF089JHV bigBed narrowPeak peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF806EUT 2595738 ENCODE Processing Pipeline 0bca5400820e6fabd4dd17fd8d2f961f https://www.encodeproject.org/files/ENCFF089JHV/@@download/ENCFF089JHV.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF626HAE bigWig signal p-value ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF513GMK 439782390 ENCODE Processing Pipeline a2d4b048c6f83938953b3c7283b3aafb https://www.encodeproject.org/files/ENCFF626HAE/@@download/ENCFF626HAE.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF812NGY bigWig signal p-value ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF270SYW, ENCFF276TCT 252912214 ENCODE Processing Pipeline cdd4aad2c703d6caca3841d5224315c0 https://www.encodeproject.org/files/ENCFF812NGY/@@download/ENCFF812NGY.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF622EII bigWig signal p-value ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF270SYW, ENCFF276TCT, ENCFF461JUO, ENCFF513GMK 539710229 ENCODE Processing Pipeline 8243df50355aaee2de5f88a89373c40d https://www.encodeproject.org/files/ENCFF622EII/@@download/ENCFF622EII.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF346GDK bigWig fold change over control ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF513GMK 502793758 ENCODE Processing Pipeline ca893cd5039bfeabd5ba479573e7fc63 https://www.encodeproject.org/files/ENCFF346GDK/@@download/ENCFF346GDK.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF657IFT bigWig fold change over control ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF270SYW, ENCFF276TCT 315071715 ENCODE Processing Pipeline 92b2cc84fb0e2cf837d5b0d537bf2952 https://www.encodeproject.org/files/ENCFF657IFT/@@download/ENCFF657IFT.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF686TFW bigWig fold change over control ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF270SYW, ENCFF276TCT, ENCFF461JUO, ENCFF513GMK 744551377 ENCODE Processing Pipeline 89c32832500334be0a2fe0b7bc33da22 https://www.encodeproject.org/files/ENCFF686TFW/@@download/ENCFF686TFW.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF185DUB bed narrowPeak replicated peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF310UJZ, ENCFF444OKE, ENCFF806EUT 2236545 ENCODE Processing Pipeline d96314f3ebdbf284fc454fba54f589f9 https://www.encodeproject.org/files/ENCFF185DUB/@@download/ENCFF185DUB.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF310JEV bigBed narrowPeak replicated peaks ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF185DUB 4260318 ENCODE Processing Pipeline 785a8efd757495a19508e2c6310e328c https://www.encodeproject.org/files/ENCFF310JEV/@@download/ENCFF310JEV.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF002AGX fastq reads ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 992557065 Bing Ren, UCSD 5a9e447f063672befb253a8c9adca710 SRA:SRR3652000 https://www.encodeproject.org/files/ENCFF002AGX/@@download/ENCFF002AGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQZ/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AGZ fastq reads ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 653912152 Bing Ren, UCSD 8e6a5537d3d337768ebc01fa9a88dce1 SRA:SRR3651998 https://www.encodeproject.org/files/ENCFF002AGZ/@@download/ENCFF002AGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQV/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF489THL fastq reads ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 409053750 Bing Ren, UCSD 5c1dd04ea3b04a23a14ff06934f83c36 SRA:SRR3652001 https://www.encodeproject.org/files/ENCFF489THL/@@download/ENCFF489THL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQZ/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF562IJB fastq reads ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 849302266 Bing Ren, UCSD c9e6c8f2852141a73521ae41c40202c1 SRA:SRR3651999 https://www.encodeproject.org/files/ENCFF562IJB/@@download/ENCFF562IJB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQV/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF376WDR bam alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGZ, ENCFF562IJB, ENCFF806TVZ 1369787403 ENCODE Processing Pipeline 485a0a9dd455005e740f3e251ff9b4d6 https://www.encodeproject.org/files/ENCFF376WDR/@@download/ENCFF376WDR.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF508FKV bam alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGX, ENCFF489THL, ENCFF806TVZ 1209167739 ENCODE Processing Pipeline 586588b0913847517dd7c83d7ae99891 https://www.encodeproject.org/files/ENCFF508FKV/@@download/ENCFF508FKV.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF114RHD bigBed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF107JCW 1912679 ENCODE Processing Pipeline 4549ca0d067fe19b983ae4be69d6ad7a https://www.encodeproject.org/files/ENCFF114RHD/@@download/ENCFF114RHD.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF767CRZ bigWig signal p-value ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF508FKV 395390571 ENCODE Processing Pipeline 2444fe1fc0cca821727630aa0da63698 https://www.encodeproject.org/files/ENCFF767CRZ/@@download/ENCFF767CRZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF995KLJ bed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF238GCZ, ENCFF376WDR, ENCFF967HVB 743904 ENCODE Processing Pipeline c6319f9cb1d4e0bc89ba889263d5e995 https://www.encodeproject.org/files/ENCFF995KLJ/@@download/ENCFF995KLJ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF107JCW bed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF508FKV 838391 ENCODE Processing Pipeline 65c1e0096fbeda2ed4a18f6141bef544 https://www.encodeproject.org/files/ENCFF107JCW/@@download/ENCFF107JCW.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF024RRR bed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF238GCZ, ENCFF376WDR, ENCFF508FKV, ENCFF967HVB 957534 ENCODE Processing Pipeline 61ca5c693b091674087ae93225024c04 https://www.encodeproject.org/files/ENCFF024RRR/@@download/ENCFF024RRR.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF680MVY bigBed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF024RRR 2006980 ENCODE Processing Pipeline 0d86bd5599d5a012a661a877779b203c https://www.encodeproject.org/files/ENCFF680MVY/@@download/ENCFF680MVY.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF473SJI bigBed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF995KLJ 1642262 ENCODE Processing Pipeline d78f31fe981d1f4f0d7682da15bbe1b6 https://www.encodeproject.org/files/ENCFF473SJI/@@download/ENCFF473SJI.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF112ZYC bigWig signal p-value ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF238GCZ, ENCFF376WDR, ENCFF967HVB 633500558 ENCODE Processing Pipeline 8d065ef3e793579213cb341705ba2a9f https://www.encodeproject.org/files/ENCFF112ZYC/@@download/ENCFF112ZYC.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF595FEG bigWig signal p-value ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF238GCZ, ENCFF376WDR, ENCFF508FKV, ENCFF967HVB 877668414 ENCODE Processing Pipeline dea9813567c4a763139800c3e7a43e30 https://www.encodeproject.org/files/ENCFF595FEG/@@download/ENCFF595FEG.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF560YYB bigWig fold change over control ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF508FKV 487830192 ENCODE Processing Pipeline 5722ffa8095431e5c444f0bf82eeef3d https://www.encodeproject.org/files/ENCFF560YYB/@@download/ENCFF560YYB.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF722WNB bigWig fold change over control ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF238GCZ, ENCFF376WDR, ENCFF967HVB 591899215 ENCODE Processing Pipeline 6a517c1486cb6174a42e3461d259affa https://www.encodeproject.org/files/ENCFF722WNB/@@download/ENCFF722WNB.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF480PXG bigWig fold change over control ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF238GCZ, ENCFF376WDR, ENCFF508FKV, ENCFF967HVB 880457784 ENCODE Processing Pipeline 6c0a385fa26709823d2e96aa0bbf91a8 https://www.encodeproject.org/files/ENCFF480PXG/@@download/ENCFF480PXG.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF358FKM bed narrowPeak replicated peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF024RRR, ENCFF107JCW, ENCFF995KLJ 344861 ENCODE Processing Pipeline 8c23c872e722af962b2b1d0a7d9d2f91 https://www.encodeproject.org/files/ENCFF358FKM/@@download/ENCFF358FKM.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF345AEC bigBed narrowPeak replicated peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF358FKM 878598 ENCODE Processing Pipeline fd8f9cbf547b7dcb3ae814f4fe6ba520 https://www.encodeproject.org/files/ENCFF345AEC/@@download/ENCFF345AEC.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF104INR bam unfiltered alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGZ, ENCFF018NEO, ENCFF562IJB 1607974199 ENCODE Processing Pipeline b1c95126847d6d598f58cf94ac073cee https://www.encodeproject.org/files/ENCFF104INR/@@download/ENCFF104INR.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF832TIY bam unfiltered alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGX, ENCFF018NEO, ENCFF489THL 1540209026 ENCODE Processing Pipeline 42c4b0ae31d0d4d463091aeec4f75e9b https://www.encodeproject.org/files/ENCFF832TIY/@@download/ENCFF832TIY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF806TLD bam alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGZ, ENCFF018NEO, ENCFF562IJB 1156340999 ENCODE Processing Pipeline e56ea776a5250c21682ed8026262d14e https://www.encodeproject.org/files/ENCFF806TLD/@@download/ENCFF806TLD.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF266JUV bam alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGX, ENCFF018NEO, ENCFF489THL 1098148392 ENCODE Processing Pipeline 909f797b97bc616b73ecf36c509c9673 https://www.encodeproject.org/files/ENCFF266JUV/@@download/ENCFF266JUV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF952OHX bed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF266JUV, ENCFF507BQX, ENCFF858PPY 865856 ENCODE Processing Pipeline b2eeb9591f0c2f2762308f2d685dba90 https://www.encodeproject.org/files/ENCFF952OHX/@@download/ENCFF952OHX.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF947PEV bed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806TLD, ENCFF858PPY 412007 ENCODE Processing Pipeline a35619ab1109d4c856e219d08cc2b625 https://www.encodeproject.org/files/ENCFF947PEV/@@download/ENCFF947PEV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF728CIO bed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF266JUV, ENCFF507BQX, ENCFF806TLD, ENCFF858PPY 894115 ENCODE Processing Pipeline 57522d4ba8bcf893fd9af7ef39507e85 https://www.encodeproject.org/files/ENCFF728CIO/@@download/ENCFF728CIO.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF146PCA bigBed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF952OHX 1949789 ENCODE Processing Pipeline 09e180c4c34167fdd3f2c152fa5f1f9c https://www.encodeproject.org/files/ENCFF146PCA/@@download/ENCFF146PCA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF392GUU bigBed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF947PEV 919673 ENCODE Processing Pipeline 6fcc618da568d2deee58333ea5b6a997 https://www.encodeproject.org/files/ENCFF392GUU/@@download/ENCFF392GUU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF924ULZ bigBed narrowPeak peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF728CIO 1917844 ENCODE Processing Pipeline 71c9be59268ad8987e200309c7c613cb https://www.encodeproject.org/files/ENCFF924ULZ/@@download/ENCFF924ULZ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF239ULO bigWig signal p-value ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF266JUV, ENCFF507BQX, ENCFF858PPY 474409515 ENCODE Processing Pipeline 20fd9e0b8d8d10f3db01a937346794cc https://www.encodeproject.org/files/ENCFF239ULO/@@download/ENCFF239ULO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF534IVF bigWig signal p-value ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806TLD, ENCFF858PPY 457539781 ENCODE Processing Pipeline 01f50b6e2a0ec6b5e08afe5833371871 https://www.encodeproject.org/files/ENCFF534IVF/@@download/ENCFF534IVF.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF709XST bigWig signal p-value ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF266JUV, ENCFF507BQX, ENCFF806TLD, ENCFF858PPY 929784590 ENCODE Processing Pipeline c5e96668b4834758545a5ddac5d7e6b9 https://www.encodeproject.org/files/ENCFF709XST/@@download/ENCFF709XST.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF743HDK bigWig fold change over control ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF266JUV, ENCFF507BQX, ENCFF858PPY 568196819 ENCODE Processing Pipeline 684a94ff314fd6bb4946b6eebfe11388 https://www.encodeproject.org/files/ENCFF743HDK/@@download/ENCFF743HDK.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF782PJS bigWig fold change over control ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806TLD, ENCFF858PPY 466530810 ENCODE Processing Pipeline 856f7c8ab775560c6aa5c2846136be42 https://www.encodeproject.org/files/ENCFF782PJS/@@download/ENCFF782PJS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133XFD bigWig fold change over control ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF266JUV, ENCFF507BQX, ENCFF806TLD, ENCFF858PPY 927438808 ENCODE Processing Pipeline f559cbc66025f7b0267d9c6e8e518ffe https://www.encodeproject.org/files/ENCFF133XFD/@@download/ENCFF133XFD.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF228FIH bed narrowPeak replicated peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF728CIO, ENCFF947PEV, ENCFF952OHX 369767 ENCODE Processing Pipeline 55ad069e378a549e584721224132ab98 https://www.encodeproject.org/files/ENCFF228FIH/@@download/ENCFF228FIH.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF130PXZ bigBed narrowPeak replicated peaks ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF228FIH 924080 ENCODE Processing Pipeline c47d4e5d43add42dbc2cbf9641994be6 https://www.encodeproject.org/files/ENCFF130PXZ/@@download/ENCFF130PXZ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AIG fastq reads ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 945931538 Bing Ren, UCSD bd3c3b42038adc133927573f63c9bb6c SRA:SRR3651632 https://www.encodeproject.org/files/ENCFF002AIG/@@download/ENCFF002AIG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQS/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AII fastq reads ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 980152533 Bing Ren, UCSD 7d785d8f8c1630dba35885cb28800510 SRA:SRR3651630 https://www.encodeproject.org/files/ENCFF002AII/@@download/ENCFF002AII.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQU/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF077KSB fastq reads ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 628100193 Bing Ren, UCSD e641ababc565a31be4b7966f1cee47b6 SRA:SRR3651633 https://www.encodeproject.org/files/ENCFF077KSB/@@download/ENCFF077KSB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQS/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF919GKE fastq reads ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 713014510 Bing Ren, UCSD de7727449da952e26fa3a63596c926e2 SRA:SRR3651631 https://www.encodeproject.org/files/ENCFF919GKE/@@download/ENCFF919GKE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQU/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF342BPW bam alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AII, ENCFF806TVZ, ENCFF919GKE 1418457318 ENCODE Processing Pipeline 2bc3e701c06d34651661e4f17e05f3aa https://www.encodeproject.org/files/ENCFF342BPW/@@download/ENCFF342BPW.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF399QWR bam alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIG, ENCFF077KSB, ENCFF806TVZ 1333462285 ENCODE Processing Pipeline eea0097da6faec0a4d2476db7b824a48 https://www.encodeproject.org/files/ENCFF399QWR/@@download/ENCFF399QWR.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF161LCW bigBed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF502ZAE 6675454 ENCODE Processing Pipeline 6c8c7b094e7f28d836266afcac07a9c9 https://www.encodeproject.org/files/ENCFF161LCW/@@download/ENCFF161LCW.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF502ZAE bed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399QWR, ENCFF977HMC 2972173 ENCODE Processing Pipeline a440142aa6e00c3c83bb1f2aeec6f94e https://www.encodeproject.org/files/ENCFF502ZAE/@@download/ENCFF502ZAE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF274TVD bed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF342BPW, ENCFF399QWR, ENCFF720UVE, ENCFF977HMC 3063752 ENCODE Processing Pipeline ef8b0372e7c678daaa6881c91983792e https://www.encodeproject.org/files/ENCFF274TVD/@@download/ENCFF274TVD.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF379VGQ bigBed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF274TVD 6697053 ENCODE Processing Pipeline 85b3adafbe26db28b7dcd587efd0751b https://www.encodeproject.org/files/ENCFF379VGQ/@@download/ENCFF379VGQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF269XBZ bed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF342BPW, ENCFF720UVE 2636357 ENCODE Processing Pipeline 1620f2eb09340723c081b25f805d83c3 https://www.encodeproject.org/files/ENCFF269XBZ/@@download/ENCFF269XBZ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF933IGX bigBed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF269XBZ 5694659 ENCODE Processing Pipeline ce1eb5f138d68ea082da243c84ad5820 https://www.encodeproject.org/files/ENCFF933IGX/@@download/ENCFF933IGX.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF873CFY bigWig signal p-value ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399QWR, ENCFF977HMC 550430101 ENCODE Processing Pipeline 51ad2f2419cd6aef18805e404241b7a2 https://www.encodeproject.org/files/ENCFF873CFY/@@download/ENCFF873CFY.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF343SXY bigWig signal p-value ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF342BPW, ENCFF720UVE 455574638 ENCODE Processing Pipeline f23ccd8fc7290c0fe5005a88331e839d https://www.encodeproject.org/files/ENCFF343SXY/@@download/ENCFF343SXY.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF057UBZ bigWig signal p-value ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF342BPW, ENCFF399QWR, ENCFF720UVE, ENCFF977HMC 839592373 ENCODE Processing Pipeline b2fd876aab22ef519ba9060bcf290d00 https://www.encodeproject.org/files/ENCFF057UBZ/@@download/ENCFF057UBZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF282PVJ bigWig fold change over control ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399QWR, ENCFF977HMC 538961443 ENCODE Processing Pipeline f3e483873e2062d684b22ee01afbafac https://www.encodeproject.org/files/ENCFF282PVJ/@@download/ENCFF282PVJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF074XYX bigWig fold change over control ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF342BPW, ENCFF720UVE 503817943 ENCODE Processing Pipeline 6b3da223a65641c1efddf4d633de1492 https://www.encodeproject.org/files/ENCFF074XYX/@@download/ENCFF074XYX.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF174SHQ bigWig fold change over control ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF342BPW, ENCFF399QWR, ENCFF720UVE, ENCFF977HMC 1053872446 ENCODE Processing Pipeline 30c9ff6a774b3aa4c8d48845a2349af9 https://www.encodeproject.org/files/ENCFF174SHQ/@@download/ENCFF174SHQ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF615YQM bigBed narrowPeak replicated peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF586ICO 3896911 ENCODE Processing Pipeline c1559d572928cf4b3e4e86da545f8eec https://www.encodeproject.org/files/ENCFF615YQM/@@download/ENCFF615YQM.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF586ICO bed narrowPeak replicated peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF269XBZ, ENCFF274TVD, ENCFF502ZAE 2245012 ENCODE Processing Pipeline 4bf1f033e9385ae2d2b267469c400d2d https://www.encodeproject.org/files/ENCFF586ICO/@@download/ENCFF586ICO.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF080FSE bam unfiltered alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AII, ENCFF018NEO, ENCFF919GKE 1947983959 ENCODE Processing Pipeline 8934d891e67af39ba6f9b9b8de62beee https://www.encodeproject.org/files/ENCFF080FSE/@@download/ENCFF080FSE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF243GUM bam unfiltered alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIG, ENCFF018NEO, ENCFF077KSB 1811611214 ENCODE Processing Pipeline 0aaafa2949100888834528d138287195 https://www.encodeproject.org/files/ENCFF243GUM/@@download/ENCFF243GUM.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF312NPA bam alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIG, ENCFF018NEO, ENCFF077KSB 1196432927 ENCODE Processing Pipeline 93d332aa963789c39d2b7b2a7ce097d0 https://www.encodeproject.org/files/ENCFF312NPA/@@download/ENCFF312NPA.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF743VEF bam alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AII, ENCFF018NEO, ENCFF919GKE 1265415900 ENCODE Processing Pipeline e59f64a6d0d53f92828c961d4f1b9b78 https://www.encodeproject.org/files/ENCFF743VEF/@@download/ENCFF743VEF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF998GLD bed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF312NPA, ENCFF322DCQ 2858009 ENCODE Processing Pipeline 829fe5a0a8e436e9ab6f6ce91a7c27d3 https://www.encodeproject.org/files/ENCFF998GLD/@@download/ENCFF998GLD.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF363IFQ bed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF743VEF, ENCFF979XVT 2947384 ENCODE Processing Pipeline 1d26a9ed3509a2c7939775399785540d https://www.encodeproject.org/files/ENCFF363IFQ/@@download/ENCFF363IFQ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF693AFP bed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF312NPA, ENCFF322DCQ, ENCFF743VEF, ENCFF979XVT 3025671 ENCODE Processing Pipeline b279fbe6a35fb0e66769580486de4c4b https://www.encodeproject.org/files/ENCFF693AFP/@@download/ENCFF693AFP.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF535SYR bigBed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF363IFQ 6503770 ENCODE Processing Pipeline ce8154497431c80e3fb9f23af2aaffcc https://www.encodeproject.org/files/ENCFF535SYR/@@download/ENCFF535SYR.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF085WXM bigBed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF998GLD 6455329 ENCODE Processing Pipeline a072ecf952193c4c7db5496f6cd82b3b https://www.encodeproject.org/files/ENCFF085WXM/@@download/ENCFF085WXM.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF084JCD bigBed narrowPeak peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF693AFP 6661195 ENCODE Processing Pipeline 9e8c0f4c78991af832c491dbb4301758 https://www.encodeproject.org/files/ENCFF084JCD/@@download/ENCFF084JCD.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF820PLA bigWig signal p-value ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF312NPA, ENCFF322DCQ 535062540 ENCODE Processing Pipeline 573ac00fa93c6d71f1880734c744f7ae https://www.encodeproject.org/files/ENCFF820PLA/@@download/ENCFF820PLA.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF181JEE bigWig signal p-value ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF743VEF, ENCFF979XVT 445718614 ENCODE Processing Pipeline eb430e6a13e6b63666078c3855632d06 https://www.encodeproject.org/files/ENCFF181JEE/@@download/ENCFF181JEE.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF733TRQ bigWig signal p-value ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF312NPA, ENCFF322DCQ, ENCFF743VEF, ENCFF979XVT 754250235 ENCODE Processing Pipeline 79a818c6c6319d340b26071e2946456e https://www.encodeproject.org/files/ENCFF733TRQ/@@download/ENCFF733TRQ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF397BNO bigWig fold change over control ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF743VEF, ENCFF979XVT 539206791 ENCODE Processing Pipeline 20a99cee70105f30339d4780c65dd99e https://www.encodeproject.org/files/ENCFF397BNO/@@download/ENCFF397BNO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF256PWZ bigWig fold change over control ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF312NPA, ENCFF322DCQ 532789367 ENCODE Processing Pipeline b73cd4c7bf2e0eec8cc0bb728e55c7d8 https://www.encodeproject.org/files/ENCFF256PWZ/@@download/ENCFF256PWZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF690EIB bigWig fold change over control ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF312NPA, ENCFF322DCQ, ENCFF743VEF, ENCFF979XVT 1040564891 ENCODE Processing Pipeline 554f9003e1376866238bcf281895bfaf https://www.encodeproject.org/files/ENCFF690EIB/@@download/ENCFF690EIB.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF048QUK bed narrowPeak replicated peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF363IFQ, ENCFF693AFP, ENCFF998GLD 2190147 ENCODE Processing Pipeline fc58989e2afb1b7c4e645f649507d627 https://www.encodeproject.org/files/ENCFF048QUK/@@download/ENCFF048QUK.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF215HIC bigBed narrowPeak replicated peaks ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF048QUK 3803424 ENCODE Processing Pipeline 684c5045311cbc72245a3edcaff0464a https://www.encodeproject.org/files/ENCFF215HIC/@@download/ENCFF215HIC.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF766WMT fastq reads ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 2442042143 Bing Ren, UCSD aae958b6eaefcd8f02a96b087ba05b6c SRA:SRR3653005 https://www.encodeproject.org/files/ENCFF766WMT/@@download/ENCFF766WMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released inconsistent platforms ENCFF408DZQ fastq reads ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 2010522526 Bing Ren, UCSD b0047055f7722ecccdde6b991491bd89 SRA:SRR3653004 https://www.encodeproject.org/files/ENCFF408DZQ/@@download/ENCFF408DZQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released inconsistent platforms ENCFF746PPT bam alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF766WMT, ENCFF806TVZ 1650136875 ENCODE Processing Pipeline 67476caca6db0530bf22fd4826fbd3a0 https://www.encodeproject.org/files/ENCFF746PPT/@@download/ENCFF746PPT.bam mm10-minimal archived inconsistent platforms ENCFF047XND bam alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF408DZQ, ENCFF806TVZ 1186384720 ENCODE Processing Pipeline e923a438d44189f9398502816bde03a6 https://www.encodeproject.org/files/ENCFF047XND/@@download/ENCFF047XND.bam mm10-minimal archived inconsistent platforms ENCFF213NRW bed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF746PPT, ENCFF949WTQ 294017 ENCODE Processing Pipeline 2d60482ea17c21e959dbdbfe2207d063 https://www.encodeproject.org/files/ENCFF213NRW/@@download/ENCFF213NRW.bed.gz mm10-minimal archived inconsistent platforms ENCFF807DEB bigWig signal p-value ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF029DGH, ENCFF047XND 495269951 ENCODE Processing Pipeline 54fca78f1952ba94a871370828bb203b https://www.encodeproject.org/files/ENCFF807DEB/@@download/ENCFF807DEB.bigWig mm10-minimal archived inconsistent platforms ENCFF311JUG bigWig signal p-value ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF746PPT, ENCFF949WTQ 617607540 ENCODE Processing Pipeline 931e4c2d580d841c9fd40ed0f91348a9 https://www.encodeproject.org/files/ENCFF311JUG/@@download/ENCFF311JUG.bigWig mm10-minimal archived inconsistent platforms ENCFF836XPH bed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF029DGH, ENCFF047XND, ENCFF746PPT, ENCFF949WTQ 475251 ENCODE Processing Pipeline 3b252e0ee788bc4cdc47dc3fe33368da https://www.encodeproject.org/files/ENCFF836XPH/@@download/ENCFF836XPH.bed.gz mm10-minimal archived inconsistent platforms ENCFF854DCQ bigBed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF213NRW 523862 ENCODE Processing Pipeline 4993157184606fe3f072f251dc9942f2 https://www.encodeproject.org/files/ENCFF854DCQ/@@download/ENCFF854DCQ.bigBed mm10-minimal archived inconsistent platforms ENCFF499RUT bigBed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF836XPH 1169405 ENCODE Processing Pipeline 9cf3aafec5cdbee2190ec56c3e27188d https://www.encodeproject.org/files/ENCFF499RUT/@@download/ENCFF499RUT.bigBed mm10-minimal archived inconsistent platforms ENCFF600YFJ bigWig signal p-value ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF029DGH, ENCFF047XND, ENCFF746PPT, ENCFF949WTQ 941119574 ENCODE Processing Pipeline 6fdc413f2be5484dad250b87bc85c3f9 https://www.encodeproject.org/files/ENCFF600YFJ/@@download/ENCFF600YFJ.bigWig mm10-minimal archived inconsistent platforms ENCFF874VZR bigWig fold change over control ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF746PPT, ENCFF949WTQ 627882800 ENCODE Processing Pipeline 4a9a1e27e37384422ea16948090c8d32 https://www.encodeproject.org/files/ENCFF874VZR/@@download/ENCFF874VZR.bigWig mm10-minimal archived inconsistent platforms ENCFF124RLQ bed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF029DGH, ENCFF047XND 425919 ENCODE Processing Pipeline 44f0bd8a9bad94e0cdaa611a0ccaa389 https://www.encodeproject.org/files/ENCFF124RLQ/@@download/ENCFF124RLQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF073IVL bed narrowPeak replicated peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF124RLQ, ENCFF213NRW, ENCFF836XPH 83854 ENCODE Processing Pipeline 1ecffe7d0bab6389a1ca657e996073c8 https://www.encodeproject.org/files/ENCFF073IVL/@@download/ENCFF073IVL.bed.gz mm10-minimal archived inconsistent platforms ENCFF453SAX bigBed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF124RLQ 865889 ENCODE Processing Pipeline 62c3b2a76dead1276650bc4f2cbdf2d2 https://www.encodeproject.org/files/ENCFF453SAX/@@download/ENCFF453SAX.bigBed mm10-minimal archived inconsistent platforms ENCFF700DYK bigWig fold change over control ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF029DGH, ENCFF047XND 460072769 ENCODE Processing Pipeline 7711b219d50b6e531d72b37f483e2ecf https://www.encodeproject.org/files/ENCFF700DYK/@@download/ENCFF700DYK.bigWig mm10-minimal archived inconsistent platforms ENCFF557KWR bigBed narrowPeak replicated peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF073IVL 263047 ENCODE Processing Pipeline 6a4619a42b216af9f95cd45e5ddfa238 https://www.encodeproject.org/files/ENCFF557KWR/@@download/ENCFF557KWR.bigBed mm10-minimal archived inconsistent platforms ENCFF453EHO bigWig fold change over control ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF029DGH, ENCFF047XND, ENCFF746PPT, ENCFF949WTQ 1081553359 ENCODE Processing Pipeline faced8226af8c0a88340662d28389788 https://www.encodeproject.org/files/ENCFF453EHO/@@download/ENCFF453EHO.bigWig mm10-minimal archived inconsistent platforms ENCFF153WVM bam unfiltered alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF408DZQ 2451170674 ENCODE Processing Pipeline 4f96e386601673821f4f4132188e19ee https://www.encodeproject.org/files/ENCFF153WVM/@@download/ENCFF153WVM.bam mm10 released inconsistent platforms ENCFF356KIL bam unfiltered alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF766WMT 2975599119 ENCODE Processing Pipeline bd41d147a8b260485f2ac2d0350c64ae https://www.encodeproject.org/files/ENCFF356KIL/@@download/ENCFF356KIL.bam mm10 released inconsistent platforms ENCFF380FFY bam alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF408DZQ 1185790203 ENCODE Processing Pipeline b4bfa0a1ed86e8bc09ae4c2a390e1505 https://www.encodeproject.org/files/ENCFF380FFY/@@download/ENCFF380FFY.bam mm10 released inconsistent platforms ENCFF222SXN bam alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF766WMT 1649506047 ENCODE Processing Pipeline e508842ca0a6368cacefde2a2dc740b2 https://www.encodeproject.org/files/ENCFF222SXN/@@download/ENCFF222SXN.bam mm10 released inconsistent platforms ENCFF513PWS bed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF222SXN, ENCFF269JKO 320453 ENCODE Processing Pipeline dfbd3b09e1a0a6c144130716a7ae8d8c https://www.encodeproject.org/files/ENCFF513PWS/@@download/ENCFF513PWS.bed.gz mm10 released inconsistent platforms ENCFF116RIP bigBed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF909UTQ 1086374 ENCODE Processing Pipeline 6484beecc772ee1dcee32bebd4f0f311 https://www.encodeproject.org/files/ENCFF116RIP/@@download/ENCFF116RIP.bigBed mm10 released inconsistent platforms ENCFF909UTQ bed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF079JAD, ENCFF222SXN, ENCFF269JKO, ENCFF380FFY 430962 ENCODE Processing Pipeline c24cb4a0a9ce38d3ae629a059db36967 https://www.encodeproject.org/files/ENCFF909UTQ/@@download/ENCFF909UTQ.bed.gz mm10 released inconsistent platforms ENCFF282AYN bigWig signal p-value ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF079JAD, ENCFF222SXN, ENCFF269JKO, ENCFF380FFY 1059214185 ENCODE Processing Pipeline 1c245a4416ed4e2f9d7c5fc3213b9a7f https://www.encodeproject.org/files/ENCFF282AYN/@@download/ENCFF282AYN.bigWig mm10 released inconsistent platforms ENCFF176BQS bigBed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF348HEO 949809 ENCODE Processing Pipeline 39fff9a1f96d9d260ba5a2842c067736 https://www.encodeproject.org/files/ENCFF176BQS/@@download/ENCFF176BQS.bigBed mm10 released inconsistent platforms ENCFF348HEO bed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF079JAD, ENCFF380FFY 472710 ENCODE Processing Pipeline b683744a3d447c0d4dcc5458ffbcfe26 https://www.encodeproject.org/files/ENCFF348HEO/@@download/ENCFF348HEO.bed.gz mm10 released inconsistent platforms ENCFF569CCI bigBed narrowPeak peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF513PWS 562322 ENCODE Processing Pipeline f6ba20be6a8f133dc1bcd2d87781c06b https://www.encodeproject.org/files/ENCFF569CCI/@@download/ENCFF569CCI.bigBed mm10 released inconsistent platforms ENCFF926NPQ bigWig signal p-value ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF079JAD, ENCFF380FFY 639465080 ENCODE Processing Pipeline bf34173acebaa08a92464f0092e4fe88 https://www.encodeproject.org/files/ENCFF926NPQ/@@download/ENCFF926NPQ.bigWig mm10 released inconsistent platforms ENCFF561HNV bigWig signal p-value ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF222SXN, ENCFF269JKO 722723701 ENCODE Processing Pipeline 8d680adaceef26f0129877f3ddb631f4 https://www.encodeproject.org/files/ENCFF561HNV/@@download/ENCFF561HNV.bigWig mm10 released inconsistent platforms ENCFF751PKQ bigWig fold change over control ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF079JAD, ENCFF380FFY 597656160 ENCODE Processing Pipeline ed9cd9b0bc6fe92c6248bfda8ef6e8cd https://www.encodeproject.org/files/ENCFF751PKQ/@@download/ENCFF751PKQ.bigWig mm10 released inconsistent platforms ENCFF482TMH bigWig fold change over control ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF222SXN, ENCFF269JKO 715277618 ENCODE Processing Pipeline cdcb6e9e5d8d5885faecf757b6a503d2 https://www.encodeproject.org/files/ENCFF482TMH/@@download/ENCFF482TMH.bigWig mm10 released inconsistent platforms ENCFF368BVK bigWig fold change over control ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF079JAD, ENCFF222SXN, ENCFF269JKO, ENCFF380FFY 1265883704 ENCODE Processing Pipeline 193358a066d0f02a453b8f0c82a77954 https://www.encodeproject.org/files/ENCFF368BVK/@@download/ENCFF368BVK.bigWig mm10 released inconsistent platforms ENCFF830QJG bigBed narrowPeak replicated peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF346HOE 329966 ENCODE Processing Pipeline 176e2e5ff9aa94fac27393aa6a563db8 https://www.encodeproject.org/files/ENCFF830QJG/@@download/ENCFF830QJG.bigBed mm10 released inconsistent platforms ENCFF346HOE bed narrowPeak replicated peaks ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF348HEO, ENCFF513PWS, ENCFF909UTQ 90951 ENCODE Processing Pipeline 458ab1e2573db082e9f927a4b5718dd8 https://www.encodeproject.org/files/ENCFF346HOE/@@download/ENCFF346HOE.bed.gz mm10 released inconsistent platforms ENCFF002ESR fastq reads ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1103611026 Bing Ren, UCSD 344cefe8e0d1c17762da5444da26ae02 SRA:SRR3651470 https://www.encodeproject.org/files/ENCFF002ESR/@@download/ENCFF002ESR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXL/ released low read length insufficient read depth, control insufficient read depth ENCFF002EST fastq reads ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1138581043 Bing Ren, UCSD 96221f2a22bb9034b1ceabfd4585e780 SRA:SRR3651469 https://www.encodeproject.org/files/ENCFF002EST/@@download/ENCFF002EST.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXM/ released low read length insufficient read depth, control insufficient read depth ENCFF927INJ bam alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EST, ENCFF806TVZ 1035188861 ENCODE Processing Pipeline 3107aa70834a3a22c64b1d13740b2c8a https://www.encodeproject.org/files/ENCFF927INJ/@@download/ENCFF927INJ.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF505WFA bam alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESR, ENCFF806TVZ 1030303804 ENCODE Processing Pipeline 21a7419bbd98579257fd69b012e99f67 https://www.encodeproject.org/files/ENCFF505WFA/@@download/ENCFF505WFA.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF118YHV bigWig signal p-value ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF395ALO, ENCFF505WFA, ENCFF927INJ, ENCFF956BKJ 517810500 ENCODE Processing Pipeline bc17eb6ed6f0eefa1c9894bcca67af4b https://www.encodeproject.org/files/ENCFF118YHV/@@download/ENCFF118YHV.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF343CCM bed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF505WFA, ENCFF956BKJ 2794066 ENCODE Processing Pipeline 303572cbe3a66f8cfa85d521f2972eb3 https://www.encodeproject.org/files/ENCFF343CCM/@@download/ENCFF343CCM.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF345YRR bigWig signal p-value ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF505WFA, ENCFF956BKJ 520307172 ENCODE Processing Pipeline 970b8e35d08d31ccdf9e93a3f0b7f42a https://www.encodeproject.org/files/ENCFF345YRR/@@download/ENCFF345YRR.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF962PYY bed narrowPeak replicated peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF020OCP, ENCFF182EXR, ENCFF343CCM 2725912 ENCODE Processing Pipeline e18ab7dd692e501a90632daae532a887 https://www.encodeproject.org/files/ENCFF962PYY/@@download/ENCFF962PYY.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF805FQN bigBed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF343CCM 7810227 ENCODE Processing Pipeline 22e731fff64dc40ebfd1c205d5d588e7 https://www.encodeproject.org/files/ENCFF805FQN/@@download/ENCFF805FQN.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF998PZC bigWig fold change over control ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF927INJ, ENCFF956BKJ 461353727 ENCODE Processing Pipeline 2930786ee12bf28b56f37d2587af8a4d https://www.encodeproject.org/files/ENCFF998PZC/@@download/ENCFF998PZC.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF126SKZ bigBed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF182EXR 8025124 ENCODE Processing Pipeline 856e2702ef035277d2cb320b4f936ada https://www.encodeproject.org/files/ENCFF126SKZ/@@download/ENCFF126SKZ.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF152NIQ bigBed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF020OCP 6716849 ENCODE Processing Pipeline 2c4b75bbb72fe58277373f41c52ccff2 https://www.encodeproject.org/files/ENCFF152NIQ/@@download/ENCFF152NIQ.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF911TWB bigWig fold change over control ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF505WFA, ENCFF956BKJ 462132768 ENCODE Processing Pipeline 14b9f62e71dd5fed8de4caabe4b7e730 https://www.encodeproject.org/files/ENCFF911TWB/@@download/ENCFF911TWB.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF020OCP bed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF395ALO, ENCFF505WFA, ENCFF927INJ, ENCFF956BKJ 2368820 ENCODE Processing Pipeline cf68968307d3f9e206d36c2110323fd3 https://www.encodeproject.org/files/ENCFF020OCP/@@download/ENCFF020OCP.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF108VJS bigWig fold change over control ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF395ALO, ENCFF505WFA, ENCFF927INJ, ENCFF956BKJ 744054032 ENCODE Processing Pipeline e791620f306c9f939a6f2b331426008f https://www.encodeproject.org/files/ENCFF108VJS/@@download/ENCFF108VJS.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF367NIB bigBed narrowPeak replicated peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF962PYY 5973687 ENCODE Processing Pipeline edc2f39ef0d17f613e05198aa8bc1ef9 https://www.encodeproject.org/files/ENCFF367NIB/@@download/ENCFF367NIB.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF182EXR bed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF927INJ, ENCFF956BKJ 2869448 ENCODE Processing Pipeline f5b9f815446f2d90705d7108dadfedd9 https://www.encodeproject.org/files/ENCFF182EXR/@@download/ENCFF182EXR.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF882GFT bigWig signal p-value ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF927INJ, ENCFF956BKJ 376374727 ENCODE Processing Pipeline 66a7813a23db613d0faf7e9506a804ac https://www.encodeproject.org/files/ENCFF882GFT/@@download/ENCFF882GFT.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF281PJL bam unfiltered alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESR, ENCFF018NEO 1398419869 ENCODE Processing Pipeline 9af0892b9b90b4ecda1ec4ffbe5c700f https://www.encodeproject.org/files/ENCFF281PJL/@@download/ENCFF281PJL.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF173GJJ bam unfiltered alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EST, ENCFF018NEO 1443056335 ENCODE Processing Pipeline d0e8cf2fd8a86be88139624b014f54a6 https://www.encodeproject.org/files/ENCFF173GJJ/@@download/ENCFF173GJJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF962VUP bam alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESR, ENCFF018NEO 1030110388 ENCODE Processing Pipeline d0bf518a813d113059b8bf66cf5c1338 https://www.encodeproject.org/files/ENCFF962VUP/@@download/ENCFF962VUP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF927HGA bam alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EST, ENCFF018NEO 1034958855 ENCODE Processing Pipeline d43f29b10e026b2d462f3c8f6b7b513c https://www.encodeproject.org/files/ENCFF927HGA/@@download/ENCFF927HGA.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF597KMV bed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF927HGA 1623921 ENCODE Processing Pipeline 45d4302488e7eabc426cad1846920917 https://www.encodeproject.org/files/ENCFF597KMV/@@download/ENCFF597KMV.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF230BCI bed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF927HGA, ENCFF962VUP 2368608 ENCODE Processing Pipeline 0d4a38a5d4c14061791fd29c0af27c6e https://www.encodeproject.org/files/ENCFF230BCI/@@download/ENCFF230BCI.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF732GXS bed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF962VUP 3067015 ENCODE Processing Pipeline 0359630c84a08766e2fc436053ae3bbc https://www.encodeproject.org/files/ENCFF732GXS/@@download/ENCFF732GXS.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF618MKI bigBed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF732GXS 8509543 ENCODE Processing Pipeline 09379a7686da3a91101f2a327a14a50a https://www.encodeproject.org/files/ENCFF618MKI/@@download/ENCFF618MKI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF226QRQ bigBed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF597KMV 3794383 ENCODE Processing Pipeline f5ac097c0b3e61cf43a926a7cb07d5a4 https://www.encodeproject.org/files/ENCFF226QRQ/@@download/ENCFF226QRQ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF680EPY bigBed narrowPeak peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF230BCI 6719896 ENCODE Processing Pipeline f477362dd8477f53c26b8d2d74d27277 https://www.encodeproject.org/files/ENCFF680EPY/@@download/ENCFF680EPY.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF176HTY bigWig signal p-value ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF962VUP 468071733 ENCODE Processing Pipeline 8c5d7987ca0b56a3b1cfdcae64153f5f https://www.encodeproject.org/files/ENCFF176HTY/@@download/ENCFF176HTY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF739OWD bigWig signal p-value ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF927HGA 283439483 ENCODE Processing Pipeline c71d743f1bde57eda35e9bc194bcce8f https://www.encodeproject.org/files/ENCFF739OWD/@@download/ENCFF739OWD.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF688CEI bigWig signal p-value ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF927HGA, ENCFF962VUP 517768458 ENCODE Processing Pipeline 9c9aa2fa862baf9579a97c781f0dee70 https://www.encodeproject.org/files/ENCFF688CEI/@@download/ENCFF688CEI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF242BZD bigWig fold change over control ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF962VUP 457650933 ENCODE Processing Pipeline b026190dd7eb7b79a29b001748e505d0 https://www.encodeproject.org/files/ENCFF242BZD/@@download/ENCFF242BZD.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF134UAK bigWig fold change over control ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF927HGA 377537936 ENCODE Processing Pipeline 1641d592d6064cd4c68b853e8380e8a3 https://www.encodeproject.org/files/ENCFF134UAK/@@download/ENCFF134UAK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF370LAC bigBed narrowPeak replicated peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF502DRX 5697451 ENCODE Processing Pipeline 1e97130f4f1067bb3c5697ea5dabf9d9 https://www.encodeproject.org/files/ENCFF370LAC/@@download/ENCFF370LAC.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF033MMS bigWig fold change over control ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF927HGA, ENCFF962VUP 745896935 ENCODE Processing Pipeline fb59788f62f7f3cbd0b107796015a91c https://www.encodeproject.org/files/ENCFF033MMS/@@download/ENCFF033MMS.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF502DRX bed narrowPeak replicated peaks ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF230BCI, ENCFF597KMV, ENCFF732GXS 2579399 ENCODE Processing Pipeline 708ffe3f19911d6aabcb41b824eda877 https://www.encodeproject.org/files/ENCFF502DRX/@@download/ENCFF502DRX.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002AIL fastq reads ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1580266081 Bing Ren, UCSD 2fb71487f55806ecaab49fcbca0bcb21 SRA:SRR3651291 https://www.encodeproject.org/files/ENCFF002AIL/@@download/ENCFF002AIL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQR/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF002AIQ fastq reads ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2227479581 Bing Ren, UCSD 9a3257f0f64b09ab3f7c14a5ff337a3b SRA:SRR3651290 https://www.encodeproject.org/files/ENCFF002AIQ/@@download/ENCFF002AIQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQQ/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF295YGU bam alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIQ, ENCFF806TVZ 1624187867 ENCODE Processing Pipeline 7849f550ee8877b4622385bff22af6cf https://www.encodeproject.org/files/ENCFF295YGU/@@download/ENCFF295YGU.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF699WMR fastq reads ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 377486702 Bing Ren, UCSD 59a44016ed7bd83e1b28f1a517768981 SRA:SRR3651292 https://www.encodeproject.org/files/ENCFF699WMR/@@download/ENCFF699WMR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQR/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF232WDK bam alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIL, ENCFF699WMR, ENCFF806TVZ 1248786954 ENCODE Processing Pipeline 5a91fa45ef9806f200b3d26eaa54db40 https://www.encodeproject.org/files/ENCFF232WDK/@@download/ENCFF232WDK.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF651QLY bed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF232WDK, ENCFF791KJV 2888090 ENCODE Processing Pipeline eb40a7cac5c90eff4059e3f854d831b0 https://www.encodeproject.org/files/ENCFF651QLY/@@download/ENCFF651QLY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF446BRQ bigBed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF290PQL 4414936 ENCODE Processing Pipeline fb02bdf81ddd883226176f25293ff34c https://www.encodeproject.org/files/ENCFF446BRQ/@@download/ENCFF446BRQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF290PQL bed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF295YGU, ENCFF791KJV 2026467 ENCODE Processing Pipeline 1d9273c5250b86abc1d9c775854f2b3d https://www.encodeproject.org/files/ENCFF290PQL/@@download/ENCFF290PQL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF420IJF bigBed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF651QLY 4946827 ENCODE Processing Pipeline 76438d396ea4b89750f7517233eb061c https://www.encodeproject.org/files/ENCFF420IJF/@@download/ENCFF420IJF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF051OXH bigBed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF420RBR 6007427 ENCODE Processing Pipeline 92345f6b22122aefd7b499a99ad5b07d https://www.encodeproject.org/files/ENCFF051OXH/@@download/ENCFF051OXH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF094UIY bigWig fold change over control ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF295YGU, ENCFF791KJV 658169404 ENCODE Processing Pipeline 496e025e7e93bdd9d8f40eece9afc50b https://www.encodeproject.org/files/ENCFF094UIY/@@download/ENCFF094UIY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF420RBR bed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF232WDK, ENCFF295YGU, ENCFF791KJV 2817150 ENCODE Processing Pipeline e23662f329f1d95d24488de55f3124ce https://www.encodeproject.org/files/ENCFF420RBR/@@download/ENCFF420RBR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF043RIB bigWig signal p-value ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF232WDK, ENCFF791KJV 542037758 ENCODE Processing Pipeline cca678106de2706eec2c80fde59e9df2 https://www.encodeproject.org/files/ENCFF043RIB/@@download/ENCFF043RIB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF176STW bigWig signal p-value ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF232WDK, ENCFF295YGU, ENCFF791KJV 642611177 ENCODE Processing Pipeline b14b5946472cec705cb645a46a4c2a2b https://www.encodeproject.org/files/ENCFF176STW/@@download/ENCFF176STW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF248GXQ bigWig signal p-value ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF295YGU, ENCFF791KJV 672179298 ENCODE Processing Pipeline 2b97d802b5bbbb288c50b3166f2eed5f https://www.encodeproject.org/files/ENCFF248GXQ/@@download/ENCFF248GXQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF022DOE bigWig fold change over control ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF232WDK, ENCFF791KJV 496078875 ENCODE Processing Pipeline cb7382639cb50bec72c8be3aa9fc8c4f https://www.encodeproject.org/files/ENCFF022DOE/@@download/ENCFF022DOE.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF091JOV bigWig fold change over control ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF232WDK, ENCFF295YGU, ENCFF791KJV 879369938 ENCODE Processing Pipeline fc0c88580701255a56cfbf938410b711 https://www.encodeproject.org/files/ENCFF091JOV/@@download/ENCFF091JOV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF153LZU bed narrowPeak replicated peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290PQL, ENCFF420RBR, ENCFF651QLY 1803412 ENCODE Processing Pipeline 782ce1963183e370510da89350dc81c8 https://www.encodeproject.org/files/ENCFF153LZU/@@download/ENCFF153LZU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF820WPC bigBed narrowPeak replicated peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF153LZU 3378113 ENCODE Processing Pipeline 7de18759d698a471598cb952cfe9eb0c https://www.encodeproject.org/files/ENCFF820WPC/@@download/ENCFF820WPC.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF013HYD bam unfiltered alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIQ, ENCFF018NEO 2317819647 ENCODE Processing Pipeline 21abf3c535df9590bbb8b15ed8467d29 https://www.encodeproject.org/files/ENCFF013HYD/@@download/ENCFF013HYD.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF455QRZ bam unfiltered alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AIL, ENCFF018NEO, ENCFF699WMR 2150780286 ENCODE Processing Pipeline 84139a2c3e85c59360956192569768f6 https://www.encodeproject.org/files/ENCFF455QRZ/@@download/ENCFF455QRZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF882ITE bam alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AIL, ENCFF018NEO, ENCFF699WMR 1248493198 ENCODE Processing Pipeline fdb2a240a7027abb2227b0fec6c4bed2 https://www.encodeproject.org/files/ENCFF882ITE/@@download/ENCFF882ITE.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF504OKT bam alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIQ, ENCFF018NEO 1623775648 ENCODE Processing Pipeline c0000dd7019829211cbceff5a570581f https://www.encodeproject.org/files/ENCFF504OKT/@@download/ENCFF504OKT.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF908TIZ bed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF453URD, ENCFF504OKT, ENCFF702TNM 2267726 ENCODE Processing Pipeline c135b7712f530ae2199bc405de59ef24 https://www.encodeproject.org/files/ENCFF908TIZ/@@download/ENCFF908TIZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF414ABT bed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453URD, ENCFF702TNM, ENCFF882ITE 2888169 ENCODE Processing Pipeline 7831959480e96d685f5de3a40fc85f73 https://www.encodeproject.org/files/ENCFF414ABT/@@download/ENCFF414ABT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF670BNP bed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF453URD, ENCFF504OKT, ENCFF702TNM, ENCFF882ITE 2824960 ENCODE Processing Pipeline 02035b670fe118f850e2e6533b8b4c4b https://www.encodeproject.org/files/ENCFF670BNP/@@download/ENCFF670BNP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF360SDU bigBed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF908TIZ 4898224 ENCODE Processing Pipeline c9ee18e6eff251a587c2988714d8f62a https://www.encodeproject.org/files/ENCFF360SDU/@@download/ENCFF360SDU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF485UCI bigBed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF414ABT 4946708 ENCODE Processing Pipeline 2106745794e205e2ea66dc1691cc3d26 https://www.encodeproject.org/files/ENCFF485UCI/@@download/ENCFF485UCI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF040MKZ bigBed narrowPeak peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF670BNP 6032469 ENCODE Processing Pipeline 21ab0ab4d090286d23e0948f57a83501 https://www.encodeproject.org/files/ENCFF040MKZ/@@download/ENCFF040MKZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF916RNH bigWig signal p-value ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF453URD, ENCFF504OKT, ENCFF702TNM 612961423 ENCODE Processing Pipeline 5177c66d5d35e250d4a9fd68f9b3d05b https://www.encodeproject.org/files/ENCFF916RNH/@@download/ENCFF916RNH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF225SOH bigWig signal p-value ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453URD, ENCFF702TNM, ENCFF882ITE 594739773 ENCODE Processing Pipeline 91864a390c5c638a2262cefb573740d1 https://www.encodeproject.org/files/ENCFF225SOH/@@download/ENCFF225SOH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF749MUK bigWig signal p-value ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF453URD, ENCFF504OKT, ENCFF702TNM, ENCFF882ITE 879321386 ENCODE Processing Pipeline d960eafe19636dfce21c66a7ea5f6669 https://www.encodeproject.org/files/ENCFF749MUK/@@download/ENCFF749MUK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF132XVH bigWig fold change over control ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF453URD, ENCFF504OKT, ENCFF702TNM 606042796 ENCODE Processing Pipeline 2d5f250b49724115a42df212acc48a88 https://www.encodeproject.org/files/ENCFF132XVH/@@download/ENCFF132XVH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF300KEM bigWig fold change over control ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453URD, ENCFF702TNM, ENCFF882ITE 495093696 ENCODE Processing Pipeline 376f815d37785104b2d714bc3191d869 https://www.encodeproject.org/files/ENCFF300KEM/@@download/ENCFF300KEM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF606CKV bigWig fold change over control ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF453URD, ENCFF504OKT, ENCFF702TNM, ENCFF882ITE 888793582 ENCODE Processing Pipeline 1d71352bb023d9918cd4d27710d87cb1 https://www.encodeproject.org/files/ENCFF606CKV/@@download/ENCFF606CKV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF999HGN bed narrowPeak replicated peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF414ABT, ENCFF670BNP, ENCFF908TIZ 1830913 ENCODE Processing Pipeline 8e5b5e690c51a5d01d870730ba90514f https://www.encodeproject.org/files/ENCFF999HGN/@@download/ENCFF999HGN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF460OVN bigBed narrowPeak replicated peaks ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF999HGN 3421853 ENCODE Processing Pipeline 558a7b011fa3a48fa64b893374d53667 https://www.encodeproject.org/files/ENCFF460OVN/@@download/ENCFF460OVN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF773RTW fastq reads ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2655876208 Bing Ren, UCSD 5dbf5b55db374df7a7ae9f44525b2bc7 SRA:SRR3653162 https://www.encodeproject.org/files/ENCFF773RTW/@@download/ENCFF773RTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF380ABN fastq reads ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 759764362 Bing Ren, UCSD 42c2563e7ffc35dfa1d98194c4caa5ff SRA:SRR3653163 https://www.encodeproject.org/files/ENCFF380ABN/@@download/ENCFF380ABN.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF354RLO fastq reads ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2343594195 Bing Ren, UCSD f60103ec599e5ecfe264c320b0cb64fc SRA:SRR3653164 https://www.encodeproject.org/files/ENCFF354RLO/@@download/ENCFF354RLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF235AQC fastq reads ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1284683404 Bing Ren, UCSD 5204b21c956721197ae894022ca8b945 SRA:SRR3653165 https://www.encodeproject.org/files/ENCFF235AQC/@@download/ENCFF235AQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF565ITO bam alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF235AQC, ENCFF354RLO, ENCFF806TVZ 3011587814 ENCODE Processing Pipeline 913fdd2bed7512bc6bbecc713ee53660 https://www.encodeproject.org/files/ENCFF565ITO/@@download/ENCFF565ITO.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF571NBL bam alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF380ABN, ENCFF773RTW, ENCFF806TVZ 2947132502 ENCODE Processing Pipeline 8e12983a0f256f03deeecf75c9650f50 https://www.encodeproject.org/files/ENCFF571NBL/@@download/ENCFF571NBL.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF216OJT bed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245YVK, ENCFF571NBL, ENCFF582LOU 965644 ENCODE Processing Pipeline 8d39fde4b35702645e4539ce44c095b0 https://www.encodeproject.org/files/ENCFF216OJT/@@download/ENCFF216OJT.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF837LYB bed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF565ITO, ENCFF582LOU 906732 ENCODE Processing Pipeline 8dc4199443bf2ef81aacbb4219807e9c https://www.encodeproject.org/files/ENCFF837LYB/@@download/ENCFF837LYB.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF682AOC bed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF565ITO, ENCFF571NBL, ENCFF582LOU 666866 ENCODE Processing Pipeline 65011b88db9455549f33d972a96a3b53 https://www.encodeproject.org/files/ENCFF682AOC/@@download/ENCFF682AOC.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF349RGX bigBed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF837LYB 2105492 ENCODE Processing Pipeline 6541fd765ae5e98668d96d9abb32c79b https://www.encodeproject.org/files/ENCFF349RGX/@@download/ENCFF349RGX.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF516UDQ bigBed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF216OJT 2201961 ENCODE Processing Pipeline cf21d61b9bf7d24e8a4aedb2701c287a https://www.encodeproject.org/files/ENCFF516UDQ/@@download/ENCFF516UDQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF613LAC bigBed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF682AOC 1456915 ENCODE Processing Pipeline 2e625f8ace760bdde6bb8429d898c27e https://www.encodeproject.org/files/ENCFF613LAC/@@download/ENCFF613LAC.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF555LZW bigWig signal p-value ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245YVK, ENCFF571NBL, ENCFF582LOU 807606923 ENCODE Processing Pipeline b57ab3e1df07baf9352f8e7bc6c39090 https://www.encodeproject.org/files/ENCFF555LZW/@@download/ENCFF555LZW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF257OIB bigWig signal p-value ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF565ITO, ENCFF582LOU 1018649437 ENCODE Processing Pipeline 448af96a2601a93b44d8709f3bbe4d3e https://www.encodeproject.org/files/ENCFF257OIB/@@download/ENCFF257OIB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF125EQF bigWig signal p-value ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF565ITO, ENCFF571NBL, ENCFF582LOU 1393359387 ENCODE Processing Pipeline 298abdb5ad35ae7169d8a25eb6e2c7bf https://www.encodeproject.org/files/ENCFF125EQF/@@download/ENCFF125EQF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF820MPA bigWig fold change over control ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245YVK, ENCFF571NBL, ENCFF582LOU 1095557460 ENCODE Processing Pipeline be6b7f73d9ea531d8d6bfe7b43909ba7 https://www.encodeproject.org/files/ENCFF820MPA/@@download/ENCFF820MPA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF519ZRH bed narrowPeak replicated peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF216OJT, ENCFF682AOC, ENCFF837LYB 475993 ENCODE Processing Pipeline 7502e768d419936a92d6fbbc50e425d6 https://www.encodeproject.org/files/ENCFF519ZRH/@@download/ENCFF519ZRH.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF631HLO bigWig fold change over control ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF565ITO, ENCFF582LOU 1084316176 ENCODE Processing Pipeline b7bc3763ff211e2d9aeb4b31f76924c4 https://www.encodeproject.org/files/ENCFF631HLO/@@download/ENCFF631HLO.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF309IVZ bigWig fold change over control ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF565ITO, ENCFF571NBL, ENCFF582LOU 1624894633 ENCODE Processing Pipeline d6074fff9d7a48b115cfed18c07e3b6d https://www.encodeproject.org/files/ENCFF309IVZ/@@download/ENCFF309IVZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF532KIG bigBed narrowPeak replicated peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF519ZRH 1136027 ENCODE Processing Pipeline f53aeb280c02338005372aabad700788 https://www.encodeproject.org/files/ENCFF532KIG/@@download/ENCFF532KIG.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF105LAO bam unfiltered alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF380ABN, ENCFF773RTW 4119777702 ENCODE Processing Pipeline 447c90b6eacd06eb6520b63429aadb50 https://www.encodeproject.org/files/ENCFF105LAO/@@download/ENCFF105LAO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF913PSG bam unfiltered alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF235AQC, ENCFF354RLO 4351294628 ENCODE Processing Pipeline 9d130e13ef3bae4d7d644d76b3157c62 https://www.encodeproject.org/files/ENCFF913PSG/@@download/ENCFF913PSG.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF912GGR bam alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF380ABN, ENCFF773RTW 2946451801 ENCODE Processing Pipeline 811cdc6b7a9f61c22e4946448584e447 https://www.encodeproject.org/files/ENCFF912GGR/@@download/ENCFF912GGR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF802NAM bam alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF235AQC, ENCFF354RLO 3010902035 ENCODE Processing Pipeline 40da3babcef553f5f7860e8f3735696f https://www.encodeproject.org/files/ENCFF802NAM/@@download/ENCFF802NAM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF643GVH bed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF912GGR 965866 ENCODE Processing Pipeline b122b3bdb3a9cc0af78955b59c8cae7f https://www.encodeproject.org/files/ENCFF643GVH/@@download/ENCFF643GVH.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF240ISS bed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF802NAM 449382 ENCODE Processing Pipeline 1ef9e0c923fa88c8916a503f8f84f6d2 https://www.encodeproject.org/files/ENCFF240ISS/@@download/ENCFF240ISS.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF304XUQ bigBed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF643GVH 2203556 ENCODE Processing Pipeline eef8f1c0c95a36fa0566a6b52ed1eb41 https://www.encodeproject.org/files/ENCFF304XUQ/@@download/ENCFF304XUQ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF719JYT bed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF389YBT, ENCFF802NAM, ENCFF912GGR 757851 ENCODE Processing Pipeline 455f82e8f79226d8d36f6a838fa96f64 https://www.encodeproject.org/files/ENCFF719JYT/@@download/ENCFF719JYT.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF651LNS bigBed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF240ISS 1040503 ENCODE Processing Pipeline 3a097e0e04cfb526a767cb6e354b8657 https://www.encodeproject.org/files/ENCFF651LNS/@@download/ENCFF651LNS.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF654BRV bigBed narrowPeak peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF719JYT 1658646 ENCODE Processing Pipeline a8a6771dfd0b67569e8eb2d393d77f04 https://www.encodeproject.org/files/ENCFF654BRV/@@download/ENCFF654BRV.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF863VPR bigWig signal p-value ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF912GGR 1168871447 ENCODE Processing Pipeline d5b85f207523feb5f2b3b1dfea1aeb76 https://www.encodeproject.org/files/ENCFF863VPR/@@download/ENCFF863VPR.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF188FJV bigWig signal p-value ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF802NAM 947328402 ENCODE Processing Pipeline a15d5c2217bd334cbbe20aede3fa68dc https://www.encodeproject.org/files/ENCFF188FJV/@@download/ENCFF188FJV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF311WMY bigWig signal p-value ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF389YBT, ENCFF802NAM, ENCFF912GGR 1543310670 ENCODE Processing Pipeline 812fdae62b674c3343da71562a53a2d7 https://www.encodeproject.org/files/ENCFF311WMY/@@download/ENCFF311WMY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF918QGJ bigWig fold change over control ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF912GGR 1164474361 ENCODE Processing Pipeline 0ae0239038fb5b28052ef7d3cb8564ba https://www.encodeproject.org/files/ENCFF918QGJ/@@download/ENCFF918QGJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF818UIZ bigWig fold change over control ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF802NAM 993514248 ENCODE Processing Pipeline cafe7d16e14266a6b1685aacbf799066 https://www.encodeproject.org/files/ENCFF818UIZ/@@download/ENCFF818UIZ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF270YCY bigWig fold change over control ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF389YBT, ENCFF802NAM, ENCFF912GGR 1641572497 ENCODE Processing Pipeline 64886b78f4cd70531fceffbaeafd4adb https://www.encodeproject.org/files/ENCFF270YCY/@@download/ENCFF270YCY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF216ZQH bed narrowPeak replicated peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF240ISS, ENCFF643GVH, ENCFF719JYT 412537 ENCODE Processing Pipeline d93d562750c7812eccbee3340418ef6d https://www.encodeproject.org/files/ENCFF216ZQH/@@download/ENCFF216ZQH.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF079FOC bigBed narrowPeak replicated peaks ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF216ZQH 986999 ENCODE Processing Pipeline 7dac92e581e44e55e71325a5059f533a https://www.encodeproject.org/files/ENCFF079FOC/@@download/ENCFF079FOC.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KVX bam alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KWF 374545180 Bing Ren, UCSD 589871b67e94549c0b4a041f0be2c27a https://www.encodeproject.org/files/ENCFF001KVX/@@download/ENCFF001KVX.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KVY bigBed broadPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZE 1975371 Bing Ren, UCSD f1e534fecb7fd602d2c18d206f62a1b5 https://www.encodeproject.org/files/ENCFF001KVY/@@download/ENCFF001KVY.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KVZ bam alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KWG 655731829 Bing Ren, UCSD ee47c2a4ed38522a9e2838087b46324c https://www.encodeproject.org/files/ENCFF001KVZ/@@download/ENCFF001KVZ.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KWA bigWig signal ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KVX, ENCFF001KVZ 58394471 Bing Ren, UCSD b1df311afb7ece427b4310f05ebf51c1 https://www.encodeproject.org/files/ENCFF001KWA/@@download/ENCFF001KWA.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KWF fastq reads ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 438331003 Bing Ren, UCSD bf86172c38d861a3cb175f7dde7b353b https://www.encodeproject.org/files/ENCFF001KWF/@@download/ENCFF001KWF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXE/ released low read length insufficient read depth, control insufficient read depth ENCFF001KWG fastq reads ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 792266924 Bing Ren, UCSD 7ec845d7ac0a03b6dd8fcadbda233c8d https://www.encodeproject.org/files/ENCFF001KWG/@@download/ENCFF001KWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length insufficient read depth, control insufficient read depth ENCFF001XZE bed broadPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KVX, ENCFF001KVZ 1342178 Bing Ren, UCSD ab69fd5a73849fa994bb3a696c664432 https://www.encodeproject.org/files/ENCFF001XZE/@@download/ENCFF001XZE.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF917UYG bam unfiltered alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWF, ENCFF018NEO 509286874 ENCODE Processing Pipeline 90a40eeceb4a57b21758f26753c8f0f3 https://www.encodeproject.org/files/ENCFF917UYG/@@download/ENCFF917UYG.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF830VBM bam unfiltered alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWG, ENCFF018NEO 897145933 ENCODE Processing Pipeline ce2ed5a52af77d3a632931cf45a0f300 https://www.encodeproject.org/files/ENCFF830VBM/@@download/ENCFF830VBM.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF245DAJ bam alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWG, ENCFF018NEO 638605009 ENCODE Processing Pipeline 82b2b247c032293d32a70e634e6cfdc2 https://www.encodeproject.org/files/ENCFF245DAJ/@@download/ENCFF245DAJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF592SHT bam alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWF, ENCFF018NEO 377210616 ENCODE Processing Pipeline ae0b04c5794b5cc8bf10ffe2c387f514 https://www.encodeproject.org/files/ENCFF592SHT/@@download/ENCFF592SHT.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF207TUQ bed narrowPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF592SHT, ENCFF942MHC 1935601 ENCODE Processing Pipeline 500f2db1b734b6ccbd710b76616c26b0 https://www.encodeproject.org/files/ENCFF207TUQ/@@download/ENCFF207TUQ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF807QHO bed narrowPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF245DAJ, ENCFF288QPC, ENCFF942MHC 1227550 ENCODE Processing Pipeline 69a197d54911ef7fd93d2d1e7c56453c https://www.encodeproject.org/files/ENCFF807QHO/@@download/ENCFF807QHO.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF772MOT bigBed narrowPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF207TUQ 4645452 ENCODE Processing Pipeline 2d309cab078ca51f13f96fcf0ee0c97b https://www.encodeproject.org/files/ENCFF772MOT/@@download/ENCFF772MOT.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF675XQS bed narrowPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF245DAJ, ENCFF288QPC, ENCFF592SHT, ENCFF942MHC 1174332 ENCODE Processing Pipeline 017b8db023932f6857664e36b5082591 https://www.encodeproject.org/files/ENCFF675XQS/@@download/ENCFF675XQS.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF601UDW bigBed narrowPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF675XQS 2973938 ENCODE Processing Pipeline 6096dc4ec81511786a8cdabdaad943df https://www.encodeproject.org/files/ENCFF601UDW/@@download/ENCFF601UDW.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF345BCA bigBed narrowPeak peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF807QHO 3121069 ENCODE Processing Pipeline 67feac0d1f5d11c8e15fe466dede59ef https://www.encodeproject.org/files/ENCFF345BCA/@@download/ENCFF345BCA.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF727VUT bigWig signal p-value ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF592SHT, ENCFF942MHC 205543289 ENCODE Processing Pipeline 41026b6e5a12fff0febc73331cadf9ed https://www.encodeproject.org/files/ENCFF727VUT/@@download/ENCFF727VUT.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF490LDV bigWig signal p-value ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF245DAJ, ENCFF288QPC, ENCFF942MHC 206770679 ENCODE Processing Pipeline 01c32229ef685f1595739386bae31da8 https://www.encodeproject.org/files/ENCFF490LDV/@@download/ENCFF490LDV.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF862WVF bigWig signal p-value ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF245DAJ, ENCFF288QPC, ENCFF592SHT, ENCFF942MHC 193297777 ENCODE Processing Pipeline 4c88a1f48a9452a0be2eb308a724a45c https://www.encodeproject.org/files/ENCFF862WVF/@@download/ENCFF862WVF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF008OPP bigWig fold change over control ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF245DAJ, ENCFF288QPC, ENCFF942MHC 247551140 ENCODE Processing Pipeline 1e1d3bf201afdf20b11e9d05496d1886 https://www.encodeproject.org/files/ENCFF008OPP/@@download/ENCFF008OPP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF023YBI bigWig fold change over control ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF592SHT, ENCFF942MHC 166044158 ENCODE Processing Pipeline 1c2b972fb7315b057ed0fff1864d17db https://www.encodeproject.org/files/ENCFF023YBI/@@download/ENCFF023YBI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF449YGK bed narrowPeak replicated peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF207TUQ, ENCFF675XQS, ENCFF807QHO 1179165 ENCODE Processing Pipeline a780f6504219940c3a3ef78a59678dcb https://www.encodeproject.org/files/ENCFF449YGK/@@download/ENCFF449YGK.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF073HRX bigWig fold change over control ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF245DAJ, ENCFF288QPC, ENCFF592SHT, ENCFF942MHC 366329410 ENCODE Processing Pipeline 2348ba5746db0f32752ce75ac354d89c https://www.encodeproject.org/files/ENCFF073HRX/@@download/ENCFF073HRX.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF407VYO bigBed narrowPeak replicated peaks ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF449YGK 2473870 ENCODE Processing Pipeline 40fcfec7e3e2c9bd673e1d865d2b9307 https://www.encodeproject.org/files/ENCFF407VYO/@@download/ENCFF407VYO.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF850TBX fastq reads ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2580918839 Bing Ren, UCSD 5eeadd76bd97376d9148706fb02f43f9 SRA:SRR3651888 https://www.encodeproject.org/files/ENCFF850TBX/@@download/ENCFF850TBX.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released mild to moderate bottlenecking, inconsistent platforms ENCFF702RBP fastq reads ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2078868170 Bing Ren, UCSD de8dba119aeaa549f4db68a56e845f9b SRA:SRR3651889 https://www.encodeproject.org/files/ENCFF702RBP/@@download/ENCFF702RBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released mild to moderate bottlenecking, inconsistent platforms ENCFF744SXK bam alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF850TBX 1766970146 ENCODE Processing Pipeline 6811d33ad25b7be4ae10fcfc11b922a5 https://www.encodeproject.org/files/ENCFF744SXK/@@download/ENCFF744SXK.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF746YBI bam alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF702RBP, ENCFF806TVZ 1443440741 ENCODE Processing Pipeline 837c3cb62e071197c6d1127362cec85c https://www.encodeproject.org/files/ENCFF746YBI/@@download/ENCFF746YBI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF356WZA bed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF746YBI 552730 ENCODE Processing Pipeline 9e80d16daea8fb2f1a89e96205ac221a https://www.encodeproject.org/files/ENCFF356WZA/@@download/ENCFF356WZA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF112WRV bed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF744SXK, ENCFF746YBI 644476 ENCODE Processing Pipeline b95e5399a49a747670797dead85fa8a0 https://www.encodeproject.org/files/ENCFF112WRV/@@download/ENCFF112WRV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF998KAM bigBed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF356WZA 1755257 ENCODE Processing Pipeline 4d2580e085cbb7329bf189a233e1380f https://www.encodeproject.org/files/ENCFF998KAM/@@download/ENCFF998KAM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF088WSP bigWig signal p-value ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF746YBI 627314214 ENCODE Processing Pipeline dc894205f554d014cfe0913cb6b4400a https://www.encodeproject.org/files/ENCFF088WSP/@@download/ENCFF088WSP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF749IYY bigBed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF135VGZ 1788795 ENCODE Processing Pipeline 76a4ce891753631d6b390fbc12f1c67e https://www.encodeproject.org/files/ENCFF749IYY/@@download/ENCFF749IYY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF135VGZ bed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314ZXJ, ENCFF744SXK 567802 ENCODE Processing Pipeline 9c3918a64dc09eb71d55789fba93f8d5 https://www.encodeproject.org/files/ENCFF135VGZ/@@download/ENCFF135VGZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF516MQN bigBed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF112WRV 1879074 ENCODE Processing Pipeline fb3561c3d9d3b037a1e20f1dbcbf67fc https://www.encodeproject.org/files/ENCFF516MQN/@@download/ENCFF516MQN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF894FZB bigWig signal p-value ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314ZXJ, ENCFF744SXK 649306924 ENCODE Processing Pipeline 007b011289fa0c858a001eccd81860f0 https://www.encodeproject.org/files/ENCFF894FZB/@@download/ENCFF894FZB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF011KLV bigWig signal p-value ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF744SXK, ENCFF746YBI 1018646254 ENCODE Processing Pipeline 82127f8219a33783ad6be7917a24a7d5 https://www.encodeproject.org/files/ENCFF011KLV/@@download/ENCFF011KLV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF252TLX bigWig fold change over control ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF746YBI 530402579 ENCODE Processing Pipeline 7931565a9fa7a2a18b931968ce05139c https://www.encodeproject.org/files/ENCFF252TLX/@@download/ENCFF252TLX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF420KMN bigWig fold change over control ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314ZXJ, ENCFF744SXK 593282271 ENCODE Processing Pipeline 44936d3b18d27350479ba22e0e1b1de7 https://www.encodeproject.org/files/ENCFF420KMN/@@download/ENCFF420KMN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF990JVQ bigWig fold change over control ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF744SXK, ENCFF746YBI 1065034503 ENCODE Processing Pipeline b09ab26f66aec3d36210e7ff8b2aa365 https://www.encodeproject.org/files/ENCFF990JVQ/@@download/ENCFF990JVQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF417CFI bigBed narrowPeak replicated peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF165NLE 1619570 ENCODE Processing Pipeline 456e79306d388d21a1f07bd40871fc06 https://www.encodeproject.org/files/ENCFF417CFI/@@download/ENCFF417CFI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF165NLE bed narrowPeak replicated peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF112WRV, ENCFF135VGZ, ENCFF356WZA 709308 ENCODE Processing Pipeline aa36b6013605c75a882d010f76b3dd42 https://www.encodeproject.org/files/ENCFF165NLE/@@download/ENCFF165NLE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF922MCG bam unfiltered alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF702RBP 2316799646 ENCODE Processing Pipeline 3df90cbe4d74e82787976f88f01cdda7 https://www.encodeproject.org/files/ENCFF922MCG/@@download/ENCFF922MCG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF819GQK bam unfiltered alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF850TBX 2872980823 ENCODE Processing Pipeline ad0382ae58a2f39cdb7ee869a85b7bb6 https://www.encodeproject.org/files/ENCFF819GQK/@@download/ENCFF819GQK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF884HYZ bam alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF702RBP 1443163518 ENCODE Processing Pipeline 65dacd2e372487d760316a72f62a2143 https://www.encodeproject.org/files/ENCFF884HYZ/@@download/ENCFF884HYZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF955BLP bam alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF850TBX 1766646808 ENCODE Processing Pipeline 4675f07675774b3c3bb8df7eb8c6eb34 https://www.encodeproject.org/files/ENCFF955BLP/@@download/ENCFF955BLP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF251NOB bed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF615JIE, ENCFF884HYZ 556294 ENCODE Processing Pipeline d49b96c2499fb1e47bc54d7ca19dd111 https://www.encodeproject.org/files/ENCFF251NOB/@@download/ENCFF251NOB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF623JQO bed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF955BLP 569986 ENCODE Processing Pipeline c175b874b5fb7816eb91d0f7d35f7424 https://www.encodeproject.org/files/ENCFF623JQO/@@download/ENCFF623JQO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF871LSK bigBed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF251NOB 1758616 ENCODE Processing Pipeline fa33d0c475bb21946391b6d75e0a270b https://www.encodeproject.org/files/ENCFF871LSK/@@download/ENCFF871LSK.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF618FRJ bed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF615JIE, ENCFF884HYZ, ENCFF955BLP 650316 ENCODE Processing Pipeline 604654582badc4f550cb3304682c2dec https://www.encodeproject.org/files/ENCFF618FRJ/@@download/ENCFF618FRJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF267DRN bigBed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF623JQO 1788179 ENCODE Processing Pipeline 91c6685c35b6bf2bf039336a91ee89f3 https://www.encodeproject.org/files/ENCFF267DRN/@@download/ENCFF267DRN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF147NQV bigBed narrowPeak peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF618FRJ 1875265 ENCODE Processing Pipeline a1506968cb1886824c6b977f501d3d8c https://www.encodeproject.org/files/ENCFF147NQV/@@download/ENCFF147NQV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF281GHA bigWig signal p-value ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF615JIE, ENCFF884HYZ 583530139 ENCODE Processing Pipeline 1a18dd21e2cd8cbdaf3e32cf03a897d9 https://www.encodeproject.org/files/ENCFF281GHA/@@download/ENCFF281GHA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF541PYR bigWig signal p-value ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF955BLP 545006971 ENCODE Processing Pipeline c98bc54d822773b037283fb6ca6db5d0 https://www.encodeproject.org/files/ENCFF541PYR/@@download/ENCFF541PYR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF954GTO bigWig signal p-value ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF615JIE, ENCFF884HYZ, ENCFF955BLP 1038110762 ENCODE Processing Pipeline 7100f6e8a599e8865914238651be8138 https://www.encodeproject.org/files/ENCFF954GTO/@@download/ENCFF954GTO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF915UEI bigWig fold change over control ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF615JIE, ENCFF884HYZ 568273018 ENCODE Processing Pipeline 43c8676192fb03301cc6eb8d6734c2ec https://www.encodeproject.org/files/ENCFF915UEI/@@download/ENCFF915UEI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF898AEO bigWig fold change over control ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF955BLP 633423084 ENCODE Processing Pipeline 78a0d1495c642c60781da83d72fd3d9b https://www.encodeproject.org/files/ENCFF898AEO/@@download/ENCFF898AEO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF576SVQ bigWig fold change over control ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF615JIE, ENCFF884HYZ, ENCFF955BLP 1164164782 ENCODE Processing Pipeline d0e683a48e534b46f1d49f200087337a https://www.encodeproject.org/files/ENCFF576SVQ/@@download/ENCFF576SVQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF175FGU bed narrowPeak replicated peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF251NOB, ENCFF618FRJ, ENCFF623JQO 708709 ENCODE Processing Pipeline 08eeb2687d7962535d568b19f9156def https://www.encodeproject.org/files/ENCFF175FGU/@@download/ENCFF175FGU.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF806JBM bigBed narrowPeak replicated peaks ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF175FGU 1616666 ENCODE Processing Pipeline 18ef5c5e9fdf0b4ff59d81fac553e73b https://www.encodeproject.org/files/ENCFF806JBM/@@download/ENCFF806JBM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF511ESM fastq reads ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2340580265 Bing Ren, UCSD 26da35680549c6547a13e7f83a35f84a SRA:SRR3651971 https://www.encodeproject.org/files/ENCFF511ESM/@@download/ENCFF511ESM.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF634EPK fastq reads ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2595387175 Bing Ren, UCSD a05827b3e79044ef0c68f7b78811303e SRA:SRR3651974 https://www.encodeproject.org/files/ENCFF634EPK/@@download/ENCFF634EPK.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF949WTQ bam alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF634EPK, ENCFF806TVZ 2150625488 ENCODE Processing Pipeline 6aab84b0de3896ffd6e0dfe92cf7f4ea https://www.encodeproject.org/files/ENCFF949WTQ/@@download/ENCFF949WTQ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF029DGH bam alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF511ESM, ENCFF806TVZ 1959300123 ENCODE Processing Pipeline 3a56458f06ef83f43f3f37e0ecea8214 https://www.encodeproject.org/files/ENCFF029DGH/@@download/ENCFF029DGH.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF263OPF fastq reads ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 434309982 Bing Ren, UCSD a2008255c9f09d989a3f497d2d119a31 SRA:SRR3651972 https://www.encodeproject.org/files/ENCFF263OPF/@@download/ENCFF263OPF.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF347ALK fastq reads ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 342042940 Bing Ren, UCSD 2fde898cbb0056f299b777e470d496d0 SRA:SRR3651975 https://www.encodeproject.org/files/ENCFF347ALK/@@download/ENCFF347ALK.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF146GFU fastq reads ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 206484792 Bing Ren, UCSD 45f7cb1acaa28d801cd79005ee177646 SRA:SRR3651976 https://www.encodeproject.org/files/ENCFF146GFU/@@download/ENCFF146GFU.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF145WXV fastq reads ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 509071456 Bing Ren, UCSD 539d6b818167deb623566c7a72fefd9e SRA:SRR3651973 https://www.encodeproject.org/files/ENCFF145WXV/@@download/ENCFF145WXV.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF079JAD bam alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF145WXV, ENCFF263OPF, ENCFF511ESM 2914012161 ENCODE Processing Pipeline 5e112f0822adcdd9b28bd0221fdae1b8 https://www.encodeproject.org/files/ENCFF079JAD/@@download/ENCFF079JAD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF031BIV bam unfiltered alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018NEO, ENCFF146GFU, ENCFF347ALK, ENCFF634EPK 4006242959 ENCODE Processing Pipeline b8fce65ee01fe32b414f4066396b1ebb https://www.encodeproject.org/files/ENCFF031BIV/@@download/ENCFF031BIV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF697KWR bam unfiltered alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF018NEO, ENCFF145WXV, ENCFF263OPF, ENCFF511ESM 4244634376 ENCODE Processing Pipeline 26c458114afec773f1a5586eb2fbdc26 https://www.encodeproject.org/files/ENCFF697KWR/@@download/ENCFF697KWR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF269JKO bam alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF146GFU, ENCFF347ALK, ENCFF634EPK 2720002082 ENCODE Processing Pipeline fd19c3b169c10cd3773560bba224b9a8 https://www.encodeproject.org/files/ENCFF269JKO/@@download/ENCFF269JKO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001ZRH fastq reads ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 649883174 Bing Ren, UCSD 3fa5c85386834564eb88efdf6e3e383a SRA:SRR3653219 https://www.encodeproject.org/files/ENCFF001ZRH/@@download/ENCFF001ZRH.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001ZRI fastq reads ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 929326596 Bing Ren, UCSD f8119c86bb3c8d38bd385d975015e782 SRA:SRR3653218 https://www.encodeproject.org/files/ENCFF001ZRI/@@download/ENCFF001ZRI.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, mild to moderate bottlenecking, low read depth ENCFF711EAX bam alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRI, ENCFF806TVZ 690521220 ENCODE Processing Pipeline 273860a69ce67525bcb916fe0f3d97d2 https://www.encodeproject.org/files/ENCFF711EAX/@@download/ENCFF711EAX.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF091QRM bam alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRH, ENCFF806TVZ 499272298 ENCODE Processing Pipeline 5318aec1eac6d1187fa047633aafd525 https://www.encodeproject.org/files/ENCFF091QRM/@@download/ENCFF091QRM.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF993EXT bed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF091QRM, ENCFF223QEB, ENCFF976TWF 1215485 ENCODE Processing Pipeline 327331950ca667bdda0a9e49b18cf1ad https://www.encodeproject.org/files/ENCFF993EXT/@@download/ENCFF993EXT.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF512TSY bigBed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF219DGA 2131044 ENCODE Processing Pipeline f4d0c8ba51bad1e3326e8651a347dff3 https://www.encodeproject.org/files/ENCFF512TSY/@@download/ENCFF512TSY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF613ZWY bigBed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF993EXT 2959806 ENCODE Processing Pipeline 3f2045770be50b75f7cbb93017c533c3 https://www.encodeproject.org/files/ENCFF613ZWY/@@download/ENCFF613ZWY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF219DGA bed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF711EAX, ENCFF976TWF 811772 ENCODE Processing Pipeline 7fb71d8bc89c3353611452083d8a142e https://www.encodeproject.org/files/ENCFF219DGA/@@download/ENCFF219DGA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF109QVK bed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF091QRM, ENCFF223QEB, ENCFF711EAX, ENCFF976TWF 781267 ENCODE Processing Pipeline c6f65227eedd041da84b5624e01130b1 https://www.encodeproject.org/files/ENCFF109QVK/@@download/ENCFF109QVK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF698QTP bigWig signal p-value ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF711EAX, ENCFF976TWF 341906780 ENCODE Processing Pipeline 591f4c74cfda36de33cca83cac589db6 https://www.encodeproject.org/files/ENCFF698QTP/@@download/ENCFF698QTP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF348UEC bigBed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF109QVK 1970227 ENCODE Processing Pipeline 72a07c585b58050e698c394634f74206 https://www.encodeproject.org/files/ENCFF348UEC/@@download/ENCFF348UEC.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF218SZE bigWig signal p-value ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF091QRM, ENCFF223QEB, ENCFF976TWF 295719678 ENCODE Processing Pipeline 3f911a1784c55489d389d9bbcef6f189 https://www.encodeproject.org/files/ENCFF218SZE/@@download/ENCFF218SZE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF718VJD bigWig signal p-value ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF091QRM, ENCFF223QEB, ENCFF711EAX, ENCFF976TWF 507891977 ENCODE Processing Pipeline ac62f63fb6d4da5efd9f59096921f914 https://www.encodeproject.org/files/ENCFF718VJD/@@download/ENCFF718VJD.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF591TGC bigWig fold change over control ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF091QRM, ENCFF223QEB, ENCFF976TWF 275563079 ENCODE Processing Pipeline d245673dc0ddc1ba33cace6470445688 https://www.encodeproject.org/files/ENCFF591TGC/@@download/ENCFF591TGC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF434YLY bigWig fold change over control ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF711EAX, ENCFF976TWF 358289177 ENCODE Processing Pipeline dcf9160c9633e8d699d8ce340b8f9bf7 https://www.encodeproject.org/files/ENCFF434YLY/@@download/ENCFF434YLY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF047WIZ bigWig fold change over control ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF091QRM, ENCFF223QEB, ENCFF711EAX, ENCFF976TWF 505989666 ENCODE Processing Pipeline beb4dd27845459499024687239655c35 https://www.encodeproject.org/files/ENCFF047WIZ/@@download/ENCFF047WIZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF675BVX bigBed narrowPeak replicated peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF176INF 1292027 ENCODE Processing Pipeline c5951096117765a8670c1e87f7b9633e https://www.encodeproject.org/files/ENCFF675BVX/@@download/ENCFF675BVX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF176INF bed narrowPeak replicated peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF109QVK, ENCFF219DGA, ENCFF993EXT 587281 ENCODE Processing Pipeline 9a6e4add9ef3367fc62331b7a0448ce5 https://www.encodeproject.org/files/ENCFF176INF/@@download/ENCFF176INF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF322FON bam unfiltered alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRH, ENCFF018NEO 819430501 ENCODE Processing Pipeline 7c02bb0d73b0702c88dbbafa84801d4c https://www.encodeproject.org/files/ENCFF322FON/@@download/ENCFF322FON.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF422KMB bam unfiltered alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRI, ENCFF018NEO 1176574610 ENCODE Processing Pipeline f707db70034d2f777bf19046a44af9d0 https://www.encodeproject.org/files/ENCFF422KMB/@@download/ENCFF422KMB.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF878QWY bam alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRH, ENCFF018NEO 499145854 ENCODE Processing Pipeline 844600c6baf5ef9c855b8ede2a05306c https://www.encodeproject.org/files/ENCFF878QWY/@@download/ENCFF878QWY.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF586IKN bam alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRI, ENCFF018NEO 690332596 ENCODE Processing Pipeline ec92c472f04fc88770e8e0f65425e518 https://www.encodeproject.org/files/ENCFF586IKN/@@download/ENCFF586IKN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF542UPZ bed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF586IKN, ENCFF903TSE 814317 ENCODE Processing Pipeline 00ba14ea7077e0e093df3f329a490512 https://www.encodeproject.org/files/ENCFF542UPZ/@@download/ENCFF542UPZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF864HBX bed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF878QWY, ENCFF903TSE 1215724 ENCODE Processing Pipeline 45044f055db76031aa0240e88de68a2c https://www.encodeproject.org/files/ENCFF864HBX/@@download/ENCFF864HBX.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF071QOM bed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF563TGK, ENCFF586IKN, ENCFF878QWY, ENCFF903TSE 776829 ENCODE Processing Pipeline 775014dcdb471656f62c50556402e909 https://www.encodeproject.org/files/ENCFF071QOM/@@download/ENCFF071QOM.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF473ALP bigBed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF542UPZ 2139003 ENCODE Processing Pipeline 06af08614fb49d06301112d04268ff3a https://www.encodeproject.org/files/ENCFF473ALP/@@download/ENCFF473ALP.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF897LGB bigBed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF864HBX 2961147 ENCODE Processing Pipeline 7fd4ab334e104f4e877b3a6ab1ac3748 https://www.encodeproject.org/files/ENCFF897LGB/@@download/ENCFF897LGB.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF084FPL bigBed narrowPeak peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF071QOM 1968713 ENCODE Processing Pipeline 567862952d5af12160fc4b393abce76e https://www.encodeproject.org/files/ENCFF084FPL/@@download/ENCFF084FPL.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF203LXK bigWig signal p-value ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF586IKN, ENCFF903TSE 322358605 ENCODE Processing Pipeline d93d2d32389608d620f73471133db56f https://www.encodeproject.org/files/ENCFF203LXK/@@download/ENCFF203LXK.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF626MYV bigWig signal p-value ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF878QWY, ENCFF903TSE 378854935 ENCODE Processing Pipeline 164b290475c792b9e9a1d49b0f27804f https://www.encodeproject.org/files/ENCFF626MYV/@@download/ENCFF626MYV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF615ARX bigWig signal p-value ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF563TGK, ENCFF586IKN, ENCFF878QWY, ENCFF903TSE 514997576 ENCODE Processing Pipeline 92ad98c7e5fdb1e429466f70adec8ccc https://www.encodeproject.org/files/ENCFF615ARX/@@download/ENCFF615ARX.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF336LAW bigWig fold change over control ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF586IKN, ENCFF903TSE 357772991 ENCODE Processing Pipeline 25b3006df172cb35ed4103a6959c17e4 https://www.encodeproject.org/files/ENCFF336LAW/@@download/ENCFF336LAW.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF615BNU bigWig fold change over control ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF878QWY, ENCFF903TSE 274979839 ENCODE Processing Pipeline 73e079c6444c85c118ff5e094a9c8966 https://www.encodeproject.org/files/ENCFF615BNU/@@download/ENCFF615BNU.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF897QOI bigWig fold change over control ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF563TGK, ENCFF586IKN, ENCFF878QWY, ENCFF903TSE 512903479 ENCODE Processing Pipeline 4c31deebbe7377ceaea006208528ff7d https://www.encodeproject.org/files/ENCFF897QOI/@@download/ENCFF897QOI.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF948YFR bed narrowPeak replicated peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF071QOM, ENCFF542UPZ, ENCFF864HBX 597794 ENCODE Processing Pipeline 13ace007fc8624c77fdf7e37c1935024 https://www.encodeproject.org/files/ENCFF948YFR/@@download/ENCFF948YFR.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF495DUH bigBed narrowPeak replicated peaks ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF948YFR 1305127 ENCODE Processing Pipeline f7ace23a125d37575d9ffc140cf9ddea https://www.encodeproject.org/files/ENCFF495DUH/@@download/ENCFF495DUH.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF001KTX bam alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KUI 1499418593 Bing Ren, UCSD a73f10faa95cbcd0351075acaaf3c607 https://www.encodeproject.org/files/ENCFF001KTX/@@download/ENCFF001KTX.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF001KTY bam alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KUG 1482558141 Bing Ren, UCSD 0c4980a1d82d345ff67c7f5b666f3149 https://www.encodeproject.org/files/ENCFF001KTY/@@download/ENCFF001KTY.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF001KTZ bigBed broadPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XYY 2021285 Bing Ren, UCSD 477d2fa793430501869f36a44c7d23b8 https://www.encodeproject.org/files/ENCFF001KTZ/@@download/ENCFF001KTZ.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF001KUB bigWig signal ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KTX, ENCFF001KTY 56782687 Bing Ren, UCSD c0a79acddb6d03a761f4fafb5a86421c https://www.encodeproject.org/files/ENCFF001KUB/@@download/ENCFF001KUB.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF001KUG fastq reads ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1440087262 Bing Ren, UCSD 929d70cf0b50cb32f73a2507f5aac02f https://www.encodeproject.org/files/ENCFF001KUG/@@download/ENCFF001KUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF001KUI fastq reads ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1463352926 Bing Ren, UCSD fb87c2367296dde9ef69da77b48f4d67 https://www.encodeproject.org/files/ENCFF001KUI/@@download/ENCFF001KUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUJ/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF001XYY bed broadPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KTX, ENCFF001KTY 1506607 Bing Ren, UCSD 8b250d430648409528d4f081c3784450 https://www.encodeproject.org/files/ENCFF001XYY/@@download/ENCFF001XYY.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF568PLA bam unfiltered alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KUI, ENCFF018NEO 1614236872 ENCODE Processing Pipeline c0ddb6b91329cc747f1755d207ab5f90 https://www.encodeproject.org/files/ENCFF568PLA/@@download/ENCFF568PLA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF858GRV bam unfiltered alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KUG, ENCFF018NEO 1596239022 ENCODE Processing Pipeline 40f5303e4bf4897c34f7c51a0198f5c7 https://www.encodeproject.org/files/ENCFF858GRV/@@download/ENCFF858GRV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF018PUS bam alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KUI, ENCFF018NEO 957190599 ENCODE Processing Pipeline ddbb5bda1c88c7fdcb6c50819ef9c197 https://www.encodeproject.org/files/ENCFF018PUS/@@download/ENCFF018PUS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF471NJK bam alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KUG, ENCFF018NEO 1025119981 ENCODE Processing Pipeline d5f2632ea7590581b33457b5ee42e030 https://www.encodeproject.org/files/ENCFF471NJK/@@download/ENCFF471NJK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF793YLD bed narrowPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF018PUS, ENCFF242QZL, ENCFF471NJK, ENCFF769FTV 4538490 ENCODE Processing Pipeline bdb8616ac7bdfb9bc486ea6eb5b18a76 https://www.encodeproject.org/files/ENCFF793YLD/@@download/ENCFF793YLD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF526CWW bigBed narrowPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF092WBN 10594346 ENCODE Processing Pipeline 0ea4bd47847a0caef44dadb1363e170d https://www.encodeproject.org/files/ENCFF526CWW/@@download/ENCFF526CWW.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF092WBN bed narrowPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF018PUS, ENCFF242QZL, ENCFF769FTV 4566235 ENCODE Processing Pipeline 948dbf6042a14ac342c8d187e055eee4 https://www.encodeproject.org/files/ENCFF092WBN/@@download/ENCFF092WBN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF332OFU bed narrowPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF242QZL, ENCFF471NJK 3889582 ENCODE Processing Pipeline f2867fffc5e85b95c1ee6cf9cf8808ea https://www.encodeproject.org/files/ENCFF332OFU/@@download/ENCFF332OFU.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF664JNM bigBed narrowPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF332OFU 9102407 ENCODE Processing Pipeline aa918b11f232f52626d464f94f5f2a6e https://www.encodeproject.org/files/ENCFF664JNM/@@download/ENCFF664JNM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF060WKT bigBed narrowPeak peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF793YLD 10268823 ENCODE Processing Pipeline c638fcf62a9bdf219a53a26fbf6b5bfd https://www.encodeproject.org/files/ENCFF060WKT/@@download/ENCFF060WKT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF868IFX bigWig signal p-value ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF018PUS, ENCFF242QZL, ENCFF769FTV 535282974 ENCODE Processing Pipeline 30799ef573a5a4e5c99b783ecd237d47 https://www.encodeproject.org/files/ENCFF868IFX/@@download/ENCFF868IFX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF746YSR bigWig signal p-value ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF242QZL, ENCFF471NJK 399239450 ENCODE Processing Pipeline 489dd60d49d9d87790d7e6c6bce9c3fa https://www.encodeproject.org/files/ENCFF746YSR/@@download/ENCFF746YSR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF521EKV bigWig signal p-value ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF018PUS, ENCFF242QZL, ENCFF471NJK, ENCFF769FTV 738572074 ENCODE Processing Pipeline ab41172861d525fbce50c297a2ea7111 https://www.encodeproject.org/files/ENCFF521EKV/@@download/ENCFF521EKV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF450NWF bigWig fold change over control ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF018PUS, ENCFF242QZL, ENCFF769FTV 449550143 ENCODE Processing Pipeline aa11104f3c087d2b247852d1bb9e6c67 https://www.encodeproject.org/files/ENCFF450NWF/@@download/ENCFF450NWF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF179NAM bigWig fold change over control ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF242QZL, ENCFF471NJK 369206182 ENCODE Processing Pipeline 51849621a73c2eee6f3506a721a2ebef https://www.encodeproject.org/files/ENCFF179NAM/@@download/ENCFF179NAM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF204STH bigWig fold change over control ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF018PUS, ENCFF242QZL, ENCFF471NJK, ENCFF769FTV 744863081 ENCODE Processing Pipeline 46ab334477336df4df1931dae76f6912 https://www.encodeproject.org/files/ENCFF204STH/@@download/ENCFF204STH.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF176RKQ bed narrowPeak replicated peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF092WBN, ENCFF332OFU, ENCFF793YLD 4422150 ENCODE Processing Pipeline 5c8f510f9070861ab093b2ec94caa3b5 https://www.encodeproject.org/files/ENCFF176RKQ/@@download/ENCFF176RKQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF521TWD bigBed narrowPeak replicated peaks ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF176RKQ 7559718 ENCODE Processing Pipeline 14574449e5e3836869944377af5adf91 https://www.encodeproject.org/files/ENCFF521TWD/@@download/ENCFF521TWD.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF001KCM bam alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KCS 231067843 Bing Ren, UCSD 1a521135788352b25986a0413fa4c4c6 https://www.encodeproject.org/files/ENCFF001KCM/@@download/ENCFF001KCM.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001KCN bigBed broadPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XWN 421576 Bing Ren, UCSD c1168d1192697013b22fcea591f9c212 https://www.encodeproject.org/files/ENCFF001KCN/@@download/ENCFF001KCN.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001KCO bam alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KCU 304549872 Bing Ren, UCSD ea58b66824d06dd51c8e18bf71003a88 https://www.encodeproject.org/files/ENCFF001KCO/@@download/ENCFF001KCO.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001KCP bigWig signal ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KCM, ENCFF001KCO 40758359 Bing Ren, UCSD 1d95109f70819fe6944d5aebfbb21367 https://www.encodeproject.org/files/ENCFF001KCP/@@download/ENCFF001KCP.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001KCS fastq reads ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 784937349 Bing Ren, UCSD a71fc242322a32109d0d25a361a125ef https://www.encodeproject.org/files/ENCFF001KCS/@@download/ENCFF001KCS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KCX/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001KCU fastq reads ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 831859883 Bing Ren, UCSD ee296bbb6c6bfeacb5fc02dabc126005 https://www.encodeproject.org/files/ENCFF001KCU/@@download/ENCFF001KCU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KDF/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001XWN bed broadPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KCM, ENCFF001KCO 279372 Bing Ren, UCSD 73925a087466b6e71258bbbe50ed318d https://www.encodeproject.org/files/ENCFF001XWN/@@download/ENCFF001XWN.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF173JHS bam unfiltered alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCS, ENCFF018NEO 773888302 ENCODE Processing Pipeline 047653bdd6c0fabc264c049bb00f25f5 https://www.encodeproject.org/files/ENCFF173JHS/@@download/ENCFF173JHS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF942CHJ bam unfiltered alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KCU, ENCFF018NEO 859718444 ENCODE Processing Pipeline d9517bd2ca3308e406b3f44287a6d60a https://www.encodeproject.org/files/ENCFF942CHJ/@@download/ENCFF942CHJ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF553HUH bam alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCS, ENCFF018NEO 242826036 ENCODE Processing Pipeline 14193095dbfb83a56a350dd172455365 https://www.encodeproject.org/files/ENCFF553HUH/@@download/ENCFF553HUH.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF487BLR bam alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KCU, ENCFF018NEO 401835145 ENCODE Processing Pipeline 5d1217032ada3eff969e42541b109e34 https://www.encodeproject.org/files/ENCFF487BLR/@@download/ENCFF487BLR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF170SOG bigBed narrowPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF249ECI 3911203 ENCODE Processing Pipeline baea3fd3822189ce8e2dad0a70c767b4 https://www.encodeproject.org/files/ENCFF170SOG/@@download/ENCFF170SOG.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF388VVN bed narrowPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF553HUH, ENCFF555HBY, ENCFF745XER 817444 ENCODE Processing Pipeline 7a0f733a7c7e9288358bdd7b4541fc98 https://www.encodeproject.org/files/ENCFF388VVN/@@download/ENCFF388VVN.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF209GIT bed narrowPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF487BLR, ENCFF553HUH, ENCFF555HBY, ENCFF745XER 1063163 ENCODE Processing Pipeline af1571bb1f9a34316a541c688f68b645 https://www.encodeproject.org/files/ENCFF209GIT/@@download/ENCFF209GIT.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF249ECI bed narrowPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF487BLR, ENCFF555HBY, ENCFF745XER 1407164 ENCODE Processing Pipeline 9a882185a644cc80ac9fb2bcb328cb0e https://www.encodeproject.org/files/ENCFF249ECI/@@download/ENCFF249ECI.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF489WJN bigBed narrowPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF388VVN 2401010 ENCODE Processing Pipeline d7051a9a3a875e51a11533915eff21a8 https://www.encodeproject.org/files/ENCFF489WJN/@@download/ENCFF489WJN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF116PBV bigBed narrowPeak peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF209GIT 2907303 ENCODE Processing Pipeline 155c6b3c299522ed74896e6321fb510c https://www.encodeproject.org/files/ENCFF116PBV/@@download/ENCFF116PBV.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF492ILZ bigWig signal p-value ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF553HUH, ENCFF555HBY, ENCFF745XER 277513078 ENCODE Processing Pipeline 742905c2e433aee04f676a8c20046cc9 https://www.encodeproject.org/files/ENCFF492ILZ/@@download/ENCFF492ILZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF055ZNG bigWig signal p-value ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF487BLR, ENCFF555HBY, ENCFF745XER 305582625 ENCODE Processing Pipeline 1a7728949ac856e2d2d97057a6088f67 https://www.encodeproject.org/files/ENCFF055ZNG/@@download/ENCFF055ZNG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF214XIO bigWig signal p-value ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF487BLR, ENCFF553HUH, ENCFF555HBY, ENCFF745XER 348731749 ENCODE Processing Pipeline d8e61f8812f31437c413adaa891b0237 https://www.encodeproject.org/files/ENCFF214XIO/@@download/ENCFF214XIO.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF134AXJ bigWig fold change over control ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF553HUH, ENCFF555HBY, ENCFF745XER 97251866 ENCODE Processing Pipeline d47d26f8e14d4f03e93636c400264514 https://www.encodeproject.org/files/ENCFF134AXJ/@@download/ENCFF134AXJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF858RBK bigWig fold change over control ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF487BLR, ENCFF555HBY, ENCFF745XER 145121872 ENCODE Processing Pipeline 48eea19aa0ed065f8a09552eedb8bb1d https://www.encodeproject.org/files/ENCFF858RBK/@@download/ENCFF858RBK.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF652BWR bigWig fold change over control ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF487BLR, ENCFF553HUH, ENCFF555HBY, ENCFF745XER 198462002 ENCODE Processing Pipeline 92162930c7edd61d577d43f0f78ab45c https://www.encodeproject.org/files/ENCFF652BWR/@@download/ENCFF652BWR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF762KNE bed narrowPeak replicated peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF209GIT, ENCFF249ECI, ENCFF388VVN 1058082 ENCODE Processing Pipeline ac4e69dca8c400317cf6b3b5d90aca58 https://www.encodeproject.org/files/ENCFF762KNE/@@download/ENCFF762KNE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF847BEL bigBed narrowPeak replicated peaks ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF762KNE 2210005 ENCODE Processing Pipeline 663f22d6633663a39b316ed8983caef6 https://www.encodeproject.org/files/ENCFF847BEL/@@download/ENCFF847BEL.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF002BXC fastq reads ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1310442605 Bing Ren, UCSD ff6c032eaff5639574e1a60f17edea16 SRA:SRR3652453 https://www.encodeproject.org/files/ENCFF002BXC/@@download/ENCFF002BXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXR/ released low read length ENCFF002BWZ fastq reads ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1264144531 Bing Ren, UCSD ae6950066e8908ba908d55fd40bdd089 SRA:SRR3652452 https://www.encodeproject.org/files/ENCFF002BWZ/@@download/ENCFF002BWZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXT/ released low read length ENCFF936OMD bam alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWZ, ENCFF806TVZ 1010148183 ENCODE Processing Pipeline 5f013e8b4db73122ed680b988ab87f61 https://www.encodeproject.org/files/ENCFF936OMD/@@download/ENCFF936OMD.bam mm10-minimal archived low read length ENCFF138EQI bam alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXC, ENCFF806TVZ 1023088322 ENCODE Processing Pipeline 8e0b34f557ff87fc9473b09e5be50389 https://www.encodeproject.org/files/ENCFF138EQI/@@download/ENCFF138EQI.bam mm10-minimal archived low read length ENCFF034WPU bigBed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF035XUB 2003773 ENCODE Processing Pipeline 5fc7c158ac54d57adce6fb474ef20cc5 https://www.encodeproject.org/files/ENCFF034WPU/@@download/ENCFF034WPU.bigBed mm10-minimal archived low read length ENCFF035XUB bed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF936OMD 633733 ENCODE Processing Pipeline 8f5231f27d5e68b73a493b8eab52f43e https://www.encodeproject.org/files/ENCFF035XUB/@@download/ENCFF035XUB.bed.gz mm10-minimal archived low read length ENCFF021HLS bed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF138EQI, ENCFF461NAJ, ENCFF720BSQ, ENCFF936OMD 663902 ENCODE Processing Pipeline ed9dfe570633cef268b05c0739ef48e9 https://www.encodeproject.org/files/ENCFF021HLS/@@download/ENCFF021HLS.bed.gz mm10-minimal archived low read length ENCFF069PDN bigBed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF021HLS 2018371 ENCODE Processing Pipeline c8b61e781862f68cfac27cff45c199bb https://www.encodeproject.org/files/ENCFF069PDN/@@download/ENCFF069PDN.bigBed mm10-minimal archived low read length ENCFF065QHA bed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF138EQI, ENCFF461NAJ, ENCFF720BSQ 646475 ENCODE Processing Pipeline 7e21fc5144dd58c2b31a4cb8125c3f48 https://www.encodeproject.org/files/ENCFF065QHA/@@download/ENCFF065QHA.bed.gz mm10-minimal archived low read length ENCFF761SNX bigBed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF065QHA 2010091 ENCODE Processing Pipeline 1c1a92ca10e0454f75e0cf38099eddbe https://www.encodeproject.org/files/ENCFF761SNX/@@download/ENCFF761SNX.bigBed mm10-minimal archived low read length ENCFF229AIN bigWig signal p-value ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF138EQI, ENCFF461NAJ, ENCFF720BSQ 605860296 ENCODE Processing Pipeline fb601f5f2789068d93abfab049c8c2e4 https://www.encodeproject.org/files/ENCFF229AIN/@@download/ENCFF229AIN.bigWig mm10-minimal archived low read length ENCFF008WKI bigWig signal p-value ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF936OMD 358250297 ENCODE Processing Pipeline c936f2105ec605d11f488beb4233272b https://www.encodeproject.org/files/ENCFF008WKI/@@download/ENCFF008WKI.bigWig mm10-minimal archived low read length ENCFF696QII bigWig fold change over control ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF138EQI, ENCFF461NAJ, ENCFF720BSQ 489689904 ENCODE Processing Pipeline 479cecd3257d136a0e4632c938ee7557 https://www.encodeproject.org/files/ENCFF696QII/@@download/ENCFF696QII.bigWig mm10-minimal archived low read length ENCFF472RTT bigWig signal p-value ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF138EQI, ENCFF461NAJ, ENCFF720BSQ, ENCFF936OMD 749723851 ENCODE Processing Pipeline 792a312ae28cce26420a0b395dca2d2b https://www.encodeproject.org/files/ENCFF472RTT/@@download/ENCFF472RTT.bigWig mm10-minimal archived low read length ENCFF216CFZ bigWig fold change over control ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF936OMD 381469140 ENCODE Processing Pipeline 2971b7837a99fb3218a56943baf868b4 https://www.encodeproject.org/files/ENCFF216CFZ/@@download/ENCFF216CFZ.bigWig mm10-minimal archived low read length ENCFF730SEV bigBed narrowPeak replicated peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF169PMN 1783684 ENCODE Processing Pipeline 77f0331bb03cf6ccdce71052109be170 https://www.encodeproject.org/files/ENCFF730SEV/@@download/ENCFF730SEV.bigBed mm10-minimal archived low read length ENCFF629FQE bigWig fold change over control ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF138EQI, ENCFF461NAJ, ENCFF720BSQ, ENCFF936OMD 743077150 ENCODE Processing Pipeline 305f3824e24056ecb95d0488075b6cf1 https://www.encodeproject.org/files/ENCFF629FQE/@@download/ENCFF629FQE.bigWig mm10-minimal archived low read length ENCFF169PMN bed narrowPeak replicated peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF021HLS, ENCFF035XUB, ENCFF065QHA 775239 ENCODE Processing Pipeline 8b464a495bb5ce13a5f4f790555a3348 https://www.encodeproject.org/files/ENCFF169PMN/@@download/ENCFF169PMN.bed.gz mm10-minimal archived low read length ENCFF914YRE bam unfiltered alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXC, ENCFF018NEO 1584087097 ENCODE Processing Pipeline 19f317d2b8ee93df439d91632fbc49fd https://www.encodeproject.org/files/ENCFF914YRE/@@download/ENCFF914YRE.bam mm10 released low read length ENCFF877BPD bam unfiltered alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWZ, ENCFF018NEO 1548478688 ENCODE Processing Pipeline ac4b48b5210b96b79415e7e7f57505fc https://www.encodeproject.org/files/ENCFF877BPD/@@download/ENCFF877BPD.bam mm10 released low read length ENCFF569VLD bam alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWZ, ENCFF018NEO 1009949060 ENCODE Processing Pipeline bc403e803a0f8f4c8086fe8a64436766 https://www.encodeproject.org/files/ENCFF569VLD/@@download/ENCFF569VLD.bam mm10 released low read length ENCFF053WYD bam alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXC, ENCFF018NEO 1022899356 ENCODE Processing Pipeline 11ba33ee6b76e30794f259aecb82b668 https://www.encodeproject.org/files/ENCFF053WYD/@@download/ENCFF053WYD.bam mm10 released low read length ENCFF319LRG bed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF053WYD, ENCFF568KLX, ENCFF631VBQ 646371 ENCODE Processing Pipeline 5f0cb69fe5cb29fda6b8586d75962ecf https://www.encodeproject.org/files/ENCFF319LRG/@@download/ENCFF319LRG.bed.gz mm10 released low read length ENCFF853ALM bed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF569VLD, ENCFF631VBQ 633866 ENCODE Processing Pipeline 043d6fb120cbe2ab0a7d9674053fb79e https://www.encodeproject.org/files/ENCFF853ALM/@@download/ENCFF853ALM.bed.gz mm10 released low read length ENCFF686SHH bed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF053WYD, ENCFF568KLX, ENCFF569VLD, ENCFF631VBQ 664090 ENCODE Processing Pipeline 76353aa1a8589fe4d9c3fccf15e6e89c https://www.encodeproject.org/files/ENCFF686SHH/@@download/ENCFF686SHH.bed.gz mm10 released low read length ENCFF693EMN bigBed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF319LRG 2012091 ENCODE Processing Pipeline 39e328a9aedb55d4e3f649a2aeb70aa1 https://www.encodeproject.org/files/ENCFF693EMN/@@download/ENCFF693EMN.bigBed mm10 released low read length ENCFF249KNX bigBed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF853ALM 2005918 ENCODE Processing Pipeline 489c628966bc798daa8a2e3aaf4e92b8 https://www.encodeproject.org/files/ENCFF249KNX/@@download/ENCFF249KNX.bigBed mm10 released low read length ENCFF748MYE bigBed narrowPeak peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF686SHH 2020296 ENCODE Processing Pipeline 4ae0a1248fd5ff44cfe9c6fbe86ac5d7 https://www.encodeproject.org/files/ENCFF748MYE/@@download/ENCFF748MYE.bigBed mm10 released low read length ENCFF781SOL bigWig signal p-value ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF053WYD, ENCFF568KLX, ENCFF631VBQ 582845477 ENCODE Processing Pipeline a40748c28a9ce51e754a999044a77346 https://www.encodeproject.org/files/ENCFF781SOL/@@download/ENCFF781SOL.bigWig mm10 released low read length ENCFF603MJB bigWig signal p-value ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF569VLD, ENCFF631VBQ 336257190 ENCODE Processing Pipeline 355c468db4311cea214e89069863bdd6 https://www.encodeproject.org/files/ENCFF603MJB/@@download/ENCFF603MJB.bigWig mm10 released low read length ENCFF168YXQ bigWig signal p-value ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF053WYD, ENCFF568KLX, ENCFF569VLD, ENCFF631VBQ 749386564 ENCODE Processing Pipeline df0504c6fe099621645db8593e252f36 https://www.encodeproject.org/files/ENCFF168YXQ/@@download/ENCFF168YXQ.bigWig mm10 released low read length ENCFF632IET bigWig fold change over control ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF053WYD, ENCFF568KLX, ENCFF631VBQ 490640312 ENCODE Processing Pipeline d59ce9c9b73d96da058aab47b4c1716d https://www.encodeproject.org/files/ENCFF632IET/@@download/ENCFF632IET.bigWig mm10 released low read length ENCFF496VHU bigWig fold change over control ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF569VLD, ENCFF631VBQ 381752474 ENCODE Processing Pipeline 1199c868f40e4a1f6745b00d18383415 https://www.encodeproject.org/files/ENCFF496VHU/@@download/ENCFF496VHU.bigWig mm10 released low read length ENCFF029WVD bigWig fold change over control ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF053WYD, ENCFF568KLX, ENCFF569VLD, ENCFF631VBQ 743976442 ENCODE Processing Pipeline b20ce343571ee951134549c641950128 https://www.encodeproject.org/files/ENCFF029WVD/@@download/ENCFF029WVD.bigWig mm10 released low read length ENCFF645FMD bed narrowPeak replicated peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF319LRG, ENCFF686SHH, ENCFF853ALM 776016 ENCODE Processing Pipeline 63dd754326c12096a981afc170e545ec https://www.encodeproject.org/files/ENCFF645FMD/@@download/ENCFF645FMD.bed.gz mm10 released low read length ENCFF250HZD bigBed narrowPeak replicated peaks ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF645FMD 1786977 ENCODE Processing Pipeline d1be254817ed87968eab53d7a241294e https://www.encodeproject.org/files/ENCFF250HZD/@@download/ENCFF250HZD.bigBed mm10 released low read length ENCFF183MBY fastq reads ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2193393705 Bing Ren, UCSD a18bafd39dd1d67be8124e5fe6fa97b1 SRA:SRR3652480 https://www.encodeproject.org/files/ENCFF183MBY/@@download/ENCFF183MBY.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released mild to moderate bottlenecking, inconsistent platforms ENCFF129PWT fastq reads ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2623250396 Bing Ren, UCSD 83c5770c26145953af1a2df9faffdf16 SRA:SRR3652479 https://www.encodeproject.org/files/ENCFF129PWT/@@download/ENCFF129PWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released mild to moderate bottlenecking, inconsistent platforms ENCFF948TAC bam alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF129PWT, ENCFF806TVZ 2018768735 ENCODE Processing Pipeline c197d7a52d02af34143d4acba892583c https://www.encodeproject.org/files/ENCFF948TAC/@@download/ENCFF948TAC.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF872FCQ bam alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF183MBY, ENCFF806TVZ 1712570676 ENCODE Processing Pipeline 3d7d6e76e6c980d2c1821d68596b9b90 https://www.encodeproject.org/files/ENCFF872FCQ/@@download/ENCFF872FCQ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF065URA bed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF582LOU, ENCFF948TAC 1449063 ENCODE Processing Pipeline cd2d3de83abf5a2f5e482c1a32f75efa https://www.encodeproject.org/files/ENCFF065URA/@@download/ENCFF065URA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF443GKP bed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF582LOU, ENCFF872FCQ, ENCFF948TAC 1687801 ENCODE Processing Pipeline cd1b3d70941f9640cd26a7cf1a6055d3 https://www.encodeproject.org/files/ENCFF443GKP/@@download/ENCFF443GKP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF084ZIA bigBed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF964PFQ 3386683 ENCODE Processing Pipeline a96631fc60d0a6441f2f0ad3b4507c06 https://www.encodeproject.org/files/ENCFF084ZIA/@@download/ENCFF084ZIA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF416TDQ bigWig signal p-value ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF582LOU, ENCFF948TAC 760578071 ENCODE Processing Pipeline bc8b133207004ecb24d7bdde20c3c510 https://www.encodeproject.org/files/ENCFF416TDQ/@@download/ENCFF416TDQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF964PFQ bed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF872FCQ 1459774 ENCODE Processing Pipeline 7d9cc0cd728b2cc828d1f9e71cb14e75 https://www.encodeproject.org/files/ENCFF964PFQ/@@download/ENCFF964PFQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF540DNC bigBed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF065URA 4255750 ENCODE Processing Pipeline 3a6e4317f32037f4860fe6de0997c7c7 https://www.encodeproject.org/files/ENCFF540DNC/@@download/ENCFF540DNC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF582ZPN bigBed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF443GKP 4757188 ENCODE Processing Pipeline 2231e279d7b661cffa80c05f12596a7c https://www.encodeproject.org/files/ENCFF582ZPN/@@download/ENCFF582ZPN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF499FUL bigWig signal p-value ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF872FCQ 485560708 ENCODE Processing Pipeline 85ec68dd54a3849e52174d9d4449cfde https://www.encodeproject.org/files/ENCFF499FUL/@@download/ENCFF499FUL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF509QRO bigWig signal p-value ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF582LOU, ENCFF872FCQ, ENCFF948TAC 1191354714 ENCODE Processing Pipeline 002664f979ef9875d30f5f878e5843f7 https://www.encodeproject.org/files/ENCFF509QRO/@@download/ENCFF509QRO.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF663YRE bigWig fold change over control ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF582LOU, ENCFF948TAC 764906298 ENCODE Processing Pipeline 44ec1b61ca1fe191743890ad7dee20fc https://www.encodeproject.org/files/ENCFF663YRE/@@download/ENCFF663YRE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF860JFZ bigWig fold change over control ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF872FCQ 606298091 ENCODE Processing Pipeline 1b521a7751c611bf85709fec52b7589a https://www.encodeproject.org/files/ENCFF860JFZ/@@download/ENCFF860JFZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF995PJC bigWig fold change over control ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF582LOU, ENCFF872FCQ, ENCFF948TAC 1277469435 ENCODE Processing Pipeline e076b4e2e745c38a169dcddea65ca35d https://www.encodeproject.org/files/ENCFF995PJC/@@download/ENCFF995PJC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF722KXJ bed narrowPeak replicated peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF065URA, ENCFF443GKP, ENCFF964PFQ 1206293 ENCODE Processing Pipeline 2483ce0f2bc7f5b08252cd259c09cd44 https://www.encodeproject.org/files/ENCFF722KXJ/@@download/ENCFF722KXJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF635MOJ bigBed narrowPeak replicated peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF722KXJ 2719719 ENCODE Processing Pipeline e142f0fbf579c4204a3fd3f54c24c749 https://www.encodeproject.org/files/ENCFF635MOJ/@@download/ENCFF635MOJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF639SSK bam unfiltered alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF129PWT 3110450359 ENCODE Processing Pipeline d197332923986e00690e8b640c6dab95 https://www.encodeproject.org/files/ENCFF639SSK/@@download/ENCFF639SSK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF165YIP bam unfiltered alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF183MBY 2614065173 ENCODE Processing Pipeline 989ba7e6563e3372320741cb7824653e https://www.encodeproject.org/files/ENCFF165YIP/@@download/ENCFF165YIP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF899KXE bam alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF183MBY 1712134670 ENCODE Processing Pipeline 34ea899d17d6a82a9cbc39b91ebecf52 https://www.encodeproject.org/files/ENCFF899KXE/@@download/ENCFF899KXE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF076YFQ bam alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF129PWT 2018294429 ENCODE Processing Pipeline d6d4eacc2393621b0916311717ec1de6 https://www.encodeproject.org/files/ENCFF076YFQ/@@download/ENCFF076YFQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF542SPW bed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF076YFQ, ENCFF245OIS 1249388 ENCODE Processing Pipeline 470764a294cb06faea08653a5b1b409d https://www.encodeproject.org/files/ENCFF542SPW/@@download/ENCFF542SPW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF532DWG bed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF899KXE 1486222 ENCODE Processing Pipeline 5125076a30d8939d955cc49f51f74964 https://www.encodeproject.org/files/ENCFF532DWG/@@download/ENCFF532DWG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF070YWO bed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF076YFQ, ENCFF245OIS, ENCFF389YBT, ENCFF899KXE 1719570 ENCODE Processing Pipeline ded9d7421a872591a4d0438f394023c2 https://www.encodeproject.org/files/ENCFF070YWO/@@download/ENCFF070YWO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF394ESJ bigBed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF542SPW 3664019 ENCODE Processing Pipeline f24c7763ad3d83ac82bb010b264451b0 https://www.encodeproject.org/files/ENCFF394ESJ/@@download/ENCFF394ESJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF497GOB bigBed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF532DWG 3462480 ENCODE Processing Pipeline e7fa062a958ca39ccf99b95f76177ab5 https://www.encodeproject.org/files/ENCFF497GOB/@@download/ENCFF497GOB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF353RHX bigBed narrowPeak peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF070YWO 4824210 ENCODE Processing Pipeline 9b35398eda8ba5368f817cccc1445693 https://www.encodeproject.org/files/ENCFF353RHX/@@download/ENCFF353RHX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF062CBK bigWig signal p-value ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF076YFQ, ENCFF245OIS 596350643 ENCODE Processing Pipeline 8b7304f69a9d72b8ffc576baaf951f3d https://www.encodeproject.org/files/ENCFF062CBK/@@download/ENCFF062CBK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF181QIT bigWig signal p-value ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF899KXE 542390007 ENCODE Processing Pipeline 942f88266077b33ee499ecd9b4df986e https://www.encodeproject.org/files/ENCFF181QIT/@@download/ENCFF181QIT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF147AJN bigWig signal p-value ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF076YFQ, ENCFF245OIS, ENCFF389YBT, ENCFF899KXE 1084989677 ENCODE Processing Pipeline 209de26af7dfa633e2fbca371d729eda https://www.encodeproject.org/files/ENCFF147AJN/@@download/ENCFF147AJN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF669YAQ bigWig fold change over control ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF076YFQ, ENCFF245OIS 744096557 ENCODE Processing Pipeline 54148bfa097b1b8e0b1cab7888e81a7d https://www.encodeproject.org/files/ENCFF669YAQ/@@download/ENCFF669YAQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF997WIP bigWig fold change over control ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF899KXE 666299523 ENCODE Processing Pipeline 256289dac9608295c723b998d03d1caa https://www.encodeproject.org/files/ENCFF997WIP/@@download/ENCFF997WIP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF803SVJ bigWig fold change over control ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF076YFQ, ENCFF245OIS, ENCFF389YBT, ENCFF899KXE 1278291248 ENCODE Processing Pipeline 18dcda9e6c4367c6b6ea8ccba3cfcdfe https://www.encodeproject.org/files/ENCFF803SVJ/@@download/ENCFF803SVJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF378DZY bed narrowPeak replicated peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF070YWO, ENCFF532DWG, ENCFF542SPW 1182762 ENCODE Processing Pipeline 285f37bdaa6b8ed78b78a8d9d563ad04 https://www.encodeproject.org/files/ENCFF378DZY/@@download/ENCFF378DZY.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF165YVS bigBed narrowPeak replicated peaks ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF378DZY 2660978 ENCODE Processing Pipeline f2fe3c4930be73ff57cc30c5095e3d28 https://www.encodeproject.org/files/ENCFF165YVS/@@download/ENCFF165YVS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF805QZD fastq reads ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3525583068 Bing Ren, UCSD 9c296c7d1f790d96e7e841dec7b94838 SRA:SRR3652100 https://www.encodeproject.org/files/ENCFF805QZD/@@download/ENCFF805QZD.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released inconsistent platforms ENCFF772KXZ fastq reads ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2860788055 Bing Ren, UCSD 26e945f13d9ff626ef0255d422e85e60 SRA:SRR3652101 https://www.encodeproject.org/files/ENCFF772KXZ/@@download/ENCFF772KXZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released inconsistent platforms ENCFF853VSK bam alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF805QZD, ENCFF806TVZ 3125113985 ENCODE Processing Pipeline 6a90b96de16da42b7adbcf60b414d37b https://www.encodeproject.org/files/ENCFF853VSK/@@download/ENCFF853VSK.bam mm10-minimal archived inconsistent platforms ENCFF798TCX bam alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF772KXZ, ENCFF806TVZ 2675525669 ENCODE Processing Pipeline 2291ca8a4b2fa156af3dc3de3ded8904 https://www.encodeproject.org/files/ENCFF798TCX/@@download/ENCFF798TCX.bam mm10-minimal archived inconsistent platforms ENCFF830MPW bed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF476GUX, ENCFF592WTG, ENCFF853VSK 3784684 ENCODE Processing Pipeline b59a65c69c868484df098689f4d06f6f https://www.encodeproject.org/files/ENCFF830MPW/@@download/ENCFF830MPW.bed.gz mm10-minimal archived inconsistent platforms ENCFF196JWR bed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF476GUX, ENCFF592WTG, ENCFF798TCX 3582216 ENCODE Processing Pipeline 5fab540a35b900e7983182bf05424a3b https://www.encodeproject.org/files/ENCFF196JWR/@@download/ENCFF196JWR.bed.gz mm10-minimal archived inconsistent platforms ENCFF616WXD bed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF476GUX, ENCFF592WTG, ENCFF798TCX, ENCFF853VSK 3432593 ENCODE Processing Pipeline 9427d0fd8cae22a426f2816a1e02142f https://www.encodeproject.org/files/ENCFF616WXD/@@download/ENCFF616WXD.bed.gz mm10-minimal archived inconsistent platforms ENCFF966SPP bigBed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF616WXD 8902550 ENCODE Processing Pipeline 0c45e76c1a573994ff2a76e724e526da https://www.encodeproject.org/files/ENCFF966SPP/@@download/ENCFF966SPP.bigBed mm10-minimal archived inconsistent platforms ENCFF722EGQ bigBed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF830MPW 9820747 ENCODE Processing Pipeline f82ab2d2ffe6b85aca7934daf98dbbe1 https://www.encodeproject.org/files/ENCFF722EGQ/@@download/ENCFF722EGQ.bigBed mm10-minimal archived inconsistent platforms ENCFF036RPJ bigBed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF196JWR 9280346 ENCODE Processing Pipeline 21240048ffd75c05984e6a3e55563b89 https://www.encodeproject.org/files/ENCFF036RPJ/@@download/ENCFF036RPJ.bigBed mm10-minimal archived inconsistent platforms ENCFF505SUD bigWig signal p-value ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF476GUX, ENCFF592WTG, ENCFF853VSK 958664356 ENCODE Processing Pipeline 36cc33c79730618f39ebbca05a6d9512 https://www.encodeproject.org/files/ENCFF505SUD/@@download/ENCFF505SUD.bigWig mm10-minimal archived inconsistent platforms ENCFF151PDD bigWig signal p-value ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF476GUX, ENCFF592WTG, ENCFF798TCX 873609488 ENCODE Processing Pipeline 74a00c2488317d23e269f6b5732bddc6 https://www.encodeproject.org/files/ENCFF151PDD/@@download/ENCFF151PDD.bigWig mm10-minimal archived inconsistent platforms ENCFF649XPG bigWig signal p-value ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF476GUX, ENCFF592WTG, ENCFF798TCX, ENCFF853VSK 1292172428 ENCODE Processing Pipeline cc15fe183438001ebea41079f0b52829 https://www.encodeproject.org/files/ENCFF649XPG/@@download/ENCFF649XPG.bigWig mm10-minimal archived inconsistent platforms ENCFF131LHZ bigWig fold change over control ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF476GUX, ENCFF592WTG, ENCFF853VSK 1118071826 ENCODE Processing Pipeline c224704ef98f5535bc4b6f817de3bb78 https://www.encodeproject.org/files/ENCFF131LHZ/@@download/ENCFF131LHZ.bigWig mm10-minimal archived inconsistent platforms ENCFF930DAH bigWig fold change over control ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF476GUX, ENCFF592WTG, ENCFF798TCX 1037675700 ENCODE Processing Pipeline 0b9fb2f782758fd63d72d80cd593bcc8 https://www.encodeproject.org/files/ENCFF930DAH/@@download/ENCFF930DAH.bigWig mm10-minimal archived inconsistent platforms ENCFF177DIM bigBed narrowPeak replicated peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF449HDJ 6974855 ENCODE Processing Pipeline 84d9ddadb1deb9cbf5cc2ad90424213b https://www.encodeproject.org/files/ENCFF177DIM/@@download/ENCFF177DIM.bigBed mm10-minimal archived inconsistent platforms ENCFF876VYK bigWig fold change over control ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF476GUX, ENCFF592WTG, ENCFF798TCX, ENCFF853VSK 1613157649 ENCODE Processing Pipeline a4b9b1d5aa44a57b4cc89180794e63e8 https://www.encodeproject.org/files/ENCFF876VYK/@@download/ENCFF876VYK.bigWig mm10-minimal archived inconsistent platforms ENCFF449HDJ bed narrowPeak replicated peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF196JWR, ENCFF616WXD, ENCFF830MPW 3477034 ENCODE Processing Pipeline 8646d2e71aaa5b17addd8dc9840f0465 https://www.encodeproject.org/files/ENCFF449HDJ/@@download/ENCFF449HDJ.bed.gz mm10-minimal archived inconsistent platforms ENCFF081TKU bam unfiltered alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF772KXZ 3407597833 ENCODE Processing Pipeline 28afffab5548d7ddda0408c86432eb6b https://www.encodeproject.org/files/ENCFF081TKU/@@download/ENCFF081TKU.bam mm10 released inconsistent platforms ENCFF464YSO bam unfiltered alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF805QZD 4136853088 ENCODE Processing Pipeline 8ef9f135a9481f5fd5c4ff3e14256855 https://www.encodeproject.org/files/ENCFF464YSO/@@download/ENCFF464YSO.bam mm10 released inconsistent platforms ENCFF167AOI bam alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF772KXZ 2675047735 ENCODE Processing Pipeline 0e3ee3dc832b4c970569eeb2a48eba03 https://www.encodeproject.org/files/ENCFF167AOI/@@download/ENCFF167AOI.bam mm10 released inconsistent platforms ENCFF071PID bam alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF805QZD 3124520579 ENCODE Processing Pipeline 7275083a87728a8d7f122174a5fd0ea5 https://www.encodeproject.org/files/ENCFF071PID/@@download/ENCFF071PID.bam mm10 released inconsistent platforms ENCFF898NFC bed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF071PID, ENCFF285XPR, ENCFF627RIT 3551229 ENCODE Processing Pipeline b96cc886a79eda3ec097b7e917e0bed3 https://www.encodeproject.org/files/ENCFF898NFC/@@download/ENCFF898NFC.bed.gz mm10 released inconsistent platforms ENCFF498WEJ bed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF167AOI, ENCFF285XPR 2664135 ENCODE Processing Pipeline e05862aef87aaf13c5f0e344515a24dc https://www.encodeproject.org/files/ENCFF498WEJ/@@download/ENCFF498WEJ.bed.gz mm10 released inconsistent platforms ENCFF962FEF bed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF071PID, ENCFF167AOI, ENCFF285XPR, ENCFF627RIT 3639102 ENCODE Processing Pipeline 0546693708a0b7b34faf79f484ac8f24 https://www.encodeproject.org/files/ENCFF962FEF/@@download/ENCFF962FEF.bed.gz mm10 released inconsistent platforms ENCFF738OTZ bigBed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF898NFC 9307765 ENCODE Processing Pipeline 6cc772dc5f6104bee7f2e01c1ffed26f https://www.encodeproject.org/files/ENCFF738OTZ/@@download/ENCFF738OTZ.bigBed mm10 released inconsistent platforms ENCFF675BPB bigBed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF962FEF 9455762 ENCODE Processing Pipeline d71506a2e964b9408545a203d621bd56 https://www.encodeproject.org/files/ENCFF675BPB/@@download/ENCFF675BPB.bigBed mm10 released inconsistent platforms ENCFF522LBM bigBed narrowPeak peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF498WEJ 7079591 ENCODE Processing Pipeline 1341237b41d51adb1927abf82a819f03 https://www.encodeproject.org/files/ENCFF522LBM/@@download/ENCFF522LBM.bigBed mm10 released inconsistent platforms ENCFF092ZIJ bigWig signal p-value ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF071PID, ENCFF285XPR, ENCFF627RIT 1190071132 ENCODE Processing Pipeline ff3657e3230d6d7aecf8eac6283acc8c https://www.encodeproject.org/files/ENCFF092ZIJ/@@download/ENCFF092ZIJ.bigWig mm10 released inconsistent platforms ENCFF136FAZ bigWig signal p-value ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF167AOI, ENCFF285XPR 868024849 ENCODE Processing Pipeline bd3850d0c1ba0f5570c66c3915177a86 https://www.encodeproject.org/files/ENCFF136FAZ/@@download/ENCFF136FAZ.bigWig mm10 released inconsistent platforms ENCFF509RQZ bigWig signal p-value ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF071PID, ENCFF167AOI, ENCFF285XPR, ENCFF627RIT 1533789654 ENCODE Processing Pipeline 0d7a82d880d4a0bfabb656a5ef5bdfe4 https://www.encodeproject.org/files/ENCFF509RQZ/@@download/ENCFF509RQZ.bigWig mm10 released inconsistent platforms ENCFF741BMJ bigWig fold change over control ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF071PID, ENCFF285XPR, ENCFF627RIT 1228066213 ENCODE Processing Pipeline b30006dc55b05a55ab27e2eac4180d05 https://www.encodeproject.org/files/ENCFF741BMJ/@@download/ENCFF741BMJ.bigWig mm10 released inconsistent platforms ENCFF097ZUQ bigWig fold change over control ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF167AOI, ENCFF285XPR 904352407 ENCODE Processing Pipeline 33979b06cd4f186e8aa7629cb7771185 https://www.encodeproject.org/files/ENCFF097ZUQ/@@download/ENCFF097ZUQ.bigWig mm10 released inconsistent platforms ENCFF436MUY bigWig fold change over control ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF071PID, ENCFF167AOI, ENCFF285XPR, ENCFF627RIT 1693184561 ENCODE Processing Pipeline 5c0afc46d4ad163f993fafe22437d353 https://www.encodeproject.org/files/ENCFF436MUY/@@download/ENCFF436MUY.bigWig mm10 released inconsistent platforms ENCFF843SZF bigBed narrowPeak replicated peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285JOI 6574702 ENCODE Processing Pipeline c8da5596cea3b5609148bc912a553e80 https://www.encodeproject.org/files/ENCFF843SZF/@@download/ENCFF843SZF.bigBed mm10 released inconsistent platforms ENCFF285JOI bed narrowPeak replicated peaks ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF498WEJ, ENCFF898NFC, ENCFF962FEF 3308146 ENCODE Processing Pipeline 286e8eb496fc4d5ac2dc8904dc1ae401 https://www.encodeproject.org/files/ENCFF285JOI/@@download/ENCFF285JOI.bed.gz mm10 released inconsistent platforms ENCFF002DQB fastq reads ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 2 36 single-ended 966328100 Bing Ren, UCSD 5450d06779f2134213a0b4a0e26702b4 SRA:SRR3651745 https://www.encodeproject.org/files/ENCFF002DQB/@@download/ENCFF002DQB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APQ/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQC fastq reads ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 50 single-ended 1809752462 Bing Ren, UCSD 446c0dab48b857e79348275d962fcdff SRA:SRR3651746 https://www.encodeproject.org/files/ENCFF002DQC/@@download/ENCFF002DQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQD fastq reads ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 2 36 single-ended 1050508587 Bing Ren, UCSD fc84fb2721bbc59a0658d671166339e2 SRA:SRR3651743 https://www.encodeproject.org/files/ENCFF002DQD/@@download/ENCFF002DQD.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APT/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQE fastq reads ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 50 single-ended 1666068054 Bing Ren, UCSD 300ef29b5ffb754a8eb4b21a91bae0e0 SRA:SRR3651744 https://www.encodeproject.org/files/ENCFF002DQE/@@download/ENCFF002DQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF003EPN bam alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF002DQB, ENCFF002DQC, ENCFF806TVZ 1438071877 ENCODE Processing Pipeline 09efde4ac7fe6e49daafa5ef0fa86b03 https://www.encodeproject.org/files/ENCFF003EPN/@@download/ENCFF003EPN.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF321ZLN bam alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF002DQD, ENCFF002DQE, ENCFF806TVZ 1165202827 ENCODE Processing Pipeline 20743b339e7a7606c66e898f20393e23 https://www.encodeproject.org/files/ENCFF321ZLN/@@download/ENCFF321ZLN.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF169SGL bed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF321ZLN, ENCFF351THT, ENCFF528CCC 886171 ENCODE Processing Pipeline 0d7d7982c419ae8bebb6cec3b674ec67 https://www.encodeproject.org/files/ENCFF169SGL/@@download/ENCFF169SGL.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF951YRL bigBed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF016IYT 1244038 ENCODE Processing Pipeline 6071df18bec1f32e71e02835de4ac112 https://www.encodeproject.org/files/ENCFF951YRL/@@download/ENCFF951YRL.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF308FYP bed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF003EPN, ENCFF321ZLN, ENCFF351THT, ENCFF528CCC 519001 ENCODE Processing Pipeline 70424b5cdffff83f79fb100f49a65b8d https://www.encodeproject.org/files/ENCFF308FYP/@@download/ENCFF308FYP.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF016IYT bed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF003EPN, ENCFF351THT, ENCFF528CCC 534383 ENCODE Processing Pipeline e71ab142174f8e544e88a12958343f4a https://www.encodeproject.org/files/ENCFF016IYT/@@download/ENCFF016IYT.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF159GIH bigBed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF169SGL 1872952 ENCODE Processing Pipeline 69acc271789008385ff42ee146867f6b https://www.encodeproject.org/files/ENCFF159GIH/@@download/ENCFF159GIH.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF205PQM bigBed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF308FYP 1145340 ENCODE Processing Pipeline 3bea15a734d3a7f7e8e9b63c8ef6d2e6 https://www.encodeproject.org/files/ENCFF205PQM/@@download/ENCFF205PQM.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF016KZW bigWig signal p-value ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF003EPN, ENCFF351THT, ENCFF528CCC 643227098 ENCODE Processing Pipeline 843d34babd3c9a5c7748c5edc1cd2251 https://www.encodeproject.org/files/ENCFF016KZW/@@download/ENCFF016KZW.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF384OWM bigWig signal p-value ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF321ZLN, ENCFF351THT, ENCFF528CCC 524154709 ENCODE Processing Pipeline 14d719963ae59a1618d9248acc99d91c https://www.encodeproject.org/files/ENCFF384OWM/@@download/ENCFF384OWM.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF541NSV bigWig signal p-value ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF003EPN, ENCFF321ZLN, ENCFF351THT, ENCFF528CCC 749528745 ENCODE Processing Pipeline 154ff88783cae37119892fd216bafb2f https://www.encodeproject.org/files/ENCFF541NSV/@@download/ENCFF541NSV.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF196OVZ bigWig fold change over control ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF003EPN, ENCFF351THT, ENCFF528CCC 599085698 ENCODE Processing Pipeline 7d7d1206c0bec68e8f9d69f0b699b2b6 https://www.encodeproject.org/files/ENCFF196OVZ/@@download/ENCFF196OVZ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF147JAL bigWig fold change over control ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF321ZLN, ENCFF351THT, ENCFF528CCC 500093078 ENCODE Processing Pipeline 556e997398bfe0f8d704bf5c51b2f602 https://www.encodeproject.org/files/ENCFF147JAL/@@download/ENCFF147JAL.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF463TTI bed narrowPeak replicated peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF016IYT, ENCFF169SGL, ENCFF308FYP 277585 ENCODE Processing Pipeline c65a3ac15576df61ed57a7d3c1fa4a40 https://www.encodeproject.org/files/ENCFF463TTI/@@download/ENCFF463TTI.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF038BNT bigWig fold change over control ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF003EPN, ENCFF321ZLN, ENCFF351THT, ENCFF528CCC 856556803 ENCODE Processing Pipeline 26dd1cc4842c213b1985fb9d8edd24ab https://www.encodeproject.org/files/ENCFF038BNT/@@download/ENCFF038BNT.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF319CLV bigBed narrowPeak replicated peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF463TTI 618869 ENCODE Processing Pipeline 0ef850e23969274505c2a80d5d6007d0 https://www.encodeproject.org/files/ENCFF319CLV/@@download/ENCFF319CLV.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF155LFV bam unfiltered alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DQB, ENCFF002DQC, ENCFF018NEO 2678035148 ENCODE Processing Pipeline 7a3a66e0d4e1f02aa79823c6c66c3ea1 https://www.encodeproject.org/files/ENCFF155LFV/@@download/ENCFF155LFV.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF629HHX bam unfiltered alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DQD, ENCFF002DQE, ENCFF018NEO 2623259113 ENCODE Processing Pipeline 2f02d1dc861ec58d55645c006ffe4441 https://www.encodeproject.org/files/ENCFF629HHX/@@download/ENCFF629HHX.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF140ZIV bam alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DQD, ENCFF002DQE, ENCFF018NEO 965039534 ENCODE Processing Pipeline 120c256d11476083cba845fb2ab1dd8e https://www.encodeproject.org/files/ENCFF140ZIV/@@download/ENCFF140ZIV.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF141EJM bam alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DQB, ENCFF002DQC, ENCFF018NEO 1183294518 ENCODE Processing Pipeline a8402023e60fee4213d850f0b8d862a7 https://www.encodeproject.org/files/ENCFF141EJM/@@download/ENCFF141EJM.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF136HNY bed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF037YEE, ENCFF141EJM, ENCFF411XWG 415626 ENCODE Processing Pipeline 94b5a042e0ed2016815661897d7abdca https://www.encodeproject.org/files/ENCFF136HNY/@@download/ENCFF136HNY.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF578OWB bed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF037YEE, ENCFF140ZIV 360396 ENCODE Processing Pipeline adc274aa5ce12d73779c5b70d6812913 https://www.encodeproject.org/files/ENCFF578OWB/@@download/ENCFF578OWB.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF097TWK bed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF037YEE, ENCFF140ZIV, ENCFF141EJM, ENCFF411XWG 560909 ENCODE Processing Pipeline 319113b1c9d884378ad92e5edeb5cf02 https://www.encodeproject.org/files/ENCFF097TWK/@@download/ENCFF097TWK.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF046IYG bigBed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF136HNY 828924 ENCODE Processing Pipeline 0d3af9f20001df3df9b6613175845414 https://www.encodeproject.org/files/ENCFF046IYG/@@download/ENCFF046IYG.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF048NMB bigBed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF578OWB 883011 ENCODE Processing Pipeline b47409d5fc3556433750aee2a7b05f9e https://www.encodeproject.org/files/ENCFF048NMB/@@download/ENCFF048NMB.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF387ZMM bigBed narrowPeak peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF097TWK 1255708 ENCODE Processing Pipeline c8d48b38ecd15d44e9c62b22e0eaeb95 https://www.encodeproject.org/files/ENCFF387ZMM/@@download/ENCFF387ZMM.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF439UAY bigWig signal p-value ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF037YEE, ENCFF141EJM, ENCFF411XWG 478192140 ENCODE Processing Pipeline d372410953cb2d3a96da5dfbd6b4d64d https://www.encodeproject.org/files/ENCFF439UAY/@@download/ENCFF439UAY.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF606YCH bigWig signal p-value ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF037YEE, ENCFF140ZIV 380919617 ENCODE Processing Pipeline 0faddcc7b94e8b49d858f6669dc68227 https://www.encodeproject.org/files/ENCFF606YCH/@@download/ENCFF606YCH.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF462JWD bigWig signal p-value ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF037YEE, ENCFF140ZIV, ENCFF141EJM, ENCFF411XWG 754184236 ENCODE Processing Pipeline 56b2922f9d6a108cc716facc4d6f313f https://www.encodeproject.org/files/ENCFF462JWD/@@download/ENCFF462JWD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF253GPU bigWig fold change over control ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF037YEE, ENCFF141EJM, ENCFF411XWG 572032266 ENCODE Processing Pipeline c1008dae02d47e1de417c4187f28f634 https://www.encodeproject.org/files/ENCFF253GPU/@@download/ENCFF253GPU.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF143EMR bigWig fold change over control ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF037YEE, ENCFF140ZIV 379502382 ENCODE Processing Pipeline 79f443e575943d4102bc8911dca921b2 https://www.encodeproject.org/files/ENCFF143EMR/@@download/ENCFF143EMR.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF034URR bigWig fold change over control ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF037YEE, ENCFF140ZIV, ENCFF141EJM, ENCFF411XWG 837629220 ENCODE Processing Pipeline 904c0b00eafd8bf203e48a973561d241 https://www.encodeproject.org/files/ENCFF034URR/@@download/ENCFF034URR.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF711DMP bed narrowPeak replicated peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF097TWK, ENCFF136HNY, ENCFF578OWB 181689 ENCODE Processing Pipeline e7c7dd72385d36557bfe219b2264acf8 https://www.encodeproject.org/files/ENCFF711DMP/@@download/ENCFF711DMP.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF534OBS bigBed narrowPeak replicated peaks ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF711DMP 541785 ENCODE Processing Pipeline 71279cb611dc85dabcd01a81efda60a9 https://www.encodeproject.org/files/ENCFF534OBS/@@download/ENCFF534OBS.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF673WCQ fastq reads ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1834945420 Bing Ren, UCSD 3bd74b46c59696cc53b97ed65b364fd9 SRA:SRR3651985 https://www.encodeproject.org/files/ENCFF673WCQ/@@download/ENCFF673WCQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF999CHE fastq reads ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1827357285 Bing Ren, UCSD 7d0716fc04b3c6fd31f197dbae874789 SRA:SRR3651986 https://www.encodeproject.org/files/ENCFF999CHE/@@download/ENCFF999CHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF213WON bam alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF999CHE 1319953279 ENCODE Processing Pipeline 481cd187ceed72f83b5692033958c18d https://www.encodeproject.org/files/ENCFF213WON/@@download/ENCFF213WON.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF606EWF bam alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF673WCQ, ENCFF806TVZ 1202010258 ENCODE Processing Pipeline 69376d12728be4f63cbc5139c96a24c8 https://www.encodeproject.org/files/ENCFF606EWF/@@download/ENCFF606EWF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF347TTD bed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF213WON, ENCFF241ENQ 1004837 ENCODE Processing Pipeline 6f54745b88a9b843b04478f959355e5b https://www.encodeproject.org/files/ENCFF347TTD/@@download/ENCFF347TTD.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF016QRR bed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF213WON, ENCFF241ENQ, ENCFF606EWF 1208136 ENCODE Processing Pipeline 3698658f5da2b21e7c3262ca2ba44a4a https://www.encodeproject.org/files/ENCFF016QRR/@@download/ENCFF016QRR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF785UVO bigBed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF467LFL 3265237 ENCODE Processing Pipeline 9f905f7088cb78478cd00d13ca0a0138 https://www.encodeproject.org/files/ENCFF785UVO/@@download/ENCFF785UVO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF460ORW bigBed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF016QRR 3571507 ENCODE Processing Pipeline ffea410aaf3b0bd843fb3c1e8f2ce9b0 https://www.encodeproject.org/files/ENCFF460ORW/@@download/ENCFF460ORW.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF467LFL bed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF606EWF 1057292 ENCODE Processing Pipeline 23c68d9901198aa907b328f2dee0896c https://www.encodeproject.org/files/ENCFF467LFL/@@download/ENCFF467LFL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF115PYQ bigWig signal p-value ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF213WON, ENCFF241ENQ 512103188 ENCODE Processing Pipeline bf3e8acb878c9cf0096aefc8f6fffba1 https://www.encodeproject.org/files/ENCFF115PYQ/@@download/ENCFF115PYQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF911BZY bigBed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF347TTD 3133001 ENCODE Processing Pipeline 0b4f55dcd307e02e7872bd697f32481e https://www.encodeproject.org/files/ENCFF911BZY/@@download/ENCFF911BZY.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF361GKD bigWig signal p-value ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF606EWF 463412814 ENCODE Processing Pipeline 44bf11e080e993a110847680e1e7b5e2 https://www.encodeproject.org/files/ENCFF361GKD/@@download/ENCFF361GKD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF168XRL bigWig signal p-value ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF213WON, ENCFF241ENQ, ENCFF606EWF 884089408 ENCODE Processing Pipeline 65d321d78b3cfc398c4be2cd8745759d https://www.encodeproject.org/files/ENCFF168XRL/@@download/ENCFF168XRL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF488YDQ bigWig fold change over control ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF213WON, ENCFF241ENQ 515665277 ENCODE Processing Pipeline 0f3d0d3908cf287ed9ddf5c203e2359c https://www.encodeproject.org/files/ENCFF488YDQ/@@download/ENCFF488YDQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF024PCJ bigWig fold change over control ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF606EWF 454469375 ENCODE Processing Pipeline f6e5452e2197f1d76967b4f7c210e88f https://www.encodeproject.org/files/ENCFF024PCJ/@@download/ENCFF024PCJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF588BTJ bigWig fold change over control ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF213WON, ENCFF241ENQ, ENCFF606EWF 979991960 ENCODE Processing Pipeline 7089979700f914d4e0cb4400c1c77036 https://www.encodeproject.org/files/ENCFF588BTJ/@@download/ENCFF588BTJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF511AKZ bed narrowPeak replicated peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF016QRR, ENCFF347TTD, ENCFF467LFL 1293017 ENCODE Processing Pipeline 217000a1b87870da5df738820f35796e https://www.encodeproject.org/files/ENCFF511AKZ/@@download/ENCFF511AKZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF134FNI bigBed narrowPeak replicated peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF511AKZ 2796027 ENCODE Processing Pipeline f6535230facaaf45421bac4a54edbd30 https://www.encodeproject.org/files/ENCFF134FNI/@@download/ENCFF134FNI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF657VXP bam unfiltered alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF999CHE 2052691071 ENCODE Processing Pipeline 28a9ed826ddad967fe75e61994580c48 https://www.encodeproject.org/files/ENCFF657VXP/@@download/ENCFF657VXP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF033RFR bam unfiltered alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF673WCQ 1981290780 ENCODE Processing Pipeline 60b93fcd90979966d46ea2bc302aebe9 https://www.encodeproject.org/files/ENCFF033RFR/@@download/ENCFF033RFR.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF018XRJ bam alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF673WCQ 1201869438 ENCODE Processing Pipeline b0822431e1f1e240a3d1a668f9611558 https://www.encodeproject.org/files/ENCFF018XRJ/@@download/ENCFF018XRJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF781ZAA bam alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF999CHE 1319719683 ENCODE Processing Pipeline b1a9ca49b634fd6b167161f768a54c26 https://www.encodeproject.org/files/ENCFF781ZAA/@@download/ENCFF781ZAA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF313PLI bed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF781ZAA 1015299 ENCODE Processing Pipeline 3a44ee6f7c97c4e819d4d49488e894d2 https://www.encodeproject.org/files/ENCFF313PLI/@@download/ENCFF313PLI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF506EPP bed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018XRJ, ENCFF487AIV, ENCFF642FOT, ENCFF781ZAA 1182888 ENCODE Processing Pipeline cf203e6e51fa0a0495a67f0289aa63cb https://www.encodeproject.org/files/ENCFF506EPP/@@download/ENCFF506EPP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF960NMV bed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018XRJ, ENCFF642FOT 1087056 ENCODE Processing Pipeline b8e364b88a9b4b91851aa7f1f3d9d124 https://www.encodeproject.org/files/ENCFF960NMV/@@download/ENCFF960NMV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF931KAM bigBed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF960NMV 3339339 ENCODE Processing Pipeline 8107e54f14d325833ebe27ba7ba2fa5f https://www.encodeproject.org/files/ENCFF931KAM/@@download/ENCFF931KAM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF495HPR bigBed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF313PLI 3162057 ENCODE Processing Pipeline 36011f2c930fca06aee39a5e0bffc4a8 https://www.encodeproject.org/files/ENCFF495HPR/@@download/ENCFF495HPR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF726AWZ bigBed narrowPeak peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF506EPP 3511564 ENCODE Processing Pipeline 60a359c11c24408f7333cf518f4a8332 https://www.encodeproject.org/files/ENCFF726AWZ/@@download/ENCFF726AWZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF081ZFG bigWig signal p-value ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF781ZAA 535407550 ENCODE Processing Pipeline 0ca3d35ee26f63828c94f0b5e68f3e4f https://www.encodeproject.org/files/ENCFF081ZFG/@@download/ENCFF081ZFG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF309VVN bigWig signal p-value ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018XRJ, ENCFF642FOT 625799167 ENCODE Processing Pipeline e9b1d0fb4aa94f96e9ba3bf6d6c31a48 https://www.encodeproject.org/files/ENCFF309VVN/@@download/ENCFF309VVN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF892UKB bigWig signal p-value ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018XRJ, ENCFF487AIV, ENCFF642FOT, ENCFF781ZAA 1086081503 ENCODE Processing Pipeline bce20192c35d885b99278078ebc46e77 https://www.encodeproject.org/files/ENCFF892UKB/@@download/ENCFF892UKB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF760KGA bigWig fold change over control ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF781ZAA 574731388 ENCODE Processing Pipeline dd531bd1b163c702fd7066aafafb7acd https://www.encodeproject.org/files/ENCFF760KGA/@@download/ENCFF760KGA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF069KVB bigWig fold change over control ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018XRJ, ENCFF642FOT 493143012 ENCODE Processing Pipeline 62c6e1bc21e4a5bd1ccd5f365d4e15ec https://www.encodeproject.org/files/ENCFF069KVB/@@download/ENCFF069KVB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF062SWO bigWig fold change over control ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018XRJ, ENCFF487AIV, ENCFF642FOT, ENCFF781ZAA 1077256715 ENCODE Processing Pipeline 1e52b273b8910d81d583c98190fc2652 https://www.encodeproject.org/files/ENCFF062SWO/@@download/ENCFF062SWO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF409HRM bigBed narrowPeak replicated peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF004HCZ 2789317 ENCODE Processing Pipeline 2a454c166354262e00ff66f672543a1b https://www.encodeproject.org/files/ENCFF409HRM/@@download/ENCFF409HRM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF004HCZ bed narrowPeak replicated peaks ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF313PLI, ENCFF506EPP, ENCFF960NMV 1290807 ENCODE Processing Pipeline f56fb8f6e8f8e188b1662e68bb4c678a https://www.encodeproject.org/files/ENCFF004HCZ/@@download/ENCFF004HCZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001KOL bam alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KOX 432484196 Bing Ren, UCSD 49d69faec49f21abe1a24a31be33afbb https://www.encodeproject.org/files/ENCFF001KOL/@@download/ENCFF001KOL.bam mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KOM bam alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KPB 344752776 Bing Ren, UCSD 3028c5bb811053fd2964a5d2887fdd79 https://www.encodeproject.org/files/ENCFF001KOM/@@download/ENCFF001KOM.bam mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KON bigBed broadPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYE 919086 Bing Ren, UCSD 98a75192b99ade99d8ae6ae7d7a3192c https://www.encodeproject.org/files/ENCFF001KON/@@download/ENCFF001KON.bigBed mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KOR bigWig signal ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KOL, ENCFF001KOM 46042779 Bing Ren, UCSD c68182c35428c5fdae6b715f0618d1df https://www.encodeproject.org/files/ENCFF001KOR/@@download/ENCFF001KOR.bigWig mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KOX fastq reads ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 416623982 Bing Ren, UCSD d9352d4bb45826aed70802377ea99b89 https://www.encodeproject.org/files/ENCFF001KOX/@@download/ENCFF001KOX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KPR/ released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KPB fastq reads ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 329177514 Bing Ren, UCSD 8dd487b5f42580fba3fc8deeb12ba619 https://www.encodeproject.org/files/ENCFF001KPB/@@download/ENCFF001KPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KPS/ released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001XYE bed broadPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KOL, ENCFF001KOM 608148 Bing Ren, UCSD 483f083584cf36505e31505b27289942 https://www.encodeproject.org/files/ENCFF001XYE/@@download/ENCFF001XYE.bed.gz mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF875UXA bam unfiltered alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KOX, ENCFF018NEO 461628012 ENCODE Processing Pipeline 748b07706d5a4c1bb8f11a86a98dc188 https://www.encodeproject.org/files/ENCFF875UXA/@@download/ENCFF875UXA.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF893YVH bam unfiltered alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KPB, ENCFF018NEO 368915228 ENCODE Processing Pipeline d9435014edd3b382de57b7f6b5e97f71 https://www.encodeproject.org/files/ENCFF893YVH/@@download/ENCFF893YVH.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF962ZVS bam alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KOX, ENCFF018NEO 352638982 ENCODE Processing Pipeline 48dbca9de32e588651c613124a1053c5 https://www.encodeproject.org/files/ENCFF962ZVS/@@download/ENCFF962ZVS.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF321KNF bam alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KPB, ENCFF018NEO 280359999 ENCODE Processing Pipeline b4dc7f202c17d7a411bf2ee0b383627d https://www.encodeproject.org/files/ENCFF321KNF/@@download/ENCFF321KNF.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF949VXF bed narrowPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF161DPJ, ENCFF321KNF, ENCFF545AEW, ENCFF962ZVS 1907564 ENCODE Processing Pipeline 265df074c8d62c732fdb7b671d40a823 https://www.encodeproject.org/files/ENCFF949VXF/@@download/ENCFF949VXF.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF455HWM bigBed narrowPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF952UWY 4495952 ENCODE Processing Pipeline 6a59e377859e62d5f0f7565352d21138 https://www.encodeproject.org/files/ENCFF455HWM/@@download/ENCFF455HWM.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF318GJD bigBed narrowPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF949VXF 5190798 ENCODE Processing Pipeline 3f86c30811fe976b8ec493728bae9729 https://www.encodeproject.org/files/ENCFF318GJD/@@download/ENCFF318GJD.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF588ZGW bed narrowPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF161DPJ, ENCFF962ZVS 1747406 ENCODE Processing Pipeline 56ae7e4232e08a93dd700263b92b501f https://www.encodeproject.org/files/ENCFF588ZGW/@@download/ENCFF588ZGW.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF676QVB bigBed narrowPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF588ZGW 4930233 ENCODE Processing Pipeline 3e921ed95a639bb2077994f718160476 https://www.encodeproject.org/files/ENCFF676QVB/@@download/ENCFF676QVB.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF512EGA bigWig fold change over control ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF321KNF, ENCFF545AEW 162647751 ENCODE Processing Pipeline 61ecf347bb38a9cc5a829834e4d90d54 https://www.encodeproject.org/files/ENCFF512EGA/@@download/ENCFF512EGA.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF952UWY bed narrowPeak peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF321KNF, ENCFF545AEW 1567077 ENCODE Processing Pipeline 0b959393335e26d48c78d27e5ddb09b6 https://www.encodeproject.org/files/ENCFF952UWY/@@download/ENCFF952UWY.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF347MNM bigWig signal p-value ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF161DPJ, ENCFF962ZVS 274448234 ENCODE Processing Pipeline dc1ea936562152b76f55e402c5e44cc0 https://www.encodeproject.org/files/ENCFF347MNM/@@download/ENCFF347MNM.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF411PQE bigWig signal p-value ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF321KNF, ENCFF545AEW 310951224 ENCODE Processing Pipeline a00c66c362bd3570f38934e944bff578 https://www.encodeproject.org/files/ENCFF411PQE/@@download/ENCFF411PQE.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF743FMN bigWig signal p-value ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF161DPJ, ENCFF321KNF, ENCFF545AEW, ENCFF962ZVS 460772033 ENCODE Processing Pipeline d7eeb53c39578dd75c6347b2cd14a636 https://www.encodeproject.org/files/ENCFF743FMN/@@download/ENCFF743FMN.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF467TWY bigWig fold change over control ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF161DPJ, ENCFF962ZVS 183942898 ENCODE Processing Pipeline e3a0beb8536ba326792996ac21290ec1 https://www.encodeproject.org/files/ENCFF467TWY/@@download/ENCFF467TWY.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF003NZB bigBed narrowPeak replicated peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF390HXG 3732898 ENCODE Processing Pipeline 0ef38e2b19bc2cb529840877e8552327 https://www.encodeproject.org/files/ENCFF003NZB/@@download/ENCFF003NZB.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF387JGJ bigWig fold change over control ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF161DPJ, ENCFF321KNF, ENCFF545AEW, ENCFF962ZVS 380445687 ENCODE Processing Pipeline b50c3d71678aecad6da868925b944f97 https://www.encodeproject.org/files/ENCFF387JGJ/@@download/ENCFF387JGJ.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF390HXG bed narrowPeak replicated peaks ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF588ZGW, ENCFF949VXF, ENCFF952UWY 1861837 ENCODE Processing Pipeline 9ca48a62e51343bbe8e75e0b5c275ffe https://www.encodeproject.org/files/ENCFF390HXG/@@download/ENCFF390HXG.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF435DWE fastq reads ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 566547960 Bing Ren, UCSD e2e7d666befd0f374f13788c6bae8daa SRA:SRR3652512 https://www.encodeproject.org/files/ENCFF435DWE/@@download/ENCFF435DWE.fastq.gz Illumina HiSeq 2500 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF280GFX fastq reads ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2827341853 Bing Ren, UCSD 259bd595f4ad71607d786ab633df4283 SRA:SRR3652510 https://www.encodeproject.org/files/ENCFF280GFX/@@download/ENCFF280GFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF464PBQ fastq reads ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1562596610 Bing Ren, UCSD 33e3b313184516acc6a6f687c6ddd663 SRA:SRR3652511 https://www.encodeproject.org/files/ENCFF464PBQ/@@download/ENCFF464PBQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF764CBH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF100BZD fastq reads ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2137463914 Bing Ren, UCSD 913f260892432f09819bb81bf2ce90ff SRA:SRR3652513 https://www.encodeproject.org/files/ENCFF100BZD/@@download/ENCFF100BZD.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF952AQZ fastq reads ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1617939280 Bing Ren, UCSD a2965d40cb0b8e311ac6db0c4a25a514 SRA:SRR3652514 https://www.encodeproject.org/files/ENCFF952AQZ/@@download/ENCFF952AQZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF964YSD bam alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF280GFX, ENCFF464PBQ, ENCFF806TVZ 3304075171 ENCODE Processing Pipeline 3a6976ea8dd1c4d739b25f7c2fce15f9 https://www.encodeproject.org/files/ENCFF964YSD/@@download/ENCFF964YSD.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF054SKK bam alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF100BZD, ENCFF435DWE, ENCFF806TVZ, ENCFF952AQZ 3183738457 ENCODE Processing Pipeline 31f4d3a28ce5f7c78faa069b5dea3c80 https://www.encodeproject.org/files/ENCFF054SKK/@@download/ENCFF054SKK.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF074QAM bigBed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF746ESN 4005710 ENCODE Processing Pipeline 4a5347d2bf1322011e980a8c92c2e957 https://www.encodeproject.org/files/ENCFF074QAM/@@download/ENCFF074QAM.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF746ESN bed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF711NEU, ENCFF964YSD 2137194 ENCODE Processing Pipeline c7e35bce03c7b9249f41e7fa8b394b34 https://www.encodeproject.org/files/ENCFF746ESN/@@download/ENCFF746ESN.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF824RCB bed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF054SKK, ENCFF236JLN, ENCFF711NEU, ENCFF964YSD 1753797 ENCODE Processing Pipeline ad695d02c2c711e7258cf39d7a39e56b https://www.encodeproject.org/files/ENCFF824RCB/@@download/ENCFF824RCB.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF237CTQ bed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF054SKK, ENCFF236JLN, ENCFF711NEU 1953637 ENCODE Processing Pipeline 9e58078ff6fa902026971720375703ce https://www.encodeproject.org/files/ENCFF237CTQ/@@download/ENCFF237CTQ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF759SJK bigBed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF824RCB 4197191 ENCODE Processing Pipeline 79fa5e4f373bf1c577e46752aaed6481 https://www.encodeproject.org/files/ENCFF759SJK/@@download/ENCFF759SJK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF216LSY bigBed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF237CTQ 3772846 ENCODE Processing Pipeline 6af9a758e491e557736f7a630b942581 https://www.encodeproject.org/files/ENCFF216LSY/@@download/ENCFF216LSY.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF679PSI bigWig signal p-value ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF711NEU, ENCFF964YSD 854206638 ENCODE Processing Pipeline 9a066e8733ee31a6b544ccac9b59cfe3 https://www.encodeproject.org/files/ENCFF679PSI/@@download/ENCFF679PSI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF475TKF bigWig signal p-value ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF054SKK, ENCFF236JLN, ENCFF711NEU 867444500 ENCODE Processing Pipeline 9ee1c1886b2953d443918025573c9e99 https://www.encodeproject.org/files/ENCFF475TKF/@@download/ENCFF475TKF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF611ZWW bigWig fold change over control ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF711NEU, ENCFF964YSD 1148375479 ENCODE Processing Pipeline a013469341f694e42b82a0fdd3de32d4 https://www.encodeproject.org/files/ENCFF611ZWW/@@download/ENCFF611ZWW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF850SCL bigWig signal p-value ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF054SKK, ENCFF236JLN, ENCFF711NEU, ENCFF964YSD 1279941779 ENCODE Processing Pipeline cb4d05e3b5b765e9d55abb69da67aeaa https://www.encodeproject.org/files/ENCFF850SCL/@@download/ENCFF850SCL.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF683DPK bigWig fold change over control ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF054SKK, ENCFF236JLN, ENCFF711NEU 1067585004 ENCODE Processing Pipeline 88c3e625c4a15cc2d3d9448ee92aa32f https://www.encodeproject.org/files/ENCFF683DPK/@@download/ENCFF683DPK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF136NGZ bigWig fold change over control ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF054SKK, ENCFF236JLN, ENCFF711NEU, ENCFF964YSD 1656504021 ENCODE Processing Pipeline 753bf4563c87fef88d225458ad9ad393 https://www.encodeproject.org/files/ENCFF136NGZ/@@download/ENCFF136NGZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF022PMZ bigBed narrowPeak replicated peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF941FPL 3063473 ENCODE Processing Pipeline e4df08675c2bc0192cde3a39cf08306c https://www.encodeproject.org/files/ENCFF022PMZ/@@download/ENCFF022PMZ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF941FPL bed narrowPeak replicated peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF237CTQ, ENCFF746ESN, ENCFF824RCB 1469125 ENCODE Processing Pipeline 7c82b434f638dac1f52919506b06736f https://www.encodeproject.org/files/ENCFF941FPL/@@download/ENCFF941FPL.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF040DSM bam unfiltered alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF100BZD, ENCFF435DWE, ENCFF952AQZ 5152357509 ENCODE Processing Pipeline d46613075b6aca71f7b56028fb7e7425 https://www.encodeproject.org/files/ENCFF040DSM/@@download/ENCFF040DSM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF625DWB bam unfiltered alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF280GFX, ENCFF464PBQ 5244247544 ENCODE Processing Pipeline 602a3f12f6bfc1fff8bdb334b3f26aac https://www.encodeproject.org/files/ENCFF625DWB/@@download/ENCFF625DWB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF142TWW bam alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF280GFX, ENCFF464PBQ 3303365956 ENCODE Processing Pipeline 07040a2e5e28417416a163cdebe13004 https://www.encodeproject.org/files/ENCFF142TWW/@@download/ENCFF142TWW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF070WUO bam alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF100BZD, ENCFF435DWE, ENCFF952AQZ 3182934549 ENCODE Processing Pipeline 55d9ed14b1cfbfd40397a6d3bafdb298 https://www.encodeproject.org/files/ENCFF070WUO/@@download/ENCFF070WUO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF659QTJ bed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF142TWW, ENCFF580YCN 2078319 ENCODE Processing Pipeline 48657b34cc5ba5033ec0d84988b66078 https://www.encodeproject.org/files/ENCFF659QTJ/@@download/ENCFF659QTJ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF061UMH bed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF070WUO, ENCFF125FAE, ENCFF580YCN 1956348 ENCODE Processing Pipeline 6c05be9eb8b21fa63ad0618f8ed67c74 https://www.encodeproject.org/files/ENCFF061UMH/@@download/ENCFF061UMH.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF763TGX bed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF070WUO, ENCFF125FAE, ENCFF142TWW, ENCFF580YCN 2550440 ENCODE Processing Pipeline c21d33a98d85918caf3ad8f23cdc89a8 https://www.encodeproject.org/files/ENCFF763TGX/@@download/ENCFF763TGX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF135UVR bigBed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF659QTJ 5068742 ENCODE Processing Pipeline 7b503119706463c46748eb16948e54c0 https://www.encodeproject.org/files/ENCFF135UVR/@@download/ENCFF135UVR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF666QLW bigBed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF061UMH 3802526 ENCODE Processing Pipeline d26b83d8dd64d907a880c059a32496d2 https://www.encodeproject.org/files/ENCFF666QLW/@@download/ENCFF666QLW.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF598HZA bigBed narrowPeak peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF763TGX 5989452 ENCODE Processing Pipeline 7fefe9b95562ce6d343e13dce716b669 https://www.encodeproject.org/files/ENCFF598HZA/@@download/ENCFF598HZA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF937AUH bigWig signal p-value ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF142TWW, ENCFF580YCN 1266168176 ENCODE Processing Pipeline bd3c72ea7acbe54b3ce9060473b7108f https://www.encodeproject.org/files/ENCFF937AUH/@@download/ENCFF937AUH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF139GSK bigWig signal p-value ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF070WUO, ENCFF125FAE, ENCFF580YCN 1147857029 ENCODE Processing Pipeline abfd4d4dac668c3ca44f791c1073be78 https://www.encodeproject.org/files/ENCFF139GSK/@@download/ENCFF139GSK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF478MNG bigWig signal p-value ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF070WUO, ENCFF125FAE, ENCFF142TWW, ENCFF580YCN 1708047644 ENCODE Processing Pipeline 13c011ddaf13dda4adb2db58b9d508f9 https://www.encodeproject.org/files/ENCFF478MNG/@@download/ENCFF478MNG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF361DZJ bigWig fold change over control ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF142TWW, ENCFF580YCN 1267677469 ENCODE Processing Pipeline 08b272bbd653662a061bb5046fa17aef https://www.encodeproject.org/files/ENCFF361DZJ/@@download/ENCFF361DZJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF227ECE bigWig fold change over control ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF070WUO, ENCFF125FAE, ENCFF580YCN 1211869757 ENCODE Processing Pipeline 3810138582346628d4e8289fc47cdafd https://www.encodeproject.org/files/ENCFF227ECE/@@download/ENCFF227ECE.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF966UNT bigWig fold change over control ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF070WUO, ENCFF125FAE, ENCFF142TWW, ENCFF580YCN 1724645153 ENCODE Processing Pipeline e1e90b014e80dad8b7ec44f57911eebe https://www.encodeproject.org/files/ENCFF966UNT/@@download/ENCFF966UNT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF864IHQ bed narrowPeak replicated peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF061UMH, ENCFF659QTJ, ENCFF763TGX 1598650 ENCODE Processing Pipeline 17b513ded9b53a397917da6047c1ef93 https://www.encodeproject.org/files/ENCFF864IHQ/@@download/ENCFF864IHQ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF059QKB bigBed narrowPeak replicated peaks ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF864IHQ 3149271 ENCODE Processing Pipeline 568bb029e06f3b76c26d4f87b194cbcd https://www.encodeproject.org/files/ENCFF059QKB/@@download/ENCFF059QKB.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF304FXZ bam alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF054WZL, ENCFF260JFF, ENCFF806TVZ 2618921854 ENCODE Processing Pipeline e40745bf52a1bb6c7cb0bb516d4ab410 https://www.encodeproject.org/files/ENCFF304FXZ/@@download/ENCFF304FXZ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF260JFF fastq reads ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 138951572 Bing Ren, UCSD 13819d8da39a3b05da0a0f666d09e4c0 SRA:SRR3651925 https://www.encodeproject.org/files/ENCFF260JFF/@@download/ENCFF260JFF.fastq.gz Illumina HiSeq 2500 /files/ENCFF418BAW/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF054WZL fastq reads ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2765798675 Bing Ren, UCSD b7e20ec300f2fbad9d2d3f71607186a8 SRA:SRR3651926 https://www.encodeproject.org/files/ENCFF054WZL/@@download/ENCFF054WZL.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF499YDW fastq reads ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3089531866 Bing Ren, UCSD 3976b02b454ea78bf4e38c28b2f3f1fb SRA:SRR3651927 https://www.encodeproject.org/files/ENCFF499YDW/@@download/ENCFF499YDW.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF013FXY bam alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF499YDW, ENCFF806TVZ 2819862658 ENCODE Processing Pipeline 001ec22bd0c7ebbc9030fe52c5c9e959 https://www.encodeproject.org/files/ENCFF013FXY/@@download/ENCFF013FXY.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF618AAM bed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF013FXY, ENCFF304FXZ, ENCFF455EJT, ENCFF844LBC 3199982 ENCODE Processing Pipeline 85959a88935085c2d51eedfd93c40f38 https://www.encodeproject.org/files/ENCFF618AAM/@@download/ENCFF618AAM.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF136IUM bed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF013FXY, ENCFF455EJT, ENCFF844LBC 3574175 ENCODE Processing Pipeline f180aff5e8890df9c33f2c54fb38a86b https://www.encodeproject.org/files/ENCFF136IUM/@@download/ENCFF136IUM.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF456JFF bigBed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF136IUM 9273623 ENCODE Processing Pipeline 85c5f7f6a33e3b26f83284096b16235a https://www.encodeproject.org/files/ENCFF456JFF/@@download/ENCFF456JFF.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF109VCS bed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF304FXZ, ENCFF455EJT, ENCFF844LBC 3411727 ENCODE Processing Pipeline 2f6a7c8b9a64c7199ae50260411ea225 https://www.encodeproject.org/files/ENCFF109VCS/@@download/ENCFF109VCS.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF714IPY bigBed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF109VCS 8925583 ENCODE Processing Pipeline bcbc17d5831a524f3562473a4ccb0581 https://www.encodeproject.org/files/ENCFF714IPY/@@download/ENCFF714IPY.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF997CHH bigBed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF618AAM 8410073 ENCODE Processing Pipeline d8799cdde14839f153e223ab1f170157 https://www.encodeproject.org/files/ENCFF997CHH/@@download/ENCFF997CHH.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF072VIH bigWig signal p-value ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF013FXY, ENCFF455EJT, ENCFF844LBC 944615475 ENCODE Processing Pipeline db8ce745eb65b2f6f549cd664e9f74f9 https://www.encodeproject.org/files/ENCFF072VIH/@@download/ENCFF072VIH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF124OBG bigWig signal p-value ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF304FXZ, ENCFF455EJT, ENCFF844LBC 993372672 ENCODE Processing Pipeline a6a1c9dff1bbfb2005509370f2413e46 https://www.encodeproject.org/files/ENCFF124OBG/@@download/ENCFF124OBG.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF190UAG bigWig signal p-value ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF013FXY, ENCFF304FXZ, ENCFF455EJT, ENCFF844LBC 1226754011 ENCODE Processing Pipeline d7f8b85c8f24e685e6967518abb4d513 https://www.encodeproject.org/files/ENCFF190UAG/@@download/ENCFF190UAG.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF542JJZ bigWig fold change over control ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF013FXY, ENCFF455EJT, ENCFF844LBC 1028527071 ENCODE Processing Pipeline f935dd25451e70d40bc32f587316744d https://www.encodeproject.org/files/ENCFF542JJZ/@@download/ENCFF542JJZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF643DQB bigWig fold change over control ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF304FXZ, ENCFF455EJT, ENCFF844LBC 987320910 ENCODE Processing Pipeline bcd246bce5e17e2cd36c1bb4092e6a51 https://www.encodeproject.org/files/ENCFF643DQB/@@download/ENCFF643DQB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF805SQC bed narrowPeak replicated peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF109VCS, ENCFF136IUM, ENCFF618AAM 3407369 ENCODE Processing Pipeline ddb9d352bed9f5942618a7b1fbabb8e2 https://www.encodeproject.org/files/ENCFF805SQC/@@download/ENCFF805SQC.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF955OPX bigWig fold change over control ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF013FXY, ENCFF304FXZ, ENCFF455EJT, ENCFF844LBC 1568590121 ENCODE Processing Pipeline 1ed9a0a422f7d683a05d35b097dadf39 https://www.encodeproject.org/files/ENCFF955OPX/@@download/ENCFF955OPX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF930GLS bigBed narrowPeak replicated peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF805SQC 7008328 ENCODE Processing Pipeline 0c86c74da9fdbb0883b726040921f4ad https://www.encodeproject.org/files/ENCFF930GLS/@@download/ENCFF930GLS.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF450MRK bam unfiltered alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF499YDW 3634252966 ENCODE Processing Pipeline dd3f70228881e86899d28bd3a74c1217 https://www.encodeproject.org/files/ENCFF450MRK/@@download/ENCFF450MRK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF927HSA bam unfiltered alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF054WZL, ENCFF260JFF 3453280250 ENCODE Processing Pipeline d1498f98ce3e2f80af90a55c8180547a https://www.encodeproject.org/files/ENCFF927HSA/@@download/ENCFF927HSA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF500REJ bam alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF054WZL, ENCFF260JFF 2618377989 ENCODE Processing Pipeline d752eff41179f6b32eaf11119050ad50 https://www.encodeproject.org/files/ENCFF500REJ/@@download/ENCFF500REJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF993UQZ bam alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF499YDW 2819284982 ENCODE Processing Pipeline df0bf0e6b63898879005a980610ff9bb https://www.encodeproject.org/files/ENCFF993UQZ/@@download/ENCFF993UQZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF485FUW bed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF993UQZ 3705074 ENCODE Processing Pipeline 4b59421014afa9deefc96cfe586304cc https://www.encodeproject.org/files/ENCFF485FUW/@@download/ENCFF485FUW.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF622SAR bed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF500REJ 3069676 ENCODE Processing Pipeline f1358e79554b4f166f00cfce29b32039 https://www.encodeproject.org/files/ENCFF622SAR/@@download/ENCFF622SAR.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF141RSF bed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF500REJ, ENCFF993UQZ 3879221 ENCODE Processing Pipeline 38cf9d0c10b6bb8bbfa3c7b7b8f5333a https://www.encodeproject.org/files/ENCFF141RSF/@@download/ENCFF141RSF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF094SIB bigBed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF485FUW 9637761 ENCODE Processing Pipeline dbb870c4d12ab2d24e6fc60416af4f2c https://www.encodeproject.org/files/ENCFF094SIB/@@download/ENCFF094SIB.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF475QPM bigBed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF622SAR 8195052 ENCODE Processing Pipeline 045027c99ae2f500a389e03052696d5b https://www.encodeproject.org/files/ENCFF475QPM/@@download/ENCFF475QPM.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF791LYA bigBed narrowPeak peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF141RSF 10123491 ENCODE Processing Pipeline 70ec636b1ffb8561b3fff11910b0a5d3 https://www.encodeproject.org/files/ENCFF791LYA/@@download/ENCFF791LYA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF389WTD bigWig signal p-value ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF993UQZ 1062671377 ENCODE Processing Pipeline 4720f4a8ce52bc5fc87146949089b531 https://www.encodeproject.org/files/ENCFF389WTD/@@download/ENCFF389WTD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF579SLD bigWig signal p-value ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF500REJ 626130044 ENCODE Processing Pipeline 1d312f341b9ff5a586a2bc0e4f2081d9 https://www.encodeproject.org/files/ENCFF579SLD/@@download/ENCFF579SLD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF901LYD bigWig signal p-value ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF500REJ, ENCFF993UQZ 1619324738 ENCODE Processing Pipeline 17de7646a8b428e2f5754924b4c2b4c8 https://www.encodeproject.org/files/ENCFF901LYD/@@download/ENCFF901LYD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF510ARA bigWig fold change over control ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF993UQZ 1184155839 ENCODE Processing Pipeline f3f39288ad651f260fb0aec184dafddf https://www.encodeproject.org/files/ENCFF510ARA/@@download/ENCFF510ARA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF276ORJ bigWig fold change over control ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF500REJ 900805206 ENCODE Processing Pipeline 10b892808d0cf7ca2d4f97b483a8e885 https://www.encodeproject.org/files/ENCFF276ORJ/@@download/ENCFF276ORJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF429OYS bigWig fold change over control ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF500REJ, ENCFF993UQZ 1659506064 ENCODE Processing Pipeline 01c0c76ba30d45a7b5e5311b4fa7e47c https://www.encodeproject.org/files/ENCFF429OYS/@@download/ENCFF429OYS.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF879SPX bed narrowPeak replicated peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF141RSF, ENCFF485FUW, ENCFF622SAR 3305092 ENCODE Processing Pipeline b078848f83f00520af85ea030535c8e5 https://www.encodeproject.org/files/ENCFF879SPX/@@download/ENCFF879SPX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF808SGI bigBed narrowPeak replicated peaks ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF879SPX 6667906 ENCODE Processing Pipeline 2fce9a51d9a69ea10978a80ed3cbaa0f https://www.encodeproject.org/files/ENCFF808SGI/@@download/ENCFF808SGI.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KEJ bigBed broadPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XWU 645002 Bing Ren, UCSD 2da1fa0e1f93e676eb2f68bc393fa339 https://www.encodeproject.org/files/ENCFF001KEJ/@@download/ENCFF001KEJ.bigBed mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001KEK bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KER 643796193 Bing Ren, UCSD a1a9ca8618e824a2350c606239cd3027 https://www.encodeproject.org/files/ENCFF001KEK/@@download/ENCFF001KEK.bam mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001KEL bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEQ 641295780 Bing Ren, UCSD c4b5968fef388f92f8146c818338eaf8 https://www.encodeproject.org/files/ENCFF001KEL/@@download/ENCFF001KEL.bam mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001KEM bigWig signal ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KEK, ENCFF001KEL 30676817 Bing Ren, UCSD 570ab75f95582f9e0428567bed9f5bbb https://www.encodeproject.org/files/ENCFF001KEM/@@download/ENCFF001KEM.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001KEQ fastq reads ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 736382388 Bing Ren, UCSD 4d7cedb9585ebf984eb576a133ab0ac6 https://www.encodeproject.org/files/ENCFF001KEQ/@@download/ENCFF001KEQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001KER fastq reads ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 735996297 Bing Ren, UCSD c3b77e64ca373218eba3886e66bfad79 https://www.encodeproject.org/files/ENCFF001KER/@@download/ENCFF001KER.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001XWU bed broadPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KEK, ENCFF001KEL 378187 Bing Ren, UCSD 5858e702ffc014dfdd142c821fcf60e3 https://www.encodeproject.org/files/ENCFF001XWU/@@download/ENCFF001XWU.bed.gz mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF418VQQ bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KER, ENCFF806TVZ 500028756 ENCODE Processing Pipeline b719555315a4113f3e8b1217363dfc50 https://www.encodeproject.org/files/ENCFF418VQQ/@@download/ENCFF418VQQ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF486NLV bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEQ, ENCFF806TVZ 496270809 ENCODE Processing Pipeline c027f06e307888206fb3892fcb88aaa2 https://www.encodeproject.org/files/ENCFF486NLV/@@download/ENCFF486NLV.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF121EXX bigWig signal p-value ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF343KWM, ENCFF418VQQ, ENCFF749CPB 389752978 ENCODE Processing Pipeline f994cd61d96c95351c8e25f474d9ac5e https://www.encodeproject.org/files/ENCFF121EXX/@@download/ENCFF121EXX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF028LHK bed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF343KWM, ENCFF418VQQ, ENCFF749CPB 1161300 ENCODE Processing Pipeline 9ce661d7a837e20cb762228307cf1bf2 https://www.encodeproject.org/files/ENCFF028LHK/@@download/ENCFF028LHK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF791QCP bed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF343KWM, ENCFF486NLV, ENCFF749CPB 1121908 ENCODE Processing Pipeline f94a565292b60718b89455e2a6030f5a https://www.encodeproject.org/files/ENCFF791QCP/@@download/ENCFF791QCP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF243CZI bigBed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF028LHK 3385274 ENCODE Processing Pipeline 9faa4ee2abe277aa4bbae0f5dc3084f8 https://www.encodeproject.org/files/ENCFF243CZI/@@download/ENCFF243CZI.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF881DLA bed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF343KWM, ENCFF418VQQ, ENCFF486NLV, ENCFF749CPB 1201348 ENCODE Processing Pipeline 867c2ceaf06178d90bd6e48f153278ca https://www.encodeproject.org/files/ENCFF881DLA/@@download/ENCFF881DLA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF762ODX bigBed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF791QCP 3259679 ENCODE Processing Pipeline 02a746bcb53a59597f0d140efd5da3ce https://www.encodeproject.org/files/ENCFF762ODX/@@download/ENCFF762ODX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF525LOW bigWig signal p-value ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF343KWM, ENCFF486NLV, ENCFF749CPB 377194904 ENCODE Processing Pipeline 8e4ea872a0b2c9b6a43f7519bdcd8299 https://www.encodeproject.org/files/ENCFF525LOW/@@download/ENCFF525LOW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF638OJI bigWig fold change over control ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF343KWM, ENCFF418VQQ, ENCFF749CPB 218412510 ENCODE Processing Pipeline 7727039d55ca691c6feac9c965c4446c https://www.encodeproject.org/files/ENCFF638OJI/@@download/ENCFF638OJI.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF033NRP bigBed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF881DLA 3398701 ENCODE Processing Pipeline b611e7af4a491a187994d04506918f7e https://www.encodeproject.org/files/ENCFF033NRP/@@download/ENCFF033NRP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF919CVC bigWig signal p-value ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF343KWM, ENCFF418VQQ, ENCFF486NLV, ENCFF749CPB 430978405 ENCODE Processing Pipeline 78ff4aa6b408571bfcece976bde2c01a https://www.encodeproject.org/files/ENCFF919CVC/@@download/ENCFF919CVC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF975BUE bed narrowPeak replicated peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF028LHK, ENCFF791QCP, ENCFF881DLA 1464058 ENCODE Processing Pipeline 1f8537ae3d99a9b3066ce4a9926bea47 https://www.encodeproject.org/files/ENCFF975BUE/@@download/ENCFF975BUE.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF123ZRY bigBed narrowPeak replicated peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF975BUE 2964098 ENCODE Processing Pipeline ad79ba1bcb549613b3280bb01be13e87 https://www.encodeproject.org/files/ENCFF123ZRY/@@download/ENCFF123ZRY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF468YPP bigWig fold change over control ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF343KWM, ENCFF486NLV, ENCFF749CPB 213289251 ENCODE Processing Pipeline add0ee44cee17f485bda91b6aeba1a1f https://www.encodeproject.org/files/ENCFF468YPP/@@download/ENCFF468YPP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF627ZLU bigWig fold change over control ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF343KWM, ENCFF418VQQ, ENCFF486NLV, ENCFF749CPB 331248578 ENCODE Processing Pipeline 8ad4380547f8a4c4fdb84afd93805e52 https://www.encodeproject.org/files/ENCFF627ZLU/@@download/ENCFF627ZLU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF246IWX bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEQ, ENCFF018NEO 496236444 ENCODE Processing Pipeline a09d65ec8c5a0d2501304d88a0ea85c1 https://www.encodeproject.org/files/ENCFF246IWX/@@download/ENCFF246IWX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF017QQB bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KER, ENCFF018NEO 500017189 ENCODE Processing Pipeline f3cb8a639bf5e36df586b9d1303cae8b https://www.encodeproject.org/files/ENCFF017QQB/@@download/ENCFF017QQB.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF250CHU bed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF246IWX, ENCFF439WCI, ENCFF683TKC 1122755 ENCODE Processing Pipeline 417a4c2b3ca339fee048d999186fe8f5 https://www.encodeproject.org/files/ENCFF250CHU/@@download/ENCFF250CHU.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF780YHE bigBed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF422YVG 3386887 ENCODE Processing Pipeline a8397ddd024154ea89349dfc0d8a868e https://www.encodeproject.org/files/ENCFF780YHE/@@download/ENCFF780YHE.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF632IGZ bigBed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF250CHU 3261586 ENCODE Processing Pipeline 8999e55dee1a47113a512fb4b8c92965 https://www.encodeproject.org/files/ENCFF632IGZ/@@download/ENCFF632IGZ.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF422YVG bed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF017QQB, ENCFF439WCI, ENCFF683TKC 1162088 ENCODE Processing Pipeline f070cd8a082226114fa98335d1d5533f https://www.encodeproject.org/files/ENCFF422YVG/@@download/ENCFF422YVG.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF671UNN bed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF017QQB, ENCFF246IWX, ENCFF439WCI, ENCFF683TKC 1192506 ENCODE Processing Pipeline 331e589d9c9b718bf2ef5f9a37f8f686 https://www.encodeproject.org/files/ENCFF671UNN/@@download/ENCFF671UNN.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF400OCP bigWig signal p-value ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF017QQB, ENCFF439WCI, ENCFF683TKC 367667930 ENCODE Processing Pipeline 23c145d590845ddf0288b2468511ca67 https://www.encodeproject.org/files/ENCFF400OCP/@@download/ENCFF400OCP.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF619XDG bigBed narrowPeak peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF671UNN 3355891 ENCODE Processing Pipeline 251183c2430a64a0bc4018d2fafa959d https://www.encodeproject.org/files/ENCFF619XDG/@@download/ENCFF619XDG.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF561MCV bigWig signal p-value ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF246IWX, ENCFF439WCI, ENCFF683TKC 358357823 ENCODE Processing Pipeline 0a0fab380c82c910e2c5eea0753fdf6b https://www.encodeproject.org/files/ENCFF561MCV/@@download/ENCFF561MCV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF611GSQ bigWig signal p-value ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF017QQB, ENCFF246IWX, ENCFF439WCI, ENCFF683TKC 436223086 ENCODE Processing Pipeline 2ff46d29ebe5a00778b37565a99832f0 https://www.encodeproject.org/files/ENCFF611GSQ/@@download/ENCFF611GSQ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF391YIC bigWig fold change over control ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF246IWX, ENCFF439WCI, ENCFF683TKC 213161014 ENCODE Processing Pipeline d6541138fbfadf5bb705e396bd969e67 https://www.encodeproject.org/files/ENCFF391YIC/@@download/ENCFF391YIC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF247GVM bed narrowPeak replicated peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF250CHU, ENCFF422YVG, ENCFF671UNN 1454894 ENCODE Processing Pipeline b50962df0cfe9a5770de21b791fce67c https://www.encodeproject.org/files/ENCFF247GVM/@@download/ENCFF247GVM.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF814YVF bigBed narrowPeak replicated peaks ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF247GVM 2944598 ENCODE Processing Pipeline fb4c2a81ef2fe83402c20b318735bfc6 https://www.encodeproject.org/files/ENCFF814YVF/@@download/ENCFF814YVF.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF998GJY bigWig fold change over control ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF017QQB, ENCFF439WCI, ENCFF683TKC 219053021 ENCODE Processing Pipeline 19e27bbcabc214e02c16b2fb5d1d2745 https://www.encodeproject.org/files/ENCFF998GJY/@@download/ENCFF998GJY.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF363JJV bigWig fold change over control ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF017QQB, ENCFF246IWX, ENCFF439WCI, ENCFF683TKC 336843060 ENCODE Processing Pipeline 71ee2cc3426671b3e65ee1c4e96f3c5e https://www.encodeproject.org/files/ENCFF363JJV/@@download/ENCFF363JJV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF335GZI bam unfiltered alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KER, ENCFF806TVZ 768874291 ENCODE Processing Pipeline 894f7431ad085d9a5bdc9a5dce82965c https://www.encodeproject.org/files/ENCFF335GZI/@@download/ENCFF335GZI.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF439DMD bam unfiltered alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEQ, ENCFF018NEO 766846203 ENCODE Processing Pipeline 9636f4c212908d70f5daedcb51ef0d4f https://www.encodeproject.org/files/ENCFF439DMD/@@download/ENCFF439DMD.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF139LJV bam unfiltered alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KER, ENCFF018NEO 769108875 ENCODE Processing Pipeline a3920d07ac87b28cbca6b317ea6f8d9e https://www.encodeproject.org/files/ENCFF139LJV/@@download/ENCFF139LJV.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF224VSY bam unfiltered alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEQ, ENCFF806TVZ 766569119 ENCODE Processing Pipeline 255c5e65838f9cc085978e3290fd1ab5 https://www.encodeproject.org/files/ENCFF224VSY/@@download/ENCFF224VSY.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF223XHF fastq reads ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3100946159 Bing Ren, UCSD df43e4dc21ae798db1324bca243cb496 SRA:SRR3651306 https://www.encodeproject.org/files/ENCFF223XHF/@@download/ENCFF223XHF.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF835CWG fastq reads ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2735034956 Bing Ren, UCSD 69c63d814babd61c2e0c69fed323f57e SRA:SRR3651303 https://www.encodeproject.org/files/ENCFF835CWG/@@download/ENCFF835CWG.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF263OMS bam alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF223XHF, ENCFF806TVZ 2596178757 ENCODE Processing Pipeline 893199fbc0b3c001a5c92f101f2be4d2 https://www.encodeproject.org/files/ENCFF263OMS/@@download/ENCFF263OMS.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF667WJC bam alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF835CWG 2124555683 ENCODE Processing Pipeline 0ff52260e1d8ba083987c443c258adab https://www.encodeproject.org/files/ENCFF667WJC/@@download/ENCFF667WJC.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF293FQT bam unfiltered alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF223XHF 3772907768 ENCODE Processing Pipeline c7672e7816dc8ca352175f6c37e3e771 https://www.encodeproject.org/files/ENCFF293FQT/@@download/ENCFF293FQT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF031OYA bam alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF223XHF 2595493157 ENCODE Processing Pipeline 96e01a9e46ff2f0afc11c262dbda171e https://www.encodeproject.org/files/ENCFF031OYA/@@download/ENCFF031OYA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF448VOB fastq reads ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 303892799 Bing Ren, UCSD 0c280f5cbcc5e16b09a0a64beb5ad7ab SRA:SRR3651304 https://www.encodeproject.org/files/ENCFF448VOB/@@download/ENCFF448VOB.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF528TKO fastq reads ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 830365087 Bing Ren, UCSD df38ee5348ae2565915892b6e17d436d SRA:SRR3651305 https://www.encodeproject.org/files/ENCFF528TKO/@@download/ENCFF528TKO.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF514GVM bam alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF448VOB, ENCFF528TKO, ENCFF835CWG 3291859273 ENCODE Processing Pipeline 7d360b14ac2692d1bcbb7ae14435d30a https://www.encodeproject.org/files/ENCFF514GVM/@@download/ENCFF514GVM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF326OAB bam unfiltered alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF448VOB, ENCFF528TKO, ENCFF835CWG 4975912951 ENCODE Processing Pipeline d51ac8d4e8aa126f3ce4944ef99f1324 https://www.encodeproject.org/files/ENCFF326OAB/@@download/ENCFF326OAB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AGO fastq reads ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1336260635 Bing Ren, UCSD ee77296d01818d7ee4b265c4d75b6863 SRA:SRR3651483 https://www.encodeproject.org/files/ENCFF002AGO/@@download/ENCFF002AGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQI/ released low read length, control low read depth insufficient read depth ENCFF002AGQ fastq reads ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1231408084 Bing Ren, UCSD 24cf4e1235c1273ab4b0a1b946861c22 SRA:SRR3651484 https://www.encodeproject.org/files/ENCFF002AGQ/@@download/ENCFF002AGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQJ/ released low read length, control low read depth insufficient read depth ENCFF376PTS bam alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGQ, ENCFF806TVZ 907859206 ENCODE Processing Pipeline 64285b8fce60ac2f2e1b8257beefc200 https://www.encodeproject.org/files/ENCFF376PTS/@@download/ENCFF376PTS.bam mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF404IRT bam alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGO, ENCFF806TVZ 990443249 ENCODE Processing Pipeline 67e7d1d38e15af540f442162c29fbeb4 https://www.encodeproject.org/files/ENCFF404IRT/@@download/ENCFF404IRT.bam mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF967WWL bed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271DZZ, ENCFF376PTS, ENCFF404IRT, ENCFF991ANF 668907 ENCODE Processing Pipeline 0d52365fec0e87d84ad68249ee37cd41 https://www.encodeproject.org/files/ENCFF967WWL/@@download/ENCFF967WWL.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF949TGA bed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF376PTS, ENCFF991ANF 674149 ENCODE Processing Pipeline c71514e94639962888c8ae5b94af31bb https://www.encodeproject.org/files/ENCFF949TGA/@@download/ENCFF949TGA.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF024ZQS bigBed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF627MMZ 1724780 ENCODE Processing Pipeline 82f77e66f12b8152aacafec00d481648 https://www.encodeproject.org/files/ENCFF024ZQS/@@download/ENCFF024ZQS.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF627MMZ bed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF404IRT, ENCFF991ANF 778683 ENCODE Processing Pipeline 2d12a35bac50ee02a887915f92b8c428 https://www.encodeproject.org/files/ENCFF627MMZ/@@download/ENCFF627MMZ.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF902FZV bigBed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF967WWL 1455372 ENCODE Processing Pipeline b3b461c8384018e2906ff6a844164616 https://www.encodeproject.org/files/ENCFF902FZV/@@download/ENCFF902FZV.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF502RMQ bigBed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF949TGA 1610392 ENCODE Processing Pipeline bf3b7a8fe435c03137ca5a92137fa258 https://www.encodeproject.org/files/ENCFF502RMQ/@@download/ENCFF502RMQ.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF851TUH bigWig signal p-value ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF376PTS, ENCFF991ANF 485401108 ENCODE Processing Pipeline a21733bb5c3b80e47a4e2892c3e775ba https://www.encodeproject.org/files/ENCFF851TUH/@@download/ENCFF851TUH.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF134ODL bigWig signal p-value ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF404IRT, ENCFF991ANF 471018693 ENCODE Processing Pipeline 57e7583c411081006167d88813e1ce75 https://www.encodeproject.org/files/ENCFF134ODL/@@download/ENCFF134ODL.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF077SQR bigWig fold change over control ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF376PTS, ENCFF991ANF 470537932 ENCODE Processing Pipeline 931f490b5e40e6fcd26a8aaa808a3658 https://www.encodeproject.org/files/ENCFF077SQR/@@download/ENCFF077SQR.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF298HES bigWig signal p-value ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271DZZ, ENCFF376PTS, ENCFF404IRT, ENCFF991ANF 721946094 ENCODE Processing Pipeline 68c750c8ef8b57c7e38dba3322730321 https://www.encodeproject.org/files/ENCFF298HES/@@download/ENCFF298HES.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF896RUK bigWig fold change over control ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF404IRT, ENCFF991ANF 506034507 ENCODE Processing Pipeline 0557add28245d5fcc390cac403efd928 https://www.encodeproject.org/files/ENCFF896RUK/@@download/ENCFF896RUK.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF052SAT bigWig fold change over control ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271DZZ, ENCFF376PTS, ENCFF404IRT, ENCFF991ANF 759823087 ENCODE Processing Pipeline 09340dd4cdffb4256b7066fc138d4f73 https://www.encodeproject.org/files/ENCFF052SAT/@@download/ENCFF052SAT.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF293ZIL bigBed narrowPeak replicated peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF343BFI 913957 ENCODE Processing Pipeline 7b9efa8e1af34e05cd9635fb47a6c9bf https://www.encodeproject.org/files/ENCFF293ZIL/@@download/ENCFF293ZIL.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF343BFI bed narrowPeak replicated peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF627MMZ, ENCFF949TGA, ENCFF967WWL 371766 ENCODE Processing Pipeline 32f9e42d77ad6c51213c83dcfb7de2f9 https://www.encodeproject.org/files/ENCFF343BFI/@@download/ENCFF343BFI.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth ENCFF720EXQ bam unfiltered alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGQ, ENCFF018NEO 1349053181 ENCODE Processing Pipeline 8144348aa267f83bdb01d158a0d9ef30 https://www.encodeproject.org/files/ENCFF720EXQ/@@download/ENCFF720EXQ.bam mm10 released low read length, control low read depth insufficient read depth ENCFF537SKM bam unfiltered alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGO, ENCFF018NEO 1455088095 ENCODE Processing Pipeline 38605e88071d442fa202acd6078095ce https://www.encodeproject.org/files/ENCFF537SKM/@@download/ENCFF537SKM.bam mm10 released low read length, control low read depth insufficient read depth ENCFF338KYU bam alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGQ, ENCFF018NEO 907600759 ENCODE Processing Pipeline d641da69f9870c1eed68f4961c9bafb7 https://www.encodeproject.org/files/ENCFF338KYU/@@download/ENCFF338KYU.bam mm10 released low read length, control low read depth insufficient read depth ENCFF891ETM bam alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGO, ENCFF018NEO 990207437 ENCODE Processing Pipeline b4fa141f0996548885aef5f593b7ea49 https://www.encodeproject.org/files/ENCFF891ETM/@@download/ENCFF891ETM.bam mm10 released low read length, control low read depth insufficient read depth ENCFF351GRM bed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF338KYU, ENCFF688CVA, ENCFF945UFA 673998 ENCODE Processing Pipeline 8da6c01ca4cc728380bf85bd0992f4a0 https://www.encodeproject.org/files/ENCFF351GRM/@@download/ENCFF351GRM.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF439IBS bed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF338KYU, ENCFF688CVA, ENCFF891ETM, ENCFF945UFA 649488 ENCODE Processing Pipeline 0343775ee27743c911ad1a28e304535e https://www.encodeproject.org/files/ENCFF439IBS/@@download/ENCFF439IBS.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF711RRR bed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF891ETM, ENCFF945UFA 749472 ENCODE Processing Pipeline 7ae8674d1b2ca75b17c213b796db8818 https://www.encodeproject.org/files/ENCFF711RRR/@@download/ENCFF711RRR.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF324LIE bigBed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351GRM 1609906 ENCODE Processing Pipeline 1b6e64ea6aae87881755ade836cd3eae https://www.encodeproject.org/files/ENCFF324LIE/@@download/ENCFF324LIE.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF176WPX bigBed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF711RRR 1668681 ENCODE Processing Pipeline fd97965782d96eea9e1bec1ff8d43e6c https://www.encodeproject.org/files/ENCFF176WPX/@@download/ENCFF176WPX.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF217GDZ bigBed narrowPeak peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF439IBS 1776634 ENCODE Processing Pipeline f3b63e2914ac71998169e4ff1c63ecd3 https://www.encodeproject.org/files/ENCFF217GDZ/@@download/ENCFF217GDZ.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF891RLA bigWig signal p-value ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF338KYU, ENCFF688CVA, ENCFF945UFA 457605502 ENCODE Processing Pipeline ebb196c170c79d13bc5667f234c6a618 https://www.encodeproject.org/files/ENCFF891RLA/@@download/ENCFF891RLA.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF441YGW bigWig signal p-value ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF891ETM, ENCFF945UFA 571343498 ENCODE Processing Pipeline 0b63ba023c61e3fbec1da9824ba93e26 https://www.encodeproject.org/files/ENCFF441YGW/@@download/ENCFF441YGW.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF380YNR bigWig signal p-value ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF338KYU, ENCFF688CVA, ENCFF891ETM, ENCFF945UFA 759323593 ENCODE Processing Pipeline 3402e1a8b137705d34b6341de3ae3aed https://www.encodeproject.org/files/ENCFF380YNR/@@download/ENCFF380YNR.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF866JXA bigWig fold change over control ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF338KYU, ENCFF688CVA, ENCFF945UFA 470361911 ENCODE Processing Pipeline 2256539b04fb139f3e58cb98237ef1ab https://www.encodeproject.org/files/ENCFF866JXA/@@download/ENCFF866JXA.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF483CPP bigWig fold change over control ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF891ETM, ENCFF945UFA 533331448 ENCODE Processing Pipeline c566261e820e54bea65c03bcbcd12b41 https://www.encodeproject.org/files/ENCFF483CPP/@@download/ENCFF483CPP.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF164GUC bigWig fold change over control ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF338KYU, ENCFF688CVA, ENCFF891ETM, ENCFF945UFA 803896167 ENCODE Processing Pipeline ac87ec622560cb3b44bf590841934aeb https://www.encodeproject.org/files/ENCFF164GUC/@@download/ENCFF164GUC.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF061WET bed narrowPeak replicated peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351GRM, ENCFF439IBS, ENCFF711RRR 409152 ENCODE Processing Pipeline 79a2d6442173ab6dfccb4d4d83fae9c1 https://www.encodeproject.org/files/ENCFF061WET/@@download/ENCFF061WET.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF116UKV bigBed narrowPeak replicated peaks ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF061WET 995321 ENCODE Processing Pipeline b2b23df69d352d460c0a7d5a3e72741d https://www.encodeproject.org/files/ENCFF116UKV/@@download/ENCFF116UKV.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF834BNS fastq reads ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2894122154 Bing Ren, UCSD 544005739289c88e474b37f7d3519b6d SRA:SRR3651729 https://www.encodeproject.org/files/ENCFF834BNS/@@download/ENCFF834BNS.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF660YBH fastq reads ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3130753131 Bing Ren, UCSD 845a26cc3acf1879313a1ef8f6a26433 SRA:SRR3651727 https://www.encodeproject.org/files/ENCFF660YBH/@@download/ENCFF660YBH.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF958NFC fastq reads ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1523534998 Bing Ren, UCSD e8b6ac8bbaffddb66e7580a08f76b413 SRA:SRR3651728 https://www.encodeproject.org/files/ENCFF958NFC/@@download/ENCFF958NFC.fastq.gz Illumina HiSeq 2500 /files/ENCFF223XHF/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF515QMT fastq reads ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1394943082 Bing Ren, UCSD 42efd13c4bcf17f2783d68b0ef3819ad SRA:SRR3651730 https://www.encodeproject.org/files/ENCFF515QMT/@@download/ENCFF515QMT.fastq.gz Illumina HiSeq 2500 /files/ENCFF835CWG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF408KND bam alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF660YBH, ENCFF806TVZ, ENCFF958NFC 3336309597 ENCODE Processing Pipeline 91259854665f6de9dd475b52a593c917 https://www.encodeproject.org/files/ENCFF408KND/@@download/ENCFF408KND.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF946RYX bam alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF515QMT, ENCFF806TVZ, ENCFF834BNS 3116884974 ENCODE Processing Pipeline 40db6a4b9137579b488ee6e42a1d3507 https://www.encodeproject.org/files/ENCFF946RYX/@@download/ENCFF946RYX.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF513QVP bed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF408KND, ENCFF667WJC 2595970 ENCODE Processing Pipeline ff14f8fb10d76feec8cb609884c74744 https://www.encodeproject.org/files/ENCFF513QVP/@@download/ENCFF513QVP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF999ESO bed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF946RYX 3006953 ENCODE Processing Pipeline 8cd285338fa2f3d2c27a79f3d97f0594 https://www.encodeproject.org/files/ENCFF999ESO/@@download/ENCFF999ESO.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF966UAK bigBed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF513QVP 5854676 ENCODE Processing Pipeline 1fbd3622118223ed26ef9903479c7bf1 https://www.encodeproject.org/files/ENCFF966UAK/@@download/ENCFF966UAK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF724VKP bed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF408KND, ENCFF667WJC, ENCFF946RYX 2669632 ENCODE Processing Pipeline 6169db6a369ff2aab473f920cdc95858 https://www.encodeproject.org/files/ENCFF724VKP/@@download/ENCFF724VKP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF941JSV bigBed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF999ESO 6513676 ENCODE Processing Pipeline a9c9505784c4ffd2ce0d8ac774fef348 https://www.encodeproject.org/files/ENCFF941JSV/@@download/ENCFF941JSV.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF180DEM bigBed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF724VKP 5736202 ENCODE Processing Pipeline c02e852a49676638e2c5f4d1b48ca351 https://www.encodeproject.org/files/ENCFF180DEM/@@download/ENCFF180DEM.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF182NZE bigWig signal p-value ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF408KND, ENCFF667WJC 1008515842 ENCODE Processing Pipeline d3331be640bc1a50e8b05e25d18c7791 https://www.encodeproject.org/files/ENCFF182NZE/@@download/ENCFF182NZE.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF580QKC bigWig signal p-value ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF946RYX 1006949334 ENCODE Processing Pipeline 4db454ac9c1719e489b42a3d260e4ed6 https://www.encodeproject.org/files/ENCFF580QKC/@@download/ENCFF580QKC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF313MTF bigWig signal p-value ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF408KND, ENCFF667WJC, ENCFF946RYX 1249646713 ENCODE Processing Pipeline 79f9a96f780e0f37298e5d871264d4e4 https://www.encodeproject.org/files/ENCFF313MTF/@@download/ENCFF313MTF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF316KAB bigWig fold change over control ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF408KND, ENCFF667WJC 1129729774 ENCODE Processing Pipeline f35a8498c570bf8b70da5c4e8fe4ef50 https://www.encodeproject.org/files/ENCFF316KAB/@@download/ENCFF316KAB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF069JFC bigWig fold change over control ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF667WJC, ENCFF946RYX 1072482026 ENCODE Processing Pipeline 8896ab9a9be45243109223d084f7d841 https://www.encodeproject.org/files/ENCFF069JFC/@@download/ENCFF069JFC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF730ECK bigWig fold change over control ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF408KND, ENCFF667WJC, ENCFF946RYX 1559775400 ENCODE Processing Pipeline c4472c761284c64670f37df6a45ef509 https://www.encodeproject.org/files/ENCFF730ECK/@@download/ENCFF730ECK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF595TZZ bigBed narrowPeak replicated peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF884YTN 4177013 ENCODE Processing Pipeline e6031686df05d5b42d21083cc12654b1 https://www.encodeproject.org/files/ENCFF595TZZ/@@download/ENCFF595TZZ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF884YTN bed narrowPeak replicated peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF513QVP, ENCFF724VKP, ENCFF999ESO 2368627 ENCODE Processing Pipeline fd8b3c0c6471a6883e7419725302fe39 https://www.encodeproject.org/files/ENCFF884YTN/@@download/ENCFF884YTN.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF053CDT bam unfiltered alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF515QMT, ENCFF834BNS 5073773788 ENCODE Processing Pipeline 6108b8e63cd76d78ad9976f66331c445 https://www.encodeproject.org/files/ENCFF053CDT/@@download/ENCFF053CDT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF474VPJ bam unfiltered alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF660YBH, ENCFF958NFC 5500573477 ENCODE Processing Pipeline 6ea811836bba28cde75f9d7eefe9d177 https://www.encodeproject.org/files/ENCFF474VPJ/@@download/ENCFF474VPJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF874IUF bam alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF660YBH, ENCFF958NFC 3335595886 ENCODE Processing Pipeline 650d768103c0f044296a6225203d9c6d https://www.encodeproject.org/files/ENCFF874IUF/@@download/ENCFF874IUF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF497DWP bam alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF515QMT, ENCFF834BNS 3116230981 ENCODE Processing Pipeline 8f0ed70de36375f606c50faec96a8876 https://www.encodeproject.org/files/ENCFF497DWP/@@download/ENCFF497DWP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF356TVP bed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF874IUF 2643076 ENCODE Processing Pipeline eb9eddae97c62ef275503413cd372429 https://www.encodeproject.org/files/ENCFF356TVP/@@download/ENCFF356TVP.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF036NKN bed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF497DWP, ENCFF514GVM 3005040 ENCODE Processing Pipeline 2e4db0d75afdfcb98a371da344afecf8 https://www.encodeproject.org/files/ENCFF036NKN/@@download/ENCFF036NKN.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF194VEI bed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF497DWP, ENCFF514GVM, ENCFF874IUF 2877082 ENCODE Processing Pipeline 666412c358d232c09eaea64717cc3cf4 https://www.encodeproject.org/files/ENCFF194VEI/@@download/ENCFF194VEI.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF099XNI bigBed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF036NKN 6527514 ENCODE Processing Pipeline 65f97028d26aa50b1e3b912a7feff8e2 https://www.encodeproject.org/files/ENCFF099XNI/@@download/ENCFF099XNI.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF668ZAX bigBed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF194VEI 6237713 ENCODE Processing Pipeline bfa876f6def159cea153de5feca3d9fb https://www.encodeproject.org/files/ENCFF668ZAX/@@download/ENCFF668ZAX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF748BCC bigBed narrowPeak peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF356TVP 5923052 ENCODE Processing Pipeline d02762ca9bfb1ec8dd782292d40049fa https://www.encodeproject.org/files/ENCFF748BCC/@@download/ENCFF748BCC.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF279XRJ bigWig signal p-value ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF874IUF 987657718 ENCODE Processing Pipeline 40dfeda9457dceb70fae32bc4d2f3b1b https://www.encodeproject.org/files/ENCFF279XRJ/@@download/ENCFF279XRJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF119JTZ bigWig signal p-value ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF497DWP, ENCFF514GVM 976809315 ENCODE Processing Pipeline f9c74e1f5b50c547e9b60927113ac522 https://www.encodeproject.org/files/ENCFF119JTZ/@@download/ENCFF119JTZ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF510NEC bigWig signal p-value ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF497DWP, ENCFF514GVM, ENCFF874IUF 1617060657 ENCODE Processing Pipeline cd00ac2e361b3b6dba4ffe403dc8e192 https://www.encodeproject.org/files/ENCFF510NEC/@@download/ENCFF510NEC.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF740GMI bigWig fold change over control ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF874IUF 1164929876 ENCODE Processing Pipeline 3d9822a0ed1bf5c9034bb72c7c07458a https://www.encodeproject.org/files/ENCFF740GMI/@@download/ENCFF740GMI.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF190VTA bigWig fold change over control ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF497DWP, ENCFF514GVM 1181583605 ENCODE Processing Pipeline e72dccf72faa36d818a0b42d2b2bd0a9 https://www.encodeproject.org/files/ENCFF190VTA/@@download/ENCFF190VTA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF849QJF bigWig fold change over control ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF497DWP, ENCFF514GVM, ENCFF874IUF 1646081834 ENCODE Processing Pipeline 2c7f450516c736787123fa73496113bc https://www.encodeproject.org/files/ENCFF849QJF/@@download/ENCFF849QJF.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF877AVW bigBed narrowPeak replicated peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF851CNF 4287050 ENCODE Processing Pipeline 06afa11979f79cb329204822d90a9034 https://www.encodeproject.org/files/ENCFF877AVW/@@download/ENCFF877AVW.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF851CNF bed narrowPeak replicated peaks ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF036NKN, ENCFF194VEI, ENCFF356TVP 2452788 ENCODE Processing Pipeline b51d5cd85a374b522e0db693911f28a6 https://www.encodeproject.org/files/ENCFF851CNF/@@download/ENCFF851CNF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AKU fastq reads ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1711262662 Bing Ren, UCSD f3321707d5f6d5643c7aa9ac59c458fa SRA:SRR3651628 https://www.encodeproject.org/files/ENCFF002AKU/@@download/ENCFF002AKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APW/ released moderate library complexity, mild to moderate bottlenecking ENCFF002AKV fastq reads ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2155790880 Bing Ren, UCSD f56857d7cf04f745157628f7deffda94 SRA:SRR3651629 https://www.encodeproject.org/files/ENCFF002AKV/@@download/ENCFF002AKV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released moderate library complexity, mild to moderate bottlenecking ENCFF306PQK bam alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKV, ENCFF806TVZ 1098679730 ENCODE Processing Pipeline 304e850b8680346111200ba3332ac7b2 https://www.encodeproject.org/files/ENCFF306PQK/@@download/ENCFF306PQK.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF902DHA bam alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKU, ENCFF806TVZ 1262535683 ENCODE Processing Pipeline f4b45cbacf69de6e7d782ac1337d0235 https://www.encodeproject.org/files/ENCFF902DHA/@@download/ENCFF902DHA.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF324XTE bed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF716BBX, ENCFF902DHA 810835 ENCODE Processing Pipeline 56d3e690dfd79d212af9a487c46f16db https://www.encodeproject.org/files/ENCFF324XTE/@@download/ENCFF324XTE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF292NJF bed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF306PQK, ENCFF417WKH 862454 ENCODE Processing Pipeline d1170bb65e9c0f3354514f52139d63f9 https://www.encodeproject.org/files/ENCFF292NJF/@@download/ENCFF292NJF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF515KIK bigBed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF324XTE 2564709 ENCODE Processing Pipeline 6b0af65233dbfdb91bd31cf5637df500 https://www.encodeproject.org/files/ENCFF515KIK/@@download/ENCFF515KIK.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF206XRK bigBed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF184GBP 2738907 ENCODE Processing Pipeline 2fc4446701ef82d521dd3d29b4e9cc6a https://www.encodeproject.org/files/ENCFF206XRK/@@download/ENCFF206XRK.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF472MFZ bigBed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF292NJF 2686138 ENCODE Processing Pipeline cf255b2f91913a27d4e642cdd999cd62 https://www.encodeproject.org/files/ENCFF472MFZ/@@download/ENCFF472MFZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF184GBP bed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF306PQK, ENCFF417WKH, ENCFF716BBX, ENCFF902DHA 900770 ENCODE Processing Pipeline adcd4fdeebe1d18dedfd8120c46455a5 https://www.encodeproject.org/files/ENCFF184GBP/@@download/ENCFF184GBP.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF364TCZ bigWig signal p-value ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF716BBX, ENCFF902DHA 398812032 ENCODE Processing Pipeline 8e8828a01c1afafe71c8ff21564e1d21 https://www.encodeproject.org/files/ENCFF364TCZ/@@download/ENCFF364TCZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF122COP bigWig signal p-value ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF306PQK, ENCFF417WKH 397911177 ENCODE Processing Pipeline e4e1b091eb9f74bee21615ce54c79c6d https://www.encodeproject.org/files/ENCFF122COP/@@download/ENCFF122COP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF826GYB bigWig signal p-value ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF306PQK, ENCFF417WKH, ENCFF716BBX, ENCFF902DHA 649942317 ENCODE Processing Pipeline 496ff9477b2c4bdc5133b42a4f073648 https://www.encodeproject.org/files/ENCFF826GYB/@@download/ENCFF826GYB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF149QMX bigWig fold change over control ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF716BBX, ENCFF902DHA 414361539 ENCODE Processing Pipeline a4539667e6816cec3504d4bc3b38d17e https://www.encodeproject.org/files/ENCFF149QMX/@@download/ENCFF149QMX.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF026IUY bigWig fold change over control ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF306PQK, ENCFF417WKH 376421286 ENCODE Processing Pipeline f6da1d454553d3c3836b2f676b27c76d https://www.encodeproject.org/files/ENCFF026IUY/@@download/ENCFF026IUY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF228NFN bigWig fold change over control ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF306PQK, ENCFF417WKH, ENCFF716BBX, ENCFF902DHA 730288939 ENCODE Processing Pipeline 1df2030823f56f1ad22c8e6949293bc9 https://www.encodeproject.org/files/ENCFF228NFN/@@download/ENCFF228NFN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF442WZE bed narrowPeak replicated peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF184GBP, ENCFF292NJF, ENCFF324XTE 1001973 ENCODE Processing Pipeline 4c58256d79a032f9e664535398cd7b41 https://www.encodeproject.org/files/ENCFF442WZE/@@download/ENCFF442WZE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF820EDA bigBed narrowPeak replicated peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF442WZE 2228102 ENCODE Processing Pipeline d6ba7d748a7f339b0bbc3536eb43b89c https://www.encodeproject.org/files/ENCFF820EDA/@@download/ENCFF820EDA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF276LWT bam unfiltered alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKU, ENCFF018NEO 1714781215 ENCODE Processing Pipeline cbbf57c499c83f810b5e611d3fb8c04c https://www.encodeproject.org/files/ENCFF276LWT/@@download/ENCFF276LWT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF683EGU bam unfiltered alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKV, ENCFF018NEO 2044395734 ENCODE Processing Pipeline 67cea6e8b858dc9b66b7b7de13a3c8dc https://www.encodeproject.org/files/ENCFF683EGU/@@download/ENCFF683EGU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF039FZR bam alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKU, ENCFF018NEO 1262420191 ENCODE Processing Pipeline 1d651981b188d37e24f0917894f59790 https://www.encodeproject.org/files/ENCFF039FZR/@@download/ENCFF039FZR.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF037NXI bam alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKV, ENCFF018NEO 1098594764 ENCODE Processing Pipeline 6409344fa3f3d43513ce1a9dd39c7364 https://www.encodeproject.org/files/ENCFF037NXI/@@download/ENCFF037NXI.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF041GEV bed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037NXI, ENCFF271IBK 863182 ENCODE Processing Pipeline 08fea70e6c5fa35d7e8e0d20a1922ef7 https://www.encodeproject.org/files/ENCFF041GEV/@@download/ENCFF041GEV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF180RME bed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF039FZR, ENCFF416UQK 811791 ENCODE Processing Pipeline b2a090ba49474ea011c0f0082a94482d https://www.encodeproject.org/files/ENCFF180RME/@@download/ENCFF180RME.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF834HZT bed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037NXI, ENCFF039FZR, ENCFF271IBK, ENCFF416UQK 909766 ENCODE Processing Pipeline a342df0ecb43102840fd187224f69f13 https://www.encodeproject.org/files/ENCFF834HZT/@@download/ENCFF834HZT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF748QOW bigBed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF180RME 2567316 ENCODE Processing Pipeline ef1816cdb5d75ad43855085e99b0e229 https://www.encodeproject.org/files/ENCFF748QOW/@@download/ENCFF748QOW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF391ZYH bigBed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF041GEV 2688182 ENCODE Processing Pipeline 7361e8e10a51dd659d38b820ecb2b9d3 https://www.encodeproject.org/files/ENCFF391ZYH/@@download/ENCFF391ZYH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF040YJB bigBed narrowPeak peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF834HZT 2749150 ENCODE Processing Pipeline 5a62d1d7dc5cf17ce43b2670a3467b06 https://www.encodeproject.org/files/ENCFF040YJB/@@download/ENCFF040YJB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF994BVD bigWig signal p-value ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF039FZR, ENCFF416UQK 497305537 ENCODE Processing Pipeline 331c06d2895bcb6bad6a443ce7c37f9d https://www.encodeproject.org/files/ENCFF994BVD/@@download/ENCFF994BVD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF020GUL bigWig signal p-value ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037NXI, ENCFF271IBK 475985711 ENCODE Processing Pipeline 1d555ae953675f54968aa2bfc45ea3d4 https://www.encodeproject.org/files/ENCFF020GUL/@@download/ENCFF020GUL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF317ZJY bigWig signal p-value ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037NXI, ENCFF039FZR, ENCFF271IBK, ENCFF416UQK 594843795 ENCODE Processing Pipeline d4da98c6a2b7bc424e4934438ac53a7c https://www.encodeproject.org/files/ENCFF317ZJY/@@download/ENCFF317ZJY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF559PRL bigWig fold change over control ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF039FZR, ENCFF416UQK 413362580 ENCODE Processing Pipeline fdd2945a077916704ed7c7bde860d167 https://www.encodeproject.org/files/ENCFF559PRL/@@download/ENCFF559PRL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF509YRF bigWig fold change over control ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037NXI, ENCFF271IBK 375927362 ENCODE Processing Pipeline d7e2305e6f4ac4bfd5e2c0023a42f8ed https://www.encodeproject.org/files/ENCFF509YRF/@@download/ENCFF509YRF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF791DCG bigWig fold change over control ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037NXI, ENCFF039FZR, ENCFF271IBK, ENCFF416UQK 746056915 ENCODE Processing Pipeline ff9ae00d8fcdcc38147b7522638538e7 https://www.encodeproject.org/files/ENCFF791DCG/@@download/ENCFF791DCG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF630KEB bed narrowPeak replicated peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF041GEV, ENCFF180RME, ENCFF834HZT 1000724 ENCODE Processing Pipeline 833082dcd83905389ce878277b38ced4 https://www.encodeproject.org/files/ENCFF630KEB/@@download/ENCFF630KEB.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF187KCH bigBed narrowPeak replicated peaks ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF630KEB 2215278 ENCODE Processing Pipeline f0bf02b532d2e1a0357525f3e984d7f0 https://www.encodeproject.org/files/ENCFF187KCH/@@download/ENCFF187KCH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF487ADZ fastq reads ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2286094720 Bing Ren, UCSD 8e834832c2bd38ee2764778400a65865 SRA:SRR3652062 https://www.encodeproject.org/files/ENCFF487ADZ/@@download/ENCFF487ADZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF976HED fastq reads ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2327550846 Bing Ren, UCSD 5606fa8f3a6f22d1d18c2fbecf96432f SRA:SRR3652061 https://www.encodeproject.org/files/ENCFF976HED/@@download/ENCFF976HED.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF882GPF bam alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF976HED 1238403926 ENCODE Processing Pipeline 00722328b3aad6bea594372f741f66be https://www.encodeproject.org/files/ENCFF882GPF/@@download/ENCFF882GPF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF174VJA bam alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF487ADZ, ENCFF806TVZ 1444151256 ENCODE Processing Pipeline 8799550dcf4fb4dbdc00ca6b3a512e1f https://www.encodeproject.org/files/ENCFF174VJA/@@download/ENCFF174VJA.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF869PGS bigBed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF691OZU 3637249 ENCODE Processing Pipeline 9277e42bc57f73e64c10f3549da31703 https://www.encodeproject.org/files/ENCFF869PGS/@@download/ENCFF869PGS.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF709QIR bed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF882GPF 1993427 ENCODE Processing Pipeline 229f4641912c063159bde17aeaf9949c https://www.encodeproject.org/files/ENCFF709QIR/@@download/ENCFF709QIR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF691OZU bed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF174VJA, ENCFF493BXI 1575053 ENCODE Processing Pipeline 7fc235a0ab44d9cdacdab3ffacab58d3 https://www.encodeproject.org/files/ENCFF691OZU/@@download/ENCFF691OZU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF729VSG bigBed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF709QIR 4381840 ENCODE Processing Pipeline 25c3f58adf7f518838812777fa4ae378 https://www.encodeproject.org/files/ENCFF729VSG/@@download/ENCFF729VSG.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF638ZJP bigWig signal p-value ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF882GPF 544941869 ENCODE Processing Pipeline e3acb36d43b429f5ecf975ee02c89f6a https://www.encodeproject.org/files/ENCFF638ZJP/@@download/ENCFF638ZJP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF306TFC bed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF174VJA, ENCFF330HOT, ENCFF493BXI, ENCFF882GPF 1955165 ENCODE Processing Pipeline 1401c089f01b50808377d3b5168c4845 https://www.encodeproject.org/files/ENCFF306TFC/@@download/ENCFF306TFC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF449FWB bigWig signal p-value ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF174VJA, ENCFF493BXI 572485439 ENCODE Processing Pipeline b8bd410020452c82a7e7e2db224c7523 https://www.encodeproject.org/files/ENCFF449FWB/@@download/ENCFF449FWB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF413TXW bigBed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF306TFC 5453342 ENCODE Processing Pipeline 4ffe627a8f457103117b72b2cf20e884 https://www.encodeproject.org/files/ENCFF413TXW/@@download/ENCFF413TXW.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF559ZCB bigWig signal p-value ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF174VJA, ENCFF330HOT, ENCFF493BXI, ENCFF882GPF 885099921 ENCODE Processing Pipeline 772e2296a47bd5afaedda1072b8e2034 https://www.encodeproject.org/files/ENCFF559ZCB/@@download/ENCFF559ZCB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF105EDK bigWig fold change over control ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF882GPF 464948450 ENCODE Processing Pipeline 34fb5c35ef66fb50a8d97e27bf7d0387 https://www.encodeproject.org/files/ENCFF105EDK/@@download/ENCFF105EDK.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF438FET bigWig fold change over control ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF174VJA, ENCFF493BXI 556826966 ENCODE Processing Pipeline 449de3e3b66a7860dc231a5117288891 https://www.encodeproject.org/files/ENCFF438FET/@@download/ENCFF438FET.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF366RFS bigWig fold change over control ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF174VJA, ENCFF330HOT, ENCFF493BXI, ENCFF882GPF 949808980 ENCODE Processing Pipeline d1d88a51117d0c701ca86f461224d14a https://www.encodeproject.org/files/ENCFF366RFS/@@download/ENCFF366RFS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF229IOG bigBed narrowPeak replicated peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF366YLR 3053091 ENCODE Processing Pipeline a661bc7d92c42faf545d52ac90764cd4 https://www.encodeproject.org/files/ENCFF229IOG/@@download/ENCFF229IOG.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF366YLR bed narrowPeak replicated peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF306TFC, ENCFF691OZU, ENCFF709QIR 1306936 ENCODE Processing Pipeline f08efc2828f102f5fc6a9ec092666195 https://www.encodeproject.org/files/ENCFF366YLR/@@download/ENCFF366YLR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF290ZNF bam unfiltered alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF487ADZ 2613205762 ENCODE Processing Pipeline eac0ac1885ddad9b0d52d9707a7f74aa https://www.encodeproject.org/files/ENCFF290ZNF/@@download/ENCFF290ZNF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF194ORC bam unfiltered alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF976HED 2582080310 ENCODE Processing Pipeline 617e0353b23cd53ebccc0704c0a2e307 https://www.encodeproject.org/files/ENCFF194ORC/@@download/ENCFF194ORC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF178UVY bam alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF487ADZ 1443809891 ENCODE Processing Pipeline df07450b8da4e36fb59eddb2bbd22ee9 https://www.encodeproject.org/files/ENCFF178UVY/@@download/ENCFF178UVY.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF686GYW bam alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF976HED 1238154013 ENCODE Processing Pipeline 0627e0f3a8a976aa5517e33a3bbb5e0e https://www.encodeproject.org/files/ENCFF686GYW/@@download/ENCFF686GYW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF877NZG bed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF686GYW 2065706 ENCODE Processing Pipeline 9f7518f6f237b887908bd3fb3016025f https://www.encodeproject.org/files/ENCFF877NZG/@@download/ENCFF877NZG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF647XDQ bed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF178UVY, ENCFF893IOJ 1655958 ENCODE Processing Pipeline d551a81200e5fa6ae9e58b9b49a609c2 https://www.encodeproject.org/files/ENCFF647XDQ/@@download/ENCFF647XDQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF076TUC bed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF178UVY, ENCFF279URC, ENCFF686GYW, ENCFF893IOJ 2012295 ENCODE Processing Pipeline 1c00dee6ffa46dafa044b26f6d82e053 https://www.encodeproject.org/files/ENCFF076TUC/@@download/ENCFF076TUC.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF604FOZ bigBed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF877NZG 4525107 ENCODE Processing Pipeline e35978c097ea22556a25e29d6d99ff7c https://www.encodeproject.org/files/ENCFF604FOZ/@@download/ENCFF604FOZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF386SGN bigBed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF647XDQ 3796548 ENCODE Processing Pipeline 12aec8b5a73f7a0aa5a5ed101186ffbb https://www.encodeproject.org/files/ENCFF386SGN/@@download/ENCFF386SGN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF361RQM bigBed narrowPeak peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF076TUC 5625178 ENCODE Processing Pipeline 1b9de72f4cb88e80229a09752f465439 https://www.encodeproject.org/files/ENCFF361RQM/@@download/ENCFF361RQM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF006WPV bigWig signal p-value ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF686GYW 573805210 ENCODE Processing Pipeline fdc673b9fb70d1fbe90e657714beb3cc https://www.encodeproject.org/files/ENCFF006WPV/@@download/ENCFF006WPV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF873LIP bigWig signal p-value ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF178UVY, ENCFF893IOJ 663385268 ENCODE Processing Pipeline 6582f8a6d90a79790cf0e8a97500c63b https://www.encodeproject.org/files/ENCFF873LIP/@@download/ENCFF873LIP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF210CVO bigWig signal p-value ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF178UVY, ENCFF279URC, ENCFF686GYW, ENCFF893IOJ 912946682 ENCODE Processing Pipeline a7f83961b7bfaa5c686312e6031c195a https://www.encodeproject.org/files/ENCFF210CVO/@@download/ENCFF210CVO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF015LPR bigWig fold change over control ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF686GYW 518134676 ENCODE Processing Pipeline f61dcae75db9e2846a58dba95990ffbd https://www.encodeproject.org/files/ENCFF015LPR/@@download/ENCFF015LPR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF392YGP bigWig fold change over control ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF178UVY, ENCFF893IOJ 583437354 ENCODE Processing Pipeline 341659dfd48d8c5d90ac688df6d81fc3 https://www.encodeproject.org/files/ENCFF392YGP/@@download/ENCFF392YGP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF306YHS bigWig fold change over control ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF178UVY, ENCFF279URC, ENCFF686GYW, ENCFF893IOJ 1093695476 ENCODE Processing Pipeline f0b4ff8f0eacdc5ac93ed9773047e8a7 https://www.encodeproject.org/files/ENCFF306YHS/@@download/ENCFF306YHS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF247VPI bed narrowPeak replicated peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF076TUC, ENCFF647XDQ, ENCFF877NZG 1352777 ENCODE Processing Pipeline 9b6e38098da10145d6064c04ee708053 https://www.encodeproject.org/files/ENCFF247VPI/@@download/ENCFF247VPI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF803VKI bigBed narrowPeak replicated peaks ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF247VPI 3129413 ENCODE Processing Pipeline 4850cbc49798bd078912b12e08712a76 https://www.encodeproject.org/files/ENCFF803VKI/@@download/ENCFF803VKI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001KTT bigBed broadPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XYX 524278 Bing Ren, UCSD e62185558a24eaa5a44e7e5c157a8b99 https://www.encodeproject.org/files/ENCFF001KTT/@@download/ENCFF001KTT.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KTU bam alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KUC 1007254629 Bing Ren, UCSD 918f52427226ca50c2bf91b919f8f920 https://www.encodeproject.org/files/ENCFF001KTU/@@download/ENCFF001KTU.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KTV bigWig signal ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KTU, ENCFF001KTW 78778176 Bing Ren, UCSD 3fcae2a874b844fe051b8b89d1220fd7 https://www.encodeproject.org/files/ENCFF001KTV/@@download/ENCFF001KTV.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KTW bam alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KUF 1384609324 Bing Ren, UCSD 6a1773a773d3fad391b2ce1a5f3c457e https://www.encodeproject.org/files/ENCFF001KTW/@@download/ENCFF001KTW.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KUC fastq reads ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1002830282 Bing Ren, UCSD 56bc16bf2f33b7b44cff967ed7a7db74 https://www.encodeproject.org/files/ENCFF001KUC/@@download/ENCFF001KUC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUJ/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KUF fastq reads ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1376955102 Bing Ren, UCSD c66ea84e7e5d991183e0cedc6005a03a https://www.encodeproject.org/files/ENCFF001KUF/@@download/ENCFF001KUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XYX bed broadPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KTU, ENCFF001KTW 245366 Bing Ren, UCSD ed5b6e688759f15d6ac652854594615c https://www.encodeproject.org/files/ENCFF001XYX/@@download/ENCFF001XYX.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF391YMM bam unfiltered alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KUF, ENCFF018NEO 1497160203 ENCODE Processing Pipeline 0716d01b578fe4f9565e626e7e8bec0d https://www.encodeproject.org/files/ENCFF391YMM/@@download/ENCFF391YMM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF977NYR bam unfiltered alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KUC, ENCFF018NEO 1089840647 ENCODE Processing Pipeline a97c4837a446df95495292d164a637bf https://www.encodeproject.org/files/ENCFF977NYR/@@download/ENCFF977NYR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF155VOG bam alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KUC, ENCFF018NEO 522076024 ENCODE Processing Pipeline 4e0724fecc2ddd4ec035cace01361e79 https://www.encodeproject.org/files/ENCFF155VOG/@@download/ENCFF155VOG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF093VOK bam alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KUF, ENCFF018NEO 705681615 ENCODE Processing Pipeline f9b07408d5c25dbc85a927997428596c https://www.encodeproject.org/files/ENCFF093VOK/@@download/ENCFF093VOK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF126QEE bed narrowPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF093VOK, ENCFF155VOG, ENCFF242QZL, ENCFF769FTV 1284918 ENCODE Processing Pipeline ac1f0c6240513e04aae0891699573c9a https://www.encodeproject.org/files/ENCFF126QEE/@@download/ENCFF126QEE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF819DTY bed narrowPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF093VOK, ENCFF242QZL 1630249 ENCODE Processing Pipeline a19b9f88c0f352d6027399bc62733a63 https://www.encodeproject.org/files/ENCFF819DTY/@@download/ENCFF819DTY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF298QIW bigBed narrowPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF294EFP 3085996 ENCODE Processing Pipeline 753da9c00a82d125e47ecea74b9c8066 https://www.encodeproject.org/files/ENCFF298QIW/@@download/ENCFF298QIW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF294EFP bed narrowPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF155VOG, ENCFF769FTV 1452563 ENCODE Processing Pipeline 6669fffb47aeb9560e8f98ff1c699c22 https://www.encodeproject.org/files/ENCFF294EFP/@@download/ENCFF294EFP.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF228URP bigBed narrowPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF126QEE 3176924 ENCODE Processing Pipeline fb5d8020ff3b460c74e1da28fd7621f7 https://www.encodeproject.org/files/ENCFF228URP/@@download/ENCFF228URP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF609MVW bigBed narrowPeak peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF819DTY 3526475 ENCODE Processing Pipeline 8662afa9dc501770ede2b6bdd53d115c https://www.encodeproject.org/files/ENCFF609MVW/@@download/ENCFF609MVW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF743MVW bigWig signal p-value ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF093VOK, ENCFF242QZL 312863468 ENCODE Processing Pipeline 9dbdf81b2eaafedfdfb39859127cd638 https://www.encodeproject.org/files/ENCFF743MVW/@@download/ENCFF743MVW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF467KSO bigWig signal p-value ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF155VOG, ENCFF769FTV 310521501 ENCODE Processing Pipeline 52562880aeb516f37c09f11002678db7 https://www.encodeproject.org/files/ENCFF467KSO/@@download/ENCFF467KSO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF385MCV bigWig signal p-value ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF093VOK, ENCFF155VOG, ENCFF242QZL, ENCFF769FTV 636268973 ENCODE Processing Pipeline 74905bf4002efaf7e72d473a1f3b24c2 https://www.encodeproject.org/files/ENCFF385MCV/@@download/ENCFF385MCV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF405LTU bigWig fold change over control ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF155VOG, ENCFF769FTV 222408857 ENCODE Processing Pipeline 4fa8df346a43d76cc1dc9438f9142709 https://www.encodeproject.org/files/ENCFF405LTU/@@download/ENCFF405LTU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF359GCG bigWig fold change over control ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF093VOK, ENCFF242QZL 284544406 ENCODE Processing Pipeline 726d18c073bd7f4bd9d533d2e0c7a2c1 https://www.encodeproject.org/files/ENCFF359GCG/@@download/ENCFF359GCG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF906CRU bigWig fold change over control ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF093VOK, ENCFF155VOG, ENCFF242QZL, ENCFF769FTV 560758601 ENCODE Processing Pipeline 6a5db9366c0a2863a00849d816f9a532 https://www.encodeproject.org/files/ENCFF906CRU/@@download/ENCFF906CRU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF265EJV bed narrowPeak replicated peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF126QEE, ENCFF294EFP, ENCFF819DTY 534095 ENCODE Processing Pipeline d55c7fed6b9bbdf62bb0325fdb29f07c https://www.encodeproject.org/files/ENCFF265EJV/@@download/ENCFF265EJV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF471JZY bigBed narrowPeak replicated peaks ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF265EJV 1317542 ENCODE Processing Pipeline c19416c95696b0ccd20a20e9e20dde72 https://www.encodeproject.org/files/ENCFF471JZY/@@download/ENCFF471JZY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF002APF fastq reads ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1476276632 Bing Ren, UCSD afcaf3d397735d607d3aced3a5fdb1c2 SRA:SRR3651945 https://www.encodeproject.org/files/ENCFF002APF/@@download/ENCFF002APF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARC/ released mild to moderate bottlenecking, low read depth ENCFF002API fastq reads ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1937478787 Bing Ren, UCSD 0f99a4a531a9e48252f853212f77acc8 SRA:SRR3651944 https://www.encodeproject.org/files/ENCFF002API/@@download/ENCFF002API.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARH/ released mild to moderate bottlenecking, low read depth ENCFF449LKY bam alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APF, ENCFF806TVZ 1063914891 ENCODE Processing Pipeline 7f5776879db7f49aa7d7dd8e7c4517f8 https://www.encodeproject.org/files/ENCFF449LKY/@@download/ENCFF449LKY.bam mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF187MJE bam alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002API, ENCFF806TVZ 1361869291 ENCODE Processing Pipeline 6d047cc4ee9502f82f001379509007fa https://www.encodeproject.org/files/ENCFF187MJE/@@download/ENCFF187MJE.bam mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF854JBG bed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF449LKY, ENCFF989KGL 667223 ENCODE Processing Pipeline 74d816dd63c17688754b147b1c447fc4 https://www.encodeproject.org/files/ENCFF854JBG/@@download/ENCFF854JBG.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF678RFZ bed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF187MJE, ENCFF449LKY, ENCFF989KGL 705653 ENCODE Processing Pipeline e3b765b749c2c158482723340b16ff40 https://www.encodeproject.org/files/ENCFF678RFZ/@@download/ENCFF678RFZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF272NCX bigBed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF854JBG 1739426 ENCODE Processing Pipeline 6d3f85d9fffde56bf3f178aed6324f6e https://www.encodeproject.org/files/ENCFF272NCX/@@download/ENCFF272NCX.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF499FNJ bed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF187MJE, ENCFF989KGL 682336 ENCODE Processing Pipeline cfcce6419eeccd9e5ccb90556d10cb95 https://www.encodeproject.org/files/ENCFF499FNJ/@@download/ENCFF499FNJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF965ENZ bigBed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF499FNJ 1791081 ENCODE Processing Pipeline 67693002c24ca289a85b99791524c123 https://www.encodeproject.org/files/ENCFF965ENZ/@@download/ENCFF965ENZ.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF434SIO bigBed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF678RFZ 1794477 ENCODE Processing Pipeline cb262d203281835be453896b31604cec https://www.encodeproject.org/files/ENCFF434SIO/@@download/ENCFF434SIO.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF881WUN bigWig signal p-value ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF449LKY, ENCFF989KGL 417819156 ENCODE Processing Pipeline de558061495718e7ec779aaa53ebdf4f https://www.encodeproject.org/files/ENCFF881WUN/@@download/ENCFF881WUN.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF511GPA bigWig signal p-value ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF187MJE, ENCFF989KGL 552224574 ENCODE Processing Pipeline fbce7d4ab13eafd452569df37a619dd1 https://www.encodeproject.org/files/ENCFF511GPA/@@download/ENCFF511GPA.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF195XTT bigWig signal p-value ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF187MJE, ENCFF449LKY, ENCFF989KGL 597760888 ENCODE Processing Pipeline 12289fa956fbe543a0dc9f70a7ff6c73 https://www.encodeproject.org/files/ENCFF195XTT/@@download/ENCFF195XTT.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF835YHG bigWig fold change over control ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF449LKY, ENCFF989KGL 444950064 ENCODE Processing Pipeline f43dd82d44273fc1b0f3b0dd3b3a1c01 https://www.encodeproject.org/files/ENCFF835YHG/@@download/ENCFF835YHG.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF328OIC bigWig fold change over control ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF187MJE, ENCFF989KGL 578411125 ENCODE Processing Pipeline 261606f46b0910bc587aa0d76d751243 https://www.encodeproject.org/files/ENCFF328OIC/@@download/ENCFF328OIC.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF535YRS bigWig fold change over control ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF187MJE, ENCFF449LKY, ENCFF989KGL 815627654 ENCODE Processing Pipeline f77efdcaaa66d4f1bae91e2b77908e72 https://www.encodeproject.org/files/ENCFF535YRS/@@download/ENCFF535YRS.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF115NQF bigBed narrowPeak replicated peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF723PPQ 1223231 ENCODE Processing Pipeline a3fa3313305243e89be4e98e6afb8dfa https://www.encodeproject.org/files/ENCFF115NQF/@@download/ENCFF115NQF.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF723PPQ bed narrowPeak replicated peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF499FNJ, ENCFF678RFZ, ENCFF854JBG 435822 ENCODE Processing Pipeline cd75ef823a757878ed785d496576f8d8 https://www.encodeproject.org/files/ENCFF723PPQ/@@download/ENCFF723PPQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF453ZRR bam unfiltered alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002APF, ENCFF018NEO 1585674014 ENCODE Processing Pipeline e2269446562066b8aecc2ba309e66dc3 https://www.encodeproject.org/files/ENCFF453ZRR/@@download/ENCFF453ZRR.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF440OVB bam unfiltered alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002API, ENCFF018NEO 2067546251 ENCODE Processing Pipeline 568f3cc5000515b50cea762d42d9cb7f https://www.encodeproject.org/files/ENCFF440OVB/@@download/ENCFF440OVB.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF647QBV bam alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002APF, ENCFF018NEO 1063655190 ENCODE Processing Pipeline f457cd7742dfdfed75a52269b4d07e30 https://www.encodeproject.org/files/ENCFF647QBV/@@download/ENCFF647QBV.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF167HPH bam alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002API, ENCFF018NEO 1361533537 ENCODE Processing Pipeline ebcc1700af263cfb46a68b1f0d66897d https://www.encodeproject.org/files/ENCFF167HPH/@@download/ENCFF167HPH.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF311QBB bed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF040DTM, ENCFF517DFW, ENCFF647QBV 667164 ENCODE Processing Pipeline b291f10f81786d1f1436282e5ee9608d https://www.encodeproject.org/files/ENCFF311QBB/@@download/ENCFF311QBB.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF817PHC bed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF040DTM, ENCFF167HPH, ENCFF517DFW 670636 ENCODE Processing Pipeline 287f2bb294e0d4734fde3ae957bf0b3a https://www.encodeproject.org/files/ENCFF817PHC/@@download/ENCFF817PHC.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF040KKS bed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040DTM, ENCFF167HPH, ENCFF517DFW, ENCFF647QBV 725457 ENCODE Processing Pipeline 7e4b6b76fd5aa085bf62390258da1be3 https://www.encodeproject.org/files/ENCFF040KKS/@@download/ENCFF040KKS.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF374ZGW bigBed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF311QBB 1741496 ENCODE Processing Pipeline 264bdbcee893737af62e08f84fc96b79 https://www.encodeproject.org/files/ENCFF374ZGW/@@download/ENCFF374ZGW.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF980UMC bigBed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF817PHC 1763195 ENCODE Processing Pipeline 5cac2c33f7e701c2f0f0dfa66cd8d387 https://www.encodeproject.org/files/ENCFF980UMC/@@download/ENCFF980UMC.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF834UVS bigBed narrowPeak peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040KKS 1821514 ENCODE Processing Pipeline f2e542bf160414ecd6ae46e830e1b88f https://www.encodeproject.org/files/ENCFF834UVS/@@download/ENCFF834UVS.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF342LYF bigWig signal p-value ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF040DTM, ENCFF517DFW, ENCFF647QBV 472478447 ENCODE Processing Pipeline 1cc3b02c3da17e3fb63f2e45d5dfc1a8 https://www.encodeproject.org/files/ENCFF342LYF/@@download/ENCFF342LYF.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF485OWW bigWig signal p-value ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF040DTM, ENCFF167HPH, ENCFF517DFW 584120629 ENCODE Processing Pipeline a55d6a88017dbccb0dffdf6259182f97 https://www.encodeproject.org/files/ENCFF485OWW/@@download/ENCFF485OWW.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF035OKR bigWig signal p-value ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040DTM, ENCFF167HPH, ENCFF517DFW, ENCFF647QBV 748795338 ENCODE Processing Pipeline 62422984bbeb42cfad6a7b294f69b01a https://www.encodeproject.org/files/ENCFF035OKR/@@download/ENCFF035OKR.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF388UAV bigWig fold change over control ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF040DTM, ENCFF517DFW, ENCFF647QBV 442350907 ENCODE Processing Pipeline b3664ac36bed93be801ed7477a752327 https://www.encodeproject.org/files/ENCFF388UAV/@@download/ENCFF388UAV.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF183PNU bigWig fold change over control ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF040DTM, ENCFF167HPH, ENCFF517DFW 568961939 ENCODE Processing Pipeline fe5aff0a8ca39b078ae54f3fe9ec2c31 https://www.encodeproject.org/files/ENCFF183PNU/@@download/ENCFF183PNU.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF820UTZ bigWig fold change over control ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040DTM, ENCFF167HPH, ENCFF517DFW, ENCFF647QBV 751056722 ENCODE Processing Pipeline 233e825582cd9b912c3efaefb8a3e56b https://www.encodeproject.org/files/ENCFF820UTZ/@@download/ENCFF820UTZ.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF877VGN bed narrowPeak replicated peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040KKS, ENCFF311QBB, ENCFF817PHC 430295 ENCODE Processing Pipeline ac4bcb7763295cc92b03589a2c1abcb8 https://www.encodeproject.org/files/ENCFF877VGN/@@download/ENCFF877VGN.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF800FRZ bigBed narrowPeak replicated peaks ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF877VGN 1222633 ENCODE Processing Pipeline 7b6ab4c728b1ebf0d3aac9f5d3e87268 https://www.encodeproject.org/files/ENCFF800FRZ/@@download/ENCFF800FRZ.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF001MUQ bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MUT 1343896178 Ross Hardison, PennState 1f597fa1055753484263dc9fff39fce4 https://www.encodeproject.org/files/ENCFF001MUQ/@@download/ENCFF001MUQ.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MUR bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MUW 7507625198 Ross Hardison, PennState 164e2dac031e12d0a4134e8048789385 https://www.encodeproject.org/files/ENCFF001MUR/@@download/ENCFF001MUR.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MUS bigWig signal ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1951475277 Ross Hardison, PennState 782b3673b4f75b9597a64e4ff899a92f https://www.encodeproject.org/files/ENCFF001MUS/@@download/ENCFF001MUS.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MUT fastq reads ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1044749420 Ross Hardison, PennState 86a25a8980dfafd542c3bdd241c3d30a https://www.encodeproject.org/files/ENCFF001MUT/@@download/ENCFF001MUT.fastq.gz Illumina Genome Analyzer IIx released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MUU bigWig signal ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5921511774 Ross Hardison, PennState 3160224d283ca3efbd13a8c72b92c497 https://www.encodeproject.org/files/ENCFF001MUU/@@download/ENCFF001MUU.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MUV bigWig signal ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 6011085147 Ross Hardison, PennState 74a96128dbf01ef416d1ae4ce193ea13 https://www.encodeproject.org/files/ENCFF001MUV/@@download/ENCFF001MUV.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MUW fastq reads ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 6364398062 Ross Hardison, PennState 52b4587919fc6c58420410528f462f00 https://www.encodeproject.org/files/ENCFF001MUW/@@download/ENCFF001MUW.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF726TRO bam unfiltered alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MUW, ENCFF806TVZ 7741874545 J. Michael Cherry, Stanford 076fc416a32933bf7fdbe6924e33580d https://www.encodeproject.org/files/ENCFF726TRO/@@download/ENCFF726TRO.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF331GZT bam unfiltered alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MUT, ENCFF806TVZ 1420103424 J. Michael Cherry, Stanford 63521450d1136d5ac4ae7abffd825b16 https://www.encodeproject.org/files/ENCFF331GZT/@@download/ENCFF331GZT.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF887RWQ bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUT, ENCFF018NEO 1028334062 ENCODE Processing Pipeline e1ac4ce1442f633183f56e13ef0baf15 https://www.encodeproject.org/files/ENCFF887RWQ/@@download/ENCFF887RWQ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF163HZJ bam unfiltered alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUT, ENCFF018NEO 1421571629 ENCODE Processing Pipeline 63cd6bbfa05f43fcf6bb24be9d2c606b https://www.encodeproject.org/files/ENCFF163HZJ/@@download/ENCFF163HZJ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF784QCS bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MUW, ENCFF806TVZ 5572539568 ENCODE Processing Pipeline c4fffbb5dd9966587fa45a3f8129ce9d https://www.encodeproject.org/files/ENCFF784QCS/@@download/ENCFF784QCS.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF768PST bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MUT, ENCFF806TVZ 1028638616 ENCODE Processing Pipeline db10b23dddfbc60dcc8b76da5f1b6b23 https://www.encodeproject.org/files/ENCFF768PST/@@download/ENCFF768PST.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF769SND bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUW, ENCFF018NEO 4802892124 ENCODE Processing Pipeline 7fccbdaf3005803a405ec2967dcfd497 https://www.encodeproject.org/files/ENCFF769SND/@@download/ENCFF769SND.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF788FHZ bam unfiltered alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUW, ENCFF018NEO 6708042987 ENCODE Processing Pipeline 18914fa9a4e28ac0becdf7c23ce8966e https://www.encodeproject.org/files/ENCFF788FHZ/@@download/ENCFF788FHZ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF164OMU fastq reads ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 2052303125 Bing Ren, UCSD 1e3fc8be8e53fc6a0c98485b7963e82a SRA:SRR3651381 https://www.encodeproject.org/files/ENCFF164OMU/@@download/ENCFF164OMU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXX/ released low read length control insufficient read depth ENCFF707NNE fastq reads ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1685641266 Bing Ren, UCSD cbd2be2597b121d07d2e61c7c5342a36 SRA:SRR3651382 https://www.encodeproject.org/files/ENCFF707NNE/@@download/ENCFF707NNE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXZ/ released low read length control insufficient read depth ENCFF702GBQ bam alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF164OMU, ENCFF806TVZ 1191415499 ENCODE Processing Pipeline 5cfa5c163b0f44656150d41dfc7c5369 https://www.encodeproject.org/files/ENCFF702GBQ/@@download/ENCFF702GBQ.bam mm10-minimal archived low read length control insufficient read depth ENCFF712OOH bam alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF707NNE, ENCFF806TVZ 995246100 ENCODE Processing Pipeline 06aff7f6177968f40aec668ba97ff551 https://www.encodeproject.org/files/ENCFF712OOH/@@download/ENCFF712OOH.bam mm10-minimal archived low read length control insufficient read depth ENCFF985MEA bed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF712OOH 672322 ENCODE Processing Pipeline 9df6479e2d70265cbf41dac1a7d7cd99 https://www.encodeproject.org/files/ENCFF985MEA/@@download/ENCFF985MEA.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF357LVN bed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF702GBQ 402101 ENCODE Processing Pipeline 444c4830b9303c463fef4f7b03f51539 https://www.encodeproject.org/files/ENCFF357LVN/@@download/ENCFF357LVN.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF305FCX bed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF702GBQ, ENCFF712OOH 138749 ENCODE Processing Pipeline 9af9768b2f9527aa94ca3ef2cf40c3ba https://www.encodeproject.org/files/ENCFF305FCX/@@download/ENCFF305FCX.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF656NZD bigBed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF357LVN 836298 ENCODE Processing Pipeline d22dc3db4b96ad14470ff9c6a462677d https://www.encodeproject.org/files/ENCFF656NZD/@@download/ENCFF656NZD.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF729MFR bigBed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF985MEA 1251729 ENCODE Processing Pipeline 4061162a8bc1975d5ff98e4e06f31738 https://www.encodeproject.org/files/ENCFF729MFR/@@download/ENCFF729MFR.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF996KRR bigBed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF305FCX 361221 ENCODE Processing Pipeline c0a0343429f2e3be98e25bbadbb8fec7 https://www.encodeproject.org/files/ENCFF996KRR/@@download/ENCFF996KRR.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF097TBI bigWig signal p-value ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF702GBQ 503543224 ENCODE Processing Pipeline 2e3c02d3e308ae62859b7c80c547d9de https://www.encodeproject.org/files/ENCFF097TBI/@@download/ENCFF097TBI.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF495LTB bigWig signal p-value ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF712OOH 367758252 ENCODE Processing Pipeline f2a2c1f7f3987f65ff3f36a39894fbc8 https://www.encodeproject.org/files/ENCFF495LTB/@@download/ENCFF495LTB.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF905EYN bigWig signal p-value ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF702GBQ, ENCFF712OOH 492120255 ENCODE Processing Pipeline ee9bd2a2c1df7fb91c3109519e0ed26c https://www.encodeproject.org/files/ENCFF905EYN/@@download/ENCFF905EYN.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF725GJF bigWig fold change over control ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF702GBQ 505936337 ENCODE Processing Pipeline 6c946056a466f038affdab8f5bb6e004 https://www.encodeproject.org/files/ENCFF725GJF/@@download/ENCFF725GJF.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF143BMX bigWig fold change over control ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF712OOH 463434225 ENCODE Processing Pipeline 3c8ce9b259b73784731b2fd906896e65 https://www.encodeproject.org/files/ENCFF143BMX/@@download/ENCFF143BMX.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF773PYW bigWig fold change over control ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF702GBQ, ENCFF712OOH 771391873 ENCODE Processing Pipeline eb3dc61987d46b9df0e879e8e2088002 https://www.encodeproject.org/files/ENCFF773PYW/@@download/ENCFF773PYW.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF509HFD bed narrowPeak replicated peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF305FCX, ENCFF357LVN, ENCFF985MEA 92027 ENCODE Processing Pipeline 0aa22b6e6ddbd2b5bf227100c3296646 https://www.encodeproject.org/files/ENCFF509HFD/@@download/ENCFF509HFD.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF370ZLX bigBed narrowPeak replicated peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF509HFD 253673 ENCODE Processing Pipeline 66b0c90ba298d1b6249929e210db0a31 https://www.encodeproject.org/files/ENCFF370ZLX/@@download/ENCFF370ZLX.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF792NWF bam unfiltered alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF707NNE 2147482013 ENCODE Processing Pipeline 6e0295dfbb502db26179350a3685f2b8 https://www.encodeproject.org/files/ENCFF792NWF/@@download/ENCFF792NWF.bam mm10 released low read length control insufficient read depth ENCFF470SWT bam unfiltered alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF164OMU 2603014733 ENCODE Processing Pipeline efb2473bc897e0390b27afa9a411474e https://www.encodeproject.org/files/ENCFF470SWT/@@download/ENCFF470SWT.bam mm10 released low read length control insufficient read depth ENCFF477YGA bam alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF707NNE 994844992 ENCODE Processing Pipeline 2cc008f513f16d28c0aeaedbabb174fa https://www.encodeproject.org/files/ENCFF477YGA/@@download/ENCFF477YGA.bam mm10 released low read length control insufficient read depth ENCFF964HOB bam alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF164OMU 1190966161 ENCODE Processing Pipeline 55061fd4ed04d2e7f4d25db78eddae6c https://www.encodeproject.org/files/ENCFF964HOB/@@download/ENCFF964HOB.bam mm10 released low read length control insufficient read depth ENCFF720SRE bed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF964HOB 416662 ENCODE Processing Pipeline cae1afa423fec98903851b914a0fed71 https://www.encodeproject.org/files/ENCFF720SRE/@@download/ENCFF720SRE.bed.gz mm10 released low read length control insufficient read depth ENCFF788UYH bigBed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF529LJT 1284444 ENCODE Processing Pipeline ad0608618d8fa58ccbf6fe977b175063 https://www.encodeproject.org/files/ENCFF788UYH/@@download/ENCFF788UYH.bigBed mm10 released low read length control insufficient read depth ENCFF087EAJ bed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF477YGA, ENCFF964HOB 92541 ENCODE Processing Pipeline 902e888f3087f5f1184184559a3ebf56 https://www.encodeproject.org/files/ENCFF087EAJ/@@download/ENCFF087EAJ.bed.gz mm10 released low read length control insufficient read depth ENCFF529LJT bed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF477YGA 697995 ENCODE Processing Pipeline 77ad87882086f3f949669a184b42c4ff https://www.encodeproject.org/files/ENCFF529LJT/@@download/ENCFF529LJT.bed.gz mm10 released low read length control insufficient read depth ENCFF276PGT bigBed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF720SRE 857160 ENCODE Processing Pipeline aec1e53cb71fea3478f1084b3d4f5223 https://www.encodeproject.org/files/ENCFF276PGT/@@download/ENCFF276PGT.bigBed mm10 released low read length control insufficient read depth ENCFF745OIK bigBed narrowPeak peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF087EAJ 266683 ENCODE Processing Pipeline 974e27e60ad2fcabddca4653d772fc14 https://www.encodeproject.org/files/ENCFF745OIK/@@download/ENCFF745OIK.bigBed mm10 released low read length control insufficient read depth ENCFF952AYL bigWig signal p-value ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF964HOB 506802181 ENCODE Processing Pipeline 5173a2879cab3dd540f4fcee45f66f6d https://www.encodeproject.org/files/ENCFF952AYL/@@download/ENCFF952AYL.bigWig mm10 released low read length control insufficient read depth ENCFF216KEE bigWig signal p-value ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF477YGA 470228823 ENCODE Processing Pipeline 85556df41368fec92b9b41f809532d6b https://www.encodeproject.org/files/ENCFF216KEE/@@download/ENCFF216KEE.bigWig mm10 released low read length control insufficient read depth ENCFF692CRT bigWig signal p-value ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF477YGA, ENCFF964HOB 502094109 ENCODE Processing Pipeline a4daac54333d0cc68de5c7b26737b4e7 https://www.encodeproject.org/files/ENCFF692CRT/@@download/ENCFF692CRT.bigWig mm10 released low read length control insufficient read depth ENCFF355UCK bigWig fold change over control ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF964HOB 509660219 ENCODE Processing Pipeline 8df8a53c95ab37879c17cabc546efc7e https://www.encodeproject.org/files/ENCFF355UCK/@@download/ENCFF355UCK.bigWig mm10 released low read length control insufficient read depth ENCFF027LSV bigWig fold change over control ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF477YGA 461618003 ENCODE Processing Pipeline 1348626d57820ed8714249807cd283be https://www.encodeproject.org/files/ENCFF027LSV/@@download/ENCFF027LSV.bigWig mm10 released low read length control insufficient read depth ENCFF947IGN bigWig fold change over control ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF477YGA, ENCFF964HOB 784127093 ENCODE Processing Pipeline fd130a6d0f1237df13622aeb41b86495 https://www.encodeproject.org/files/ENCFF947IGN/@@download/ENCFF947IGN.bigWig mm10 released low read length control insufficient read depth ENCFF968FFE bed narrowPeak replicated peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF087EAJ, ENCFF529LJT, ENCFF720SRE 74539 ENCODE Processing Pipeline 810986ba1384fde50a8e9a876313e410 https://www.encodeproject.org/files/ENCFF968FFE/@@download/ENCFF968FFE.bed.gz mm10 released low read length control insufficient read depth ENCFF469PWM bigBed narrowPeak replicated peaks ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF968FFE 262062 ENCODE Processing Pipeline c06b6598449d95f6cc5a072333c3269d https://www.encodeproject.org/files/ENCFF469PWM/@@download/ENCFF469PWM.bigBed mm10 released low read length control insufficient read depth ENCFF753BDG bam alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF656XPO, ENCFF806TVZ, ENCFF981HPJ 1272455142 ENCODE Processing Pipeline 99ee28fc555ce57d56fa79a274c036f2 https://www.encodeproject.org/files/ENCFF753BDG/@@download/ENCFF753BDG.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF981HPJ fastq reads ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 604891883 Bing Ren, UCSD f2ce8d2b7dd4af82b5017a24570c93a6 SRA:SRR3653224 https://www.encodeproject.org/files/ENCFF981HPJ/@@download/ENCFF981HPJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF246LOG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF656XPO fastq reads ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 1954247777 Bing Ren, UCSD ffec4e0168a745a449985f8d935ecb55 SRA:SRR3653225 https://www.encodeproject.org/files/ENCFF656XPO/@@download/ENCFF656XPO.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF052QGO fastq reads ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2243970923 Bing Ren, UCSD 79ec2f85dbd29be1ef09933938cdb447 SRA:SRR3653226 https://www.encodeproject.org/files/ENCFF052QGO/@@download/ENCFF052QGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF101TZV bam alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF052QGO, ENCFF806TVZ 1654682413 ENCODE Processing Pipeline 1c7a9431a394d606175daa62820b2d5a https://www.encodeproject.org/files/ENCFF101TZV/@@download/ENCFF101TZV.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF971FYL bed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF753BDG 1636233 ENCODE Processing Pipeline a82cf5dea0e8f445e2b353cd8b2e052d https://www.encodeproject.org/files/ENCFF971FYL/@@download/ENCFF971FYL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF146WBN bed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF101TZV, ENCFF170XAR, ENCFF269MZC, ENCFF753BDG 1782097 ENCODE Processing Pipeline 35aa2ec43a7a1c8c1eb7ae02569323b6 https://www.encodeproject.org/files/ENCFF146WBN/@@download/ENCFF146WBN.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF364AZV bed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101TZV, ENCFF269MZC 862386 ENCODE Processing Pipeline e5c5f63c1d659f0f184bdcf49c30b9b0 https://www.encodeproject.org/files/ENCFF364AZV/@@download/ENCFF364AZV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF222RZJ bigBed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF971FYL 3644883 ENCODE Processing Pipeline e29d8e42297a3b6aad455daa0cb01419 https://www.encodeproject.org/files/ENCFF222RZJ/@@download/ENCFF222RZJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF388IVT bigBed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF146WBN 3962537 ENCODE Processing Pipeline 4ba99cfab8003dce475cbbe341e58b24 https://www.encodeproject.org/files/ENCFF388IVT/@@download/ENCFF388IVT.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF704IVD bigBed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF364AZV 2180692 ENCODE Processing Pipeline 4bd14a06f3e349a6caf52c5fc80dd1b3 https://www.encodeproject.org/files/ENCFF704IVD/@@download/ENCFF704IVD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF290EXZ bigWig signal p-value ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF753BDG 449235307 ENCODE Processing Pipeline a581fbb439b9b62a299ca1434d5d7cce https://www.encodeproject.org/files/ENCFF290EXZ/@@download/ENCFF290EXZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF180FOB bigWig signal p-value ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101TZV, ENCFF269MZC 558722496 ENCODE Processing Pipeline 1551d0adf6805eff9195bd4df580cb64 https://www.encodeproject.org/files/ENCFF180FOB/@@download/ENCFF180FOB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF191NTW bigWig signal p-value ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF101TZV, ENCFF170XAR, ENCFF269MZC, ENCFF753BDG 1044825683 ENCODE Processing Pipeline 8fb9739c050162ef1abffd5ce9a27423 https://www.encodeproject.org/files/ENCFF191NTW/@@download/ENCFF191NTW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF612FOO bigWig fold change over control ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF753BDG 457496774 ENCODE Processing Pipeline 6f939d3d587d8ce5626e4289af6cb00c https://www.encodeproject.org/files/ENCFF612FOO/@@download/ENCFF612FOO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF495JOS bigWig fold change over control ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101TZV, ENCFF269MZC 575736407 ENCODE Processing Pipeline 251200026a7cff7735a207b1b1f28224 https://www.encodeproject.org/files/ENCFF495JOS/@@download/ENCFF495JOS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF920HZF bigWig fold change over control ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF101TZV, ENCFF170XAR, ENCFF269MZC, ENCFF753BDG 1010785548 ENCODE Processing Pipeline 24e46264442fa9a34282428bd0c21b53 https://www.encodeproject.org/files/ENCFF920HZF/@@download/ENCFF920HZF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF074EWA bed narrowPeak replicated peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF146WBN, ENCFF364AZV, ENCFF971FYL 977677 ENCODE Processing Pipeline eb4e49b84282d6dfff96103348ffcbb3 https://www.encodeproject.org/files/ENCFF074EWA/@@download/ENCFF074EWA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF200FBX bigBed narrowPeak replicated peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF074EWA 1905395 ENCODE Processing Pipeline 4423272ddfb152cafbf63476688f1af1 https://www.encodeproject.org/files/ENCFF200FBX/@@download/ENCFF200FBX.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF525QSA bam unfiltered alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF656XPO, ENCFF981HPJ 2829685505 ENCODE Processing Pipeline 0b8f72c341ba5cd87fdebaa8343aec35 https://www.encodeproject.org/files/ENCFF525QSA/@@download/ENCFF525QSA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF381PCC bam unfiltered alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF052QGO 2658364952 ENCODE Processing Pipeline 4f52c6ec1599c7e64a69a5f0a96e1f65 https://www.encodeproject.org/files/ENCFF381PCC/@@download/ENCFF381PCC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF961NOC bam alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF052QGO 1654273842 ENCODE Processing Pipeline 778a4994c75a729a1b1bdb46fa001a10 https://www.encodeproject.org/files/ENCFF961NOC/@@download/ENCFF961NOC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF768UWF bam alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF656XPO, ENCFF981HPJ 1272193377 ENCODE Processing Pipeline 8b5bca6fef96ffc9b293a9515b23fafa https://www.encodeproject.org/files/ENCFF768UWF/@@download/ENCFF768UWF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF626DRD bed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF768UWF, ENCFF876QJH 1662863 ENCODE Processing Pipeline 4ae77714a07863578b56599e165afc55 https://www.encodeproject.org/files/ENCFF626DRD/@@download/ENCFF626DRD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF567HLN bigBed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF131PPG 2235191 ENCODE Processing Pipeline 120c297e24f58774e7237441c2f37cdb https://www.encodeproject.org/files/ENCFF567HLN/@@download/ENCFF567HLN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF131PPG bed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF961NOC 884134 ENCODE Processing Pipeline 21e5b3846dd49e2677a2f45337ddb87e https://www.encodeproject.org/files/ENCFF131PPG/@@download/ENCFF131PPG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF240LUQ bed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF200JPL, ENCFF768UWF, ENCFF876QJH, ENCFF961NOC 1804934 ENCODE Processing Pipeline 30223673335b4ce10aea041f3e0a24a1 https://www.encodeproject.org/files/ENCFF240LUQ/@@download/ENCFF240LUQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF113LOO bigBed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF626DRD 3715515 ENCODE Processing Pipeline 6a9fb1bbb42b1d107532eed7240bf4c8 https://www.encodeproject.org/files/ENCFF113LOO/@@download/ENCFF113LOO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF870WLC bigBed narrowPeak peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF240LUQ 3995148 ENCODE Processing Pipeline c5abb8c9e5ff70cdd142b1af9ce240fb https://www.encodeproject.org/files/ENCFF870WLC/@@download/ENCFF870WLC.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF868FWH bigWig signal p-value ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF768UWF, ENCFF876QJH 504766058 ENCODE Processing Pipeline 32031daf670027d5915413db6aa51d96 https://www.encodeproject.org/files/ENCFF868FWH/@@download/ENCFF868FWH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF630THX bigWig signal p-value ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF961NOC 625230118 ENCODE Processing Pipeline 87067978a5a8144fe8361afac23aee2e https://www.encodeproject.org/files/ENCFF630THX/@@download/ENCFF630THX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF807FFS bigWig signal p-value ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF200JPL, ENCFF768UWF, ENCFF876QJH, ENCFF961NOC 774552261 ENCODE Processing Pipeline 83840fe86afcf899fb48e7f0674184c3 https://www.encodeproject.org/files/ENCFF807FFS/@@download/ENCFF807FFS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF133XYJ bigWig fold change over control ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF768UWF, ENCFF876QJH 499129652 ENCODE Processing Pipeline c04b44a35d6fd784b934f4546f2305c4 https://www.encodeproject.org/files/ENCFF133XYJ/@@download/ENCFF133XYJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF947IMP bigWig fold change over control ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF961NOC 621850706 ENCODE Processing Pipeline ee8c5ad680cccc32aeb6d043cbc1a815 https://www.encodeproject.org/files/ENCFF947IMP/@@download/ENCFF947IMP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF402FVP bigWig fold change over control ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF200JPL, ENCFF768UWF, ENCFF876QJH, ENCFF961NOC 1061373008 ENCODE Processing Pipeline ee9d4fc3539c48756a1d934546e43c96 https://www.encodeproject.org/files/ENCFF402FVP/@@download/ENCFF402FVP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF467HTN bed narrowPeak replicated peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF131PPG, ENCFF240LUQ, ENCFF626DRD 986051 ENCODE Processing Pipeline 0772d99b33b0febbe95834250dceff5d https://www.encodeproject.org/files/ENCFF467HTN/@@download/ENCFF467HTN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF157TUI bigBed narrowPeak replicated peaks ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF467HTN 1915703 ENCODE Processing Pipeline 1ecff03913134fec652ac92d0e897e16 https://www.encodeproject.org/files/ENCFF157TUI/@@download/ENCFF157TUI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AKC fastq reads ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1499418491 Bing Ren, UCSD 21eaffc33d425b327f12df93dbe56bd2 SRA:SRR3651503 https://www.encodeproject.org/files/ENCFF002AKC/@@download/ENCFF002AKC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQZ/ released low read length, antibody characterized with exemption, inconsistent control read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF002AKI fastq reads ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1651577599 Bing Ren, UCSD 56b3744e2a93e113ccc5935673c9e646 SRA:SRR3651502 https://www.encodeproject.org/files/ENCFF002AKI/@@download/ENCFF002AKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQV/ released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF945MMD bam alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKC, ENCFF806TVZ 1247217973 ENCODE Processing Pipeline d6cd5a179905c61e6599c912a57689f3 https://www.encodeproject.org/files/ENCFF945MMD/@@download/ENCFF945MMD.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF098LTE bam alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKI, ENCFF806TVZ 1327955911 ENCODE Processing Pipeline 2fa7496e9b7f92a2a0160e8f547fb493 https://www.encodeproject.org/files/ENCFF098LTE/@@download/ENCFF098LTE.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF766AWE bed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098LTE, ENCFF238GCZ, ENCFF945MMD, ENCFF967HVB 1780050 ENCODE Processing Pipeline 32e7003c22d6a8791bd9fe0a84f93b41 https://www.encodeproject.org/files/ENCFF766AWE/@@download/ENCFF766AWE.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF740RQW bed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF945MMD, ENCFF967HVB 1229188 ENCODE Processing Pipeline af20bac3d1bd93e5c2c6ae5b3bb4e957 https://www.encodeproject.org/files/ENCFF740RQW/@@download/ENCFF740RQW.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF638VUZ bed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF098LTE, ENCFF967HVB 1062406 ENCODE Processing Pipeline e29b7423221dac27af75eac2b734d53c https://www.encodeproject.org/files/ENCFF638VUZ/@@download/ENCFF638VUZ.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF730AVS bigBed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF740RQW 2312901 ENCODE Processing Pipeline 5dd820b098449677b736cf9e75a1bce7 https://www.encodeproject.org/files/ENCFF730AVS/@@download/ENCFF730AVS.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF006LCR bigBed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF638VUZ 2021404 ENCODE Processing Pipeline e5ccb2d8eb86a40cd9619baf79c2bd1c https://www.encodeproject.org/files/ENCFF006LCR/@@download/ENCFF006LCR.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF690ITP bigWig signal p-value ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF945MMD, ENCFF967HVB 450772402 ENCODE Processing Pipeline 576f3e25f33aa542c141d16ea947d2c0 https://www.encodeproject.org/files/ENCFF690ITP/@@download/ENCFF690ITP.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF994UUY bigBed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF766AWE 3844056 ENCODE Processing Pipeline 1cd660a56a0229f01387b5192ae068ff https://www.encodeproject.org/files/ENCFF994UUY/@@download/ENCFF994UUY.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF847MKX bigWig signal p-value ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF098LTE, ENCFF967HVB 447716848 ENCODE Processing Pipeline d4bc1cf573679e9ba77d5bb5369a97a8 https://www.encodeproject.org/files/ENCFF847MKX/@@download/ENCFF847MKX.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF042PSL bigWig signal p-value ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098LTE, ENCFF238GCZ, ENCFF945MMD, ENCFF967HVB 862176465 ENCODE Processing Pipeline a283ff43d07b475086dd241041703105 https://www.encodeproject.org/files/ENCFF042PSL/@@download/ENCFF042PSL.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF508PEA bigWig fold change over control ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF945MMD, ENCFF967HVB 566538561 ENCODE Processing Pipeline 8721f487d1943dde3c7b084a2ebbc4ba https://www.encodeproject.org/files/ENCFF508PEA/@@download/ENCFF508PEA.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF747AEJ bigWig fold change over control ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF098LTE, ENCFF967HVB 455251994 ENCODE Processing Pipeline 21e2548288a11fd0136ab1c77e142d20 https://www.encodeproject.org/files/ENCFF747AEJ/@@download/ENCFF747AEJ.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF230MXQ bigWig fold change over control ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098LTE, ENCFF238GCZ, ENCFF945MMD, ENCFF967HVB 902534395 ENCODE Processing Pipeline 9c4b37c38c8973c82a1aff3a80fd9967 https://www.encodeproject.org/files/ENCFF230MXQ/@@download/ENCFF230MXQ.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF581TKM bed narrowPeak replicated peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF638VUZ, ENCFF740RQW, ENCFF766AWE 600780 ENCODE Processing Pipeline 07e40b6352bdfa9e1241890c9662365f https://www.encodeproject.org/files/ENCFF581TKM/@@download/ENCFF581TKM.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF719EGW bigBed narrowPeak replicated peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF581TKM 1364483 ENCODE Processing Pipeline d3010fe65e8cdb3f93fb794e9d01ce52 https://www.encodeproject.org/files/ENCFF719EGW/@@download/ENCFF719EGW.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF865SJR bam unfiltered alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKC, ENCFF018NEO 1837269981 ENCODE Processing Pipeline bc6f06998533041ea1289a6cc9d62d29 https://www.encodeproject.org/files/ENCFF865SJR/@@download/ENCFF865SJR.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF036YBK bam unfiltered alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKI, ENCFF018NEO 1426305784 ENCODE Processing Pipeline fbbb9a6f7b1296f378710785ce0c082c https://www.encodeproject.org/files/ENCFF036YBK/@@download/ENCFF036YBK.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF526PLC bam alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKI, ENCFF018NEO 1007697776 ENCODE Processing Pipeline d42c96e5a8d537f27f9ef6316a24bb77 https://www.encodeproject.org/files/ENCFF526PLC/@@download/ENCFF526PLC.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF867HNK bam alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKC, ENCFF018NEO 1246913888 ENCODE Processing Pipeline 1245257dae25b2ba5d6d9574133997c3 https://www.encodeproject.org/files/ENCFF867HNK/@@download/ENCFF867HNK.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF647HDP bed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF858PPY, ENCFF867HNK 1428276 ENCODE Processing Pipeline 88d95fc74115889c10203f8bba01f9d9 https://www.encodeproject.org/files/ENCFF647HDP/@@download/ENCFF647HDP.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF448LQK bed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF526PLC, ENCFF858PPY 904638 ENCODE Processing Pipeline a3df2eba3e12d2cd82afd9616880d855 https://www.encodeproject.org/files/ENCFF448LQK/@@download/ENCFF448LQK.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF804QOT bed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF507BQX, ENCFF526PLC, ENCFF858PPY, ENCFF867HNK 1174694 ENCODE Processing Pipeline fbe57e2e1f6e0a327587cfe6d0ab4223 https://www.encodeproject.org/files/ENCFF804QOT/@@download/ENCFF804QOT.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF274VOK bigBed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF647HDP 2743105 ENCODE Processing Pipeline 9d54c2e35d6384191a1c6d8534fabd5d https://www.encodeproject.org/files/ENCFF274VOK/@@download/ENCFF274VOK.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF110CNA bigBed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF448LQK 1807114 ENCODE Processing Pipeline 86a391dad868a6674366658c63f3362f https://www.encodeproject.org/files/ENCFF110CNA/@@download/ENCFF110CNA.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF865SAP bigBed narrowPeak peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF804QOT 2828309 ENCODE Processing Pipeline bbdf829afbcd3b743773578b5018a0d1 https://www.encodeproject.org/files/ENCFF865SAP/@@download/ENCFF865SAP.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF584BNQ bigWig signal p-value ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF858PPY, ENCFF867HNK 487382634 ENCODE Processing Pipeline 60115c7a051498a8276aafbb8828c724 https://www.encodeproject.org/files/ENCFF584BNQ/@@download/ENCFF584BNQ.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF471XFR bigWig signal p-value ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF507BQX, ENCFF526PLC, ENCFF858PPY, ENCFF867HNK 860002429 ENCODE Processing Pipeline 4f8c1044c464b61091a7a6e0e8913415 https://www.encodeproject.org/files/ENCFF471XFR/@@download/ENCFF471XFR.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF890MDB bigWig signal p-value ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF526PLC, ENCFF858PPY 405808644 ENCODE Processing Pipeline da865a35b32bec48b0a58133c60974fc https://www.encodeproject.org/files/ENCFF890MDB/@@download/ENCFF890MDB.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF110XZG bigWig fold change over control ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF858PPY, ENCFF867HNK 576187935 ENCODE Processing Pipeline 68297a218d8c10567191205ddeea6db6 https://www.encodeproject.org/files/ENCFF110XZG/@@download/ENCFF110XZG.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF585RHJ bigWig fold change over control ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF526PLC, ENCFF858PPY 424636890 ENCODE Processing Pipeline 02384651cf46416bbca8d13df81b8ce8 https://www.encodeproject.org/files/ENCFF585RHJ/@@download/ENCFF585RHJ.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF028YVD bigWig fold change over control ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF507BQX, ENCFF526PLC, ENCFF858PPY, ENCFF867HNK 874532232 ENCODE Processing Pipeline 3297391ee32caf6afa0a8db0f28e419a https://www.encodeproject.org/files/ENCFF028YVD/@@download/ENCFF028YVD.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF146MHI bed narrowPeak replicated peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF448LQK, ENCFF647HDP, ENCFF804QOT 557086 ENCODE Processing Pipeline 115ba58b82cadad5208ab956368ee2ca https://www.encodeproject.org/files/ENCFF146MHI/@@download/ENCFF146MHI.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF865KQB bigBed narrowPeak replicated peaks ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF146MHI 1089822 ENCODE Processing Pipeline de87e5191f4f7decb2adf487d76054d9 https://www.encodeproject.org/files/ENCFF865KQB/@@download/ENCFF865KQB.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF002BGT fastq reads ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 656984471 Bing Ren, UCSD 1bff31d306f766aff1296af7c0db011f SRA:SRR3651554 https://www.encodeproject.org/files/ENCFF002BGT/@@download/ENCFF002BGT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQE/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BGU fastq reads ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 916546049 Bing Ren, UCSD ad1fd074404e2c6c9859f77c820c1707 SRA:SRR3651556 https://www.encodeproject.org/files/ENCFF002BGU/@@download/ENCFF002BGU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQC/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF665KBE fastq reads ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 598184222 Bing Ren, UCSD 94a71a6530a745e85903fbfeb15bc3b8 SRA:SRR3651555 https://www.encodeproject.org/files/ENCFF665KBE/@@download/ENCFF665KBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQE/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF080WRH fastq reads ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 185924420 Bing Ren, UCSD 2b46928552785acb529c2f24d31f82f3 SRA:SRR3651557 https://www.encodeproject.org/files/ENCFF080WRH/@@download/ENCFF080WRH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQC/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF100YHB bam alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGT, ENCFF665KBE, ENCFF806TVZ 1279876726 ENCODE Processing Pipeline 32f9acd63999c4514233132965cd47ce https://www.encodeproject.org/files/ENCFF100YHB/@@download/ENCFF100YHB.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF515DVN bam alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGU, ENCFF080WRH, ENCFF806TVZ 1058537672 ENCODE Processing Pipeline 09f701da7339a5eb52832a5c416cf167 https://www.encodeproject.org/files/ENCFF515DVN/@@download/ENCFF515DVN.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF715REH bed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF100YHB, ENCFF387UYW, ENCFF999TAG 1936126 ENCODE Processing Pipeline 7be086d9bdbf33cedbb1fc0e43409b6f https://www.encodeproject.org/files/ENCFF715REH/@@download/ENCFF715REH.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF263BKA bigWig signal p-value ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF100YHB, ENCFF387UYW, ENCFF999TAG 495954497 ENCODE Processing Pipeline 7b5c6b6fa2987e1f4198978131958ec5 https://www.encodeproject.org/files/ENCFF263BKA/@@download/ENCFF263BKA.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF195LPK bed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF515DVN, ENCFF999TAG 2413434 ENCODE Processing Pipeline 8a324f367e23e970bd791369a665eb20 https://www.encodeproject.org/files/ENCFF195LPK/@@download/ENCFF195LPK.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF082VID bigBed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF715REH 4206681 ENCODE Processing Pipeline c01d4d9ed301afcdbe011ff896ec2027 https://www.encodeproject.org/files/ENCFF082VID/@@download/ENCFF082VID.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF753NNP bigBed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF899MSU 4285450 ENCODE Processing Pipeline 65dc660cd83650c6a1b4e3f2cad0f9d3 https://www.encodeproject.org/files/ENCFF753NNP/@@download/ENCFF753NNP.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF899MSU bed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100YHB, ENCFF387UYW, ENCFF515DVN, ENCFF999TAG 2045857 ENCODE Processing Pipeline e31fb60bc7ddeecd45c68870dc8ad970 https://www.encodeproject.org/files/ENCFF899MSU/@@download/ENCFF899MSU.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF391AQZ bigBed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF195LPK 5036518 ENCODE Processing Pipeline 24ad23a05fd6ec1416dec70697b9c5eb https://www.encodeproject.org/files/ENCFF391AQZ/@@download/ENCFF391AQZ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF490BEK bigWig signal p-value ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF515DVN, ENCFF999TAG 513307082 ENCODE Processing Pipeline f7d4af7e3ec1545492a5aa75eae73980 https://www.encodeproject.org/files/ENCFF490BEK/@@download/ENCFF490BEK.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF985TAC bigWig signal p-value ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100YHB, ENCFF387UYW, ENCFF515DVN, ENCFF999TAG 621312000 ENCODE Processing Pipeline bf9790769a92e9f76a9f3a93df51b12c https://www.encodeproject.org/files/ENCFF985TAC/@@download/ENCFF985TAC.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF908RYV bigWig fold change over control ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF100YHB, ENCFF387UYW, ENCFF999TAG 534740364 ENCODE Processing Pipeline 39e6c29f23a44e45b1b0619848e4bf85 https://www.encodeproject.org/files/ENCFF908RYV/@@download/ENCFF908RYV.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF365BTJ bigWig fold change over control ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF515DVN, ENCFF999TAG 507622577 ENCODE Processing Pipeline 2d5490cfe99fdc054cf8ef724b355305 https://www.encodeproject.org/files/ENCFF365BTJ/@@download/ENCFF365BTJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF079KZH bigWig fold change over control ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100YHB, ENCFF387UYW, ENCFF515DVN, ENCFF999TAG 789717874 ENCODE Processing Pipeline fe5a2408bb0054c973597cd5a32367af https://www.encodeproject.org/files/ENCFF079KZH/@@download/ENCFF079KZH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF081BNM bigBed narrowPeak replicated peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF266QNN 2865647 ENCODE Processing Pipeline 83fe5af34a80f21faf8e57d6371dc8df https://www.encodeproject.org/files/ENCFF081BNM/@@download/ENCFF081BNM.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF266QNN bed narrowPeak replicated peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF195LPK, ENCFF715REH, ENCFF899MSU 1557749 ENCODE Processing Pipeline 4bce4e227a0e12fa0c2fbda02b253ba6 https://www.encodeproject.org/files/ENCFF266QNN/@@download/ENCFF266QNN.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF359FNW bam unfiltered alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGT, ENCFF018NEO, ENCFF665KBE 1504430552 ENCODE Processing Pipeline 78cf8fa782bcd14e259ff06103f23830 https://www.encodeproject.org/files/ENCFF359FNW/@@download/ENCFF359FNW.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF821PFO bam unfiltered alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGU, ENCFF018NEO, ENCFF080WRH 1387652783 ENCODE Processing Pipeline ba10453cffb43ad6ab9c69c1e3ed4a1d https://www.encodeproject.org/files/ENCFF821PFO/@@download/ENCFF821PFO.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF727SKQ bam alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGU, ENCFF018NEO, ENCFF080WRH 1005552627 ENCODE Processing Pipeline 3b5813b15639ccf9d6b65c8db5161776 https://www.encodeproject.org/files/ENCFF727SKQ/@@download/ENCFF727SKQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF177RNG bam alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGT, ENCFF018NEO, ENCFF665KBE 1129433414 ENCODE Processing Pipeline 53c3171f0aa4cb1e567b33e2e0b978d3 https://www.encodeproject.org/files/ENCFF177RNG/@@download/ENCFF177RNG.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF888GMB bigBed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248CEG 4158732 ENCODE Processing Pipeline 4b57d6498bbd77112024cb64a618b369 https://www.encodeproject.org/files/ENCFF888GMB/@@download/ENCFF888GMB.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF248CEG bed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF177RNG, ENCFF446WFN 1891536 ENCODE Processing Pipeline 06fc55ed843bfe2f9d2db5ae970edef6 https://www.encodeproject.org/files/ENCFF248CEG/@@download/ENCFF248CEG.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF095ECA bed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF727SKQ 2338665 ENCODE Processing Pipeline d77c7090dad562214c847ffa51bc9203 https://www.encodeproject.org/files/ENCFF095ECA/@@download/ENCFF095ECA.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF075MKU bed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF177RNG, ENCFF446WFN, ENCFF727SKQ 1987612 ENCODE Processing Pipeline 7e1f863236b993b9125b6eb3421d9999 https://www.encodeproject.org/files/ENCFF075MKU/@@download/ENCFF075MKU.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF541IDF bigBed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF075MKU 4250925 ENCODE Processing Pipeline beb5e42ed38953f8376f623b10d2156d https://www.encodeproject.org/files/ENCFF541IDF/@@download/ENCFF541IDF.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF845ELS bigWig signal p-value ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF727SKQ 456052176 ENCODE Processing Pipeline 784f4947dee2ba01a8f49c96cfd24488 https://www.encodeproject.org/files/ENCFF845ELS/@@download/ENCFF845ELS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF273BKV bigBed narrowPeak peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF095ECA 4891657 ENCODE Processing Pipeline bbc6fba83f7726d2247421093e006da9 https://www.encodeproject.org/files/ENCFF273BKV/@@download/ENCFF273BKV.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF423XQK bigWig signal p-value ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF177RNG, ENCFF446WFN 550618628 ENCODE Processing Pipeline 473140c19c9cdf731d971491d3cf9ed7 https://www.encodeproject.org/files/ENCFF423XQK/@@download/ENCFF423XQK.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF702LYA bigWig signal p-value ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF177RNG, ENCFF446WFN, ENCFF727SKQ 658393101 ENCODE Processing Pipeline dc52a6056dbb2e7a45f9ad79dfd7dee8 https://www.encodeproject.org/files/ENCFF702LYA/@@download/ENCFF702LYA.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF991YLQ bigWig fold change over control ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF177RNG, ENCFF446WFN 523859738 ENCODE Processing Pipeline 608923849e7e216f2e86981581a989d4 https://www.encodeproject.org/files/ENCFF991YLQ/@@download/ENCFF991YLQ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF372WGO bigWig fold change over control ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF727SKQ 482318282 ENCODE Processing Pipeline 8bbd1c9ca591306a5ff98777cb8d09ca https://www.encodeproject.org/files/ENCFF372WGO/@@download/ENCFF372WGO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF553YRO bigWig fold change over control ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF177RNG, ENCFF446WFN, ENCFF727SKQ 817646659 ENCODE Processing Pipeline 81a4888c129184257c000c77679e4584 https://www.encodeproject.org/files/ENCFF553YRO/@@download/ENCFF553YRO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF367TAY bed narrowPeak replicated peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF075MKU, ENCFF095ECA, ENCFF248CEG 1590250 ENCODE Processing Pipeline 1445d949bbce736385aa4fcc74a4e214 https://www.encodeproject.org/files/ENCFF367TAY/@@download/ENCFF367TAY.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF457GEC bigBed narrowPeak replicated peaks ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF367TAY 2947215 ENCODE Processing Pipeline f99ebc0720649640f1864d75d0da8f68 https://www.encodeproject.org/files/ENCFF457GEC/@@download/ENCFF457GEC.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF415TZY fastq reads ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2838051965 Bing Ren, UCSD 7520548819f1f39da70a412706f4aa4a SRA:SRR3652709 https://www.encodeproject.org/files/ENCFF415TZY/@@download/ENCFF415TZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF393EAJ/ released inconsistent platforms ENCFF224CAY fastq reads ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2843030843 Bing Ren, UCSD a5bca65289fc42e088445d1fb2e9d6d5 SRA:SRR3652708 https://www.encodeproject.org/files/ENCFF224CAY/@@download/ENCFF224CAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF545UQA/ released inconsistent platforms ENCFF247HIU bam alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF224CAY, ENCFF806TVZ 2667190575 ENCODE Processing Pipeline 49c2c0ccffe842dc8c4fc48f9341d516 https://www.encodeproject.org/files/ENCFF247HIU/@@download/ENCFF247HIU.bam mm10-minimal archived inconsistent platforms ENCFF155NAB bam alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF415TZY, ENCFF806TVZ 2667951153 ENCODE Processing Pipeline f5a18c7412291398abcba945a16025a4 https://www.encodeproject.org/files/ENCFF155NAB/@@download/ENCFF155NAB.bam mm10-minimal archived inconsistent platforms ENCFF870VLG bed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF247HIU, ENCFF371GCA, ENCFF627MYB 4003011 ENCODE Processing Pipeline b6428f577996bbc509b50cdd7da4185f https://www.encodeproject.org/files/ENCFF870VLG/@@download/ENCFF870VLG.bed.gz mm10-minimal archived inconsistent platforms ENCFF972FDO bed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF155NAB, ENCFF371GCA, ENCFF627MYB 4021224 ENCODE Processing Pipeline e0684c7aa5739bd1c3659a17fce7f8b8 https://www.encodeproject.org/files/ENCFF972FDO/@@download/ENCFF972FDO.bed.gz mm10-minimal archived inconsistent platforms ENCFF994LBT bigBed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF870VLG 10187721 ENCODE Processing Pipeline 65a8d1a4990521516eac51d2a22a13d9 https://www.encodeproject.org/files/ENCFF994LBT/@@download/ENCFF994LBT.bigBed mm10-minimal archived inconsistent platforms ENCFF836JSS bed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF155NAB, ENCFF247HIU, ENCFF371GCA, ENCFF627MYB 3656556 ENCODE Processing Pipeline 806853a7f4456d65afb67dc81070c478 https://www.encodeproject.org/files/ENCFF836JSS/@@download/ENCFF836JSS.bed.gz mm10-minimal archived inconsistent platforms ENCFF507LMD bigBed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF836JSS 9407806 ENCODE Processing Pipeline fe9e6d757f6c13afcd6a32159453eab5 https://www.encodeproject.org/files/ENCFF507LMD/@@download/ENCFF507LMD.bigBed mm10-minimal archived inconsistent platforms ENCFF992FXI bigBed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF972FDO 10210810 ENCODE Processing Pipeline a9d22c5b255b849ffa8a2555a9265ba0 https://www.encodeproject.org/files/ENCFF992FXI/@@download/ENCFF992FXI.bigBed mm10-minimal archived inconsistent platforms ENCFF374HSL bigWig signal p-value ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF247HIU, ENCFF371GCA, ENCFF627MYB 879507467 ENCODE Processing Pipeline bf499ec86234932370b997cbaeb13ca9 https://www.encodeproject.org/files/ENCFF374HSL/@@download/ENCFF374HSL.bigWig mm10-minimal archived inconsistent platforms ENCFF133HRS bigWig signal p-value ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF155NAB, ENCFF371GCA, ENCFF627MYB 751770545 ENCODE Processing Pipeline a729c78e85b92a4dbba5c8a7a1dae601 https://www.encodeproject.org/files/ENCFF133HRS/@@download/ENCFF133HRS.bigWig mm10-minimal archived inconsistent platforms ENCFF723BGD bigWig signal p-value ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF155NAB, ENCFF247HIU, ENCFF371GCA, ENCFF627MYB 1188937070 ENCODE Processing Pipeline d30f9c8efb1febf61e44191065ecaadf https://www.encodeproject.org/files/ENCFF723BGD/@@download/ENCFF723BGD.bigWig mm10-minimal archived inconsistent platforms ENCFF324UPR bigWig fold change over control ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF247HIU, ENCFF371GCA, ENCFF627MYB 999952616 ENCODE Processing Pipeline 35e3f1f67eea064f18a09b8f72240be3 https://www.encodeproject.org/files/ENCFF324UPR/@@download/ENCFF324UPR.bigWig mm10-minimal archived inconsistent platforms ENCFF840SQF bigWig fold change over control ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF155NAB, ENCFF371GCA, ENCFF627MYB 988239149 ENCODE Processing Pipeline 0b3bf5932aca39b47321441b6ae06c96 https://www.encodeproject.org/files/ENCFF840SQF/@@download/ENCFF840SQF.bigWig mm10-minimal archived inconsistent platforms ENCFF363ETH bed narrowPeak replicated peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF836JSS, ENCFF870VLG, ENCFF972FDO 4108298 ENCODE Processing Pipeline 12db4e7d3889d35ded193120c17206b8 https://www.encodeproject.org/files/ENCFF363ETH/@@download/ENCFF363ETH.bed.gz mm10-minimal archived inconsistent platforms ENCFF275XOL bigWig fold change over control ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF155NAB, ENCFF247HIU, ENCFF371GCA, ENCFF627MYB 1510982665 ENCODE Processing Pipeline be4c3069569c2a8d327e097ef1550fbe https://www.encodeproject.org/files/ENCFF275XOL/@@download/ENCFF275XOL.bigWig mm10-minimal archived inconsistent platforms ENCFF645QHO bigBed narrowPeak replicated peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF363ETH 8042613 ENCODE Processing Pipeline f5398bfe1bf289db3701a5be462285ef https://www.encodeproject.org/files/ENCFF645QHO/@@download/ENCFF645QHO.bigBed mm10-minimal archived inconsistent platforms ENCFF124KBR bam unfiltered alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF224CAY 3335246883 ENCODE Processing Pipeline fda7eb4a5b3fe3ef2b006ecf23fa47ed https://www.encodeproject.org/files/ENCFF124KBR/@@download/ENCFF124KBR.bam mm10 released inconsistent platforms ENCFF110ITN bam unfiltered alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF415TZY 3322338286 ENCODE Processing Pipeline 50a5eb565545bca47b7326ad1ec05667 https://www.encodeproject.org/files/ENCFF110ITN/@@download/ENCFF110ITN.bam mm10 released inconsistent platforms ENCFF150DAL bam alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF224CAY 2666767955 ENCODE Processing Pipeline b6419e000c69aebbad6464798f59bdf4 https://www.encodeproject.org/files/ENCFF150DAL/@@download/ENCFF150DAL.bam mm10 released inconsistent platforms ENCFF145LTP bam alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF415TZY 2667514830 ENCODE Processing Pipeline 741c5548642a9600d489e79241dbf5c7 https://www.encodeproject.org/files/ENCFF145LTP/@@download/ENCFF145LTP.bam mm10 released inconsistent platforms ENCFF935MFM bed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF150DAL, ENCFF884PDZ 3791231 ENCODE Processing Pipeline 7b6fd55484f81fafa0c49063ea5e8e95 https://www.encodeproject.org/files/ENCFF935MFM/@@download/ENCFF935MFM.bed.gz mm10 released inconsistent platforms ENCFF601EFU bed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF145LTP 3547540 ENCODE Processing Pipeline f5d88242dcb4400a728380a3c326bd7d https://www.encodeproject.org/files/ENCFF601EFU/@@download/ENCFF601EFU.bed.gz mm10 released inconsistent platforms ENCFF614AZQ bed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF145LTP, ENCFF150DAL, ENCFF884PDZ 4080385 ENCODE Processing Pipeline 613e3132de662cd3fe150a7f39f985cf https://www.encodeproject.org/files/ENCFF614AZQ/@@download/ENCFF614AZQ.bed.gz mm10 released inconsistent platforms ENCFF179LDO bigBed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF935MFM 9721306 ENCODE Processing Pipeline ca7f6be715f55d552a47b3f50b5cf5f1 https://www.encodeproject.org/files/ENCFF179LDO/@@download/ENCFF179LDO.bigBed mm10 released inconsistent platforms ENCFF874YEO bigBed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF601EFU 9126881 ENCODE Processing Pipeline 447825aae9912d0021c72cfcc070ac09 https://www.encodeproject.org/files/ENCFF874YEO/@@download/ENCFF874YEO.bigBed mm10 released inconsistent platforms ENCFF874AJX bigBed narrowPeak peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF614AZQ 10377986 ENCODE Processing Pipeline 70f7ca1fa1ede7d4b65f2217a32210b6 https://www.encodeproject.org/files/ENCFF874AJX/@@download/ENCFF874AJX.bigBed mm10 released inconsistent platforms ENCFF286QTU bigWig signal p-value ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF150DAL, ENCFF884PDZ 825538775 ENCODE Processing Pipeline 8e212bc6975d44e1e0a80addfe056864 https://www.encodeproject.org/files/ENCFF286QTU/@@download/ENCFF286QTU.bigWig mm10 released inconsistent platforms ENCFF711HAX bigWig signal p-value ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF145LTP 841367246 ENCODE Processing Pipeline bad8cc16ce6a63f4c48d8a0690a1283a https://www.encodeproject.org/files/ENCFF711HAX/@@download/ENCFF711HAX.bigWig mm10 released inconsistent platforms ENCFF071MAU bigWig signal p-value ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF145LTP, ENCFF150DAL, ENCFF884PDZ 1399580422 ENCODE Processing Pipeline b52ba7bd4cc67798149ade89a8cd9e0f https://www.encodeproject.org/files/ENCFF071MAU/@@download/ENCFF071MAU.bigWig mm10 released inconsistent platforms ENCFF893HWH bigWig fold change over control ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF150DAL, ENCFF884PDZ 1071054049 ENCODE Processing Pipeline 2fa7f90628a87618e2bf1c9ba449924d https://www.encodeproject.org/files/ENCFF893HWH/@@download/ENCFF893HWH.bigWig mm10 released inconsistent platforms ENCFF256FOE bigWig fold change over control ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF145LTP 891652114 ENCODE Processing Pipeline 03f54951783554b2a693d303b8a1f3fb https://www.encodeproject.org/files/ENCFF256FOE/@@download/ENCFF256FOE.bigWig mm10 released inconsistent platforms ENCFF673JMS bigWig fold change over control ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF145LTP, ENCFF150DAL, ENCFF884PDZ 1534330523 ENCODE Processing Pipeline b5a5c8c3ca9a9267efc4f2d2f46e5bfd https://www.encodeproject.org/files/ENCFF673JMS/@@download/ENCFF673JMS.bigWig mm10 released inconsistent platforms ENCFF649ZZL bed narrowPeak replicated peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF601EFU, ENCFF614AZQ, ENCFF935MFM 3984122 ENCODE Processing Pipeline da079f2cf2ed49be7babb0d8e682a35b https://www.encodeproject.org/files/ENCFF649ZZL/@@download/ENCFF649ZZL.bed.gz mm10 released inconsistent platforms ENCFF209ZUW bigBed narrowPeak replicated peaks ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF649ZZL 7730119 ENCODE Processing Pipeline a55fd08be428581d62fda16a3d7d533e https://www.encodeproject.org/files/ENCFF209ZUW/@@download/ENCFF209ZUW.bigBed mm10 released inconsistent platforms ENCFF002AQD fastq reads ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 961194831 Bing Ren, UCSD 2107d2861d428090b012bd5f97140914 SRA:SRR3652945 https://www.encodeproject.org/files/ENCFF002AQD/@@download/ENCFF002AQD.fastq.gz Illumina HiSeq 2500 released low read depth insufficient read depth ENCFF002AQH fastq reads ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1014391791 Bing Ren, UCSD c518eaf4b07a8b075a8a2ddc6859adeb SRA:SRR3652946 https://www.encodeproject.org/files/ENCFF002AQH/@@download/ENCFF002AQH.fastq.gz Illumina HiSeq 2500 released low read depth insufficient read depth ENCFF833WXB bam unfiltered alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQD, ENCFF806TVZ 1015076607 ENCODE Processing Pipeline 071e3f2b473a43d79c5944d08dd8e669 https://www.encodeproject.org/files/ENCFF833WXB/@@download/ENCFF833WXB.bam mm10-minimal archived low read depth insufficient read depth ENCFF990QFT bam unfiltered alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQH, ENCFF806TVZ 1068491555 ENCODE Processing Pipeline 8e6693a10606e15d91edc48e9a467e71 https://www.encodeproject.org/files/ENCFF990QFT/@@download/ENCFF990QFT.bam mm10-minimal archived low read depth insufficient read depth ENCFF999ZTB bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQH, ENCFF806TVZ 616905470 ENCODE Processing Pipeline 138afc1e194a0e2d6dcfe001d964f741 https://www.encodeproject.org/files/ENCFF999ZTB/@@download/ENCFF999ZTB.bam mm10-minimal archived low read depth insufficient read depth ENCFF015AUK bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQD, ENCFF806TVZ 593102134 ENCODE Processing Pipeline 1a23cbcb9a69fd2d75014fedb1667a70 https://www.encodeproject.org/files/ENCFF015AUK/@@download/ENCFF015AUK.bam mm10-minimal archived low read depth insufficient read depth ENCFF593AHB bam unfiltered alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQH, ENCFF018NEO 1069201333 ENCODE Processing Pipeline 5f08e8ee551d9dd5468a21d5928cc883 https://www.encodeproject.org/files/ENCFF593AHB/@@download/ENCFF593AHB.bam mm10 released low read depth insufficient read depth ENCFF863NZX bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQH, ENCFF018NEO 616707328 ENCODE Processing Pipeline ff2b43332d872fdccf769705402cbd69 https://www.encodeproject.org/files/ENCFF863NZX/@@download/ENCFF863NZX.bam mm10 released low read depth insufficient read depth ENCFF822IDO bam unfiltered alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQD, ENCFF018NEO 1015830702 ENCODE Processing Pipeline 34f87d7e694d0f9fe3f025dda63f9172 https://www.encodeproject.org/files/ENCFF822IDO/@@download/ENCFF822IDO.bam mm10 released low read depth insufficient read depth ENCFF399OUP bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQD, ENCFF018NEO 592939093 ENCODE Processing Pipeline e3b01203d4faa133f9a4dbd6d143a1f7 https://www.encodeproject.org/files/ENCFF399OUP/@@download/ENCFF399OUP.bam mm10 released low read depth insufficient read depth ENCFF242XYX bam unfiltered alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQH, ENCFF018NEO 881918589 ENCODE Processing Pipeline 5aa81c1fc394db8f38d7fda84f526532 https://www.encodeproject.org/files/ENCFF242XYX/@@download/ENCFF242XYX.bam mm10 released low read depth insufficient read depth ENCFF267IIS bam unfiltered alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQD, ENCFF018NEO 837719027 ENCODE Processing Pipeline 041acdee9def9e28d0208e5ed2cb477f https://www.encodeproject.org/files/ENCFF267IIS/@@download/ENCFF267IIS.bam mm10 released low read depth insufficient read depth ENCFF957ZHQ bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQH, ENCFF018NEO 480389505 ENCODE Processing Pipeline 321e665f741d8a05a85573b4d467959b https://www.encodeproject.org/files/ENCFF957ZHQ/@@download/ENCFF957ZHQ.bam mm10 released low read depth insufficient read depth ENCFF310BPU bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQD, ENCFF018NEO 459618619 ENCODE Processing Pipeline c5cb04eebd8bba2f55f7f0fbc602fac8 https://www.encodeproject.org/files/ENCFF310BPU/@@download/ENCFF310BPU.bam mm10 released low read depth insufficient read depth ENCFF001NQR bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NQU 428286373 Michael Snyder, Stanford 41b4fa8c6605822a8a7b5fbf5120edce https://www.encodeproject.org/files/ENCFF001NQR/@@download/ENCFF001NQR.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NQS bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NQW 423624974 Michael Snyder, Stanford 593f048d56fec79b4af7d8af33b2b776 https://www.encodeproject.org/files/ENCFF001NQS/@@download/ENCFF001NQS.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NQT bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJH 2970789 Michael Snyder, Stanford d9c869144bd403e945ea1a8b8da7491c https://www.encodeproject.org/files/ENCFF001NQT/@@download/ENCFF001NQT.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NQU fastq reads ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 971475366 Michael Snyder, Stanford 0aff2ad97e02a628bdc8c77e1295893e https://www.encodeproject.org/files/ENCFF001NQU/@@download/ENCFF001NQU.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTS/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NQW fastq reads ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 943303315 Michael Snyder, Stanford a81c6f1a8beb3cc77c48e3f6f4744b76 https://www.encodeproject.org/files/ENCFF001NQW/@@download/ENCFF001NQW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTU/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NQY bigWig signal ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NQR, ENCFF001NQS 303778333 Michael Snyder, Stanford e3e9d292327e90ab442ed7261e63f707 https://www.encodeproject.org/files/ENCFF001NQY/@@download/ENCFF001NQY.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001YJH bed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NQR, ENCFF001NQS 1172175 Michael Snyder, Stanford 75671555a6b2b7ee0cc80b27f8232696 https://www.encodeproject.org/files/ENCFF001YJH/@@download/ENCFF001YJH.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF895QHK bam unfiltered alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 987933688 ENCODE Processing Pipeline 46d0f3b037c29c750736b9bcdc98d3c0 https://www.encodeproject.org/files/ENCFF895QHK/@@download/ENCFF895QHK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF020AKZ bam unfiltered alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 1003312563 ENCODE Processing Pipeline f04cfbec7a245d59d9ffea1d8225cca3 https://www.encodeproject.org/files/ENCFF020AKZ/@@download/ENCFF020AKZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF985CUW bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 610485955 ENCODE Processing Pipeline 8131bd3f2960fe0de7233c097b28d7b6 https://www.encodeproject.org/files/ENCFF985CUW/@@download/ENCFF985CUW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF284CFB bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 610945438 ENCODE Processing Pipeline 23a94bbc142d3cb34c911c39da132a7b https://www.encodeproject.org/files/ENCFF284CFB/@@download/ENCFF284CFB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF069TSU bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 540589168 ENCODE Processing Pipeline e2605642c15ffb692ef28b7e242aa2a7 https://www.encodeproject.org/files/ENCFF069TSU/@@download/ENCFF069TSU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF586QBC bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 480493127 ENCODE Processing Pipeline 17c73b3b54ea363174cdda5433ae41dc https://www.encodeproject.org/files/ENCFF586QBC/@@download/ENCFF586QBC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF695GWJ bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 420085509 ENCODE Processing Pipeline d5f3bcaa7f156ce83b7191b656d6d4d0 https://www.encodeproject.org/files/ENCFF695GWJ/@@download/ENCFF695GWJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF762XWB bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 323632906 ENCODE Processing Pipeline dbefbc87e01436303b36de6b06d283da https://www.encodeproject.org/files/ENCFF762XWB/@@download/ENCFF762XWB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF605IRU bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 314138564 ENCODE Processing Pipeline ebfa16c1b35ff8c575c96c2266be32b6 https://www.encodeproject.org/files/ENCFF605IRU/@@download/ENCFF605IRU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF056UBA bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 520489649 ENCODE Processing Pipeline df45d7684eb5bde900f092b32014c241 https://www.encodeproject.org/files/ENCFF056UBA/@@download/ENCFF056UBA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF957XPC bed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 4956899 ENCODE Processing Pipeline de00fcf69485a3923ec9cb1563120d11 https://www.encodeproject.org/files/ENCFF957XPC/@@download/ENCFF957XPC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF406PTJ bed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 4791136 ENCODE Processing Pipeline cc548b90e3c30b2e463d8872d295b283 https://www.encodeproject.org/files/ENCFF406PTJ/@@download/ENCFF406PTJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF237CIS bigBed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF406PTJ 10950591 ENCODE Processing Pipeline 56dc2f1d6443cb4a69a06eba41d2b98b https://www.encodeproject.org/files/ENCFF237CIS/@@download/ENCFF237CIS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF897SDH bigBed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF957XPC 10998333 ENCODE Processing Pipeline 8d4d91ba9f0c921fee215d3b1fae1fd1 https://www.encodeproject.org/files/ENCFF897SDH/@@download/ENCFF897SDH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF855DZF bed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 5451660 ENCODE Processing Pipeline 1cb731023345fce8f1f14b14ca1ca928 https://www.encodeproject.org/files/ENCFF855DZF/@@download/ENCFF855DZF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF965XFW bed narrowPeak conservative idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF406PTJ, ENCFF547MET, ENCFF855DZF, ENCFF957XPC 605994 ENCODE Processing Pipeline ce3443ca071c3ec6b3b91dc54518b95f https://www.encodeproject.org/files/ENCFF965XFW/@@download/ENCFF965XFW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF154JIT bigBed narrowPeak peaks and background as input for IDR ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF855DZF 11428941 ENCODE Processing Pipeline 8cd0188f699a8030f19b917607253364 https://www.encodeproject.org/files/ENCFF154JIT/@@download/ENCFF154JIT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF476QLM bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF965XFW 1091816 ENCODE Processing Pipeline 006699f953ef4de173ac3292a80325aa https://www.encodeproject.org/files/ENCFF476QLM/@@download/ENCFF476QLM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF430UBN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF235LMU 1189602 ENCODE Processing Pipeline 8663a774dd80cb54c4211088966eeeb1 https://www.encodeproject.org/files/ENCFF430UBN/@@download/ENCFF430UBN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF235LMU bed narrowPeak optimal idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF406PTJ, ENCFF547MET, ENCFF855DZF, ENCFF957XPC 677637 ENCODE Processing Pipeline bfe9bbfe82c380439b73ca07c830ff17 https://www.encodeproject.org/files/ENCFF235LMU/@@download/ENCFF235LMU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001ZRJ fastq reads ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 893719443 Bing Ren, UCSD 2f5b6bdee93f9db7085fb1b917ee9b5e SRA:SRR3651442 https://www.encodeproject.org/files/ENCFF001ZRJ/@@download/ENCFF001ZRJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001ZRK fastq reads ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 710145423 Bing Ren, UCSD caedc92d4ff61f25306e0ef81cc72f21 SRA:SRR3651443 https://www.encodeproject.org/files/ENCFF001ZRK/@@download/ENCFF001ZRK.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, mild to moderate bottlenecking, low read depth ENCFF145RIL bam alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRJ, ENCFF806TVZ 726623578 ENCODE Processing Pipeline ed53d6e33df601ffdcca995e6926357a https://www.encodeproject.org/files/ENCFF145RIL/@@download/ENCFF145RIL.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF582CZH bam alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRK, ENCFF806TVZ 569053772 ENCODE Processing Pipeline 89e17efbb49099d7f9ca124445351e72 https://www.encodeproject.org/files/ENCFF582CZH/@@download/ENCFF582CZH.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF482OQU bed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF145RIL, ENCFF656MYX, ENCFF844PWX 1083233 ENCODE Processing Pipeline 2a0d617956fc80dfb060e2afbd21275e https://www.encodeproject.org/files/ENCFF482OQU/@@download/ENCFF482OQU.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF194SXZ bed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF582CZH, ENCFF656MYX, ENCFF844PWX 809577 ENCODE Processing Pipeline fe02aeaf1e66a13404e065a72bf63884 https://www.encodeproject.org/files/ENCFF194SXZ/@@download/ENCFF194SXZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF956ONN bigBed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF482OQU 2672009 ENCODE Processing Pipeline a0355080e9deb8122787c630471e472b https://www.encodeproject.org/files/ENCFF956ONN/@@download/ENCFF956ONN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF511WSH bigBed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF194SXZ 2069008 ENCODE Processing Pipeline 5b0dd51a6181409f24e17a8cd216c695 https://www.encodeproject.org/files/ENCFF511WSH/@@download/ENCFF511WSH.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF255IHY bed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF145RIL, ENCFF582CZH, ENCFF656MYX, ENCFF844PWX 966074 ENCODE Processing Pipeline 7c84435d7b1911ae93408997021441b9 https://www.encodeproject.org/files/ENCFF255IHY/@@download/ENCFF255IHY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF039SIE bigBed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255IHY 2376534 ENCODE Processing Pipeline f9a1d7bccc03546be27e7129f43cd05c https://www.encodeproject.org/files/ENCFF039SIE/@@download/ENCFF039SIE.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF971LWJ bigWig signal p-value ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF145RIL, ENCFF656MYX, ENCFF844PWX 430861209 ENCODE Processing Pipeline 89b7b361805957cab7250e1d3b709fde https://www.encodeproject.org/files/ENCFF971LWJ/@@download/ENCFF971LWJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF407YDO bigWig signal p-value ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF582CZH, ENCFF656MYX, ENCFF844PWX 342775684 ENCODE Processing Pipeline ec9d522296ac968531be4b0ba75b072c https://www.encodeproject.org/files/ENCFF407YDO/@@download/ENCFF407YDO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF942ATV bigWig signal p-value ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF145RIL, ENCFF582CZH, ENCFF656MYX, ENCFF844PWX 540356610 ENCODE Processing Pipeline 74ba798e995066b1adf0a2e6b2203982 https://www.encodeproject.org/files/ENCFF942ATV/@@download/ENCFF942ATV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF312GSX bigWig fold change over control ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF582CZH, ENCFF656MYX, ENCFF844PWX 300204024 ENCODE Processing Pipeline 158459a7808c64daa173f0036007f824 https://www.encodeproject.org/files/ENCFF312GSX/@@download/ENCFF312GSX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF034CTG bigWig fold change over control ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF145RIL, ENCFF656MYX, ENCFF844PWX 371251722 ENCODE Processing Pipeline 384d6ad09500bb50304ae959411fb6e4 https://www.encodeproject.org/files/ENCFF034CTG/@@download/ENCFF034CTG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF882YIX bigBed narrowPeak replicated peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297EQZ 1916175 ENCODE Processing Pipeline 8e4abbd24319889960a89c847bdecef4 https://www.encodeproject.org/files/ENCFF882YIX/@@download/ENCFF882YIX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF017RNC bigWig fold change over control ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF145RIL, ENCFF582CZH, ENCFF656MYX, ENCFF844PWX 542325442 ENCODE Processing Pipeline 1a8533f70039778e583c7b727bc63a4f https://www.encodeproject.org/files/ENCFF017RNC/@@download/ENCFF017RNC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF297EQZ bed narrowPeak replicated peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF194SXZ, ENCFF255IHY, ENCFF482OQU 746367 ENCODE Processing Pipeline 2d43d8ad43d34c80f6835a14ea973be0 https://www.encodeproject.org/files/ENCFF297EQZ/@@download/ENCFF297EQZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF483XXE bam unfiltered alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRJ, ENCFF018NEO 1139541877 ENCODE Processing Pipeline 781cbf4bba44ee4ce2324dc215f1c8fd https://www.encodeproject.org/files/ENCFF483XXE/@@download/ENCFF483XXE.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF526YRA bam unfiltered alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRK, ENCFF018NEO 904609397 ENCODE Processing Pipeline ccac6b9402af903ade65f3ee3e0b347b https://www.encodeproject.org/files/ENCFF526YRA/@@download/ENCFF526YRA.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF031OBD bam alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRK, ENCFF018NEO 568921165 ENCODE Processing Pipeline 31fdc5030d18d55606b1fa94e45c2b75 https://www.encodeproject.org/files/ENCFF031OBD/@@download/ENCFF031OBD.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF834BEU bam alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRJ, ENCFF018NEO 726465682 ENCODE Processing Pipeline 3058ab5628d01291a45c83e0d2409878 https://www.encodeproject.org/files/ENCFF834BEU/@@download/ENCFF834BEU.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF059WEV bed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF031OBD, ENCFF627JLU 809670 ENCODE Processing Pipeline 494257d10122e5ba714b098b8d3ea977 https://www.encodeproject.org/files/ENCFF059WEV/@@download/ENCFF059WEV.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF996BJR bed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF834BEU 1083621 ENCODE Processing Pipeline 825d76326ecdab5b06315400308d7f40 https://www.encodeproject.org/files/ENCFF996BJR/@@download/ENCFF996BJR.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF143CRQ bed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF031OBD, ENCFF627JLU, ENCFF834BEU 966568 ENCODE Processing Pipeline 524348e1220f73872dc9bc413c864678 https://www.encodeproject.org/files/ENCFF143CRQ/@@download/ENCFF143CRQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF191TLB bigBed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF143CRQ 2378257 ENCODE Processing Pipeline 6d934147e179adc8b11c29b0bef75982 https://www.encodeproject.org/files/ENCFF191TLB/@@download/ENCFF191TLB.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF676MVQ bigBed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF996BJR 2671985 ENCODE Processing Pipeline 214c090f055213865cdf70e6a0374a7b https://www.encodeproject.org/files/ENCFF676MVQ/@@download/ENCFF676MVQ.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF443YWI bigBed narrowPeak peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF059WEV 2071007 ENCODE Processing Pipeline 239215e8d2dc21a1b9192ac824246a9b https://www.encodeproject.org/files/ENCFF443YWI/@@download/ENCFF443YWI.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF979XME bigWig signal p-value ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF834BEU 341643217 ENCODE Processing Pipeline 4a68012a3290e1f3d44a22131ac19130 https://www.encodeproject.org/files/ENCFF979XME/@@download/ENCFF979XME.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF028DRG bigWig signal p-value ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF031OBD, ENCFF627JLU 337338290 ENCODE Processing Pipeline 22e6721ca7ffab2fe37816f38337393d https://www.encodeproject.org/files/ENCFF028DRG/@@download/ENCFF028DRG.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF552REP bigWig signal p-value ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF031OBD, ENCFF627JLU, ENCFF834BEU 540406827 ENCODE Processing Pipeline edc7dffe9d21d58f6029b265a960b991 https://www.encodeproject.org/files/ENCFF552REP/@@download/ENCFF552REP.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF111ZHV bigWig fold change over control ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF834BEU 372315524 ENCODE Processing Pipeline 2d4c8df8d974440584ec9040a04820e6 https://www.encodeproject.org/files/ENCFF111ZHV/@@download/ENCFF111ZHV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF177SVC bigWig fold change over control ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF031OBD, ENCFF627JLU, ENCFF834BEU 543980815 ENCODE Processing Pipeline 0b70f5c9cc5afe367e609102f24b0b40 https://www.encodeproject.org/files/ENCFF177SVC/@@download/ENCFF177SVC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF242GIC bigWig fold change over control ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF031OBD, ENCFF627JLU 299893568 ENCODE Processing Pipeline 1b7cab49e40fbcc25c79174a3da4ba7f https://www.encodeproject.org/files/ENCFF242GIC/@@download/ENCFF242GIC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF203QTV bed narrowPeak replicated peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF059WEV, ENCFF143CRQ, ENCFF996BJR 746602 ENCODE Processing Pipeline 382dec7ce6e1e991538bc80ad49d959d https://www.encodeproject.org/files/ENCFF203QTV/@@download/ENCFF203QTV.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF299SRH bigBed narrowPeak replicated peaks ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF203QTV 1916076 ENCODE Processing Pipeline 7b444f6b947f48eff88a7dfa9eef3858 https://www.encodeproject.org/files/ENCFF299SRH/@@download/ENCFF299SRH.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF910TMA fastq reads ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1673500969 Bing Ren, UCSD 7ee2c3734d9e5c64de94fa2c815ecd66 SRA:SRR3653258 https://www.encodeproject.org/files/ENCFF910TMA/@@download/ENCFF910TMA.fastq.gz Illumina HiSeq 2500 /files/ENCFF879XFV/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF946FVI fastq reads ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2986592482 Bing Ren, UCSD ed458e6fdcdc9065e97f7c03ec285a82 SRA:SRR3653259 https://www.encodeproject.org/files/ENCFF946FVI/@@download/ENCFF946FVI.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF917WZJ fastq reads ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2748539242 Bing Ren, UCSD 1dbebc05331ea7e260676a3364634ac0 SRA:SRR3653256 https://www.encodeproject.org/files/ENCFF917WZJ/@@download/ENCFF917WZJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF994JBM fastq reads ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1509471454 Bing Ren, UCSD 44ef34f5565d7048cfbff71811226185 SRA:SRR3653257 https://www.encodeproject.org/files/ENCFF994JBM/@@download/ENCFF994JBM.fastq.gz Illumina HiSeq 2500 /files/ENCFF076IRY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF094DDL bam alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF917WZJ, ENCFF994JBM 3202466613 ENCODE Processing Pipeline a61b9e5f5c32802dbe7a7d150a48a301 https://www.encodeproject.org/files/ENCFF094DDL/@@download/ENCFF094DDL.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF155WAF bam alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF910TMA, ENCFF946FVI 3504611037 ENCODE Processing Pipeline 3e7821fc8630b4e83084828a11349822 https://www.encodeproject.org/files/ENCFF155WAF/@@download/ENCFF155WAF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF702BWD bed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF155WAF, ENCFF245YVK, ENCFF582LOU 1969676 ENCODE Processing Pipeline 71af679c03f8e51ad784212d1870f947 https://www.encodeproject.org/files/ENCFF702BWD/@@download/ENCFF702BWD.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF626KTQ bed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF094DDL, ENCFF155WAF, ENCFF245YVK, ENCFF582LOU 1898479 ENCODE Processing Pipeline e5f4b0a9ece4f9e6ee26b1b9a496a60e https://www.encodeproject.org/files/ENCFF626KTQ/@@download/ENCFF626KTQ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF648CEL bigBed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF702BWD 3759831 ENCODE Processing Pipeline 8ea2676de6f06454508acdaaceb8f4aa https://www.encodeproject.org/files/ENCFF648CEL/@@download/ENCFF648CEL.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF033QXE bed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF094DDL, ENCFF245YVK, ENCFF582LOU 1897541 ENCODE Processing Pipeline 31f5a03dce5454ead4eac9095fca5f0b https://www.encodeproject.org/files/ENCFF033QXE/@@download/ENCFF033QXE.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF751BFG bigBed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF033QXE 3712268 ENCODE Processing Pipeline 25ab0398ab92c4153729af4430a8553e https://www.encodeproject.org/files/ENCFF751BFG/@@download/ENCFF751BFG.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF335TZV bigBed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF626KTQ 4552427 ENCODE Processing Pipeline 9c6bb0b6ff322af16d3c270924dd0aab https://www.encodeproject.org/files/ENCFF335TZV/@@download/ENCFF335TZV.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF969NBW bigWig signal p-value ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF155WAF, ENCFF245YVK, ENCFF582LOU 993809800 ENCODE Processing Pipeline 973c7ebac5e5450ab68bf92be77ebcc9 https://www.encodeproject.org/files/ENCFF969NBW/@@download/ENCFF969NBW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF292GTP bigWig signal p-value ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF094DDL, ENCFF245YVK, ENCFF582LOU 1152740654 ENCODE Processing Pipeline 253115394b79fb3dcc7243987d7e2313 https://www.encodeproject.org/files/ENCFF292GTP/@@download/ENCFF292GTP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF221CWM bigWig signal p-value ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF094DDL, ENCFF155WAF, ENCFF245YVK, ENCFF582LOU 1362103441 ENCODE Processing Pipeline 4cda7c3463cc32d1804a75f547233d63 https://www.encodeproject.org/files/ENCFF221CWM/@@download/ENCFF221CWM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF988JLS bigWig fold change over control ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF155WAF, ENCFF245YVK, ENCFF582LOU 1183961635 ENCODE Processing Pipeline cf9d70d1e4a26002812743aa0b61b6fd https://www.encodeproject.org/files/ENCFF988JLS/@@download/ENCFF988JLS.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF010NNH bigWig fold change over control ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF094DDL, ENCFF245YVK, ENCFF582LOU 1169363348 ENCODE Processing Pipeline 4013e84f84ae3070c4208bcb118c0c64 https://www.encodeproject.org/files/ENCFF010NNH/@@download/ENCFF010NNH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF444DDZ bigWig fold change over control ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF094DDL, ENCFF155WAF, ENCFF245YVK, ENCFF582LOU 1660076680 ENCODE Processing Pipeline 2de8c63c1a42dc8c37ba7f258f0afe27 https://www.encodeproject.org/files/ENCFF444DDZ/@@download/ENCFF444DDZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF760QUP bigBed narrowPeak replicated peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF794FWH 2868880 ENCODE Processing Pipeline 92bb54f1db72ab33d03b685a2c7734bd https://www.encodeproject.org/files/ENCFF760QUP/@@download/ENCFF760QUP.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF794FWH bed narrowPeak replicated peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF033QXE, ENCFF626KTQ, ENCFF702BWD 1368807 ENCODE Processing Pipeline a6f8a22ff243866593a311cee7cb30b7 https://www.encodeproject.org/files/ENCFF794FWH/@@download/ENCFF794FWH.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF013LBD bam unfiltered alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF910TMA, ENCFF946FVI 5547868213 ENCODE Processing Pipeline a3af3b459dc5470603f81411f8a587f8 https://www.encodeproject.org/files/ENCFF013LBD/@@download/ENCFF013LBD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF666BEP bam unfiltered alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF917WZJ, ENCFF994JBM 5087427973 ENCODE Processing Pipeline 17a28bc94d77ebd98e9ae798ee5b032b https://www.encodeproject.org/files/ENCFF666BEP/@@download/ENCFF666BEP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF926IRL bam alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF910TMA, ENCFF946FVI 3503823931 ENCODE Processing Pipeline 18b42097cfdb9f556e238565452777c9 https://www.encodeproject.org/files/ENCFF926IRL/@@download/ENCFF926IRL.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF116JED bam alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF917WZJ, ENCFF994JBM 3201697256 ENCODE Processing Pipeline 6180f6f837280d9dedc3a97936bbe727 https://www.encodeproject.org/files/ENCFF116JED/@@download/ENCFF116JED.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF786XIF bed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF926IRL 1758739 ENCODE Processing Pipeline 11ba6bc1d9386d38a83c72199e9b55d3 https://www.encodeproject.org/files/ENCFF786XIF/@@download/ENCFF786XIF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF534BUA bed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF116JED, ENCFF389YBT 1097145 ENCODE Processing Pipeline fd1761e3008df5394377f6d74d8c11df https://www.encodeproject.org/files/ENCFF534BUA/@@download/ENCFF534BUA.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF622UDN bigBed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF786XIF 3353819 ENCODE Processing Pipeline f579dc64b9ccc5c9bd806932edaf699b https://www.encodeproject.org/files/ENCFF622UDN/@@download/ENCFF622UDN.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF588LRP bed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF116JED, ENCFF245OIS, ENCFF389YBT, ENCFF926IRL 2081305 ENCODE Processing Pipeline eab1a778b678d98593638296efb5fc1f https://www.encodeproject.org/files/ENCFF588LRP/@@download/ENCFF588LRP.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF832CAY bigBed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF534BUA 2227764 ENCODE Processing Pipeline 7fb8215dc70661ad9680d196e46b11fb https://www.encodeproject.org/files/ENCFF832CAY/@@download/ENCFF832CAY.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF155HFY bigBed narrowPeak peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF588LRP 4971535 ENCODE Processing Pipeline 37ecb7ae03851b0d1daa5799525aa275 https://www.encodeproject.org/files/ENCFF155HFY/@@download/ENCFF155HFY.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF783ZVH bigWig signal p-value ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF926IRL 1055012710 ENCODE Processing Pipeline ab8965e5c0059eeb3fa4bf54f0a7f1e2 https://www.encodeproject.org/files/ENCFF783ZVH/@@download/ENCFF783ZVH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF207JTO bigWig signal p-value ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF116JED, ENCFF389YBT 935754074 ENCODE Processing Pipeline 80f046653183e17e10fc938f68932400 https://www.encodeproject.org/files/ENCFF207JTO/@@download/ENCFF207JTO.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF699NHI bigWig signal p-value ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF116JED, ENCFF245OIS, ENCFF389YBT, ENCFF926IRL 1560650373 ENCODE Processing Pipeline 2166d23476933f4db5b890e911ac36ed https://www.encodeproject.org/files/ENCFF699NHI/@@download/ENCFF699NHI.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF667GVM bigWig fold change over control ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF926IRL 1218972673 ENCODE Processing Pipeline aeacfcda67ea3bd2c24e7a8111a6a8aa https://www.encodeproject.org/files/ENCFF667GVM/@@download/ENCFF667GVM.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF223YMI bigWig fold change over control ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF116JED, ENCFF389YBT 987617098 ENCODE Processing Pipeline 2a6900de7774fb1bc1791069c562416f https://www.encodeproject.org/files/ENCFF223YMI/@@download/ENCFF223YMI.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF815RWW bigWig fold change over control ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF116JED, ENCFF245OIS, ENCFF389YBT, ENCFF926IRL 1722488499 ENCODE Processing Pipeline 373721e399eab5bcb016b55643f5db7d https://www.encodeproject.org/files/ENCFF815RWW/@@download/ENCFF815RWW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF730PKF bed narrowPeak replicated peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF534BUA, ENCFF588LRP, ENCFF786XIF 1237508 ENCODE Processing Pipeline ed94af89d69f128b8f3fe8aafb1a23db https://www.encodeproject.org/files/ENCFF730PKF/@@download/ENCFF730PKF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF882QHA bigBed narrowPeak replicated peaks ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF730PKF 2580006 ENCODE Processing Pipeline 7301b995c66a4706ce976951fe4ef2c6 https://www.encodeproject.org/files/ENCFF882QHA/@@download/ENCFF882QHA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AGF fastq reads ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1418126579 Bing Ren, UCSD c2d9a8c3b65cdd794256713ee8364f2f SRA:SRR3651949 https://www.encodeproject.org/files/ENCFF002AGF/@@download/ENCFF002AGF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APV/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF002AGH fastq reads ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1712870843 Bing Ren, UCSD 0a5e9ef874dc0540b2ed6c41597fecef SRA:SRR3651948 https://www.encodeproject.org/files/ENCFF002AGH/@@download/ENCFF002AGH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APU/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF608CRU bam alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGH, ENCFF806TVZ 1221301605 ENCODE Processing Pipeline 43abf71f3ae8fe1e26bb891c47e17864 https://www.encodeproject.org/files/ENCFF608CRU/@@download/ENCFF608CRU.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF483IGD bam alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGF, ENCFF806TVZ 1158416899 ENCODE Processing Pipeline e92ad4143a4cc921d4200982ea9cf4c4 https://www.encodeproject.org/files/ENCFF483IGD/@@download/ENCFF483IGD.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF248FVN bed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF483IGD, ENCFF608CRU 1160787 ENCODE Processing Pipeline 1095752380fc1e9cc34c1041e1fd34ab https://www.encodeproject.org/files/ENCFF248FVN/@@download/ENCFF248FVN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF132AQM bed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF483IGD 1179390 ENCODE Processing Pipeline 2b523ad5c53aa52140d25f654fa0dea9 https://www.encodeproject.org/files/ENCFF132AQM/@@download/ENCFF132AQM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF867USN bed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF608CRU 1471511 ENCODE Processing Pipeline 4678f494d280154fb7748534a26cb643 https://www.encodeproject.org/files/ENCFF867USN/@@download/ENCFF867USN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF853CAM bigBed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF132AQM 2385159 ENCODE Processing Pipeline 08b30a9ba71cf0c364ac42acb54b91ee https://www.encodeproject.org/files/ENCFF853CAM/@@download/ENCFF853CAM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF445KGZ bigBed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248FVN 2908537 ENCODE Processing Pipeline 3864299b826ffa3821a987efe7b94f63 https://www.encodeproject.org/files/ENCFF445KGZ/@@download/ENCFF445KGZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF289PIX bigBed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF867USN 2981410 ENCODE Processing Pipeline 3816e001ef45a56e5ec6139a4626364d https://www.encodeproject.org/files/ENCFF289PIX/@@download/ENCFF289PIX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF556SYG bigWig signal p-value ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF483IGD 437057536 ENCODE Processing Pipeline bc95504a30ff0fe9fa54199516bbc610 https://www.encodeproject.org/files/ENCFF556SYG/@@download/ENCFF556SYG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF680MDX bigWig signal p-value ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF608CRU 485465230 ENCODE Processing Pipeline d10f7f63f92d747d7ed3255a991d3ab8 https://www.encodeproject.org/files/ENCFF680MDX/@@download/ENCFF680MDX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF627XOC bigWig signal p-value ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF483IGD, ENCFF608CRU 786934218 ENCODE Processing Pipeline b1eaea92422ad5d48a98db04e4f9ba9f https://www.encodeproject.org/files/ENCFF627XOC/@@download/ENCFF627XOC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF670CPR bigWig fold change over control ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF483IGD 533175048 ENCODE Processing Pipeline b737f0c2c4d0ced2d66cf739cdffb172 https://www.encodeproject.org/files/ENCFF670CPR/@@download/ENCFF670CPR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF268YQU bigWig fold change over control ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF608CRU 573656793 ENCODE Processing Pipeline 12c425a8c4e87fc7da0140ed9f2a157e https://www.encodeproject.org/files/ENCFF268YQU/@@download/ENCFF268YQU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF292EIC bigWig fold change over control ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF483IGD, ENCFF608CRU 877731851 ENCODE Processing Pipeline 968f3df44f707fefbeda1a4a7732c53a https://www.encodeproject.org/files/ENCFF292EIC/@@download/ENCFF292EIC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF610JQL bed narrowPeak replicated peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF132AQM, ENCFF248FVN, ENCFF867USN 802992 ENCODE Processing Pipeline 373ee364639de6a1f224e4b46f1725b2 https://www.encodeproject.org/files/ENCFF610JQL/@@download/ENCFF610JQL.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF949QFH bigBed narrowPeak replicated peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF610JQL 1749006 ENCODE Processing Pipeline 26f8b54ba7d53e21a844830dae059039 https://www.encodeproject.org/files/ENCFF949QFH/@@download/ENCFF949QFH.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF488UZU bam unfiltered alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGF, ENCFF018NEO 1569679465 ENCODE Processing Pipeline 76b1474bedff68d0a87621e30745d4fd https://www.encodeproject.org/files/ENCFF488UZU/@@download/ENCFF488UZU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF493BFE bam unfiltered alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGH, ENCFF018NEO 1846403781 ENCODE Processing Pipeline a94ea22a0b11eaba29b6f593371d51e1 https://www.encodeproject.org/files/ENCFF493BFE/@@download/ENCFF493BFE.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF055PTM bam alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGF, ENCFF018NEO 1158222474 ENCODE Processing Pipeline d8e365aa996cc4acb172752f2132e7b2 https://www.encodeproject.org/files/ENCFF055PTM/@@download/ENCFF055PTM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF610GSF bam alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGH, ENCFF018NEO 1221089419 ENCODE Processing Pipeline 880eee057959d074cc269e037f345c1c https://www.encodeproject.org/files/ENCFF610GSF/@@download/ENCFF610GSF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF488PGB bed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF610GSF 684353 ENCODE Processing Pipeline 484d66ea86f96bae3b51376d99e5cc08 https://www.encodeproject.org/files/ENCFF488PGB/@@download/ENCFF488PGB.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF266YHU bigBed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF488PGB 1385251 ENCODE Processing Pipeline 348b4213cc56d1c0440a3ec32c3d46c5 https://www.encodeproject.org/files/ENCFF266YHU/@@download/ENCFF266YHU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF335WEP bigWig signal p-value ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF610GSF 376068923 ENCODE Processing Pipeline fe94290fa194afae9e96484013f3d791 https://www.encodeproject.org/files/ENCFF335WEP/@@download/ENCFF335WEP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF479FEM bigWig fold change over control ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF610GSF 442234680 ENCODE Processing Pipeline 362591b2c16a98768c7f9c93a9dfbf20 https://www.encodeproject.org/files/ENCFF479FEM/@@download/ENCFF479FEM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF270GVU bigBed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF616RVV 2716585 ENCODE Processing Pipeline 0b7094ad5e31551f553c3bb27b39ca8e https://www.encodeproject.org/files/ENCFF270GVU/@@download/ENCFF270GVU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF603NGM bigBed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF686NZJ 2940653 ENCODE Processing Pipeline 86d91ac701ab91cb4b904e6d8fe7b3f4 https://www.encodeproject.org/files/ENCFF603NGM/@@download/ENCFF603NGM.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF616RVV bed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF055PTM, ENCFF396CVK, ENCFF506NSJ 1323138 ENCODE Processing Pipeline 5fc949e55ef28499df095ed1df35da8d https://www.encodeproject.org/files/ENCFF616RVV/@@download/ENCFF616RVV.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF686NZJ bed narrowPeak peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF055PTM, ENCFF396CVK, ENCFF506NSJ, ENCFF610GSF 1168012 ENCODE Processing Pipeline 6be55ddc4c2342527b86e4cf5795c469 https://www.encodeproject.org/files/ENCFF686NZJ/@@download/ENCFF686NZJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF079CBO bigWig signal p-value ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF055PTM, ENCFF396CVK, ENCFF506NSJ 487214550 ENCODE Processing Pipeline b844207d69bc8eec933b4890c5685286 https://www.encodeproject.org/files/ENCFF079CBO/@@download/ENCFF079CBO.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF123RCV bigWig signal p-value ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF055PTM, ENCFF396CVK, ENCFF506NSJ, ENCFF610GSF 790052650 ENCODE Processing Pipeline e6040030daef94998c0ee87ebf06f5a2 https://www.encodeproject.org/files/ENCFF123RCV/@@download/ENCFF123RCV.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF469HCQ bigWig fold change over control ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF055PTM, ENCFF396CVK, ENCFF506NSJ 565619703 ENCODE Processing Pipeline 82bcf1b31a0550f5e061f27c635b5431 https://www.encodeproject.org/files/ENCFF469HCQ/@@download/ENCFF469HCQ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF129FZH bigWig fold change over control ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF055PTM, ENCFF396CVK, ENCFF506NSJ, ENCFF610GSF 886417895 ENCODE Processing Pipeline c6ec5922e42339b22b95a56063960076 https://www.encodeproject.org/files/ENCFF129FZH/@@download/ENCFF129FZH.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF794BNQ bigBed narrowPeak replicated peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF933KMD 1538876 ENCODE Processing Pipeline f6d8bad60824662eb82c1b32d964bfd8 https://www.encodeproject.org/files/ENCFF794BNQ/@@download/ENCFF794BNQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF933KMD bed narrowPeak replicated peaks ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF488PGB, ENCFF616RVV, ENCFF686NZJ 703092 ENCODE Processing Pipeline 8141215294cb72f25077725e6ee2d82f https://www.encodeproject.org/files/ENCFF933KMD/@@download/ENCFF933KMD.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF412SLM bam alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF596BNN, ENCFF806TVZ 1730625659 ENCODE Processing Pipeline 40f57885c0d67ac8bf44ec54c7c7837f https://www.encodeproject.org/files/ENCFF412SLM/@@download/ENCFF412SLM.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF596BNN fastq reads ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2248705615 Bing Ren, UCSD 784197b1d14ff1ead6e44eae9a7d81ae SRA:SRR3653097 https://www.encodeproject.org/files/ENCFF596BNN/@@download/ENCFF596BNN.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released mild to moderate bottlenecking, inconsistent platforms ENCFF053SSJ fastq reads ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2310494204 Bing Ren, UCSD 65eed8eb9166b9634e1b800b278015e2 SRA:SRR3653096 https://www.encodeproject.org/files/ENCFF053SSJ/@@download/ENCFF053SSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released mild to moderate bottlenecking, inconsistent platforms ENCFF435WKO bam alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF053SSJ, ENCFF806TVZ 1687289447 ENCODE Processing Pipeline 67f52c1506f6b303088a3918dbd228f6 https://www.encodeproject.org/files/ENCFF435WKO/@@download/ENCFF435WKO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF547VEN bed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF435WKO 548138 ENCODE Processing Pipeline 4f8791b4f28ffc9294e14dc57ec8ab87 https://www.encodeproject.org/files/ENCFF547VEN/@@download/ENCFF547VEN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF765UUL bigBed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF887JUC 1888547 ENCODE Processing Pipeline 0b2d09d100483bd08d61ca8ce38f5dff https://www.encodeproject.org/files/ENCFF765UUL/@@download/ENCFF765UUL.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF802IRN bed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF366PSQ, ENCFF412SLM 535963 ENCODE Processing Pipeline 174d4a7a91f277ea28db3836947b41b9 https://www.encodeproject.org/files/ENCFF802IRN/@@download/ENCFF802IRN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF166HXA bigBed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF802IRN 1743182 ENCODE Processing Pipeline 9b0ea237d93e10531bc3cf8aac7bbe63 https://www.encodeproject.org/files/ENCFF166HXA/@@download/ENCFF166HXA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF441OUE bigBed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF547VEN 1777661 ENCODE Processing Pipeline f480c2ac36c6b5b00cd724c1ee9a82f7 https://www.encodeproject.org/files/ENCFF441OUE/@@download/ENCFF441OUE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF887JUC bed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF412SLM, ENCFF435WKO 603564 ENCODE Processing Pipeline e14997e4f73cec006e86529df3dd8313 https://www.encodeproject.org/files/ENCFF887JUC/@@download/ENCFF887JUC.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF443ICK bigWig signal p-value ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF366PSQ, ENCFF412SLM 433376859 ENCODE Processing Pipeline 70050bc7bf55ac9f7b3ce58f4605ad2b https://www.encodeproject.org/files/ENCFF443ICK/@@download/ENCFF443ICK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF390UJP bigWig signal p-value ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF435WKO 457583059 ENCODE Processing Pipeline e53b3be24c3ac838decfe4159b0c1638 https://www.encodeproject.org/files/ENCFF390UJP/@@download/ENCFF390UJP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF425KAO bigWig signal p-value ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF412SLM, ENCFF435WKO 1039068121 ENCODE Processing Pipeline 7788dc172f4ffe62c75859914fbb22ee https://www.encodeproject.org/files/ENCFF425KAO/@@download/ENCFF425KAO.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF389PES bigWig fold change over control ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF366PSQ, ENCFF412SLM 540024712 ENCODE Processing Pipeline 45a0c8d830e83187052ee2d2a7e4ad99 https://www.encodeproject.org/files/ENCFF389PES/@@download/ENCFF389PES.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF083KWV bigWig fold change over control ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF435WKO 531986885 ENCODE Processing Pipeline 7e95259fae7377e475c8933f30db8de8 https://www.encodeproject.org/files/ENCFF083KWV/@@download/ENCFF083KWV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF308DPL bigWig fold change over control ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF412SLM, ENCFF435WKO 1036600307 ENCODE Processing Pipeline 2ca68ffb6aae45a00062ea28675a4852 https://www.encodeproject.org/files/ENCFF308DPL/@@download/ENCFF308DPL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF286EGT bed narrowPeak replicated peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF547VEN, ENCFF802IRN, ENCFF887JUC 650218 ENCODE Processing Pipeline 19e1ccf05db8bc422e58ba10bf58dfd8 https://www.encodeproject.org/files/ENCFF286EGT/@@download/ENCFF286EGT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF170IOM bigBed narrowPeak replicated peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF286EGT 1570420 ENCODE Processing Pipeline d4ec4817447233a756835e609a5d1895 https://www.encodeproject.org/files/ENCFF170IOM/@@download/ENCFF170IOM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF089DAZ bam unfiltered alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF053SSJ 2583491321 ENCODE Processing Pipeline e90163bd4bba17c8aaae033cd066c7ca https://www.encodeproject.org/files/ENCFF089DAZ/@@download/ENCFF089DAZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF273MPF bam unfiltered alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF596BNN 2580345369 ENCODE Processing Pipeline 78bd5231ef122b24b7a7e80d31424993 https://www.encodeproject.org/files/ENCFF273MPF/@@download/ENCFF273MPF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF119USK bam alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF596BNN 1730188053 ENCODE Processing Pipeline bb669b8787d16d6e8d5a2c66c736530e https://www.encodeproject.org/files/ENCFF119USK/@@download/ENCFF119USK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF920CYN bam alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF053SSJ 1686922579 ENCODE Processing Pipeline 119d0192b1f14319a55f15fee6384552 https://www.encodeproject.org/files/ENCFF920CYN/@@download/ENCFF920CYN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF735ZTZ bed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF119USK, ENCFF956XFI 549283 ENCODE Processing Pipeline 56ab811221ff44752723b62b62757daf https://www.encodeproject.org/files/ENCFF735ZTZ/@@download/ENCFF735ZTZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF536ONO bed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF837CRH, ENCFF920CYN 554869 ENCODE Processing Pipeline 35a9a815c82076e89491a216e63223d4 https://www.encodeproject.org/files/ENCFF536ONO/@@download/ENCFF536ONO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF389OHZ bed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF119USK, ENCFF837CRH, ENCFF920CYN, ENCFF956XFI 642101 ENCODE Processing Pipeline 6a637051aecff4cd191856dfcfca638f https://www.encodeproject.org/files/ENCFF389OHZ/@@download/ENCFF389OHZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF542WEZ bigBed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF735ZTZ 1768455 ENCODE Processing Pipeline cc3aafe9b84708ccdf4132358608e6a1 https://www.encodeproject.org/files/ENCFF542WEZ/@@download/ENCFF542WEZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF971KVR bigBed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF536ONO 1785313 ENCODE Processing Pipeline 207fc3b90a4410bdf028a09a86ae2cff https://www.encodeproject.org/files/ENCFF971KVR/@@download/ENCFF971KVR.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF553RVF bigBed narrowPeak peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF389OHZ 1960778 ENCODE Processing Pipeline cc8c8f1643fcc69f442ae01ad65ecbac https://www.encodeproject.org/files/ENCFF553RVF/@@download/ENCFF553RVF.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF269TLE bigWig signal p-value ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF119USK, ENCFF956XFI 570494214 ENCODE Processing Pipeline e3a6afffa8117023c18891c846f4b107 https://www.encodeproject.org/files/ENCFF269TLE/@@download/ENCFF269TLE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF752ZGP bigWig signal p-value ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF837CRH, ENCFF920CYN 601001008 ENCODE Processing Pipeline 507b5033fe6a36b3109804051e365ba8 https://www.encodeproject.org/files/ENCFF752ZGP/@@download/ENCFF752ZGP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF501TSK bigWig signal p-value ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF119USK, ENCFF837CRH, ENCFF920CYN, ENCFF956XFI 1031896081 ENCODE Processing Pipeline 9ef7c629fcf56671964093dc05c1ae49 https://www.encodeproject.org/files/ENCFF501TSK/@@download/ENCFF501TSK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF744ERG bigWig fold change over control ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF119USK, ENCFF956XFI 623594844 ENCODE Processing Pipeline 783da080a81187eeb6c2f69b4885a51e https://www.encodeproject.org/files/ENCFF744ERG/@@download/ENCFF744ERG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF145RKE bigWig fold change over control ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF837CRH, ENCFF920CYN 579553305 ENCODE Processing Pipeline a6e177ee62b6b155f6cf03d4af65a7a2 https://www.encodeproject.org/files/ENCFF145RKE/@@download/ENCFF145RKE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF314QNW bigWig fold change over control ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF119USK, ENCFF837CRH, ENCFF920CYN, ENCFF956XFI 1228065976 ENCODE Processing Pipeline ea7eccea411ed58550bf18c13f7df15d https://www.encodeproject.org/files/ENCFF314QNW/@@download/ENCFF314QNW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF008XLS bed narrowPeak replicated peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF389OHZ, ENCFF536ONO, ENCFF735ZTZ 662224 ENCODE Processing Pipeline 32985ed9147e0461868f99e3855a7481 https://www.encodeproject.org/files/ENCFF008XLS/@@download/ENCFF008XLS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF938DCM bigBed narrowPeak replicated peaks ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF008XLS 1579407 ENCODE Processing Pipeline c85ed80eb13a82788f6fd766d866ca63 https://www.encodeproject.org/files/ENCFF938DCM/@@download/ENCFF938DCM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF816WGW fastq reads ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1631122109 Bing Ren, UCSD 3b257b6b316f37d252f1c219c275b0c1 SRA:SRR3652204 https://www.encodeproject.org/files/ENCFF816WGW/@@download/ENCFF816WGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms ENCFF293USS fastq reads ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2144043006 Bing Ren, UCSD 363759c8fddec8bd9fda4a9991e7ac8b SRA:SRR3652203 https://www.encodeproject.org/files/ENCFF293USS/@@download/ENCFF293USS.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms ENCFF393XUN bam alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF293USS, ENCFF806TVZ 1817560287 ENCODE Processing Pipeline bbf7600ee9584565c5f68efb89aef397 https://www.encodeproject.org/files/ENCFF393XUN/@@download/ENCFF393XUN.bam mm10-minimal archived inconsistent platforms ENCFF294PTW bam alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF816WGW 1407886943 ENCODE Processing Pipeline 880e30ef1bb0bab902226d78955411d0 https://www.encodeproject.org/files/ENCFF294PTW/@@download/ENCFF294PTW.bam mm10-minimal archived inconsistent platforms ENCFF721BDD bed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF294PTW, ENCFF393XUN, ENCFF711NEU 651300 ENCODE Processing Pipeline 1df1ccb61031e7413369225aa20c5315 https://www.encodeproject.org/files/ENCFF721BDD/@@download/ENCFF721BDD.bed.gz mm10-minimal archived inconsistent platforms ENCFF130RKD bigBed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF006HPO 1971524 ENCODE Processing Pipeline d589581370faa1815e564e78421010e6 https://www.encodeproject.org/files/ENCFF130RKD/@@download/ENCFF130RKD.bigBed mm10-minimal archived inconsistent platforms ENCFF006HPO bed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF393XUN 602802 ENCODE Processing Pipeline 854861f1c456e5f5870305bac685d94a https://www.encodeproject.org/files/ENCFF006HPO/@@download/ENCFF006HPO.bed.gz mm10-minimal archived inconsistent platforms ENCFF832LRB bed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF294PTW, ENCFF711NEU 488049 ENCODE Processing Pipeline 4199f98c818fb4432bfc48d4bef44f37 https://www.encodeproject.org/files/ENCFF832LRB/@@download/ENCFF832LRB.bed.gz mm10-minimal archived inconsistent platforms ENCFF073JKU bigBed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF721BDD 2113908 ENCODE Processing Pipeline c5158f0ed95b9055b335e2370becf275 https://www.encodeproject.org/files/ENCFF073JKU/@@download/ENCFF073JKU.bigBed mm10-minimal archived inconsistent platforms ENCFF074ULK bigBed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF832LRB 1437171 ENCODE Processing Pipeline dbbe77d7d98de4fec901e544b5aa655b https://www.encodeproject.org/files/ENCFF074ULK/@@download/ENCFF074ULK.bigBed mm10-minimal archived inconsistent platforms ENCFF454STQ bigWig signal p-value ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF393XUN 555185931 ENCODE Processing Pipeline e0a5545f3bedb988b050319089aa1f8a https://www.encodeproject.org/files/ENCFF454STQ/@@download/ENCFF454STQ.bigWig mm10-minimal archived inconsistent platforms ENCFF422TQC bigWig signal p-value ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF294PTW, ENCFF711NEU 467481768 ENCODE Processing Pipeline f8e2bee68c4902ca15cde9e70e8bc4e9 https://www.encodeproject.org/files/ENCFF422TQC/@@download/ENCFF422TQC.bigWig mm10-minimal archived inconsistent platforms ENCFF828YWI bigWig signal p-value ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF294PTW, ENCFF393XUN, ENCFF711NEU 819547394 ENCODE Processing Pipeline 9afd8f20da24eb15a7269e13f18c7f31 https://www.encodeproject.org/files/ENCFF828YWI/@@download/ENCFF828YWI.bigWig mm10-minimal archived inconsistent platforms ENCFF162MDJ bigWig fold change over control ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF393XUN 633222883 ENCODE Processing Pipeline f29cbe62994886c8945177553be687a3 https://www.encodeproject.org/files/ENCFF162MDJ/@@download/ENCFF162MDJ.bigWig mm10-minimal archived inconsistent platforms ENCFF303AEG bigWig fold change over control ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF294PTW, ENCFF711NEU 540474519 ENCODE Processing Pipeline a66cd3e50a4c63d218fe1c2d92ff7fc3 https://www.encodeproject.org/files/ENCFF303AEG/@@download/ENCFF303AEG.bigWig mm10-minimal archived inconsistent platforms ENCFF777CSG bigWig fold change over control ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF294PTW, ENCFF393XUN, ENCFF711NEU 1108109197 ENCODE Processing Pipeline f43f82b743981a625ae7984022b1af1c https://www.encodeproject.org/files/ENCFF777CSG/@@download/ENCFF777CSG.bigWig mm10-minimal archived inconsistent platforms ENCFF461LUY bed narrowPeak replicated peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF006HPO, ENCFF721BDD, ENCFF832LRB 453762 ENCODE Processing Pipeline d28c1e4eee7fa766cb9a5fb084d27760 https://www.encodeproject.org/files/ENCFF461LUY/@@download/ENCFF461LUY.bed.gz mm10-minimal archived inconsistent platforms ENCFF406ZAQ bigBed narrowPeak replicated peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF461LUY 1245024 ENCODE Processing Pipeline 4bfd48a2a9796c8d20726b6a7781b47a https://www.encodeproject.org/files/ENCFF406ZAQ/@@download/ENCFF406ZAQ.bigBed mm10-minimal archived inconsistent platforms ENCFF313MTU bam unfiltered alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF816WGW 2015201345 ENCODE Processing Pipeline d2aa850a779f635403b90ac11e17ea91 https://www.encodeproject.org/files/ENCFF313MTU/@@download/ENCFF313MTU.bam mm10 released inconsistent platforms ENCFF709ZUK bam unfiltered alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF293USS 2603771019 ENCODE Processing Pipeline beadb727be9dd1a50c52e0eae69a1491 https://www.encodeproject.org/files/ENCFF709ZUK/@@download/ENCFF709ZUK.bam mm10 released inconsistent platforms ENCFF972UAI bam alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF816WGW 1407467347 ENCODE Processing Pipeline 051a7db3775ffbb81dda1d1248e9f624 https://www.encodeproject.org/files/ENCFF972UAI/@@download/ENCFF972UAI.bam mm10 released inconsistent platforms ENCFF517SID bam alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF293USS 1817126771 ENCODE Processing Pipeline 088d69d425461d49ce2a1f9f4d277aab https://www.encodeproject.org/files/ENCFF517SID/@@download/ENCFF517SID.bam mm10 released inconsistent platforms ENCFF228WJA bed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF517SID, ENCFF580YCN 662893 ENCODE Processing Pipeline 7b2379ce8e3eede732e8029f190b16ae https://www.encodeproject.org/files/ENCFF228WJA/@@download/ENCFF228WJA.bed.gz mm10 released inconsistent platforms ENCFF523UGL bed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF972UAI 530694 ENCODE Processing Pipeline 322a65e1d829a2719d61d508f5345125 https://www.encodeproject.org/files/ENCFF523UGL/@@download/ENCFF523UGL.bed.gz mm10 released inconsistent platforms ENCFF149OJA bed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF517SID, ENCFF580YCN, ENCFF972UAI 654468 ENCODE Processing Pipeline aa729c9f46756024ae6fad819940bca5 https://www.encodeproject.org/files/ENCFF149OJA/@@download/ENCFF149OJA.bed.gz mm10 released inconsistent platforms ENCFF376NHN bigBed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF228WJA 2153374 ENCODE Processing Pipeline 950c55cd996927fe359bf3777e8b01ac https://www.encodeproject.org/files/ENCFF376NHN/@@download/ENCFF376NHN.bigBed mm10 released inconsistent platforms ENCFF717MHE bigBed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF523UGL 1560671 ENCODE Processing Pipeline 2d62bbc330b1829dd2721a07d3ea0fdc https://www.encodeproject.org/files/ENCFF717MHE/@@download/ENCFF717MHE.bigBed mm10 released inconsistent platforms ENCFF131CMY bigBed narrowPeak peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149OJA 2109367 ENCODE Processing Pipeline 3673f2c70318ea11a11fa2114701f4fb https://www.encodeproject.org/files/ENCFF131CMY/@@download/ENCFF131CMY.bigBed mm10 released inconsistent platforms ENCFF371KDG bigWig signal p-value ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF517SID, ENCFF580YCN 937073514 ENCODE Processing Pipeline 0ef974cf7216f204080ed1f29621a8b9 https://www.encodeproject.org/files/ENCFF371KDG/@@download/ENCFF371KDG.bigWig mm10 released inconsistent platforms ENCFF281HDQ bigWig signal p-value ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF972UAI 864206582 ENCODE Processing Pipeline e5fb9aa41f07e49759a3293f8c52acb8 https://www.encodeproject.org/files/ENCFF281HDQ/@@download/ENCFF281HDQ.bigWig mm10 released inconsistent platforms ENCFF522ZEJ bigWig signal p-value ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF517SID, ENCFF580YCN, ENCFF972UAI 1268556298 ENCODE Processing Pipeline 7ff5994a5368c558f62c33886d1551a9 https://www.encodeproject.org/files/ENCFF522ZEJ/@@download/ENCFF522ZEJ.bigWig mm10 released inconsistent platforms ENCFF219PWH bigWig fold change over control ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF517SID, ENCFF580YCN 939647732 ENCODE Processing Pipeline fea3a95644291078126d695898eceefa https://www.encodeproject.org/files/ENCFF219PWH/@@download/ENCFF219PWH.bigWig mm10 released inconsistent platforms ENCFF241VWA bigWig fold change over control ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF972UAI 832021815 ENCODE Processing Pipeline 8547fd726fd3bec931bbda307abe9f14 https://www.encodeproject.org/files/ENCFF241VWA/@@download/ENCFF241VWA.bigWig mm10 released inconsistent platforms ENCFF419ZKE bigWig fold change over control ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF517SID, ENCFF580YCN, ENCFF972UAI 1246166157 ENCODE Processing Pipeline d9ce856f4f8989fe87ce50ba40d5b72b https://www.encodeproject.org/files/ENCFF419ZKE/@@download/ENCFF419ZKE.bigWig mm10 released inconsistent platforms ENCFF781VAZ bed narrowPeak replicated peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149OJA, ENCFF228WJA, ENCFF523UGL 479429 ENCODE Processing Pipeline 2e214e660989bfdf9cfab3edd1991370 https://www.encodeproject.org/files/ENCFF781VAZ/@@download/ENCFF781VAZ.bed.gz mm10 released inconsistent platforms ENCFF136GEO bigBed narrowPeak replicated peaks ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF781VAZ 1278904 ENCODE Processing Pipeline a8ddbd974d3255b10822eeb182edd2d7 https://www.encodeproject.org/files/ENCFF136GEO/@@download/ENCFF136GEO.bigBed mm10 released inconsistent platforms ENCFF002ERY fastq reads ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 835717145 Bing Ren, UCSD fd8643de71f504aa21dc3be5e024201c SRA:SRR3652269 https://www.encodeproject.org/files/ENCFF002ERY/@@download/ENCFF002ERY.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXR/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESB fastq reads ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 849113341 Bing Ren, UCSD 61ac38f878b3c60be0e1088834d28b3d SRA:SRR3652271 https://www.encodeproject.org/files/ENCFF002ESB/@@download/ENCFF002ESB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXT/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF658EQW fastq reads ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 927378386 Bing Ren, UCSD fb213700461fe7e7ce42d4370c469031 SRA:SRR3652272 https://www.encodeproject.org/files/ENCFF658EQW/@@download/ENCFF658EQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXT/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF594ULG fastq reads ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 933694764 Bing Ren, UCSD 382928d5fd20ea6bcd33bc8f4abfc833 SRA:SRR3652270 https://www.encodeproject.org/files/ENCFF594ULG/@@download/ENCFF594ULG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXR/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF821XYT bam alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESB, ENCFF658EQW, ENCFF806TVZ 1568398105 ENCODE Processing Pipeline 3f2278a0e0c923777bce3fdad426fab3 https://www.encodeproject.org/files/ENCFF821XYT/@@download/ENCFF821XYT.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF635QTD bam alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ERY, ENCFF594ULG, ENCFF806TVZ 1585930662 ENCODE Processing Pipeline d33554cfc790bce123df24ff6fe4b777 https://www.encodeproject.org/files/ENCFF635QTD/@@download/ENCFF635QTD.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF687TDC bed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF635QTD, ENCFF720BSQ 821533 ENCODE Processing Pipeline 373a130230537db4f24c8e9ff54f2f3f https://www.encodeproject.org/files/ENCFF687TDC/@@download/ENCFF687TDC.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF991WAA bigWig signal p-value ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF635QTD, ENCFF720BSQ 621805746 ENCODE Processing Pipeline e2c95d7edad9bcca7bc9f416d22623d0 https://www.encodeproject.org/files/ENCFF991WAA/@@download/ENCFF991WAA.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF688KDW bed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF635QTD, ENCFF720BSQ, ENCFF821XYT 539483 ENCODE Processing Pipeline 4efb02a73e6adc32a77fc84561b004ea https://www.encodeproject.org/files/ENCFF688KDW/@@download/ENCFF688KDW.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF757FBN bigWig signal p-value ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF821XYT 672171920 ENCODE Processing Pipeline 7470dbcaf87716c7eb9ff11a07d522f1 https://www.encodeproject.org/files/ENCFF757FBN/@@download/ENCFF757FBN.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF222GAF bigBed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF687TDC 1948749 ENCODE Processing Pipeline 6d8f743ba509f9a75cee445964bb1fff https://www.encodeproject.org/files/ENCFF222GAF/@@download/ENCFF222GAF.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF950DIC bigBed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF688KDW 1499612 ENCODE Processing Pipeline b79c85f44040d190089e4ef753237e76 https://www.encodeproject.org/files/ENCFF950DIC/@@download/ENCFF950DIC.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF468WGU bed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF821XYT 845631 ENCODE Processing Pipeline aa6579caa7d03f817e1a30a2a732da8d https://www.encodeproject.org/files/ENCFF468WGU/@@download/ENCFF468WGU.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF090CMV bigBed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF468WGU 2044883 ENCODE Processing Pipeline 4e0fdeaac91c5d2efccfc7b87b916ab6 https://www.encodeproject.org/files/ENCFF090CMV/@@download/ENCFF090CMV.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF480IZR bigWig signal p-value ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF635QTD, ENCFF720BSQ, ENCFF821XYT 856578152 ENCODE Processing Pipeline 5ca38ae340abfe1bc8f90cde650faa83 https://www.encodeproject.org/files/ENCFF480IZR/@@download/ENCFF480IZR.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF093BZB bigWig fold change over control ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF635QTD, ENCFF720BSQ 719103907 ENCODE Processing Pipeline b0a834802995290f65ecdbed91c28ea6 https://www.encodeproject.org/files/ENCFF093BZB/@@download/ENCFF093BZB.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF913ZVA bigWig fold change over control ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF821XYT 725121242 ENCODE Processing Pipeline 7aa00893fcfc29ba12ab13e81b4a319a https://www.encodeproject.org/files/ENCFF913ZVA/@@download/ENCFF913ZVA.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF051EYX bigWig fold change over control ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF635QTD, ENCFF720BSQ, ENCFF821XYT 1068919798 ENCODE Processing Pipeline 2f55fa7682e6b857b2154c6c6fcf2078 https://www.encodeproject.org/files/ENCFF051EYX/@@download/ENCFF051EYX.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF296GQF bigBed narrowPeak replicated peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF242HFP 1004899 ENCODE Processing Pipeline 1df43224fe7c8fdee41227047384c5fa https://www.encodeproject.org/files/ENCFF296GQF/@@download/ENCFF296GQF.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF242HFP bed narrowPeak replicated peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF468WGU, ENCFF687TDC, ENCFF688KDW 420267 ENCODE Processing Pipeline 190959265ca61300142d1ba3c85fb2cc https://www.encodeproject.org/files/ENCFF242HFP/@@download/ENCFF242HFP.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF201ECH bam unfiltered alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESB, ENCFF018NEO, ENCFF658EQW 2048660381 ENCODE Processing Pipeline 5e348cb60b4e67208d01958dcf6513a7 https://www.encodeproject.org/files/ENCFF201ECH/@@download/ENCFF201ECH.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF135LSK bam unfiltered alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ERY, ENCFF018NEO, ENCFF594ULG 2039162459 ENCODE Processing Pipeline bde6efc2a40aa3fb108c9947d829c8bb https://www.encodeproject.org/files/ENCFF135LSK/@@download/ENCFF135LSK.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF417IOF bam alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ERY, ENCFF018NEO, ENCFF594ULG 1365574155 ENCODE Processing Pipeline 4a0cfbe799b16facfd2cad0332205537 https://www.encodeproject.org/files/ENCFF417IOF/@@download/ENCFF417IOF.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF755WEB bam alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESB, ENCFF018NEO, ENCFF658EQW 1350440157 ENCODE Processing Pipeline 64ef28f43b04feb601eb5ccc29a08729 https://www.encodeproject.org/files/ENCFF755WEB/@@download/ENCFF755WEB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF595NER bed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF417IOF, ENCFF568KLX, ENCFF631VBQ 805084 ENCODE Processing Pipeline a478150d11cb799370c164cb208e10e9 https://www.encodeproject.org/files/ENCFF595NER/@@download/ENCFF595NER.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF556ISB bed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF755WEB 427628 ENCODE Processing Pipeline e38c53303af3fef6c775a774b4a8fe33 https://www.encodeproject.org/files/ENCFF556ISB/@@download/ENCFF556ISB.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF358WFZ bed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF417IOF, ENCFF568KLX, ENCFF631VBQ, ENCFF755WEB 558267 ENCODE Processing Pipeline 1260b5b8f0b5dec1f15bf6f9714587e9 https://www.encodeproject.org/files/ENCFF358WFZ/@@download/ENCFF358WFZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF728LXY bigBed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF595NER 1915035 ENCODE Processing Pipeline a07c54d7543cb03e44ebb84d3c0dfe85 https://www.encodeproject.org/files/ENCFF728LXY/@@download/ENCFF728LXY.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF675FDI bigBed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF556ISB 1042842 ENCODE Processing Pipeline 41a517fbe9b59451178f99f0e94b2b32 https://www.encodeproject.org/files/ENCFF675FDI/@@download/ENCFF675FDI.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF162YAZ bigBed narrowPeak peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF358WFZ 1552699 ENCODE Processing Pipeline 9e1747936b7d68462820e5949699954e https://www.encodeproject.org/files/ENCFF162YAZ/@@download/ENCFF162YAZ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF627QRA bigWig signal p-value ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF417IOF, ENCFF568KLX, ENCFF631VBQ 591378143 ENCODE Processing Pipeline f49d11a21ef57866bbe6e7bd984006a2 https://www.encodeproject.org/files/ENCFF627QRA/@@download/ENCFF627QRA.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF075NVI bigWig signal p-value ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF755WEB 474812000 ENCODE Processing Pipeline 0d2f65dc3b2ef2875ee0f8078502c0e5 https://www.encodeproject.org/files/ENCFF075NVI/@@download/ENCFF075NVI.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF872NCQ bigWig signal p-value ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF417IOF, ENCFF568KLX, ENCFF631VBQ, ENCFF755WEB 861437109 ENCODE Processing Pipeline 0bae39556b9db5f3754904d51561abbb https://www.encodeproject.org/files/ENCFF872NCQ/@@download/ENCFF872NCQ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF919GNE bigWig fold change over control ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF417IOF, ENCFF568KLX, ENCFF631VBQ 710078791 ENCODE Processing Pipeline 7b405b74ebf344d1b9f24a93285365ee https://www.encodeproject.org/files/ENCFF919GNE/@@download/ENCFF919GNE.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF965LHE bigWig fold change over control ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF755WEB 537748135 ENCODE Processing Pipeline b779348fe90fa2660dbecfb74d355812 https://www.encodeproject.org/files/ENCFF965LHE/@@download/ENCFF965LHE.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF893IAL bigWig fold change over control ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF417IOF, ENCFF568KLX, ENCFF631VBQ, ENCFF755WEB 1059933325 ENCODE Processing Pipeline c9165b0fc907be7e97e7563da71f876c https://www.encodeproject.org/files/ENCFF893IAL/@@download/ENCFF893IAL.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF937XLK bed narrowPeak replicated peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF358WFZ, ENCFF556ISB, ENCFF595NER 386362 ENCODE Processing Pipeline 6586e93a4276436f05355957041abc47 https://www.encodeproject.org/files/ENCFF937XLK/@@download/ENCFF937XLK.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF096TTR bigBed narrowPeak replicated peaks ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF937XLK 923577 ENCODE Processing Pipeline 19ccd5eb1c5474012f3624ecd3e2877e https://www.encodeproject.org/files/ENCFF096TTR/@@download/ENCFF096TTR.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF329PLP fastq reads ENCSR281FZS ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1132875017 Richard Myers, HAIB 19fa51584a65dac909f03a3f15ffd7e1 SRA:SRR5111360 https://www.encodeproject.org/files/ENCFF329PLP/@@download/ENCFF329PLP.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF080JZB bam unfiltered alignments ENCSR281FZS ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF329PLP 1261293645 ENCODE Processing Pipeline da0e439ddf7a1071c4324739206cc3a7 https://www.encodeproject.org/files/ENCFF080JZB/@@download/ENCFF080JZB.bam mm10 released insufficient read depth for broad peaks control ENCFF132KBH bam alignments ENCSR281FZS ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF329PLP 967295160 ENCODE Processing Pipeline 558e9487eb6e07894129021ba52a5818 https://www.encodeproject.org/files/ENCFF132KBH/@@download/ENCFF132KBH.bam mm10 released insufficient read depth for broad peaks control ENCFF314WCC fastq reads ENCSR431KAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1221483016 Richard Myers, HAIB 1019189b2fa48b49f28f6277082279a8 SRA:SRR5111568 https://www.encodeproject.org/files/ENCFF314WCC/@@download/ENCFF314WCC.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF156HWT bam unfiltered alignments ENCSR431KAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF314WCC 1339226632 ENCODE Processing Pipeline 8acc4b5e0a596519e2d98704718eabc3 https://www.encodeproject.org/files/ENCFF156HWT/@@download/ENCFF156HWT.bam mm10 released insufficient read depth for broad peaks control ENCFF554RMZ bam alignments ENCSR431KAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF314WCC 1005392706 ENCODE Processing Pipeline 1c111635f2d1f09b462ad671afb02c14 https://www.encodeproject.org/files/ENCFF554RMZ/@@download/ENCFF554RMZ.bam mm10 released insufficient read depth for broad peaks control ENCFF002BXG fastq reads ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1354114398 Bing Ren, UCSD 254f6b88d410047dc715ca327e5f29be SRA:SRR3653324 https://www.encodeproject.org/files/ENCFF002BXG/@@download/ENCFF002BXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXS/ released low read length, mild to moderate bottlenecking ENCFF002BXE fastq reads ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1193977487 Bing Ren, UCSD ed81ab8a9f3a79bb0d4db3078dd981f9 SRA:SRR3653323 https://www.encodeproject.org/files/ENCFF002BXE/@@download/ENCFF002BXE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXU/ released low read length, mild to moderate bottlenecking ENCFF631TWW bam alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXE, ENCFF806TVZ 899399447 ENCODE Processing Pipeline 48ebf1deaa3880f9cf75626c96b2c9e1 https://www.encodeproject.org/files/ENCFF631TWW/@@download/ENCFF631TWW.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF585DGH bam alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXG, ENCFF806TVZ 1049215830 ENCODE Processing Pipeline 798a673122e8a3f9af62924bd28a1ae4 https://www.encodeproject.org/files/ENCFF585DGH/@@download/ENCFF585DGH.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF060LEY bigWig signal p-value ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF585DGH 592414474 ENCODE Processing Pipeline 4af06e0897df611155e47128e8e314a8 https://www.encodeproject.org/files/ENCFF060LEY/@@download/ENCFF060LEY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF842MKZ bed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF532IQU, ENCFF540VMM, ENCFF631TWW 626507 ENCODE Processing Pipeline c2b0681072a77a84414331a5da2282e4 https://www.encodeproject.org/files/ENCFF842MKZ/@@download/ENCFF842MKZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF582LMK bed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF532IQU, ENCFF540VMM, ENCFF585DGH, ENCFF631TWW 666537 ENCODE Processing Pipeline 4e125d0cc0a1f0702387cbe14a55fbe0 https://www.encodeproject.org/files/ENCFF582LMK/@@download/ENCFF582LMK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF414OLQ bigBed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF582LMK 2019584 ENCODE Processing Pipeline ae8ca178cc8f771806014a7367537f02 https://www.encodeproject.org/files/ENCFF414OLQ/@@download/ENCFF414OLQ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF486JUS bed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF585DGH 652562 ENCODE Processing Pipeline a9c47fca59d3bf7cab41b805ee147af6 https://www.encodeproject.org/files/ENCFF486JUS/@@download/ENCFF486JUS.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF345JJY bigBed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF486JUS 2034736 ENCODE Processing Pipeline 31f75d8c9f087b02d10ff67da0e46e0d https://www.encodeproject.org/files/ENCFF345JJY/@@download/ENCFF345JJY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF290KWK bigBed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF842MKZ 1968464 ENCODE Processing Pipeline b593ee9f82f507f63c8d3d397c8b2254 https://www.encodeproject.org/files/ENCFF290KWK/@@download/ENCFF290KWK.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF768GDJ bigWig signal p-value ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF532IQU, ENCFF540VMM, ENCFF585DGH, ENCFF631TWW 704098240 ENCODE Processing Pipeline 2752cd4e8edddb6a3b33a389cfc48456 https://www.encodeproject.org/files/ENCFF768GDJ/@@download/ENCFF768GDJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF105FJK bigWig fold change over control ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF532IQU, ENCFF540VMM, ENCFF631TWW 413774310 ENCODE Processing Pipeline bb5ee5171c83f9ec2d55773b728b0efe https://www.encodeproject.org/files/ENCFF105FJK/@@download/ENCFF105FJK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF854HTF bigWig fold change over control ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF585DGH 496186453 ENCODE Processing Pipeline 1196107ee127ee66b38cc4ad65957ba2 https://www.encodeproject.org/files/ENCFF854HTF/@@download/ENCFF854HTF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF542GTG bigWig signal p-value ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF532IQU, ENCFF540VMM, ENCFF631TWW 502023457 ENCODE Processing Pipeline cbb1ef8df6f080b689878a4908bf0dac https://www.encodeproject.org/files/ENCFF542GTG/@@download/ENCFF542GTG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF646HZB bed narrowPeak replicated peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF486JUS, ENCFF582LMK, ENCFF842MKZ 776697 ENCODE Processing Pipeline 4fa2528c8a721270fa4e0453c31d2860 https://www.encodeproject.org/files/ENCFF646HZB/@@download/ENCFF646HZB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF888YOA bigWig fold change over control ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF532IQU, ENCFF540VMM, ENCFF585DGH, ENCFF631TWW 690530820 ENCODE Processing Pipeline 3e20dbfba056ae7f43290e1555e7b32b https://www.encodeproject.org/files/ENCFF888YOA/@@download/ENCFF888YOA.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF263NSE bigBed narrowPeak replicated peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF646HZB 1785089 ENCODE Processing Pipeline 95b88ae148879828ddf4142d2396d5a4 https://www.encodeproject.org/files/ENCFF263NSE/@@download/ENCFF263NSE.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF639VVK bam unfiltered alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXE, ENCFF018NEO 1397004947 ENCODE Processing Pipeline eb20f1bba95cb88426c34a23d74339c5 https://www.encodeproject.org/files/ENCFF639VVK/@@download/ENCFF639VVK.bam mm10 released low read length, mild to moderate bottlenecking ENCFF425QGI bam unfiltered alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXG, ENCFF018NEO 1625043415 ENCODE Processing Pipeline 394c16cf432d87db893a281b4cd71665 https://www.encodeproject.org/files/ENCFF425QGI/@@download/ENCFF425QGI.bam mm10 released low read length, mild to moderate bottlenecking ENCFF562KIH bam alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXG, ENCFF018NEO 1049021311 ENCODE Processing Pipeline d16ac39d9eb5e18de2af412ec6adec47 https://www.encodeproject.org/files/ENCFF562KIH/@@download/ENCFF562KIH.bam mm10 released low read length, mild to moderate bottlenecking ENCFF082OHV bam alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXE, ENCFF018NEO 899287770 ENCODE Processing Pipeline d7407aa91f465e7c8007b3e663082310 https://www.encodeproject.org/files/ENCFF082OHV/@@download/ENCFF082OHV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF221MRD bed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF082OHV, ENCFF394IRO, ENCFF742VJP 621470 ENCODE Processing Pipeline b29b6a101bf26b5c39c9a83ed6f0bad1 https://www.encodeproject.org/files/ENCFF221MRD/@@download/ENCFF221MRD.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF258GDP bigBed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF732MWI 2022242 ENCODE Processing Pipeline d1f41931c469dbc8173ce1b29793f74d https://www.encodeproject.org/files/ENCFF258GDP/@@download/ENCFF258GDP.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF732MWI bed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF562KIH, ENCFF742VJP 648136 ENCODE Processing Pipeline 658074dd874a81129b7156e6f77aacf2 https://www.encodeproject.org/files/ENCFF732MWI/@@download/ENCFF732MWI.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF228KPV bed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF082OHV, ENCFF394IRO, ENCFF562KIH, ENCFF742VJP 655992 ENCODE Processing Pipeline 1ec30efb008967db84a44fdbe2254f81 https://www.encodeproject.org/files/ENCFF228KPV/@@download/ENCFF228KPV.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF159IUR bigBed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF221MRD 1953281 ENCODE Processing Pipeline 4bdac5ea088da3c38a58109ae1cb785f https://www.encodeproject.org/files/ENCFF159IUR/@@download/ENCFF159IUR.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF885DKS bigBed narrowPeak peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF228KPV 1989909 ENCODE Processing Pipeline b8a4369f242231536fd777f59774f370 https://www.encodeproject.org/files/ENCFF885DKS/@@download/ENCFF885DKS.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF722CBG bigWig signal p-value ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF562KIH, ENCFF742VJP 567286342 ENCODE Processing Pipeline 4f69bfb47f943c2de4171098412a3ced https://www.encodeproject.org/files/ENCFF722CBG/@@download/ENCFF722CBG.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF893CBO bigWig signal p-value ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF082OHV, ENCFF394IRO, ENCFF742VJP 511367525 ENCODE Processing Pipeline 485ee3602e6ce15e0bb778054d546112 https://www.encodeproject.org/files/ENCFF893CBO/@@download/ENCFF893CBO.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF198ZYC bigWig signal p-value ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF082OHV, ENCFF394IRO, ENCFF562KIH, ENCFF742VJP 708926250 ENCODE Processing Pipeline 11e68295258861f40b04edbfb6f14eba https://www.encodeproject.org/files/ENCFF198ZYC/@@download/ENCFF198ZYC.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF038CUB bigWig fold change over control ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF562KIH, ENCFF742VJP 501833093 ENCODE Processing Pipeline 8fdaf0df109aa580d480d125092cc3dc https://www.encodeproject.org/files/ENCFF038CUB/@@download/ENCFF038CUB.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF728OWJ bigWig fold change over control ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF082OHV, ENCFF394IRO, ENCFF742VJP 421035939 ENCODE Processing Pipeline b5320fcf169be20edf5e899d7426ec0f https://www.encodeproject.org/files/ENCFF728OWJ/@@download/ENCFF728OWJ.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF455WJT bigWig fold change over control ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF082OHV, ENCFF394IRO, ENCFF562KIH, ENCFF742VJP 695521374 ENCODE Processing Pipeline c85a74fd540cc6a30d595f53981cc374 https://www.encodeproject.org/files/ENCFF455WJT/@@download/ENCFF455WJT.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF585WBI bed narrowPeak replicated peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF221MRD, ENCFF228KPV, ENCFF732MWI 778333 ENCODE Processing Pipeline af82764cec978c73c42c0a69f5d5d822 https://www.encodeproject.org/files/ENCFF585WBI/@@download/ENCFF585WBI.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF759NNJ bigBed narrowPeak replicated peaks ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF585WBI 1786868 ENCODE Processing Pipeline 5252c7643e2251e4ef1ec3ae8559d244 https://www.encodeproject.org/files/ENCFF759NNJ/@@download/ENCFF759NNJ.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF059LYZ bam alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF260YPM, ENCFF806TVZ 3108546180 ENCODE Processing Pipeline 2695ba3aa6c2124662eda312af349ea7 https://www.encodeproject.org/files/ENCFF059LYZ/@@download/ENCFF059LYZ.bam mm10-minimal archived inconsistent platforms ENCFF186WHZ bam alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF652YKB, ENCFF806TVZ 2992589679 ENCODE Processing Pipeline b2aaf285a9a4c45c0853d4e3eb5a7644 https://www.encodeproject.org/files/ENCFF186WHZ/@@download/ENCFF186WHZ.bam mm10-minimal archived inconsistent platforms ENCFF652YKB fastq reads ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3448348721 Bing Ren, UCSD 838779a2b9ea4f5a2cc50f755345a569 SRA:SRR3651250 https://www.encodeproject.org/files/ENCFF652YKB/@@download/ENCFF652YKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released inconsistent platforms ENCFF260YPM fastq reads ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3595158723 Bing Ren, UCSD ed52291bc597c640592b4edf0406d12d SRA:SRR3651249 https://www.encodeproject.org/files/ENCFF260YPM/@@download/ENCFF260YPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released inconsistent platforms ENCFF152XEZ bed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF186WHZ, ENCFF275UYN, ENCFF301ZSF 3000536 ENCODE Processing Pipeline 13e4a80ea5da6b79c2958219aeddb9b1 https://www.encodeproject.org/files/ENCFF152XEZ/@@download/ENCFF152XEZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF881ZJB bed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF059LYZ, ENCFF275UYN, ENCFF301ZSF 2815796 ENCODE Processing Pipeline c21979139ebe7b4a51a40bab7a09bdb2 https://www.encodeproject.org/files/ENCFF881ZJB/@@download/ENCFF881ZJB.bed.gz mm10-minimal archived inconsistent platforms ENCFF262IWH bed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF059LYZ, ENCFF186WHZ, ENCFF275UYN, ENCFF301ZSF 2804070 ENCODE Processing Pipeline d410d3fc4bd335bb9714db488fc10bf0 https://www.encodeproject.org/files/ENCFF262IWH/@@download/ENCFF262IWH.bed.gz mm10-minimal archived inconsistent platforms ENCFF622GUF bigBed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF262IWH 6915986 ENCODE Processing Pipeline 942c198f30abb91df63bfe339aea8d26 https://www.encodeproject.org/files/ENCFF622GUF/@@download/ENCFF622GUF.bigBed mm10-minimal archived inconsistent platforms ENCFF749PBE bigBed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF881ZJB 6994949 ENCODE Processing Pipeline ac6bb67551591e6ee661a4143d4dff51 https://www.encodeproject.org/files/ENCFF749PBE/@@download/ENCFF749PBE.bigBed mm10-minimal archived inconsistent platforms ENCFF336HRR bigWig signal p-value ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF186WHZ, ENCFF275UYN, ENCFF301ZSF 963224758 ENCODE Processing Pipeline 619fe38ba91ce8c5227cc0f748bae1ca https://www.encodeproject.org/files/ENCFF336HRR/@@download/ENCFF336HRR.bigWig mm10-minimal archived inconsistent platforms ENCFF756YRO bigBed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF152XEZ 7406718 ENCODE Processing Pipeline 51b1b877f92fccf8d9d4977b78a540c2 https://www.encodeproject.org/files/ENCFF756YRO/@@download/ENCFF756YRO.bigBed mm10-minimal archived inconsistent platforms ENCFF186YBX bigWig signal p-value ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF059LYZ, ENCFF275UYN, ENCFF301ZSF 909630622 ENCODE Processing Pipeline 59377d77ad88776713cc8a0b605c3f41 https://www.encodeproject.org/files/ENCFF186YBX/@@download/ENCFF186YBX.bigWig mm10-minimal archived inconsistent platforms ENCFF410NQP bigWig signal p-value ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF059LYZ, ENCFF186WHZ, ENCFF275UYN, ENCFF301ZSF 1285283519 ENCODE Processing Pipeline 543aee8508718382943a82e715d07b7d https://www.encodeproject.org/files/ENCFF410NQP/@@download/ENCFF410NQP.bigWig mm10-minimal archived inconsistent platforms ENCFF897RBV bigWig fold change over control ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF186WHZ, ENCFF275UYN, ENCFF301ZSF 1054045389 ENCODE Processing Pipeline 2c31c6b34a37b7ac22c66dd9fd4ed254 https://www.encodeproject.org/files/ENCFF897RBV/@@download/ENCFF897RBV.bigWig mm10-minimal archived inconsistent platforms ENCFF496ZCD bigWig fold change over control ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF059LYZ, ENCFF186WHZ, ENCFF275UYN, ENCFF301ZSF 1650610747 ENCODE Processing Pipeline 0b9fde93c0991afe1d4ab2649fc975a1 https://www.encodeproject.org/files/ENCFF496ZCD/@@download/ENCFF496ZCD.bigWig mm10-minimal archived inconsistent platforms ENCFF108RES bed narrowPeak replicated peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF152XEZ, ENCFF262IWH, ENCFF881ZJB 2969070 ENCODE Processing Pipeline e3a79000ef395f298f4bf70c4cfcef7b https://www.encodeproject.org/files/ENCFF108RES/@@download/ENCFF108RES.bed.gz mm10-minimal archived inconsistent platforms ENCFF433WKR bigWig fold change over control ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF059LYZ, ENCFF275UYN, ENCFF301ZSF 1076928541 ENCODE Processing Pipeline 5461780f56dc4ea62bfe312b97b5144c https://www.encodeproject.org/files/ENCFF433WKR/@@download/ENCFF433WKR.bigWig mm10-minimal archived inconsistent platforms ENCFF384LLW bigBed narrowPeak replicated peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF108RES 5509959 ENCODE Processing Pipeline 3382d89e4b03c82fdca903bec0274b99 https://www.encodeproject.org/files/ENCFF384LLW/@@download/ENCFF384LLW.bigBed mm10-minimal archived inconsistent platforms ENCFF798QKU bam unfiltered alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF260YPM 4214091896 ENCODE Processing Pipeline a1a39c5f334c4fc2ffe1a729aaf61ffa https://www.encodeproject.org/files/ENCFF798QKU/@@download/ENCFF798QKU.bam mm10 released inconsistent platforms ENCFF411EFN bam unfiltered alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF652YKB 4046206619 ENCODE Processing Pipeline 3f9b0723a087ae548dc79afe1a113ff8 https://www.encodeproject.org/files/ENCFF411EFN/@@download/ENCFF411EFN.bam mm10 released inconsistent platforms ENCFF986TQY bam alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF652YKB 2991978635 ENCODE Processing Pipeline 6581e62e9fbbbd92292d694cf5779832 https://www.encodeproject.org/files/ENCFF986TQY/@@download/ENCFF986TQY.bam mm10 released inconsistent platforms ENCFF046IWE bam alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF260YPM 3107955349 ENCODE Processing Pipeline 9cc54b11e92fafdf2fd8edef9ed9cc5d https://www.encodeproject.org/files/ENCFF046IWE/@@download/ENCFF046IWE.bam mm10 released inconsistent platforms ENCFF937DQV bed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF231HNB, ENCFF396QPU, ENCFF986TQY 3002194 ENCODE Processing Pipeline 94650296f7e496ced658cf1e309aab6d https://www.encodeproject.org/files/ENCFF937DQV/@@download/ENCFF937DQV.bed.gz mm10 released inconsistent platforms ENCFF135SCB bed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF046IWE, ENCFF231HNB, ENCFF396QPU, ENCFF986TQY 3162326 ENCODE Processing Pipeline 272f39f8eba27ce0828606d6039f0384 https://www.encodeproject.org/files/ENCFF135SCB/@@download/ENCFF135SCB.bed.gz mm10 released inconsistent platforms ENCFF598IHJ bed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF046IWE, ENCFF231HNB 2575408 ENCODE Processing Pipeline f25806a9859ea3da484adcef8029c623 https://www.encodeproject.org/files/ENCFF598IHJ/@@download/ENCFF598IHJ.bed.gz mm10 released inconsistent platforms ENCFF438CEE bigBed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF937DQV 7457642 ENCODE Processing Pipeline bd595a763952311f977af00adf7c893e https://www.encodeproject.org/files/ENCFF438CEE/@@download/ENCFF438CEE.bigBed mm10 released inconsistent platforms ENCFF320FMR bigBed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF598IHJ 6442800 ENCODE Processing Pipeline a2adafa8bfa0c9417e66cc97ccd4b165 https://www.encodeproject.org/files/ENCFF320FMR/@@download/ENCFF320FMR.bigBed mm10 released inconsistent platforms ENCFF695PWJ bigBed narrowPeak peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF135SCB 7751023 ENCODE Processing Pipeline 2b471a13b250d83913acf4c6f70687eb https://www.encodeproject.org/files/ENCFF695PWJ/@@download/ENCFF695PWJ.bigBed mm10 released inconsistent platforms ENCFF330XBN bigWig signal p-value ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF231HNB, ENCFF396QPU, ENCFF986TQY 1049507709 ENCODE Processing Pipeline 66a0235046d58af08726ab348d7c74bb https://www.encodeproject.org/files/ENCFF330XBN/@@download/ENCFF330XBN.bigWig mm10 released inconsistent platforms ENCFF938FLF bigWig signal p-value ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF046IWE, ENCFF231HNB 916151685 ENCODE Processing Pipeline 4a7feed8383427848b4923c527794d87 https://www.encodeproject.org/files/ENCFF938FLF/@@download/ENCFF938FLF.bigWig mm10 released inconsistent platforms ENCFF964TSB bigWig signal p-value ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF046IWE, ENCFF231HNB, ENCFF396QPU, ENCFF986TQY 1579289152 ENCODE Processing Pipeline 18fe24e2c58fe06155050ccd553859ca https://www.encodeproject.org/files/ENCFF964TSB/@@download/ENCFF964TSB.bigWig mm10 released inconsistent platforms ENCFF323OIN bigWig fold change over control ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF231HNB, ENCFF396QPU, ENCFF986TQY 1179464672 ENCODE Processing Pipeline a572198ee0e36b52219e6be13d32200f https://www.encodeproject.org/files/ENCFF323OIN/@@download/ENCFF323OIN.bigWig mm10 released inconsistent platforms ENCFF047VSH bigWig fold change over control ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF046IWE, ENCFF231HNB 958531598 ENCODE Processing Pipeline 428af0eafc91e4c4e730a5c9e59cdab9 https://www.encodeproject.org/files/ENCFF047VSH/@@download/ENCFF047VSH.bigWig mm10 released inconsistent platforms ENCFF419CPS bigWig fold change over control ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF046IWE, ENCFF231HNB, ENCFF396QPU, ENCFF986TQY 1696883322 ENCODE Processing Pipeline a559acd9545af22ef3af9fa8df1a8303 https://www.encodeproject.org/files/ENCFF419CPS/@@download/ENCFF419CPS.bigWig mm10 released inconsistent platforms ENCFF868KHT bed narrowPeak replicated peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF135SCB, ENCFF598IHJ, ENCFF937DQV 2861356 ENCODE Processing Pipeline c0ea1d58c740f8a2fb0979db0a448c65 https://www.encodeproject.org/files/ENCFF868KHT/@@download/ENCFF868KHT.bed.gz mm10 released inconsistent platforms ENCFF271IDZ bigBed narrowPeak replicated peaks ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF868KHT 5255034 ENCODE Processing Pipeline 8e4e03a08d7f066ccb2943aa54d17769 https://www.encodeproject.org/files/ENCFF271IDZ/@@download/ENCFF271IDZ.bigBed mm10 released inconsistent platforms ENCFF001KZG bam alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KZS 1558133584 Bing Ren, UCSD 278de2ccfac6c90dc3480b5b01b22915 https://www.encodeproject.org/files/ENCFF001KZG/@@download/ENCFF001KZG.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZH bigBed broadPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZQ 250369 Bing Ren, UCSD 33668c1d5dceb4554df02208dc529030 https://www.encodeproject.org/files/ENCFF001KZH/@@download/ENCFF001KZH.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZI bam alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KZV 1439713956 Bing Ren, UCSD ab0af804e21366b534677bacb17d5a58 https://www.encodeproject.org/files/ENCFF001KZI/@@download/ENCFF001KZI.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZK bigWig signal ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KZG, ENCFF001KZI 89523979 Bing Ren, UCSD 7ee33b0159e53ff69e3c465dc6ab6faa https://www.encodeproject.org/files/ENCFF001KZK/@@download/ENCFF001KZK.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZS fastq reads ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1549629125 Bing Ren, UCSD 23c7b19a0cadd5e125e802e759aeb7bd https://www.encodeproject.org/files/ENCFF001KZS/@@download/ENCFF001KZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF786ODW/ archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZV fastq reads ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1461459796 Bing Ren, UCSD 3a1420665421153eaaafc8e51e759038 https://www.encodeproject.org/files/ENCFF001KZV/@@download/ENCFF001KZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ archived low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001XZQ bed broadPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KZG, ENCFF001KZI 154836 Bing Ren, UCSD 158a89109f0e30dbebfce0fe0e478b14 https://www.encodeproject.org/files/ENCFF001XZQ/@@download/ENCFF001XZQ.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF124NVY bam alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KZS, ENCFF806TVZ 826819032 ENCODE Processing Pipeline 55c2ec5dcdd86bcb8bbecf6099e23695 https://www.encodeproject.org/files/ENCFF124NVY/@@download/ENCFF124NVY.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF908VWF bam alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KZV, ENCFF806TVZ 624762777 ENCODE Processing Pipeline 414cabf720e30dd2fc966ae929103f44 https://www.encodeproject.org/files/ENCFF908VWF/@@download/ENCFF908VWF.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF724FZB bam unfiltered alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KZV, ENCFF018NEO 1434854315 ENCODE Processing Pipeline bc38ad5a135535d4642bc0b3c49a309c https://www.encodeproject.org/files/ENCFF724FZB/@@download/ENCFF724FZB.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF134JCM bam unfiltered alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KZS, ENCFF018NEO 1555129170 ENCODE Processing Pipeline 79e1b6c491187720d629f21b28a7d526 https://www.encodeproject.org/files/ENCFF134JCM/@@download/ENCFF134JCM.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF298TLT bam alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KZS, ENCFF018NEO 717634463 ENCODE Processing Pipeline 8d045a6f265e33e20189982a76d1d674 https://www.encodeproject.org/files/ENCFF298TLT/@@download/ENCFF298TLT.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF991RQC bam alignments ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KZV, ENCFF018NEO 539106340 ENCODE Processing Pipeline 8b72b527939d0e1ac15be3a7b12cadc9 https://www.encodeproject.org/files/ENCFF991RQC/@@download/ENCFF991RQC.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF510LKS bigWig fold change over control ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF991RQC 285440056 ENCODE Processing Pipeline d3008310080249d2ffa8746349542e53 https://www.encodeproject.org/files/ENCFF510LKS/@@download/ENCFF510LKS.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF837CAY bigBed narrowPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF149QUC 1210876 ENCODE Processing Pipeline 0f67c59497063b6bcbab1d060e6baff3 https://www.encodeproject.org/files/ENCFF837CAY/@@download/ENCFF837CAY.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF824KRV bed narrowPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF991RQC 1007283 ENCODE Processing Pipeline ecd8340315401ab0fd4c578d56af7184 https://www.encodeproject.org/files/ENCFF824KRV/@@download/ENCFF824KRV.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF270UYE bigBed narrowPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF824KRV 1947586 ENCODE Processing Pipeline 5cd9be5837b5227bac040cdc2c0d9798 https://www.encodeproject.org/files/ENCFF270UYE/@@download/ENCFF270UYE.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF979HND bigWig signal p-value ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF991RQC 431271947 ENCODE Processing Pipeline 5439c36953b20a5fdac3e4f68414ff94 https://www.encodeproject.org/files/ENCFF979HND/@@download/ENCFF979HND.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF407CJP bigWig fold change over control ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF132CII, ENCFF298TLT, ENCFF379WSY, ENCFF991RQC 536221449 ENCODE Processing Pipeline 8b385c295b392ade82c16d2ee4bf166b https://www.encodeproject.org/files/ENCFF407CJP/@@download/ENCFF407CJP.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF029PTF bed narrowPeak replicated peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF149QUC, ENCFF824KRV, ENCFF986XIA 215276 ENCODE Processing Pipeline 9bd707766235e2c7658be49d27378b72 https://www.encodeproject.org/files/ENCFF029PTF/@@download/ENCFF029PTF.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF399QNS bigWig signal p-value ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF132CII, ENCFF298TLT, ENCFF379WSY, ENCFF991RQC 537594960 ENCODE Processing Pipeline a82878ff8aac2ff7da912f6e6fac57b6 https://www.encodeproject.org/files/ENCFF399QNS/@@download/ENCFF399QNS.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF692EBJ bigBed narrowPeak replicated peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF029PTF 488741 ENCODE Processing Pipeline 1bce7cebb76f6daed46162f0c6131240 https://www.encodeproject.org/files/ENCFF692EBJ/@@download/ENCFF692EBJ.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF149QUC bed narrowPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF132CII, ENCFF298TLT, ENCFF379WSY 534606 ENCODE Processing Pipeline 32e32a9aa400c9408564c77ac91ff72f https://www.encodeproject.org/files/ENCFF149QUC/@@download/ENCFF149QUC.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF705NLF bigWig signal p-value ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF132CII, ENCFF298TLT, ENCFF379WSY 411386910 ENCODE Processing Pipeline c9202cf2ffb5bcc715f353671094b5c6 https://www.encodeproject.org/files/ENCFF705NLF/@@download/ENCFF705NLF.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF986XIA bed narrowPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF132CII, ENCFF298TLT, ENCFF379WSY, ENCFF991RQC 427449 ENCODE Processing Pipeline 8e0abe51f342d82de4b730ef1ffe3aa8 https://www.encodeproject.org/files/ENCFF986XIA/@@download/ENCFF986XIA.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF358ASB bigBed narrowPeak peaks ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF986XIA 962444 ENCODE Processing Pipeline 708a796f5d8ddda85db49617f7008d22 https://www.encodeproject.org/files/ENCFF358ASB/@@download/ENCFF358ASB.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF017MLT bigWig fold change over control ENCSR000CGE ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF132CII, ENCFF298TLT, ENCFF379WSY 347980117 ENCODE Processing Pipeline f66af714a231fb12f46b782df0f4ced6 https://www.encodeproject.org/files/ENCFF017MLT/@@download/ENCFF017MLT.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAG bam alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LAO 892921512 Bing Ren, UCSD 9faa26f6d0b45caf7d72eddafd5c276e https://www.encodeproject.org/files/ENCFF001LAG/@@download/ENCFF001LAG.bam mm9 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LAK bigWig signal ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LAG 79825330 Bing Ren, UCSD 4d42ae86cf55719cc5a271e871cf54c1 https://www.encodeproject.org/files/ENCFF001LAK/@@download/ENCFF001LAK.bigWig mm9 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LAO fastq reads ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 924394499 Bing Ren, UCSD aaa19c4c2251673d7135a255061be59a https://www.encodeproject.org/files/ENCFF001LAO/@@download/ENCFF001LAO.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF376NWD bam unfiltered alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LAO, ENCFF806TVZ 942687273 J. Michael Cherry, Stanford ed549583af54e1b253bd2a5ecd21ff56 https://www.encodeproject.org/files/ENCFF376NWD/@@download/ENCFF376NWD.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF451TDX bam alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LAO, ENCFF806TVZ 205159889 J. Michael Cherry, Stanford 2229c5a6b2eb73ee4c4961dadb0fe236 https://www.encodeproject.org/files/ENCFF451TDX/@@download/ENCFF451TDX.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF786ODW fastq reads ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 887333452 Bing Ren, UCSD 41a5316474b39afeb79cde365bee4455 https://www.encodeproject.org/files/ENCFF786ODW/@@download/ENCFF786ODW.fastq.gz Illumina Genome Analyzer II released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF379WSY bam alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LAO, ENCFF018NEO 205123499 ENCODE Processing Pipeline 274fdbf89b652d3da4dc2588d463c84a https://www.encodeproject.org/files/ENCFF379WSY/@@download/ENCFF379WSY.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF203NOX bam unfiltered alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LAO, ENCFF018NEO 943221245 ENCODE Processing Pipeline 2668223ef27909f3ab253006f4c51c96 https://www.encodeproject.org/files/ENCFF203NOX/@@download/ENCFF203NOX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF240ENY bam unfiltered alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF018NEO, ENCFF786ODW 1009967487 ENCODE Processing Pipeline d5bf67a8b8040951ce094d8d8a1443c6 https://www.encodeproject.org/files/ENCFF240ENY/@@download/ENCFF240ENY.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF132CII bam alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF018NEO, ENCFF786ODW 654557969 ENCODE Processing Pipeline 41dd513fd206b7609371a3cf6e55ac22 https://www.encodeproject.org/files/ENCFF132CII/@@download/ENCFF132CII.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001KCY bigBed broadPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWO 859683 Bing Ren, UCSD a0e8090cd6900069c1b17df9c95284be https://www.encodeproject.org/files/ENCFF001KCY/@@download/ENCFF001KCY.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KCZ bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KDK 1541713621 Bing Ren, UCSD 8cf52dcd1e4b8d6feff12a296e14410b https://www.encodeproject.org/files/ENCFF001KCZ/@@download/ENCFF001KCZ.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KDA bigWig signal ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KCZ, ENCFF001KDB 44452177 Bing Ren, UCSD 5193a0266aa10b998e27364472a61fc7 https://www.encodeproject.org/files/ENCFF001KDA/@@download/ENCFF001KDA.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KDB bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KDL 1744490474 Bing Ren, UCSD 610abca74c9dbc1d5c749b7b36ad17e6 https://www.encodeproject.org/files/ENCFF001KDB/@@download/ENCFF001KDB.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KDK fastq reads ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1667772413 Bing Ren, UCSD c861d0d72460e9ccc29044c5f5639c68 https://www.encodeproject.org/files/ENCFF001KDK/@@download/ENCFF001KDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEU/ released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KDL fastq reads ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1933839545 Bing Ren, UCSD 38536d6cdf93f050e3c6af4d79a4f227 https://www.encodeproject.org/files/ENCFF001KDL/@@download/ENCFF001KDL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEX/ released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XWO bed broadPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KCZ, ENCFF001KDB 525976 Bing Ren, UCSD c2e7f5df28c0ae886f75660b9223d89f https://www.encodeproject.org/files/ENCFF001XWO/@@download/ENCFF001XWO.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF991TLM bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KDL, ENCFF806TVZ 523901467 ENCODE Processing Pipeline 4545f1b159d7bec638e435d1d187487b https://www.encodeproject.org/files/ENCFF991TLM/@@download/ENCFF991TLM.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF303RDP bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KDK, ENCFF806TVZ 582814564 ENCODE Processing Pipeline b85232dac08568a2a626667afcf5c13c https://www.encodeproject.org/files/ENCFF303RDP/@@download/ENCFF303RDP.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF725OEV bed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF303RDP, ENCFF343KWM, ENCFF749CPB 1718459 ENCODE Processing Pipeline d297551dd3a3c1786a85512f7e4ce9bb https://www.encodeproject.org/files/ENCFF725OEV/@@download/ENCFF725OEV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF118MTZ bigBed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF725OEV 4916172 ENCODE Processing Pipeline 83794ab75d001e42a4459e249a3d5823 https://www.encodeproject.org/files/ENCFF118MTZ/@@download/ENCFF118MTZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF917EEG bigWig signal p-value ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF303RDP, ENCFF343KWM, ENCFF749CPB 370525819 ENCODE Processing Pipeline c45f65b42ab2ec928cc5754ca3fbf690 https://www.encodeproject.org/files/ENCFF917EEG/@@download/ENCFF917EEG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF591JCS bigWig signal p-value ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF343KWM, ENCFF749CPB, ENCFF991TLM 389727573 ENCODE Processing Pipeline abbaecb1bd4f0a8f49e3eebf98b58413 https://www.encodeproject.org/files/ENCFF591JCS/@@download/ENCFF591JCS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF811LJN bigBed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF991XVU 4780337 ENCODE Processing Pipeline 276f35bf38ab4b5ad4ffffc250dddf00 https://www.encodeproject.org/files/ENCFF811LJN/@@download/ENCFF811LJN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF888ZJW bigBed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF213BTW 5305877 ENCODE Processing Pipeline ad4e448dac968163b16b43587a43de0a https://www.encodeproject.org/files/ENCFF888ZJW/@@download/ENCFF888ZJW.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF634GLQ bigWig fold change over control ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF343KWM, ENCFF749CPB, ENCFF991TLM 225374858 ENCODE Processing Pipeline 6b0a2c651d72c186d66fcac81f32c3b3 https://www.encodeproject.org/files/ENCFF634GLQ/@@download/ENCFF634GLQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF991XVU bed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF343KWM, ENCFF749CPB, ENCFF991TLM 1648660 ENCODE Processing Pipeline c4c787f63e36e1603b9cb6e0cd4194db https://www.encodeproject.org/files/ENCFF991XVU/@@download/ENCFF991XVU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF213BTW bed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF303RDP, ENCFF343KWM, ENCFF749CPB, ENCFF991TLM 1907909 ENCODE Processing Pipeline 441655f84aaa70f7a4fd1c6e002bf0e6 https://www.encodeproject.org/files/ENCFF213BTW/@@download/ENCFF213BTW.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF142ZLW bigWig fold change over control ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF303RDP, ENCFF343KWM, ENCFF749CPB, ENCFF991TLM 387974108 ENCODE Processing Pipeline 496e7b7b5e3d6af3b1036551fab8a21e https://www.encodeproject.org/files/ENCFF142ZLW/@@download/ENCFF142ZLW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF553UNE bigBed narrowPeak replicated peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF632GFC 3201015 ENCODE Processing Pipeline 8b7a7d5b7c540a01c98ea46332c57dcd https://www.encodeproject.org/files/ENCFF553UNE/@@download/ENCFF553UNE.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF007TEQ bigWig signal p-value ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF303RDP, ENCFF343KWM, ENCFF749CPB, ENCFF991TLM 452652004 ENCODE Processing Pipeline 3166c09f28bdff0b7620e5ebb21be938 https://www.encodeproject.org/files/ENCFF007TEQ/@@download/ENCFF007TEQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF666JMB bigWig fold change over control ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF303RDP, ENCFF343KWM, ENCFF749CPB 241211787 ENCODE Processing Pipeline 51991bcd0f6ae240b2511185684270eb https://www.encodeproject.org/files/ENCFF666JMB/@@download/ENCFF666JMB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF632GFC bed narrowPeak replicated peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF213BTW, ENCFF725OEV, ENCFF991XVU 1589006 ENCODE Processing Pipeline 8805939c25e89e37a44b7e84d2e3381a https://www.encodeproject.org/files/ENCFF632GFC/@@download/ENCFF632GFC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF366SJD bam unfiltered alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KDK, ENCFF806TVZ 1561695637 ENCODE Processing Pipeline c10c6cbee4833a2feec3f3f54abf26d4 https://www.encodeproject.org/files/ENCFF366SJD/@@download/ENCFF366SJD.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF862MKK bam unfiltered alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KDL, ENCFF806TVZ 1751026141 ENCODE Processing Pipeline 09324c0d4e33a422820b468d1a03e879 https://www.encodeproject.org/files/ENCFF862MKK/@@download/ENCFF862MKK.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF960PCB bam unfiltered alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KDK, ENCFF018NEO 1286467785 ENCODE Processing Pipeline 616a2b25b3c3f1bd1bc8523cbf2df4a6 https://www.encodeproject.org/files/ENCFF960PCB/@@download/ENCFF960PCB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF196LBN bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KDK, ENCFF018NEO 465800035 ENCODE Processing Pipeline c548833a6c03d8bcabe46301b6240466 https://www.encodeproject.org/files/ENCFF196LBN/@@download/ENCFF196LBN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF044BCL bam unfiltered alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KDL, ENCFF018NEO 1443461858 ENCODE Processing Pipeline 0a67ddcaf44898638182e6dbb0b2df8d https://www.encodeproject.org/files/ENCFF044BCL/@@download/ENCFF044BCL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF156BTU bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KDL, ENCFF018NEO 418555332 ENCODE Processing Pipeline 52ed03070e95143cceb9f5fdabe33e1c https://www.encodeproject.org/files/ENCFF156BTU/@@download/ENCFF156BTU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF842PBX bed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF196LBN, ENCFF439WCI, ENCFF683TKC 1722017 ENCODE Processing Pipeline 712066906db0deb802d27f0d6f4deb8f https://www.encodeproject.org/files/ENCFF842PBX/@@download/ENCFF842PBX.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF124WRZ bed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF156BTU, ENCFF439WCI, ENCFF683TKC 1646932 ENCODE Processing Pipeline 24b4d50362b489e571e2bd7a9c740aa4 https://www.encodeproject.org/files/ENCFF124WRZ/@@download/ENCFF124WRZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF369BBR bed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF156BTU, ENCFF196LBN, ENCFF439WCI, ENCFF683TKC 1948096 ENCODE Processing Pipeline c16f39b123359d2e29c5803216f50d25 https://www.encodeproject.org/files/ENCFF369BBR/@@download/ENCFF369BBR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF623YDT bigBed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF842PBX 4875190 ENCODE Processing Pipeline 1450bfb9f604741096778140d49f69ca https://www.encodeproject.org/files/ENCFF623YDT/@@download/ENCFF623YDT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF685AZD bigBed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF124WRZ 4728291 ENCODE Processing Pipeline 4b44d3b3a2b23258a5480a3c2b46fc27 https://www.encodeproject.org/files/ENCFF685AZD/@@download/ENCFF685AZD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF519QGF bigBed narrowPeak peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF369BBR 5358536 ENCODE Processing Pipeline 32f281c7946b159ece92ea0586426c24 https://www.encodeproject.org/files/ENCFF519QGF/@@download/ENCFF519QGF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF016NNS bigWig signal p-value ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF156BTU, ENCFF439WCI, ENCFF683TKC 420267027 ENCODE Processing Pipeline 7ab919e6c79be1beabff4c69973192cd https://www.encodeproject.org/files/ENCFF016NNS/@@download/ENCFF016NNS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF342SOW bigWig signal p-value ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF156BTU, ENCFF196LBN, ENCFF439WCI, ENCFF683TKC 473804618 ENCODE Processing Pipeline 45b7b47823d5f60b7b0883f81e1bdc8c https://www.encodeproject.org/files/ENCFF342SOW/@@download/ENCFF342SOW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF290XDT bed narrowPeak replicated peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF124WRZ, ENCFF369BBR, ENCFF842PBX 1595215 ENCODE Processing Pipeline f1178883525c7d5a28bb18e8fcba2d2b https://www.encodeproject.org/files/ENCFF290XDT/@@download/ENCFF290XDT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF926NCB bigWig signal p-value ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF196LBN, ENCFF439WCI, ENCFF683TKC 441137353 ENCODE Processing Pipeline 66f218c0dc4e9c62c05ece8cacb3f815 https://www.encodeproject.org/files/ENCFF926NCB/@@download/ENCFF926NCB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF446ARA bigWig fold change over control ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF156BTU, ENCFF439WCI, ENCFF683TKC 221222389 ENCODE Processing Pipeline 052cde6e89417ce816e75e4a477f5178 https://www.encodeproject.org/files/ENCFF446ARA/@@download/ENCFF446ARA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF609ZSZ bigWig fold change over control ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF156BTU, ENCFF196LBN, ENCFF439WCI, ENCFF683TKC 382140592 ENCODE Processing Pipeline d255abd45a5ec2874cd6c4b16f2bfb5f https://www.encodeproject.org/files/ENCFF609ZSZ/@@download/ENCFF609ZSZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF120FJO bigBed narrowPeak replicated peaks ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF290XDT 3189661 ENCODE Processing Pipeline 3dc422e4a3669d929872e610ea3e289a https://www.encodeproject.org/files/ENCFF120FJO/@@download/ENCFF120FJO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF051WBY bigWig fold change over control ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF196LBN, ENCFF439WCI, ENCFF683TKC 235338255 ENCODE Processing Pipeline 9ee305d5ec588249bca488b5755496c4 https://www.encodeproject.org/files/ENCFF051WBY/@@download/ENCFF051WBY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF002AQW fastq reads ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1123295368 Bing Ren, UCSD 9a59ef2908c22504652b0df9b9d9e828 SRA:SRR3652553 https://www.encodeproject.org/files/ENCFF002AQW/@@download/ENCFF002AQW.fastq.gz Illumina HiSeq 2500 released low read depth insufficient read depth for broad peaks control ENCFF002ARB fastq reads ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1710740227 Bing Ren, UCSD 1e691cef757318f54812100e416c9df9 SRA:SRR3652554 https://www.encodeproject.org/files/ENCFF002ARB/@@download/ENCFF002ARB.fastq.gz Illumina HiSeq 2500 released low read depth insufficient read depth for broad peaks control ENCFF016UCW bam unfiltered alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARB, ENCFF806TVZ 1936206560 ENCODE Processing Pipeline 7d3bfaf1bb8621fd79610c9f0de4c85e https://www.encodeproject.org/files/ENCFF016UCW/@@download/ENCFF016UCW.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF854TIP bam unfiltered alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQW, ENCFF806TVZ 1287212696 ENCODE Processing Pipeline 15183343f323b5fb70ebe700999d3fb7 https://www.encodeproject.org/files/ENCFF854TIP/@@download/ENCFF854TIP.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF261VSL bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARB, ENCFF806TVZ 1303880757 ENCODE Processing Pipeline 69741ef0c63caff005ac46fa5af1e408 https://www.encodeproject.org/files/ENCFF261VSL/@@download/ENCFF261VSL.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF819FNM bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQW, ENCFF806TVZ 873138727 ENCODE Processing Pipeline 9ae87e51bf727ec33de597dd801bb287 https://www.encodeproject.org/files/ENCFF819FNM/@@download/ENCFF819FNM.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF521VQA bam unfiltered alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQW, ENCFF018NEO 1289046367 ENCODE Processing Pipeline da51af8025df41a0523c841d89a287ba https://www.encodeproject.org/files/ENCFF521VQA/@@download/ENCFF521VQA.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF521XJY bam unfiltered alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ARB, ENCFF018NEO 1938702795 ENCODE Processing Pipeline 0f0f9ef786fab235d3cb3a4fb25a01e5 https://www.encodeproject.org/files/ENCFF521XJY/@@download/ENCFF521XJY.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF472HVK bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQW, ENCFF018NEO 872889247 ENCODE Processing Pipeline 325caa5b99e9a377be3f3d64829f632d https://www.encodeproject.org/files/ENCFF472HVK/@@download/ENCFF472HVK.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF815EAE bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ARB, ENCFF018NEO 1303544272 ENCODE Processing Pipeline 985969f84ad955f0a082edbc8bda732a https://www.encodeproject.org/files/ENCFF815EAE/@@download/ENCFF815EAE.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF968GIU bam unfiltered alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARB, ENCFF018NEO 1581289600 ENCODE Processing Pipeline fed1cd746b6ee7817571172031aad937 https://www.encodeproject.org/files/ENCFF968GIU/@@download/ENCFF968GIU.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF054KQU bam unfiltered alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQW, ENCFF018NEO 1049531815 ENCODE Processing Pipeline 244da36adae64df30b6aec23742d91d0 https://www.encodeproject.org/files/ENCFF054KQU/@@download/ENCFF054KQU.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF451QHB bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQW, ENCFF018NEO 667705403 ENCODE Processing Pipeline c9419d07b6fb0d294e6ca585ec4fa0e8 https://www.encodeproject.org/files/ENCFF451QHB/@@download/ENCFF451QHB.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF438SAE bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARB, ENCFF018NEO 999560738 ENCODE Processing Pipeline 545dd54e0e72fd4fbaab5ef0ee4562a3 https://www.encodeproject.org/files/ENCFF438SAE/@@download/ENCFF438SAE.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF002EUA fastq reads ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1393953201 Bing Ren, UCSD 1ad0f28034d082d68982ba7af05aa657 SRA:SRR3653166 https://www.encodeproject.org/files/ENCFF002EUA/@@download/ENCFF002EUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYB/ released low read length insufficient read depth, control insufficient read depth ENCFF002EUK fastq reads ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1551463305 Bing Ren, UCSD dede2b127f01724d8cb451cd4734ff93 SRA:SRR3653167 https://www.encodeproject.org/files/ENCFF002EUK/@@download/ENCFF002EUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYC/ released low read length insufficient read depth, control insufficient read depth ENCFF564ARX bam alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUK, ENCFF806TVZ 1117588487 ENCODE Processing Pipeline c8dbd5d1aad7195a4072fda11db8396d https://www.encodeproject.org/files/ENCFF564ARX/@@download/ENCFF564ARX.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF789IIB bam alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUA, ENCFF806TVZ 1020168458 ENCODE Processing Pipeline 9de489ec13948ae89444b2fe444780af https://www.encodeproject.org/files/ENCFF789IIB/@@download/ENCFF789IIB.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF833RYX bigBed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF166OWU 2735068 ENCODE Processing Pipeline e0a5d2ce57cb5901185cd9e4fa565a66 https://www.encodeproject.org/files/ENCFF833RYX/@@download/ENCFF833RYX.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF946CLE bed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF564ARX 1716292 ENCODE Processing Pipeline 56380f7d6c9327db46480531a9fcf0dd https://www.encodeproject.org/files/ENCFF946CLE/@@download/ENCFF946CLE.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF906HLJ bigBed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF492EMN 6074942 ENCODE Processing Pipeline b30aca7c11f5013a4d3ad6b43320f36e https://www.encodeproject.org/files/ENCFF906HLJ/@@download/ENCFF906HLJ.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF384HHS bigWig signal p-value ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF783YRC, ENCFF789IIB 349256972 ENCODE Processing Pipeline 32207629dd933991b835f405efbef710 https://www.encodeproject.org/files/ENCFF384HHS/@@download/ENCFF384HHS.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF166OWU bed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF783YRC, ENCFF789IIB 1266289 ENCODE Processing Pipeline c722a1dbb594fb0fb53e4496c4eee1cb https://www.encodeproject.org/files/ENCFF166OWU/@@download/ENCFF166OWU.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF492EMN bed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF564ARX, ENCFF783YRC, ENCFF789IIB 2442351 ENCODE Processing Pipeline 38acb2ef41e953373b530f98c89e6a8e https://www.encodeproject.org/files/ENCFF492EMN/@@download/ENCFF492EMN.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF158ARD bigBed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF946CLE 3482042 ENCODE Processing Pipeline 78f0661f200e63f7428628e81cf798a1 https://www.encodeproject.org/files/ENCFF158ARD/@@download/ENCFF158ARD.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF870JHA bigWig signal p-value ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF564ARX, ENCFF783YRC, ENCFF789IIB 669225776 ENCODE Processing Pipeline 801f44ea49c20e5164c21ab57d31dddc https://www.encodeproject.org/files/ENCFF870JHA/@@download/ENCFF870JHA.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF412DZI bigWig signal p-value ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF564ARX 458258078 ENCODE Processing Pipeline 6db79498a879398fe1b6356c65a5e344 https://www.encodeproject.org/files/ENCFF412DZI/@@download/ENCFF412DZI.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF476WKN bigWig fold change over control ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF564ARX, ENCFF783YRC, ENCFF789IIB 880160495 ENCODE Processing Pipeline 2159e8feaf4242b68e94436edcdbd471 https://www.encodeproject.org/files/ENCFF476WKN/@@download/ENCFF476WKN.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF249NRJ bed narrowPeak replicated peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF166OWU, ENCFF492EMN, ENCFF946CLE 1056025 ENCODE Processing Pipeline d44b48675105a00f293e5b0ee71e3949 https://www.encodeproject.org/files/ENCFF249NRJ/@@download/ENCFF249NRJ.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF121KHU bigWig fold change over control ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF783YRC, ENCFF789IIB 415866629 ENCODE Processing Pipeline 701542283cd67d5e8dc9e07e775218a0 https://www.encodeproject.org/files/ENCFF121KHU/@@download/ENCFF121KHU.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF744JLW bigBed narrowPeak replicated peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF249NRJ 2357655 ENCODE Processing Pipeline e87c8ea28f393e4abc3e9acdc27122ab https://www.encodeproject.org/files/ENCFF744JLW/@@download/ENCFF744JLW.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF532KJK bigWig fold change over control ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF564ARX 455145316 ENCODE Processing Pipeline df3bd25c17de7f69973e5fe68138e87e https://www.encodeproject.org/files/ENCFF532KJK/@@download/ENCFF532KJK.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF211GDY bam unfiltered alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUA, ENCFF018NEO 1776733558 ENCODE Processing Pipeline 314d7bdacedb451acfd6b79bc6ffa26b https://www.encodeproject.org/files/ENCFF211GDY/@@download/ENCFF211GDY.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF852VCN bam alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUK, ENCFF018NEO 1117276499 ENCODE Processing Pipeline 0281e681c1cf8c79a40129d2ec8de09a https://www.encodeproject.org/files/ENCFF852VCN/@@download/ENCFF852VCN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF362DLH bam unfiltered alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUK, ENCFF018NEO 1965381673 ENCODE Processing Pipeline d7553524eb50c3c78ed49de0fcb4a7f9 https://www.encodeproject.org/files/ENCFF362DLH/@@download/ENCFF362DLH.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF822DNM bam alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUA, ENCFF018NEO 1019814549 ENCODE Processing Pipeline 90e3c765a22df92c6cd34c8f31b1c92d https://www.encodeproject.org/files/ENCFF822DNM/@@download/ENCFF822DNM.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF764RRE bed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF658UBJ, ENCFF822DNM 1261209 ENCODE Processing Pipeline cdcb5578a4174096945544dc8bd8c94b https://www.encodeproject.org/files/ENCFF764RRE/@@download/ENCFF764RRE.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF981RZX bed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF852VCN 1722889 ENCODE Processing Pipeline 104152f1a39f46f347bca2784523eaa9 https://www.encodeproject.org/files/ENCFF981RZX/@@download/ENCFF981RZX.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF479WZQ bed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF822DNM, ENCFF852VCN 2243101 ENCODE Processing Pipeline e2238d6f306f55fc14b7588920316688 https://www.encodeproject.org/files/ENCFF479WZQ/@@download/ENCFF479WZQ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF639QVY bigBed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF764RRE 2730197 ENCODE Processing Pipeline 6ea1e0bcca8cb61021313aa9663621bf https://www.encodeproject.org/files/ENCFF639QVY/@@download/ENCFF639QVY.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF550JYI bigBed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF479WZQ 5606811 ENCODE Processing Pipeline 9bb0eab1c6c5e4070358fc5632272546 https://www.encodeproject.org/files/ENCFF550JYI/@@download/ENCFF550JYI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF651AOF bigBed narrowPeak peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF981RZX 3496693 ENCODE Processing Pipeline c7816ac9fbc4e3412cae2b9f2c5c6daf https://www.encodeproject.org/files/ENCFF651AOF/@@download/ENCFF651AOF.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF037RLO bigWig signal p-value ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF658UBJ, ENCFF822DNM 379071708 ENCODE Processing Pipeline 4462b99e2e0c884454b587793f27d404 https://www.encodeproject.org/files/ENCFF037RLO/@@download/ENCFF037RLO.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF867WZK bigWig signal p-value ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF852VCN 404623831 ENCODE Processing Pipeline f0e67d612e235cb395599db9f4cf55f1 https://www.encodeproject.org/files/ENCFF867WZK/@@download/ENCFF867WZK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF183AYH bigWig signal p-value ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF822DNM, ENCFF852VCN 657682019 ENCODE Processing Pipeline 0439e96d776308ecdf80dd3d1f438e63 https://www.encodeproject.org/files/ENCFF183AYH/@@download/ENCFF183AYH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF566MGQ bigWig fold change over control ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF658UBJ, ENCFF822DNM 416208724 ENCODE Processing Pipeline 47e9f9c103149a12db4d6aa37f3b064b https://www.encodeproject.org/files/ENCFF566MGQ/@@download/ENCFF566MGQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF484LPY bigWig fold change over control ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF852VCN 456464887 ENCODE Processing Pipeline 92c761fc1ceee87cdec5f98cf00a911b https://www.encodeproject.org/files/ENCFF484LPY/@@download/ENCFF484LPY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF454YLV bigWig fold change over control ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF822DNM, ENCFF852VCN 898048025 ENCODE Processing Pipeline f80f1a8baf759cf1badea753d0d59f87 https://www.encodeproject.org/files/ENCFF454YLV/@@download/ENCFF454YLV.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF868NOS bed narrowPeak replicated peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF479WZQ, ENCFF764RRE, ENCFF981RZX 1058729 ENCODE Processing Pipeline f78632f38366606c7964389fca692680 https://www.encodeproject.org/files/ENCFF868NOS/@@download/ENCFF868NOS.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002NJQ bigBed narrowPeak replicated peaks ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF868NOS 2373185 ENCODE Processing Pipeline 79bd3c3dc4e2de441c7cdbd32ebfaeb5 https://www.encodeproject.org/files/ENCFF002NJQ/@@download/ENCFF002NJQ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001LFR bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGI 1153612473 Bing Ren, UCSD 19a4854564b4635c461d2cc16ca10647 https://www.encodeproject.org/files/ENCFF001LFR/@@download/ENCFF001LFR.bam mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001LFT bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LGH 647718774 Bing Ren, UCSD 45e9ad14f48a4e3dfb9a2f436dc75020 https://www.encodeproject.org/files/ENCFF001LFT/@@download/ENCFF001LFT.bam mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001LFU bigBed broadPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001XZU 327446 Bing Ren, UCSD 3a48a7020107030b45bad7dc5ad15a9c https://www.encodeproject.org/files/ENCFF001LFU/@@download/ENCFF001LFU.bigBed mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001LFX bigWig signal ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LFR, ENCFF001LFT 65418960 Bing Ren, UCSD 44feda014accb86f7ed7ec4bbcfce12e https://www.encodeproject.org/files/ENCFF001LFX/@@download/ENCFF001LFX.bigWig mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001LGH fastq reads ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 741545851 Bing Ren, UCSD 183aa93675447d7779c373e1da2378c7 https://www.encodeproject.org/files/ENCFF001LGH/@@download/ENCFF001LGH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYM/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001LGI fastq reads ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 1453014793 Bing Ren, UCSD 62dd21da575725327cd70ede798149c9 https://www.encodeproject.org/files/ENCFF001LGI/@@download/ENCFF001LGI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYN/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001XZU bed broadPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LFR, ENCFF001LFT 207159 Bing Ren, UCSD 747b18f3bbdfce90f8810790392ab410 https://www.encodeproject.org/files/ENCFF001XZU/@@download/ENCFF001XZU.bed.gz mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF911ZCR bam unfiltered alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 823865506 ENCODE Processing Pipeline cf25cb18a14b34ad12ec6802fd1a8b8b https://www.encodeproject.org/files/ENCFF911ZCR/@@download/ENCFF911ZCR.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF891BRQ bam unfiltered alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 1642049188 ENCODE Processing Pipeline 4718b049e13e3bd6c066d8dfa4eaa7f8 https://www.encodeproject.org/files/ENCFF891BRQ/@@download/ENCFF891BRQ.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF671WIS bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 400255827 ENCODE Processing Pipeline 00c98166791f20d9cde0244725fec6a4 https://www.encodeproject.org/files/ENCFF671WIS/@@download/ENCFF671WIS.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF977LTN bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 976371376 ENCODE Processing Pipeline 87c806fad99da0a5dde553c0806efa8c https://www.encodeproject.org/files/ENCFF977LTN/@@download/ENCFF977LTN.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF459NZX bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 363577944 ENCODE Processing Pipeline d0d956307532b52b32b4dcac7b3eb80e https://www.encodeproject.org/files/ENCFF459NZX/@@download/ENCFF459NZX.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF872MDP bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 353898980 ENCODE Processing Pipeline 037d07b997bb28a9d7a833317abae16d https://www.encodeproject.org/files/ENCFF872MDP/@@download/ENCFF872MDP.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF900XVJ bed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 2525666 ENCODE Processing Pipeline 3b0f2b2c8d4f9a88abafa9e25d507f8a https://www.encodeproject.org/files/ENCFF900XVJ/@@download/ENCFF900XVJ.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF211XET bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 125688667 ENCODE Processing Pipeline bbd03a1418a84503c5f6f84a9b5cd9d6 https://www.encodeproject.org/files/ENCFF211XET/@@download/ENCFF211XET.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF156BYW bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 448661830 ENCODE Processing Pipeline a9737317a0975431275563231ddbc73c https://www.encodeproject.org/files/ENCFF156BYW/@@download/ENCFF156BYW.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF846ENI bed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 4558545 ENCODE Processing Pipeline 79c109b69a401b2397c280c9a0c4232a https://www.encodeproject.org/files/ENCFF846ENI/@@download/ENCFF846ENI.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF964XDN bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 156411747 ENCODE Processing Pipeline 3b414c61b14bf9670f89b06163917a7c https://www.encodeproject.org/files/ENCFF964XDN/@@download/ENCFF964XDN.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF708MJD bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 352260374 ENCODE Processing Pipeline 62123e1262392c6287ecad570d7527a4 https://www.encodeproject.org/files/ENCFF708MJD/@@download/ENCFF708MJD.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF452OAE bigBed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF900XVJ 5373960 ENCODE Processing Pipeline fbb199f9746658569a0d2d83ed99a87e https://www.encodeproject.org/files/ENCFF452OAE/@@download/ENCFF452OAE.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF938YDD bed narrowPeak conservative idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF774XDZ, ENCFF846ENI, ENCFF900XVJ 403801 ENCODE Processing Pipeline 11735e6d07bde5d9136a8cefc729dae3 https://www.encodeproject.org/files/ENCFF938YDD/@@download/ENCFF938YDD.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF929VCS bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF938YDD 772584 ENCODE Processing Pipeline 0395ecc0d165f122db1419f408594ebb https://www.encodeproject.org/files/ENCFF929VCS/@@download/ENCFF929VCS.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF774XDZ bed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 4969323 ENCODE Processing Pipeline 0d0b75976b8190930d366d7494b4081d https://www.encodeproject.org/files/ENCFF774XDZ/@@download/ENCFF774XDZ.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF913KKV bigBed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF774XDZ 11194827 ENCODE Processing Pipeline 2b1cad6cfd64fa229222770ace26bfe0 https://www.encodeproject.org/files/ENCFF913KKV/@@download/ENCFF913KKV.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF806PDR bed narrowPeak optimal idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF774XDZ, ENCFF846ENI, ENCFF900XVJ 449965 ENCODE Processing Pipeline ea223ed654bbe195a05dedec31ac60cc https://www.encodeproject.org/files/ENCFF806PDR/@@download/ENCFF806PDR.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF535NUV bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF806PDR 837851 ENCODE Processing Pipeline 507e685ec82fbfb864d565ad591367b4 https://www.encodeproject.org/files/ENCFF535NUV/@@download/ENCFF535NUV.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF549UWI bigBed narrowPeak peaks and background as input for IDR ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF846ENI 10720309 ENCODE Processing Pipeline 54c5da06f301f1f768501f6cec7c6b9b https://www.encodeproject.org/files/ENCFF549UWI/@@download/ENCFF549UWI.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF565BAM fastq reads ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1512607497 Bing Ren, UCSD 9abd29ab8cdd983efae1791a67abfd86 SRA:SRR3653346 https://www.encodeproject.org/files/ENCFF565BAM/@@download/ENCFF565BAM.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF473KAE fastq reads ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1771909242 Bing Ren, UCSD e2d9bd2972857759a7dface76f794198 SRA:SRR3653345 https://www.encodeproject.org/files/ENCFF473KAE/@@download/ENCFF473KAE.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF293XKB bam alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF473KAE, ENCFF806TVZ 1518930935 ENCODE Processing Pipeline 2f8d4e5a5fe7630423362a74d6b5e0e3 https://www.encodeproject.org/files/ENCFF293XKB/@@download/ENCFF293XKB.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF460EIK bam alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF565BAM, ENCFF806TVZ 1229310132 ENCODE Processing Pipeline 6a059715b6b3e7e4658e63b6abf9ad60 https://www.encodeproject.org/files/ENCFF460EIK/@@download/ENCFF460EIK.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF565ZBJ bed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF460EIK, ENCFF476GUX 692997 ENCODE Processing Pipeline 93b50cc8c6554d0673d9c16dfa2fbc83 https://www.encodeproject.org/files/ENCFF565ZBJ/@@download/ENCFF565ZBJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF351LQA bed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF293XKB, ENCFF460EIK, ENCFF476GUX, ENCFF592WTG 976690 ENCODE Processing Pipeline 7c898bd0c9c96e111849cb71911b8e5a https://www.encodeproject.org/files/ENCFF351LQA/@@download/ENCFF351LQA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF563FEQ bed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF293XKB, ENCFF592WTG 892450 ENCODE Processing Pipeline 0742eaf69fed823cf4a24c3fee66f2c6 https://www.encodeproject.org/files/ENCFF563FEQ/@@download/ENCFF563FEQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF158GET bigBed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF565ZBJ 2223978 ENCODE Processing Pipeline 503e85e99e4d7c4d3eefbe1d3cf3d28d https://www.encodeproject.org/files/ENCFF158GET/@@download/ENCFF158GET.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF943LVZ bigBed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF351LQA 2960166 ENCODE Processing Pipeline 8e8f70affa4736d0690f6c33afd2eef1 https://www.encodeproject.org/files/ENCFF943LVZ/@@download/ENCFF943LVZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF173OIG bigBed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF563FEQ 2256322 ENCODE Processing Pipeline cd03f3a8888f168d500f51cdc81ac4b7 https://www.encodeproject.org/files/ENCFF173OIG/@@download/ENCFF173OIG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF975UVR bigWig signal p-value ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF293XKB, ENCFF592WTG 480698094 ENCODE Processing Pipeline 5cd3e646c88bf80b79e270389ed12ae7 https://www.encodeproject.org/files/ENCFF975UVR/@@download/ENCFF975UVR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF339MML bigWig signal p-value ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF460EIK, ENCFF476GUX 579219548 ENCODE Processing Pipeline 7f55cbad616a111cc2c244a920ff31d3 https://www.encodeproject.org/files/ENCFF339MML/@@download/ENCFF339MML.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF552BPD bigWig signal p-value ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF293XKB, ENCFF460EIK, ENCFF476GUX, ENCFF592WTG 743909538 ENCODE Processing Pipeline 49d6143d78cfe34c1fb4cd2b5a993e0a https://www.encodeproject.org/files/ENCFF552BPD/@@download/ENCFF552BPD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF125GOB bigWig fold change over control ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF293XKB, ENCFF592WTG 605364543 ENCODE Processing Pipeline 6147c8948f536071a4d93ce66323bc1f https://www.encodeproject.org/files/ENCFF125GOB/@@download/ENCFF125GOB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF875ECE bigWig fold change over control ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF460EIK, ENCFF476GUX 521990066 ENCODE Processing Pipeline 14e60a94496ac644613d56946110dc17 https://www.encodeproject.org/files/ENCFF875ECE/@@download/ENCFF875ECE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF391LSA bigWig fold change over control ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF293XKB, ENCFF460EIK, ENCFF476GUX, ENCFF592WTG 1029276443 ENCODE Processing Pipeline 6db9d13ba21176606259c7216a011ca0 https://www.encodeproject.org/files/ENCFF391LSA/@@download/ENCFF391LSA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF358QLJ bigBed narrowPeak replicated peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF766QUE 1580152 ENCODE Processing Pipeline 43515367fa16213d6b734baefbed6a67 https://www.encodeproject.org/files/ENCFF358QLJ/@@download/ENCFF358QLJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF766QUE bed narrowPeak replicated peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF351LQA, ENCFF563FEQ, ENCFF565ZBJ 644021 ENCODE Processing Pipeline af99d227f43d922aa1a4d3908eb7c015 https://www.encodeproject.org/files/ENCFF766QUE/@@download/ENCFF766QUE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF281QMB bam unfiltered alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF565BAM 1821457831 ENCODE Processing Pipeline 07151667ac59b244c91bfedb8acebdb6 https://www.encodeproject.org/files/ENCFF281QMB/@@download/ENCFF281QMB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF882XHL bam unfiltered alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF473KAE 2145985498 ENCODE Processing Pipeline 83de35b1270d013d8c1c9a465b362d94 https://www.encodeproject.org/files/ENCFF882XHL/@@download/ENCFF882XHL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF598XGJ bam alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF565BAM 1229026599 ENCODE Processing Pipeline 2604fc816f7ad73bd18d944d4f4e3fd9 https://www.encodeproject.org/files/ENCFF598XGJ/@@download/ENCFF598XGJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF104RYN bam alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF473KAE 1518577797 ENCODE Processing Pipeline b97bc225783f9d8e0cfa33c32b983899 https://www.encodeproject.org/files/ENCFF104RYN/@@download/ENCFF104RYN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF792AFF bed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF104RYN, ENCFF627RIT 850101 ENCODE Processing Pipeline 04b4926ead32b483ae2096161bfec199 https://www.encodeproject.org/files/ENCFF792AFF/@@download/ENCFF792AFF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF439MTD bed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF104RYN, ENCFF285XPR, ENCFF598XGJ, ENCFF627RIT 994797 ENCODE Processing Pipeline 82dbe88a9b019b661efb6a97052633ad https://www.encodeproject.org/files/ENCFF439MTD/@@download/ENCFF439MTD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF172TSI bed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF598XGJ 694758 ENCODE Processing Pipeline f726fabff58a7d750f7b2689cd325a22 https://www.encodeproject.org/files/ENCFF172TSI/@@download/ENCFF172TSI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF785JSN bigBed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF792AFF 2167583 ENCODE Processing Pipeline 4fced3c63abbbfc5d363617ccbb0fc4f https://www.encodeproject.org/files/ENCFF785JSN/@@download/ENCFF785JSN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF543ISZ bigBed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF172TSI 2217275 ENCODE Processing Pipeline b1ef7482bf1cf763a566acdf831f944f https://www.encodeproject.org/files/ENCFF543ISZ/@@download/ENCFF543ISZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF165WXP bigWig signal p-value ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF104RYN, ENCFF627RIT 530354259 ENCODE Processing Pipeline faff50607eece5c427eeacfbf51ea82f https://www.encodeproject.org/files/ENCFF165WXP/@@download/ENCFF165WXP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF787XCN bigBed narrowPeak peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF439MTD 3007344 ENCODE Processing Pipeline d146add743fced22093a4e96ff142d7b https://www.encodeproject.org/files/ENCFF787XCN/@@download/ENCFF787XCN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF367FYS bigWig signal p-value ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF598XGJ 575891247 ENCODE Processing Pipeline 903ae3fb4882aff217a09b80d8d03864 https://www.encodeproject.org/files/ENCFF367FYS/@@download/ENCFF367FYS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF618AAX bigWig signal p-value ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF104RYN, ENCFF285XPR, ENCFF598XGJ, ENCFF627RIT 1157336675 ENCODE Processing Pipeline 054753bd94a6cbdde40474fc901f3343 https://www.encodeproject.org/files/ENCFF618AAX/@@download/ENCFF618AAX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF960VAM bigWig fold change over control ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF104RYN, ENCFF627RIT 631479598 ENCODE Processing Pipeline 8a5b333f96adefe9ba8a3c32ada58bbb https://www.encodeproject.org/files/ENCFF960VAM/@@download/ENCFF960VAM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF785XTB bigWig fold change over control ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF598XGJ 557763433 ENCODE Processing Pipeline 3540dada86c18b3941e6fe64f967c68a https://www.encodeproject.org/files/ENCFF785XTB/@@download/ENCFF785XTB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF420WNH bigWig fold change over control ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF104RYN, ENCFF285XPR, ENCFF598XGJ, ENCFF627RIT 1129271030 ENCODE Processing Pipeline 65f4c2900973180a01283f3d03e02aa0 https://www.encodeproject.org/files/ENCFF420WNH/@@download/ENCFF420WNH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF529SOW bed narrowPeak replicated peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF172TSI, ENCFF439MTD, ENCFF792AFF 651172 ENCODE Processing Pipeline f2cf2ed0684a7a780d5068b741558c29 https://www.encodeproject.org/files/ENCFF529SOW/@@download/ENCFF529SOW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF750MLD bigBed narrowPeak replicated peaks ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF529SOW 1583256 ENCODE Processing Pipeline b358a47ec78351c5506317149836cdef https://www.encodeproject.org/files/ENCFF750MLD/@@download/ENCFF750MLD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001KHB bigBed broadPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXF 425192 Bing Ren, UCSD 8fcdee82b0e0a9e10be451d22d753c24 https://www.encodeproject.org/files/ENCFF001KHB/@@download/ENCFF001KHB.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KHC bam alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KHK 830355825 Bing Ren, UCSD cc3ef567974c3a1da2c493088f9f92e9 https://www.encodeproject.org/files/ENCFF001KHC/@@download/ENCFF001KHC.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KHD bigWig signal ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KHC, ENCFF001KHE 70465779 Bing Ren, UCSD 77b6af3285a95035814aeb19bef93f33 https://www.encodeproject.org/files/ENCFF001KHD/@@download/ENCFF001KHD.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KHE bam alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KHO 1539408351 Bing Ren, UCSD 8db11fa5189d63cfd0ef2e6f92904647 https://www.encodeproject.org/files/ENCFF001KHE/@@download/ENCFF001KHE.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KHK fastq reads ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 800421354 Bing Ren, UCSD 3c6f873d98118b64b76b9b845ce6d056 https://www.encodeproject.org/files/ENCFF001KHK/@@download/ENCFF001KHK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KHO fastq reads ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 50 single-ended 1523036209 Bing Ren, UCSD 3ae82c8460bd788fd17947ddf6fd4a24 https://www.encodeproject.org/files/ENCFF001KHO/@@download/ENCFF001KHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIL/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001XXF bed broadPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KHC, ENCFF001KHE 266242 Bing Ren, UCSD 99e9aeb3cc0c35b14b5d7b0996acac7a https://www.encodeproject.org/files/ENCFF001XXF/@@download/ENCFF001XXF.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF534WDI bam unfiltered alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHK, ENCFF018NEO 911751947 ENCODE Processing Pipeline 07b7e93e3861f6908ab4b53091b40c46 https://www.encodeproject.org/files/ENCFF534WDI/@@download/ENCFF534WDI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF494EHR bam alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHK, ENCFF018NEO 550888113 ENCODE Processing Pipeline 02c54441481cbd4ff6d5e2592dc3a9ba https://www.encodeproject.org/files/ENCFF494EHR/@@download/ENCFF494EHR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF850OMD bed narrowPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF494EHR 1043366 ENCODE Processing Pipeline 3ce85c05d80c257c46c5315a497168c6 https://www.encodeproject.org/files/ENCFF850OMD/@@download/ENCFF850OMD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF771FLA bigBed narrowPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF850OMD 2807575 ENCODE Processing Pipeline 3044080b1405cc8a71671627190146c4 https://www.encodeproject.org/files/ENCFF771FLA/@@download/ENCFF771FLA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF568YRA bigWig signal p-value ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF494EHR 341052766 ENCODE Processing Pipeline 7d27262b1fca186a1f5656f3b33d4504 https://www.encodeproject.org/files/ENCFF568YRA/@@download/ENCFF568YRA.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF311SRD bigWig fold change over control ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF494EHR 273233395 ENCODE Processing Pipeline c423d9a54955b61e567bab6b91043a6c https://www.encodeproject.org/files/ENCFF311SRD/@@download/ENCFF311SRD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF115OEV bam unfiltered alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHO, ENCFF018NEO 1351320572 ENCODE Processing Pipeline 0ba58239f98a6cad0fc3ee0db67ba3dd https://www.encodeproject.org/files/ENCFF115OEV/@@download/ENCFF115OEV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF044QFP bam alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHO, ENCFF018NEO 848068980 ENCODE Processing Pipeline 75ae4b86f302f1e470b7d25e2bf45ed1 https://www.encodeproject.org/files/ENCFF044QFP/@@download/ENCFF044QFP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF307SSB bed narrowPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF044QFP, ENCFF262EEH, ENCFF465PJQ 389912 ENCODE Processing Pipeline 9e55f99eec656d7a5aa820192e7089c7 https://www.encodeproject.org/files/ENCFF307SSB/@@download/ENCFF307SSB.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF532GSK bed narrowPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF044QFP, ENCFF262EEH, ENCFF465PJQ, ENCFF494EHR 372652 ENCODE Processing Pipeline 1167c962912d195da42fddcbda55f507 https://www.encodeproject.org/files/ENCFF532GSK/@@download/ENCFF532GSK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF564SME bigBed narrowPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF307SSB 1007616 ENCODE Processing Pipeline 527c9c29d84a256ea269dbb3877666aa https://www.encodeproject.org/files/ENCFF564SME/@@download/ENCFF564SME.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF495IPO bigBed narrowPeak peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF532GSK 1033096 ENCODE Processing Pipeline 7237715043cd5acd2ce1cab039cd3449 https://www.encodeproject.org/files/ENCFF495IPO/@@download/ENCFF495IPO.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF072XXZ bigWig signal p-value ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF044QFP, ENCFF262EEH, ENCFF465PJQ 385733176 ENCODE Processing Pipeline daa1f7ca339cbd102d639a30fb34e9aa https://www.encodeproject.org/files/ENCFF072XXZ/@@download/ENCFF072XXZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF344SFV bigWig fold change over control ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF044QFP, ENCFF262EEH, ENCFF465PJQ, ENCFF494EHR 539634529 ENCODE Processing Pipeline 3b145e54ce722118dc1a5d938df1bfab https://www.encodeproject.org/files/ENCFF344SFV/@@download/ENCFF344SFV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF668KTU bigWig fold change over control ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF044QFP, ENCFF262EEH, ENCFF465PJQ 375121921 ENCODE Processing Pipeline b14978bc2b391a1d2cb6edcb21bd64d8 https://www.encodeproject.org/files/ENCFF668KTU/@@download/ENCFF668KTU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF963KMF bigBed narrowPeak replicated peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF887SZF 738267 ENCODE Processing Pipeline 56ddec9f13f63337e039d53ee3fc4a3e https://www.encodeproject.org/files/ENCFF963KMF/@@download/ENCFF963KMF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF066PZH bigWig signal p-value ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF044QFP, ENCFF262EEH, ENCFF465PJQ, ENCFF494EHR 399930714 ENCODE Processing Pipeline b1e5fbcad5972f619c1b42226b188702 https://www.encodeproject.org/files/ENCFF066PZH/@@download/ENCFF066PZH.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF887SZF bed narrowPeak replicated peaks ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF307SSB, ENCFF532GSK, ENCFF850OMD 313201 ENCODE Processing Pipeline fe46f3d8770f604b0175a22198e95cbc https://www.encodeproject.org/files/ENCFF887SZF/@@download/ENCFF887SZF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF858IYQ fastq reads ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2036319065 Bing Ren, UCSD 1d93789c06554f29e2e071c45afe12eb SRA:SRR3653341 https://www.encodeproject.org/files/ENCFF858IYQ/@@download/ENCFF858IYQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released inconsistent platforms ENCFF003TMP fastq reads ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2261046804 Bing Ren, UCSD 2815647173339fe6485844d89131d036 SRA:SRR3653342 https://www.encodeproject.org/files/ENCFF003TMP/@@download/ENCFF003TMP.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released inconsistent platforms ENCFF452XOH bam alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF003TMP, ENCFF806TVZ 1862093028 ENCODE Processing Pipeline 84371fce8a6bf1f1eb26431c67269fa4 https://www.encodeproject.org/files/ENCFF452XOH/@@download/ENCFF452XOH.bam mm10-minimal archived inconsistent platforms ENCFF879KNM bam alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF858IYQ 1651097510 ENCODE Processing Pipeline b9e322790028950ef435cadd60c85c5c https://www.encodeproject.org/files/ENCFF879KNM/@@download/ENCFF879KNM.bam mm10-minimal archived inconsistent platforms ENCFF888KBP bed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF241ENQ, ENCFF879KNM 869285 ENCODE Processing Pipeline 6516f82fd73d18b13b91b9a4ff1b28b4 https://www.encodeproject.org/files/ENCFF888KBP/@@download/ENCFF888KBP.bed.gz mm10-minimal archived inconsistent platforms ENCFF099SLC bed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF452XOH 957566 ENCODE Processing Pipeline 0864f2f68df7b883da603cf6826da108 https://www.encodeproject.org/files/ENCFF099SLC/@@download/ENCFF099SLC.bed.gz mm10-minimal archived inconsistent platforms ENCFF563WWM bed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF452XOH, ENCFF879KNM 1162471 ENCODE Processing Pipeline b791f2c49eeba28c4d9938212ae92a65 https://www.encodeproject.org/files/ENCFF563WWM/@@download/ENCFF563WWM.bed.gz mm10-minimal archived inconsistent platforms ENCFF224VIP bigBed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF888KBP 2718001 ENCODE Processing Pipeline b49a2cd99a9250e130c60c91cc3d4f7d https://www.encodeproject.org/files/ENCFF224VIP/@@download/ENCFF224VIP.bigBed mm10-minimal archived inconsistent platforms ENCFF402IJM bigBed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF099SLC 2983357 ENCODE Processing Pipeline eee74035816a6b0c05b53a85a2122c6b https://www.encodeproject.org/files/ENCFF402IJM/@@download/ENCFF402IJM.bigBed mm10-minimal archived inconsistent platforms ENCFF916MDK bigBed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF563WWM 3423200 ENCODE Processing Pipeline 2cca3ea2c2c9e63c1f92c4666237bd31 https://www.encodeproject.org/files/ENCFF916MDK/@@download/ENCFF916MDK.bigBed mm10-minimal archived inconsistent platforms ENCFF961FZX bigWig signal p-value ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF241ENQ, ENCFF879KNM 542615574 ENCODE Processing Pipeline dae9b9de72cc6ffd632b70b55dafc894 https://www.encodeproject.org/files/ENCFF961FZX/@@download/ENCFF961FZX.bigWig mm10-minimal archived inconsistent platforms ENCFF461FEM bigWig signal p-value ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF452XOH 587419979 ENCODE Processing Pipeline c7630fe1b897531edaeca276a5393cae https://www.encodeproject.org/files/ENCFF461FEM/@@download/ENCFF461FEM.bigWig mm10-minimal archived inconsistent platforms ENCFF874RTW bigWig signal p-value ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF452XOH, ENCFF879KNM 1196202095 ENCODE Processing Pipeline 247b6adaa47ab22a302bcb753c729d89 https://www.encodeproject.org/files/ENCFF874RTW/@@download/ENCFF874RTW.bigWig mm10-minimal archived inconsistent platforms ENCFF677IYL bigWig fold change over control ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF241ENQ, ENCFF879KNM 649336009 ENCODE Processing Pipeline 5fda60403b726ab0af2d8a5ff709b7c7 https://www.encodeproject.org/files/ENCFF677IYL/@@download/ENCFF677IYL.bigWig mm10-minimal archived inconsistent platforms ENCFF626AAY bigWig fold change over control ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF452XOH 711902036 ENCODE Processing Pipeline 949baed5a5bdd80fd3702f852c37a02e https://www.encodeproject.org/files/ENCFF626AAY/@@download/ENCFF626AAY.bigWig mm10-minimal archived inconsistent platforms ENCFF515OVW bigWig fold change over control ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF452XOH, ENCFF879KNM 1269840962 ENCODE Processing Pipeline 4a25f13b20fd8c77ad82bb373433bd4e https://www.encodeproject.org/files/ENCFF515OVW/@@download/ENCFF515OVW.bigWig mm10-minimal archived inconsistent platforms ENCFF922QKE bigBed narrowPeak replicated peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF729SYP 1881920 ENCODE Processing Pipeline 03763183647c427edf18e795ae1a675f https://www.encodeproject.org/files/ENCFF922QKE/@@download/ENCFF922QKE.bigBed mm10-minimal archived inconsistent platforms ENCFF729SYP bed narrowPeak replicated peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF099SLC, ENCFF563WWM, ENCFF888KBP 835659 ENCODE Processing Pipeline 0fc4029fb023c7f95da4ec7498b04021 https://www.encodeproject.org/files/ENCFF729SYP/@@download/ENCFF729SYP.bed.gz mm10-minimal archived inconsistent platforms ENCFF614LRY bam unfiltered alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF858IYQ 2430067229 ENCODE Processing Pipeline 4d934983dca28dc9c5ea3079c982450a https://www.encodeproject.org/files/ENCFF614LRY/@@download/ENCFF614LRY.bam mm10 released inconsistent platforms ENCFF263YBK bam unfiltered alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF003TMP, ENCFF018NEO 2703990220 ENCODE Processing Pipeline 9bba1f84ae77832f94571166de240bf8 https://www.encodeproject.org/files/ENCFF263YBK/@@download/ENCFF263YBK.bam mm10 released inconsistent platforms ENCFF318FYW bam alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF003TMP, ENCFF018NEO 1861661078 ENCODE Processing Pipeline f116838115ac4e81e77eabe4e13da3b8 https://www.encodeproject.org/files/ENCFF318FYW/@@download/ENCFF318FYW.bam mm10 released inconsistent platforms ENCFF057ELO bam alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF858IYQ 1650729150 ENCODE Processing Pipeline cf0edc99a4307e6d4385bea64552ba57 https://www.encodeproject.org/files/ENCFF057ELO/@@download/ENCFF057ELO.bam mm10 released inconsistent platforms ENCFF229LGI bed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057ELO, ENCFF487AIV 884097 ENCODE Processing Pipeline bd6e5aad0a3b8a3703f5a06962469127 https://www.encodeproject.org/files/ENCFF229LGI/@@download/ENCFF229LGI.bed.gz mm10 released inconsistent platforms ENCFF275YCO bed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057ELO, ENCFF318FYW, ENCFF487AIV, ENCFF642FOT 1123531 ENCODE Processing Pipeline d749b39e72b47e51805a528cc96ddf6d https://www.encodeproject.org/files/ENCFF275YCO/@@download/ENCFF275YCO.bed.gz mm10 released inconsistent platforms ENCFF003NMT bed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF318FYW, ENCFF642FOT 920923 ENCODE Processing Pipeline 16ccd9867d8371304555ccf38ec33b49 https://www.encodeproject.org/files/ENCFF003NMT/@@download/ENCFF003NMT.bed.gz mm10 released inconsistent platforms ENCFF969QAZ bigBed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF229LGI 2757379 ENCODE Processing Pipeline f0f4cb8c366e94b61ea4888fd6b926f9 https://www.encodeproject.org/files/ENCFF969QAZ/@@download/ENCFF969QAZ.bigBed mm10 released inconsistent platforms ENCFF983MYY bigBed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF003NMT 2867142 ENCODE Processing Pipeline ba0f918cd3c891a6385f633b95c8affd https://www.encodeproject.org/files/ENCFF983MYY/@@download/ENCFF983MYY.bigBed mm10 released inconsistent platforms ENCFF292VNT bigBed narrowPeak peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF275YCO 3304376 ENCODE Processing Pipeline aabcaf379dcf7bed422754376dbbef69 https://www.encodeproject.org/files/ENCFF292VNT/@@download/ENCFF292VNT.bigBed mm10 released inconsistent platforms ENCFF303GGG bigWig signal p-value ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057ELO, ENCFF487AIV 621408409 ENCODE Processing Pipeline 86dee05da4d43ee5a4e17574ee00df97 https://www.encodeproject.org/files/ENCFF303GGG/@@download/ENCFF303GGG.bigWig mm10 released inconsistent platforms ENCFF382NCG bigWig signal p-value ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF318FYW, ENCFF642FOT 696197746 ENCODE Processing Pipeline 09b0a113f86c2c3da83abdf2dee38f00 https://www.encodeproject.org/files/ENCFF382NCG/@@download/ENCFF382NCG.bigWig mm10 released inconsistent platforms ENCFF538HOI bigWig signal p-value ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057ELO, ENCFF318FYW, ENCFF487AIV, ENCFF642FOT 1103384778 ENCODE Processing Pipeline 886a40432ff5361688a1ada2c40ca6fa https://www.encodeproject.org/files/ENCFF538HOI/@@download/ENCFF538HOI.bigWig mm10 released inconsistent platforms ENCFF783WBH bigWig fold change over control ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057ELO, ENCFF487AIV 693476104 ENCODE Processing Pipeline 48f0c647d376e0d01172e263cd29d496 https://www.encodeproject.org/files/ENCFF783WBH/@@download/ENCFF783WBH.bigWig mm10 released inconsistent platforms ENCFF067WGJ bigWig fold change over control ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF318FYW, ENCFF642FOT 725811084 ENCODE Processing Pipeline 8849e39a65d8fda1dd764f79104bb748 https://www.encodeproject.org/files/ENCFF067WGJ/@@download/ENCFF067WGJ.bigWig mm10 released inconsistent platforms ENCFF802SIF bigWig fold change over control ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057ELO, ENCFF318FYW, ENCFF487AIV, ENCFF642FOT 1320076397 ENCODE Processing Pipeline 73c8ef62ff807eb71f9ff0e1e031f42f https://www.encodeproject.org/files/ENCFF802SIF/@@download/ENCFF802SIF.bigWig mm10 released inconsistent platforms ENCFF435FFR bed narrowPeak replicated peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF003NMT, ENCFF229LGI, ENCFF275YCO 856183 ENCODE Processing Pipeline de8dc565c6ca6a985609e1a73b28f478 https://www.encodeproject.org/files/ENCFF435FFR/@@download/ENCFF435FFR.bed.gz mm10 released inconsistent platforms ENCFF537HIO bigBed narrowPeak replicated peaks ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF435FFR 1920393 ENCODE Processing Pipeline cfd373228a2a846a3a73e775545d297c https://www.encodeproject.org/files/ENCFF537HIO/@@download/ENCFF537HIO.bigBed mm10 released inconsistent platforms ENCFF002APU fastq reads ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1301223463 Bing Ren, UCSD 7c274db11b78ebcbb183f3e19220a919 SRA:SRR3653111 https://www.encodeproject.org/files/ENCFF002APU/@@download/ENCFF002APU.fastq.gz Illumina HiSeq 2000 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF002APV fastq reads ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1573944785 Bing Ren, UCSD c7de1f119f2ab28003a4fc23e851f077 SRA:SRR3653110 https://www.encodeproject.org/files/ENCFF002APV/@@download/ENCFF002APV.fastq.gz Illumina HiSeq 2000 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF074NEY bam unfiltered alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APV, ENCFF806TVZ 1758010671 ENCODE Processing Pipeline a9fe9e85e5dfd041521f90f344957ac0 https://www.encodeproject.org/files/ENCFF074NEY/@@download/ENCFF074NEY.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF423BIC bam unfiltered alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APU, ENCFF806TVZ 1402747969 ENCODE Processing Pipeline b0c48b06d77e1fc434054ca5a77a92a1 https://www.encodeproject.org/files/ENCFF423BIC/@@download/ENCFF423BIC.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF025NCO bam alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APV, ENCFF806TVZ 1260837958 ENCODE Processing Pipeline a149f300c264b0c693a0a3aa84bb9238 https://www.encodeproject.org/files/ENCFF025NCO/@@download/ENCFF025NCO.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF228INH bam alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APU, ENCFF806TVZ 866206502 ENCODE Processing Pipeline 9d8551af1b1e57229a8cbbcf59571f34 https://www.encodeproject.org/files/ENCFF228INH/@@download/ENCFF228INH.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF542YWS bam unfiltered alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APU, ENCFF018NEO 1404868331 ENCODE Processing Pipeline 52174f46563442330f582decd20f17b9 https://www.encodeproject.org/files/ENCFF542YWS/@@download/ENCFF542YWS.bam mm10 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF396CVK bam alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APU, ENCFF018NEO 865960078 ENCODE Processing Pipeline 96544b667470d3eabb3a374557fd328d https://www.encodeproject.org/files/ENCFF396CVK/@@download/ENCFF396CVK.bam mm10 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF295HNV bam unfiltered alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APV, ENCFF018NEO 1445332077 ENCODE Processing Pipeline 2e63ce81ae87fb27d04b9842bafe6a34 https://www.encodeproject.org/files/ENCFF295HNV/@@download/ENCFF295HNV.bam mm10 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF506NSJ bam alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APV, ENCFF018NEO 967743920 ENCODE Processing Pipeline 431ef5ec8b61217a974a4862a064f1c7 https://www.encodeproject.org/files/ENCFF506NSJ/@@download/ENCFF506NSJ.bam mm10 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF002AQK fastq reads ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1206011443 Bing Ren, UCSD 6ef21b17b4b8c0cfb528700069390e5a SRA:SRR3652043 https://www.encodeproject.org/files/ENCFF002AQK/@@download/ENCFF002AQK.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF002AQM fastq reads ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1264495124 Bing Ren, UCSD 335a964fb269a2b3471deb69966cada1 SRA:SRR3652042 https://www.encodeproject.org/files/ENCFF002AQM/@@download/ENCFF002AQM.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF501NQY bam unfiltered alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQM, ENCFF806TVZ 1513411038 ENCODE Processing Pipeline db62c980402472ad5e399fd3cca4ebdc https://www.encodeproject.org/files/ENCFF501NQY/@@download/ENCFF501NQY.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF056VUI bam unfiltered alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQK, ENCFF806TVZ 1441538305 ENCODE Processing Pipeline 6e571d8b6423cc6dccd551c3c9bc67f2 https://www.encodeproject.org/files/ENCFF056VUI/@@download/ENCFF056VUI.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF988JQL bam alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQK, ENCFF806TVZ 929956879 ENCODE Processing Pipeline 750a4e4cd8dac7009f086362f0bb9f13 https://www.encodeproject.org/files/ENCFF988JQL/@@download/ENCFF988JQL.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF790TLG bam alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQM, ENCFF806TVZ 991448342 ENCODE Processing Pipeline 6db8a65f8f77ab3946aec77ee70da8eb https://www.encodeproject.org/files/ENCFF790TLG/@@download/ENCFF790TLG.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF018XST bam unfiltered alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQM, ENCFF018NEO 1515236206 ENCODE Processing Pipeline f4baf263bb1ac46c86204f7452a1ce98 https://www.encodeproject.org/files/ENCFF018XST/@@download/ENCFF018XST.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF920BJL bam unfiltered alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQK, ENCFF018NEO 1443390019 ENCODE Processing Pipeline a66e59210e735682738744e0c4b9090b https://www.encodeproject.org/files/ENCFF920BJL/@@download/ENCFF920BJL.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF621MOH bam alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQM, ENCFF018NEO 991133680 ENCODE Processing Pipeline ef0277730c93ac48e777ac1e5c9fc932 https://www.encodeproject.org/files/ENCFF621MOH/@@download/ENCFF621MOH.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF568CQH bam alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQK, ENCFF018NEO 929637287 ENCODE Processing Pipeline 5df8baf050aef4dc04d294721f2cf4bb https://www.encodeproject.org/files/ENCFF568CQH/@@download/ENCFF568CQH.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF001MLP bam alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MLS 712254956 Ross Hardison, PennState e2b2b0486d847d87ec1f21a5df543249 https://www.encodeproject.org/files/ENCFF001MLP/@@download/ENCFF001MLP.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MLR bigWig signal ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1109820694 Ross Hardison, PennState a02c9860c09456e200ec00fbed66b503 https://www.encodeproject.org/files/ENCFF001MLR/@@download/ENCFF001MLR.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MLS fastq reads ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 36 single-ended 602777567 Ross Hardison, PennState 4b6252f55ac1a7b6bbe2dbc27e087480 https://www.encodeproject.org/files/ENCFF001MLS/@@download/ENCFF001MLS.fastq.gz Illumina Genome Analyzer IIx released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MLT bigWig signal ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5777705499 Ross Hardison, PennState f3da921afc1b1c1261153355a9d4fa57 https://www.encodeproject.org/files/ENCFF001MLT/@@download/ENCFF001MLT.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MLU bam alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MLY 7014680656 Ross Hardison, PennState 66f0fd9f67b84f4e94ce2c550807b796 https://www.encodeproject.org/files/ENCFF001MLU/@@download/ENCFF001MLU.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001MLV bigWig signal ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 6126283456 Ross Hardison, PennState fe9c00a1e26cda9b6f62815981c71d52 https://www.encodeproject.org/files/ENCFF001MLV/@@download/ENCFF001MLV.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MLY fastq reads ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 5981948046 Ross Hardison, PennState 1dc3103f90630dfc1403294238976bb7 https://www.encodeproject.org/files/ENCFF001MLY/@@download/ENCFF001MLY.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF028LFV bam unfiltered alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MLY, ENCFF516HDY 7205003947 J. Michael Cherry, Stanford cafb2948c7b80131d6c20db4a275d065 https://www.encodeproject.org/files/ENCFF028LFV/@@download/ENCFF028LFV.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF440OBM bam unfiltered alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MLS, ENCFF516HDY 749516305 J. Michael Cherry, Stanford 355edc3ad3e16c0fae293800d246152e https://www.encodeproject.org/files/ENCFF440OBM/@@download/ENCFF440OBM.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF080XIS bam unfiltered alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MLS, ENCFF018NEO 750859178 ENCODE Processing Pipeline c4a78a6377e732e347804b591fb01c30 https://www.encodeproject.org/files/ENCFF080XIS/@@download/ENCFF080XIS.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF867VYO bam alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MLS, ENCFF018NEO 557658280 ENCODE Processing Pipeline 3c8a5d4c6d5fee1154ac6cd840ee8f0c https://www.encodeproject.org/files/ENCFF867VYO/@@download/ENCFF867VYO.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF318FKF bam alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MLY, ENCFF018NEO 4081901005 ENCODE Processing Pipeline bf2c8f819d7b3de25f4ec0dca5c8a5df https://www.encodeproject.org/files/ENCFF318FKF/@@download/ENCFF318FKF.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF034BAJ bam unfiltered alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MLY, ENCFF018NEO 5743718241 ENCODE Processing Pipeline 10ad5270433d733a6c22597395725e1f https://www.encodeproject.org/files/ENCFF034BAJ/@@download/ENCFF034BAJ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001NYT bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NZU 428534595 Michael Snyder, Stanford bbc6aefbe859e2dcfd586662c2c94c4c https://www.encodeproject.org/files/ENCFF001NYT/@@download/ENCFF001NYT.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYU bigBed narrowPeak peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YKD 1919858 Michael Snyder, Stanford 479d779cfbf91117514e53474e8adb15 https://www.encodeproject.org/files/ENCFF001NYU/@@download/ENCFF001NYU.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYV bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NZS 384992633 Michael Snyder, Stanford eee68c1be782a21c903a65a4b79dc4c3 https://www.encodeproject.org/files/ENCFF001NYV/@@download/ENCFF001NYV.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYX bigWig signal ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NYT, ENCFF001NYV 302095275 Michael Snyder, Stanford 4dec4ade3d16e3da183af5f5e6d34296 https://www.encodeproject.org/files/ENCFF001NYX/@@download/ENCFF001NYX.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZS fastq reads ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 835436347 Michael Snyder, Stanford 3523e3c27d01397e59a374369a256e48 https://www.encodeproject.org/files/ENCFF001NZS/@@download/ENCFF001NZS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZU fastq reads ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 1048767076 Michael Snyder, Stanford dabb43efca28e1244177c31fcfa47aae https://www.encodeproject.org/files/ENCFF001NZU/@@download/ENCFF001NZU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKD bed narrowPeak peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NYT, ENCFF001NYV 923934 Michael Snyder, Stanford 4adf980933c4b4f3d9129b689101673a https://www.encodeproject.org/files/ENCFF001YKD/@@download/ENCFF001YKD.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF446AUK bam unfiltered alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NZS, ENCFF018NEO 946691106 ENCODE Processing Pipeline 6fe0bf38c3e2b2783eb7202c47e1df1f https://www.encodeproject.org/files/ENCFF446AUK/@@download/ENCFF446AUK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF432CAL bam unfiltered alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NZU, ENCFF018NEO 1183518221 ENCODE Processing Pipeline b4d084779f40c73508849eb2b796976d https://www.encodeproject.org/files/ENCFF432CAL/@@download/ENCFF432CAL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF924UTR bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NZS, ENCFF018NEO 552183629 ENCODE Processing Pipeline 0ab1bb640a289d746bbd0f9a795a733a https://www.encodeproject.org/files/ENCFF924UTR/@@download/ENCFF924UTR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF403JXO bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NZU, ENCFF018NEO 695761121 ENCODE Processing Pipeline de03dbb7d45c4e1ea7191c1801b343c4 https://www.encodeproject.org/files/ENCFF403JXO/@@download/ENCFF403JXO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF521KZY bigWig fold change over control ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF924UTR 263460607 ENCODE Processing Pipeline fa070e9e5384d080f3986896515d1900 https://www.encodeproject.org/files/ENCFF521KZY/@@download/ENCFF521KZY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF198FKD bigWig fold change over control ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF403JXO, ENCFF924UTR 466471795 ENCODE Processing Pipeline 1b65864d7417b7bf57b9c0bf0432423f https://www.encodeproject.org/files/ENCFF198FKD/@@download/ENCFF198FKD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF862HJU bigWig signal p-value ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF403JXO 325807403 ENCODE Processing Pipeline afabab781beae98492f9bec82e3dd420 https://www.encodeproject.org/files/ENCFF862HJU/@@download/ENCFF862HJU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF256IES bed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF924UTR 4529202 ENCODE Processing Pipeline 67793c73e29f70ea9950f710c396c55c https://www.encodeproject.org/files/ENCFF256IES/@@download/ENCFF256IES.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF416UPJ bigWig signal p-value ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF924UTR 322216041 ENCODE Processing Pipeline 3aff2ff597047bb6ef4b59e0095130c9 https://www.encodeproject.org/files/ENCFF416UPJ/@@download/ENCFF416UPJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF461XMN bigWig signal p-value ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF403JXO, ENCFF924UTR 319688208 ENCODE Processing Pipeline 8a04d9cb663c9e9a19956d4a05ac2004 https://www.encodeproject.org/files/ENCFF461XMN/@@download/ENCFF461XMN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF073YNV bigWig fold change over control ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF403JXO 295368621 ENCODE Processing Pipeline c83d54779b9ec6fee3fbe8959e64ec0c https://www.encodeproject.org/files/ENCFF073YNV/@@download/ENCFF073YNV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF216GFV bed narrowPeak conservative idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF213KTF, ENCFF256IES, ENCFF426BMQ, ENCFF547MET 497778 ENCODE Processing Pipeline 3ae82c4d34fe7984cadd246a6c257c55 https://www.encodeproject.org/files/ENCFF216GFV/@@download/ENCFF216GFV.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF213KTF bed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF403JXO, ENCFF924UTR 2448539 ENCODE Processing Pipeline 29fb5c93d92eec1b83bfd55f4aa5022c https://www.encodeproject.org/files/ENCFF213KTF/@@download/ENCFF213KTF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF877WYM bigBed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF256IES 10447877 ENCODE Processing Pipeline 99f42b7eb5e4838b2b69cab01b07d74f https://www.encodeproject.org/files/ENCFF877WYM/@@download/ENCFF877WYM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF426BMQ bed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF403JXO 4651431 ENCODE Processing Pipeline d63c1cb4bf163f7e82057d29abff7f60 https://www.encodeproject.org/files/ENCFF426BMQ/@@download/ENCFF426BMQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF808OSG bigBed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF426BMQ 10635809 ENCODE Processing Pipeline 9a93d14cf4e4cd4be6d1567b2313f384 https://www.encodeproject.org/files/ENCFF808OSG/@@download/ENCFF808OSG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF458IZV bigBed narrowPeak peaks and background as input for IDR ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF213KTF 5018455 ENCODE Processing Pipeline f9470216c2648f98a1bc4f86a0b9785c https://www.encodeproject.org/files/ENCFF458IZV/@@download/ENCFF458IZV.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF991KPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF216GFV 953571 ENCODE Processing Pipeline ab30e5ae92cb5f3bfa98dae42d065a19 https://www.encodeproject.org/files/ENCFF991KPV/@@download/ENCFF991KPV.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF021BHG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF946EZQ 1025322 ENCODE Processing Pipeline 6772255d26353674c0fbe85844ea83de https://www.encodeproject.org/files/ENCFF021BHG/@@download/ENCFF021BHG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF946EZQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF213KTF, ENCFF256IES, ENCFF426BMQ, ENCFF547MET 549585 ENCODE Processing Pipeline ea84c4721c69c7b5eb4e61e07f28cd9e https://www.encodeproject.org/files/ENCFF946EZQ/@@download/ENCFF946EZQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF002AIU fastq reads ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1334642342 Bing Ren, UCSD 0e79cb17bfe4ce6b6256b5e8f61da836 SRA:SRR3653320 https://www.encodeproject.org/files/ENCFF002AIU/@@download/ENCFF002AIU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARK/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AIY fastq reads ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1405934049 Bing Ren, UCSD 6f7f68939d29951f72218ed9664dc38f SRA:SRR3653321 https://www.encodeproject.org/files/ENCFF002AIY/@@download/ENCFF002AIY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARJ/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF726KMQ bam alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIU, ENCFF806TVZ 1022560028 ENCODE Processing Pipeline 24d589c1929432befc92cfa1fac2ae02 https://www.encodeproject.org/files/ENCFF726KMQ/@@download/ENCFF726KMQ.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF465YRG fastq reads ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 169514902 Bing Ren, UCSD 2ef052ca9a97b12da8443b8ae7ceeb4a SRA:SRR3653322 https://www.encodeproject.org/files/ENCFF465YRG/@@download/ENCFF465YRG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARJ/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF059XPQ bam alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIY, ENCFF465YRG, ENCFF806TVZ 1237785737 ENCODE Processing Pipeline d316c9fe8fecaee595f6c23d0de291e4 https://www.encodeproject.org/files/ENCFF059XPQ/@@download/ENCFF059XPQ.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF868WEW bigBed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF870PEM 5559234 ENCODE Processing Pipeline 63e0bf49f436d670d339a27eb7161072 https://www.encodeproject.org/files/ENCFF868WEW/@@download/ENCFF868WEW.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF830KLU bigBed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF894RXU 4761771 ENCODE Processing Pipeline 8c7297358793a305fe8e0abe9c7589bf https://www.encodeproject.org/files/ENCFF830KLU/@@download/ENCFF830KLU.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF894RXU bed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF726KMQ, ENCFF934LFS 2893431 ENCODE Processing Pipeline 047acee7cd660e146f21b9012e10abc5 https://www.encodeproject.org/files/ENCFF894RXU/@@download/ENCFF894RXU.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF670UZN bed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF059XPQ, ENCFF444YOE, ENCFF934LFS 2441435 ENCODE Processing Pipeline 6233f7ca2d30c20ad33519857c9d7ad4 https://www.encodeproject.org/files/ENCFF670UZN/@@download/ENCFF670UZN.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF870PEM bed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF059XPQ, ENCFF444YOE, ENCFF726KMQ, ENCFF934LFS 2565665 ENCODE Processing Pipeline e9b8170ca5472f1ff33d184174622c4d https://www.encodeproject.org/files/ENCFF870PEM/@@download/ENCFF870PEM.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF627JUX bigWig signal p-value ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF059XPQ, ENCFF444YOE, ENCFF934LFS 501882571 ENCODE Processing Pipeline 07d8bebfa032433338014f88d5a35631 https://www.encodeproject.org/files/ENCFF627JUX/@@download/ENCFF627JUX.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF783KBF bigBed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF670UZN 4340548 ENCODE Processing Pipeline 1d316bda3a6c442d997125557dbf41bc https://www.encodeproject.org/files/ENCFF783KBF/@@download/ENCFF783KBF.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF280YXQ bigWig signal p-value ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF726KMQ, ENCFF934LFS 484199908 ENCODE Processing Pipeline fdf9ccf77afb7529db2b76143f999a44 https://www.encodeproject.org/files/ENCFF280YXQ/@@download/ENCFF280YXQ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF298FMT bigWig fold change over control ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF726KMQ, ENCFF934LFS 448129529 ENCODE Processing Pipeline 138a0f72f9063241d8e8ed0530daec70 https://www.encodeproject.org/files/ENCFF298FMT/@@download/ENCFF298FMT.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF267AGA bigWig fold change over control ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF059XPQ, ENCFF444YOE, ENCFF934LFS 451226552 ENCODE Processing Pipeline a1984ca3ad61d26d434cbd7741868e87 https://www.encodeproject.org/files/ENCFF267AGA/@@download/ENCFF267AGA.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF422SHW bigWig signal p-value ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF059XPQ, ENCFF444YOE, ENCFF726KMQ, ENCFF934LFS 744041570 ENCODE Processing Pipeline daaddb64ce4f48b284ca9c6887dfb3aa https://www.encodeproject.org/files/ENCFF422SHW/@@download/ENCFF422SHW.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF401AWO bigWig fold change over control ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF059XPQ, ENCFF444YOE, ENCFF726KMQ, ENCFF934LFS 749084941 ENCODE Processing Pipeline 692d66e1bd27edb9d144495c194ef52f https://www.encodeproject.org/files/ENCFF401AWO/@@download/ENCFF401AWO.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF839YOP bed narrowPeak replicated peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF670UZN, ENCFF870PEM, ENCFF894RXU 1794816 ENCODE Processing Pipeline 2f0d1eab18f543c01324c41ce1f050f5 https://www.encodeproject.org/files/ENCFF839YOP/@@download/ENCFF839YOP.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF028DJF bigBed narrowPeak replicated peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF839YOP 3498564 ENCODE Processing Pipeline 12f5d3ab5241ec0fb2554ec4d629f86f https://www.encodeproject.org/files/ENCFF028DJF/@@download/ENCFF028DJF.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF634XGI bam unfiltered alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIY, ENCFF018NEO, ENCFF465YRG 1471655867 ENCODE Processing Pipeline 14bf553bfde5d3faa6e78d5f7c9cde1c https://www.encodeproject.org/files/ENCFF634XGI/@@download/ENCFF634XGI.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF093FKJ bam unfiltered alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIU, ENCFF018NEO 1603657359 ENCODE Processing Pipeline 35472e10bb27fb4a6aee2d292bab554d https://www.encodeproject.org/files/ENCFF093FKJ/@@download/ENCFF093FKJ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF235EMQ bam alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIY, ENCFF018NEO, ENCFF465YRG 959377957 ENCODE Processing Pipeline 76a8ceb1cb9d56d595b97245f6a73bcd https://www.encodeproject.org/files/ENCFF235EMQ/@@download/ENCFF235EMQ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF739AYO bam alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIU, ENCFF018NEO 1022272273 ENCODE Processing Pipeline 41851d525a3e900221591b09549caa87 https://www.encodeproject.org/files/ENCFF739AYO/@@download/ENCFF739AYO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF418EGG bed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF739AYO 2873708 ENCODE Processing Pipeline a237c1e462d5c1cbe22ec0fa493dd335 https://www.encodeproject.org/files/ENCFF418EGG/@@download/ENCFF418EGG.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF008JKE bed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF235EMQ, ENCFF319PHE, ENCFF681SBF 2329759 ENCODE Processing Pipeline 45aef691f346bfeeb122570bbc7a55a6 https://www.encodeproject.org/files/ENCFF008JKE/@@download/ENCFF008JKE.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF623CCW bed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF235EMQ, ENCFF319PHE, ENCFF681SBF, ENCFF739AYO 2517975 ENCODE Processing Pipeline 1f456b2e005ed80f7d64ce1f5a04da6f https://www.encodeproject.org/files/ENCFF623CCW/@@download/ENCFF623CCW.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF967CMA bigBed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF418EGG 4772140 ENCODE Processing Pipeline 68eb2691cb1e529a5e05480f89d98150 https://www.encodeproject.org/files/ENCFF967CMA/@@download/ENCFF967CMA.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF849LMH bigBed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF008JKE 4195196 ENCODE Processing Pipeline 8bdf9f767940dd71d4db98e0a522c051 https://www.encodeproject.org/files/ENCFF849LMH/@@download/ENCFF849LMH.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF650IZG bigBed narrowPeak peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF623CCW 5525205 ENCODE Processing Pipeline 5b28e95427d11b8b6ae902ab199942cc https://www.encodeproject.org/files/ENCFF650IZG/@@download/ENCFF650IZG.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF295ADQ bigWig signal p-value ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF739AYO 439901278 ENCODE Processing Pipeline 29d3467a734cdcc52784e2a6343bda20 https://www.encodeproject.org/files/ENCFF295ADQ/@@download/ENCFF295ADQ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF339EUL bigWig signal p-value ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF235EMQ, ENCFF319PHE, ENCFF681SBF 461883166 ENCODE Processing Pipeline e2db9224370482514613eb8d03ceda5a https://www.encodeproject.org/files/ENCFF339EUL/@@download/ENCFF339EUL.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF174IFQ bigWig signal p-value ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF235EMQ, ENCFF319PHE, ENCFF681SBF, ENCFF739AYO 733158166 ENCODE Processing Pipeline 453f163e79b9ba71e6c3acb38049c31f https://www.encodeproject.org/files/ENCFF174IFQ/@@download/ENCFF174IFQ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF139JSJ bigWig fold change over control ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF739AYO 463650356 ENCODE Processing Pipeline 5bac7babe0f6eac61440c630b0cf24c3 https://www.encodeproject.org/files/ENCFF139JSJ/@@download/ENCFF139JSJ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF928IEH bigWig fold change over control ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF235EMQ, ENCFF319PHE, ENCFF681SBF 445678565 ENCODE Processing Pipeline e9888ade9c6798d77f793de0683dc841 https://www.encodeproject.org/files/ENCFF928IEH/@@download/ENCFF928IEH.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF446FGV bigWig fold change over control ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF235EMQ, ENCFF319PHE, ENCFF681SBF, ENCFF739AYO 745630134 ENCODE Processing Pipeline 3d38bc79c0089c437e3e00f6003b035d https://www.encodeproject.org/files/ENCFF446FGV/@@download/ENCFF446FGV.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF373MCO bed narrowPeak replicated peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF008JKE, ENCFF418EGG, ENCFF623CCW 1741708 ENCODE Processing Pipeline c45ff4835cba73b50ac3d50e4ce08819 https://www.encodeproject.org/files/ENCFF373MCO/@@download/ENCFF373MCO.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF292KQK bigBed narrowPeak replicated peaks ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF373MCO 3403613 ENCODE Processing Pipeline c156285bfcd6924a93b698f8a7c4864b https://www.encodeproject.org/files/ENCFF292KQK/@@download/ENCFF292KQK.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF001ZTT fastq reads ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 976777062 Bing Ren, UCSD 2a0748287d5b35cf02fa21b50a00304d SRA:SRR3652349 https://www.encodeproject.org/files/ENCFF001ZTT/@@download/ENCFF001ZTT.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZTW fastq reads ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1027207365 Bing Ren, UCSD 0ccbcaf40d0abf135d60e4fa1acbd806 SRA:SRR3652351 https://www.encodeproject.org/files/ENCFF001ZTW/@@download/ENCFF001ZTW.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF826ZDX fastq reads ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 365169886 Bing Ren, UCSD eb4c0f59006ce129808f5455feab4383 SRA:SRR3652352 https://www.encodeproject.org/files/ENCFF826ZDX/@@download/ENCFF826ZDX.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF642PZF fastq reads ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 1053761693 Bing Ren, UCSD fb03b09220be91252bc874f76f59b6a1 SRA:SRR3652350 https://www.encodeproject.org/files/ENCFF642PZF/@@download/ENCFF642PZF.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF854GMO bam alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTT, ENCFF642PZF, ENCFF806TVZ 1408470859 ENCODE Processing Pipeline 04c8fed847c163eee90fa6cedae1a569 https://www.encodeproject.org/files/ENCFF854GMO/@@download/ENCFF854GMO.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF495EJO bam alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTW, ENCFF806TVZ, ENCFF826ZDX 1111526976 ENCODE Processing Pipeline 67e633a527ed00d35cac3238d9273ac2 https://www.encodeproject.org/files/ENCFF495EJO/@@download/ENCFF495EJO.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF283HYO bed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF854GMO, ENCFF972ZKQ 555428 ENCODE Processing Pipeline b90b217674d19286272e19ba5317eaf1 https://www.encodeproject.org/files/ENCFF283HYO/@@download/ENCFF283HYO.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF783YQU bigBed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF283HYO 1264862 ENCODE Processing Pipeline c2ebf22f29e795cf24575e4511688be9 https://www.encodeproject.org/files/ENCFF783YQU/@@download/ENCFF783YQU.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF662CBC bed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF495EJO, ENCFF972ZKQ 1305880 ENCODE Processing Pipeline 9b37352ea40947868bf5102953277c4c https://www.encodeproject.org/files/ENCFF662CBC/@@download/ENCFF662CBC.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF380TIP bed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF495EJO, ENCFF854GMO, ENCFF972ZKQ 568356 ENCODE Processing Pipeline 7de4f9dbfc59754f15462acfacf4fa26 https://www.encodeproject.org/files/ENCFF380TIP/@@download/ENCFF380TIP.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF751JZW bigBed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF380TIP 1490297 ENCODE Processing Pipeline 5ba5fd943ee90f3ff581e7c6e421b535 https://www.encodeproject.org/files/ENCFF751JZW/@@download/ENCFF751JZW.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF076HFF bigBed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF662CBC 2681408 ENCODE Processing Pipeline 16a8a614503e528bd9a6bae77fb895e1 https://www.encodeproject.org/files/ENCFF076HFF/@@download/ENCFF076HFF.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF742HRG bigWig signal p-value ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF854GMO, ENCFF972ZKQ 492825488 ENCODE Processing Pipeline 61a7b753aacc301dfe7a03abfa1a34dc https://www.encodeproject.org/files/ENCFF742HRG/@@download/ENCFF742HRG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF223HFZ bigWig signal p-value ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF495EJO, ENCFF972ZKQ 370386299 ENCODE Processing Pipeline 4a8a7e806d01bd046cf5b2175cd24617 https://www.encodeproject.org/files/ENCFF223HFZ/@@download/ENCFF223HFZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF253RRZ bigWig signal p-value ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF495EJO, ENCFF854GMO, ENCFF972ZKQ 498496260 ENCODE Processing Pipeline fec8affa3cf545ee23961a0781d8ddb8 https://www.encodeproject.org/files/ENCFF253RRZ/@@download/ENCFF253RRZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF860WQG bigWig fold change over control ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF854GMO, ENCFF972ZKQ 491841976 ENCODE Processing Pipeline 23288723f55e7e3556e17c26be3d87a9 https://www.encodeproject.org/files/ENCFF860WQG/@@download/ENCFF860WQG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF365VGW bigWig fold change over control ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF495EJO, ENCFF972ZKQ 440237260 ENCODE Processing Pipeline 46b080b7ed2e981a8b9f9dda21b3265b https://www.encodeproject.org/files/ENCFF365VGW/@@download/ENCFF365VGW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830EQU bigWig fold change over control ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF495EJO, ENCFF854GMO, ENCFF972ZKQ 751542654 ENCODE Processing Pipeline b6ea2d4dcb0610f6143c4f1a174f8d30 https://www.encodeproject.org/files/ENCFF830EQU/@@download/ENCFF830EQU.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF236BVG bed narrowPeak replicated peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF283HYO, ENCFF380TIP, ENCFF662CBC 575129 ENCODE Processing Pipeline c9a97c59b8e80c8b3951d69c69d659c3 https://www.encodeproject.org/files/ENCFF236BVG/@@download/ENCFF236BVG.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF125KFH bigBed narrowPeak replicated peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF236BVG 1316594 ENCODE Processing Pipeline 170677b1d132baa84d1ddc0f6a805fea https://www.encodeproject.org/files/ENCFF125KFH/@@download/ENCFF125KFH.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF151AJH bam unfiltered alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTT, ENCFF018NEO, ENCFF642PZF 2263423720 ENCODE Processing Pipeline 62e9b4410084fb26ce905dee9b91dba2 https://www.encodeproject.org/files/ENCFF151AJH/@@download/ENCFF151AJH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF240WME bam unfiltered alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTW, ENCFF018NEO, ENCFF826ZDX 1655788002 ENCODE Processing Pipeline 1debfdef840d15c5dfc604cea2d9bc22 https://www.encodeproject.org/files/ENCFF240WME/@@download/ENCFF240WME.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF965EGM bam alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTW, ENCFF018NEO, ENCFF826ZDX 1033099728 ENCODE Processing Pipeline e11195162720e82596e7d09a6bd26137 https://www.encodeproject.org/files/ENCFF965EGM/@@download/ENCFF965EGM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF970VYC bam alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTT, ENCFF018NEO, ENCFF642PZF 1187665135 ENCODE Processing Pipeline 6093f61f3411614f6e53f4ef6c8390e8 https://www.encodeproject.org/files/ENCFF970VYC/@@download/ENCFF970VYC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF555PNJ bed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF970VYC 536095 ENCODE Processing Pipeline 9338ee1f4e1e5ac944f40cba910d0ba3 https://www.encodeproject.org/files/ENCFF555PNJ/@@download/ENCFF555PNJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF839QAG bed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF965EGM 1341112 ENCODE Processing Pipeline 932db2b4dee6b8a11d8e036f25a23f85 https://www.encodeproject.org/files/ENCFF839QAG/@@download/ENCFF839QAG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF813TOY bed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF965EGM, ENCFF970VYC 559801 ENCODE Processing Pipeline 7357cf5ab6041b7b8a06c94251574a8a https://www.encodeproject.org/files/ENCFF813TOY/@@download/ENCFF813TOY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF147VQR bigBed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF555PNJ 1221110 ENCODE Processing Pipeline 21c4207c3de99c1f722023919c344688 https://www.encodeproject.org/files/ENCFF147VQR/@@download/ENCFF147VQR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF778SPV bigBed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF839QAG 2746398 ENCODE Processing Pipeline 734cbd81d6ad42226090756cbc24fd2c https://www.encodeproject.org/files/ENCFF778SPV/@@download/ENCFF778SPV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF181KNW bigBed narrowPeak peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF813TOY 1467969 ENCODE Processing Pipeline 7a391d05340091b8248d494e07a150cd https://www.encodeproject.org/files/ENCFF181KNW/@@download/ENCFF181KNW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF533BMS bigWig signal p-value ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF970VYC 475852285 ENCODE Processing Pipeline 9544e38c0443e8949371a2a79318d93e https://www.encodeproject.org/files/ENCFF533BMS/@@download/ENCFF533BMS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF040RMU bigWig signal p-value ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF965EGM 390763217 ENCODE Processing Pipeline 46ca03d90f350a60f81b059236f8949f https://www.encodeproject.org/files/ENCFF040RMU/@@download/ENCFF040RMU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF828YZL bigWig signal p-value ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF965EGM, ENCFF970VYC 490249950 ENCODE Processing Pipeline 2f8643ba4465dc38f2b4f5111e0124eb https://www.encodeproject.org/files/ENCFF828YZL/@@download/ENCFF828YZL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF893PKB bigWig fold change over control ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF970VYC 473806648 ENCODE Processing Pipeline fa392d5d221ae9a45bc48b6fe69b3cac https://www.encodeproject.org/files/ENCFF893PKB/@@download/ENCFF893PKB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF383FNA bigWig fold change over control ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF965EGM 434472363 ENCODE Processing Pipeline 6f50d14e8cc27cb03944363b82d5a391 https://www.encodeproject.org/files/ENCFF383FNA/@@download/ENCFF383FNA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF485WCD bigWig fold change over control ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF965EGM, ENCFF970VYC 737235179 ENCODE Processing Pipeline 840852dc2dbdf264d74ac93607d9b065 https://www.encodeproject.org/files/ENCFF485WCD/@@download/ENCFF485WCD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF041KRQ bed narrowPeak replicated peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF555PNJ, ENCFF813TOY, ENCFF839QAG 566705 ENCODE Processing Pipeline 2d764b03dfb05b4f7e68d4612f5b019d https://www.encodeproject.org/files/ENCFF041KRQ/@@download/ENCFF041KRQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF910SGA bigBed narrowPeak replicated peaks ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF041KRQ 1298686 ENCODE Processing Pipeline d5805a3c0c581bafaef36aba997a4bbc https://www.encodeproject.org/files/ENCFF910SGA/@@download/ENCFF910SGA.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001MTQ bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MTY 4916346384 Ross Hardison, PennState f343533d2cdc6b64d81d86f8c3acf431 https://www.encodeproject.org/files/ENCFF001MTQ/@@download/ENCFF001MTQ.bam mm9 archived low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF001MTR bigBed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE ENCFF001YGF 154698 Ross Hardison, PennState e9d5ce5cce788b2eaa847df72ce6e56f https://www.encodeproject.org/files/ENCFF001MTR/@@download/ENCFF001MTR.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF001MTS bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF001MTZ 5965247696 Ross Hardison, PennState 2f4e54269db0fc9072301f1a60d9d97c https://www.encodeproject.org/files/ENCFF001MTS/@@download/ENCFF001MTS.bam mm9 archived low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF001MTT bigBed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YGG 161895 Ross Hardison, PennState 776af5171aac77a3370ad48a986ac344 https://www.encodeproject.org/files/ENCFF001MTT/@@download/ENCFF001MTT.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF001MTU bigBed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 ENCFF001YGH 106768 Ross Hardison, PennState 5718e2c9cd3b8505032376e6b6d6d9c7 https://www.encodeproject.org/files/ENCFF001MTU/@@download/ENCFF001MTU.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF001MTV bigWig signal ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 5010294007 Ross Hardison, PennState 43fb04bf2202b5535b86ac04b79cff87 https://www.encodeproject.org/files/ENCFF001MTV/@@download/ENCFF001MTV.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, NTR biosample, biological replicates with identical biosample ENCFF001MTW bigWig signal ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 5169906511 Ross Hardison, PennState ceb5678102a899710c25628b09c95be0 https://www.encodeproject.org/files/ENCFF001MTW/@@download/ENCFF001MTW.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, NTR biosample, biological replicates with identical biosample ENCFF001MTX bigWig signal ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 6154100954 Ross Hardison, PennState e87dd4c4a19c1d83566d101b924f7561 https://www.encodeproject.org/files/ENCFF001MTX/@@download/ENCFF001MTX.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, NTR biosample, biological replicates with identical biosample ENCFF001MTY fastq reads ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 55 single-ended 4215419263 Ross Hardison, PennState b5dee4a8a9ab7d8f26c8239cf03658c9 https://www.encodeproject.org/files/ENCFF001MTY/@@download/ENCFF001MTY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUT/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF001MTZ fastq reads ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 48 single-ended 5159708324 Ross Hardison, PennState be60f748feb5eb302a40c7d9df58e816 https://www.encodeproject.org/files/ENCFF001MTZ/@@download/ENCFF001MTZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF001YGF bed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 58317 Ross Hardison, PennState 135ec190933fa12645d2b60c0804ca56 https://www.encodeproject.org/files/ENCFF001YGF/@@download/ENCFF001YGF.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, NTR biosample, biological replicates with identical biosample ENCFF001YGG bed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 66331 Ross Hardison, PennState acf06d26611ec4dcc9fd67452f85e68e https://www.encodeproject.org/files/ENCFF001YGG/@@download/ENCFF001YGG.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, NTR biosample, biological replicates with identical biosample ENCFF001YGH bed broadPeak peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 38081 Ross Hardison, PennState 1f73be1c0fd3c4b597d195e1dadee6a2 https://www.encodeproject.org/files/ENCFF001YGH/@@download/ENCFF001YGH.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, NTR biosample, biological replicates with identical biosample ENCFF807GJJ bam unfiltered alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MTY, ENCFF018NEO 4310799638 ENCODE Processing Pipeline 2f6d11d854966540d7618484b0107cd2 https://www.encodeproject.org/files/ENCFF807GJJ/@@download/ENCFF807GJJ.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF879WSC bam unfiltered alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MTZ, ENCFF018NEO 5764585844 ENCODE Processing Pipeline de921ff1dc8cd8df2b3631a0d26c5d1c https://www.encodeproject.org/files/ENCFF879WSC/@@download/ENCFF879WSC.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF816XGO bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MTY, ENCFF018NEO 3165515136 ENCODE Processing Pipeline 2911085887f82d6721cb2243a0671d3d https://www.encodeproject.org/files/ENCFF816XGO/@@download/ENCFF816XGO.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF556CHE bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MTZ, ENCFF018NEO 3894800981 ENCODE Processing Pipeline d6258b64429604f68da5d757bebebee2 https://www.encodeproject.org/files/ENCFF556CHE/@@download/ENCFF556CHE.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF992TGS bigWig signal p-value ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 1124965364 ENCODE Processing Pipeline f6f21b700f2673632d5a3d97d34ef8fb https://www.encodeproject.org/files/ENCFF992TGS/@@download/ENCFF992TGS.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF842OQE bigWig signal p-value ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF556CHE, ENCFF769SND, ENCFF887RWQ 1219679203 ENCODE Processing Pipeline fd7f1f35cca41bbf6381507666d6987e https://www.encodeproject.org/files/ENCFF842OQE/@@download/ENCFF842OQE.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF413LJT bigWig signal p-value ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF556CHE, ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 1799088882 ENCODE Processing Pipeline 356f6fec0b325c5540edbdfa039e9693 https://www.encodeproject.org/files/ENCFF413LJT/@@download/ENCFF413LJT.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF733OIM bigWig fold change over control ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 1382248039 ENCODE Processing Pipeline c0a2c3bb98f8ce14f2bd02927e94d146 https://www.encodeproject.org/files/ENCFF733OIM/@@download/ENCFF733OIM.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF149GEQ bigWig fold change over control ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF556CHE, ENCFF769SND, ENCFF887RWQ 1537556541 ENCODE Processing Pipeline e33f99273f55c436b2d446fc9dac3e5c https://www.encodeproject.org/files/ENCFF149GEQ/@@download/ENCFF149GEQ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF460EAQ bigWig fold change over control ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF556CHE, ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 2012668752 ENCODE Processing Pipeline 544bbe6066fe31252681c2acc4ead33a https://www.encodeproject.org/files/ENCFF460EAQ/@@download/ENCFF460EAQ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF790TJE bed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF556CHE, ENCFF769SND, ENCFF887RWQ 6996425 ENCODE Processing Pipeline c0d6eb177d87b698e4add051d0bf646c https://www.encodeproject.org/files/ENCFF790TJE/@@download/ENCFF790TJE.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF082ZXF bed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 7119310 ENCODE Processing Pipeline 7116b3e11b3fc4fe2941bc6116412903 https://www.encodeproject.org/files/ENCFF082ZXF/@@download/ENCFF082ZXF.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF630ESV bed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF556CHE, ENCFF769SND, ENCFF816XGO, ENCFF887RWQ 7270758 ENCODE Processing Pipeline a2105fb2bf0deb865e341cdb14dcf405 https://www.encodeproject.org/files/ENCFF630ESV/@@download/ENCFF630ESV.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF565RAC bigBed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF790TJE 11341298 ENCODE Processing Pipeline 87ada54f418940f80d3faa265022e7af https://www.encodeproject.org/files/ENCFF565RAC/@@download/ENCFF565RAC.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF123JSF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF890NMH 127565 ENCODE Processing Pipeline 757df5644a764b09a952f51a029d5aa6 https://www.encodeproject.org/files/ENCFF123JSF/@@download/ENCFF123JSF.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF111EJN bigBed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF082ZXF 13240177 ENCODE Processing Pipeline 366c4bad13148f20e37ddb4da92ede75 https://www.encodeproject.org/files/ENCFF111EJN/@@download/ENCFF111EJN.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF021FKC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF151IMU 151082 ENCODE Processing Pipeline e33477f1974c711b6356670f44d99bc7 https://www.encodeproject.org/files/ENCFF021FKC/@@download/ENCFF021FKC.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF151IMU bed narrowPeak optimal idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF082ZXF, ENCFF547MET, ENCFF630ESV, ENCFF790TJE 62273 ENCODE Processing Pipeline 8378edf484528fc351de285d63306e8e https://www.encodeproject.org/files/ENCFF151IMU/@@download/ENCFF151IMU.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF883DBM bigBed narrowPeak peaks and background as input for IDR ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF630ESV 13346291 ENCODE Processing Pipeline 0c6e241e005b109bd137c6b3a38997f6 https://www.encodeproject.org/files/ENCFF883DBM/@@download/ENCFF883DBM.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF890NMH bed narrowPeak conservative idr thresholded peaks ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1, 2 ENCFF082ZXF, ENCFF547MET, ENCFF630ESV, ENCFF790TJE 45734 ENCODE Processing Pipeline eb9fa2cfbafcc20cb80a684352e5694d https://www.encodeproject.org/files/ENCFF890NMH/@@download/ENCFF890NMH.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF002AMH fastq reads ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 925828500 Bing Ren, UCSD 9e1621d496e5b93f22abdb181abd1969 SRA:SRR3651307 https://www.encodeproject.org/files/ENCFF002AMH/@@download/ENCFF002AMH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APV/ released low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AML fastq reads ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1334235955 Bing Ren, UCSD 029e9ea5a4f09efcaac8e2d972bae832 SRA:SRR3651308 https://www.encodeproject.org/files/ENCFF002AML/@@download/ENCFF002AML.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APU/ released low read length, mild to moderate bottlenecking, low read depth ENCFF749ROV bam alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMH, ENCFF806TVZ 535292901 ENCODE Processing Pipeline 861f355146112ffc056297cdf82e68ff https://www.encodeproject.org/files/ENCFF749ROV/@@download/ENCFF749ROV.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF581BUI bam alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AML, ENCFF806TVZ 800895931 ENCODE Processing Pipeline b49ba94ef59f57be98b67ab23a00f4af https://www.encodeproject.org/files/ENCFF581BUI/@@download/ENCFF581BUI.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF919NYI bed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF581BUI, ENCFF749ROV 620516 ENCODE Processing Pipeline 77315a7f5ebb4f05630251eca1942bba https://www.encodeproject.org/files/ENCFF919NYI/@@download/ENCFF919NYI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF069YVC bed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF749ROV 536707 ENCODE Processing Pipeline 909e248e208701bbcdc47b0d71a9a434 https://www.encodeproject.org/files/ENCFF069YVC/@@download/ENCFF069YVC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF730UFL bigBed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF069YVC 1834866 ENCODE Processing Pipeline 27f0e37ed985a29b8549e23e52ac015e https://www.encodeproject.org/files/ENCFF730UFL/@@download/ENCFF730UFL.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF696OEI bigBed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF919NYI 2001089 ENCODE Processing Pipeline d0a973ad090160c1036bd16377be0a23 https://www.encodeproject.org/files/ENCFF696OEI/@@download/ENCFF696OEI.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF114YDJ bed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF581BUI 596489 ENCODE Processing Pipeline b6cf6f184cfd393508d08ca67994f880 https://www.encodeproject.org/files/ENCFF114YDJ/@@download/ENCFF114YDJ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF409RDB bigBed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF114YDJ 1938500 ENCODE Processing Pipeline 58f7bfa42dcfa4ad93af7435f2b8bf30 https://www.encodeproject.org/files/ENCFF409RDB/@@download/ENCFF409RDB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF399GMW bigWig signal p-value ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF749ROV 329827129 ENCODE Processing Pipeline 5ba61fb823eb2849a1890d6ee2e7c39a https://www.encodeproject.org/files/ENCFF399GMW/@@download/ENCFF399GMW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF186TGD bigWig signal p-value ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF581BUI 468523245 ENCODE Processing Pipeline b30f61c92027f7200e630171691b333b https://www.encodeproject.org/files/ENCFF186TGD/@@download/ENCFF186TGD.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF416HNK bigWig signal p-value ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF581BUI, ENCFF749ROV 542910055 ENCODE Processing Pipeline 7c92bc2f42578c371bcbcb914cc471d6 https://www.encodeproject.org/files/ENCFF416HNK/@@download/ENCFF416HNK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF944MTE bigWig fold change over control ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF749ROV 242640815 ENCODE Processing Pipeline 21add4fca8a8782e63b46666d99de17b https://www.encodeproject.org/files/ENCFF944MTE/@@download/ENCFF944MTE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF821AFY bigWig fold change over control ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF581BUI 362893021 ENCODE Processing Pipeline b42c191e97a321b5598006a78914883c https://www.encodeproject.org/files/ENCFF821AFY/@@download/ENCFF821AFY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF909JVF bigWig fold change over control ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF581BUI, ENCFF749ROV 553278093 ENCODE Processing Pipeline d3239a3d818c7833e4d06874a1aacc12 https://www.encodeproject.org/files/ENCFF909JVF/@@download/ENCFF909JVF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF533XPK bed narrowPeak replicated peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069YVC, ENCFF114YDJ, ENCFF919NYI 713764 ENCODE Processing Pipeline e8f7c7d0d12d8b1981f29ce2ebf2a0f7 https://www.encodeproject.org/files/ENCFF533XPK/@@download/ENCFF533XPK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF062LXO bigBed narrowPeak replicated peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF533XPK 1702638 ENCODE Processing Pipeline 0ae7f273a72fcedfd9b4cc29d3593b02 https://www.encodeproject.org/files/ENCFF062LXO/@@download/ENCFF062LXO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF762QCD bam unfiltered alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMH, ENCFF018NEO 928781098 ENCODE Processing Pipeline 7fae45209b248a496dd91bba74f5ca79 https://www.encodeproject.org/files/ENCFF762QCD/@@download/ENCFF762QCD.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF687BWU bam unfiltered alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AML, ENCFF018NEO 1300515419 ENCODE Processing Pipeline 0c958e9db69178b75ca8bc8af0055541 https://www.encodeproject.org/files/ENCFF687BWU/@@download/ENCFF687BWU.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF134TLH bam alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMH, ENCFF018NEO 535145654 ENCODE Processing Pipeline eb71035550f7169c47f0678a36685237 https://www.encodeproject.org/files/ENCFF134TLH/@@download/ENCFF134TLH.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF810KFI bam alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AML, ENCFF018NEO 800777559 ENCODE Processing Pipeline c9ca6034c9b712241606497720814596 https://www.encodeproject.org/files/ENCFF810KFI/@@download/ENCFF810KFI.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF072HPC bed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF506NSJ, ENCFF810KFI 600912 ENCODE Processing Pipeline 1e8c527cea75aac87f5d00d52eba451a https://www.encodeproject.org/files/ENCFF072HPC/@@download/ENCFF072HPC.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF998YDR bed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF134TLH, ENCFF506NSJ 540998 ENCODE Processing Pipeline 576045ed6fe5351c1ede468da093d875 https://www.encodeproject.org/files/ENCFF998YDR/@@download/ENCFF998YDR.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF627JZT bigBed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF998YDR 1845381 ENCODE Processing Pipeline a5d6a2efbb9863c456bfaf82efd46db8 https://www.encodeproject.org/files/ENCFF627JZT/@@download/ENCFF627JZT.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF383OVC bigWig signal p-value ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF134TLH, ENCFF506NSJ 296759727 ENCODE Processing Pipeline 4d949de1068b618dbd0b3338acbb2d12 https://www.encodeproject.org/files/ENCFF383OVC/@@download/ENCFF383OVC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF666MAV bigWig signal p-value ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF506NSJ, ENCFF810KFI 456524884 ENCODE Processing Pipeline b0b21bc13a01b27d6bc4e7860f48db43 https://www.encodeproject.org/files/ENCFF666MAV/@@download/ENCFF666MAV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF977SUJ bigWig signal p-value ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF134TLH, ENCFF396CVK, ENCFF506NSJ, ENCFF810KFI 506632706 ENCODE Processing Pipeline 5fc22425527ad21288a413d835530006 https://www.encodeproject.org/files/ENCFF977SUJ/@@download/ENCFF977SUJ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF881VJL bed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF134TLH, ENCFF396CVK, ENCFF506NSJ, ENCFF810KFI 629778 ENCODE Processing Pipeline 01ef50d0150a3a33c78515f3974038ee https://www.encodeproject.org/files/ENCFF881VJL/@@download/ENCFF881VJL.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF119QRI bigBed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF072HPC 1949631 ENCODE Processing Pipeline 12414a3d78d14af2c0966480388e07cc https://www.encodeproject.org/files/ENCFF119QRI/@@download/ENCFF119QRI.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF673RSM bigBed narrowPeak peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF881VJL 2007162 ENCODE Processing Pipeline bcdce9b18f53d0f21dd5b30fa2289c5d https://www.encodeproject.org/files/ENCFF673RSM/@@download/ENCFF673RSM.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF280LIG bigWig fold change over control ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF134TLH, ENCFF506NSJ 245321545 ENCODE Processing Pipeline bb55fe8e82acddb78bb2d18b68f710d3 https://www.encodeproject.org/files/ENCFF280LIG/@@download/ENCFF280LIG.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF317WPR bigWig fold change over control ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF506NSJ, ENCFF810KFI 390368746 ENCODE Processing Pipeline b70b846365d08caf5745469cbe4cf48a https://www.encodeproject.org/files/ENCFF317WPR/@@download/ENCFF317WPR.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF774GGS bigWig fold change over control ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF134TLH, ENCFF396CVK, ENCFF506NSJ, ENCFF810KFI 571543126 ENCODE Processing Pipeline 105799393d8562cb2a834a433c6d3f3c https://www.encodeproject.org/files/ENCFF774GGS/@@download/ENCFF774GGS.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF592CXI bigBed narrowPeak replicated peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF757LMZ 1694196 ENCODE Processing Pipeline 8f842012c101c9f20656a9d6b120d8f6 https://www.encodeproject.org/files/ENCFF592CXI/@@download/ENCFF592CXI.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF757LMZ bed narrowPeak replicated peaks ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF072HPC, ENCFF881VJL, ENCFF998YDR 716446 ENCODE Processing Pipeline 2ffa0752df4d17070146d82e027c6b34 https://www.encodeproject.org/files/ENCFF757LMZ/@@download/ENCFF757LMZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF002AOG fastq reads ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1489311416 Bing Ren, UCSD 217ed72802ddc06b7d1fe63dd85cb765 SRA:SRR3651753 https://www.encodeproject.org/files/ENCFF002AOG/@@download/ENCFF002AOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth severe bottlenecking ENCFF002AOK fastq reads ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1687661843 Bing Ren, UCSD f38d48f29bb55b5600c9686a74636746 SRA:SRR3651752 https://www.encodeproject.org/files/ENCFF002AOK/@@download/ENCFF002AOK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQF/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth severe bottlenecking ENCFF968STD bam alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOK, ENCFF806TVZ 744740699 ENCODE Processing Pipeline a18a4e5672fe9b760f60c669b696ac6f https://www.encodeproject.org/files/ENCFF968STD/@@download/ENCFF968STD.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF601WGQ bam alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOG, ENCFF806TVZ 820688960 ENCODE Processing Pipeline abee4b940948c880cf4e01e561f61fa1 https://www.encodeproject.org/files/ENCFF601WGQ/@@download/ENCFF601WGQ.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF344QFF bed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF868CEP, ENCFF968STD 1349708 ENCODE Processing Pipeline db9b1239e0771d4d687cf7055571a561 https://www.encodeproject.org/files/ENCFF344QFF/@@download/ENCFF344QFF.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF887ERH bed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462HQE, ENCFF601WGQ, ENCFF868CEP, ENCFF968STD 1249919 ENCODE Processing Pipeline d0dad2176ea72d70ff1348f7c1397543 https://www.encodeproject.org/files/ENCFF887ERH/@@download/ENCFF887ERH.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF062HKP bed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF601WGQ 902588 ENCODE Processing Pipeline 8e33439f79750ad1959728d637186bad https://www.encodeproject.org/files/ENCFF062HKP/@@download/ENCFF062HKP.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF635UWQ bigBed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF344QFF 3238741 ENCODE Processing Pipeline 4ca71f7b7abc9acee031e13e0a07f165 https://www.encodeproject.org/files/ENCFF635UWQ/@@download/ENCFF635UWQ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF498DIH bigBed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF062HKP 2305117 ENCODE Processing Pipeline 3e6019f86c624b2c4e72f50dca485219 https://www.encodeproject.org/files/ENCFF498DIH/@@download/ENCFF498DIH.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF467LJO bigBed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF887ERH 2971032 ENCODE Processing Pipeline f2ef0ec30a73d433b8b4bbcf4053bfc2 https://www.encodeproject.org/files/ENCFF467LJO/@@download/ENCFF467LJO.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF069FSO bigWig signal p-value ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF601WGQ 389446967 ENCODE Processing Pipeline 153197bd4d97ead0bd779d0e09b69b8f https://www.encodeproject.org/files/ENCFF069FSO/@@download/ENCFF069FSO.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF223KRZ bigWig signal p-value ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF868CEP, ENCFF968STD 348019040 ENCODE Processing Pipeline d2165ff7be09f7d7383701298bae749b https://www.encodeproject.org/files/ENCFF223KRZ/@@download/ENCFF223KRZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF015PFX bigWig signal p-value ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462HQE, ENCFF601WGQ, ENCFF868CEP, ENCFF968STD 526203312 ENCODE Processing Pipeline 6eb73f6d23fa5431e03760e561c0a189 https://www.encodeproject.org/files/ENCFF015PFX/@@download/ENCFF015PFX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF081CXC bigWig fold change over control ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF601WGQ 372864978 ENCODE Processing Pipeline 74d55b177c230ec01caaa755b5a20f16 https://www.encodeproject.org/files/ENCFF081CXC/@@download/ENCFF081CXC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF193TWH bigWig fold change over control ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF868CEP, ENCFF968STD 336922294 ENCODE Processing Pipeline 88f9c77ebec437985d6aa2663ee54855 https://www.encodeproject.org/files/ENCFF193TWH/@@download/ENCFF193TWH.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF713FBS bed narrowPeak replicated peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF062HKP, ENCFF344QFF, ENCFF887ERH 699730 ENCODE Processing Pipeline 699dccc119c79e13aceff9bd757bb4c7 https://www.encodeproject.org/files/ENCFF713FBS/@@download/ENCFF713FBS.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF721CTC bigWig fold change over control ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF462HQE, ENCFF601WGQ, ENCFF868CEP, ENCFF968STD 683445661 ENCODE Processing Pipeline 706accb0a31229cc0bbefb0a7cf95047 https://www.encodeproject.org/files/ENCFF721CTC/@@download/ENCFF721CTC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF942QDB bigBed narrowPeak replicated peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF713FBS 1820817 ENCODE Processing Pipeline 59112cd4c9458835a17c58b2f02f98c9 https://www.encodeproject.org/files/ENCFF942QDB/@@download/ENCFF942QDB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF155BXE bam unfiltered alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOG, ENCFF018NEO 1588393054 ENCODE Processing Pipeline 2df21309cbd376beca1ddc31413ec773 https://www.encodeproject.org/files/ENCFF155BXE/@@download/ENCFF155BXE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF149FQX bam unfiltered alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOK, ENCFF018NEO 1735540587 ENCODE Processing Pipeline a8eb6c62f939dfa0d8b562edab6e8bcd https://www.encodeproject.org/files/ENCFF149FQX/@@download/ENCFF149FQX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF225JPR bam alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOK, ENCFF018NEO 744600453 ENCODE Processing Pipeline 4aed78150ac977724f92ee61dd610864 https://www.encodeproject.org/files/ENCFF225JPR/@@download/ENCFF225JPR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF589OMC bam alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOG, ENCFF018NEO 820507515 ENCODE Processing Pipeline 95784571c1cb1308e37588ba5cc26928 https://www.encodeproject.org/files/ENCFF589OMC/@@download/ENCFF589OMC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF725FXV bed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF589OMC, ENCFF598OHC 822562 ENCODE Processing Pipeline 729c015b550ff6c83f5714db5df15c4f https://www.encodeproject.org/files/ENCFF725FXV/@@download/ENCFF725FXV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF306XQV bed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF225JPR, ENCFF383CGK 1308597 ENCODE Processing Pipeline ce1037f37be9b081377dcd45acd3ea00 https://www.encodeproject.org/files/ENCFF306XQV/@@download/ENCFF306XQV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF828ZKV bed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF225JPR, ENCFF383CGK, ENCFF589OMC, ENCFF598OHC 1221352 ENCODE Processing Pipeline aff331266640b1fc3112d78fb6b65825 https://www.encodeproject.org/files/ENCFF828ZKV/@@download/ENCFF828ZKV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF517RDC bigBed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF725FXV 2137896 ENCODE Processing Pipeline be417c586cda6619daa637258960c36e https://www.encodeproject.org/files/ENCFF517RDC/@@download/ENCFF517RDC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF380HXT bigBed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF306XQV 3160223 ENCODE Processing Pipeline 9a6f9bf64e4e75b69f2f38a4ececba60 https://www.encodeproject.org/files/ENCFF380HXT/@@download/ENCFF380HXT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF780UPA bigBed narrowPeak peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF828ZKV 2942648 ENCODE Processing Pipeline 1a5aee1874be785506d406b0820956c1 https://www.encodeproject.org/files/ENCFF780UPA/@@download/ENCFF780UPA.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF275FLS bigWig signal p-value ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF589OMC, ENCFF598OHC 393423845 ENCODE Processing Pipeline 44618bd21c36be4c1f5b80d3783a6b3c https://www.encodeproject.org/files/ENCFF275FLS/@@download/ENCFF275FLS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF756ZDT bigWig signal p-value ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF225JPR, ENCFF383CGK 299215403 ENCODE Processing Pipeline cb31b2c035eca9e992358ae0a611fa59 https://www.encodeproject.org/files/ENCFF756ZDT/@@download/ENCFF756ZDT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF422JWB bigWig signal p-value ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF225JPR, ENCFF383CGK, ENCFF589OMC, ENCFF598OHC 759335997 ENCODE Processing Pipeline 5e72194cad59d0c51a1f46f7ac2f9045 https://www.encodeproject.org/files/ENCFF422JWB/@@download/ENCFF422JWB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF427CFS bigWig fold change over control ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF589OMC, ENCFF598OHC 375173976 ENCODE Processing Pipeline 8a35447a8303c14bc2c5c57a391fd7f2 https://www.encodeproject.org/files/ENCFF427CFS/@@download/ENCFF427CFS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF944LLO bigWig fold change over control ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF225JPR, ENCFF383CGK 330547821 ENCODE Processing Pipeline bbc1b79c29ae1e69fcdc31a842bc26b0 https://www.encodeproject.org/files/ENCFF944LLO/@@download/ENCFF944LLO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF443SGX bigWig fold change over control ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF225JPR, ENCFF383CGK, ENCFF589OMC, ENCFF598OHC 752199962 ENCODE Processing Pipeline d68f9ea9f16ebcac2e5b796728bf9bb1 https://www.encodeproject.org/files/ENCFF443SGX/@@download/ENCFF443SGX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF141DMD bed narrowPeak replicated peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF306XQV, ENCFF725FXV, ENCFF828ZKV 709034 ENCODE Processing Pipeline 83af02758b2b8b6f6778b07e90901fc2 https://www.encodeproject.org/files/ENCFF141DMD/@@download/ENCFF141DMD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF473TCY bigBed narrowPeak replicated peaks ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF141DMD 1792435 ENCODE Processing Pipeline 6f26c140cec0e5f71333a31fd6b33d1f https://www.encodeproject.org/files/ENCFF473TCY/@@download/ENCFF473TCY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF001NLW bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NLZ 557399523 Michael Snyder, Stanford da5dc9245216e93f5c676fb1807cd9c3 https://www.encodeproject.org/files/ENCFF001NLW/@@download/ENCFF001NLW.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NLY bigBed narrowPeak peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIR 742420 Michael Snyder, Stanford 5240025abdb40f4ec1168b83ecb37da5 https://www.encodeproject.org/files/ENCFF001NLY/@@download/ENCFF001NLY.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NLZ fastq reads ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 1019828534 Michael Snyder, Stanford c76e33c218bb9c3ce749b806d67f83b4 https://www.encodeproject.org/files/ENCFF001NLZ/@@download/ENCFF001NLZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMB fastq reads ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1044399104 Michael Snyder, Stanford 35107279e8ebca380b3282154b625fe6 https://www.encodeproject.org/files/ENCFF001NMB/@@download/ENCFF001NMB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMD bigWig signal ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NLW, ENCFF001NME 238498421 Michael Snyder, Stanford a83e5a9596ade8f522415ccf79408f32 https://www.encodeproject.org/files/ENCFF001NMD/@@download/ENCFF001NMD.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NME bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NMB 533150746 Michael Snyder, Stanford f5a262f1165683861c3948bc44cf8dcc https://www.encodeproject.org/files/ENCFF001NME/@@download/ENCFF001NME.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001YIR bed narrowPeak peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NLW, ENCFF001NME 277922 Michael Snyder, Stanford dcbb9824da0903cd486ab681092a1ccd https://www.encodeproject.org/files/ENCFF001YIR/@@download/ENCFF001YIR.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF270VKT bam unfiltered alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMB, ENCFF018NEO 1128343758 ENCODE Processing Pipeline d647ce5eec7afbda8e446632a2421e3c https://www.encodeproject.org/files/ENCFF270VKT/@@download/ENCFF270VKT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF025UUK bam unfiltered alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NLZ, ENCFF018NEO 1121483736 ENCODE Processing Pipeline 8376c08b235c5a84ea4a5bcfa274f6ec https://www.encodeproject.org/files/ENCFF025UUK/@@download/ENCFF025UUK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF117RLB bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMB, ENCFF018NEO 715236493 ENCODE Processing Pipeline 8b3b75bdedf391e6e76868046d6bdf11 https://www.encodeproject.org/files/ENCFF117RLB/@@download/ENCFF117RLB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF069HIE bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NLZ, ENCFF018NEO 759339058 ENCODE Processing Pipeline 857be1ae1b7470936b5fdcb741671cd4 https://www.encodeproject.org/files/ENCFF069HIE/@@download/ENCFF069HIE.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF872DBE bigWig signal p-value ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF069HIE, ENCFF339ZWC 244679696 ENCODE Processing Pipeline a473d80e404311ab0e6ce5b8938636cb https://www.encodeproject.org/files/ENCFF872DBE/@@download/ENCFF872DBE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF356EBI bigWig fold change over control ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF069HIE, ENCFF339ZWC 313889497 ENCODE Processing Pipeline 626807ad3f97790bc562d7423d7a12a0 https://www.encodeproject.org/files/ENCFF356EBI/@@download/ENCFF356EBI.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF852MBQ bigWig signal p-value ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF117RLB, ENCFF339ZWC 236678049 ENCODE Processing Pipeline ba4dc8f3876e1786f9fa1063a785b1e3 https://www.encodeproject.org/files/ENCFF852MBQ/@@download/ENCFF852MBQ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF160ECL bigWig signal p-value ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF069HIE, ENCFF117RLB, ENCFF339ZWC 220983221 ENCODE Processing Pipeline 17669f70a14f4984ecea16e011edd99b https://www.encodeproject.org/files/ENCFF160ECL/@@download/ENCFF160ECL.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF340HBG bigWig fold change over control ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF117RLB, ENCFF339ZWC 291431721 ENCODE Processing Pipeline 14fe58d0ea9e8fdd7e5b69b07e6fa823 https://www.encodeproject.org/files/ENCFF340HBG/@@download/ENCFF340HBG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF592TWQ bed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF069HIE, ENCFF339ZWC 577991 ENCODE Processing Pipeline 6f321a690093c4a1ccbc11a73a4cc4a2 https://www.encodeproject.org/files/ENCFF592TWQ/@@download/ENCFF592TWQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF429LKF bigWig fold change over control ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF069HIE, ENCFF117RLB, ENCFF339ZWC 528083329 ENCODE Processing Pipeline 5baa4ba2d504a43fec53537824ab4bb8 https://www.encodeproject.org/files/ENCFF429LKF/@@download/ENCFF429LKF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF538CFM bed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF117RLB, ENCFF339ZWC 793225 ENCODE Processing Pipeline e7f419d7aed17564d96b8543c86424a3 https://www.encodeproject.org/files/ENCFF538CFM/@@download/ENCFF538CFM.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF513ULO bigBed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF592TWQ 1222656 ENCODE Processing Pipeline aeb0af51a268a925699f8afd60adb160 https://www.encodeproject.org/files/ENCFF513ULO/@@download/ENCFF513ULO.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF160QIJ bed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF069HIE, ENCFF117RLB, ENCFF339ZWC 5102186 ENCODE Processing Pipeline 9934e266e798c9a3d034ee3407c4f705 https://www.encodeproject.org/files/ENCFF160QIJ/@@download/ENCFF160QIJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF041FQF bigBed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF538CFM 1649209 ENCODE Processing Pipeline b1e6549e3885c9038399d82d2706ca8f https://www.encodeproject.org/files/ENCFF041FQF/@@download/ENCFF041FQF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF622TGK bed narrowPeak conservative idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF160QIJ, ENCFF538CFM, ENCFF547MET, ENCFF592TWQ 163181 ENCODE Processing Pipeline a431968bb8aceda71a534b7e82010706 https://www.encodeproject.org/files/ENCFF622TGK/@@download/ENCFF622TGK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF601ECR bigBed narrowPeak peaks and background as input for IDR ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF160QIJ 10846892 ENCODE Processing Pipeline 4f5d4099aefa21fecff9f3a8a7cec42a https://www.encodeproject.org/files/ENCFF601ECR/@@download/ENCFF601ECR.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF813GUH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF622TGK 287097 ENCODE Processing Pipeline 9b28bdefda14f3dbb7f740712e30710b https://www.encodeproject.org/files/ENCFF813GUH/@@download/ENCFF813GUH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF049FSZ bed narrowPeak optimal idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF160QIJ, ENCFF538CFM, ENCFF547MET, ENCFF592TWQ 172863 ENCODE Processing Pipeline 0a1a52670f4c14edd6a2538541861e87 https://www.encodeproject.org/files/ENCFF049FSZ/@@download/ENCFF049FSZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF518ZGA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF049FSZ 299298 ENCODE Processing Pipeline 04ac2174746995f465a78ca09bd04ce3 https://www.encodeproject.org/files/ENCFF518ZGA/@@download/ENCFF518ZGA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001LZQ bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MAC 2707141093 Ross Hardison, PennState 07400aa79c00ed8d2b1e35dded891456 https://www.encodeproject.org/files/ENCFF001LZQ/@@download/ENCFF001LZQ.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001LZS bigBed broadPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YCU 3037632 Ross Hardison, PennState 3ec0c312f9e2e77b7c5690777c8199a9 https://www.encodeproject.org/files/ENCFF001LZS/@@download/ENCFF001LZS.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001LZT bigBed broadPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCV 2676327 Ross Hardison, PennState a1fb21c095cf2efc869bf3780294081b https://www.encodeproject.org/files/ENCFF001LZT/@@download/ENCFF001LZT.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001LZU bigBed broadPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCW 2690931 Ross Hardison, PennState 3c340fc91ce36e701e42fe7b63a21979 https://www.encodeproject.org/files/ENCFF001LZU/@@download/ENCFF001LZU.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001LZV bigWig signal ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 4122626030 Ross Hardison, PennState f45459ba7e3ad0c6ae9d2c9074a7907d https://www.encodeproject.org/files/ENCFF001LZV/@@download/ENCFF001LZV.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001LZW bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MAJ 4509561377 Ross Hardison, PennState d9924afcacd51b8eaf0229686537dd21 https://www.encodeproject.org/files/ENCFF001LZW/@@download/ENCFF001LZW.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001LZX bigWig signal ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5182171025 Ross Hardison, PennState af5a3510816fb026d43f6f57e7e0744b https://www.encodeproject.org/files/ENCFF001LZX/@@download/ENCFF001LZX.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001LZY bigWig signal ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 5673313678 Ross Hardison, PennState 1401916586c5e08806d99a7fa4f6be89 https://www.encodeproject.org/files/ENCFF001LZY/@@download/ENCFF001LZY.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MAC fastq reads ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 2428257316 Ross Hardison, PennState a0019fa558e4a1f8b10346a0571f922e https://www.encodeproject.org/files/ENCFF001MAC/@@download/ENCFF001MAC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MOR/ released inconsistent platforms, inconsistent control read length biological replicates with identical biosample ENCFF001MAJ fastq reads ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4086553196 Ross Hardison, PennState 7db1737f23992c8d4ffe2584c20f8e61 https://www.encodeproject.org/files/ENCFF001MAJ/@@download/ENCFF001MAJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MPG/ released inconsistent platforms biological replicates with identical biosample ENCFF001YCU bed broadPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1638256 Ross Hardison, PennState 79795f855925d68ee71201a8263dbbf9 https://www.encodeproject.org/files/ENCFF001YCU/@@download/ENCFF001YCU.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YCV bed broadPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1334542 Ross Hardison, PennState 31758335c847bec3a7ce0b6fd2200011 https://www.encodeproject.org/files/ENCFF001YCV/@@download/ENCFF001YCV.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YCW bed broadPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1385601 Ross Hardison, PennState 2703bdb3c27b84944d7b1ed573811181 https://www.encodeproject.org/files/ENCFF001YCW/@@download/ENCFF001YCW.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF621BDP bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MAJ, ENCFF806TVZ 2679648176 ENCODE Processing Pipeline a92a3eb35eb0f0093080f09bb5db01cf https://www.encodeproject.org/files/ENCFF621BDP/@@download/ENCFF621BDP.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF449OLH bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MAC, ENCFF806TVZ 1581011522 ENCODE Processing Pipeline 640cdfc5e0448d5bb24c6fa49725b219 https://www.encodeproject.org/files/ENCFF449OLH/@@download/ENCFF449OLH.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF333TFJ bam unfiltered alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAC, ENCFF018NEO 2174402564 ENCODE Processing Pipeline 5cfd030656aa896db16c46896eaae7c0 https://www.encodeproject.org/files/ENCFF333TFJ/@@download/ENCFF333TFJ.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF665DGF bam unfiltered alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAJ, ENCFF018NEO 3641490502 ENCODE Processing Pipeline ec5db81151bd5f3a2c0d141ac2a12821 https://www.encodeproject.org/files/ENCFF665DGF/@@download/ENCFF665DGF.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF216XEK bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAJ, ENCFF018NEO 2022197775 ENCODE Processing Pipeline da109e81332c26c13d053ffbb093ff83 https://www.encodeproject.org/files/ENCFF216XEK/@@download/ENCFF216XEK.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF244QZP bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAC, ENCFF018NEO 1152393697 ENCODE Processing Pipeline 92419f928594c2e5e0da04ac1c6afa03 https://www.encodeproject.org/files/ENCFF244QZP/@@download/ENCFF244QZP.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF899XVR bed narrowPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF244QZP, ENCFF984QUA 5639677 ENCODE Processing Pipeline 877f94659571fa0253a5f9ac103f1a77 https://www.encodeproject.org/files/ENCFF899XVR/@@download/ENCFF899XVR.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF096GQD bed narrowPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF216XEK, ENCFF984QUA 7990792 ENCODE Processing Pipeline 6b4d304ea36ecb9010c859727e80bf5e https://www.encodeproject.org/files/ENCFF096GQD/@@download/ENCFF096GQD.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF231ZOD bed narrowPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF216XEK, ENCFF244QZP, ENCFF984QUA 8430040 ENCODE Processing Pipeline ef0167071ec4c40a414b50b69163a7c5 https://www.encodeproject.org/files/ENCFF231ZOD/@@download/ENCFF231ZOD.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF183XNM bigBed narrowPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF096GQD 18653455 ENCODE Processing Pipeline 4c94df843d88210068cf35c5b45446e0 https://www.encodeproject.org/files/ENCFF183XNM/@@download/ENCFF183XNM.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF190XGE bigBed narrowPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF899XVR 13462125 ENCODE Processing Pipeline a92ece0f78351cdcbd7623205353daaa https://www.encodeproject.org/files/ENCFF190XGE/@@download/ENCFF190XGE.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF643HPG bigBed narrowPeak peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF231ZOD 19667050 ENCODE Processing Pipeline 1d1bb8e76f0ee7518229319a05e84612 https://www.encodeproject.org/files/ENCFF643HPG/@@download/ENCFF643HPG.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF190ZBZ bigWig signal p-value ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF244QZP, ENCFF984QUA 1033895031 ENCODE Processing Pipeline d98bf8896b781b302335da1fd131e5b6 https://www.encodeproject.org/files/ENCFF190ZBZ/@@download/ENCFF190ZBZ.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF639DNV bigWig signal p-value ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF216XEK, ENCFF984QUA 1201932431 ENCODE Processing Pipeline 14cd68db2cc5de006e264144194e73b6 https://www.encodeproject.org/files/ENCFF639DNV/@@download/ENCFF639DNV.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF283PIT bigWig signal p-value ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF216XEK, ENCFF244QZP, ENCFF984QUA 1228608042 ENCODE Processing Pipeline bab96b88aa47c007e1d0cf309beb4db1 https://www.encodeproject.org/files/ENCFF283PIT/@@download/ENCFF283PIT.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF699EDM bigWig fold change over control ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF244QZP, ENCFF984QUA 818105265 ENCODE Processing Pipeline 1ad0b4c7155f6bc0e70f4fe3edb51e9f https://www.encodeproject.org/files/ENCFF699EDM/@@download/ENCFF699EDM.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF665MVY bigWig fold change over control ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF216XEK, ENCFF984QUA 1035023442 ENCODE Processing Pipeline edf76717848ac87340e0e5eb87450e08 https://www.encodeproject.org/files/ENCFF665MVY/@@download/ENCFF665MVY.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF140MAG bigWig fold change over control ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF216XEK, ENCFF244QZP, ENCFF984QUA 1393065869 ENCODE Processing Pipeline 0a3b80db50ba46aec58b1bb790338cfe https://www.encodeproject.org/files/ENCFF140MAG/@@download/ENCFF140MAG.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF004ZNH bed narrowPeak replicated peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF096GQD, ENCFF231ZOD, ENCFF899XVR 7625803 ENCODE Processing Pipeline d521759ad711913bd7f760029d67d0b9 https://www.encodeproject.org/files/ENCFF004ZNH/@@download/ENCFF004ZNH.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF352UJK bigBed narrowPeak replicated peaks ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF004ZNH 13650676 ENCODE Processing Pipeline ec62d2ad7b75bf45ab80b54820ac5980 https://www.encodeproject.org/files/ENCFF352UJK/@@download/ENCFF352UJK.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF001JWX bam alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001JXN 1691358829 Bing Ren, UCSD 3c7da0343197e1d017b37cede532ceb8 https://www.encodeproject.org/files/ENCFF001JWX/@@download/ENCFF001JWX.bam mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JWY bigBed broadPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XVT 780669 Bing Ren, UCSD 79dfc4100a605f86bb8b89c4ae992792 https://www.encodeproject.org/files/ENCFF001JWY/@@download/ENCFF001JWY.bigBed mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JWZ bam alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001JXF 856959415 Bing Ren, UCSD da7201ae248fe2d1fc69242aae67c693 https://www.encodeproject.org/files/ENCFF001JWZ/@@download/ENCFF001JWZ.bam mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JXA bigWig signal ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 64633630 Bing Ren, UCSD f40a3f0bb283390a3bbbdae715d2a04e https://www.encodeproject.org/files/ENCFF001JXA/@@download/ENCFF001JXA.bigWig mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths missing derived_from, NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JXF fastq reads ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 855212319 Bing Ren, UCSD 18633491d7baf65fa29116a02a4cc6ec https://www.encodeproject.org/files/ENCFF001JXF/@@download/ENCFF001JXF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JXL/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JXN fastq reads ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1877580120 Bing Ren, UCSD 1e13cc4d3569e197f6b5f54bf5b446c9 https://www.encodeproject.org/files/ENCFF001JXN/@@download/ENCFF001JXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF717EAN/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XVT bed broadPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 506188 Bing Ren, UCSD 5cce1ed7d5dcff55f04b0286f644be7b https://www.encodeproject.org/files/ENCFF001XVT/@@download/ENCFF001XVT.bed.gz mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths missing derived_from, NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF332PDP bam unfiltered alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXF, ENCFF018NEO 945743325 ENCODE Processing Pipeline 71ddb80b5a1754142c2fe2b5010bead2 https://www.encodeproject.org/files/ENCFF332PDP/@@download/ENCFF332PDP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF003TGX bam alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXF, ENCFF018NEO 502528657 ENCODE Processing Pipeline 1d920e0daf0f476da9451f0d96e010f2 https://www.encodeproject.org/files/ENCFF003TGX/@@download/ENCFF003TGX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF605XDI bed narrowPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF003TGX, ENCFF498QAY, ENCFF595QRX 2533223 ENCODE Processing Pipeline 79c44a646332bbb590bbee1055811f5c https://www.encodeproject.org/files/ENCFF605XDI/@@download/ENCFF605XDI.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF719ESX bigBed narrowPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF605XDI 4840116 ENCODE Processing Pipeline 599ae2131ef0fa9f3568cb9f8f4a9314 https://www.encodeproject.org/files/ENCFF719ESX/@@download/ENCFF719ESX.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF383KGJ bigWig signal p-value ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF003TGX, ENCFF498QAY, ENCFF595QRX 268053617 ENCODE Processing Pipeline 851d8bbb2ec34df84648bb7790c705c2 https://www.encodeproject.org/files/ENCFF383KGJ/@@download/ENCFF383KGJ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF361RVE bigWig fold change over control ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF003TGX, ENCFF498QAY, ENCFF595QRX 238060494 ENCODE Processing Pipeline 68ba1bfbf7d430ce6791eac741a47ae5 https://www.encodeproject.org/files/ENCFF361RVE/@@download/ENCFF361RVE.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF693LMF bam alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JXN, ENCFF018NEO 252763544 ENCODE Processing Pipeline 926d35a7defe071a70c0eee207c8dda4 https://www.encodeproject.org/files/ENCFF693LMF/@@download/ENCFF693LMF.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF031KEN bam unfiltered alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JXN, ENCFF018NEO 1526207502 ENCODE Processing Pipeline 6706e0dfe91c7ba480309ba7d774da81 https://www.encodeproject.org/files/ENCFF031KEN/@@download/ENCFF031KEN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF931TGZ bed narrowPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF595QRX, ENCFF693LMF 2696477 ENCODE Processing Pipeline 19f3c1677a64b1877bc4270d7b71961a https://www.encodeproject.org/files/ENCFF931TGZ/@@download/ENCFF931TGZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF416FIH bed narrowPeak replicated peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF357BYN, ENCFF605XDI, ENCFF931TGZ 1544556 ENCODE Processing Pipeline c171c6ebf41315bf8dcb7d5de9624da5 https://www.encodeproject.org/files/ENCFF416FIH/@@download/ENCFF416FIH.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF357BYN bed narrowPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF003TGX, ENCFF498QAY, ENCFF595QRX, ENCFF693LMF 2172076 ENCODE Processing Pipeline 0e9285d54c00326b220b99953865ee2f https://www.encodeproject.org/files/ENCFF357BYN/@@download/ENCFF357BYN.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF930WEI bigBed narrowPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF357BYN 4264865 ENCODE Processing Pipeline acfa04e0b2e68168ab06c72e2266fd9a https://www.encodeproject.org/files/ENCFF930WEI/@@download/ENCFF930WEI.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF061USO bigWig signal p-value ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF595QRX, ENCFF693LMF 196678681 ENCODE Processing Pipeline 8c8579d0ea9f5c1387bc8d171c5e0bb9 https://www.encodeproject.org/files/ENCFF061USO/@@download/ENCFF061USO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF664SVP bigWig signal p-value ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF003TGX, ENCFF498QAY, ENCFF595QRX, ENCFF693LMF 327024902 ENCODE Processing Pipeline 04fa8aed91db7d9997aff8ee7bb4d12a https://www.encodeproject.org/files/ENCFF664SVP/@@download/ENCFF664SVP.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF524TFH bigWig fold change over control ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF595QRX, ENCFF693LMF 104762139 ENCODE Processing Pipeline 8bfa2237501fed14fa7ff5d26f1d1f87 https://www.encodeproject.org/files/ENCFF524TFH/@@download/ENCFF524TFH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF198YXO bigWig fold change over control ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF003TGX, ENCFF498QAY, ENCFF595QRX, ENCFF693LMF 326578806 ENCODE Processing Pipeline 340ba6ee11a87d403ef1c777c960f359 https://www.encodeproject.org/files/ENCFF198YXO/@@download/ENCFF198YXO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF935VSK bigBed narrowPeak peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF931TGZ 4963132 ENCODE Processing Pipeline bba4f9d44154ad5b84eea3da6830e07a https://www.encodeproject.org/files/ENCFF935VSK/@@download/ENCFF935VSK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF741SNX bigBed narrowPeak replicated peaks ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF416FIH 2663670 ENCODE Processing Pipeline fe1cd9c540209e28092133aeb560b143 https://www.encodeproject.org/files/ENCFF741SNX/@@download/ENCFF741SNX.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001MSA bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MSD 587508450 Ross Hardison, PennState 94d5cb3600298b460a27061ef222c300 https://www.encodeproject.org/files/ENCFF001MSA/@@download/ENCFF001MSA.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSB bigBed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFV 371747 Ross Hardison, PennState be007a2298a65be9b4d5640d5d09606f https://www.encodeproject.org/files/ENCFF001MSB/@@download/ENCFF001MSB.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSC bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSI 694335076 Ross Hardison, PennState 09b582042b7e999c0813dc43b2059301 https://www.encodeproject.org/files/ENCFF001MSC/@@download/ENCFF001MSC.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSD fastq reads ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 448992400 Ross Hardison, PennState 5e66b53545c7066dda46d73a62b52f24 https://www.encodeproject.org/files/ENCFF001MSD/@@download/ENCFF001MSD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSE bigBed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFW 305280 Ross Hardison, PennState a1c2b2b7d0a9b8353f704fc88812965f https://www.encodeproject.org/files/ENCFF001MSE/@@download/ENCFF001MSE.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSF bigBed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFX 123188 Ross Hardison, PennState 753dd16bb3d1598d7fcae9240388c8b5 https://www.encodeproject.org/files/ENCFF001MSF/@@download/ENCFF001MSF.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSG bigWig signal ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 920595771 Ross Hardison, PennState 6c20c6a672f2199cb0c6261fcf4758da https://www.encodeproject.org/files/ENCFF001MSG/@@download/ENCFF001MSG.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSH bigWig signal ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1312348386 Ross Hardison, PennState 0d2f614c8308a8afb192c85a6a3c5d47 https://www.encodeproject.org/files/ENCFF001MSH/@@download/ENCFF001MSH.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSI fastq reads ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 595263632 Ross Hardison, PennState bbc6f0394807ff7cd0f014e61f943a9f https://www.encodeproject.org/files/ENCFF001MSI/@@download/ENCFF001MSI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released low read length, inconsistent platforms, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001MSJ bigWig signal ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2002056726 Ross Hardison, PennState 5e83ad635cd1afbbd8727aec488e7a6c https://www.encodeproject.org/files/ENCFF001MSJ/@@download/ENCFF001MSJ.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001YFV bed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 203655 Ross Hardison, PennState 1cfadc123ec2dd4a1fbbee6931e68162 https://www.encodeproject.org/files/ENCFF001YFV/@@download/ENCFF001YFV.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001YFW bed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 139614 Ross Hardison, PennState b3dfdc8df544dcd0588a63fe2b93e985 https://www.encodeproject.org/files/ENCFF001YFW/@@download/ENCFF001YFW.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001YFX bed broadPeak peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 51154 Ross Hardison, PennState 18c464a0a94c1a1f85df08aa1554901b https://www.encodeproject.org/files/ENCFF001YFX/@@download/ENCFF001YFX.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF498PQX bam unfiltered alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSD, ENCFF018NEO 620143839 ENCODE Processing Pipeline 00db65c3d5f439b56b515f532a58ec12 https://www.encodeproject.org/files/ENCFF498PQX/@@download/ENCFF498PQX.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF994MOB bam unfiltered alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSI, ENCFF018NEO 731605909 ENCODE Processing Pipeline 3908695768484ef7c2571d0cc29b0f3c https://www.encodeproject.org/files/ENCFF994MOB/@@download/ENCFF994MOB.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF241CAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSI, ENCFF018NEO 488592776 ENCODE Processing Pipeline 57d8cf856774ce53024ab4c7cb8f9d85 https://www.encodeproject.org/files/ENCFF241CAL/@@download/ENCFF241CAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF877FAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSD, ENCFF018NEO 448035213 ENCODE Processing Pipeline fa4de8a1b7ea0c211b98c2587dc53a7c https://www.encodeproject.org/files/ENCFF877FAL/@@download/ENCFF877FAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF893QLS bigWig signal p-value ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 785922079 ENCODE Processing Pipeline a2d52e45b91fce90c223f5d1e9b7350d https://www.encodeproject.org/files/ENCFF893QLS/@@download/ENCFF893QLS.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF741KMP bigWig signal p-value ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI 908809339 ENCODE Processing Pipeline 956b1469c525d5fd2e49916f44c3cd9b https://www.encodeproject.org/files/ENCFF741KMP/@@download/ENCFF741KMP.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF251VYZ bigWig fold change over control ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI 456676785 ENCODE Processing Pipeline eaa68766da6769a89eb160cc485fe7de https://www.encodeproject.org/files/ENCFF251VYZ/@@download/ENCFF251VYZ.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF800RBP bed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 5650745 ENCODE Processing Pipeline f13976b40a48278a519e726cc8c66e36 https://www.encodeproject.org/files/ENCFF800RBP/@@download/ENCFF800RBP.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF269ZXS bed narrowPeak conservative idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF265CLS, ENCFF547MET, ENCFF800RBP, ENCFF936PNG 1142 ENCODE Processing Pipeline 5b51c546aa88018c712b9c54bd48e678 https://www.encodeproject.org/files/ENCFF269ZXS/@@download/ENCFF269ZXS.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF630WCU bigWig signal p-value ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 860386486 ENCODE Processing Pipeline 462e18a4950ee162ca96b6409431d080 https://www.encodeproject.org/files/ENCFF630WCU/@@download/ENCFF630WCU.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF367IMF bigWig fold change over control ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 738497551 ENCODE Processing Pipeline 962c94dbadf85966d29af5d04eebf353 https://www.encodeproject.org/files/ENCFF367IMF/@@download/ENCFF367IMF.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF358DPQ bigWig fold change over control ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 463500617 ENCODE Processing Pipeline 93edb1e499af9f81596d611672c10903 https://www.encodeproject.org/files/ENCFF358DPQ/@@download/ENCFF358DPQ.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF399ENJ bigBed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF936PNG 11009600 ENCODE Processing Pipeline d55c5bfa9532da6bb33bde1332add9ba https://www.encodeproject.org/files/ENCFF399ENJ/@@download/ENCFF399ENJ.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF843OEI bigBed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF265CLS 10265752 ENCODE Processing Pipeline bf5a3b8d33c6f375470e45b67a266548 https://www.encodeproject.org/files/ENCFF843OEI/@@download/ENCFF843OEI.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF265CLS bed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF241CAL, ENCFF383IWZ, ENCFF676LVI 4693469 ENCODE Processing Pipeline 08c019b8c4f8466dbc1dcbab05db3ba1 https://www.encodeproject.org/files/ENCFF265CLS/@@download/ENCFF265CLS.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF930CBF bigBed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF800RBP 10652144 ENCODE Processing Pipeline 01566b2ac35a6a498a2438e532892f21 https://www.encodeproject.org/files/ENCFF930CBF/@@download/ENCFF930CBF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF936PNG bed narrowPeak peaks and background as input for IDR ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF676LVI, ENCFF877FAL 5241205 ENCODE Processing Pipeline 9768756294034f956a02aae587219ff2 https://www.encodeproject.org/files/ENCFF936PNG/@@download/ENCFF936PNG.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF561IKF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF565YYF 53961 ENCODE Processing Pipeline 10fc0f1f617023cbf12df65360ef0031 https://www.encodeproject.org/files/ENCFF561IKF/@@download/ENCFF561IKF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF075GOF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF269ZXS 70029 ENCODE Processing Pipeline 2842462d85a5792188507a767979ca44 https://www.encodeproject.org/files/ENCFF075GOF/@@download/ENCFF075GOF.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF565YYF bed narrowPeak optimal idr thresholded peaks ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF265CLS, ENCFF547MET, ENCFF800RBP, ENCFF936PNG 6171 ENCODE Processing Pipeline 06efade9a272737e19815745652f0097 https://www.encodeproject.org/files/ENCFF565YYF/@@download/ENCFF565YYF.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001IHS bigBed narrowPeak peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVJ 146157 Barbara Wold, Caltech 30e04897fcc11bffae2eb7a4b0b2519e https://www.encodeproject.org/files/ENCFF001IHS/@@download/ENCFF001IHS.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IHU bigWig signal ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHV 143334792 Barbara Wold, Caltech cef3546161879e2876feb21be3c9d40c https://www.encodeproject.org/files/ENCFF001IHU/@@download/ENCFF001IHU.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IHV bam alignments ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIV 1731550511 Barbara Wold, Caltech 0364724d23f03e881d679034106c0ff4 https://www.encodeproject.org/files/ENCFF001IHV/@@download/ENCFF001IHV.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IIV fastq reads ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1784114238 Barbara Wold, Caltech d2a3a76954e1b731276404dd7837b5cd https://www.encodeproject.org/files/ENCFF001IIV/@@download/ENCFF001IIV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001XVJ bed narrowPeak peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHV 55391 Barbara Wold, Caltech c0813e5ef9d42f8d98ab2833dc3484c5 https://www.encodeproject.org/files/ENCFF001XVJ/@@download/ENCFF001XVJ.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF900XRH bam unfiltered alignments ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIV, ENCFF018NEO 1822059545 ENCODE Processing Pipeline 214810f1f7128707ad5ce76763b30acd https://www.encodeproject.org/files/ENCFF900XRH/@@download/ENCFF900XRH.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF048NTI bam alignments ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIV, ENCFF018NEO 885065243 ENCODE Processing Pipeline 0342ec4399fe5f7fd3b8cb6e64fabfde https://www.encodeproject.org/files/ENCFF048NTI/@@download/ENCFF048NTI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF004OJP bigWig signal p-value ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF048NTI, ENCFF993HAY 319670161 ENCODE Processing Pipeline a03958ed8754db02d5ffd3ec9fb0efb4 https://www.encodeproject.org/files/ENCFF004OJP/@@download/ENCFF004OJP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF855MMD bigBed narrowPeak peaks and background as input for IDR ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF239VTI 8236140 ENCODE Processing Pipeline f3126bc4fb330f15202b1ce4adcef1b0 https://www.encodeproject.org/files/ENCFF855MMD/@@download/ENCFF855MMD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF897BZI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF239VTI, ENCFF547MET 143586 ENCODE Processing Pipeline 03e6d94fb5a6e3ea52dc4dc56d0fb668 https://www.encodeproject.org/files/ENCFF897BZI/@@download/ENCFF897BZI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF122ZAR bigWig fold change over control ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF048NTI, ENCFF993HAY 287535685 ENCODE Processing Pipeline 32c140159a331002939e1dc371c704be https://www.encodeproject.org/files/ENCFF122ZAR/@@download/ENCFF122ZAR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF239VTI bed narrowPeak peaks and background as input for IDR ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF048NTI, ENCFF993HAY 3757644 ENCODE Processing Pipeline 27610289bf44a3ddf77a7482b1ec0305 https://www.encodeproject.org/files/ENCFF239VTI/@@download/ENCFF239VTI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF138PXA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF897BZI 274584 ENCODE Processing Pipeline 948827e95bbaa5a2b856fdbd4aac4230 https://www.encodeproject.org/files/ENCFF138PXA/@@download/ENCFF138PXA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IEA fastq reads ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 92251626 Barbara Wold, Caltech a39a1646be260869aebd1524b8d40f08 https://www.encodeproject.org/files/ENCFF001IEA/@@download/ENCFF001IEA.fastq.gz Illumina Genome Analyzer II released low read depth insufficient read length ENCFF001IEF bigWig signal ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 ENCFF001IEN 162948573 Barbara Wold, Caltech 8b2dd98220ee07539ac553f7ca722341 https://www.encodeproject.org/files/ENCFF001IEF/@@download/ENCFF001IEF.bigWig mm9 released low read depth insufficient read length ENCFF001IEN bam alignments ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 ENCFF001IEA, ENCFF001IEB, ENCFF001IEC, ENCFF001IED, ENCFF001IEE 2501348567 Barbara Wold, Caltech 5e820f2d2fe2ccd4dfac1cbb341be36b https://www.encodeproject.org/files/ENCFF001IEN/@@download/ENCFF001IEN.bam mm9 released low read depth insufficient read length ENCFF001IEC fastq reads ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 544461243 Barbara Wold, Caltech d8b6f206bd378e242bc51eb0241aa3c1 https://www.encodeproject.org/files/ENCFF001IEC/@@download/ENCFF001IEC.fastq.gz Illumina Genome Analyzer II released low read depth insufficient read length ENCFF001IEB fastq reads ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 573855155 Barbara Wold, Caltech 404ad1c6fc84c2f2dfb6311c66182941 https://www.encodeproject.org/files/ENCFF001IEB/@@download/ENCFF001IEB.fastq.gz Illumina Genome Analyzer II released low read depth insufficient read length ENCFF001IED fastq reads ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 579243394 Barbara Wold, Caltech 3e399079ac1cc8e9f55091258fb0090c https://www.encodeproject.org/files/ENCFF001IED/@@download/ENCFF001IED.fastq.gz Illumina Genome Analyzer II released low read depth insufficient read length ENCFF001IEE fastq reads ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 567381880 Barbara Wold, Caltech 520ada76404ab0f958386701fb7582a3 https://www.encodeproject.org/files/ENCFF001IEE/@@download/ENCFF001IEE.fastq.gz Illumina Genome Analyzer II released low read depth insufficient read length ENCFF177BFR bam unfiltered alignments ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 ENCFF001IEA, ENCFF001IEB, ENCFF001IEC, ENCFF001IED, ENCFF001IEE, ENCFF806TVZ 2632266501 ENCODE Processing Pipeline 6a5f3e498f3e05b0678cd9e0c93a5d4c https://www.encodeproject.org/files/ENCFF177BFR/@@download/ENCFF177BFR.bam mm10-minimal archived low read depth insufficient read length ENCFF637XMC bam unfiltered alignments ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 32 ENCFF001IEA, ENCFF001IEB, ENCFF001IEC, ENCFF001IED, ENCFF001IEE, ENCFF018NEO 2634489097 ENCODE Processing Pipeline 1aa08f142c4766e3a434930767d3e000 https://www.encodeproject.org/files/ENCFF637XMC/@@download/ENCFF637XMC.bam mm10 released low read depth insufficient read length ENCFF258NUS bam alignments ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 32 ENCFF001IEA, ENCFF001IEB, ENCFF001IEC, ENCFF001IED, ENCFF001IEE, ENCFF018NEO 817258349 ENCODE Processing Pipeline 1bcf4e9fe52a21c433be9b3a82c062a4 https://www.encodeproject.org/files/ENCFF258NUS/@@download/ENCFF258NUS.bam mm10 released low read depth insufficient read length ENCFF001NAB bam alignments ENCSR000AHG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001NCL 358596749 Sherman Weissman, Yale 95464feddcd94b340fa28a1d3eb95f9f https://www.encodeproject.org/files/ENCFF001NAB/@@download/ENCFF001NAB.bam mm9 archived low read length biological replicates with identical biosample ENCFF001NAC bigBed narrowPeak peaks ENCSR000AHG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YHK 800981 Sherman Weissman, Yale 987fef96fd97c62d0ca5588f5824900e https://www.encodeproject.org/files/ENCFF001NAC/@@download/ENCFF001NAC.bigBed mm9 archived low read length biological replicates with identical biosample ENCFF001NAD bam alignments ENCSR000AHG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001NCN 264899622 Sherman Weissman, Yale c5840f0df57d5fcd4c5b8de1dd34b3be https://www.encodeproject.org/files/ENCFF001NAD/@@download/ENCFF001NAD.bam mm9 archived low read length biological replicates with identical biosample ENCFF001NBS bigWig signal ENCSR000AHG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001NAB, ENCFF001NAD 221151153 Sherman Weissman, Yale a3a54988c3d5e71d617a3e79cddeb4cf https://www.encodeproject.org/files/ENCFF001NBS/@@download/ENCFF001NBS.bigWig mm9 archived low read length biological replicates with identical biosample ENCFF001NCL fastq reads ENCSR000AHG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 910874966 Sherman Weissman, Yale 1490b45485453234e689a4048b4945eb https://www.encodeproject.org/files/ENCFF001NCL/@@download/ENCFF001NCL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NDX/ archived low read length biological replicates with identical biosample ENCFF001NCN fastq reads ENCSR000AHG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 899414729 Sherman Weissman, Yale 6ea1d99c2036a998cf564208af9166bd https://www.encodeproject.org/files/ENCFF001NCN/@@download/ENCFF001NCN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NDX/ archived low read length biological replicates with identical biosample ENCFF001YHK bed narrowPeak peaks ENCSR000AHG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001NAB, ENCFF001NAD 357982 Sherman Weissman, Yale 43499fdbb651df0503e064cb176c6c61 https://www.encodeproject.org/files/ENCFF001YHK/@@download/ENCFF001YHK.bed.gz mm9 archived low read length biological replicates with identical biosample ENCFF002DRN fastq reads ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 2 36 single-ended 517080471 Bing Ren, UCSD f34d5440d504b2732c394850c48db46a SRA:SRR3652902 https://www.encodeproject.org/files/ENCFF002DRN/@@download/ENCFF002DRN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APS/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRQ fastq reads ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 36 single-ended 517420604 Bing Ren, UCSD e61b2a678387bedf6cbb904822bb5666 SRA:SRR3652899 https://www.encodeproject.org/files/ENCFF002DRQ/@@download/ENCFF002DRQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APR/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRR fastq reads ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 3 36 single-ended 946684476 Bing Ren, UCSD a1bed6362c571985fac35b6ed8f08768 SRA:SRR3652903 https://www.encodeproject.org/files/ENCFF002DRR/@@download/ENCFF002DRR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APS/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRT fastq reads ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 36 single-ended 475793013 Bing Ren, UCSD 137d72245fb7c0e7a22077f218aa49f3 SRA:SRR3652904 https://www.encodeproject.org/files/ENCFF002DRT/@@download/ENCFF002DRT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APS/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRU fastq reads ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 3 36 single-ended 1270110616 Bing Ren, UCSD 8a364c4463f6f19c20b4aa3ca9453c18 SRA:SRR3652900 https://www.encodeproject.org/files/ENCFF002DRU/@@download/ENCFF002DRU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APR/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRW fastq reads ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 2 36 single-ended 606983502 Bing Ren, UCSD 03eab6a9c9178b79b8c7e79de3700d54 SRA:SRR3652901 https://www.encodeproject.org/files/ENCFF002DRW/@@download/ENCFF002DRW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APR/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF822ZJP bam alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF002DRN, ENCFF002DRR, ENCFF002DRT, ENCFF806TVZ 934129047 ENCODE Processing Pipeline c0e003e862caea6adcc57090c0f02f03 https://www.encodeproject.org/files/ENCFF822ZJP/@@download/ENCFF822ZJP.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF434RMS bam alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF002DRQ, ENCFF002DRU, ENCFF002DRW, ENCFF806TVZ 1064644180 ENCODE Processing Pipeline aafb6c5aebfb9b4ce72b5726fa5e593b https://www.encodeproject.org/files/ENCFF434RMS/@@download/ENCFF434RMS.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF547BFF bed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF126APW, ENCFF822ZJP 585618 ENCODE Processing Pipeline cad819aa127f11d4d31f657e1f849d12 https://www.encodeproject.org/files/ENCFF547BFF/@@download/ENCFF547BFF.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF919WVP bed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF126APW, ENCFF434RMS, ENCFF893KXG 801189 ENCODE Processing Pipeline 57fdba996d113127fe716961beecec1c https://www.encodeproject.org/files/ENCFF919WVP/@@download/ENCFF919WVP.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF227TKQ bed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF126APW, ENCFF434RMS, ENCFF822ZJP, ENCFF893KXG 1128918 ENCODE Processing Pipeline 6b83aae58e6e499b34388eff1343401d https://www.encodeproject.org/files/ENCFF227TKQ/@@download/ENCFF227TKQ.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF650ROD bigBed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF919WVP 1810857 ENCODE Processing Pipeline 5cee26be71e9e462b27c07343e2a1810 https://www.encodeproject.org/files/ENCFF650ROD/@@download/ENCFF650ROD.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF637DEM bigBed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF227TKQ 2333889 ENCODE Processing Pipeline 915b646c1a7f12eff13497cead05a3bc https://www.encodeproject.org/files/ENCFF637DEM/@@download/ENCFF637DEM.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF284FNT bigBed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF547BFF 1376030 ENCODE Processing Pipeline f38ab504ce544b1cdf0f4546e460e06f https://www.encodeproject.org/files/ENCFF284FNT/@@download/ENCFF284FNT.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF455YET bigWig signal p-value ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF126APW, ENCFF822ZJP 431194869 ENCODE Processing Pipeline ba1dfa1cd81b45816f354eebbd7b051b https://www.encodeproject.org/files/ENCFF455YET/@@download/ENCFF455YET.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF725WNT bigWig signal p-value ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF126APW, ENCFF434RMS, ENCFF893KXG 544472294 ENCODE Processing Pipeline 9c7587e1c9e7a5b06ed27cd00ad28fc5 https://www.encodeproject.org/files/ENCFF725WNT/@@download/ENCFF725WNT.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF865NCJ bigWig signal p-value ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF126APW, ENCFF434RMS, ENCFF822ZJP, ENCFF893KXG 677246109 ENCODE Processing Pipeline 51ca3971bea8336893ec753e35127cb9 https://www.encodeproject.org/files/ENCFF865NCJ/@@download/ENCFF865NCJ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF760DWM bigWig fold change over control ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF126APW, ENCFF822ZJP 445833307 ENCODE Processing Pipeline 707ecbbb5c4ab08b6099e1d470f8a92f https://www.encodeproject.org/files/ENCFF760DWM/@@download/ENCFF760DWM.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF067LBM bigWig fold change over control ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF126APW, ENCFF434RMS, ENCFF893KXG 613216964 ENCODE Processing Pipeline f5f36d3223075329201ec454dd552ff0 https://www.encodeproject.org/files/ENCFF067LBM/@@download/ENCFF067LBM.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF258HBB bigWig fold change over control ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF126APW, ENCFF434RMS, ENCFF822ZJP, ENCFF893KXG 853404936 ENCODE Processing Pipeline 2462dde808f4e7ebf4be0f5a67d3df7a https://www.encodeproject.org/files/ENCFF258HBB/@@download/ENCFF258HBB.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF166ACO bigBed narrowPeak replicated peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF108POT 1003229 ENCODE Processing Pipeline acfda82c11fe55cd7660bf48946853dc https://www.encodeproject.org/files/ENCFF166ACO/@@download/ENCFF166ACO.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF108POT bed narrowPeak replicated peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF227TKQ, ENCFF547BFF, ENCFF919WVP 477278 ENCODE Processing Pipeline 7f812905eb92fb002df92cbacdd47084 https://www.encodeproject.org/files/ENCFF108POT/@@download/ENCFF108POT.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF832OWT bam unfiltered alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DRN, ENCFF002DRR, ENCFF002DRT, ENCFF018NEO 2431770723 ENCODE Processing Pipeline 0b6bba243012a56b3bfea6ce9f2c099c https://www.encodeproject.org/files/ENCFF832OWT/@@download/ENCFF832OWT.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF259PGR bam unfiltered alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRQ, ENCFF002DRU, ENCFF002DRW, ENCFF018NEO 2957681118 ENCODE Processing Pipeline b12e40e1e722936938a385edbaa7bd82 https://www.encodeproject.org/files/ENCFF259PGR/@@download/ENCFF259PGR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF034IZG bam alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRQ, ENCFF002DRU, ENCFF002DRW, ENCFF018NEO 1064081481 ENCODE Processing Pipeline 06ea27bcf7a7bfcf82e8f6039eccadbc https://www.encodeproject.org/files/ENCFF034IZG/@@download/ENCFF034IZG.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF410KJU bam alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DRN, ENCFF002DRR, ENCFF002DRT, ENCFF018NEO 933549719 ENCODE Processing Pipeline 0a86a80022632d40bcd5879f504363b3 https://www.encodeproject.org/files/ENCFF410KJU/@@download/ENCFF410KJU.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF945XEV bed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF410KJU, ENCFF921XQX 655777 ENCODE Processing Pipeline 6640624b772ba61aca4cd5e049daa54b https://www.encodeproject.org/files/ENCFF945XEV/@@download/ENCFF945XEV.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF735WBW bed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF034IZG, ENCFF255XXC, ENCFF921XQX 804746 ENCODE Processing Pipeline 5062a09659687f5190c574e97fc95586 https://www.encodeproject.org/files/ENCFF735WBW/@@download/ENCFF735WBW.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF800CDW bed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF034IZG, ENCFF255XXC, ENCFF410KJU, ENCFF921XQX 1229166 ENCODE Processing Pipeline ffb3c049a7cabb65bb6e156815a109ff https://www.encodeproject.org/files/ENCFF800CDW/@@download/ENCFF800CDW.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF663GXO bigBed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF945XEV 1505059 ENCODE Processing Pipeline c5712237a23349cfdb5535d02cd6ce8a https://www.encodeproject.org/files/ENCFF663GXO/@@download/ENCFF663GXO.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF101BGG bigBed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF735WBW 1817904 ENCODE Processing Pipeline 7bb8279128a63d0510f03dbbf7b3db5d https://www.encodeproject.org/files/ENCFF101BGG/@@download/ENCFF101BGG.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF417JIK bigBed narrowPeak peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF800CDW 2496625 ENCODE Processing Pipeline eeede4ee272d66d64a5d3cceb0b63798 https://www.encodeproject.org/files/ENCFF417JIK/@@download/ENCFF417JIK.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF520SHZ bigWig signal p-value ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF410KJU, ENCFF921XQX 455169389 ENCODE Processing Pipeline 2207a049c7cb9aed35518157e8c00e2e https://www.encodeproject.org/files/ENCFF520SHZ/@@download/ENCFF520SHZ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF503HHQ bigWig signal p-value ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF034IZG, ENCFF255XXC, ENCFF921XQX 533716615 ENCODE Processing Pipeline 9c8373d394b74fe2c8fe6896f392cb27 https://www.encodeproject.org/files/ENCFF503HHQ/@@download/ENCFF503HHQ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF480ZMR bigWig signal p-value ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF034IZG, ENCFF255XXC, ENCFF410KJU, ENCFF921XQX 775196926 ENCODE Processing Pipeline 93cf58652bb39b18fe790f2c940a6754 https://www.encodeproject.org/files/ENCFF480ZMR/@@download/ENCFF480ZMR.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF052ZSR bigWig fold change over control ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF410KJU, ENCFF921XQX 454029567 ENCODE Processing Pipeline 055475c42f7f108056e66b5bb3babb4e https://www.encodeproject.org/files/ENCFF052ZSR/@@download/ENCFF052ZSR.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF022OVS bigWig fold change over control ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF034IZG, ENCFF255XXC, ENCFF921XQX 612172604 ENCODE Processing Pipeline 7492820e4506502416c3adf0ee8b9aa9 https://www.encodeproject.org/files/ENCFF022OVS/@@download/ENCFF022OVS.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF933OKD bigWig fold change over control ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF034IZG, ENCFF255XXC, ENCFF410KJU, ENCFF921XQX 892772886 ENCODE Processing Pipeline 9cc716b8251af610758c91622351d097 https://www.encodeproject.org/files/ENCFF933OKD/@@download/ENCFF933OKD.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF518UQD bed narrowPeak replicated peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF735WBW, ENCFF800CDW, ENCFF945XEV 487031 ENCODE Processing Pipeline eaaef9aebf676bc905823a778810e1db https://www.encodeproject.org/files/ENCFF518UQD/@@download/ENCFF518UQD.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF237RSC bigBed narrowPeak replicated peaks ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF518UQD 1003562 ENCODE Processing Pipeline 4d4887d9625c43e8a2ed1f7f7b9eef18 https://www.encodeproject.org/files/ENCFF237RSC/@@download/ENCFF237RSC.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF001HZL bam alignments ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001HZN, ENCFF001HZO, ENCFF001HZP, ENCFF001HZQ 1643310390 Barbara Wold, Caltech 424b9a2f7419f23314b40faabdeb204c https://www.encodeproject.org/files/ENCFF001HZL/@@download/ENCFF001HZL.bam mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001HZM bigBed narrowPeak peaks ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUJ 245345 Barbara Wold, Caltech 5a7548c83d84a1aa804bc48507b629d2 https://www.encodeproject.org/files/ENCFF001HZM/@@download/ENCFF001HZM.bigBed mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001HZN fastq reads ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 296926782 Barbara Wold, Caltech 9b0a23efab9dc051f44a27c2efe7154e https://www.encodeproject.org/files/ENCFF001HZN/@@download/ENCFF001HZN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001HZO fastq reads ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 320243764 Barbara Wold, Caltech 6b234f6e43ac3bae0099bca0d5cfc1cb https://www.encodeproject.org/files/ENCFF001HZO/@@download/ENCFF001HZO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001HZP fastq reads ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 442840614 Barbara Wold, Caltech 0d5fe56fbaba99aa081e1e085551ce28 https://www.encodeproject.org/files/ENCFF001HZP/@@download/ENCFF001HZP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001HZQ fastq reads ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 423715803 Barbara Wold, Caltech ee85db3ef735cd1aa379f0c935822e87 https://www.encodeproject.org/files/ENCFF001HZQ/@@download/ENCFF001HZQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001HZR bigWig signal ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZL 176002667 Barbara Wold, Caltech a9bd0f121d05bf0ec5696c25e0f4bf80 https://www.encodeproject.org/files/ENCFF001HZR/@@download/ENCFF001HZR.bigWig mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001XUJ bed narrowPeak peaks ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZL 141079 Barbara Wold, Caltech bc292026c1bd7e1f648d04ceb973f4ae https://www.encodeproject.org/files/ENCFF001XUJ/@@download/ENCFF001XUJ.bed.gz mm9 released low read depth insufficient read length, control insufficient read depth ENCFF660HYV bam alignments ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001HZN, ENCFF001HZO, ENCFF001HZP, ENCFF001HZQ, ENCFF018NEO 814803381 ENCODE Processing Pipeline e7637dd8c18d465975cfe3b01bef9426 https://www.encodeproject.org/files/ENCFF660HYV/@@download/ENCFF660HYV.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF986JTW bam unfiltered alignments ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001HZN, ENCFF001HZO, ENCFF001HZP, ENCFF001HZQ, ENCFF018NEO 1748652015 ENCODE Processing Pipeline 764fe6a27af5bc1cad7b2babd2a984bd https://www.encodeproject.org/files/ENCFF986JTW/@@download/ENCFF986JTW.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF051PNV bed narrowPeak peaks ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF122QLV, ENCFF660HYV 452960 ENCODE Processing Pipeline 3798c196891aeddcb24d4f9a7b100048 https://www.encodeproject.org/files/ENCFF051PNV/@@download/ENCFF051PNV.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF464XEU bigBed narrowPeak peaks ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF051PNV 1609055 ENCODE Processing Pipeline df83883c7d095b77614757045a6590a5 https://www.encodeproject.org/files/ENCFF464XEU/@@download/ENCFF464XEU.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF222EBN bigWig fold change over control ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF122QLV, ENCFF660HYV 287589967 ENCODE Processing Pipeline 9414720e3d38962094cef5f81b260c50 https://www.encodeproject.org/files/ENCFF222EBN/@@download/ENCFF222EBN.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF385QTJ bed narrowPeak stable peaks ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF051PNV 415337 ENCODE Processing Pipeline ccfbf718f3bbbbe4d320a54ec1762ed3 https://www.encodeproject.org/files/ENCFF385QTJ/@@download/ENCFF385QTJ.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF144GEP bigBed narrowPeak stable peaks ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF385QTJ 1223550 ENCODE Processing Pipeline 323995d2f75303ab25f440c5e22b7c39 https://www.encodeproject.org/files/ENCFF144GEP/@@download/ENCFF144GEP.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF841DAO bigWig signal p-value ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF122QLV, ENCFF660HYV 182995534 ENCODE Processing Pipeline 22c61f2f412e6a8f1b3bf3b6158a2c0b https://www.encodeproject.org/files/ENCFF841DAO/@@download/ENCFF841DAO.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF002AMM fastq reads ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1185431823 Bing Ren, UCSD f5e5904b8c787529d2f8987ca80278c9 SRA:SRR3651530 https://www.encodeproject.org/files/ENCFF002AMM/@@download/ENCFF002AMM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released low read length, inconsistent control read length, low read depth ENCFF002AMN fastq reads ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1242760796 Bing Ren, UCSD 29c43e663d4ec995fa72ecafc19612f8 SRA:SRR3651531 https://www.encodeproject.org/files/ENCFF002AMN/@@download/ENCFF002AMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQF/ released low read length, inconsistent control read length, low read depth ENCFF255PTZ bam alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMM, ENCFF806TVZ 805654217 ENCODE Processing Pipeline 40ac6006a1f4f51bfa84c756991d2a94 https://www.encodeproject.org/files/ENCFF255PTZ/@@download/ENCFF255PTZ.bam mm10-minimal archived low read length, low read depth ENCFF349ZED bam alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMN, ENCFF806TVZ 838218567 ENCODE Processing Pipeline 1a416cf92b1f3f62ac187036ddf71ae1 https://www.encodeproject.org/files/ENCFF349ZED/@@download/ENCFF349ZED.bam mm10-minimal archived low read length, low read depth ENCFF424MNH bigBed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF718UOR 1721203 ENCODE Processing Pipeline b2f4ce2d4e2b12b2c37274e990a4d3be https://www.encodeproject.org/files/ENCFF424MNH/@@download/ENCFF424MNH.bigBed mm10-minimal archived low read length, low read depth ENCFF090VFS bed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255PTZ, ENCFF462HQE 491751 ENCODE Processing Pipeline 12d100ca3c1c0a56c962209aaf910de6 https://www.encodeproject.org/files/ENCFF090VFS/@@download/ENCFF090VFS.bed.gz mm10-minimal archived low read length, low read depth ENCFF718UOR bed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF349ZED, ENCFF868CEP 513440 ENCODE Processing Pipeline 7cd920ab0522e11899e18610f13b00d4 https://www.encodeproject.org/files/ENCFF718UOR/@@download/ENCFF718UOR.bed.gz mm10-minimal archived low read length, low read depth ENCFF146JFC bigBed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF090VFS 1664351 ENCODE Processing Pipeline 45a6587e237de770ad73de526fc792f5 https://www.encodeproject.org/files/ENCFF146JFC/@@download/ENCFF146JFC.bigBed mm10-minimal archived low read length, low read depth ENCFF517MKP bigBed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF092XGV 1763810 ENCODE Processing Pipeline 7cb173f9a2312733406924c7563deb76 https://www.encodeproject.org/files/ENCFF517MKP/@@download/ENCFF517MKP.bigBed mm10-minimal archived low read length, low read depth ENCFF092XGV bed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255PTZ, ENCFF349ZED, ENCFF462HQE, ENCFF868CEP 539007 ENCODE Processing Pipeline 600f8e79c25d73fe60a2660869f6a448 https://www.encodeproject.org/files/ENCFF092XGV/@@download/ENCFF092XGV.bed.gz mm10-minimal archived low read length, low read depth ENCFF887FQA bigWig signal p-value ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255PTZ, ENCFF462HQE 370672596 ENCODE Processing Pipeline 32b006da2957bf133836b461b8a04033 https://www.encodeproject.org/files/ENCFF887FQA/@@download/ENCFF887FQA.bigWig mm10-minimal archived low read length, low read depth ENCFF600QLV bigWig signal p-value ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF349ZED, ENCFF868CEP 305610076 ENCODE Processing Pipeline a0f7e8f00921c62d8a43d7db0fd41af0 https://www.encodeproject.org/files/ENCFF600QLV/@@download/ENCFF600QLV.bigWig mm10-minimal archived low read length, low read depth ENCFF117YHU bigWig signal p-value ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255PTZ, ENCFF349ZED, ENCFF462HQE, ENCFF868CEP 619252519 ENCODE Processing Pipeline fffe8883bf374a96dc9223ca0a45b172 https://www.encodeproject.org/files/ENCFF117YHU/@@download/ENCFF117YHU.bigWig mm10-minimal archived low read length, low read depth ENCFF904TTF bigWig fold change over control ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255PTZ, ENCFF462HQE 341574177 ENCODE Processing Pipeline 11c9572ee041cf5fe7c048c6e6ca998c https://www.encodeproject.org/files/ENCFF904TTF/@@download/ENCFF904TTF.bigWig mm10-minimal archived low read length, low read depth ENCFF336UHU bigWig fold change over control ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF349ZED, ENCFF868CEP 329410905 ENCODE Processing Pipeline c9ab7c98d126959693da3d05572035da https://www.encodeproject.org/files/ENCFF336UHU/@@download/ENCFF336UHU.bigWig mm10-minimal archived low read length, low read depth ENCFF779PWU bigWig fold change over control ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255PTZ, ENCFF349ZED, ENCFF462HQE, ENCFF868CEP 619250243 ENCODE Processing Pipeline 2d10188059be7418af0225ea7671d25a https://www.encodeproject.org/files/ENCFF779PWU/@@download/ENCFF779PWU.bigWig mm10-minimal archived low read length, low read depth ENCFF899PUD bed narrowPeak replicated peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF090VFS, ENCFF092XGV, ENCFF718UOR 605232 ENCODE Processing Pipeline d955d7e762cccf422925edcb1c8c2871 https://www.encodeproject.org/files/ENCFF899PUD/@@download/ENCFF899PUD.bed.gz mm10-minimal archived low read length, low read depth ENCFF918DRV bigBed narrowPeak replicated peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF899PUD 1526083 ENCODE Processing Pipeline 88df858364909b3b615f7e94fbf44269 https://www.encodeproject.org/files/ENCFF918DRV/@@download/ENCFF918DRV.bigBed mm10-minimal archived low read length, low read depth ENCFF880XIY bam unfiltered alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMM, ENCFF018NEO 1194321052 ENCODE Processing Pipeline d82b7dd41ffb41441466c4bdf12120e0 https://www.encodeproject.org/files/ENCFF880XIY/@@download/ENCFF880XIY.bam mm10 released low read length, low read depth ENCFF101XRT bam unfiltered alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMN, ENCFF018NEO 1248489279 ENCODE Processing Pipeline 928ae49be3a8707b98e5ed613106e234 https://www.encodeproject.org/files/ENCFF101XRT/@@download/ENCFF101XRT.bam mm10 released low read length, low read depth ENCFF358KVN bam alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMM, ENCFF018NEO 805494614 ENCODE Processing Pipeline 6f306637b6903d5916231816d4d65a82 https://www.encodeproject.org/files/ENCFF358KVN/@@download/ENCFF358KVN.bam mm10 released low read length, low read depth ENCFF074NXM bam alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMN, ENCFF018NEO 838060457 ENCODE Processing Pipeline 1ea332c1f10dd5df0912925ad68f930d https://www.encodeproject.org/files/ENCFF074NXM/@@download/ENCFF074NXM.bam mm10 released low read length, low read depth ENCFF615OON bed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF358KVN, ENCFF598OHC 497212 ENCODE Processing Pipeline d4844f3b330d4b44d15a433927b3270e https://www.encodeproject.org/files/ENCFF615OON/@@download/ENCFF615OON.bed.gz mm10 released low read length, low read depth ENCFF266RIF bed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF074NXM, ENCFF358KVN, ENCFF383CGK, ENCFF598OHC 551419 ENCODE Processing Pipeline 50a11d7515947330a9fae9f64f486b50 https://www.encodeproject.org/files/ENCFF266RIF/@@download/ENCFF266RIF.bed.gz mm10 released low read length, low read depth ENCFF659PNG bed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF074NXM, ENCFF383CGK 514827 ENCODE Processing Pipeline ada3f2912bd1595867d0b8ee94477ded https://www.encodeproject.org/files/ENCFF659PNG/@@download/ENCFF659PNG.bed.gz mm10 released low read length, low read depth ENCFF233TON bigBed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF615OON 1670810 ENCODE Processing Pipeline 55eba4de8af9d8ac8e88a1a2a77cd2bc https://www.encodeproject.org/files/ENCFF233TON/@@download/ENCFF233TON.bigBed mm10 released low read length, low read depth ENCFF748IZQ bigBed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF659PNG 1716321 ENCODE Processing Pipeline a4dd649849cdee82c79c45e1391cdf6a https://www.encodeproject.org/files/ENCFF748IZQ/@@download/ENCFF748IZQ.bigBed mm10 released low read length, low read depth ENCFF399ETL bigWig signal p-value ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF358KVN, ENCFF598OHC 360690593 ENCODE Processing Pipeline 7488540059b338fb18d94951f3b4a4ec https://www.encodeproject.org/files/ENCFF399ETL/@@download/ENCFF399ETL.bigWig mm10 released low read length, low read depth ENCFF423SXF bigBed narrowPeak peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF266RIF 1773117 ENCODE Processing Pipeline a93373a71e51b1926d160dec74b36c02 https://www.encodeproject.org/files/ENCFF423SXF/@@download/ENCFF423SXF.bigBed mm10 released low read length, low read depth ENCFF862BAL bigWig signal p-value ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF074NXM, ENCFF383CGK 292428166 ENCODE Processing Pipeline 0a4645aa74474b8c97e2708fd1080ab1 https://www.encodeproject.org/files/ENCFF862BAL/@@download/ENCFF862BAL.bigWig mm10 released low read length, low read depth ENCFF685ZGY bigWig signal p-value ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF074NXM, ENCFF358KVN, ENCFF383CGK, ENCFF598OHC 580809938 ENCODE Processing Pipeline 43bbac455d3d3aa67e8b1c831c4152ee https://www.encodeproject.org/files/ENCFF685ZGY/@@download/ENCFF685ZGY.bigWig mm10 released low read length, low read depth ENCFF502WXV bigWig fold change over control ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF358KVN, ENCFF598OHC 344512050 ENCODE Processing Pipeline 9ea853f8c2818332f0cdc1160595d7a1 https://www.encodeproject.org/files/ENCFF502WXV/@@download/ENCFF502WXV.bigWig mm10 released low read length, low read depth ENCFF554WBW bigWig fold change over control ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF074NXM, ENCFF383CGK 324531908 ENCODE Processing Pipeline 03f1250c6d29fbe26aacd279b736303f https://www.encodeproject.org/files/ENCFF554WBW/@@download/ENCFF554WBW.bigWig mm10 released low read length, low read depth ENCFF994FKT bigWig fold change over control ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF074NXM, ENCFF358KVN, ENCFF383CGK, ENCFF598OHC 667051697 ENCODE Processing Pipeline e327365088eda1a6034a5c64534b1396 https://www.encodeproject.org/files/ENCFF994FKT/@@download/ENCFF994FKT.bigWig mm10 released low read length, low read depth ENCFF815ZSQ bigBed narrowPeak replicated peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF070OBB 1521443 ENCODE Processing Pipeline 854beb75d8d84738f3d21120a4ab983e https://www.encodeproject.org/files/ENCFF815ZSQ/@@download/ENCFF815ZSQ.bigBed mm10 released low read length, low read depth ENCFF070OBB bed narrowPeak replicated peaks ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF266RIF, ENCFF615OON, ENCFF659PNG 617052 ENCODE Processing Pipeline bb9e4aa3704b43b998751ce14dcde9fa https://www.encodeproject.org/files/ENCFF070OBB/@@download/ENCFF070OBB.bed.gz mm10 released low read length, low read depth ENCFF002AFE fastq reads ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1586088071 Bing Ren, UCSD 08e8f55dacea971cb8b83237d7da2aca SRA:SRR3651404 https://www.encodeproject.org/files/ENCFF002AFE/@@download/ENCFF002AFE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQQ/ released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF002AFJ fastq reads ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 950109707 Bing Ren, UCSD 772d8053087eb8931f201343fbbc084e SRA:SRR3651403 https://www.encodeproject.org/files/ENCFF002AFJ/@@download/ENCFF002AFJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQR/ released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity ENCFF850LJW bam alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFE, ENCFF806TVZ 1205975196 ENCODE Processing Pipeline 6eba7060f741bc38cfca1cc025f62f83 https://www.encodeproject.org/files/ENCFF850LJW/@@download/ENCFF850LJW.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF848ZBS bam alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFJ, ENCFF806TVZ 660010544 ENCODE Processing Pipeline 061598d2dadd6f66557a9773f91cdced https://www.encodeproject.org/files/ENCFF848ZBS/@@download/ENCFF848ZBS.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF278BMJ bed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF850LJW 1210429 ENCODE Processing Pipeline e75cb8adb4fc58739e2a0057ce7b66c7 https://www.encodeproject.org/files/ENCFF278BMJ/@@download/ENCFF278BMJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF651RQN bed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF848ZBS 1324575 ENCODE Processing Pipeline ce13894369a7fbe68ca9e14fedbc9052 https://www.encodeproject.org/files/ENCFF651RQN/@@download/ENCFF651RQN.bed.gz mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF059YQS bed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF791KJV, ENCFF848ZBS, ENCFF850LJW 1383759 ENCODE Processing Pipeline 836aee8ac0ccc64d0aa576fdde3b640b https://www.encodeproject.org/files/ENCFF059YQS/@@download/ENCFF059YQS.bed.gz mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF110VJL bigBed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF278BMJ 2918075 ENCODE Processing Pipeline ccfd9edde175d5ee05c0e8c5f1ce3f87 https://www.encodeproject.org/files/ENCFF110VJL/@@download/ENCFF110VJL.bigBed mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF121ROL bigBed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF651RQN 3154705 ENCODE Processing Pipeline 4120c75d0cde5b7db85335d8cf65d0a0 https://www.encodeproject.org/files/ENCFF121ROL/@@download/ENCFF121ROL.bigBed mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF263WVL bigBed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF059YQS 3249940 ENCODE Processing Pipeline ea13c5c2957cd7db80e2951c850be484 https://www.encodeproject.org/files/ENCFF263WVL/@@download/ENCFF263WVL.bigBed mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF276RAY bigWig signal p-value ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF850LJW 512525401 ENCODE Processing Pipeline 764f075513dec3deda39569d4ae6c21e https://www.encodeproject.org/files/ENCFF276RAY/@@download/ENCFF276RAY.bigWig mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF635KST bigWig signal p-value ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF791KJV, ENCFF848ZBS, ENCFF850LJW 593680802 ENCODE Processing Pipeline c9c19812a91583b0ef8289521a7730cb https://www.encodeproject.org/files/ENCFF635KST/@@download/ENCFF635KST.bigWig mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF477XXT bigWig signal p-value ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF848ZBS 501577696 ENCODE Processing Pipeline b7a2972119af6b434895f7e0f7539e7a https://www.encodeproject.org/files/ENCFF477XXT/@@download/ENCFF477XXT.bigWig mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF172MTS bigWig fold change over control ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF850LJW 487848431 ENCODE Processing Pipeline 7729de26c5151cb19a289c52ef8198f2 https://www.encodeproject.org/files/ENCFF172MTS/@@download/ENCFF172MTS.bigWig mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF754RAQ bigWig fold change over control ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF848ZBS 417683277 ENCODE Processing Pipeline 743148b96041e9c7a19e12d5dd2b34b2 https://www.encodeproject.org/files/ENCFF754RAQ/@@download/ENCFF754RAQ.bigWig mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF145FVU bigWig fold change over control ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF791KJV, ENCFF848ZBS, ENCFF850LJW 722666183 ENCODE Processing Pipeline 86410d83c6b155a14afdbe8ad318202f https://www.encodeproject.org/files/ENCFF145FVU/@@download/ENCFF145FVU.bigWig mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF044YBD bed narrowPeak replicated peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF059YQS, ENCFF278BMJ, ENCFF651RQN 952444 ENCODE Processing Pipeline 2b6526654c631894a689c6cd3fbf73e4 https://www.encodeproject.org/files/ENCFF044YBD/@@download/ENCFF044YBD.bed.gz mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF960RHA bigBed narrowPeak replicated peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF044YBD 2397972 ENCODE Processing Pipeline 44b02eee1ddc44774a55e815b281634e https://www.encodeproject.org/files/ENCFF960RHA/@@download/ENCFF960RHA.bigBed mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF184QLC bam unfiltered alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFJ, ENCFF018NEO 1105766205 ENCODE Processing Pipeline afcb7b7b051ac843b4c284aa4bce06a9 https://www.encodeproject.org/files/ENCFF184QLC/@@download/ENCFF184QLC.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF337ZDP bam unfiltered alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFE, ENCFF018NEO 1432367255 ENCODE Processing Pipeline f9eb9a8cfe75ccb3ea4883c8d932b604 https://www.encodeproject.org/files/ENCFF337ZDP/@@download/ENCFF337ZDP.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF052ZGM bam alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFJ, ENCFF018NEO 659889916 ENCODE Processing Pipeline bc35eff624cc36dd556837f4d8b1cee8 https://www.encodeproject.org/files/ENCFF052ZGM/@@download/ENCFF052ZGM.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF227EZO bam alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFE, ENCFF018NEO 934504168 ENCODE Processing Pipeline b33e0babf2d6247111365151401ade9a https://www.encodeproject.org/files/ENCFF227EZO/@@download/ENCFF227EZO.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF023SIE bed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF227EZO, ENCFF419KAT, ENCFF955BDA 1177199 ENCODE Processing Pipeline 668670918ede00874b90bc46802e8510 https://www.encodeproject.org/files/ENCFF023SIE/@@download/ENCFF023SIE.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF322DWU bed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF052ZGM, ENCFF419KAT, ENCFF955BDA 1283842 ENCODE Processing Pipeline 5894ce29032de6397380d3fd87f96ca6 https://www.encodeproject.org/files/ENCFF322DWU/@@download/ENCFF322DWU.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF302HTT bed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF052ZGM, ENCFF227EZO, ENCFF419KAT, ENCFF955BDA 1553540 ENCODE Processing Pipeline d88c30e96999e5d3cd2f51b743ecc06e https://www.encodeproject.org/files/ENCFF302HTT/@@download/ENCFF302HTT.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF565EDJ bigBed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF322DWU 3086476 ENCODE Processing Pipeline b9351e27ded0a5f1e226b7531a835a90 https://www.encodeproject.org/files/ENCFF565EDJ/@@download/ENCFF565EDJ.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF780NYV bigBed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF023SIE 2876374 ENCODE Processing Pipeline 43ab1d06144ccbfe685f9fc782e256e3 https://www.encodeproject.org/files/ENCFF780NYV/@@download/ENCFF780NYV.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF505FTP bigBed narrowPeak peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF302HTT 4529429 ENCODE Processing Pipeline 785659b31bdc6bdeae24149edc08e493 https://www.encodeproject.org/files/ENCFF505FTP/@@download/ENCFF505FTP.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF454TBB bigWig signal p-value ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF227EZO, ENCFF419KAT, ENCFF955BDA 489316612 ENCODE Processing Pipeline 3e20ca20bb988a15a2a20cd73fc74f16 https://www.encodeproject.org/files/ENCFF454TBB/@@download/ENCFF454TBB.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF761CNL bigWig signal p-value ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF052ZGM, ENCFF419KAT, ENCFF955BDA 507168309 ENCODE Processing Pipeline abbce3262436e2b0e68f8284b785edcf https://www.encodeproject.org/files/ENCFF761CNL/@@download/ENCFF761CNL.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF420BEE bigWig signal p-value ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF052ZGM, ENCFF227EZO, ENCFF419KAT, ENCFF955BDA 694052742 ENCODE Processing Pipeline f6998f736ed40f26bf04fcd16a24852a https://www.encodeproject.org/files/ENCFF420BEE/@@download/ENCFF420BEE.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF730LBK bigWig fold change over control ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF227EZO, ENCFF419KAT, ENCFF955BDA 515790197 ENCODE Processing Pipeline 450716f3aabb1ef1e3c237cd4e998157 https://www.encodeproject.org/files/ENCFF730LBK/@@download/ENCFF730LBK.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF838YKO bigWig fold change over control ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF052ZGM, ENCFF419KAT, ENCFF955BDA 406989071 ENCODE Processing Pipeline 12d168b992dbb8a73edd26fc1c271669 https://www.encodeproject.org/files/ENCFF838YKO/@@download/ENCFF838YKO.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF835DLZ bigWig fold change over control ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF052ZGM, ENCFF227EZO, ENCFF419KAT, ENCFF955BDA 741484908 ENCODE Processing Pipeline 8357ca1bc42393038d5f24b72fdfdd59 https://www.encodeproject.org/files/ENCFF835DLZ/@@download/ENCFF835DLZ.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF676TSV bed narrowPeak replicated peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF023SIE, ENCFF302HTT, ENCFF322DWU 1035005 ENCODE Processing Pipeline 2fcb804991493f9b45b038744b05eb79 https://www.encodeproject.org/files/ENCFF676TSV/@@download/ENCFF676TSV.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF348JQQ bigBed narrowPeak replicated peaks ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF676TSV 2554432 ENCODE Processing Pipeline cbbf55546a913280c8aa6a68175df596 https://www.encodeproject.org/files/ENCFF348JQQ/@@download/ENCFF348JQQ.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF001KBC bam alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KBR 1111615453 Bing Ren, UCSD f7f902c4550d883cb2d7bc0d2bb2f58e https://www.encodeproject.org/files/ENCFF001KBC/@@download/ENCFF001KBC.bam mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001KBD bigBed broadPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWI 500636 Bing Ren, UCSD 1f52ab30f32bb25309d3cbef9de0482a https://www.encodeproject.org/files/ENCFF001KBD/@@download/ENCFF001KBD.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001KBE bam alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KBQ 1078594686 Bing Ren, UCSD fb8b6bb2a21b679d16adfde390e521a8 https://www.encodeproject.org/files/ENCFF001KBE/@@download/ENCFF001KBE.bam mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001KBG bigWig signal ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KBC, ENCFF001KBE 54954732 Bing Ren, UCSD a4a892652857190b4ba95b553e317acd https://www.encodeproject.org/files/ENCFF001KBG/@@download/ENCFF001KBG.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001KBQ fastq reads ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1077598938 Bing Ren, UCSD 7c9ce398dec1c60bb063b6f193ab5381 https://www.encodeproject.org/files/ENCFF001KBQ/@@download/ENCFF001KBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCI/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001KBR fastq reads ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1130330561 Bing Ren, UCSD 12e2f10e70f7395e56dbaf38b0268a86 https://www.encodeproject.org/files/ENCFF001KBR/@@download/ENCFF001KBR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCH/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001XWI bed broadPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KBC, ENCFF001KBE 296912 Bing Ren, UCSD 6b0a600251f15c6630124fe21786a336 https://www.encodeproject.org/files/ENCFF001XWI/@@download/ENCFF001XWI.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF331PZZ bam unfiltered alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBQ, ENCFF018NEO 1121423269 ENCODE Processing Pipeline 5ff3db6cf5e3609c0cda2cc5e8f6c97c https://www.encodeproject.org/files/ENCFF331PZZ/@@download/ENCFF331PZZ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF433FDD bam unfiltered alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KBR, ENCFF018NEO 1149025211 ENCODE Processing Pipeline 11166e945fbac6158b6a04572cfe96f8 https://www.encodeproject.org/files/ENCFF433FDD/@@download/ENCFF433FDD.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF742CUI bam alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KBR, ENCFF018NEO 596863032 ENCODE Processing Pipeline 8d5a5de237e211a394958e443c11cd2d https://www.encodeproject.org/files/ENCFF742CUI/@@download/ENCFF742CUI.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF547JWX bam alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBQ, ENCFF018NEO 737514913 ENCODE Processing Pipeline 77f323397e5680a22cfc7be47669aed2 https://www.encodeproject.org/files/ENCFF547JWX/@@download/ENCFF547JWX.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF326DDW bigBed narrowPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF119JHJ 3493966 ENCODE Processing Pipeline 410d7c12587c134f67a766fde5344bc2 https://www.encodeproject.org/files/ENCFF326DDW/@@download/ENCFF326DDW.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF212PWV bigWig signal p-value ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF547JWX 330336553 ENCODE Processing Pipeline 7c001faead50400f5d13a56112e4b4f9 https://www.encodeproject.org/files/ENCFF212PWV/@@download/ENCFF212PWV.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF664APC bed narrowPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF547JWX 989234 ENCODE Processing Pipeline ee827f0b3752dd4342f85bc0987eeb82 https://www.encodeproject.org/files/ENCFF664APC/@@download/ENCFF664APC.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF170GFL bigBed narrowPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF105OII 3005349 ENCODE Processing Pipeline 48370ed8b9f6de286382ecd32e36b56c https://www.encodeproject.org/files/ENCFF170GFL/@@download/ENCFF170GFL.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF105OII bed narrowPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF742CUI 1216564 ENCODE Processing Pipeline 457a7eff25a4d01a01d6c8eca3426c93 https://www.encodeproject.org/files/ENCFF105OII/@@download/ENCFF105OII.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF562ORT bigWig signal p-value ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF742CUI 294952934 ENCODE Processing Pipeline 750dcdd6b666b6c9b5cb87379d9905bb https://www.encodeproject.org/files/ENCFF562ORT/@@download/ENCFF562ORT.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF119JHJ bed narrowPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF547JWX, ENCFF742CUI 1253884 ENCODE Processing Pipeline fdcc799e1c943a57bf9894eeb373d94f https://www.encodeproject.org/files/ENCFF119JHJ/@@download/ENCFF119JHJ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF511RAL bigBed narrowPeak peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF664APC 2770465 ENCODE Processing Pipeline f3b96a72e9af007aba2c46ca6b3a2741 https://www.encodeproject.org/files/ENCFF511RAL/@@download/ENCFF511RAL.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF664URY bigWig signal p-value ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF547JWX, ENCFF742CUI 562536727 ENCODE Processing Pipeline 48bb3f6ab8cd6ccf8b9e0cf0b23e4dc0 https://www.encodeproject.org/files/ENCFF664URY/@@download/ENCFF664URY.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF587SDE bed narrowPeak replicated peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF105OII, ENCFF119JHJ, ENCFF664APC 1082907 ENCODE Processing Pipeline 71cbb969f5bc876c93dea549c1084ac5 https://www.encodeproject.org/files/ENCFF587SDE/@@download/ENCFF587SDE.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF096TSJ bigWig fold change over control ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF742CUI 227177502 ENCODE Processing Pipeline 2b99908c3f56eae6b4218d571dbad1b8 https://www.encodeproject.org/files/ENCFF096TSJ/@@download/ENCFF096TSJ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF970NYL bigWig fold change over control ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF547JWX 254047892 ENCODE Processing Pipeline e5e6d82aef9b81c66ab10510c2c27e3c https://www.encodeproject.org/files/ENCFF970NYL/@@download/ENCFF970NYL.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF779MUQ bigBed narrowPeak replicated peaks ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF587SDE 2190280 ENCODE Processing Pipeline 6b99f1e75d0d6e047cd7c0906d133a47 https://www.encodeproject.org/files/ENCFF779MUQ/@@download/ENCFF779MUQ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF867PYD bigWig fold change over control ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF547JWX, ENCFF742CUI 524202393 ENCODE Processing Pipeline ba0d76c31dd8297496af9f88b677df0a https://www.encodeproject.org/files/ENCFF867PYD/@@download/ENCFF867PYD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF001NAM bigBed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHM 106878 Michael Snyder, Stanford 31b42a80303e926143b4d8b1b1cc6d8f https://www.encodeproject.org/files/ENCFF001NAM/@@download/ENCFF001NAM.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAN fastq reads ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1171640161 Michael Snyder, Stanford 6032a2526922239b89cd85078db206c0 https://www.encodeproject.org/files/ENCFF001NAN/@@download/ENCFF001NAN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAP fastq reads ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 965999692 Michael Snyder, Stanford e583fdd164ebfeae22db9d65e4c31cb6 https://www.encodeproject.org/files/ENCFF001NAP/@@download/ENCFF001NAP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAR bam alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 ENCFF001NAN 539887197 Michael Snyder, Stanford 774bf7695b4376124396125ca8adc29b https://www.encodeproject.org/files/ENCFF001NAR/@@download/ENCFF001NAR.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAS bigWig signal ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NAR, ENCFF001NAT 161130299 Michael Snyder, Stanford a2d0f5ae40e57f4460773f54cfb37099 https://www.encodeproject.org/files/ENCFF001NAS/@@download/ENCFF001NAS.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAT bam alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 ENCFF001NAP 444655148 Michael Snyder, Stanford 8dd6856eb708de342ba1a8a14a895f1e https://www.encodeproject.org/files/ENCFF001NAT/@@download/ENCFF001NAT.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001YHM bed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NAR, ENCFF001NAT 15666 Michael Snyder, Stanford b26a7eb106cc4a074947d893ff51f704 https://www.encodeproject.org/files/ENCFF001YHM/@@download/ENCFF001YHM.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF732MKV bam unfiltered alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAP, ENCFF018NEO 1037474846 ENCODE Processing Pipeline b9bb505e4a712a790a1ab9f1da73c135 https://www.encodeproject.org/files/ENCFF732MKV/@@download/ENCFF732MKV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF058VUV bam unfiltered alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAN, ENCFF018NEO 1303804359 ENCODE Processing Pipeline 2f15d612fb8d9a00da8f3135c50ffb1e https://www.encodeproject.org/files/ENCFF058VUV/@@download/ENCFF058VUV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF772TQZ bam alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAP, ENCFF018NEO 553092945 ENCODE Processing Pipeline 69d258365aca153e4ae722eab10f63f8 https://www.encodeproject.org/files/ENCFF772TQZ/@@download/ENCFF772TQZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF978LNE bam alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAN, ENCFF018NEO 774410562 ENCODE Processing Pipeline 6bbd6324c87c5903d8ac91dadb2b95e4 https://www.encodeproject.org/files/ENCFF978LNE/@@download/ENCFF978LNE.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF894BAX bed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF772TQZ 653187 ENCODE Processing Pipeline b69bcd9afb8de0ba7315ead5ae265cbf https://www.encodeproject.org/files/ENCFF894BAX/@@download/ENCFF894BAX.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF435SOF bigBed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF894BAX 1227546 ENCODE Processing Pipeline 4f66e2b6c5909f4ed0a7ee287c2d9e88 https://www.encodeproject.org/files/ENCFF435SOF/@@download/ENCFF435SOF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF197HEB bigWig fold change over control ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF978LNE 324953020 ENCODE Processing Pipeline 6b8c79c40332b616962ddfeef4b807d3 https://www.encodeproject.org/files/ENCFF197HEB/@@download/ENCFF197HEB.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF293JNI bed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF978LNE 105894 ENCODE Processing Pipeline 8b8e17678fc5b84f470953c4ba364c9e https://www.encodeproject.org/files/ENCFF293JNI/@@download/ENCFF293JNI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF259BKG bigWig signal p-value ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF772TQZ 313724543 ENCODE Processing Pipeline 14dd27bf1a2f5b742746c4538d2da473 https://www.encodeproject.org/files/ENCFF259BKG/@@download/ENCFF259BKG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF207SJG bed narrowPeak replicated peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF293JNI, ENCFF399QLT, ENCFF894BAX 8624 ENCODE Processing Pipeline 87cb5656ad4c1389fa536f47771a0f9c https://www.encodeproject.org/files/ENCFF207SJG/@@download/ENCFF207SJG.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF588GLR bigWig signal p-value ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF171OVT, ENCFF772TQZ, ENCFF978LNE 319305044 ENCODE Processing Pipeline 691340f7407ba072515b6a78f930b773 https://www.encodeproject.org/files/ENCFF588GLR/@@download/ENCFF588GLR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF439SMA bigWig fold change over control ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF772TQZ 257317058 ENCODE Processing Pipeline 92cbea62007d8febb9ad4cdafb76b49e https://www.encodeproject.org/files/ENCFF439SMA/@@download/ENCFF439SMA.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF399QLT bed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF171OVT, ENCFF772TQZ, ENCFF978LNE 16092 ENCODE Processing Pipeline 2593cd1376f4f68b9aac81c723e03056 https://www.encodeproject.org/files/ENCFF399QLT/@@download/ENCFF399QLT.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF217ZXT bigBed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF399QLT 112232 ENCODE Processing Pipeline c67cffd30f8d4ebae5a9bd5616212ad6 https://www.encodeproject.org/files/ENCFF217ZXT/@@download/ENCFF217ZXT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF089WYW bigWig fold change over control ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF171OVT, ENCFF772TQZ, ENCFF978LNE 504320986 ENCODE Processing Pipeline 4b2701db1f31bd4102b9159dcf07c44b https://www.encodeproject.org/files/ENCFF089WYW/@@download/ENCFF089WYW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF565JBX bigBed narrowPeak peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF293JNI 266695 ENCODE Processing Pipeline 5e767fd2ea3da449f5c8de8206cc8a8d https://www.encodeproject.org/files/ENCFF565JBX/@@download/ENCFF565JBX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF957AUR bigWig signal p-value ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF978LNE 331923569 ENCODE Processing Pipeline a817561dbf14b2756a63e70721808bee https://www.encodeproject.org/files/ENCFF957AUR/@@download/ENCFF957AUR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF648LNI bigBed narrowPeak replicated peaks ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF207SJG 93991 ENCODE Processing Pipeline b8c10ed93220eb17eabb815c838e2f7f https://www.encodeproject.org/files/ENCFF648LNI/@@download/ENCFF648LNI.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001KZR fastq reads ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 326462032 Bing Ren, UCSD 4c6becb169dc40536a73315186abd23b https://www.encodeproject.org/files/ENCFF001KZR/@@download/ENCFF001KZR.fastq.gz Illumina HiSeq 2000 /files/ENCFF786ODW/ archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF001KZM bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KZR 346841335 Bing Ren, UCSD ca1f835678f2ed5fe0471cc4582b6cb5 https://www.encodeproject.org/files/ENCFF001KZM/@@download/ENCFF001KZM.bam mm9 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF001KZN bigBed broadPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZR 558336 Bing Ren, UCSD 349ba346237b94b2f84e65314f2cfbc3 https://www.encodeproject.org/files/ENCFF001KZN/@@download/ENCFF001KZN.bigBed mm9 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF001KZO bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KZU 562283235 Bing Ren, UCSD fe3eb84497b6869edfa6afd76b1143c1 https://www.encodeproject.org/files/ENCFF001KZO/@@download/ENCFF001KZO.bam mm9 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF001KZQ bigWig signal ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KZM, ENCFF001KZO 64799708 Bing Ren, UCSD 8dc5b57d1812ce184b10f626ca2df637 https://www.encodeproject.org/files/ENCFF001KZQ/@@download/ENCFF001KZQ.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF001KZU fastq reads ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 533075330 Bing Ren, UCSD 91ff6915d02951ddf8add7deae27f9b0 https://www.encodeproject.org/files/ENCFF001KZU/@@download/ENCFF001KZU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ archived low read length, inconsistent platforms, inconsistent control read length, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF001XZR bed broadPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KZM, ENCFF001KZO 427525 Bing Ren, UCSD 98041ceca71dd15fe0e2ca40ef8ddc67 https://www.encodeproject.org/files/ENCFF001XZR/@@download/ENCFF001XZR.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF887KXU bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KZU, ENCFF806TVZ 468733269 ENCODE Processing Pipeline c32aea52c07659012abfbdb810034365 https://www.encodeproject.org/files/ENCFF887KXU/@@download/ENCFF887KXU.bam mm10-minimal archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF956GPS bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KZR, ENCFF806TVZ 292370437 ENCODE Processing Pipeline 877cd3ee19ded244a46d65c770da1369 https://www.encodeproject.org/files/ENCFF956GPS/@@download/ENCFF956GPS.bam mm10-minimal archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF680QTX bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KZR, ENCFF018NEO 292374831 ENCODE Processing Pipeline 0f31d702617b60c9d509020071abe744 https://www.encodeproject.org/files/ENCFF680QTX/@@download/ENCFF680QTX.bam mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF144DZY bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KZU, ENCFF018NEO 468717950 ENCODE Processing Pipeline 2b4c5c68f49bd2c818b6a40cd2fb4d6d https://www.encodeproject.org/files/ENCFF144DZY/@@download/ENCFF144DZY.bam mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF650EBB bed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF144DZY, ENCFF288ZGZ, ENCFF379WSY 1311791 ENCODE Processing Pipeline 02cdc19dd7a6139e654621f717b5a107 https://www.encodeproject.org/files/ENCFF650EBB/@@download/ENCFF650EBB.bed.gz mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF340UQT bigBed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF650EBB 4028898 ENCODE Processing Pipeline 7ccf34e23959fac2f7b613dfd11f4cdb https://www.encodeproject.org/files/ENCFF340UQT/@@download/ENCFF340UQT.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF449HBK bigBed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF858ZZY 4460897 ENCODE Processing Pipeline e313786ecd983ba9609435b10b3abc46 https://www.encodeproject.org/files/ENCFF449HBK/@@download/ENCFF449HBK.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF962NSM bigBed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF439GJE 3863212 ENCODE Processing Pipeline bc49c845ed02dd43341f095272f676d3 https://www.encodeproject.org/files/ENCFF962NSM/@@download/ENCFF962NSM.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF019MWJ bigWig fold change over control ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF144DZY, ENCFF288ZGZ, ENCFF379WSY, ENCFF680QTX 393824000 ENCODE Processing Pipeline c664c85af48ae841ef62589d746c549e https://www.encodeproject.org/files/ENCFF019MWJ/@@download/ENCFF019MWJ.bigWig mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF439GJE bed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288ZGZ, ENCFF379WSY, ENCFF680QTX 1237628 ENCODE Processing Pipeline 96a0fcb654b2ae403edca807a024c33a https://www.encodeproject.org/files/ENCFF439GJE/@@download/ENCFF439GJE.bed.gz mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF920LNQ bigWig signal p-value ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF144DZY, ENCFF288ZGZ, ENCFF379WSY, ENCFF680QTX 372356907 ENCODE Processing Pipeline b2d8c29b12ea91663634b4856a267f9b https://www.encodeproject.org/files/ENCFF920LNQ/@@download/ENCFF920LNQ.bigWig mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF359NOZ bigWig fold change over control ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288ZGZ, ENCFF379WSY, ENCFF680QTX 202361472 ENCODE Processing Pipeline c2d80557014f6108236e2076eebeadc8 https://www.encodeproject.org/files/ENCFF359NOZ/@@download/ENCFF359NOZ.bigWig mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF858ZZY bed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF144DZY, ENCFF288ZGZ, ENCFF379WSY, ENCFF680QTX 1480043 ENCODE Processing Pipeline 0c3ff45f9108f22a3cbd8b44cacd8203 https://www.encodeproject.org/files/ENCFF858ZZY/@@download/ENCFF858ZZY.bed.gz mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF780BHP bigBed narrowPeak replicated peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF235XUL 2922336 ENCODE Processing Pipeline f476836b38fdfbb998fc80b7ad87f273 https://www.encodeproject.org/files/ENCFF780BHP/@@download/ENCFF780BHP.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF235XUL bed narrowPeak replicated peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF439GJE, ENCFF650EBB, ENCFF858ZZY 1296771 ENCODE Processing Pipeline 13326fb8d99c53ac7f26cd1b787850d0 https://www.encodeproject.org/files/ENCFF235XUL/@@download/ENCFF235XUL.bed.gz mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF371FQY bigWig signal p-value ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288ZGZ, ENCFF379WSY, ENCFF680QTX 320706216 ENCODE Processing Pipeline 719b7abbb67c9b5817d41b4f07d7701f https://www.encodeproject.org/files/ENCFF371FQY/@@download/ENCFF371FQY.bigWig mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF221GJL bigWig signal p-value ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF144DZY, ENCFF288ZGZ, ENCFF379WSY 349039085 ENCODE Processing Pipeline 57a9386d9ba88355e5a484b99cb2e959 https://www.encodeproject.org/files/ENCFF221GJL/@@download/ENCFF221GJL.bigWig mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF748DFB bigWig fold change over control ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF144DZY, ENCFF288ZGZ, ENCFF379WSY 284458325 ENCODE Processing Pipeline 000d31308707ceb524ed1662b11d5123 https://www.encodeproject.org/files/ENCFF748DFB/@@download/ENCFF748DFB.bigWig mm10 archived low read length, inconsistent platforms, low read depth mismatched status, missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF879RLT bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KZR, ENCFF018NEO 260582515 ENCODE Processing Pipeline 03f597007989d475fc5d217250f0b045 https://www.encodeproject.org/files/ENCFF879RLT/@@download/ENCFF879RLT.bam mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF438RJK bam unfiltered alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KZU, ENCFF018NEO 551038644 ENCODE Processing Pipeline 4877aacb6227495df316b63cf7fd601f https://www.encodeproject.org/files/ENCFF438RJK/@@download/ENCFF438RJK.bam mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF425XXS bam alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KZU, ENCFF018NEO 417660836 ENCODE Processing Pipeline 7d6a5adb9d8d8a135e3275dee458895b https://www.encodeproject.org/files/ENCFF425XXS/@@download/ENCFF425XXS.bam mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF901MVV bam unfiltered alignments ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KZR, ENCFF018NEO 342210052 ENCODE Processing Pipeline 3f51f7930be8ceddc05c2e0cb843f9f2 https://www.encodeproject.org/files/ENCFF901MVV/@@download/ENCFF901MVV.bam mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF676DCZ bigBed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF873PHZ 4406769 ENCODE Processing Pipeline ebc7990c3dc473672122749b154ea26e https://www.encodeproject.org/files/ENCFF676DCZ/@@download/ENCFF676DCZ.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF769NKS bigWig signal p-value ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF425XXS 348835084 ENCODE Processing Pipeline ccbb339883007ce96e5df65a87f88a41 https://www.encodeproject.org/files/ENCFF769NKS/@@download/ENCFF769NKS.bigWig mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF420AOP bigWig signal p-value ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF425XXS, ENCFF879RLT 392863136 ENCODE Processing Pipeline a9f3b5d642014d9362e9d250372ace05 https://www.encodeproject.org/files/ENCFF420AOP/@@download/ENCFF420AOP.bigWig mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF873PHZ bed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF425XXS, ENCFF879RLT 1462688 ENCODE Processing Pipeline d963f73c2199c59295ceae59c8072f99 https://www.encodeproject.org/files/ENCFF873PHZ/@@download/ENCFF873PHZ.bed.gz mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF853DYS bigBed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF717LHO 3868145 ENCODE Processing Pipeline 3ebf03879bd491f38e2817aaddc88ecd https://www.encodeproject.org/files/ENCFF853DYS/@@download/ENCFF853DYS.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF892CFF bigWig fold change over control ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF425XXS, ENCFF879RLT 390005513 ENCODE Processing Pipeline 527c8229bd13bb68ad0e6839db2322af https://www.encodeproject.org/files/ENCFF892CFF/@@download/ENCFF892CFF.bigWig mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF878KLX bed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF879RLT 1213652 ENCODE Processing Pipeline 896733081108ce8442a4800c601a0c7b https://www.encodeproject.org/files/ENCFF878KLX/@@download/ENCFF878KLX.bed.gz mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF695YYE bigWig signal p-value ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF879RLT 353235215 ENCODE Processing Pipeline faf35d319c81a0d31b3efc0f1123ca64 https://www.encodeproject.org/files/ENCFF695YYE/@@download/ENCFF695YYE.bigWig mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF150ZSS bigWig fold change over control ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF425XXS 278132676 ENCODE Processing Pipeline b041eea6742887782cb5beb5001081b1 https://www.encodeproject.org/files/ENCFF150ZSS/@@download/ENCFF150ZSS.bigWig mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF998FUV bed narrowPeak replicated peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF717LHO, ENCFF873PHZ, ENCFF878KLX 1272644 ENCODE Processing Pipeline b226c53d0f3ccb886db54d5d805b9af9 https://www.encodeproject.org/files/ENCFF998FUV/@@download/ENCFF998FUV.bed.gz mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF717LHO bed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF425XXS 1257795 ENCODE Processing Pipeline e2c2403da057fddf1528e9b47c6b52e5 https://www.encodeproject.org/files/ENCFF717LHO/@@download/ENCFF717LHO.bed.gz mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF929URV bigBed narrowPeak peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF878KLX 3787282 ENCODE Processing Pipeline 5228b82521aee9f054c0a91215b0748b https://www.encodeproject.org/files/ENCFF929URV/@@download/ENCFF929URV.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF179CGI bigWig fold change over control ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF879RLT 199188914 ENCODE Processing Pipeline 2f8bd3496579a68fd00c4399e4dc6d7e https://www.encodeproject.org/files/ENCFF179CGI/@@download/ENCFF179CGI.bigWig mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF175SUJ bigBed narrowPeak replicated peaks ENCSR000CCY ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF998FUV 2870889 ENCODE Processing Pipeline e21194a0a7bd50eafadf48e59d795cdb https://www.encodeproject.org/files/ENCFF175SUJ/@@download/ENCFF175SUJ.bigBed mm10 archived low read length, inconsistent platforms, low read depth missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF001IAX bigBed narrowPeak peaks ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUQ 94030 Barbara Wold, Caltech 96029aef6136655ce3c0d36a0e78b905 https://www.encodeproject.org/files/ENCFF001IAX/@@download/ENCFF001IAX.bigBed mm9 released insufficient read depth, control insufficient read depth ENCFF001IAY bam alignments ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IBZ 2118699282 Barbara Wold, Caltech a02b1919cf7de939dc43b8bc7cd8055e https://www.encodeproject.org/files/ENCFF001IAY/@@download/ENCFF001IAY.bam mm9 released insufficient read depth, control insufficient read depth ENCFF001IAZ bigWig signal ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAY 249579881 Barbara Wold, Caltech 11c5b6c127324e9f55ffca28ad928d3a https://www.encodeproject.org/files/ENCFF001IAZ/@@download/ENCFF001IAZ.bigWig mm9 released insufficient read depth, control insufficient read depth ENCFF001IBZ fastq reads ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 2100912881 Barbara Wold, Caltech 437edf4eb5f4345582d38cf232d948be https://www.encodeproject.org/files/ENCFF001IBZ/@@download/ENCFF001IBZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released insufficient read depth, control insufficient read depth ENCFF001XUQ bed narrowPeak peaks ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAY 15969 Barbara Wold, Caltech 99728a16a1fb4946ca8566986b6bc288 https://www.encodeproject.org/files/ENCFF001XUQ/@@download/ENCFF001XUQ.bed.gz mm9 released insufficient read depth, control insufficient read depth ENCFF620ERW bam unfiltered alignments ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBZ, ENCFF018NEO 2226371720 ENCODE Processing Pipeline 6c2d7f766ab440886859a52bd9f5c69e https://www.encodeproject.org/files/ENCFF620ERW/@@download/ENCFF620ERW.bam mm10 released insufficient read depth, control insufficient read depth ENCFF132HIM bam alignments ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBZ, ENCFF018NEO 1592086725 ENCODE Processing Pipeline af32a687892fd7d902e796e0555610b3 https://www.encodeproject.org/files/ENCFF132HIM/@@download/ENCFF132HIM.bam mm10 released insufficient read depth, control insufficient read depth ENCFF437DRM bigBed narrowPeak peaks ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF154FPX 2725761 ENCODE Processing Pipeline 3faf79fd108a03e5f83151e218c17212 https://www.encodeproject.org/files/ENCFF437DRM/@@download/ENCFF437DRM.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF329OGH bigWig signal p-value ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF132HIM, ENCFF875IDP 231964722 ENCODE Processing Pipeline b37e48575e4cb61f3dd190c0e9438bb1 https://www.encodeproject.org/files/ENCFF329OGH/@@download/ENCFF329OGH.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF154FPX bed narrowPeak peaks ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF132HIM, ENCFF875IDP 1402341 ENCODE Processing Pipeline 7ccb5ede724316084331552bc587615e https://www.encodeproject.org/files/ENCFF154FPX/@@download/ENCFF154FPX.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF517JPC bigWig fold change over control ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF132HIM, ENCFF875IDP 392737266 ENCODE Processing Pipeline 52feadae6ff291b241f3dc64e7f8aa21 https://www.encodeproject.org/files/ENCFF517JPC/@@download/ENCFF517JPC.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF877YEK bed narrowPeak stable peaks ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF154FPX 969321 ENCODE Processing Pipeline 934bd219a4140eff72d23d48e1b58703 https://www.encodeproject.org/files/ENCFF877YEK/@@download/ENCFF877YEK.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF957YNM bigBed narrowPeak stable peaks ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF877YEK 1820856 ENCODE Processing Pipeline 39d72d4f31de8ad9161c7b1e7bef93e5 https://www.encodeproject.org/files/ENCFF957YNM/@@download/ENCFF957YNM.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF001ZUZ fastq reads ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 822738783 Bing Ren, UCSD 5f7535d095e052a6f2fda848df9607d9 SRA:SRR3653312 https://www.encodeproject.org/files/ENCFF001ZUZ/@@download/ENCFF001ZUZ.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF001ZVA fastq reads ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 582241592 Bing Ren, UCSD 14d62956b87ce710e9e1b08730ec05a3 SRA:SRR3653311 https://www.encodeproject.org/files/ENCFF001ZVA/@@download/ENCFF001ZVA.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF120JKA bam unfiltered alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZVA, ENCFF806TVZ 763603449 ENCODE Processing Pipeline b15da1252d39a6b31bea6e010dfaacbd https://www.encodeproject.org/files/ENCFF120JKA/@@download/ENCFF120JKA.bam mm10-minimal archived low read length, low read depth ENCFF248KDL bam unfiltered alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUZ, ENCFF806TVZ 1077328564 ENCODE Processing Pipeline 43ec34571dd417e3766dd34b065ba44a https://www.encodeproject.org/files/ENCFF248KDL/@@download/ENCFF248KDL.bam mm10-minimal archived low read length, low read depth ENCFF976TWF bam alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUZ, ENCFF806TVZ 682476241 ENCODE Processing Pipeline 3368162ed2a61591c8cf7be6cf2fa52a https://www.encodeproject.org/files/ENCFF976TWF/@@download/ENCFF976TWF.bam mm10-minimal archived low read length, low read depth ENCFF223QEB bam alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZVA, ENCFF806TVZ 474513933 ENCODE Processing Pipeline 32cdca1009dd6eeb20ee7b84c94361f2 https://www.encodeproject.org/files/ENCFF223QEB/@@download/ENCFF223QEB.bam mm10-minimal archived low read length, low read depth ENCFF903TSE bam alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUZ, ENCFF018NEO 682250924 ENCODE Processing Pipeline 38278a6409ec72ea29be3d635faa2c59 https://www.encodeproject.org/files/ENCFF903TSE/@@download/ENCFF903TSE.bam mm10 released low read length, low read depth ENCFF116BMN bam unfiltered alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUZ, ENCFF018NEO 1078862162 ENCODE Processing Pipeline 72eae212b4e0d723afe0991747a07066 https://www.encodeproject.org/files/ENCFF116BMN/@@download/ENCFF116BMN.bam mm10 released low read length, low read depth ENCFF563TGK bam alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZVA, ENCFF018NEO 474349835 ENCODE Processing Pipeline 2f01ae3847824ac1c25cf048aa03f34e https://www.encodeproject.org/files/ENCFF563TGK/@@download/ENCFF563TGK.bam mm10 released low read length, low read depth ENCFF483NBZ bam unfiltered alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZVA, ENCFF018NEO 764724952 ENCODE Processing Pipeline a63665fad3d12d12efb992998ffc60ec https://www.encodeproject.org/files/ENCFF483NBZ/@@download/ENCFF483NBZ.bam mm10 released low read length, low read depth ENCFF001MZL bigBed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHI 833029 Michael Snyder, Stanford acde6cce864656011b4d5eb52ca6bf5f https://www.encodeproject.org/files/ENCFF001MZL/@@download/ENCFF001MZL.bigBed mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001MZM fastq reads ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 746728941 Michael Snyder, Stanford af0ecb4745f99a83096d011780b23e15 SRA:SRR5210725 https://www.encodeproject.org/files/ENCFF001MZM/@@download/ENCFF001MZM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTS/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001MZO fastq reads ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 976887260 Michael Snyder, Stanford 75eb58837cf77de75d691677d89bb055 SRA:SRR5210724 https://www.encodeproject.org/files/ENCFF001MZO/@@download/ENCFF001MZO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTU/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001MZQ bam alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001MZM 407750181 Michael Snyder, Stanford 87b54e2773d9e57f9be6d5aae8ec32ad https://www.encodeproject.org/files/ENCFF001MZQ/@@download/ENCFF001MZQ.bam mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001MZR bigWig signal ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MZQ, ENCFF001MZS 198292062 Michael Snyder, Stanford 93e95c813bed77cc6ebfe18666a8f7af https://www.encodeproject.org/files/ENCFF001MZR/@@download/ENCFF001MZR.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001MZS bam alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001MZO 492194985 Michael Snyder, Stanford a8450e4caf2a059620c33fe226fa228a https://www.encodeproject.org/files/ENCFF001MZS/@@download/ENCFF001MZS.bam mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001YHI bed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MZQ, ENCFF001MZS 380771 Michael Snyder, Stanford 9420383635c545cdb109724d77ffaef6 https://www.encodeproject.org/files/ENCFF001YHI/@@download/ENCFF001YHI.bed.gz mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF897HZE bam unfiltered alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MZO, ENCFF018NEO 1002513811 ENCODE Processing Pipeline 48d3616f871aa31d6dcff881508ea974 https://www.encodeproject.org/files/ENCFF897HZE/@@download/ENCFF897HZE.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF120EMA bam alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MZM, ENCFF018NEO 569446969 ENCODE Processing Pipeline 698e043f63267df643a2911ea09e9af2 https://www.encodeproject.org/files/ENCFF120EMA/@@download/ENCFF120EMA.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF586NHM bam unfiltered alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MZM, ENCFF018NEO 792311640 ENCODE Processing Pipeline 35af2d77d632d96877ab20150fdb8d3c https://www.encodeproject.org/files/ENCFF586NHM/@@download/ENCFF586NHM.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF346NBG bam alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MZO, ENCFF018NEO 668483774 ENCODE Processing Pipeline bf81ee56d77e1f4b7c75db5f7a097ecd https://www.encodeproject.org/files/ENCFF346NBG/@@download/ENCFF346NBG.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF902XKU bed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF120EMA, ENCFF277LUN, ENCFF346NBG, ENCFF479KKI 925704 ENCODE Processing Pipeline c9ac26a1bb0bc5ea00568305021e8db4 https://www.encodeproject.org/files/ENCFF902XKU/@@download/ENCFF902XKU.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF932NKD bigBed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF122DBZ 2583040 ENCODE Processing Pipeline 45d8287fd0220c9bc395c6c1ac2dc7ff https://www.encodeproject.org/files/ENCFF932NKD/@@download/ENCFF932NKD.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF762WYO bed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF120EMA, ENCFF277LUN, ENCFF479KKI 920853 ENCODE Processing Pipeline c61a839a6b81dc4ffaa2524e237b7a0c https://www.encodeproject.org/files/ENCFF762WYO/@@download/ENCFF762WYO.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF464LQM bigBed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF902XKU 2579383 ENCODE Processing Pipeline 1ab592459599284d6baa8823c04963c6 https://www.encodeproject.org/files/ENCFF464LQM/@@download/ENCFF464LQM.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF466SJW bigBed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF762WYO 2623442 ENCODE Processing Pipeline 92129119562d3523a683bd01ba21916a https://www.encodeproject.org/files/ENCFF466SJW/@@download/ENCFF466SJW.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF122DBZ bed narrowPeak peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF346NBG, ENCFF479KKI 904730 ENCODE Processing Pipeline 24c804fe92e2db9f2e91fd72cd15873b https://www.encodeproject.org/files/ENCFF122DBZ/@@download/ENCFF122DBZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF458UHX bigWig signal p-value ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF120EMA, ENCFF277LUN, ENCFF479KKI 376034383 ENCODE Processing Pipeline 047381afd988b7364af787c13d7cff0a https://www.encodeproject.org/files/ENCFF458UHX/@@download/ENCFF458UHX.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF894STA bigWig signal p-value ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF346NBG, ENCFF479KKI 339650032 ENCODE Processing Pipeline 788bdd162d54dfe8ac3496b60111f34d https://www.encodeproject.org/files/ENCFF894STA/@@download/ENCFF894STA.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF383NKL bigWig signal p-value ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF120EMA, ENCFF277LUN, ENCFF346NBG, ENCFF479KKI 510074579 ENCODE Processing Pipeline d87655d0891f9c85079ba413c17c6565 https://www.encodeproject.org/files/ENCFF383NKL/@@download/ENCFF383NKL.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF252HIZ bigWig fold change over control ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF120EMA, ENCFF277LUN, ENCFF479KKI 314360781 ENCODE Processing Pipeline a8d7017234c6f96a3720d346813cfc55 https://www.encodeproject.org/files/ENCFF252HIZ/@@download/ENCFF252HIZ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF460VOP bigWig fold change over control ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF346NBG, ENCFF479KKI 323068519 ENCODE Processing Pipeline c76a26828e8fc981db807c8f839286c8 https://www.encodeproject.org/files/ENCFF460VOP/@@download/ENCFF460VOP.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF206DMH bigWig fold change over control ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF120EMA, ENCFF277LUN, ENCFF346NBG, ENCFF479KKI 513619601 ENCODE Processing Pipeline 851ce2f2e6d1ee452e4d983ff30d9d9d https://www.encodeproject.org/files/ENCFF206DMH/@@download/ENCFF206DMH.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF239DRZ bigBed narrowPeak replicated peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF294ZVX 2195051 ENCODE Processing Pipeline 5602ff25c678e0004d2b9c54c1f33ef1 https://www.encodeproject.org/files/ENCFF239DRZ/@@download/ENCFF239DRZ.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF294ZVX bed narrowPeak replicated peaks ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF122DBZ, ENCFF762WYO, ENCFF902XKU 1059074 ENCODE Processing Pipeline afaa433d672446dec5eeaea6efcff9b1 https://www.encodeproject.org/files/ENCFF294ZVX/@@download/ENCFF294ZVX.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001ZSL fastq reads ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 36 single-ended 1757401779 Bing Ren, UCSD 8cb3689f06487a19148aa389a3ab62b8 SRA:SRR3652183 https://www.encodeproject.org/files/ENCFF001ZSL/@@download/ENCFF001ZSL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVD/ released low read length control insufficient read depth ENCFF001ZSN fastq reads ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 36 single-ended 1851700011 Bing Ren, UCSD 74cc995e2e2bf9dee406e9149e9afa84 SRA:SRR3652182 https://www.encodeproject.org/files/ENCFF001ZSN/@@download/ENCFF001ZSN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUR/ released low read length control insufficient read depth ENCFF258YLK bam alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF001ZSN, ENCFF806TVZ 1001097716 ENCODE Processing Pipeline 2febe4296a6c3c642f2e3264cff8b100 https://www.encodeproject.org/files/ENCFF258YLK/@@download/ENCFF258YLK.bam mm10-minimal archived low read length control insufficient read depth ENCFF090VND bam alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF001ZSL, ENCFF806TVZ 1024502217 ENCODE Processing Pipeline 9765a9d269cafc48b697fea400e38dfe https://www.encodeproject.org/files/ENCFF090VND/@@download/ENCFF090VND.bam mm10-minimal archived low read length control insufficient read depth ENCFF602YGX bed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF066KEA, ENCFF090VND, ENCFF657TOI 628040 ENCODE Processing Pipeline d24b1d8ec69245e4d93c1ef8dc7def79 https://www.encodeproject.org/files/ENCFF602YGX/@@download/ENCFF602YGX.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF047VOP bigBed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF602YGX 1163261 ENCODE Processing Pipeline fffad867ba6a3eba743d84e25c6a6e3f https://www.encodeproject.org/files/ENCFF047VOP/@@download/ENCFF047VOP.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF649AIR bed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF066KEA, ENCFF258YLK, ENCFF657TOI 517523 ENCODE Processing Pipeline 91590d86415d169171e4b02a2872de0f https://www.encodeproject.org/files/ENCFF649AIR/@@download/ENCFF649AIR.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF363ZWF bigBed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF903SFX 539511 ENCODE Processing Pipeline dcf58f06d6f261ca2ca3844c21ec8897 https://www.encodeproject.org/files/ENCFF363ZWF/@@download/ENCFF363ZWF.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF903SFX bed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF066KEA, ENCFF090VND, ENCFF258YLK, ENCFF657TOI 206880 ENCODE Processing Pipeline 23432359dde2ba2be74ecc2ff23bae8a https://www.encodeproject.org/files/ENCFF903SFX/@@download/ENCFF903SFX.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF744UXV bigBed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF649AIR 993977 ENCODE Processing Pipeline f9173a4a1394f24617b673d37c3b884e https://www.encodeproject.org/files/ENCFF744UXV/@@download/ENCFF744UXV.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF058MND bigWig signal p-value ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF066KEA, ENCFF258YLK, ENCFF657TOI 354725849 ENCODE Processing Pipeline 2bf331b35ebb17a44690a98dc2e8d06e https://www.encodeproject.org/files/ENCFF058MND/@@download/ENCFF058MND.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF667JTR bigWig signal p-value ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF066KEA, ENCFF090VND, ENCFF657TOI 370997635 ENCODE Processing Pipeline 91061fdf2d525f33ccda7983a342157f https://www.encodeproject.org/files/ENCFF667JTR/@@download/ENCFF667JTR.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF435CRV bigWig signal p-value ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF066KEA, ENCFF090VND, ENCFF258YLK, ENCFF657TOI 503888210 ENCODE Processing Pipeline 6cd9829f6246293976987b0168edfd18 https://www.encodeproject.org/files/ENCFF435CRV/@@download/ENCFF435CRV.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF496SLF bigWig fold change over control ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF066KEA, ENCFF258YLK, ENCFF657TOI 441511590 ENCODE Processing Pipeline 43cf83264d911089e287695ccb438a6d https://www.encodeproject.org/files/ENCFF496SLF/@@download/ENCFF496SLF.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF359SUM bigWig fold change over control ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF066KEA, ENCFF090VND, ENCFF657TOI 439294773 ENCODE Processing Pipeline 214bb5786173b6b513d88b20078bd73f https://www.encodeproject.org/files/ENCFF359SUM/@@download/ENCFF359SUM.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF107VQE bigWig fold change over control ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF066KEA, ENCFF090VND, ENCFF258YLK, ENCFF657TOI 700019146 ENCODE Processing Pipeline 5d58f66370b4db6a49c50dff0996ce88 https://www.encodeproject.org/files/ENCFF107VQE/@@download/ENCFF107VQE.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF628SRH bigBed narrowPeak replicated peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF209GHY 401887 ENCODE Processing Pipeline e48c94028980bb068213be27b24b5464 https://www.encodeproject.org/files/ENCFF628SRH/@@download/ENCFF628SRH.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF209GHY bed narrowPeak replicated peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF602YGX, ENCFF649AIR, ENCFF903SFX 154738 ENCODE Processing Pipeline 5af77495b388b9533781d397df2313e9 https://www.encodeproject.org/files/ENCFF209GHY/@@download/ENCFF209GHY.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF660RIB bam unfiltered alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF001ZSN, ENCFF018NEO 2349272445 ENCODE Processing Pipeline f09b79c965f96f778473a87e7af57436 https://www.encodeproject.org/files/ENCFF660RIB/@@download/ENCFF660RIB.bam mm10 released low read length control insufficient read depth ENCFF190RET bam unfiltered alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF001ZSL, ENCFF018NEO 2242049589 ENCODE Processing Pipeline faeef121965c8ba7fcec9bfaf95f08be https://www.encodeproject.org/files/ENCFF190RET/@@download/ENCFF190RET.bam mm10 released low read length control insufficient read depth ENCFF077YVV bam alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF001ZSN, ENCFF018NEO 1000412557 ENCODE Processing Pipeline a1dc036311b0174cf60b889a4670f947 https://www.encodeproject.org/files/ENCFF077YVV/@@download/ENCFF077YVV.bam mm10 released low read length control insufficient read depth ENCFF314IHA bam alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF001ZSL, ENCFF018NEO 1023771838 ENCODE Processing Pipeline 150b27abc8665ef0011719cde62dc235 https://www.encodeproject.org/files/ENCFF314IHA/@@download/ENCFF314IHA.bam mm10 released low read length control insufficient read depth ENCFF391FYV bed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF077YVV, ENCFF130PCO, ENCFF735XMC 524228 ENCODE Processing Pipeline 6e9a66431a5d042c18e6dbfc7a9add22 https://www.encodeproject.org/files/ENCFF391FYV/@@download/ENCFF391FYV.bed.gz mm10 released low read length control insufficient read depth ENCFF382ZOT bed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF130PCO, ENCFF314IHA, ENCFF735XMC 633314 ENCODE Processing Pipeline 5d225cd7b352476a8452ee28094640ae https://www.encodeproject.org/files/ENCFF382ZOT/@@download/ENCFF382ZOT.bed.gz mm10 released low read length control insufficient read depth ENCFF179KJD bed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF077YVV, ENCFF130PCO, ENCFF314IHA, ENCFF735XMC 222864 ENCODE Processing Pipeline 4a45e20ef354364911de9605024f9484 https://www.encodeproject.org/files/ENCFF179KJD/@@download/ENCFF179KJD.bed.gz mm10 released low read length control insufficient read depth ENCFF963DIZ bigBed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF391FYV 1007863 ENCODE Processing Pipeline 0d53e6538d09d2aa6b42235ea955964b https://www.encodeproject.org/files/ENCFF963DIZ/@@download/ENCFF963DIZ.bigBed mm10 released low read length control insufficient read depth ENCFF870RHO bigBed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF382ZOT 1186848 ENCODE Processing Pipeline 27b65ed3d2b97796f070ae3f17bec806 https://www.encodeproject.org/files/ENCFF870RHO/@@download/ENCFF870RHO.bigBed mm10 released low read length control insufficient read depth ENCFF217BGQ bigBed narrowPeak peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF179KJD 575590 ENCODE Processing Pipeline eaf874e5dd6ad4aa8eb5afaea4a748d9 https://www.encodeproject.org/files/ENCFF217BGQ/@@download/ENCFF217BGQ.bigBed mm10 released low read length control insufficient read depth ENCFF011YZC bigWig signal p-value ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF077YVV, ENCFF130PCO, ENCFF735XMC 434665462 ENCODE Processing Pipeline 9d47fcbf3256441b041a4a9791e4096d https://www.encodeproject.org/files/ENCFF011YZC/@@download/ENCFF011YZC.bigWig mm10 released low read length control insufficient read depth ENCFF772ZMM bigWig signal p-value ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF130PCO, ENCFF314IHA, ENCFF735XMC 454602388 ENCODE Processing Pipeline 7abfd18b70999d33143aa3a843b61b4b https://www.encodeproject.org/files/ENCFF772ZMM/@@download/ENCFF772ZMM.bigWig mm10 released low read length control insufficient read depth ENCFF928FNB bigWig signal p-value ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF077YVV, ENCFF130PCO, ENCFF314IHA, ENCFF735XMC 515951301 ENCODE Processing Pipeline cbe730b43581358db4e05f29a53e28fa https://www.encodeproject.org/files/ENCFF928FNB/@@download/ENCFF928FNB.bigWig mm10 released low read length control insufficient read depth ENCFF980RQU bigWig fold change over control ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF077YVV, ENCFF130PCO, ENCFF735XMC 440906491 ENCODE Processing Pipeline 3d129263679cb0146b9e761600f0a101 https://www.encodeproject.org/files/ENCFF980RQU/@@download/ENCFF980RQU.bigWig mm10 released low read length control insufficient read depth ENCFF282ZQO bigWig fold change over control ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF130PCO, ENCFF314IHA, ENCFF735XMC 442182535 ENCODE Processing Pipeline 3de75a49465904be4cb4c0f9dfa8cedb https://www.encodeproject.org/files/ENCFF282ZQO/@@download/ENCFF282ZQO.bigWig mm10 released low read length control insufficient read depth ENCFF973ZKZ bigWig fold change over control ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF077YVV, ENCFF130PCO, ENCFF314IHA, ENCFF735XMC 712918163 ENCODE Processing Pipeline 17e70391c5cb2196b66ece37674d3f7d https://www.encodeproject.org/files/ENCFF973ZKZ/@@download/ENCFF973ZKZ.bigWig mm10 released low read length control insufficient read depth ENCFF736PWD bed narrowPeak replicated peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF179KJD, ENCFF382ZOT, ENCFF391FYV 140724 ENCODE Processing Pipeline ed0e3451b715ac9e5eccc2e165adfad5 https://www.encodeproject.org/files/ENCFF736PWD/@@download/ENCFF736PWD.bed.gz mm10 released low read length control insufficient read depth ENCFF223TEW bigBed narrowPeak replicated peaks ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF736PWD 371637 ENCODE Processing Pipeline e32d16fb2a95582d410460ed0c3dd97e https://www.encodeproject.org/files/ENCFF223TEW/@@download/ENCFF223TEW.bigBed mm10 released low read length control insufficient read depth ENCFF001LOR bigBed broadPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAS 827162 Bing Ren, UCSD 125153bdccabc92198f527c53bfce061 https://www.encodeproject.org/files/ENCFF001LOR/@@download/ENCFF001LOR.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001LOS bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPA 1703423943 Bing Ren, UCSD 0f85e2d8bd20ca86df9414e97da5a9de https://www.encodeproject.org/files/ENCFF001LOS/@@download/ENCFF001LOS.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001LOT bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPK 2832777198 Bing Ren, UCSD 667290327ab20013e507ae5d826f2c75 https://www.encodeproject.org/files/ENCFF001LOT/@@download/ENCFF001LOT.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001LOU bigWig signal ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LOS, ENCFF001LOT 47358322 Bing Ren, UCSD bf15bc7f3cb04f867e1c284831dd4f0d https://www.encodeproject.org/files/ENCFF001LOU/@@download/ENCFF001LOU.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001LPA fastq reads ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 1857750780 Bing Ren, UCSD 9f7a9bc43db2b961e81c7af0afc1e11c https://www.encodeproject.org/files/ENCFF001LPA/@@download/ENCFF001LPA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001LPK fastq reads ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 3206007745 Bing Ren, UCSD 253f106c88a5b76658f4546a242089f7 https://www.encodeproject.org/files/ENCFF001LPK/@@download/ENCFF001LPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001YAS bed broadPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LOS, ENCFF001LOT 516803 Bing Ren, UCSD a51aff79e8f840f4ee6854e0f51d412c https://www.encodeproject.org/files/ENCFF001YAS/@@download/ENCFF001YAS.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF958NLD bam unfiltered alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 2851545952 ENCODE Processing Pipeline d569a046506fad0fe0a990c4ddd50b42 https://www.encodeproject.org/files/ENCFF958NLD/@@download/ENCFF958NLD.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF081UJZ bam unfiltered alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 1738352194 ENCODE Processing Pipeline 4da5edd3f6578becece088640e2b8eca https://www.encodeproject.org/files/ENCFF081UJZ/@@download/ENCFF081UJZ.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF790KRK bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 254614431 ENCODE Processing Pipeline e1ec01bb207eb33d693da82e2890c587 https://www.encodeproject.org/files/ENCFF790KRK/@@download/ENCFF790KRK.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF150WRV bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 250266703 ENCODE Processing Pipeline 7dcffb4a6f8c061558dc42a1b97cec12 https://www.encodeproject.org/files/ENCFF150WRV/@@download/ENCFF150WRV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF836MWU bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 138900158 ENCODE Processing Pipeline 53ff8d918a036e9fd31325ba0d0a9af6 https://www.encodeproject.org/files/ENCFF836MWU/@@download/ENCFF836MWU.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF871BPC bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 188701432 ENCODE Processing Pipeline 5f4be9b23af4116e6eaffa52b7d89818 https://www.encodeproject.org/files/ENCFF871BPC/@@download/ENCFF871BPC.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF387HCI bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 82458462 ENCODE Processing Pipeline 7541632443b7e81c0609be178ac5b385 https://www.encodeproject.org/files/ENCFF387HCI/@@download/ENCFF387HCI.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF771PZS bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 179358966 ENCODE Processing Pipeline 76fce67d443ba8361d3890c51c6ab2ac https://www.encodeproject.org/files/ENCFF771PZS/@@download/ENCFF771PZS.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF168IVP bed narrowPeak optimal idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF041ZCF, ENCFF547MET, ENCFF641UWK, ENCFF953YSC 571353 ENCODE Processing Pipeline 857d97eb1970552f17bdab0069091f90 https://www.encodeproject.org/files/ENCFF168IVP/@@download/ENCFF168IVP.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF863SNW bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 87996261 ENCODE Processing Pipeline 92a02ccd88c14b0a2f8d54e2346156bf https://www.encodeproject.org/files/ENCFF863SNW/@@download/ENCFF863SNW.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF953YSC bed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 1901306 ENCODE Processing Pipeline 5f38e5068e9ef3b20da10e25ac9d6183 https://www.encodeproject.org/files/ENCFF953YSC/@@download/ENCFF953YSC.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF029VYE bigBed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF953YSC 4140535 ENCODE Processing Pipeline e7e1a7be264494e7b01d0bedc3c6bbf2 https://www.encodeproject.org/files/ENCFF029VYE/@@download/ENCFF029VYE.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF100ZBW bed narrowPeak conservative idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF041ZCF, ENCFF547MET, ENCFF641UWK, ENCFF953YSC 526137 ENCODE Processing Pipeline a0a618bb7ad785e78943ed014d1f5a01 https://www.encodeproject.org/files/ENCFF100ZBW/@@download/ENCFF100ZBW.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF534YTF bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 256373379 ENCODE Processing Pipeline 1bc33b7e590b1100b76a49ab459717c3 https://www.encodeproject.org/files/ENCFF534YTF/@@download/ENCFF534YTF.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF596OZR bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF168IVP 1089581 ENCODE Processing Pipeline adbb7b95bb838a817f84da8cd631293c https://www.encodeproject.org/files/ENCFF596OZR/@@download/ENCFF596OZR.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF041ZCF bed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 1840948 ENCODE Processing Pipeline cfe7b7876434783be24e9b342efe728e https://www.encodeproject.org/files/ENCFF041ZCF/@@download/ENCFF041ZCF.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF641UWK bed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 4037815 ENCODE Processing Pipeline f11bb2e16ac318765cb8345f33e98e2e https://www.encodeproject.org/files/ENCFF641UWK/@@download/ENCFF641UWK.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF473DLH bigBed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF041ZCF 4064541 ENCODE Processing Pipeline c048f845c482d025a41d48d44664f00a https://www.encodeproject.org/files/ENCFF473DLH/@@download/ENCFF473DLH.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF829ESA bigBed narrowPeak peaks and background as input for IDR ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF641UWK 8148303 ENCODE Processing Pipeline 153795c624fac4c867cd723a0d89900f https://www.encodeproject.org/files/ENCFF829ESA/@@download/ENCFF829ESA.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF594YKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF100ZBW 1019456 ENCODE Processing Pipeline 926a11bf60164542bc92bfc845c246c9 https://www.encodeproject.org/files/ENCFF594YKN/@@download/ENCFF594YKN.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001IGX bigBed narrowPeak peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVF 270001 Barbara Wold, Caltech bbcc80b199f0b27776f5ccf8a1024199 https://www.encodeproject.org/files/ENCFF001IGX/@@download/ENCFF001IGX.bigBed mm9 released control low read depth, low read depth ENCFF001IGY bigWig signal ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGZ 118685426 Barbara Wold, Caltech b22d5bde9d221214d1e6aa2b2b9b8804 https://www.encodeproject.org/files/ENCFF001IGY/@@download/ENCFF001IGY.bigWig mm9 released control low read depth, low read depth ENCFF001IGZ bam alignments ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIF 1099433758 Barbara Wold, Caltech f4258162b9f9f1326d0d58b75a9abd82 https://www.encodeproject.org/files/ENCFF001IGZ/@@download/ENCFF001IGZ.bam mm9 released control low read depth, low read depth ENCFF001IIF fastq reads ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1062591253 Barbara Wold, Caltech 681bb4497c4540d61d1274829f3ace0a https://www.encodeproject.org/files/ENCFF001IIF/@@download/ENCFF001IIF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released control low read depth, low read depth ENCFF001XVF bed narrowPeak peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGZ 114418 Barbara Wold, Caltech 06e3426d102fa27a15fd30294f0ea4cf https://www.encodeproject.org/files/ENCFF001XVF/@@download/ENCFF001XVF.bed.gz mm9 released control low read depth, low read depth ENCFF690GJA bam unfiltered alignments ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIF, ENCFF018NEO 1164084030 ENCODE Processing Pipeline 508878d37a40d46fc661ddd4c336cc89 https://www.encodeproject.org/files/ENCFF690GJA/@@download/ENCFF690GJA.bam mm10 released control low read depth, low read depth ENCFF259LKI bam alignments ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIF, ENCFF018NEO 804177197 ENCODE Processing Pipeline 5907c8dd62c5756b524a1d29e072b453 https://www.encodeproject.org/files/ENCFF259LKI/@@download/ENCFF259LKI.bam mm10 released control low read depth, low read depth ENCFF140UCV bigWig fold change over control ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF259LKI, ENCFF993HAY 258781874 ENCODE Processing Pipeline a136e95d07525cfb0a5feb79e8adea55 https://www.encodeproject.org/files/ENCFF140UCV/@@download/ENCFF140UCV.bigWig mm10 released control low read depth, low read depth ENCFF427XVV bigWig signal p-value ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF259LKI, ENCFF993HAY 236287950 ENCODE Processing Pipeline 53501bdf3f4cd17eb4c6e3b00ee1d5dd https://www.encodeproject.org/files/ENCFF427XVV/@@download/ENCFF427XVV.bigWig mm10 released control low read depth, low read depth ENCFF208EDI bed narrowPeak peaks and background as input for IDR ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF259LKI, ENCFF993HAY 4070002 ENCODE Processing Pipeline e268fafab5800fa053aa2e3f41a7132d https://www.encodeproject.org/files/ENCFF208EDI/@@download/ENCFF208EDI.bed.gz mm10 released control low read depth, low read depth ENCFF441MFA bigBed narrowPeak peaks and background as input for IDR ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF208EDI 10160259 ENCODE Processing Pipeline b135e9fb7c362b87e7cc3d0f5ebd726c https://www.encodeproject.org/files/ENCFF441MFA/@@download/ENCFF441MFA.bigBed mm10 released control low read depth, low read depth ENCFF520QOR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF208EDI, ENCFF547MET 235152 ENCODE Processing Pipeline bc1a0d716ba3a2a58c5658c38d23fd07 https://www.encodeproject.org/files/ENCFF520QOR/@@download/ENCFF520QOR.bed.gz mm10 released control low read depth, low read depth ENCFF485HOT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF520QOR 451130 ENCODE Processing Pipeline 82ef7c9bf10d37166f0e1a82c11e200b https://www.encodeproject.org/files/ENCFF485HOT/@@download/ENCFF485HOT.bigBed mm10 released control low read depth, low read depth ENCFF002BGZ fastq reads ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 1 36 single-ended 2974738916 Bing Ren, UCSD 10d815febe0164201ded1010a1e1fb9d SRA:SRR3651389 https://www.encodeproject.org/files/ENCFF002BGZ/@@download/ENCFF002BGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQO/ released low read length, inconsistent control read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BGN fastq reads ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 1 36 single-ended 410224376 Bing Ren, UCSD eb3d6369531fbe39fee62986e0b8515b SRA:SRR3651387 https://www.encodeproject.org/files/ENCFF002BGN/@@download/ENCFF002BGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQL/ released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002CCC fastq reads ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 2 36 single-ended 943497297 Bing Ren, UCSD 1acba86a6ecf9cfcb2463a63690215f2 SRA:SRR3651388 https://www.encodeproject.org/files/ENCFF002CCC/@@download/ENCFF002CCC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQL/ released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF328UGV bam alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF002BGN, ENCFF002CCC, ENCFF806TVZ 1032941820 ENCODE Processing Pipeline ebbb664264cca787913c4aa280145bdf https://www.encodeproject.org/files/ENCFF328UGV/@@download/ENCFF328UGV.bam mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF346HPR bam alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF002BGZ, ENCFF806TVZ 2090303350 ENCODE Processing Pipeline 6f488bd58c5bbc97539aa52387ffc57d https://www.encodeproject.org/files/ENCFF346HPR/@@download/ENCFF346HPR.bam mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF142XQA bed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF248DBJ, ENCFF346HPR, ENCFF786XLC 409562 ENCODE Processing Pipeline 9ab9c54528d8c24d327ea76ae114c78b https://www.encodeproject.org/files/ENCFF142XQA/@@download/ENCFF142XQA.bed.gz mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF947JVH bed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF248DBJ, ENCFF328UGV, ENCFF786XLC 732157 ENCODE Processing Pipeline 21b5dad89507e582fb0577db70997fee https://www.encodeproject.org/files/ENCFF947JVH/@@download/ENCFF947JVH.bed.gz mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF300KVI bigBed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF142XQA 1004102 ENCODE Processing Pipeline 97dc91a3130b2e336915c80792a97920 https://www.encodeproject.org/files/ENCFF300KVI/@@download/ENCFF300KVI.bigBed mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF255DHN bigBed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF804YOF 884589 ENCODE Processing Pipeline b275dc958cfe4439ad02ce24333adb8f https://www.encodeproject.org/files/ENCFF255DHN/@@download/ENCFF255DHN.bigBed mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF599PMF bigBed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF947JVH 1737448 ENCODE Processing Pipeline 8a4f77617f2598df78148f50cf0ff3d0 https://www.encodeproject.org/files/ENCFF599PMF/@@download/ENCFF599PMF.bigBed mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF804YOF bed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF248DBJ, ENCFF328UGV, ENCFF346HPR, ENCFF786XLC 391986 ENCODE Processing Pipeline dd32f789be11c420af2fcf2a5ee37c12 https://www.encodeproject.org/files/ENCFF804YOF/@@download/ENCFF804YOF.bed.gz mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF941YYR bigWig signal p-value ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF248DBJ, ENCFF346HPR, ENCFF786XLC 624291451 ENCODE Processing Pipeline c1d887f29a114a5b75ea5bdbb5dc959c https://www.encodeproject.org/files/ENCFF941YYR/@@download/ENCFF941YYR.bigWig mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF799FPR bigWig signal p-value ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF248DBJ, ENCFF328UGV, ENCFF786XLC 383423412 ENCODE Processing Pipeline f23a698aa7a3b48c36c14dcbe221578c https://www.encodeproject.org/files/ENCFF799FPR/@@download/ENCFF799FPR.bigWig mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF899AIM bigWig signal p-value ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF248DBJ, ENCFF328UGV, ENCFF346HPR, ENCFF786XLC 603463526 ENCODE Processing Pipeline 2a36f7eb9796f21396710293adde9ae6 https://www.encodeproject.org/files/ENCFF899AIM/@@download/ENCFF899AIM.bigWig mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF279YSC bigWig fold change over control ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF248DBJ, ENCFF346HPR, ENCFF786XLC 738278248 ENCODE Processing Pipeline 939af58644fe190645685343f3351dab https://www.encodeproject.org/files/ENCFF279YSC/@@download/ENCFF279YSC.bigWig mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF265AQO bigWig fold change over control ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF248DBJ, ENCFF328UGV, ENCFF786XLC 453131657 ENCODE Processing Pipeline 4d55548c39aa7e2e9010b4b3608cc4a0 https://www.encodeproject.org/files/ENCFF265AQO/@@download/ENCFF265AQO.bigWig mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF374HUH bigWig fold change over control ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF248DBJ, ENCFF328UGV, ENCFF346HPR, ENCFF786XLC 939449178 ENCODE Processing Pipeline 21f92f0bd2dd965233d2c8cebdc3a39a https://www.encodeproject.org/files/ENCFF374HUH/@@download/ENCFF374HUH.bigWig mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF834CSO bigBed narrowPeak replicated peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF209YYC 656849 ENCODE Processing Pipeline f47899e108e650c78c933536d3002a0d https://www.encodeproject.org/files/ENCFF834CSO/@@download/ENCFF834CSO.bigBed mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF209YYC bed narrowPeak replicated peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF142XQA, ENCFF804YOF, ENCFF947JVH 308661 ENCODE Processing Pipeline 086eb352f1b20182f221127fc809c535 https://www.encodeproject.org/files/ENCFF209YYC/@@download/ENCFF209YYC.bed.gz mm10-minimal archived low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF436LGW bam unfiltered alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 36 ENCFF002BGN, ENCFF002CCC, ENCFF018NEO 1567559355 ENCODE Processing Pipeline 3ff1505e5c52e8db35658866a646abb4 https://www.encodeproject.org/files/ENCFF436LGW/@@download/ENCFF436LGW.bam mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF379OXU bam unfiltered alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 36 ENCFF002BGZ, ENCFF018NEO 3190751474 ENCODE Processing Pipeline 285e074c17841ad9d92a993c7eda6a41 https://www.encodeproject.org/files/ENCFF379OXU/@@download/ENCFF379OXU.bam mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF586WVO bam alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 36 ENCFF002BGN, ENCFF002CCC, ENCFF018NEO 1032712262 ENCODE Processing Pipeline 05a4d7f9afbe850b014664b01f45ff07 https://www.encodeproject.org/files/ENCFF586WVO/@@download/ENCFF586WVO.bam mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF386JWC bam alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 36 ENCFF002BGZ, ENCFF018NEO 2089822634 ENCODE Processing Pipeline 9666762de7e845f857a44475b5dc3b3c https://www.encodeproject.org/files/ENCFF386JWC/@@download/ENCFF386JWC.bam mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF166UCH bed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF386JWC, ENCFF424QZD, ENCFF767URV 485791 ENCODE Processing Pipeline 642df3e0056bf32260ede173dbb20f7d https://www.encodeproject.org/files/ENCFF166UCH/@@download/ENCFF166UCH.bed.gz mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF174IWG bed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF586WVO, ENCFF767URV 337560 ENCODE Processing Pipeline b5d56a03f1c17f08983ef41e380898fd https://www.encodeproject.org/files/ENCFF174IWG/@@download/ENCFF174IWG.bed.gz mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF107FFK bed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF386JWC, ENCFF424QZD, ENCFF586WVO, ENCFF767URV 340260 ENCODE Processing Pipeline 0461232a95e8b4ac73d1bdf174c053a8 https://www.encodeproject.org/files/ENCFF107FFK/@@download/ENCFF107FFK.bed.gz mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF148UTA bigBed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF166UCH 1190187 ENCODE Processing Pipeline ed47a61cc22ca312aa70b0b6883ef3cf https://www.encodeproject.org/files/ENCFF148UTA/@@download/ENCFF148UTA.bigBed mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF453ELG bigBed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF174IWG 812737 ENCODE Processing Pipeline a3b223e189637dd2dec078865e6d3020 https://www.encodeproject.org/files/ENCFF453ELG/@@download/ENCFF453ELG.bigBed mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF234VAH bigBed narrowPeak peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF107FFK 964420 ENCODE Processing Pipeline 53a0a49d949fd793edda187691d70f58 https://www.encodeproject.org/files/ENCFF234VAH/@@download/ENCFF234VAH.bigBed mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF495ORC bigWig signal p-value ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF386JWC, ENCFF424QZD, ENCFF767URV 615806674 ENCODE Processing Pipeline 51fd29c38281574aa51a1bfdd266ea92 https://www.encodeproject.org/files/ENCFF495ORC/@@download/ENCFF495ORC.bigWig mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF226JWU bigWig signal p-value ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF586WVO, ENCFF767URV 354371749 ENCODE Processing Pipeline 6e8ac7eadfd859fe1f056cb58671e4ca https://www.encodeproject.org/files/ENCFF226JWU/@@download/ENCFF226JWU.bigWig mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF516OOT bigWig signal p-value ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF386JWC, ENCFF424QZD, ENCFF586WVO, ENCFF767URV 622800839 ENCODE Processing Pipeline 3e4ab622169961111b85e6c849ce6e31 https://www.encodeproject.org/files/ENCFF516OOT/@@download/ENCFF516OOT.bigWig mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF164BIV bigWig fold change over control ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 ENCFF386JWC, ENCFF424QZD, ENCFF767URV 744730624 ENCODE Processing Pipeline 1159760a26577c3915f9e1e0c28c7fd1 https://www.encodeproject.org/files/ENCFF164BIV/@@download/ENCFF164BIV.bigWig mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF165CHS bigWig fold change over control ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 ENCFF586WVO, ENCFF767URV 379563729 ENCODE Processing Pipeline 122803e439b8ad44db6b9d9142e90902 https://www.encodeproject.org/files/ENCFF165CHS/@@download/ENCFF165CHS.bigWig mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF223PHS bigWig fold change over control ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF386JWC, ENCFF424QZD, ENCFF586WVO, ENCFF767URV 992215262 ENCODE Processing Pipeline a4d21a4587186574f746132d04e58a64 https://www.encodeproject.org/files/ENCFF223PHS/@@download/ENCFF223PHS.bigWig mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF634XCB bed narrowPeak replicated peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF107FFK, ENCFF166UCH, ENCFF174IWG 274027 ENCODE Processing Pipeline 6e1610183eceb4f152824aa58bd8d194 https://www.encodeproject.org/files/ENCFF634XCB/@@download/ENCFF634XCB.bed.gz mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF170ZOT bigBed narrowPeak replicated peaks ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1, 2 ENCFF634XCB 726598 ENCODE Processing Pipeline c4a449e4283f5326479f429bae4423bc https://www.encodeproject.org/files/ENCFF170ZOT/@@download/ENCFF170ZOT.bigBed mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVN fastq reads ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 36 single-ended 1006393663 Bing Ren, UCSD e8f921dc387bd17d2d1c517d6aafc2a4 SRA:SRR3652172 https://www.encodeproject.org/files/ENCFF002BVN/@@download/ENCFF002BVN.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVW fastq reads ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 1722679874 Bing Ren, UCSD 6446f43f88e3da473df5b66405c633e3 SRA:SRR3652174 https://www.encodeproject.org/files/ENCFF002BVW/@@download/ENCFF002BVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUY/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVS fastq reads ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 1557121029 Bing Ren, UCSD 30f11ef0e31b92a488844202d7224b44 SRA:SRR3652173 https://www.encodeproject.org/files/ENCFF002BVS/@@download/ENCFF002BVS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVC/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF197PZK bam alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002BVW, ENCFF806TVZ 1006589264 ENCODE Processing Pipeline d9d11c73f446904a78b0abbe506bed7d https://www.encodeproject.org/files/ENCFF197PZK/@@download/ENCFF197PZK.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF453BKE bam alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002BVN, ENCFF002BVS, ENCFF806TVZ 1355694290 ENCODE Processing Pipeline da00c758e7ff6ef6eaefaaba9e5d5b7b https://www.encodeproject.org/files/ENCFF453BKE/@@download/ENCFF453BKE.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF895YFA bed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF453BKE 777017 ENCODE Processing Pipeline b2d8a16d7f52d44a053c9ca936480268 https://www.encodeproject.org/files/ENCFF895YFA/@@download/ENCFF895YFA.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF343EEN bigBed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF334KZK 1053795 ENCODE Processing Pipeline b4463f2e8d9ae9987b5cc5ac5325c50f https://www.encodeproject.org/files/ENCFF343EEN/@@download/ENCFF343EEN.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF863PJZ bed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF197PZK, ENCFF224PDN, ENCFF366UML 748962 ENCODE Processing Pipeline 3413eef4e19c4dbff829aaac87c6f84f https://www.encodeproject.org/files/ENCFF863PJZ/@@download/ENCFF863PJZ.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF334KZK bed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF197PZK, ENCFF224PDN, ENCFF366UML, ENCFF453BKE 434285 ENCODE Processing Pipeline c594ec1d4f00e3ed07bb935401ba2ff6 https://www.encodeproject.org/files/ENCFF334KZK/@@download/ENCFF334KZK.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF613ZFI bigBed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF863PJZ 1351494 ENCODE Processing Pipeline 82b3b3f38ad04fad639004bca6842d07 https://www.encodeproject.org/files/ENCFF613ZFI/@@download/ENCFF613ZFI.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF763NIE bigBed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF895YFA 1749881 ENCODE Processing Pipeline dcc28cd00fa1d660d787b1d7878d5842 https://www.encodeproject.org/files/ENCFF763NIE/@@download/ENCFF763NIE.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF330CYQ bigWig signal p-value ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF197PZK, ENCFF224PDN, ENCFF366UML 470457462 ENCODE Processing Pipeline ff7350649e822e42bbd8edd1f0b91f42 https://www.encodeproject.org/files/ENCFF330CYQ/@@download/ENCFF330CYQ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF685NRB bigWig signal p-value ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF453BKE 584194031 ENCODE Processing Pipeline dc612626ac486d2fabe456d0ccba43ff https://www.encodeproject.org/files/ENCFF685NRB/@@download/ENCFF685NRB.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF041MAU bigWig signal p-value ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF197PZK, ENCFF224PDN, ENCFF366UML, ENCFF453BKE 564058264 ENCODE Processing Pipeline ad816b63a34b7d0d689ade75a248b194 https://www.encodeproject.org/files/ENCFF041MAU/@@download/ENCFF041MAU.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF012NIU bigWig fold change over control ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF197PZK, ENCFF224PDN, ENCFF366UML 470750528 ENCODE Processing Pipeline b176a400bb15299673047bca4e3adb6d https://www.encodeproject.org/files/ENCFF012NIU/@@download/ENCFF012NIU.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF720LKU bigWig fold change over control ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF453BKE 577346750 ENCODE Processing Pipeline 759135ec481e39351db42e2487effbc3 https://www.encodeproject.org/files/ENCFF720LKU/@@download/ENCFF720LKU.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF306BGE bigWig fold change over control ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF197PZK, ENCFF224PDN, ENCFF366UML, ENCFF453BKE 844713811 ENCODE Processing Pipeline ba567630f0311e69eaf04ce17733e8a2 https://www.encodeproject.org/files/ENCFF306BGE/@@download/ENCFF306BGE.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF306MDY bed narrowPeak replicated peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF334KZK, ENCFF863PJZ, ENCFF895YFA 353144 ENCODE Processing Pipeline ff0d11d371fbd2c5d3e78ff667dd80fb https://www.encodeproject.org/files/ENCFF306MDY/@@download/ENCFF306MDY.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF196NTF bigBed narrowPeak replicated peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF306MDY 820560 ENCODE Processing Pipeline 9d30a369b3411cf070b9e1db3084cfb1 https://www.encodeproject.org/files/ENCFF196NTF/@@download/ENCFF196NTF.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF885DCK bam unfiltered alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVN, ENCFF002BVS, ENCFF018NEO 3233016078 ENCODE Processing Pipeline 0a503b40038770d4872259a11f8c47f1 https://www.encodeproject.org/files/ENCFF885DCK/@@download/ENCFF885DCK.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF348HWZ bam unfiltered alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVW, ENCFF018NEO 2206090950 ENCODE Processing Pipeline 7d11baea717460d4461b533302ea91f8 https://www.encodeproject.org/files/ENCFF348HWZ/@@download/ENCFF348HWZ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF828PDR bam alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVW, ENCFF018NEO 1005907631 ENCODE Processing Pipeline 0b3006fa0a178e52eb0f1010cf803a04 https://www.encodeproject.org/files/ENCFF828PDR/@@download/ENCFF828PDR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF555EIU bam alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVN, ENCFF002BVS, ENCFF018NEO 1354952559 ENCODE Processing Pipeline dd7368185d348e59795aa7ebc5314e10 https://www.encodeproject.org/files/ENCFF555EIU/@@download/ENCFF555EIU.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF881FNR bed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF828PDR, ENCFF856WFI, ENCFF886TCK 729198 ENCODE Processing Pipeline cb646a5db2b1f7b856020fe0b271bd66 https://www.encodeproject.org/files/ENCFF881FNR/@@download/ENCFF881FNR.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF847DNJ bed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF555EIU, ENCFF856WFI, ENCFF886TCK 766772 ENCODE Processing Pipeline fa0097524848372a32fb1c18c3604572 https://www.encodeproject.org/files/ENCFF847DNJ/@@download/ENCFF847DNJ.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF423RBL bed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF555EIU, ENCFF828PDR, ENCFF856WFI, ENCFF886TCK 436686 ENCODE Processing Pipeline 99bbaf500276170736bfa647fceda73f https://www.encodeproject.org/files/ENCFF423RBL/@@download/ENCFF423RBL.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF106ZBV bigBed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF881FNR 1331632 ENCODE Processing Pipeline e5c8376aaf93e1f9a7e72c8cbdb7ea59 https://www.encodeproject.org/files/ENCFF106ZBV/@@download/ENCFF106ZBV.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF565DDK bigBed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF847DNJ 1738877 ENCODE Processing Pipeline c66314f42a6e3133565907d43e3eeb79 https://www.encodeproject.org/files/ENCFF565DDK/@@download/ENCFF565DDK.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF026XUF bigBed narrowPeak peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF423RBL 1061055 ENCODE Processing Pipeline fca3eff85cb2c31a20943ac9636f9170 https://www.encodeproject.org/files/ENCFF026XUF/@@download/ENCFF026XUF.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF130VMM bigWig signal p-value ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF828PDR, ENCFF856WFI, ENCFF886TCK 435161794 ENCODE Processing Pipeline 50558b17b4b39a68c608b73abdf78395 https://www.encodeproject.org/files/ENCFF130VMM/@@download/ENCFF130VMM.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF233CCZ bigWig signal p-value ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF555EIU, ENCFF856WFI, ENCFF886TCK 580280039 ENCODE Processing Pipeline c6317a22e48d6dcf06d4f7cf4b72333c https://www.encodeproject.org/files/ENCFF233CCZ/@@download/ENCFF233CCZ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF044GLE bigWig signal p-value ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF555EIU, ENCFF828PDR, ENCFF856WFI, ENCFF886TCK 564106341 ENCODE Processing Pipeline 8579bfd6cf39ec00dd33559aff8e2a26 https://www.encodeproject.org/files/ENCFF044GLE/@@download/ENCFF044GLE.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF855RRO bigWig fold change over control ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF828PDR, ENCFF856WFI, ENCFF886TCK 470788298 ENCODE Processing Pipeline 762c8eddb4e9ee18da9378d03b0d5afa https://www.encodeproject.org/files/ENCFF855RRO/@@download/ENCFF855RRO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF604LGP bigWig fold change over control ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF555EIU, ENCFF856WFI, ENCFF886TCK 573341690 ENCODE Processing Pipeline 7ff2142f9e46732234010bda59fa3731 https://www.encodeproject.org/files/ENCFF604LGP/@@download/ENCFF604LGP.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF207EPW bigWig fold change over control ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF555EIU, ENCFF828PDR, ENCFF856WFI, ENCFF886TCK 842354519 ENCODE Processing Pipeline fd049de590855837541536ee23a830dd https://www.encodeproject.org/files/ENCFF207EPW/@@download/ENCFF207EPW.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF386JRH bed narrowPeak replicated peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF423RBL, ENCFF847DNJ, ENCFF881FNR 345622 ENCODE Processing Pipeline 414b87973a8905043b4de5a5c4911ae6 https://www.encodeproject.org/files/ENCFF386JRH/@@download/ENCFF386JRH.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF265GCY bigBed narrowPeak replicated peaks ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF386JRH 808617 ENCODE Processing Pipeline 62f13128a5745bbaa2638f30531a0a88 https://www.encodeproject.org/files/ENCFF265GCY/@@download/ENCFF265GCY.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF938GAS fastq reads ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1869515221 Richard Myers, HAIB 4c697252bab23245ab23f30cfbf01518 SRA:SRR5112038 https://www.encodeproject.org/files/ENCFF938GAS/@@download/ENCFF938GAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF747FRP/ released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF548JVO fastq reads ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 1093521687 Richard Myers, HAIB 8b49d49f43d8bebb16ed38b91459a1a7 SRA:SRR5112039 https://www.encodeproject.org/files/ENCFF548JVO/@@download/ENCFF548JVO.fastq.gz Illumina HiSeq 2000 /files/ENCFF747FRP/ released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF407JXH bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF548JVO, ENCFF806TVZ 835576488 ENCODE Processing Pipeline c0c7c54a35bb0233a834b65dbdab72c7 https://www.encodeproject.org/files/ENCFF407JXH/@@download/ENCFF407JXH.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF625NKF bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF806TVZ, ENCFF938GAS 1264034379 ENCODE Processing Pipeline 396512a3d1faad77b4f8c51423ddc5e7 https://www.encodeproject.org/files/ENCFF625NKF/@@download/ENCFF625NKF.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF961HJP bam unfiltered alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF938GAS 1947255656 ENCODE Processing Pipeline 0588e504a3f62aa92be52b8fc76d7fca https://www.encodeproject.org/files/ENCFF961HJP/@@download/ENCFF961HJP.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF360FFU bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548JVO 835431405 ENCODE Processing Pipeline 1e724e319d509081e6a1af03cc92de0e https://www.encodeproject.org/files/ENCFF360FFU/@@download/ENCFF360FFU.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF730OUV bam unfiltered alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548JVO 1195297404 ENCODE Processing Pipeline e0827406de3c964c0a731660166fbbdd https://www.encodeproject.org/files/ENCFF730OUV/@@download/ENCFF730OUV.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF541LRE bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF938GAS 1263858982 ENCODE Processing Pipeline 456dba2a36b15d845363c2522d0c85fb https://www.encodeproject.org/files/ENCFF541LRE/@@download/ENCFF541LRE.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF432BKJ bigWig fold change over control ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF541LRE, ENCFF814DMW 522687284 ENCODE Processing Pipeline 8f9dce34fab7bc24a19042810ffc6c89 https://www.encodeproject.org/files/ENCFF432BKJ/@@download/ENCFF432BKJ.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF787PJB bigWig signal p-value ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF360FFU, ENCFF814DMW 416732946 ENCODE Processing Pipeline 5e08d25310f9498c57f764e5a6ded355 https://www.encodeproject.org/files/ENCFF787PJB/@@download/ENCFF787PJB.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF692BEK bigWig signal p-value ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF541LRE, ENCFF814DMW 525790728 ENCODE Processing Pipeline c03288ddd6f354c2c8ac193b0fe961b3 https://www.encodeproject.org/files/ENCFF692BEK/@@download/ENCFF692BEK.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF433IFE bigWig signal p-value ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF360FFU, ENCFF541LRE, ENCFF814DMW 579530895 ENCODE Processing Pipeline 5e23d285990117c66e4f40f563b8f60a https://www.encodeproject.org/files/ENCFF433IFE/@@download/ENCFF433IFE.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF816UKB bigWig fold change over control ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF360FFU, ENCFF814DMW 380318550 ENCODE Processing Pipeline f86a32d4d2f6a4ce1895945dbbb008ce https://www.encodeproject.org/files/ENCFF816UKB/@@download/ENCFF816UKB.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF619GPG bed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF360FFU, ENCFF541LRE, ENCFF814DMW 6130557 ENCODE Processing Pipeline 94e9cb15223788bbf7b93f235985ce2f https://www.encodeproject.org/files/ENCFF619GPG/@@download/ENCFF619GPG.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF251ZXL bigWig fold change over control ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF360FFU, ENCFF541LRE, ENCFF814DMW 742689251 ENCODE Processing Pipeline 88d93812b60ae6e0cd1f8f6890658e25 https://www.encodeproject.org/files/ENCFF251ZXL/@@download/ENCFF251ZXL.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF875LZX bed narrowPeak optimal idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF098DOF, ENCFF534RWN, ENCFF547MET, ENCFF619GPG 475161 ENCODE Processing Pipeline aab17bd690e9f6da9619fdce6330b377 https://www.encodeproject.org/files/ENCFF875LZX/@@download/ENCFF875LZX.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF083OYG bigBed narrowPeak optimal idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF875LZX 923823 ENCODE Processing Pipeline d95f6ee43469eadc7409829f18896177 https://www.encodeproject.org/files/ENCFF083OYG/@@download/ENCFF083OYG.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF098DOF bed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF360FFU, ENCFF814DMW 5045806 ENCODE Processing Pipeline e71b51acbfe92fa26f7759f0445306c8 https://www.encodeproject.org/files/ENCFF098DOF/@@download/ENCFF098DOF.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF506TVW bigBed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF534RWN 13466281 ENCODE Processing Pipeline 213ff81dd1c0afda586043032b342c50 https://www.encodeproject.org/files/ENCFF506TVW/@@download/ENCFF506TVW.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF453RFJ bigBed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF098DOF 11029870 ENCODE Processing Pipeline c3d42d61027544c53e106cc88a1c5cea https://www.encodeproject.org/files/ENCFF453RFJ/@@download/ENCFF453RFJ.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF534RWN bed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF541LRE, ENCFF814DMW 5707820 ENCODE Processing Pipeline 4083ba1313b4afb1cd3de65242aadeef https://www.encodeproject.org/files/ENCFF534RWN/@@download/ENCFF534RWN.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF303YGS bigBed narrowPeak conservative idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF999KRJ 839668 ENCODE Processing Pipeline ae0c44d79a86e4a7242d8f98ec0759f9 https://www.encodeproject.org/files/ENCFF303YGS/@@download/ENCFF303YGS.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF497OSW bigBed narrowPeak peaks and background as input for IDR ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF619GPG 13540188 ENCODE Processing Pipeline 34c20618f56b7db53ea74be30dd4c69b https://www.encodeproject.org/files/ENCFF497OSW/@@download/ENCFF497OSW.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF999KRJ bed narrowPeak conservative idr thresholded peaks ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF098DOF, ENCFF534RWN, ENCFF547MET, ENCFF619GPG 419678 ENCODE Processing Pipeline cb88b8902ae67a117c3a1080b2201bff https://www.encodeproject.org/files/ENCFF999KRJ/@@download/ENCFF999KRJ.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF001ZTE fastq reads ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1191716968 Bing Ren, UCSD 387031224070b781e8096a1a8c97972f SRA:SRR3652249 https://www.encodeproject.org/files/ENCFF001ZTE/@@download/ENCFF001ZTE.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUV/ released low read length ENCFF001ZTF fastq reads ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1233689746 Bing Ren, UCSD 95d179e4de5185b13796c28b9b1b37d1 SRA:SRR3652248 https://www.encodeproject.org/files/ENCFF001ZTF/@@download/ENCFF001ZTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUW/ released low read length ENCFF223WGX bam alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTF, ENCFF806TVZ 1162254858 ENCODE Processing Pipeline 931633c573710b76119d34c911e92cf4 https://www.encodeproject.org/files/ENCFF223WGX/@@download/ENCFF223WGX.bam mm10-minimal archived low read length ENCFF289BSK bam alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTE, ENCFF806TVZ 1053318891 ENCODE Processing Pipeline 1f150b1834ac740fa09b34cd74674069 https://www.encodeproject.org/files/ENCFF289BSK/@@download/ENCFF289BSK.bam mm10-minimal archived low read length ENCFF728HCZ bed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF289BSK, ENCFF972ZKQ 915174 ENCODE Processing Pipeline a284c2e1ca9cb8c35e6c62ca5d806d49 https://www.encodeproject.org/files/ENCFF728HCZ/@@download/ENCFF728HCZ.bed.gz mm10-minimal archived low read length ENCFF500QSP bigBed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF419LWR 2600076 ENCODE Processing Pipeline 648036aad0d27a678379bb87a3157d69 https://www.encodeproject.org/files/ENCFF500QSP/@@download/ENCFF500QSP.bigBed mm10-minimal archived low read length ENCFF606HDI bigBed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF728HCZ 2314716 ENCODE Processing Pipeline 4e56ec205370bfa3ec0fa09bd30f23aa https://www.encodeproject.org/files/ENCFF606HDI/@@download/ENCFF606HDI.bigBed mm10-minimal archived low read length ENCFF419LWR bed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF223WGX, ENCFF972ZKQ 829190 ENCODE Processing Pipeline b6d789d1522720fc009383a116cc25e4 https://www.encodeproject.org/files/ENCFF419LWR/@@download/ENCFF419LWR.bed.gz mm10-minimal archived low read length ENCFF983MDQ bed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF223WGX, ENCFF289BSK, ENCFF972ZKQ 702118 ENCODE Processing Pipeline e4990ef6b2247aec9503042ba05aa24b https://www.encodeproject.org/files/ENCFF983MDQ/@@download/ENCFF983MDQ.bed.gz mm10-minimal archived low read length ENCFF689HTB bigBed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF983MDQ 2219024 ENCODE Processing Pipeline 5bf87704dfb7146d240d2856d49e4e53 https://www.encodeproject.org/files/ENCFF689HTB/@@download/ENCFF689HTB.bigBed mm10-minimal archived low read length ENCFF515KOQ bigWig signal p-value ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF223WGX, ENCFF972ZKQ 503036707 ENCODE Processing Pipeline 6a1f01c8240cc1352fdabc174a592cea https://www.encodeproject.org/files/ENCFF515KOQ/@@download/ENCFF515KOQ.bigWig mm10-minimal archived low read length ENCFF206QXR bigWig signal p-value ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF289BSK, ENCFF972ZKQ 427302214 ENCODE Processing Pipeline 22e208b9c05c872055d65b42c739da21 https://www.encodeproject.org/files/ENCFF206QXR/@@download/ENCFF206QXR.bigWig mm10-minimal archived low read length ENCFF125JBS bigWig signal p-value ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF223WGX, ENCFF289BSK, ENCFF972ZKQ 502948055 ENCODE Processing Pipeline 7cdb68b03097a6e665a728f0f2b04c2d https://www.encodeproject.org/files/ENCFF125JBS/@@download/ENCFF125JBS.bigWig mm10-minimal archived low read length ENCFF115VZJ bigWig fold change over control ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF289BSK, ENCFF972ZKQ 459225980 ENCODE Processing Pipeline 7c6f3b047658ecea95a4fb806ea2bc35 https://www.encodeproject.org/files/ENCFF115VZJ/@@download/ENCFF115VZJ.bigWig mm10-minimal archived low read length ENCFF523JCY bigWig fold change over control ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF223WGX, ENCFF972ZKQ 495145460 ENCODE Processing Pipeline fd507520b696c0883dafa395099d9788 https://www.encodeproject.org/files/ENCFF523JCY/@@download/ENCFF523JCY.bigWig mm10-minimal archived low read length ENCFF376IKG bigWig fold change over control ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF223WGX, ENCFF289BSK, ENCFF972ZKQ 755995434 ENCODE Processing Pipeline 19d6fc323d28c6db5fe1a35e00c5ccad https://www.encodeproject.org/files/ENCFF376IKG/@@download/ENCFF376IKG.bigWig mm10-minimal archived low read length ENCFF996ELB bed narrowPeak replicated peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF419LWR, ENCFF728HCZ, ENCFF983MDQ 806500 ENCODE Processing Pipeline bf4227ebd0115f8bc8c9290204dddfed https://www.encodeproject.org/files/ENCFF996ELB/@@download/ENCFF996ELB.bed.gz mm10-minimal archived low read length ENCFF523CJT bigBed narrowPeak replicated peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF996ELB 1996675 ENCODE Processing Pipeline a1178c5204fa756053d0f75ecb78db0c https://www.encodeproject.org/files/ENCFF523CJT/@@download/ENCFF523CJT.bigBed mm10-minimal archived low read length ENCFF362UNN bam unfiltered alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTE, ENCFF018NEO 1539549952 ENCODE Processing Pipeline 758c142f753eadc6b77c269dc1931ca8 https://www.encodeproject.org/files/ENCFF362UNN/@@download/ENCFF362UNN.bam mm10 released low read length ENCFF991MEQ bam unfiltered alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTF, ENCFF018NEO 1584807345 ENCODE Processing Pipeline 949be4b182a9d2f480d09b286b493e96 https://www.encodeproject.org/files/ENCFF991MEQ/@@download/ENCFF991MEQ.bam mm10 released low read length ENCFF955BBU bam alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTF, ENCFF018NEO 1162070194 ENCODE Processing Pipeline 269be94afd1dffad51c01c15d315df0a https://www.encodeproject.org/files/ENCFF955BBU/@@download/ENCFF955BBU.bam mm10 released low read length ENCFF893XVE bam alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTE, ENCFF018NEO 1053075451 ENCODE Processing Pipeline c61ededfeeff3fec0fea518002d217a7 https://www.encodeproject.org/files/ENCFF893XVE/@@download/ENCFF893XVE.bam mm10 released low read length ENCFF006HMK bed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF893XVE 915272 ENCODE Processing Pipeline df1a0052db667977b544cd798ac3ce7c https://www.encodeproject.org/files/ENCFF006HMK/@@download/ENCFF006HMK.bed.gz mm10 released low read length ENCFF874ZOQ bed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF955BBU 829449 ENCODE Processing Pipeline df3bed4252e7e604892b4d02daf12c97 https://www.encodeproject.org/files/ENCFF874ZOQ/@@download/ENCFF874ZOQ.bed.gz mm10 released low read length ENCFF289DLT bed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF893XVE, ENCFF955BBU 704803 ENCODE Processing Pipeline 363cdf5f39234df36cda8551573b29b1 https://www.encodeproject.org/files/ENCFF289DLT/@@download/ENCFF289DLT.bed.gz mm10 released low read length ENCFF977PJU bigBed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006HMK 2314983 ENCODE Processing Pipeline bb67aee2c9c9e2f8e02f99811c872537 https://www.encodeproject.org/files/ENCFF977PJU/@@download/ENCFF977PJU.bigBed mm10 released low read length ENCFF217DSV bigBed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF874ZOQ 2600575 ENCODE Processing Pipeline bd2d6cc4fb50f6d957ef425dc22919ea https://www.encodeproject.org/files/ENCFF217DSV/@@download/ENCFF217DSV.bigBed mm10 released low read length ENCFF605KVF bigBed narrowPeak peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF289DLT 2234110 ENCODE Processing Pipeline 6b526781ae9e024ba1b0da06c79d3e36 https://www.encodeproject.org/files/ENCFF605KVF/@@download/ENCFF605KVF.bigBed mm10 released low read length ENCFF880QOM bigWig signal p-value ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF893XVE 407985172 ENCODE Processing Pipeline 29b3de0061c1fabb0ff3982d31223551 https://www.encodeproject.org/files/ENCFF880QOM/@@download/ENCFF880QOM.bigWig mm10 released low read length ENCFF618IQG bigWig signal p-value ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF955BBU 503052748 ENCODE Processing Pipeline 80e953dd364fc7e04e3dc9d8bc339425 https://www.encodeproject.org/files/ENCFF618IQG/@@download/ENCFF618IQG.bigWig mm10 released low read length ENCFF196NXK bigWig signal p-value ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF893XVE, ENCFF955BBU 496277989 ENCODE Processing Pipeline 0aca3bd6d2c5bb73564c7486104671ff https://www.encodeproject.org/files/ENCFF196NXK/@@download/ENCFF196NXK.bigWig mm10 released low read length ENCFF376JNZ bigWig fold change over control ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF893XVE 460257171 ENCODE Processing Pipeline 476552c2963b61bceda076e69669a3fb https://www.encodeproject.org/files/ENCFF376JNZ/@@download/ENCFF376JNZ.bigWig mm10 released low read length ENCFF444VUP bigWig fold change over control ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF955BBU 495215114 ENCODE Processing Pipeline 4f719dccca4e00dc2cc9a4ec941edbb5 https://www.encodeproject.org/files/ENCFF444VUP/@@download/ENCFF444VUP.bigWig mm10 released low read length ENCFF794MAE bigWig fold change over control ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF893XVE, ENCFF955BBU 750330926 ENCODE Processing Pipeline 946912ebd3788b02028ff7db00fd16aa https://www.encodeproject.org/files/ENCFF794MAE/@@download/ENCFF794MAE.bigWig mm10 released low read length ENCFF716QVT bed narrowPeak replicated peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006HMK, ENCFF289DLT, ENCFF874ZOQ 799157 ENCODE Processing Pipeline b0acf697ca19bbe3e74a1b6ad70e88a6 https://www.encodeproject.org/files/ENCFF716QVT/@@download/ENCFF716QVT.bed.gz mm10 released low read length ENCFF531GUL bigBed narrowPeak replicated peaks ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF716QVT 1990153 ENCODE Processing Pipeline 8aff3a824d8086df883473f6c35f6df1 https://www.encodeproject.org/files/ENCFF531GUL/@@download/ENCFF531GUL.bigBed mm10 released low read length ENCFF001MNW bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MOE 1866887794 Ross Hardison, PennState e3553169cfb849ece1cead4962da2eae https://www.encodeproject.org/files/ENCFF001MNW/@@download/ENCFF001MNW.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF001MNX bigBed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEW 45085 Ross Hardison, PennState 99966135a5d42a222ef819ac616263e7 https://www.encodeproject.org/files/ENCFF001MNX/@@download/ENCFF001MNX.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF001MNY bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MOM 6170103021 Ross Hardison, PennState 8ea9db71f247b72fa9f46efc2d928170 https://www.encodeproject.org/files/ENCFF001MNY/@@download/ENCFF001MNY.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF001MNZ bigBed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEY 42012 Ross Hardison, PennState daaf3ea2c8b9ea30450a64519488a6e3 https://www.encodeproject.org/files/ENCFF001MNZ/@@download/ENCFF001MNZ.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF001MOA bigBed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEZ 48512 Ross Hardison, PennState 7ed6108307750d47c9001c197c492afb https://www.encodeproject.org/files/ENCFF001MOA/@@download/ENCFF001MOA.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF001MOB bigWig signal ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2552627448 Ross Hardison, PennState 024bf467aa54974ba5681b3a77ee4657 https://www.encodeproject.org/files/ENCFF001MOB/@@download/ENCFF001MOB.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001MOC bigWig signal ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 4942453185 Ross Hardison, PennState d4ee235c7a4b67316a5a4dfc1ae128eb https://www.encodeproject.org/files/ENCFF001MOC/@@download/ENCFF001MOC.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001MOD bigWig signal ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 5522560497 Ross Hardison, PennState 314e8c959d6beb5a6c312439232b425b https://www.encodeproject.org/files/ENCFF001MOD/@@download/ENCFF001MOD.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001MOE fastq reads ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1462106049 Ross Hardison, PennState 1b6eb374e03692c7d3dd31e4d472727f https://www.encodeproject.org/files/ENCFF001MOE/@@download/ENCFF001MOE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, borderline replicate concordance biological replicates with identical biosample ENCFF001MOM fastq reads ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 48 single-ended 5410047752 Ross Hardison, PennState da25b76b3d6485473a134f5959becbe2 https://www.encodeproject.org/files/ENCFF001MOM/@@download/ENCFF001MOM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MPG/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, borderline replicate concordance biological replicates with identical biosample ENCFF001YEW bed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1570 Ross Hardison, PennState aa63041d295c60462b95ac0a4edbb724 https://www.encodeproject.org/files/ENCFF001YEW/@@download/ENCFF001YEW.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001YEY bed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4382 Ross Hardison, PennState 664dde7a080bfc508387c207e53d59ee https://www.encodeproject.org/files/ENCFF001YEY/@@download/ENCFF001YEY.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001YEZ bed broadPeak peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2988 Ross Hardison, PennState 5926f716b44a2839feb3966053ad5603 https://www.encodeproject.org/files/ENCFF001YEZ/@@download/ENCFF001YEZ.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF278BZL bam unfiltered alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOE, ENCFF018NEO 1785707033 ENCODE Processing Pipeline 25081b94f9347cbc42b71848a75ba972 https://www.encodeproject.org/files/ENCFF278BZL/@@download/ENCFF278BZL.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF882VKU bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOE, ENCFF018NEO 1243830020 ENCODE Processing Pipeline 769466936a01a64c0358cf6db3dab3db https://www.encodeproject.org/files/ENCFF882VKU/@@download/ENCFF882VKU.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF814FQW bam unfiltered alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOM, ENCFF018NEO 5461425540 ENCODE Processing Pipeline 4848821b2775f4fe689c4209cfb90acf https://www.encodeproject.org/files/ENCFF814FQW/@@download/ENCFF814FQW.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF951IPP bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOM, ENCFF018NEO 3507576585 ENCODE Processing Pipeline 3f7172bd8823d6cf6986e411dee9c1ad https://www.encodeproject.org/files/ENCFF951IPP/@@download/ENCFF951IPP.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF488EVU bigWig signal p-value ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF882VKU, ENCFF984QUA 970091671 ENCODE Processing Pipeline 6774f7948651e66d5ec5e94e71eed1c1 https://www.encodeproject.org/files/ENCFF488EVU/@@download/ENCFF488EVU.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF869JKR bigWig signal p-value ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF951IPP, ENCFF984QUA 1533931844 ENCODE Processing Pipeline 892b18eb32e4351a490fbc11ea4e91a5 https://www.encodeproject.org/files/ENCFF869JKR/@@download/ENCFF869JKR.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF327PYK bigWig signal p-value ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF882VKU, ENCFF951IPP, ENCFF984QUA 1472958978 ENCODE Processing Pipeline c9237d32a6c127daa3bb527cb5a9bcb5 https://www.encodeproject.org/files/ENCFF327PYK/@@download/ENCFF327PYK.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF776XID bigWig fold change over control ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF882VKU, ENCFF984QUA 966768134 ENCODE Processing Pipeline 3084428b29da581745be322169d4d2da https://www.encodeproject.org/files/ENCFF776XID/@@download/ENCFF776XID.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF949KZM bigWig fold change over control ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF951IPP, ENCFF984QUA 1633362248 ENCODE Processing Pipeline b14f7e5e78dc1d63b722c1d26bfbd3b7 https://www.encodeproject.org/files/ENCFF949KZM/@@download/ENCFF949KZM.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF716MDN bed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF951IPP, ENCFF984QUA 6984931 ENCODE Processing Pipeline 218d794ce36f076dd808890d17340d7d https://www.encodeproject.org/files/ENCFF716MDN/@@download/ENCFF716MDN.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF193XWY bed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF882VKU, ENCFF984QUA 6065493 ENCODE Processing Pipeline 57c28888a23c78307e1843cfd045bbd9 https://www.encodeproject.org/files/ENCFF193XWY/@@download/ENCFF193XWY.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF860JAB bigWig fold change over control ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF882VKU, ENCFF951IPP, ENCFF984QUA 1790133498 ENCODE Processing Pipeline f5049576d675004bdc4e908b15eeed0b https://www.encodeproject.org/files/ENCFF860JAB/@@download/ENCFF860JAB.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF355HZG bigBed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF716MDN 11187054 ENCODE Processing Pipeline 570eae413a42c68415a68b4d5cbc1624 https://www.encodeproject.org/files/ENCFF355HZG/@@download/ENCFF355HZG.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF463UEF bigBed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF327RPY 11129962 ENCODE Processing Pipeline f6e0cb623429ca76e08cb0097bc2576d https://www.encodeproject.org/files/ENCFF463UEF/@@download/ENCFF463UEF.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF237TCV bed narrowPeak optimal idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF193XWY, ENCFF327RPY, ENCFF547MET, ENCFF716MDN 951 ENCODE Processing Pipeline d2d8ad09a8285b91c3b020978fb39c95 https://www.encodeproject.org/files/ENCFF237TCV/@@download/ENCFF237TCV.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF327RPY bed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF882VKU, ENCFF951IPP, ENCFF984QUA 7229653 ENCODE Processing Pipeline 0d35dd044a65f856a6979984055aa9b8 https://www.encodeproject.org/files/ENCFF327RPY/@@download/ENCFF327RPY.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF175YPS bigBed narrowPeak peaks and background as input for IDR ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF193XWY 11418021 ENCODE Processing Pipeline b95ff3848cbe84c2b281f5f67a8e6c02 https://www.encodeproject.org/files/ENCFF175YPS/@@download/ENCFF175YPS.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF923TCW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF237TCV 35281 ENCODE Processing Pipeline e2e5d1537e35c28af98c83491a67e7d8 https://www.encodeproject.org/files/ENCFF923TCW/@@download/ENCFF923TCW.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF323BOO bed narrowPeak conservative idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF193XWY, ENCFF327RPY, ENCFF547MET, ENCFF716MDN 605 ENCODE Processing Pipeline 9105311203b93f22afbb77612eec6da7 https://www.encodeproject.org/files/ENCFF323BOO/@@download/ENCFF323BOO.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF958QIF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF323BOO 34415 ENCODE Processing Pipeline 79ae1e34a9e4d78b319d1a8dc311563f https://www.encodeproject.org/files/ENCFF958QIF/@@download/ENCFF958QIF.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF517UPB fastq reads ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1125232460 Bing Ren, UCSD 1faefb00edf424631ab93e15372feb90 SRA:SRR3652463 https://www.encodeproject.org/files/ENCFF517UPB/@@download/ENCFF517UPB.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released mild to moderate bottlenecking, moderate library complexity ENCFF765UUO fastq reads ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1690763621 Bing Ren, UCSD a7edb754b75d5405400beb9012e8f3cf SRA:SRR3652462 https://www.encodeproject.org/files/ENCFF765UUO/@@download/ENCFF765UUO.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released mild to moderate bottlenecking, moderate library complexity ENCFF629GRL bam alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF517UPB, ENCFF806TVZ 1108272539 ENCODE Processing Pipeline e4c54dfe3f6217221da92c8eff1aebef https://www.encodeproject.org/files/ENCFF629GRL/@@download/ENCFF629GRL.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF812UOB bam alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF765UUO, ENCFF806TVZ 1458042070 ENCODE Processing Pipeline 9322e5fa4f48105c0e7adce71c7ef898 https://www.encodeproject.org/files/ENCFF812UOB/@@download/ENCFF812UOB.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF073GXD bed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF629GRL 1174018 ENCODE Processing Pipeline 3e1563d5cd945cce139d7ac76f065046 https://www.encodeproject.org/files/ENCFF073GXD/@@download/ENCFF073GXD.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF809EJT bigWig signal p-value ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF812UOB 524214054 ENCODE Processing Pipeline 2691a2d6d96dd97e1d9138ae49bfe9d2 https://www.encodeproject.org/files/ENCFF809EJT/@@download/ENCFF809EJT.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF625BIO bed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF812UOB 1035766 ENCODE Processing Pipeline 1288d87fdc27abc21cf8d9ba3b33b33f https://www.encodeproject.org/files/ENCFF625BIO/@@download/ENCFF625BIO.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF798MKT bed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF629GRL, ENCFF812UOB 1273559 ENCODE Processing Pipeline b9c75c6713c7a1e563fd7327748c43ef https://www.encodeproject.org/files/ENCFF798MKT/@@download/ENCFF798MKT.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF961RRO bigBed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF625BIO 2540865 ENCODE Processing Pipeline c4e4a25db3528827f7f2d900888beaea https://www.encodeproject.org/files/ENCFF961RRO/@@download/ENCFF961RRO.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF679ALM bigBed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF073GXD 2863165 ENCODE Processing Pipeline f8e79107aa7348803c72c68bd8065cf0 https://www.encodeproject.org/files/ENCFF679ALM/@@download/ENCFF679ALM.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF106EYO bigBed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF798MKT 2984760 ENCODE Processing Pipeline 87ed3131f15eff2d430cb0e31874a367 https://www.encodeproject.org/files/ENCFF106EYO/@@download/ENCFF106EYO.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF656WSY bigWig signal p-value ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF629GRL 510605145 ENCODE Processing Pipeline d0114e3627a5a6d19de004530566fea9 https://www.encodeproject.org/files/ENCFF656WSY/@@download/ENCFF656WSY.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF539JLO bigWig signal p-value ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF629GRL, ENCFF812UOB 869327527 ENCODE Processing Pipeline f7d76495fe49472d227755ae6e741b8e https://www.encodeproject.org/files/ENCFF539JLO/@@download/ENCFF539JLO.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF301HLJ bigWig fold change over control ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF812UOB 658428226 ENCODE Processing Pipeline 132c78a9f600b3f83a98d6b08cf15836 https://www.encodeproject.org/files/ENCFF301HLJ/@@download/ENCFF301HLJ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF788SQZ bigWig fold change over control ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF629GRL 540562721 ENCODE Processing Pipeline 97fd73000d5cf44147b614d43fc39825 https://www.encodeproject.org/files/ENCFF788SQZ/@@download/ENCFF788SQZ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF803WSD bigWig fold change over control ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF629GRL, ENCFF812UOB 1172805530 ENCODE Processing Pipeline a2243fda86d669167d80774ab99db3e8 https://www.encodeproject.org/files/ENCFF803WSD/@@download/ENCFF803WSD.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF950QDE bed narrowPeak replicated peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF073GXD, ENCFF625BIO, ENCFF798MKT 818653 ENCODE Processing Pipeline 7b87b1751e56840921e966d5a8529f78 https://www.encodeproject.org/files/ENCFF950QDE/@@download/ENCFF950QDE.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF043CZI bigBed narrowPeak replicated peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF950QDE 1979291 ENCODE Processing Pipeline 2647ae305e0ec095f51fc3f5cf537460 https://www.encodeproject.org/files/ENCFF043CZI/@@download/ENCFF043CZI.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF571LFR bam unfiltered alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF765UUO 2216528449 ENCODE Processing Pipeline 6327546a746fb2b35e1922db8e68d3a7 https://www.encodeproject.org/files/ENCFF571LFR/@@download/ENCFF571LFR.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF576RCG bam alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF765UUO 1457728914 ENCODE Processing Pipeline 01ffa4590ddcffdc6f50b95b7c0e02e3 https://www.encodeproject.org/files/ENCFF576RCG/@@download/ENCFF576RCG.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF650XSO bam unfiltered alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF517UPB 1537856874 ENCODE Processing Pipeline 5c4aff461a1619dfd604d76c150e26e8 https://www.encodeproject.org/files/ENCFF650XSO/@@download/ENCFF650XSO.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF277PFV bam alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF517UPB 1108005159 ENCODE Processing Pipeline 30153e7a6c47775d485012c949a5dec6 https://www.encodeproject.org/files/ENCFF277PFV/@@download/ENCFF277PFV.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF388AQF bed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF576RCG, ENCFF652BTE 1036053 ENCODE Processing Pipeline fc862ba6b095f70c876b51cce642c690 https://www.encodeproject.org/files/ENCFF388AQF/@@download/ENCFF388AQF.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF991QGS bed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF277PFV 1173716 ENCODE Processing Pipeline f8b3ca48445825de5ddc2b5711558f77 https://www.encodeproject.org/files/ENCFF991QGS/@@download/ENCFF991QGS.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF421ZWZ bed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF277PFV, ENCFF576RCG, ENCFF652BTE 1273661 ENCODE Processing Pipeline 67a5d1a22af0bafe1bacd1e9c619f194 https://www.encodeproject.org/files/ENCFF421ZWZ/@@download/ENCFF421ZWZ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF554DAV bigBed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF388AQF 2543242 ENCODE Processing Pipeline 88a30d6a7f10a614979c5c2457cb01ac https://www.encodeproject.org/files/ENCFF554DAV/@@download/ENCFF554DAV.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF384NJU bigBed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF991QGS 2865723 ENCODE Processing Pipeline 1d7880b482be0a561875a224d4996354 https://www.encodeproject.org/files/ENCFF384NJU/@@download/ENCFF384NJU.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF456PMU bigBed narrowPeak peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF421ZWZ 2984650 ENCODE Processing Pipeline c4cc94fe8ba6eb7c18862141a438b435 https://www.encodeproject.org/files/ENCFF456PMU/@@download/ENCFF456PMU.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF540CZH bigWig signal p-value ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF576RCG, ENCFF652BTE 533888947 ENCODE Processing Pipeline 74677bfdc33ef9cc65278fd49abe4eb7 https://www.encodeproject.org/files/ENCFF540CZH/@@download/ENCFF540CZH.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF337BRH bigWig signal p-value ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF277PFV 536499865 ENCODE Processing Pipeline d2d7cb49b92dfe46ca4acbd685b6f385 https://www.encodeproject.org/files/ENCFF337BRH/@@download/ENCFF337BRH.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF121VIZ bigWig signal p-value ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF277PFV, ENCFF576RCG, ENCFF652BTE 1192781219 ENCODE Processing Pipeline a45e079fb914b439be87ec9e980ab4c3 https://www.encodeproject.org/files/ENCFF121VIZ/@@download/ENCFF121VIZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF946RQE bigWig fold change over control ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF576RCG, ENCFF652BTE 658767304 ENCODE Processing Pipeline 8089e4373222dfa65063cf6b4c09276e https://www.encodeproject.org/files/ENCFF946RQE/@@download/ENCFF946RQE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF103GHR bigWig fold change over control ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF277PFV 532163375 ENCODE Processing Pipeline c3195f63bebcf16a0f2a5cc7e6f3ed65 https://www.encodeproject.org/files/ENCFF103GHR/@@download/ENCFF103GHR.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF017FCI bigWig fold change over control ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF277PFV, ENCFF576RCG, ENCFF652BTE 1167271468 ENCODE Processing Pipeline c1c8f1cf71e77f95a15c321a2d3f7e63 https://www.encodeproject.org/files/ENCFF017FCI/@@download/ENCFF017FCI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF503HPO bed narrowPeak replicated peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF388AQF, ENCFF421ZWZ, ENCFF991QGS 826127 ENCODE Processing Pipeline f2c7a8f0366830cdd6b5c209b7ac4b0a https://www.encodeproject.org/files/ENCFF503HPO/@@download/ENCFF503HPO.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF538FRT bigBed narrowPeak replicated peaks ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF503HPO 1996456 ENCODE Processing Pipeline 15e8343a36acd4346605e87a20b8a6e2 https://www.encodeproject.org/files/ENCFF538FRT/@@download/ENCFF538FRT.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF001NZW bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NZZ 336147114 Michael Snyder, Stanford af4abb2b69d60d22a51310affa1274e1 https://www.encodeproject.org/files/ENCFF001NZW/@@download/ENCFF001NZW.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001NZX bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OAB 321355725 Michael Snyder, Stanford 04a705fbd9afd22c4d5739b936741cdb https://www.encodeproject.org/files/ENCFF001NZX/@@download/ENCFF001NZX.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001NZY bigBed narrowPeak peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKG 232535 Michael Snyder, Stanford a654f9e3a407fd364d60293dcc0797a9 https://www.encodeproject.org/files/ENCFF001NZY/@@download/ENCFF001NZY.bigBed mm9 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001NZZ fastq reads ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 981501386 Michael Snyder, Stanford b7bb2897c6e833cf8c346f97f4bc0cd0 https://www.encodeproject.org/files/ENCFF001NZZ/@@download/ENCFF001NZZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NUK/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001OAB fastq reads ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 885168689 Michael Snyder, Stanford 9c57726f8e8b5c0ea33cf3c98cfa106b https://www.encodeproject.org/files/ENCFF001OAB/@@download/ENCFF001OAB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NUK/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001OAD bigWig signal ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NZW, ENCFF001NZX 311304052 Michael Snyder, Stanford 6c322cf25b8788d3e6d8f05734a07686 https://www.encodeproject.org/files/ENCFF001OAD/@@download/ENCFF001OAD.bigWig mm9 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001YKG bed narrowPeak peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NZW, ENCFF001NZX 78055 Michael Snyder, Stanford 798d5816592dd91660fd2e8392470b72 https://www.encodeproject.org/files/ENCFF001YKG/@@download/ENCFF001YKG.bed.gz mm9 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF926MJV bam unfiltered alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NZZ, ENCFF018NEO 962198316 ENCODE Processing Pipeline 806bde806af47d4aee9f9335bc714696 https://www.encodeproject.org/files/ENCFF926MJV/@@download/ENCFF926MJV.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF731OEQ bam unfiltered alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAB, ENCFF018NEO 867168487 ENCODE Processing Pipeline 01f7bae8a793b8dd7ed4cb7fb13a31be https://www.encodeproject.org/files/ENCFF731OEQ/@@download/ENCFF731OEQ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF206APZ bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAB, ENCFF018NEO 388544918 ENCODE Processing Pipeline 51f2648eb0e121be2e73668e87f7a558 https://www.encodeproject.org/files/ENCFF206APZ/@@download/ENCFF206APZ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF251WMT bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NZZ, ENCFF018NEO 384417298 ENCODE Processing Pipeline 0690ff1011df2eb824e7a23413a21fd5 https://www.encodeproject.org/files/ENCFF251WMT/@@download/ENCFF251WMT.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF012BQJ bigWig signal p-value ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF017EBX, ENCFF251WMT 297923094 ENCODE Processing Pipeline dcd8f1f4bd6de8c285fce8804c935391 https://www.encodeproject.org/files/ENCFF012BQJ/@@download/ENCFF012BQJ.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF980GDG bigWig signal p-value ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF017EBX, ENCFF206APZ 288449052 ENCODE Processing Pipeline 8f013eafe5a7f2f349ab1640ad58ff3a https://www.encodeproject.org/files/ENCFF980GDG/@@download/ENCFF980GDG.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF869VGC bigWig signal p-value ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017EBX, ENCFF206APZ, ENCFF251WMT 405061219 ENCODE Processing Pipeline 0cb0e8991d34c1da7578739894b9a339 https://www.encodeproject.org/files/ENCFF869VGC/@@download/ENCFF869VGC.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF794TVA bigWig fold change over control ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF017EBX, ENCFF251WMT 196681499 ENCODE Processing Pipeline 3bc36da8185a53cf7bbd92a6b6158775 https://www.encodeproject.org/files/ENCFF794TVA/@@download/ENCFF794TVA.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF364JSW bigWig fold change over control ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF017EBX, ENCFF206APZ 209093221 ENCODE Processing Pipeline 0aca9cc15103b89f785fd95aa52528d9 https://www.encodeproject.org/files/ENCFF364JSW/@@download/ENCFF364JSW.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF790OHZ bigWig fold change over control ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017EBX, ENCFF206APZ, ENCFF251WMT 365348005 ENCODE Processing Pipeline ded9969674d983489edf70047baecb23 https://www.encodeproject.org/files/ENCFF790OHZ/@@download/ENCFF790OHZ.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF261QKD bed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF017EBX, ENCFF251WMT 3898919 ENCODE Processing Pipeline 62e22ca272553d94ac40af2100068f7d https://www.encodeproject.org/files/ENCFF261QKD/@@download/ENCFF261QKD.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF625GKR bed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF017EBX, ENCFF206APZ 4997166 ENCODE Processing Pipeline 465925ccf3dbfe418c3a5967348545ae https://www.encodeproject.org/files/ENCFF625GKR/@@download/ENCFF625GKR.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF998UBT bed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017EBX, ENCFF206APZ, ENCFF251WMT 5750560 ENCODE Processing Pipeline 57bdbf7c508acf0a85ef79013f53da00 https://www.encodeproject.org/files/ENCFF998UBT/@@download/ENCFF998UBT.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF675OVJ bigBed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF261QKD 9644619 ENCODE Processing Pipeline 014fda55a845da70e65c1cced62d0177 https://www.encodeproject.org/files/ENCFF675OVJ/@@download/ENCFF675OVJ.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF941FHL bigBed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF625GKR 12752504 ENCODE Processing Pipeline 2838fd6932952c65a45bc80ada5a8842 https://www.encodeproject.org/files/ENCFF941FHL/@@download/ENCFF941FHL.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF220OYK bed narrowPeak conservative idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF261QKD, ENCFF547MET, ENCFF625GKR, ENCFF998UBT 99173 ENCODE Processing Pipeline d9670fab892cc9b9cd6ecd2ddf50c533 https://www.encodeproject.org/files/ENCFF220OYK/@@download/ENCFF220OYK.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF186NFT bigBed narrowPeak peaks and background as input for IDR ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF998UBT 13137529 ENCODE Processing Pipeline ab45da04bfe538aa52ca12b762fefa1b https://www.encodeproject.org/files/ENCFF186NFT/@@download/ENCFF186NFT.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF040DWG bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF220OYK 267157 ENCODE Processing Pipeline bfc5753f10f6aa6e8b4b803e89cb5e44 https://www.encodeproject.org/files/ENCFF040DWG/@@download/ENCFF040DWG.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF633EAU bed narrowPeak optimal idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF261QKD, ENCFF547MET, ENCFF625GKR, ENCFF998UBT 129470 ENCODE Processing Pipeline 935cc47905af07cb1433dc0cb5a00845 https://www.encodeproject.org/files/ENCFF633EAU/@@download/ENCFF633EAU.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF469ZIW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF633EAU 368676 ENCODE Processing Pipeline fe981078a8fde5e670a2a417da3bddb4 https://www.encodeproject.org/files/ENCFF469ZIW/@@download/ENCFF469ZIW.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001ZTI fastq reads ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1011942970 Bing Ren, UCSD 68cdb5b4c3476c588a0c1fe56f807ea7 SRA:SRR3653291 https://www.encodeproject.org/files/ENCFF001ZTI/@@download/ENCFF001ZTI.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZTL fastq reads ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 959877905 Bing Ren, UCSD 1cd6002cd1dc2a24355e01956de645dc SRA:SRR3653293 https://www.encodeproject.org/files/ENCFF001ZTL/@@download/ENCFF001ZTL.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF107TLH fastq reads ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 999655733 Bing Ren, UCSD 3aa67b4b5f7aa78f65bbfec8934e368c SRA:SRR3653294 https://www.encodeproject.org/files/ENCFF107TLH/@@download/ENCFF107TLH.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF954LPU fastq reads ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 729638823 Bing Ren, UCSD 331b5551913386653e06b43235566e6d SRA:SRR3653292 https://www.encodeproject.org/files/ENCFF954LPU/@@download/ENCFF954LPU.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/, /files/ENCFF825VCS/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF609YLJ bam alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTI, ENCFF806TVZ, ENCFF954LPU 1250616319 ENCODE Processing Pipeline cb54f5c52e5e732377fc57de174324b1 https://www.encodeproject.org/files/ENCFF609YLJ/@@download/ENCFF609YLJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF529CGH bam alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTL, ENCFF107TLH, ENCFF806TVZ 1431829886 ENCODE Processing Pipeline 6c13f7979740aceaf4089f4a171cacbd https://www.encodeproject.org/files/ENCFF529CGH/@@download/ENCFF529CGH.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133NFU bigBed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF970GKN 1448954 ENCODE Processing Pipeline 88950eb0d6c766c5088d6f25ef7e8c09 https://www.encodeproject.org/files/ENCFF133NFU/@@download/ENCFF133NFU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF174NGR bigWig signal p-value ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF529CGH, ENCFF609YLJ, ENCFF695ODM 493972889 ENCODE Processing Pipeline 47ea4f6ff2e89ee3cbd105ae7a8788c4 https://www.encodeproject.org/files/ENCFF174NGR/@@download/ENCFF174NGR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF163YUD bigWig fold change over control ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF529CGH, ENCFF609YLJ, ENCFF695ODM 744350875 ENCODE Processing Pipeline a5e6c7b596c1f0fd47d31139ac13a2ba https://www.encodeproject.org/files/ENCFF163YUD/@@download/ENCFF163YUD.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF920OAX bed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF609YLJ, ENCFF695ODM 998423 ENCODE Processing Pipeline 791ca338d1ef999960227fb6b8726e7a https://www.encodeproject.org/files/ENCFF920OAX/@@download/ENCFF920OAX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF968OWC bed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF529CGH, ENCFF695ODM 1027516 ENCODE Processing Pipeline e49b21f864dd310b467bd90a20d4b4c0 https://www.encodeproject.org/files/ENCFF968OWC/@@download/ENCFF968OWC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF970GKN bed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF529CGH, ENCFF609YLJ, ENCFF695ODM 709248 ENCODE Processing Pipeline 1dbe917064c556a8b8a253e82f131a98 https://www.encodeproject.org/files/ENCFF970GKN/@@download/ENCFF970GKN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF400BJW bigBed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF920OAX 2294827 ENCODE Processing Pipeline 888ff36c3f6853c99e5d0e174a09ecc2 https://www.encodeproject.org/files/ENCFF400BJW/@@download/ENCFF400BJW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF660LCB bigWig signal p-value ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF529CGH, ENCFF695ODM 485936833 ENCODE Processing Pipeline ff73df7f36af4b8b8eb683d54c4f869f https://www.encodeproject.org/files/ENCFF660LCB/@@download/ENCFF660LCB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF804CQJ bigBed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF968OWC 2101182 ENCODE Processing Pipeline d0c20c064303619cf38134fb533ecf01 https://www.encodeproject.org/files/ENCFF804CQJ/@@download/ENCFF804CQJ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF537KDE bigWig signal p-value ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF609YLJ, ENCFF695ODM 441154953 ENCODE Processing Pipeline ac98946e73c7479edbae345656199aeb https://www.encodeproject.org/files/ENCFF537KDE/@@download/ENCFF537KDE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF559QCS bigWig fold change over control ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF609YLJ, ENCFF695ODM 444528136 ENCODE Processing Pipeline 366db9b4868c64f8b363df6a0599df26 https://www.encodeproject.org/files/ENCFF559QCS/@@download/ENCFF559QCS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF111TBW bigWig fold change over control ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF529CGH, ENCFF695ODM 483582735 ENCODE Processing Pipeline c0c90ef93a0d35f372b96563b42ae465 https://www.encodeproject.org/files/ENCFF111TBW/@@download/ENCFF111TBW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF862MZQ bed narrowPeak replicated peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF920OAX, ENCFF968OWC, ENCFF970GKN 637641 ENCODE Processing Pipeline ad4ffc7ba46578b09cf4630139973fab https://www.encodeproject.org/files/ENCFF862MZQ/@@download/ENCFF862MZQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF929GZW bigBed narrowPeak replicated peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF862MZQ 1471393 ENCODE Processing Pipeline 0d239c79335d0a9d5ec41a1f3aa29008 https://www.encodeproject.org/files/ENCFF929GZW/@@download/ENCFF929GZW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF697JRA bam unfiltered alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTI, ENCFF018NEO, ENCFF954LPU 1977055090 ENCODE Processing Pipeline df319eccc24c9b03c1173451c2ec1651 https://www.encodeproject.org/files/ENCFF697JRA/@@download/ENCFF697JRA.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF854DPK bam alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTI, ENCFF018NEO, ENCFF954LPU 1100632064 ENCODE Processing Pipeline 8c38f114330953446df821dfc887eeb4 https://www.encodeproject.org/files/ENCFF854DPK/@@download/ENCFF854DPK.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF406RCS bam unfiltered alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTL, ENCFF018NEO, ENCFF107TLH 2161402148 ENCODE Processing Pipeline 078390882f42e0a072abb3a4c0cdc7ec https://www.encodeproject.org/files/ENCFF406RCS/@@download/ENCFF406RCS.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF330LCP bam alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTL, ENCFF018NEO, ENCFF107TLH 1231269315 ENCODE Processing Pipeline 84d00a59b0557c7d746e855af5731de8 https://www.encodeproject.org/files/ENCFF330LCP/@@download/ENCFF330LCP.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF157KLW bed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF631YQS, ENCFF658BBR, ENCFF854DPK 957633 ENCODE Processing Pipeline 0ee97e0616e26e0e1c0ec82fc9166833 https://www.encodeproject.org/files/ENCFF157KLW/@@download/ENCFF157KLW.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF418ITT bed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF330LCP, ENCFF631YQS, ENCFF658BBR, ENCFF854DPK 695447 ENCODE Processing Pipeline 682a325ded0d2e0ecdd2472b38d4c726 https://www.encodeproject.org/files/ENCFF418ITT/@@download/ENCFF418ITT.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF236VFM bed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF330LCP, ENCFF631YQS, ENCFF658BBR 982991 ENCODE Processing Pipeline 3a29ad96fb446d2cebc788adbc0f3672 https://www.encodeproject.org/files/ENCFF236VFM/@@download/ENCFF236VFM.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF839MQZ bigBed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF157KLW 2202000 ENCODE Processing Pipeline 95de980819fb27c4899fda235b89f61f https://www.encodeproject.org/files/ENCFF839MQZ/@@download/ENCFF839MQZ.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF027JQS bigBed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF236VFM 2015878 ENCODE Processing Pipeline 4944fc42c69d4b2870af620fb7a0c6eb https://www.encodeproject.org/files/ENCFF027JQS/@@download/ENCFF027JQS.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF391KAP bigBed narrowPeak peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF418ITT 1793715 ENCODE Processing Pipeline 288f924599c80ba0f9f38e57bb780921 https://www.encodeproject.org/files/ENCFF391KAP/@@download/ENCFF391KAP.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF019DWG bigWig signal p-value ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF631YQS, ENCFF658BBR, ENCFF854DPK 349015561 ENCODE Processing Pipeline 76f0bc1440aa4dd78cf0df3b3ac64207 https://www.encodeproject.org/files/ENCFF019DWG/@@download/ENCFF019DWG.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF940QES bigWig signal p-value ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF330LCP, ENCFF631YQS, ENCFF658BBR 467395332 ENCODE Processing Pipeline 8da901979b65fcbae238955aaf6b81b5 https://www.encodeproject.org/files/ENCFF940QES/@@download/ENCFF940QES.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF867CPQ bigWig signal p-value ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF330LCP, ENCFF631YQS, ENCFF658BBR, ENCFF854DPK 488316788 ENCODE Processing Pipeline e4f4aaa75bf2092ebb34381f8af1d8f9 https://www.encodeproject.org/files/ENCFF867CPQ/@@download/ENCFF867CPQ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF446LKD bigWig fold change over control ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF631YQS, ENCFF658BBR, ENCFF854DPK 439867079 ENCODE Processing Pipeline 555a383fa604ff071aa393110a4f2b8d https://www.encodeproject.org/files/ENCFF446LKD/@@download/ENCFF446LKD.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF106PQZ bigWig fold change over control ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF330LCP, ENCFF631YQS, ENCFF658BBR 464439588 ENCODE Processing Pipeline acac903d92d320b0dd90b7f978e6c3a7 https://www.encodeproject.org/files/ENCFF106PQZ/@@download/ENCFF106PQZ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF375ONW bigWig fold change over control ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF330LCP, ENCFF631YQS, ENCFF658BBR, ENCFF854DPK 739079108 ENCODE Processing Pipeline 1dab0d67bb26e9f669d0b297841ca50b https://www.encodeproject.org/files/ENCFF375ONW/@@download/ENCFF375ONW.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF592HST bed narrowPeak replicated peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF157KLW, ENCFF236VFM, ENCFF418ITT 637947 ENCODE Processing Pipeline c1597ca7cf4114195085ff9dcc594555 https://www.encodeproject.org/files/ENCFF592HST/@@download/ENCFF592HST.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF309QKW bigBed narrowPeak replicated peaks ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF592HST 1462643 ENCODE Processing Pipeline e6689d99b77b36712de5a1e82dc23374 https://www.encodeproject.org/files/ENCFF309QKW/@@download/ENCFF309QKW.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001NIN bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NIP 431523762 Michael Snyder, Stanford 060724bab77dc6fdf5250b376d54c94b https://www.encodeproject.org/files/ENCFF001NIN/@@download/ENCFF001NIN.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NIO bigBed narrowPeak peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIE 1566596 Michael Snyder, Stanford 95a13592b5e43e2c38fdb8b46f53237f https://www.encodeproject.org/files/ENCFF001NIO/@@download/ENCFF001NIO.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NIP fastq reads ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 950892073 Michael Snyder, Stanford 201ab3402ae4068701aee662eaa580ec https://www.encodeproject.org/files/ENCFF001NIP/@@download/ENCFF001NIP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NIR bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NIS 456458854 Michael Snyder, Stanford ea2df0927dacc99c11b2798ec5fac7ac https://www.encodeproject.org/files/ENCFF001NIR/@@download/ENCFF001NIR.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NIS fastq reads ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 887267779 Michael Snyder, Stanford 47855420b6223eb8847c4a781f06bdfd https://www.encodeproject.org/files/ENCFF001NIS/@@download/ENCFF001NIS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NIU bigWig signal ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NIN, ENCFF001NIR 328446682 Michael Snyder, Stanford 776cf70b40646033e62d729195793516 https://www.encodeproject.org/files/ENCFF001NIU/@@download/ENCFF001NIU.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001YIE bed narrowPeak peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NIN, ENCFF001NIR 653378 Michael Snyder, Stanford 319be710f54e38853d7de21e9feeed16 https://www.encodeproject.org/files/ENCFF001YIE/@@download/ENCFF001YIE.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF292CFP bam unfiltered alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NIS, ENCFF018NEO 970029547 ENCODE Processing Pipeline 0e71f736f6bed25c076f9fe594e0387a https://www.encodeproject.org/files/ENCFF292CFP/@@download/ENCFF292CFP.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF312SDO bam unfiltered alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NIP, ENCFF018NEO 994211503 ENCODE Processing Pipeline 753a2e6fbd0ab52462e7b89b93bc7dca https://www.encodeproject.org/files/ENCFF312SDO/@@download/ENCFF312SDO.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF969YRT bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NIS, ENCFF018NEO 659552769 ENCODE Processing Pipeline 1a19668d7e8269b91f6647ea3ccbc6d3 https://www.encodeproject.org/files/ENCFF969YRT/@@download/ENCFF969YRT.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF752EYZ bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NIP, ENCFF018NEO 586188844 ENCODE Processing Pipeline fa8f55d35fe8e22b98e517b661062965 https://www.encodeproject.org/files/ENCFF752EYZ/@@download/ENCFF752EYZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF123FEC bigWig signal p-value ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF752EYZ 237626369 ENCODE Processing Pipeline a9c0e3a1fc0b7611f01afb02c734bf48 https://www.encodeproject.org/files/ENCFF123FEC/@@download/ENCFF123FEC.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF196ECE bigWig fold change over control ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF752EYZ 246418865 ENCODE Processing Pipeline 16b3323e8e9ef57b7fcee7dc1810acb2 https://www.encodeproject.org/files/ENCFF196ECE/@@download/ENCFF196ECE.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF739LTJ bigWig signal p-value ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF969YRT 232355843 ENCODE Processing Pipeline 458223c38a239d41a9baa0f3c960c293 https://www.encodeproject.org/files/ENCFF739LTJ/@@download/ENCFF739LTJ.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF588GMG bigWig signal p-value ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF752EYZ, ENCFF969YRT 209148184 ENCODE Processing Pipeline 6c6a6abceb0890449028f49da410ed2d https://www.encodeproject.org/files/ENCFF588GMG/@@download/ENCFF588GMG.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF154GGD bigWig fold change over control ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF969YRT 279234730 ENCODE Processing Pipeline fd54342264b061396f179742b6ce75c2 https://www.encodeproject.org/files/ENCFF154GGD/@@download/ENCFF154GGD.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF334SDJ bed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF969YRT 5138953 ENCODE Processing Pipeline def08d96215283ae3aea5c45a10fee09 https://www.encodeproject.org/files/ENCFF334SDJ/@@download/ENCFF334SDJ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF283POK bigWig fold change over control ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF752EYZ, ENCFF969YRT 460064885 ENCODE Processing Pipeline 12341b4b35fc8bcfb5fe60f2258976c0 https://www.encodeproject.org/files/ENCFF283POK/@@download/ENCFF283POK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF436RKB bed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF752EYZ 3947811 ENCODE Processing Pipeline 5c69138b6b2f2de60e08d4dab6f9e362 https://www.encodeproject.org/files/ENCFF436RKB/@@download/ENCFF436RKB.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF268WMK bed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF752EYZ, ENCFF969YRT 5890090 ENCODE Processing Pipeline c711b6ce18d05f800d5981bb87206e97 https://www.encodeproject.org/files/ENCFF268WMK/@@download/ENCFF268WMK.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF041QIM bigBed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF436RKB 9461956 ENCODE Processing Pipeline ebaab249bb2cd1ad31b1dd423df04c5f https://www.encodeproject.org/files/ENCFF041QIM/@@download/ENCFF041QIM.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF611FZC bigBed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF334SDJ 12624787 ENCODE Processing Pipeline 1678f9f986dc0949ee41b88b85fbb9b7 https://www.encodeproject.org/files/ENCFF611FZC/@@download/ENCFF611FZC.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF110QFE bigBed narrowPeak peaks and background as input for IDR ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF268WMK 12816396 ENCODE Processing Pipeline 9bf00da98e5b15bc6b943325048b1aef https://www.encodeproject.org/files/ENCFF110QFE/@@download/ENCFF110QFE.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF448FEQ bed narrowPeak conservative idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF268WMK, ENCFF334SDJ, ENCFF436RKB, ENCFF547MET 359619 ENCODE Processing Pipeline b12db017e06ccabc32be1bc712b4f00f https://www.encodeproject.org/files/ENCFF448FEQ/@@download/ENCFF448FEQ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF614MFN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF448FEQ 809819 ENCODE Processing Pipeline f763b20cd021596be71a990fc965eeeb https://www.encodeproject.org/files/ENCFF614MFN/@@download/ENCFF614MFN.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF906DFS bed narrowPeak optimal idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF268WMK, ENCFF334SDJ, ENCFF436RKB, ENCFF547MET 393347 ENCODE Processing Pipeline 8266a5880dae3cfafd756d4afe6e307e https://www.encodeproject.org/files/ENCFF906DFS/@@download/ENCFF906DFS.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF749BJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF906DFS 870041 ENCODE Processing Pipeline abceed81cf95cf6f58b7d31d39e3e190 https://www.encodeproject.org/files/ENCFF749BJO/@@download/ENCFF749BJO.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001KDV bigBed broadPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWS 1177640 Bing Ren, UCSD ed3e7d042918359d7c8d8895b35287fb https://www.encodeproject.org/files/ENCFF001KDV/@@download/ENCFF001KDV.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDW bam alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KEE 1815423673 Bing Ren, UCSD a0643d421eff034859c71f4d4487c8c2 https://www.encodeproject.org/files/ENCFF001KDW/@@download/ENCFF001KDW.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDX bam alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KEI 1729068899 Bing Ren, UCSD 22b852d88d132fb0e98410349e7d0ce0 https://www.encodeproject.org/files/ENCFF001KDX/@@download/ENCFF001KDX.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDY bigWig signal ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KDW, ENCFF001KDX 55980325 Bing Ren, UCSD 7814e690cef224d10802a49778b97ae8 https://www.encodeproject.org/files/ENCFF001KDY/@@download/ENCFF001KDY.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KEE fastq reads ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1885057416 Bing Ren, UCSD 64832e06a48507c8039dd667a51bd82a https://www.encodeproject.org/files/ENCFF001KEE/@@download/ENCFF001KEE.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEU/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KEI fastq reads ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1757141718 Bing Ren, UCSD 07f7f9cc4046e88410cf12f355130930 https://www.encodeproject.org/files/ENCFF001KEI/@@download/ENCFF001KEI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEX/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XWS bed broadPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KDW, ENCFF001KDX 800293 Bing Ren, UCSD d0fda2124a75184a24deba1b52e85220 https://www.encodeproject.org/files/ENCFF001XWS/@@download/ENCFF001XWS.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF290AQH bam unfiltered alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KEI, ENCFF018NEO 1846397354 ENCODE Processing Pipeline 800396cbf64a75222321da8b4ff153b1 https://www.encodeproject.org/files/ENCFF290AQH/@@download/ENCFF290AQH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF165HSL bam unfiltered alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KEE, ENCFF018NEO 1922766827 ENCODE Processing Pipeline 9ab9b785d64c1fd75ac895fdd9a705b5 https://www.encodeproject.org/files/ENCFF165HSL/@@download/ENCFF165HSL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF645XPU bam alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KEE, ENCFF018NEO 608519625 ENCODE Processing Pipeline e826ad6c84d38b3088844d042bfddba1 https://www.encodeproject.org/files/ENCFF645XPU/@@download/ENCFF645XPU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF271EBY bam alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KEI, ENCFF018NEO 755688701 ENCODE Processing Pipeline bb85fc3ca7fd71629d3bb158e833c649 https://www.encodeproject.org/files/ENCFF271EBY/@@download/ENCFF271EBY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF448EXB bed narrowPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF439WCI, ENCFF645XPU, ENCFF683TKC 3345951 ENCODE Processing Pipeline 56f87ec636587115b3380f663ff7c37c https://www.encodeproject.org/files/ENCFF448EXB/@@download/ENCFF448EXB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF924AAY bed narrowPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF271EBY, ENCFF439WCI, ENCFF645XPU, ENCFF683TKC 2803587 ENCODE Processing Pipeline 5fb078bc42294301ab9537ead742603d https://www.encodeproject.org/files/ENCFF924AAY/@@download/ENCFF924AAY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF217DWJ bigBed narrowPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF197NIF 7198131 ENCODE Processing Pipeline 24b729c72749519fdcb7a8ae0bd6b233 https://www.encodeproject.org/files/ENCFF217DWJ/@@download/ENCFF217DWJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF564NQY bigBed narrowPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF924AAY 6478840 ENCODE Processing Pipeline 8fb4f3834cda79eecec5df221f312bae https://www.encodeproject.org/files/ENCFF564NQY/@@download/ENCFF564NQY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF197NIF bed narrowPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF271EBY, ENCFF439WCI, ENCFF683TKC 3006532 ENCODE Processing Pipeline 813cd4cd2551a5420bd41777b6a89890 https://www.encodeproject.org/files/ENCFF197NIF/@@download/ENCFF197NIF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF670WAL bigBed narrowPeak peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF448EXB 6499603 ENCODE Processing Pipeline d28953bf612dac2ae301c3e1ce275759 https://www.encodeproject.org/files/ENCFF670WAL/@@download/ENCFF670WAL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF179ABL bigWig signal p-value ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF439WCI, ENCFF645XPU, ENCFF683TKC 369119316 ENCODE Processing Pipeline 29cde03a5106b7e990f9e8ab35061c25 https://www.encodeproject.org/files/ENCFF179ABL/@@download/ENCFF179ABL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF118YSH bigWig signal p-value ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF271EBY, ENCFF439WCI, ENCFF683TKC 444579648 ENCODE Processing Pipeline 871107cb7231ed5703ecf755d070fb40 https://www.encodeproject.org/files/ENCFF118YSH/@@download/ENCFF118YSH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF202RDN bigWig signal p-value ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF271EBY, ENCFF439WCI, ENCFF645XPU, ENCFF683TKC 491626936 ENCODE Processing Pipeline 3baddff2e57d73ee5f953fa1bf2ae3b6 https://www.encodeproject.org/files/ENCFF202RDN/@@download/ENCFF202RDN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF550UOQ bigWig fold change over control ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF439WCI, ENCFF645XPU, ENCFF683TKC 292638554 ENCODE Processing Pipeline ff70ca17ddc3c8b34a28884a9d88bc22 https://www.encodeproject.org/files/ENCFF550UOQ/@@download/ENCFF550UOQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF769VBL bigWig fold change over control ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF271EBY, ENCFF439WCI, ENCFF683TKC 339752469 ENCODE Processing Pipeline e554ab84d2cab60f6ff74517144a4069 https://www.encodeproject.org/files/ENCFF769VBL/@@download/ENCFF769VBL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF109YST bigWig fold change over control ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF271EBY, ENCFF439WCI, ENCFF645XPU, ENCFF683TKC 531935958 ENCODE Processing Pipeline 8247b4efc6ad0aa31f3992295c1225cd https://www.encodeproject.org/files/ENCFF109YST/@@download/ENCFF109YST.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF299BTW bed narrowPeak replicated peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF197NIF, ENCFF448EXB, ENCFF924AAY 2803134 ENCODE Processing Pipeline 5fef6ea642728d57cb44b6eea7ee5257 https://www.encodeproject.org/files/ENCFF299BTW/@@download/ENCFF299BTW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF825AWK bigBed narrowPeak replicated peaks ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF299BTW 5088288 ENCODE Processing Pipeline 8e3022e51c3fbf953134c2a939024c3f https://www.encodeproject.org/files/ENCFF825AWK/@@download/ENCFF825AWK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF002BUQ fastq reads ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 2 36 single-ended 584093424 Bing Ren, UCSD 6e134b3f66007a069a0fdf3119c1adfa SRA:SRR3652637 https://www.encodeproject.org/files/ENCFF002BUQ/@@download/ENCFF002BUQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQZ/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF002BUZ fastq reads ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 2 36 single-ended 599095079 Bing Ren, UCSD fc8d93c6cbd44d354bf8115e419dc5a0 SRA:SRR3652639 https://www.encodeproject.org/files/ENCFF002BUZ/@@download/ENCFF002BUZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQV/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF002BUP fastq reads ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 665159127 Bing Ren, UCSD 6b66925cd582ee246d26b3e648cd31f6 SRA:SRR3652638 https://www.encodeproject.org/files/ENCFF002BUP/@@download/ENCFF002BUP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQZ/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF002BUU fastq reads ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 650751107 Bing Ren, UCSD 608ea89d88c9f67ad2b4ef6081221a00 SRA:SRR3652640 https://www.encodeproject.org/files/ENCFF002BUU/@@download/ENCFF002BUU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQV/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF074SNS bam alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BUU, ENCFF002BUZ, ENCFF806TVZ 687283714 ENCODE Processing Pipeline 3f7a6fa7471438eea0f6839fd723d205 https://www.encodeproject.org/files/ENCFF074SNS/@@download/ENCFF074SNS.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF571HOX bam alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BUP, ENCFF002BUQ, ENCFF806TVZ 608650365 ENCODE Processing Pipeline eb97970aeb06de9fb796e91a7edab9bd https://www.encodeproject.org/files/ENCFF571HOX/@@download/ENCFF571HOX.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF790CAU bed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF571HOX 1897169 ENCODE Processing Pipeline 5e4676418021cb7d47e8f5fc8a8b6684 https://www.encodeproject.org/files/ENCFF790CAU/@@download/ENCFF790CAU.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF005EVH bed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF074SNS, ENCFF238GCZ, ENCFF571HOX, ENCFF967HVB 2002153 ENCODE Processing Pipeline 3e9d177133296d928785e3a927801f89 https://www.encodeproject.org/files/ENCFF005EVH/@@download/ENCFF005EVH.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF252GMM bed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF074SNS, ENCFF967HVB 1363747 ENCODE Processing Pipeline 857c668b98f0f28c9633725b784e8230 https://www.encodeproject.org/files/ENCFF252GMM/@@download/ENCFF252GMM.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF655QNQ bigBed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005EVH 4119513 ENCODE Processing Pipeline 8759101457de84fa36a5d886ababb624 https://www.encodeproject.org/files/ENCFF655QNQ/@@download/ENCFF655QNQ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF034RIS bigBed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF790CAU 4145681 ENCODE Processing Pipeline 46a96807c244a4ee4b4f39c437eb23d5 https://www.encodeproject.org/files/ENCFF034RIS/@@download/ENCFF034RIS.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF887BGF bigWig signal p-value ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF571HOX 356661518 ENCODE Processing Pipeline 539b86b2264d522c5021d5ff01ffe1b0 https://www.encodeproject.org/files/ENCFF887BGF/@@download/ENCFF887BGF.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF999VKB bigBed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF252GMM 3048717 ENCODE Processing Pipeline ed721f321e10c1101df74e447e2ebd23 https://www.encodeproject.org/files/ENCFF999VKB/@@download/ENCFF999VKB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF746SEU bigWig signal p-value ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF074SNS, ENCFF967HVB 299819954 ENCODE Processing Pipeline 674fc982f38181fcd9577d87a16ff11c https://www.encodeproject.org/files/ENCFF746SEU/@@download/ENCFF746SEU.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF653FXD bigWig signal p-value ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF074SNS, ENCFF238GCZ, ENCFF571HOX, ENCFF967HVB 445418633 ENCODE Processing Pipeline 49aea1fccee43aac0ecbae1422235312 https://www.encodeproject.org/files/ENCFF653FXD/@@download/ENCFF653FXD.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF084OGA bigWig fold change over control ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF571HOX 264552083 ENCODE Processing Pipeline 4dbfce6e2a3db69be5f3b1b2bea39b38 https://www.encodeproject.org/files/ENCFF084OGA/@@download/ENCFF084OGA.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF096VSQ bigWig fold change over control ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF074SNS, ENCFF967HVB 281227862 ENCODE Processing Pipeline dc0b3812f82ea8f02194ee952c53c177 https://www.encodeproject.org/files/ENCFF096VSQ/@@download/ENCFF096VSQ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF565TKW bigWig fold change over control ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF074SNS, ENCFF238GCZ, ENCFF571HOX, ENCFF967HVB 531004110 ENCODE Processing Pipeline 0784d611df94c0e56eec4ba78ee0954f https://www.encodeproject.org/files/ENCFF565TKW/@@download/ENCFF565TKW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF437FDZ bed narrowPeak replicated peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005EVH, ENCFF252GMM, ENCFF790CAU 1002363 ENCODE Processing Pipeline 446c7a6f70125d2c628ed75a8b5ba227 https://www.encodeproject.org/files/ENCFF437FDZ/@@download/ENCFF437FDZ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF739HJQ bigBed narrowPeak replicated peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437FDZ 2344836 ENCODE Processing Pipeline 18c5a6077abe49dc76a32943f73e99e0 https://www.encodeproject.org/files/ENCFF739HJQ/@@download/ENCFF739HJQ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF852GQP bam unfiltered alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUP, ENCFF002BUQ, ENCFF018NEO 1479091520 ENCODE Processing Pipeline d2ecee577361d489e35595140f5880fa https://www.encodeproject.org/files/ENCFF852GQP/@@download/ENCFF852GQP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF476IZT bam unfiltered alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BUU, ENCFF002BUZ, ENCFF018NEO 1497960544 ENCODE Processing Pipeline 1fd71c52a820487bd2ef1e555e607540 https://www.encodeproject.org/files/ENCFF476IZT/@@download/ENCFF476IZT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF005SOY bam alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BUU, ENCFF002BUZ, ENCFF018NEO 687079506 ENCODE Processing Pipeline 3620d51fa9320cca2b803482764ac4c6 https://www.encodeproject.org/files/ENCFF005SOY/@@download/ENCFF005SOY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF751EWM bam alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUP, ENCFF002BUQ, ENCFF018NEO 608468030 ENCODE Processing Pipeline bea15e8901683803bc3c84ca938b338e https://www.encodeproject.org/files/ENCFF751EWM/@@download/ENCFF751EWM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF660XDP bed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF751EWM 1866443 ENCODE Processing Pipeline 70ae9d50f33924eadeb966c4385a9cdc https://www.encodeproject.org/files/ENCFF660XDP/@@download/ENCFF660XDP.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF540KOQ bed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF005SOY, ENCFF858PPY 1364610 ENCODE Processing Pipeline 9f64c38e4c33b9006b0e6840caf45b90 https://www.encodeproject.org/files/ENCFF540KOQ/@@download/ENCFF540KOQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF288REP bed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005SOY, ENCFF507BQX, ENCFF751EWM, ENCFF858PPY 2004337 ENCODE Processing Pipeline 940f8be56c3ed9764fb200a0a44bba33 https://www.encodeproject.org/files/ENCFF288REP/@@download/ENCFF288REP.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF624JSC bigBed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF660XDP 4114520 ENCODE Processing Pipeline f72b379a9cde09e39de07706235ab599 https://www.encodeproject.org/files/ENCFF624JSC/@@download/ENCFF624JSC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF182KVU bigBed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF540KOQ 3064997 ENCODE Processing Pipeline b256dd74d803eda4394f75cf44f61ad8 https://www.encodeproject.org/files/ENCFF182KVU/@@download/ENCFF182KVU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF264GJX bigBed narrowPeak peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF288REP 4202221 ENCODE Processing Pipeline f99fc67abc9bc0049274990ed047feaa https://www.encodeproject.org/files/ENCFF264GJX/@@download/ENCFF264GJX.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF349IDR bigWig signal p-value ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF751EWM 371507757 ENCODE Processing Pipeline 30f0edd568fcd1e8d4a45be5633d9ba9 https://www.encodeproject.org/files/ENCFF349IDR/@@download/ENCFF349IDR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF047FUS bigWig signal p-value ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF005SOY, ENCFF858PPY 328425464 ENCODE Processing Pipeline b1af837cbe11d5237859673ee0b4c4f1 https://www.encodeproject.org/files/ENCFF047FUS/@@download/ENCFF047FUS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF329JZX bigWig signal p-value ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005SOY, ENCFF507BQX, ENCFF751EWM, ENCFF858PPY 553301539 ENCODE Processing Pipeline 3c07a1180113c3fc907b4059d6834176 https://www.encodeproject.org/files/ENCFF329JZX/@@download/ENCFF329JZX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF635FRS bigWig fold change over control ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF751EWM 267001083 ENCODE Processing Pipeline c1c2887ad1a30c2e67713e34a5bf8913 https://www.encodeproject.org/files/ENCFF635FRS/@@download/ENCFF635FRS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF192UWS bigWig fold change over control ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF005SOY, ENCFF858PPY 277041168 ENCODE Processing Pipeline a82d981a8ab160dbc4b30e5f3f7fcba5 https://www.encodeproject.org/files/ENCFF192UWS/@@download/ENCFF192UWS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF512TCI bigWig fold change over control ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF005SOY, ENCFF507BQX, ENCFF751EWM, ENCFF858PPY 604054835 ENCODE Processing Pipeline e5035be91823ee879bf0e4cb2fc984ce https://www.encodeproject.org/files/ENCFF512TCI/@@download/ENCFF512TCI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF720NTZ bed narrowPeak replicated peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF288REP, ENCFF540KOQ, ENCFF660XDP 1044787 ENCODE Processing Pipeline 70b0bade050d10b7d37f5bb127d8ab05 https://www.encodeproject.org/files/ENCFF720NTZ/@@download/ENCFF720NTZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF676ZOY bigBed narrowPeak replicated peaks ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF720NTZ 2397265 ENCODE Processing Pipeline 079985c1023d18426a98dbf7393c9850 https://www.encodeproject.org/files/ENCFF676ZOY/@@download/ENCFF676ZOY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF001JZH bam alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001JZV 1505703172 Bing Ren, UCSD 5dea2ddccbf79cd79b0cb614eee1cbd3 https://www.encodeproject.org/files/ENCFF001JZH/@@download/ENCFF001JZH.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001JZI bigBed broadPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWB 220356 Bing Ren, UCSD 0f941afa4cf219a9ccf64924a470885f https://www.encodeproject.org/files/ENCFF001JZI/@@download/ENCFF001JZI.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001JZJ bam alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001JZW 1370982577 Bing Ren, UCSD fdbef9d08de814d88134e030d84f9c39 https://www.encodeproject.org/files/ENCFF001JZJ/@@download/ENCFF001JZJ.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001JZN bigWig signal ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001JZH, ENCFF001JZJ 88351019 Bing Ren, UCSD 7a4074af97f01d45ecfb1e4a3eedbc39 https://www.encodeproject.org/files/ENCFF001JZN/@@download/ENCFF001JZN.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001JZV fastq reads ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1481490249 Bing Ren, UCSD cd1441a146d639d9fdf371b7d73f12ca https://www.encodeproject.org/files/ENCFF001JZV/@@download/ENCFF001JZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KAM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001JZW fastq reads ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1371088353 Bing Ren, UCSD dcb4707b0c481b1d76f096db73c7100d https://www.encodeproject.org/files/ENCFF001JZW/@@download/ENCFF001JZW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KAK/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XWB bed broadPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001JZH, ENCFF001JZJ 104325 Bing Ren, UCSD d56694dc3ca05e8201731ead5e0140dd https://www.encodeproject.org/files/ENCFF001XWB/@@download/ENCFF001XWB.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF979HVK bam unfiltered alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JZW, ENCFF018NEO 1470661278 ENCODE Processing Pipeline d838d934dddfc827134ec6c5951f0090 https://www.encodeproject.org/files/ENCFF979HVK/@@download/ENCFF979HVK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF237LVT bam unfiltered alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JZV, ENCFF018NEO 1650660043 ENCODE Processing Pipeline a8a161a7ed841e92000f16583b045b75 https://www.encodeproject.org/files/ENCFF237LVT/@@download/ENCFF237LVT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF787ZVR bam alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JZW, ENCFF018NEO 621290758 ENCODE Processing Pipeline a179e3470643b5567f6b5de6ecdbb342 https://www.encodeproject.org/files/ENCFF787ZVR/@@download/ENCFF787ZVR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF022DLJ bam alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JZV, ENCFF018NEO 804791615 ENCODE Processing Pipeline a9bffc251444bf01e54d25c46b92af51 https://www.encodeproject.org/files/ENCFF022DLJ/@@download/ENCFF022DLJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF807YRZ bed narrowPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF787ZVR 1764330 ENCODE Processing Pipeline cbf0928d05ac7ac822fffa7a8b742ccb https://www.encodeproject.org/files/ENCFF807YRZ/@@download/ENCFF807YRZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF003ZML bed narrowPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF022DLJ, ENCFF111GKZ, ENCFF389ARL, ENCFF787ZVR 179291 ENCODE Processing Pipeline 326e955c76485f33feeae7e925c585a5 https://www.encodeproject.org/files/ENCFF003ZML/@@download/ENCFF003ZML.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF044FSX bed narrowPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF022DLJ, ENCFF111GKZ, ENCFF389ARL 447047 ENCODE Processing Pipeline 7c9827c46dcea97011a97b9f355610fd https://www.encodeproject.org/files/ENCFF044FSX/@@download/ENCFF044FSX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF711OCS bigBed narrowPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF044FSX 803020 ENCODE Processing Pipeline a4568f02443468928b7592291d2e77b4 https://www.encodeproject.org/files/ENCFF711OCS/@@download/ENCFF711OCS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF907FJO bigBed narrowPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF003ZML 567405 ENCODE Processing Pipeline 9dfb04e06a7a71283a0937ad64bb6628 https://www.encodeproject.org/files/ENCFF907FJO/@@download/ENCFF907FJO.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF020GEN bigBed narrowPeak peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF807YRZ 3646514 ENCODE Processing Pipeline 0fe14afeb6b3bfaa3412e030f0f4ee82 https://www.encodeproject.org/files/ENCFF020GEN/@@download/ENCFF020GEN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF353UNS bigWig signal p-value ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF022DLJ, ENCFF111GKZ, ENCFF389ARL 337568690 ENCODE Processing Pipeline 798bfc3095cff8e65642a075da90dce2 https://www.encodeproject.org/files/ENCFF353UNS/@@download/ENCFF353UNS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF470JFM bigWig signal p-value ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF022DLJ, ENCFF111GKZ, ENCFF389ARL, ENCFF787ZVR 374100468 ENCODE Processing Pipeline 5116fc69c7ae1436d652fdd2c1e3fe03 https://www.encodeproject.org/files/ENCFF470JFM/@@download/ENCFF470JFM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF432WLO bigWig signal p-value ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF787ZVR 289680172 ENCODE Processing Pipeline 19e31e906d821ab6f1db5d86be8dd996 https://www.encodeproject.org/files/ENCFF432WLO/@@download/ENCFF432WLO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF534OGS bigWig fold change over control ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF022DLJ, ENCFF111GKZ, ENCFF389ARL 315228563 ENCODE Processing Pipeline 8c333971312bd86a8201d4b9eb153337 https://www.encodeproject.org/files/ENCFF534OGS/@@download/ENCFF534OGS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF995SQM bigWig fold change over control ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF787ZVR 250699065 ENCODE Processing Pipeline e19792cba6d6a3b580a1e8b36cac96f2 https://www.encodeproject.org/files/ENCFF995SQM/@@download/ENCFF995SQM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF614WMD bigWig fold change over control ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF022DLJ, ENCFF111GKZ, ENCFF389ARL, ENCFF787ZVR 470826286 ENCODE Processing Pipeline 1f1637e350d5e253d50db54ff7bdf3ea https://www.encodeproject.org/files/ENCFF614WMD/@@download/ENCFF614WMD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF112CIF bed narrowPeak replicated peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF003ZML, ENCFF044FSX, ENCFF807YRZ 124878 ENCODE Processing Pipeline 82a41013316c5b0d9a746f0a8a37589c https://www.encodeproject.org/files/ENCFF112CIF/@@download/ENCFF112CIF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF537PKC bigBed narrowPeak replicated peaks ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF112CIF 392057 ENCODE Processing Pipeline 7703721cb31f953e75d5ffdfcc4750a6 https://www.encodeproject.org/files/ENCFF537PKC/@@download/ENCFF537PKC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF002AHD fastq reads ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1012600256 Bing Ren, UCSD 03af78f4ad35ed2127d314b808085cc8 SRA:SRR3651209 https://www.encodeproject.org/files/ENCFF002AHD/@@download/ENCFF002AHD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARC/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AHH fastq reads ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1199413274 Bing Ren, UCSD 6e540d8cd4bbcdcfc5fa6ace3a4b4449 SRA:SRR3651208 https://www.encodeproject.org/files/ENCFF002AHH/@@download/ENCFF002AHH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARH/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF821PNL bam alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHH, ENCFF806TVZ 893178068 ENCODE Processing Pipeline b386105505b92ef12e8ac34f2c07972e https://www.encodeproject.org/files/ENCFF821PNL/@@download/ENCFF821PNL.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF003AGA fastq reads ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 249021822 Bing Ren, UCSD ef4c429e5a74c45ee4866e9b44086f8b SRA:SRR3651210 https://www.encodeproject.org/files/ENCFF003AGA/@@download/ENCFF003AGA.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARC/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF315FEV bam alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHD, ENCFF003AGA, ENCFF806TVZ 1050109509 ENCODE Processing Pipeline eb1b774867c1d82e7157e16ce9e1c38d https://www.encodeproject.org/files/ENCFF315FEV/@@download/ENCFF315FEV.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF358UZL bed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF821PNL, ENCFF989KGL 590631 ENCODE Processing Pipeline 53a969d0c2be3adefba35646051636dc https://www.encodeproject.org/files/ENCFF358UZL/@@download/ENCFF358UZL.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF874MOC bigBed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF358UZL 1222170 ENCODE Processing Pipeline d60f4d28b17e8cd94dad01aa92d3ad80 https://www.encodeproject.org/files/ENCFF874MOC/@@download/ENCFF874MOC.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF463OBP bigBed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF958UTT 1312407 ENCODE Processing Pipeline 705ac5bd48b4d54030ab3e765c2b71a0 https://www.encodeproject.org/files/ENCFF463OBP/@@download/ENCFF463OBP.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF958UTT bed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF315FEV, ENCFF989KGL 571345 ENCODE Processing Pipeline 42ad2a52f1b8a2bad2d0ebe02462a752 https://www.encodeproject.org/files/ENCFF958UTT/@@download/ENCFF958UTT.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF507KVA bed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF315FEV, ENCFF821PNL, ENCFF989KGL 708328 ENCODE Processing Pipeline b207558e727bc33b16f8ce5369836576 https://www.encodeproject.org/files/ENCFF507KVA/@@download/ENCFF507KVA.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF383LOP bigBed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF507KVA 1599037 ENCODE Processing Pipeline d757f01f6bfcd3ce787cb89591af6df6 https://www.encodeproject.org/files/ENCFF383LOP/@@download/ENCFF383LOP.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF165YZS bigWig signal p-value ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF821PNL, ENCFF989KGL 463467101 ENCODE Processing Pipeline f201f6cef69afdb2224ea53883590af4 https://www.encodeproject.org/files/ENCFF165YZS/@@download/ENCFF165YZS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF682JQL bigWig signal p-value ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF315FEV, ENCFF989KGL 447040007 ENCODE Processing Pipeline f099aa2486892874423834fe7bcb6c4a https://www.encodeproject.org/files/ENCFF682JQL/@@download/ENCFF682JQL.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF867HLX bigWig fold change over control ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF315FEV, ENCFF989KGL 520756598 ENCODE Processing Pipeline b4dd75a3d17ec64843f416b6d1a28662 https://www.encodeproject.org/files/ENCFF867HLX/@@download/ENCFF867HLX.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF418JUH bigWig signal p-value ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF315FEV, ENCFF821PNL, ENCFF989KGL 546332768 ENCODE Processing Pipeline f3798e363402880cc710220d535385bc https://www.encodeproject.org/files/ENCFF418JUH/@@download/ENCFF418JUH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF860WHS bigWig fold change over control ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF821PNL, ENCFF989KGL 491762357 ENCODE Processing Pipeline d01655b16d0f19fc08b47f72294c9a65 https://www.encodeproject.org/files/ENCFF860WHS/@@download/ENCFF860WHS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF640PTB bed narrowPeak replicated peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF358UZL, ENCFF507KVA, ENCFF958UTT 226750 ENCODE Processing Pipeline 105c23d1e620214a921ad345938d8c4c https://www.encodeproject.org/files/ENCFF640PTB/@@download/ENCFF640PTB.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF269CWT bigWig fold change over control ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF315FEV, ENCFF821PNL, ENCFF989KGL 777256862 ENCODE Processing Pipeline 5d80c5ebc407b31f279434125278e50e https://www.encodeproject.org/files/ENCFF269CWT/@@download/ENCFF269CWT.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF742HPB bigBed narrowPeak replicated peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF640PTB 627279 ENCODE Processing Pipeline 9b81321fd792555d03252a40d1483ccd https://www.encodeproject.org/files/ENCFF742HPB/@@download/ENCFF742HPB.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF948OND bam unfiltered alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHH, ENCFF018NEO 1320096657 ENCODE Processing Pipeline 7987166217edf58ed7ea2599c5a764e5 https://www.encodeproject.org/files/ENCFF948OND/@@download/ENCFF948OND.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF976JIR bam unfiltered alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHD, ENCFF003AGA, ENCFF018NEO 1392636738 ENCODE Processing Pipeline fe5d9564e912307ad29ee2bfd0760b3f https://www.encodeproject.org/files/ENCFF976JIR/@@download/ENCFF976JIR.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF205RXI bam alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHD, ENCFF003AGA, ENCFF018NEO 980950333 ENCODE Processing Pipeline c3698efe428a405dca5c8841b9fae64a https://www.encodeproject.org/files/ENCFF205RXI/@@download/ENCFF205RXI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF503USJ bam alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHH, ENCFF018NEO 892918858 ENCODE Processing Pipeline 3a9f9f130a52b1c1d05d54f650ba1ce1 https://www.encodeproject.org/files/ENCFF503USJ/@@download/ENCFF503USJ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF873ZSM bed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF205RXI, ENCFF782YCY, ENCFF922FWV 544834 ENCODE Processing Pipeline 40acefde25466b4419f53945bb1cfa56 https://www.encodeproject.org/files/ENCFF873ZSM/@@download/ENCFF873ZSM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF096PCY bed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF503USJ, ENCFF782YCY, ENCFF922FWV 536285 ENCODE Processing Pipeline 73d1b4cdc26dcac403b3c64d44cb3369 https://www.encodeproject.org/files/ENCFF096PCY/@@download/ENCFF096PCY.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF844FHQ bed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF205RXI, ENCFF503USJ, ENCFF782YCY, ENCFF922FWV 534739 ENCODE Processing Pipeline 558e461df117f16c51dc6ad6a1e6c44c https://www.encodeproject.org/files/ENCFF844FHQ/@@download/ENCFF844FHQ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF144MZF bigBed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF873ZSM 1259471 ENCODE Processing Pipeline 8df5dd2a3d9620058be01e4b9f90f453 https://www.encodeproject.org/files/ENCFF144MZF/@@download/ENCFF144MZF.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF826TTA bigBed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF096PCY 1135294 ENCODE Processing Pipeline 424bfc2bddab61440d0401cac2262ac2 https://www.encodeproject.org/files/ENCFF826TTA/@@download/ENCFF826TTA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF875LUM bigBed narrowPeak peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF844FHQ 1214640 ENCODE Processing Pipeline 8d66ad06563005d309c60d361abe0462 https://www.encodeproject.org/files/ENCFF875LUM/@@download/ENCFF875LUM.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF497GEO bigWig signal p-value ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF205RXI, ENCFF782YCY, ENCFF922FWV 531003472 ENCODE Processing Pipeline c454f366afcf317c96dbd333e7ca2242 https://www.encodeproject.org/files/ENCFF497GEO/@@download/ENCFF497GEO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF015UVI bigWig signal p-value ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF503USJ, ENCFF782YCY, ENCFF922FWV 598810957 ENCODE Processing Pipeline 8a33018a4fc8c550dbfeac66b0541688 https://www.encodeproject.org/files/ENCFF015UVI/@@download/ENCFF015UVI.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF434YOG bigWig signal p-value ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF205RXI, ENCFF503USJ, ENCFF782YCY, ENCFF922FWV 691987431 ENCODE Processing Pipeline ac261f60112f5358bfb282eb1cd015d5 https://www.encodeproject.org/files/ENCFF434YOG/@@download/ENCFF434YOG.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF075GGE bigWig fold change over control ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF205RXI, ENCFF782YCY, ENCFF922FWV 571257240 ENCODE Processing Pipeline 1370e9541b59a8623c6bbfd803805f3e https://www.encodeproject.org/files/ENCFF075GGE/@@download/ENCFF075GGE.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF925KER bigWig fold change over control ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF503USJ, ENCFF782YCY, ENCFF922FWV 528887732 ENCODE Processing Pipeline 1f494c0c4bf0cedf53eb4b185e238dc8 https://www.encodeproject.org/files/ENCFF925KER/@@download/ENCFF925KER.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF210YRR bigWig fold change over control ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF205RXI, ENCFF503USJ, ENCFF782YCY, ENCFF922FWV 797420964 ENCODE Processing Pipeline 008eb3f6785564b36464be22ed7715d6 https://www.encodeproject.org/files/ENCFF210YRR/@@download/ENCFF210YRR.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF224PYA bed narrowPeak replicated peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF096PCY, ENCFF844FHQ, ENCFF873ZSM 207750 ENCODE Processing Pipeline aa0222a0d57cc3e9fd27cb3aa09162b9 https://www.encodeproject.org/files/ENCFF224PYA/@@download/ENCFF224PYA.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF346BUY bigBed narrowPeak replicated peaks ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PYA 580918 ENCODE Processing Pipeline e3959c833bd4d983ff08729fbc299b04 https://www.encodeproject.org/files/ENCFF346BUY/@@download/ENCFF346BUY.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF320FGK fastq reads ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1773149603 Bing Ren, UCSD c82539a2d34d1509c96c7ff42f54724a SRA:SRR3652515 https://www.encodeproject.org/files/ENCFF320FGK/@@download/ENCFF320FGK.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released mild to moderate bottlenecking, inconsistent platforms ENCFF867UGA fastq reads ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1999374394 Bing Ren, UCSD 6ab59d59123c6b0e593ef05a9f2600c1 SRA:SRR3652516 https://www.encodeproject.org/files/ENCFF867UGA/@@download/ENCFF867UGA.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released mild to moderate bottlenecking, inconsistent platforms ENCFF620TZT bam alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF320FGK, ENCFF806TVZ 1424945916 ENCODE Processing Pipeline 8e021705e800c29f0edb265a3571b19f https://www.encodeproject.org/files/ENCFF620TZT/@@download/ENCFF620TZT.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF308VVL bam alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF867UGA 1596104436 ENCODE Processing Pipeline c47727fd4671669c517fd1744a584621 https://www.encodeproject.org/files/ENCFF308VVL/@@download/ENCFF308VVL.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF076KMI bed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF308VVL, ENCFF582LOU 988210 ENCODE Processing Pipeline 422ca5b9830de7ecc1c6610cdcf57e76 https://www.encodeproject.org/files/ENCFF076KMI/@@download/ENCFF076KMI.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF632WFG bigBed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF076KMI 3018936 ENCODE Processing Pipeline 766abdb7283d3af253558304750d244d https://www.encodeproject.org/files/ENCFF632WFG/@@download/ENCFF632WFG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF441XJH bed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF620TZT 991969 ENCODE Processing Pipeline 7a384ff92465c05435f96521328db592 https://www.encodeproject.org/files/ENCFF441XJH/@@download/ENCFF441XJH.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF590HGP bed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF308VVL, ENCFF582LOU, ENCFF620TZT 1071976 ENCODE Processing Pipeline 0bd2dbfe82083587f592b0a3adc7126e https://www.encodeproject.org/files/ENCFF590HGP/@@download/ENCFF590HGP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF775XIY bigBed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF590HGP 3207159 ENCODE Processing Pipeline e9e10dcfae3f88068e57374175078144 https://www.encodeproject.org/files/ENCFF775XIY/@@download/ENCFF775XIY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF861BCB bigBed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF441XJH 3031921 ENCODE Processing Pipeline 60762a0a6fcbd5f99e4294d1a845d23e https://www.encodeproject.org/files/ENCFF861BCB/@@download/ENCFF861BCB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF964YBD bigWig signal p-value ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF308VVL, ENCFF582LOU 529309782 ENCODE Processing Pipeline 2c7a838a869df47f0f6877204e12288f https://www.encodeproject.org/files/ENCFF964YBD/@@download/ENCFF964YBD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF053ZFR bigWig signal p-value ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF620TZT 523450982 ENCODE Processing Pipeline f03a44e3bb024c6415ae41e57289c5f9 https://www.encodeproject.org/files/ENCFF053ZFR/@@download/ENCFF053ZFR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF759XVV bigWig signal p-value ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF308VVL, ENCFF582LOU, ENCFF620TZT 1100451011 ENCODE Processing Pipeline bdee9626510c209e32cc8ce59fb37b38 https://www.encodeproject.org/files/ENCFF759XVV/@@download/ENCFF759XVV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF732IUF bigWig fold change over control ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF308VVL, ENCFF582LOU 621242213 ENCODE Processing Pipeline 672f78d5d642b422b6348987de447ee6 https://www.encodeproject.org/files/ENCFF732IUF/@@download/ENCFF732IUF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF382XWM bigWig fold change over control ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF620TZT 535861581 ENCODE Processing Pipeline bd7d67506a347f61acb10e2eb74bcb18 https://www.encodeproject.org/files/ENCFF382XWM/@@download/ENCFF382XWM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF493AHK bigWig fold change over control ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245YVK, ENCFF308VVL, ENCFF582LOU, ENCFF620TZT 1111719146 ENCODE Processing Pipeline f54390809d8ec2193e349cdcf93225dc https://www.encodeproject.org/files/ENCFF493AHK/@@download/ENCFF493AHK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF165NBB bigBed narrowPeak replicated peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF514KAF 2448284 ENCODE Processing Pipeline df39489db741e11d519cd3b16bf46118 https://www.encodeproject.org/files/ENCFF165NBB/@@download/ENCFF165NBB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF514KAF bed narrowPeak replicated peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF076KMI, ENCFF441XJH, ENCFF590HGP 1102614 ENCODE Processing Pipeline a817215c196841d25f81b7d7fa23c144 https://www.encodeproject.org/files/ENCFF514KAF/@@download/ENCFF514KAF.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF758JCT bam unfiltered alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF320FGK 2069002122 ENCODE Processing Pipeline 9512c4d95e850a107d17ae5769ebfe2b https://www.encodeproject.org/files/ENCFF758JCT/@@download/ENCFF758JCT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF889RXS bam unfiltered alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF867UGA 2322518610 ENCODE Processing Pipeline a5dd6672af13407ad4f7b15539b5287c https://www.encodeproject.org/files/ENCFF889RXS/@@download/ENCFF889RXS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF639ZZX bam alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF320FGK 1424666427 ENCODE Processing Pipeline 6605a274bfb04f50f925b6569bdb68ee https://www.encodeproject.org/files/ENCFF639ZZX/@@download/ENCFF639ZZX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF152VCS bam alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF867UGA 1595747633 ENCODE Processing Pipeline 5f6d817883815924cd8f0758ef5bd614 https://www.encodeproject.org/files/ENCFF152VCS/@@download/ENCFF152VCS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF843IDZ bed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF152VCS, ENCFF245OIS 1001242 ENCODE Processing Pipeline e903e3b407a4b81b7d9095884a45dc25 https://www.encodeproject.org/files/ENCFF843IDZ/@@download/ENCFF843IDZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF953QDW bed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF639ZZX 998863 ENCODE Processing Pipeline 93a8f3f148e591cafa353c187a699461 https://www.encodeproject.org/files/ENCFF953QDW/@@download/ENCFF953QDW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF018RLB bed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF152VCS, ENCFF245OIS, ENCFF389YBT, ENCFF639ZZX 1088033 ENCODE Processing Pipeline ebd0ca17ed0dfc4eabb3cb8ac2f716ee https://www.encodeproject.org/files/ENCFF018RLB/@@download/ENCFF018RLB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF653HIS bigBed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF843IDZ 3057443 ENCODE Processing Pipeline 4ba4834c4cccbe03f28a759af3f798e5 https://www.encodeproject.org/files/ENCFF653HIS/@@download/ENCFF653HIS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF892ISA bigBed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF953QDW 3059117 ENCODE Processing Pipeline 9e64f893df244de4ee519b5c7e998476 https://www.encodeproject.org/files/ENCFF892ISA/@@download/ENCFF892ISA.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF905OPL bigBed narrowPeak peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018RLB 3239385 ENCODE Processing Pipeline e58c52a295718f059d86a976185ed9b3 https://www.encodeproject.org/files/ENCFF905OPL/@@download/ENCFF905OPL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF998WZD bigWig signal p-value ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF152VCS, ENCFF245OIS 658237947 ENCODE Processing Pipeline 769e5eea082bcb83ee2f2dc18a51479e https://www.encodeproject.org/files/ENCFF998WZD/@@download/ENCFF998WZD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF098ULY bigWig signal p-value ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF639ZZX 687980683 ENCODE Processing Pipeline b7fef84fd3682ab63c35bfa928a46bae https://www.encodeproject.org/files/ENCFF098ULY/@@download/ENCFF098ULY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF774APS bigWig signal p-value ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF152VCS, ENCFF245OIS, ENCFF389YBT, ENCFF639ZZX 832363390 ENCODE Processing Pipeline 16e53a1255f2f7b1663ae96c813eb0d7 https://www.encodeproject.org/files/ENCFF774APS/@@download/ENCFF774APS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF448FIB bigWig fold change over control ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF152VCS, ENCFF245OIS 637275144 ENCODE Processing Pipeline 8d41b080672626d3de1cb89e2a23e653 https://www.encodeproject.org/files/ENCFF448FIB/@@download/ENCFF448FIB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF729IZX bigWig fold change over control ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF639ZZX 600541695 ENCODE Processing Pipeline 60adce1164847dfe538981686cfa677b https://www.encodeproject.org/files/ENCFF729IZX/@@download/ENCFF729IZX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF296YDU bigWig fold change over control ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF152VCS, ENCFF245OIS, ENCFF389YBT, ENCFF639ZZX 1108953017 ENCODE Processing Pipeline dd36522489f0703fb3274d09f8bf613a https://www.encodeproject.org/files/ENCFF296YDU/@@download/ENCFF296YDU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF701RMC bed narrowPeak replicated peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018RLB, ENCFF843IDZ, ENCFF953QDW 1099490 ENCODE Processing Pipeline c4a1887f86cbe78a06fba4d83b958ada https://www.encodeproject.org/files/ENCFF701RMC/@@download/ENCFF701RMC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF345LFS bigBed narrowPeak replicated peaks ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF701RMC 2449211 ENCODE Processing Pipeline 2c1c3c3bc04353a2a5e6cead97036539 https://www.encodeproject.org/files/ENCFF345LFS/@@download/ENCFF345LFS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002BWV fastq reads ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1337363657 Bing Ren, UCSD 46d501bec69b0598771af71025a33521 SRA:SRR3652354 https://www.encodeproject.org/files/ENCFF002BWV/@@download/ENCFF002BWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYC/ released low read length ENCFF002BWO fastq reads ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1196275743 Bing Ren, UCSD cf4a5a66f5588818e1900a1983833f16 SRA:SRR3652353 https://www.encodeproject.org/files/ENCFF002BWO/@@download/ENCFF002BWO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYB/ released low read length ENCFF592ZLM bam alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWO, ENCFF806TVZ 1026122605 ENCODE Processing Pipeline 86cd4d59d18ab89a9e8c0f0cf25c70a2 https://www.encodeproject.org/files/ENCFF592ZLM/@@download/ENCFF592ZLM.bam mm10-minimal archived low read length ENCFF341JXI bam alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWV, ENCFF806TVZ 1172139460 ENCODE Processing Pipeline 39a3a416e02e96aa35e8198e522276bf https://www.encodeproject.org/files/ENCFF341JXI/@@download/ENCFF341JXI.bam mm10-minimal archived low read length ENCFF406SWR bed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF341JXI, ENCFF783YRC 2111378 ENCODE Processing Pipeline 7b93d42a2af174dd73dd67ea3eac10b0 https://www.encodeproject.org/files/ENCFF406SWR/@@download/ENCFF406SWR.bed.gz mm10-minimal archived low read length ENCFF271DEH bed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF592ZLM, ENCFF783YRC 1591438 ENCODE Processing Pipeline 6051e28f5f9f4cc685eae779e3afe6aa https://www.encodeproject.org/files/ENCFF271DEH/@@download/ENCFF271DEH.bed.gz mm10-minimal archived low read length ENCFF171JNL bed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF341JXI, ENCFF592ZLM, ENCFF783YRC 2004679 ENCODE Processing Pipeline eb52d4dfe09bd3a0e719eab711d6d06b https://www.encodeproject.org/files/ENCFF171JNL/@@download/ENCFF171JNL.bed.gz mm10-minimal archived low read length ENCFF058VAX bigBed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF271DEH 4581655 ENCODE Processing Pipeline 37d36f16ef1a66ef32f5af585398bebf https://www.encodeproject.org/files/ENCFF058VAX/@@download/ENCFF058VAX.bigBed mm10-minimal archived low read length ENCFF819QEA bigBed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF406SWR 5849301 ENCODE Processing Pipeline 4b4e352585c780aa01633d240f6c7d1d https://www.encodeproject.org/files/ENCFF819QEA/@@download/ENCFF819QEA.bigBed mm10-minimal archived low read length ENCFF255RVH bigBed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF171JNL 5538774 ENCODE Processing Pipeline 9e3283144cff06240318320094adac0d https://www.encodeproject.org/files/ENCFF255RVH/@@download/ENCFF255RVH.bigBed mm10-minimal archived low read length ENCFF962JOC bigWig signal p-value ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF341JXI, ENCFF592ZLM, ENCFF783YRC 900653781 ENCODE Processing Pipeline 982a93b7e59f0f7d97076d12727dafcb https://www.encodeproject.org/files/ENCFF962JOC/@@download/ENCFF962JOC.bigWig mm10-minimal archived low read length ENCFF775NID bigWig signal p-value ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF592ZLM, ENCFF783YRC 585175949 ENCODE Processing Pipeline 6a5fd64ee508bebc607c47816b4e0ffb https://www.encodeproject.org/files/ENCFF775NID/@@download/ENCFF775NID.bigWig mm10-minimal archived low read length ENCFF713WTN bigWig signal p-value ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF341JXI, ENCFF783YRC 649794361 ENCODE Processing Pipeline 6ef00c8b3fac615f57dafcedcf7c5f4b https://www.encodeproject.org/files/ENCFF713WTN/@@download/ENCFF713WTN.bigWig mm10-minimal archived low read length ENCFF907LGH bigWig fold change over control ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF341JXI, ENCFF783YRC 615871254 ENCODE Processing Pipeline 780514f39c134d7776570e0cca247965 https://www.encodeproject.org/files/ENCFF907LGH/@@download/ENCFF907LGH.bigWig mm10-minimal archived low read length ENCFF513LDJ bigWig fold change over control ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF592ZLM, ENCFF783YRC 579336018 ENCODE Processing Pipeline 01d30c04305e64a62725747484fbc264 https://www.encodeproject.org/files/ENCFF513LDJ/@@download/ENCFF513LDJ.bigWig mm10-minimal archived low read length ENCFF758CVZ bigWig fold change over control ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF341JXI, ENCFF592ZLM, ENCFF783YRC 915876380 ENCODE Processing Pipeline df0850e147af36da40cbf1ce5fb98e16 https://www.encodeproject.org/files/ENCFF758CVZ/@@download/ENCFF758CVZ.bigWig mm10-minimal archived low read length ENCFF649AYH bed narrowPeak replicated peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF171JNL, ENCFF271DEH, ENCFF406SWR 1816004 ENCODE Processing Pipeline 38e5fae6d374fe45e2884b33ee9d1a57 https://www.encodeproject.org/files/ENCFF649AYH/@@download/ENCFF649AYH.bed.gz mm10-minimal archived low read length ENCFF252GBO bigBed narrowPeak replicated peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF649AYH 3763670 ENCODE Processing Pipeline f1f4cd644447c1c0dc023b0e0a0ad4a0 https://www.encodeproject.org/files/ENCFF252GBO/@@download/ENCFF252GBO.bigBed mm10-minimal archived low read length ENCFF957IKU bam unfiltered alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWO, ENCFF018NEO 1531006347 ENCODE Processing Pipeline 8b52af8e6e280af31fdc3074369a6c09 https://www.encodeproject.org/files/ENCFF957IKU/@@download/ENCFF957IKU.bam mm10 released low read length ENCFF076SDA bam unfiltered alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWV, ENCFF018NEO 1688957953 ENCODE Processing Pipeline bb26b6c52b0ceaf89acf96eca9e382fb https://www.encodeproject.org/files/ENCFF076SDA/@@download/ENCFF076SDA.bam mm10 released low read length ENCFF753EXZ bam alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWO, ENCFF018NEO 1025857566 ENCODE Processing Pipeline c37ee16ba5516637cad5c17a51e1537d https://www.encodeproject.org/files/ENCFF753EXZ/@@download/ENCFF753EXZ.bam mm10 released low read length ENCFF078BRI bam alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWV, ENCFF018NEO 1171879184 ENCODE Processing Pipeline 94e8f7c920013302c3ff550de9d7f298 https://www.encodeproject.org/files/ENCFF078BRI/@@download/ENCFF078BRI.bam mm10 released low read length ENCFF559HOV bed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF753EXZ 1576906 ENCODE Processing Pipeline 3427f4454ac0fc60c21f700af9099391 https://www.encodeproject.org/files/ENCFF559HOV/@@download/ENCFF559HOV.bed.gz mm10 released low read length ENCFF922ASO bed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF078BRI 1800348 ENCODE Processing Pipeline ccfbc3e5e858beabfe58747e91c3f901 https://www.encodeproject.org/files/ENCFF922ASO/@@download/ENCFF922ASO.bed.gz mm10 released low read length ENCFF666VZL bed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF078BRI, ENCFF658UBJ, ENCFF753EXZ 2003936 ENCODE Processing Pipeline 572ef1030849688ed8f00222a5ada1f7 https://www.encodeproject.org/files/ENCFF666VZL/@@download/ENCFF666VZL.bed.gz mm10 released low read length ENCFF507RWA bigBed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF559HOV 4550112 ENCODE Processing Pipeline 4ca43c680eb63fc75516f89c2cfbe2bf https://www.encodeproject.org/files/ENCFF507RWA/@@download/ENCFF507RWA.bigBed mm10 released low read length ENCFF549AJL bigBed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF922ASO 5038967 ENCODE Processing Pipeline 88afbddc0bf56d0a0363fac8659596a2 https://www.encodeproject.org/files/ENCFF549AJL/@@download/ENCFF549AJL.bigBed mm10 released low read length ENCFF689GWL bigBed narrowPeak peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF666VZL 5538481 ENCODE Processing Pipeline e36c1ec1c4469903693d9438d3bf027c https://www.encodeproject.org/files/ENCFF689GWL/@@download/ENCFF689GWL.bigBed mm10 released low read length ENCFF800FTM bigWig signal p-value ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF753EXZ 680003041 ENCODE Processing Pipeline e2d184ee6f55a28efe287a534be34c49 https://www.encodeproject.org/files/ENCFF800FTM/@@download/ENCFF800FTM.bigWig mm10 released low read length ENCFF621JGA bigWig signal p-value ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF078BRI 479298646 ENCODE Processing Pipeline dda3e6a1775e4bba63f2011b631ae125 https://www.encodeproject.org/files/ENCFF621JGA/@@download/ENCFF621JGA.bigWig mm10 released low read length ENCFF548JCR bigWig signal p-value ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF078BRI, ENCFF658UBJ, ENCFF753EXZ 900658383 ENCODE Processing Pipeline 29cf5e3d83cf2c1c46cfa0d6bc1a5d91 https://www.encodeproject.org/files/ENCFF548JCR/@@download/ENCFF548JCR.bigWig mm10 released low read length ENCFF156GSR bigWig fold change over control ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF753EXZ 584710254 ENCODE Processing Pipeline 3b2dab454687eecc1a072e3800ad2cc4 https://www.encodeproject.org/files/ENCFF156GSR/@@download/ENCFF156GSR.bigWig mm10 released low read length ENCFF868JIK bigWig fold change over control ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF078BRI 470260740 ENCODE Processing Pipeline bad6368ac59a7e6061dc0432e8704e69 https://www.encodeproject.org/files/ENCFF868JIK/@@download/ENCFF868JIK.bigWig mm10 released low read length ENCFF069OMF bigWig fold change over control ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF078BRI, ENCFF658UBJ, ENCFF753EXZ 916326564 ENCODE Processing Pipeline 0005cb32b783d4218476e8562189bb32 https://www.encodeproject.org/files/ENCFF069OMF/@@download/ENCFF069OMF.bigWig mm10 released low read length ENCFF223IHN bed narrowPeak replicated peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF559HOV, ENCFF666VZL, ENCFF922ASO 1805030 ENCODE Processing Pipeline 027cabd40310cf954690338b304836c4 https://www.encodeproject.org/files/ENCFF223IHN/@@download/ENCFF223IHN.bed.gz mm10 released low read length ENCFF727FNB bigBed narrowPeak replicated peaks ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF223IHN 3752571 ENCODE Processing Pipeline 384bb2d5aff704e00b110c3047e69da5 https://www.encodeproject.org/files/ENCFF727FNB/@@download/ENCFF727FNB.bigBed mm10 released low read length ENCFF002AOD fastq reads ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1329870972 Bing Ren, UCSD 654b258a5fdcf7be2d051c9572f60baa SRA:SRR3652437 https://www.encodeproject.org/files/ENCFF002AOD/@@download/ENCFF002AOD.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQE/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AOE fastq reads ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1395644201 Bing Ren, UCSD badbe98f4dfe5020dd36c238108e7406 SRA:SRR3652438 https://www.encodeproject.org/files/ENCFF002AOE/@@download/ENCFF002AOE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQC/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF465QMY bam alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOE, ENCFF806TVZ 957909880 ENCODE Processing Pipeline cc6441be06bbe4ce566f07c7b4a45baf https://www.encodeproject.org/files/ENCFF465QMY/@@download/ENCFF465QMY.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF433IUV bam alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOD, ENCFF806TVZ 596065478 ENCODE Processing Pipeline ee511dcb587eb9e018744150a322d737 https://www.encodeproject.org/files/ENCFF433IUV/@@download/ENCFF433IUV.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF789OKG bed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF433IUV, ENCFF999TAG 1406909 ENCODE Processing Pipeline 287d564e0899618574785eb915a77268 https://www.encodeproject.org/files/ENCFF789OKG/@@download/ENCFF789OKG.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF926TKA bigBed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF214JAN 2326268 ENCODE Processing Pipeline 04b8de60cf6699d98cb7d3c7faec992a https://www.encodeproject.org/files/ENCFF926TKA/@@download/ENCFF926TKA.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF214JAN bed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF465QMY, ENCFF999TAG 962525 ENCODE Processing Pipeline cf2644e26440f5d2f56f6a13b6e035d7 https://www.encodeproject.org/files/ENCFF214JAN/@@download/ENCFF214JAN.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF319WBE bed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF433IUV, ENCFF465QMY, ENCFF999TAG 1170817 ENCODE Processing Pipeline b70f041adf6ec133ffde27e4d949a36c https://www.encodeproject.org/files/ENCFF319WBE/@@download/ENCFF319WBE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF168LVB bigBed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF789OKG 2771483 ENCODE Processing Pipeline d9d2480f0171e2bb26464078596b1296 https://www.encodeproject.org/files/ENCFF168LVB/@@download/ENCFF168LVB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF599FZO bigBed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF319WBE 2758157 ENCODE Processing Pipeline 22c4ceae1aed1699fd85d7f85672820e https://www.encodeproject.org/files/ENCFF599FZO/@@download/ENCFF599FZO.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF768APU bigWig signal p-value ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF433IUV, ENCFF999TAG 391360826 ENCODE Processing Pipeline 7a451a7f80292f498ee88235a6775296 https://www.encodeproject.org/files/ENCFF768APU/@@download/ENCFF768APU.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF923SVG bigWig signal p-value ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF465QMY, ENCFF999TAG 401086325 ENCODE Processing Pipeline 33a99a0bdd33a03dc01bf565bd99358e https://www.encodeproject.org/files/ENCFF923SVG/@@download/ENCFF923SVG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF238LIS bigWig signal p-value ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF433IUV, ENCFF465QMY, ENCFF999TAG 547014394 ENCODE Processing Pipeline 12bd8ba71d8251bbaa212bd65fe429ad https://www.encodeproject.org/files/ENCFF238LIS/@@download/ENCFF238LIS.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF108YEL bigWig fold change over control ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF465QMY, ENCFF999TAG 434120239 ENCODE Processing Pipeline 4c2eb51ce50e3ec23eac2c1db3543900 https://www.encodeproject.org/files/ENCFF108YEL/@@download/ENCFF108YEL.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF126PAF bigWig fold change over control ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF433IUV, ENCFF999TAG 305699695 ENCODE Processing Pipeline 3077813ed3d5aad8d383d011298bce2d https://www.encodeproject.org/files/ENCFF126PAF/@@download/ENCFF126PAF.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF389VIW bigWig fold change over control ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF433IUV, ENCFF465QMY, ENCFF999TAG 617120697 ENCODE Processing Pipeline 32fcfc0329003749f4bc96261c41a621 https://www.encodeproject.org/files/ENCFF389VIW/@@download/ENCFF389VIW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF618LXD bigBed narrowPeak replicated peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF707CUE 1766207 ENCODE Processing Pipeline 95a87487d2b632ac6b271e5862dca62e https://www.encodeproject.org/files/ENCFF618LXD/@@download/ENCFF618LXD.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF707CUE bed narrowPeak replicated peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF214JAN, ENCFF319WBE, ENCFF789OKG 704334 ENCODE Processing Pipeline 3053cbd3c3ec6b7494d6891b63459d5a https://www.encodeproject.org/files/ENCFF707CUE/@@download/ENCFF707CUE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF503FZE bam unfiltered alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOD, ENCFF018NEO 1340219682 ENCODE Processing Pipeline d460e32ee5bbae40845ddab7cb8988ac https://www.encodeproject.org/files/ENCFF503FZE/@@download/ENCFF503FZE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF083YAZ bam alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOD, ENCFF018NEO 595863653 ENCODE Processing Pipeline 444abc7ad949dc24e3f509568b20788f https://www.encodeproject.org/files/ENCFF083YAZ/@@download/ENCFF083YAZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF914BIS bam unfiltered alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOE, ENCFF018NEO 1469578778 ENCODE Processing Pipeline d30c986909b2bf9347e0cbcc9cee57c0 https://www.encodeproject.org/files/ENCFF914BIS/@@download/ENCFF914BIS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF542RYU bam alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOE, ENCFF018NEO 957728953 ENCODE Processing Pipeline e258d47001a4b11e85877e77daf1c789 https://www.encodeproject.org/files/ENCFF542RYU/@@download/ENCFF542RYU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF494CBP bigBed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF632FLH 2670858 ENCODE Processing Pipeline aed43105494ec10ad66869fcc3973ce2 https://www.encodeproject.org/files/ENCFF494CBP/@@download/ENCFF494CBP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF417HVG bed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF542RYU 960188 ENCODE Processing Pipeline 418a62f881f1cf8b4289349f096a0fe2 https://www.encodeproject.org/files/ENCFF417HVG/@@download/ENCFF417HVG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF154LAG bed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF083YAZ, ENCFF446WFN, ENCFF542RYU 823930 ENCODE Processing Pipeline fadeddb8304bd4520b5d914ec281af70 https://www.encodeproject.org/files/ENCFF154LAG/@@download/ENCFF154LAG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF632FLH bed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF083YAZ, ENCFF446WFN 1341831 ENCODE Processing Pipeline f30eca8d1440ecc5d859f9fd3e749731 https://www.encodeproject.org/files/ENCFF632FLH/@@download/ENCFF632FLH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF429DCH bigBed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF154LAG 2534873 ENCODE Processing Pipeline 62c9148e68f65c1f9bc2dbbbb0e5ad02 https://www.encodeproject.org/files/ENCFF429DCH/@@download/ENCFF429DCH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF122UCK bigBed narrowPeak peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417HVG 2324535 ENCODE Processing Pipeline ff790e975bf20a20d04e558b8ec31844 https://www.encodeproject.org/files/ENCFF122UCK/@@download/ENCFF122UCK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF677ORF bigWig signal p-value ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF083YAZ, ENCFF446WFN 349471943 ENCODE Processing Pipeline 144ddd613d79381bde56623086f137d4 https://www.encodeproject.org/files/ENCFF677ORF/@@download/ENCFF677ORF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF556NLP bigWig signal p-value ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF542RYU 391691138 ENCODE Processing Pipeline 98d00c4fb2604ca5f9b6d53201dbdab6 https://www.encodeproject.org/files/ENCFF556NLP/@@download/ENCFF556NLP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF634RHI bigWig signal p-value ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF083YAZ, ENCFF446WFN, ENCFF542RYU 608907720 ENCODE Processing Pipeline 77e6813177b9de9199782885b14a35a7 https://www.encodeproject.org/files/ENCFF634RHI/@@download/ENCFF634RHI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF927TUT bigWig fold change over control ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF083YAZ, ENCFF446WFN 306967271 ENCODE Processing Pipeline 62229434a91a520690d3498688d1c96d https://www.encodeproject.org/files/ENCFF927TUT/@@download/ENCFF927TUT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF352HIG bigWig fold change over control ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF542RYU 431378265 ENCODE Processing Pipeline 52d640ebc8ead510cb33234c617f7c4d https://www.encodeproject.org/files/ENCFF352HIG/@@download/ENCFF352HIG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF244GAG bigWig fold change over control ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF083YAZ, ENCFF446WFN, ENCFF542RYU 607721503 ENCODE Processing Pipeline 6deb366de6905c3222eddff2b5c3daa2 https://www.encodeproject.org/files/ENCFF244GAG/@@download/ENCFF244GAG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF715GUK bigBed narrowPeak replicated peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF262CWR 1775328 ENCODE Processing Pipeline 64f6039792df144e3dd5ffec5e4088c2 https://www.encodeproject.org/files/ENCFF715GUK/@@download/ENCFF715GUK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF262CWR bed narrowPeak replicated peaks ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF154LAG, ENCFF417HVG, ENCFF632FLH 709640 ENCODE Processing Pipeline 054b842f5e097b1e10fb86325504f8be https://www.encodeproject.org/files/ENCFF262CWR/@@download/ENCFF262CWR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001LPC bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPR 2045869124 Bing Ren, UCSD 8d89b215c58910af8fbfef861cca760e https://www.encodeproject.org/files/ENCFF001LPC/@@download/ENCFF001LPC.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001LPD bigBed broadPeak peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAT 312183 Bing Ren, UCSD 349a17f74f73e11af3af8be36c54f251 https://www.encodeproject.org/files/ENCFF001LPD/@@download/ENCFF001LPD.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001LPF bigWig signal ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPC, ENCFF001LPG 63780380 Bing Ren, UCSD 54158dcb7a1d521905000ba266fdba7d https://www.encodeproject.org/files/ENCFF001LPF/@@download/ENCFF001LPF.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001LPG bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPN 1650043139 Bing Ren, UCSD 452cbbe8d1f5a7218591bb0694c9dbe4 https://www.encodeproject.org/files/ENCFF001LPG/@@download/ENCFF001LPG.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001LPN fastq reads ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1770770669 Bing Ren, UCSD e90e9e4a761b33e80d57885159d92fe0 https://www.encodeproject.org/files/ENCFF001LPN/@@download/ENCFF001LPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001LPR fastq reads ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 2228558413 Bing Ren, UCSD 7f389b33cd3086d7ed3872cc70101686 https://www.encodeproject.org/files/ENCFF001LPR/@@download/ENCFF001LPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001YAT bed broadPeak peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPC, ENCFF001LPG 201407 Bing Ren, UCSD dfbeaeb7fcef4137087c7820c1e466a7 https://www.encodeproject.org/files/ENCFF001YAT/@@download/ENCFF001YAT.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF367BFL bam unfiltered alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPN, ENCFF018NEO 1684722730 ENCODE Processing Pipeline f0dcd98efe6664eec6650d1f212f8bec https://www.encodeproject.org/files/ENCFF367BFL/@@download/ENCFF367BFL.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF079BHN bam unfiltered alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPR, ENCFF018NEO 2069223041 ENCODE Processing Pipeline 8c2bfbd7d930defce86c2e2a4b2e659e https://www.encodeproject.org/files/ENCFF079BHN/@@download/ENCFF079BHN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF265GQV bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPN, ENCFF018NEO 315183523 ENCODE Processing Pipeline 6d8270688bf2441c23374d824d88410d https://www.encodeproject.org/files/ENCFF265GQV/@@download/ENCFF265GQV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF824OPU bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPR, ENCFF018NEO 292966100 ENCODE Processing Pipeline 86340943f67e7c298b28e687e12496cb https://www.encodeproject.org/files/ENCFF824OPU/@@download/ENCFF824OPU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF478IAL bigWig signal p-value ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 196116639 ENCODE Processing Pipeline e333949b166f45266a10050b8ac733ca https://www.encodeproject.org/files/ENCFF478IAL/@@download/ENCFF478IAL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF153FEI bigWig signal p-value ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF265GQV, ENCFF780TFB 144729732 ENCODE Processing Pipeline a81ffdc0a48dc202bd478474427623e1 https://www.encodeproject.org/files/ENCFF153FEI/@@download/ENCFF153FEI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF183BFJ bigWig signal p-value ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF265GQV, ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 237142003 ENCODE Processing Pipeline 47b44966a4642948e480befcbfe48327 https://www.encodeproject.org/files/ENCFF183BFJ/@@download/ENCFF183BFJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF218UAZ bigWig fold change over control ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF265GQV, ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 261111332 ENCODE Processing Pipeline 1ec8a1f318873e4fc2eaaad851c9728d https://www.encodeproject.org/files/ENCFF218UAZ/@@download/ENCFF218UAZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF538WYG bigBed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF007TXO 9769150 ENCODE Processing Pipeline bf250b750d2903ad782f37414fdd3b0f https://www.encodeproject.org/files/ENCFF538WYG/@@download/ENCFF538WYG.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF039DWK bed narrowPeak optimal idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF007TXO, ENCFF388WCL, ENCFF547MET, ENCFF941FIA 301620 ENCODE Processing Pipeline 0e2cb01687976da10bfa79b0b3f2fc35 https://www.encodeproject.org/files/ENCFF039DWK/@@download/ENCFF039DWK.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF251PXX bigWig fold change over control ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF265GQV, ENCFF780TFB 131883856 ENCODE Processing Pipeline a66b63114fadf6551cd47082350ecdad https://www.encodeproject.org/files/ENCFF251PXX/@@download/ENCFF251PXX.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF320NQV bigBed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF388WCL 11152521 ENCODE Processing Pipeline aa05fbcc99e52193eb59b23d88e000b6 https://www.encodeproject.org/files/ENCFF320NQV/@@download/ENCFF320NQV.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF757NKX bigBed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF941FIA 12775787 ENCODE Processing Pipeline 2b17f60aa776c05c3d758354ffd5af1f https://www.encodeproject.org/files/ENCFF757NKX/@@download/ENCFF757NKX.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF599FOL bigWig fold change over control ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 151543211 ENCODE Processing Pipeline 09e25248241d43953dceeb2c5e2121d7 https://www.encodeproject.org/files/ENCFF599FOL/@@download/ENCFF599FOL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF007TXO bed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF265GQV, ENCFF780TFB 4220812 ENCODE Processing Pipeline 2ef8feb56a11097bd2b11f016b65277e https://www.encodeproject.org/files/ENCFF007TXO/@@download/ENCFF007TXO.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF941FIA bed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF265GQV, ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 5772863 ENCODE Processing Pipeline d52585eab873a383eed08c1203c51380 https://www.encodeproject.org/files/ENCFF941FIA/@@download/ENCFF941FIA.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF909JGW bed narrowPeak conservative idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF007TXO, ENCFF388WCL, ENCFF547MET, ENCFF941FIA 287591 ENCODE Processing Pipeline d052e4bb5b95fc8f62f9ee1282c1e8c2 https://www.encodeproject.org/files/ENCFF909JGW/@@download/ENCFF909JGW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF077RTD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF909JGW 726202 ENCODE Processing Pipeline 7c95e0e8840f85f8e3d5454b23f6a2f1 https://www.encodeproject.org/files/ENCFF077RTD/@@download/ENCFF077RTD.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF614PAZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF039DWK 752485 ENCODE Processing Pipeline ec5dc61abd9cf5183a48648f98b4c053 https://www.encodeproject.org/files/ENCFF614PAZ/@@download/ENCFF614PAZ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF388WCL bed narrowPeak peaks and background as input for IDR ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF824OPU 4627030 ENCODE Processing Pipeline 9d93c9f3cef2428dd3badf1b8c8c3948 https://www.encodeproject.org/files/ENCFF388WCL/@@download/ENCFF388WCL.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001LZH bigBed broadPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YCR 1488756 Ross Hardison, PennState 5a29f1ca2033b200ca1298f328c672d4 https://www.encodeproject.org/files/ENCFF001LZH/@@download/ENCFF001LZH.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF001LZI bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LZO 1452922456 Ross Hardison, PennState f283441a79014d719828582aebe695c7 https://www.encodeproject.org/files/ENCFF001LZI/@@download/ENCFF001LZI.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF001LZJ bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LZR 4901950835 Ross Hardison, PennState e98f5ee0904e0bb833ed50a3c5c76761 https://www.encodeproject.org/files/ENCFF001LZJ/@@download/ENCFF001LZJ.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF001LZK bigBed broadPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCS 1460916 Ross Hardison, PennState 49e52949c86667dad0b540efbd9edc37 https://www.encodeproject.org/files/ENCFF001LZK/@@download/ENCFF001LZK.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF001LZL bigBed broadPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCT 1127501 Ross Hardison, PennState 8ef1efa08d51621e9f6436e4df910461 https://www.encodeproject.org/files/ENCFF001LZL/@@download/ENCFF001LZL.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF001LZM bigWig signal ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 2093807974 Ross Hardison, PennState 3588543432f82cacad9daf03c0426ccb https://www.encodeproject.org/files/ENCFF001LZM/@@download/ENCFF001LZM.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001LZN bigWig signal ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5830442768 Ross Hardison, PennState 62c6e1403276596a04f4ea50282b1cad https://www.encodeproject.org/files/ENCFF001LZN/@@download/ENCFF001LZN.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001LZO fastq reads ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 36 single-ended 1337611133 Ross Hardison, PennState af51e1fbaf1bcfc3cb5a3266178e9f8a https://www.encodeproject.org/files/ENCFF001LZO/@@download/ENCFF001LZO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF001LZP bigWig signal ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 5928509817 Ross Hardison, PennState 507719492afc3b22ba35500bdfa43684 https://www.encodeproject.org/files/ENCFF001LZP/@@download/ENCFF001LZP.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001LZR fastq reads ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4400868934 Ross Hardison, PennState 4439dc373fdef98f7b3c902efdaa2144 https://www.encodeproject.org/files/ENCFF001LZR/@@download/ENCFF001LZR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MPG/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF001YCR bed broadPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 617272 Ross Hardison, PennState 822ccf2107bbb2f555b90e97a87482f6 https://www.encodeproject.org/files/ENCFF001YCR/@@download/ENCFF001YCR.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001YCS bed broadPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 480343 Ross Hardison, PennState c0c4901d66e286267143164402056679 https://www.encodeproject.org/files/ENCFF001YCS/@@download/ENCFF001YCS.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001YCT bed broadPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 496466 Ross Hardison, PennState 474132ca22f1f6b900cbc98e841533df https://www.encodeproject.org/files/ENCFF001YCT/@@download/ENCFF001YCT.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF335ECY bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LZR, ENCFF806TVZ 3454328662 ENCODE Processing Pipeline aa549cf29a0b6366bcb25afcc806720c https://www.encodeproject.org/files/ENCFF335ECY/@@download/ENCFF335ECY.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF399CDB bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LZO, ENCFF806TVZ 841184919 ENCODE Processing Pipeline fceda3ae09f73450f3c2ed4ce3cf1659 https://www.encodeproject.org/files/ENCFF399CDB/@@download/ENCFF399CDB.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF879YUT bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LZO, ENCFF018NEO 841217795 ENCODE Processing Pipeline 43ce4e93ba0c17e28f6d3212d4bd94eb https://www.encodeproject.org/files/ENCFF879YUT/@@download/ENCFF879YUT.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF661YDF bam unfiltered alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LZO, ENCFF018NEO 1501686088 ENCODE Processing Pipeline 0e9ca9838b4b2b2ad2e8037b4dc063cf https://www.encodeproject.org/files/ENCFF661YDF/@@download/ENCFF661YDF.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF417OYA bam unfiltered alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LZR, ENCFF018NEO 3916857803 ENCODE Processing Pipeline 0c6ef468e3ff54d1acf8e404287272b1 https://www.encodeproject.org/files/ENCFF417OYA/@@download/ENCFF417OYA.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF301NHS bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LZR, ENCFF018NEO 2652647509 ENCODE Processing Pipeline 93b2a526d133b7342edfd2328ba5e2d1 https://www.encodeproject.org/files/ENCFF301NHS/@@download/ENCFF301NHS.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF715PNU bed narrowPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF879YUT, ENCFF984QUA 1179022 ENCODE Processing Pipeline e6b29dd59234df5c687e441c0261c195 https://www.encodeproject.org/files/ENCFF715PNU/@@download/ENCFF715PNU.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF264OVY bed narrowPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF301NHS, ENCFF984QUA 1108345 ENCODE Processing Pipeline 92188bdf628b7c6ec917c48ea270f8f9 https://www.encodeproject.org/files/ENCFF264OVY/@@download/ENCFF264OVY.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF543RKC bigBed narrowPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF958FJZ 3206938 ENCODE Processing Pipeline 8f5746070d72cc4a0a5d74c963196906 https://www.encodeproject.org/files/ENCFF543RKC/@@download/ENCFF543RKC.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF958FJZ bed narrowPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF301NHS, ENCFF879YUT, ENCFF984QUA 1110743 ENCODE Processing Pipeline 28aa9d83f5f680fd1d8119846faf9133 https://www.encodeproject.org/files/ENCFF958FJZ/@@download/ENCFF958FJZ.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF488KAQ bigBed narrowPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF715PNU 3176336 ENCODE Processing Pipeline ca76ffaee61710c5ac7a6fe6122629cf https://www.encodeproject.org/files/ENCFF488KAQ/@@download/ENCFF488KAQ.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF484JEV bigBed narrowPeak peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF264OVY 2990960 ENCODE Processing Pipeline 792fb0a13ad12a0007be06df042b281e https://www.encodeproject.org/files/ENCFF484JEV/@@download/ENCFF484JEV.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF316WMI bigWig signal p-value ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF879YUT, ENCFF984QUA 750478879 ENCODE Processing Pipeline 420e4224781573e4017307fdea280126 https://www.encodeproject.org/files/ENCFF316WMI/@@download/ENCFF316WMI.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF292UCK bigWig signal p-value ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF301NHS, ENCFF984QUA 1424315137 ENCODE Processing Pipeline 803b12fd043b7ad0f7e5ae0c6b650e09 https://www.encodeproject.org/files/ENCFF292UCK/@@download/ENCFF292UCK.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF098DTA bigWig signal p-value ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF301NHS, ENCFF879YUT, ENCFF984QUA 1263186891 ENCODE Processing Pipeline 814bb919688043ea04e07d08dc3a8fc4 https://www.encodeproject.org/files/ENCFF098DTA/@@download/ENCFF098DTA.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF172DAW bigWig fold change over control ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF879YUT, ENCFF984QUA 378292776 ENCODE Processing Pipeline a2d03aecd53debd5f318a153a69ed1be https://www.encodeproject.org/files/ENCFF172DAW/@@download/ENCFF172DAW.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF929XMJ bigWig fold change over control ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF301NHS, ENCFF984QUA 1475622963 ENCODE Processing Pipeline 13a875b006521619f95e110115e7b04d https://www.encodeproject.org/files/ENCFF929XMJ/@@download/ENCFF929XMJ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF249XCU bigWig fold change over control ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF301NHS, ENCFF879YUT, ENCFF984QUA 1566083625 ENCODE Processing Pipeline f4ec3b59cf4e496a5bf44eece5d16d36 https://www.encodeproject.org/files/ENCFF249XCU/@@download/ENCFF249XCU.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF594NXI bed narrowPeak replicated peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF264OVY, ENCFF715PNU, ENCFF958FJZ 808432 ENCODE Processing Pipeline bfcc249276f1339df5c7c6b973d408bf https://www.encodeproject.org/files/ENCFF594NXI/@@download/ENCFF594NXI.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF936HED bigBed narrowPeak replicated peaks ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF594NXI 1791665 ENCODE Processing Pipeline 6764f5416fc86411a5a81aaea690b8d9 https://www.encodeproject.org/files/ENCFF936HED/@@download/ENCFF936HED.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF940YTF fastq reads ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 43109449 Bing Ren, UCSD d43ab546456c25087a1e780074ea12ff SRA:SRR3651826 https://www.encodeproject.org/files/ENCFF940YTF/@@download/ENCFF940YTF.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF867UKY fastq reads ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1780835101 Bing Ren, UCSD 6394c4fa550b10abbfe7d3a02954cf45 SRA:SRR3651825 https://www.encodeproject.org/files/ENCFF867UKY/@@download/ENCFF867UKY.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF743ZOS fastq reads ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 945913393 Bing Ren, UCSD 4a1832c0cef022efca07c91726d720e8 SRA:SRR3651827 https://www.encodeproject.org/files/ENCFF743ZOS/@@download/ENCFF743ZOS.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF169CIH bam alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF867UKY 1342348026 ENCODE Processing Pipeline 49119fb23c151b62c7accbeacc116985 https://www.encodeproject.org/files/ENCFF169CIH/@@download/ENCFF169CIH.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF858PBW bam alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF743ZOS, ENCFF806TVZ, ENCFF940YTF 921317290 ENCODE Processing Pipeline c439d6735dd096b4c8ad5970c3f07b63 https://www.encodeproject.org/files/ENCFF858PBW/@@download/ENCFF858PBW.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF784GRY bed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF169CIH, ENCFF595MDP 1323304 ENCODE Processing Pipeline 9931c876422a3cfbafc3d4af8d694f68 https://www.encodeproject.org/files/ENCFF784GRY/@@download/ENCFF784GRY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF458KUF bed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF858PBW 908377 ENCODE Processing Pipeline 0dcdb5880d6edbf98dcea5bcbe59af26 https://www.encodeproject.org/files/ENCFF458KUF/@@download/ENCFF458KUF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF449RRZ bed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF169CIH, ENCFF233LRZ, ENCFF595MDP, ENCFF858PBW 1570766 ENCODE Processing Pipeline 274da415c941091079538c6c81dc2958 https://www.encodeproject.org/files/ENCFF449RRZ/@@download/ENCFF449RRZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF692GVS bigBed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF449RRZ 3615853 ENCODE Processing Pipeline ff1461dc198b9e1e94591bd7d426ba1c https://www.encodeproject.org/files/ENCFF692GVS/@@download/ENCFF692GVS.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF012IEU bigBed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF784GRY 3155357 ENCODE Processing Pipeline 52e95b4c096773ea05326c8bd4a61b55 https://www.encodeproject.org/files/ENCFF012IEU/@@download/ENCFF012IEU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF545VPF bigWig signal p-value ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF169CIH, ENCFF595MDP 542734762 ENCODE Processing Pipeline 8b9302645eec547420ddc3bec6f0a745 https://www.encodeproject.org/files/ENCFF545VPF/@@download/ENCFF545VPF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF506BHN bigBed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF458KUF 2319799 ENCODE Processing Pipeline b1cdbf4307e7d3837812e28020f56e77 https://www.encodeproject.org/files/ENCFF506BHN/@@download/ENCFF506BHN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF866MGL bigWig signal p-value ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF858PBW 513798318 ENCODE Processing Pipeline e6479e503fa548b5af928313cb87e4d9 https://www.encodeproject.org/files/ENCFF866MGL/@@download/ENCFF866MGL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF248LPH bigWig signal p-value ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF169CIH, ENCFF233LRZ, ENCFF595MDP, ENCFF858PBW 1044819390 ENCODE Processing Pipeline 837dc066b64312158bfb65154ee70ee2 https://www.encodeproject.org/files/ENCFF248LPH/@@download/ENCFF248LPH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF896KMU bigWig fold change over control ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF169CIH, ENCFF595MDP 649733477 ENCODE Processing Pipeline f1d503e607e895e7345b992944171f13 https://www.encodeproject.org/files/ENCFF896KMU/@@download/ENCFF896KMU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF259LUF bigWig fold change over control ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF858PBW 524494678 ENCODE Processing Pipeline 473350dad1d7bf0b604acd97d0fad7ab https://www.encodeproject.org/files/ENCFF259LUF/@@download/ENCFF259LUF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF340HBC bigWig fold change over control ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF169CIH, ENCFF233LRZ, ENCFF595MDP, ENCFF858PBW 1121678275 ENCODE Processing Pipeline 173e7b4c07937aa623cd4499b510a97e https://www.encodeproject.org/files/ENCFF340HBC/@@download/ENCFF340HBC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF331UJE bed narrowPeak replicated peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF449RRZ, ENCFF458KUF, ENCFF784GRY 749345 ENCODE Processing Pipeline 924e741cf293428ee9acf20e8f547357 https://www.encodeproject.org/files/ENCFF331UJE/@@download/ENCFF331UJE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF548FCO bigBed narrowPeak replicated peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF331UJE 1847999 ENCODE Processing Pipeline 033f4113269573bef2e8e08b2ec7c1f6 https://www.encodeproject.org/files/ENCFF548FCO/@@download/ENCFF548FCO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF942IHD bam unfiltered alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF743ZOS, ENCFF940YTF 1340904377 ENCODE Processing Pipeline 1743cbcecb3315f5146c9ad3f4ed6097 https://www.encodeproject.org/files/ENCFF942IHD/@@download/ENCFF942IHD.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF286MPL bam unfiltered alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF867UKY 2262170308 ENCODE Processing Pipeline 10f052fdd58ee0b3799508bd6d92d68f https://www.encodeproject.org/files/ENCFF286MPL/@@download/ENCFF286MPL.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF876AAU bam alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF743ZOS, ENCFF940YTF 921080826 ENCODE Processing Pipeline 795d9a3d50992a5d6e26abaab4f22892 https://www.encodeproject.org/files/ENCFF876AAU/@@download/ENCFF876AAU.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF879FUS bam alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF867UKY 1342059438 ENCODE Processing Pipeline df1f01e16208a2822ac613033b25787d https://www.encodeproject.org/files/ENCFF879FUS/@@download/ENCFF879FUS.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF667VYF bigBed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF261QZV 3134516 ENCODE Processing Pipeline 37781abe63b4e82154bdc11acf5a6319 https://www.encodeproject.org/files/ENCFF667VYF/@@download/ENCFF667VYF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF936YQL bed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF879FUS 1344050 ENCODE Processing Pipeline 75b40bc1633ce45bb84378c8aecc2f61 https://www.encodeproject.org/files/ENCFF936YQL/@@download/ENCFF936YQL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF782OTD bed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF781DUP, ENCFF876AAU 951474 ENCODE Processing Pipeline 3cd3c5d8081583194962fd78f38676bc https://www.encodeproject.org/files/ENCFF782OTD/@@download/ENCFF782OTD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF261QZV bed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF781DUP, ENCFF876AAU, ENCFF879FUS 1333798 ENCODE Processing Pipeline 2f96e17ddb7699447a3fa3db2e3ae686 https://www.encodeproject.org/files/ENCFF261QZV/@@download/ENCFF261QZV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF209XPL bigBed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF936YQL 3197010 ENCODE Processing Pipeline e9ba646760fb59908eac3f31405b272a https://www.encodeproject.org/files/ENCFF209XPL/@@download/ENCFF209XPL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF014OIE bigBed narrowPeak peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF782OTD 2411569 ENCODE Processing Pipeline 22f001ef171b660890143ecb8efedfd0 https://www.encodeproject.org/files/ENCFF014OIE/@@download/ENCFF014OIE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF425JUJ bigWig signal p-value ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF879FUS 599817115 ENCODE Processing Pipeline d787bf3fc46673db6612a7857e7e8111 https://www.encodeproject.org/files/ENCFF425JUJ/@@download/ENCFF425JUJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF101ORM bigWig signal p-value ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF781DUP, ENCFF876AAU 579735522 ENCODE Processing Pipeline 2ea8d50ed4df984fa22146438a3afe89 https://www.encodeproject.org/files/ENCFF101ORM/@@download/ENCFF101ORM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF154ZKF bigWig signal p-value ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF781DUP, ENCFF876AAU, ENCFF879FUS 926605014 ENCODE Processing Pipeline d17f0b12ccac92934872266e90d1bc07 https://www.encodeproject.org/files/ENCFF154ZKF/@@download/ENCFF154ZKF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF959AYJ bigWig fold change over control ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF879FUS 658193665 ENCODE Processing Pipeline f55779a0207c125f6f4e00d0df51a498 https://www.encodeproject.org/files/ENCFF959AYJ/@@download/ENCFF959AYJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF925IED bigWig fold change over control ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF781DUP, ENCFF876AAU 492242031 ENCODE Processing Pipeline 926297742f461c7203ab98d72754aaf0 https://www.encodeproject.org/files/ENCFF925IED/@@download/ENCFF925IED.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF909MUJ bigWig fold change over control ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF781DUP, ENCFF876AAU, ENCFF879FUS 1144274895 ENCODE Processing Pipeline 22b511ab4e68a5f2ee98ba5d2f7b6fc6 https://www.encodeproject.org/files/ENCFF909MUJ/@@download/ENCFF909MUJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF029PID bed narrowPeak replicated peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF261QZV, ENCFF782OTD, ENCFF936YQL 767904 ENCODE Processing Pipeline 98f052bcd4a05a99ddbb78226d83a2d7 https://www.encodeproject.org/files/ENCFF029PID/@@download/ENCFF029PID.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF539UGT bigBed narrowPeak replicated peaks ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF029PID 1882550 ENCODE Processing Pipeline d1d36a41a89a48cf01cf54acbfd60a16 https://www.encodeproject.org/files/ENCFF539UGT/@@download/ENCFF539UGT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF957FQA fastq reads ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1721803156 Bing Ren, UCSD 351ac458e3949d6fda7a06ae9d9b3ed7 SRA:SRR3652086 https://www.encodeproject.org/files/ENCFF957FQA/@@download/ENCFF957FQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF854PCP fastq reads ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 36 single-ended 573699793 Bing Ren, UCSD cbe8143608840b0fe91f93565dcdb5e8 SRA:SRR3652087 https://www.encodeproject.org/files/ENCFF854PCP/@@download/ENCFF854PCP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXO/ released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF332BOE fastq reads ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 3166533331 Bing Ren, UCSD 0bfc426fbbd5a2d33d8ec6fbd8c5cedd SRA:SRR3652085 https://www.encodeproject.org/files/ENCFF332BOE/@@download/ENCFF332BOE.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF293WAA bam alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF806TVZ, ENCFF854PCP, ENCFF957FQA 1052341526 ENCODE Processing Pipeline a2958ae7b990bb276e9b7dc03594ba96 https://www.encodeproject.org/files/ENCFF293WAA/@@download/ENCFF293WAA.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF022JWJ bam alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF332BOE, ENCFF806TVZ 1168680736 ENCODE Processing Pipeline 647169c92f4cef9b3b8a11bdaac8cfe7 https://www.encodeproject.org/files/ENCFF022JWJ/@@download/ENCFF022JWJ.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF909ZJY bed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF022JWJ, ENCFF293WAA, ENCFF562EMV, ENCFF623BMA 449600 ENCODE Processing Pipeline 95ee421b2dba6f3808fdca97de5911ba https://www.encodeproject.org/files/ENCFF909ZJY/@@download/ENCFF909ZJY.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF967FCW bigBed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF380HQD 1355837 ENCODE Processing Pipeline 18bbc5e5bc9ac07802c7aa17a3b4629d https://www.encodeproject.org/files/ENCFF967FCW/@@download/ENCFF967FCW.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF219SUD bed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF293WAA, ENCFF562EMV, ENCFF623BMA 1087655 ENCODE Processing Pipeline 7f81a1197fcdabc90fcbdfbf9756dd81 https://www.encodeproject.org/files/ENCFF219SUD/@@download/ENCFF219SUD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF380HQD bed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF022JWJ, ENCFF562EMV, ENCFF623BMA 573733 ENCODE Processing Pipeline e81479f60e1c81fc99cb7124af2d110b https://www.encodeproject.org/files/ENCFF380HQD/@@download/ENCFF380HQD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF095KDZ bigBed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF909ZJY 1074892 ENCODE Processing Pipeline 2dbe2c669f43995306583a67af79fb8e https://www.encodeproject.org/files/ENCFF095KDZ/@@download/ENCFF095KDZ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF353RAU bigBed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF219SUD 2376949 ENCODE Processing Pipeline 776bb07ee2b178cc4f17049f97dca80b https://www.encodeproject.org/files/ENCFF353RAU/@@download/ENCFF353RAU.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF597REZ bigWig signal p-value ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF293WAA, ENCFF562EMV, ENCFF623BMA 510799004 ENCODE Processing Pipeline 8cb4d7f63d81ff0df52f7171de42809c https://www.encodeproject.org/files/ENCFF597REZ/@@download/ENCFF597REZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF218QHH bigWig signal p-value ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF022JWJ, ENCFF293WAA, ENCFF562EMV, ENCFF623BMA 487238857 ENCODE Processing Pipeline d8d4a8a596d93329a1adbc2d747707d1 https://www.encodeproject.org/files/ENCFF218QHH/@@download/ENCFF218QHH.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF674AAV bigWig signal p-value ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF022JWJ, ENCFF562EMV, ENCFF623BMA 480204889 ENCODE Processing Pipeline 4f18131665e82f05ea83f5b8a2ae84fd https://www.encodeproject.org/files/ENCFF674AAV/@@download/ENCFF674AAV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF598FOZ bigWig fold change over control ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF293WAA, ENCFF562EMV, ENCFF623BMA 455810644 ENCODE Processing Pipeline 70faa7db3a8ea7acab4d3652c4d20c7a https://www.encodeproject.org/files/ENCFF598FOZ/@@download/ENCFF598FOZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF661SPW bigWig fold change over control ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF022JWJ, ENCFF562EMV, ENCFF623BMA 513335728 ENCODE Processing Pipeline 76f5b103140be7dc80e0ade1e154f28f https://www.encodeproject.org/files/ENCFF661SPW/@@download/ENCFF661SPW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF043MYS bigWig fold change over control ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF022JWJ, ENCFF293WAA, ENCFF562EMV, ENCFF623BMA 796873463 ENCODE Processing Pipeline cbe1b1e6c5921ae95b900c17a5a30291 https://www.encodeproject.org/files/ENCFF043MYS/@@download/ENCFF043MYS.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF726PPX bed narrowPeak replicated peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF219SUD, ENCFF380HQD, ENCFF909ZJY 394023 ENCODE Processing Pipeline c628fe41b6895902604d65a3cc2123ee https://www.encodeproject.org/files/ENCFF726PPX/@@download/ENCFF726PPX.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF472LAJ bigBed narrowPeak replicated peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF726PPX 872729 ENCODE Processing Pipeline f497ae652902e779e5d8c6afa3767683 https://www.encodeproject.org/files/ENCFF472LAJ/@@download/ENCFF472LAJ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF190RCD bam unfiltered alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF854PCP, ENCFF957FQA 2881041161 ENCODE Processing Pipeline 38cfbca121281f6a01a334da6c0f881c https://www.encodeproject.org/files/ENCFF190RCD/@@download/ENCFF190RCD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF741OKS bam unfiltered alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF332BOE 3852820766 ENCODE Processing Pipeline b241ed240582373347ae7e0a92bacd52 https://www.encodeproject.org/files/ENCFF741OKS/@@download/ENCFF741OKS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF392CNB bam alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF854PCP, ENCFF957FQA 1051700165 ENCODE Processing Pipeline 3b572598cee7946dae8e7f1f5eb460ce https://www.encodeproject.org/files/ENCFF392CNB/@@download/ENCFF392CNB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF973GPI bam alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF332BOE 1168191748 ENCODE Processing Pipeline aa544d528061e92efff021503569eba0 https://www.encodeproject.org/files/ENCFF973GPI/@@download/ENCFF973GPI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF559WIG bed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF392CNB, ENCFF903NWQ, ENCFF995XOU 1091690 ENCODE Processing Pipeline 338c92ba10e55dbd0382c8f640977127 https://www.encodeproject.org/files/ENCFF559WIG/@@download/ENCFF559WIG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF585CYZ bed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF903NWQ, ENCFF973GPI 129727 ENCODE Processing Pipeline 08d86e9f83c210480dddf36d7134c782 https://www.encodeproject.org/files/ENCFF585CYZ/@@download/ENCFF585CYZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF156AVL bed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF392CNB, ENCFF903NWQ, ENCFF973GPI, ENCFF995XOU 452248 ENCODE Processing Pipeline 3ade25ed171905004dddaec6ada67065 https://www.encodeproject.org/files/ENCFF156AVL/@@download/ENCFF156AVL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF942RGK bigBed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF559WIG 2384615 ENCODE Processing Pipeline c15f7c440f2508004f1ecd0a0f95f7c5 https://www.encodeproject.org/files/ENCFF942RGK/@@download/ENCFF942RGK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF134VAJ bed narrowPeak replicated peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF156AVL, ENCFF559WIG, ENCFF585CYZ 332718 ENCODE Processing Pipeline 3bc52690ba319547da0ac745e54b0922 https://www.encodeproject.org/files/ENCFF134VAJ/@@download/ENCFF134VAJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF708KQZ bigBed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF585CYZ 391221 ENCODE Processing Pipeline ced7a51e0beda08cbe50e8557cdf1115 https://www.encodeproject.org/files/ENCFF708KQZ/@@download/ENCFF708KQZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF651UIM bigWig signal p-value ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF392CNB, ENCFF903NWQ, ENCFF995XOU 460867701 ENCODE Processing Pipeline 0c475859c5c1813bffcea68c23348c62 https://www.encodeproject.org/files/ENCFF651UIM/@@download/ENCFF651UIM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF637BYB bigWig fold change over control ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF392CNB, ENCFF903NWQ, ENCFF973GPI, ENCFF995XOU 802399371 ENCODE Processing Pipeline 0a60f1a793ebe6a5b140a0ed40a65189 https://www.encodeproject.org/files/ENCFF637BYB/@@download/ENCFF637BYB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF907AFM bigBed narrowPeak replicated peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF134VAJ 759658 ENCODE Processing Pipeline 62c60aff0ec796851811a7a0405d7b18 https://www.encodeproject.org/files/ENCFF907AFM/@@download/ENCFF907AFM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF701ZQG bigBed narrowPeak peaks ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF156AVL 1081462 ENCODE Processing Pipeline be8f8a547dfe08f80d864ad9fa26590b https://www.encodeproject.org/files/ENCFF701ZQG/@@download/ENCFF701ZQG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF426EYI bigWig signal p-value ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF903NWQ, ENCFF973GPI 249693004 ENCODE Processing Pipeline 9e4eb9fac6473a0ef935a849190cf775 https://www.encodeproject.org/files/ENCFF426EYI/@@download/ENCFF426EYI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF218GMJ bigWig fold change over control ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF392CNB, ENCFF903NWQ, ENCFF995XOU 456949229 ENCODE Processing Pipeline 6e0b0c0a17ebd4f1fccf6cc3ee8e5b74 https://www.encodeproject.org/files/ENCFF218GMJ/@@download/ENCFF218GMJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF296LAJ bigWig fold change over control ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF903NWQ, ENCFF973GPI 439567614 ENCODE Processing Pipeline 8f7e64c1aed86ee0e614cacee8bc68d3 https://www.encodeproject.org/files/ENCFF296LAJ/@@download/ENCFF296LAJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF301RNE bigWig signal p-value ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF392CNB, ENCFF903NWQ, ENCFF973GPI, ENCFF995XOU 487193049 ENCODE Processing Pipeline 3bbbd13804653f4b42edd46284107a46 https://www.encodeproject.org/files/ENCFF301RNE/@@download/ENCFF301RNE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF002AJM fastq reads ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 700557913 Bing Ren, UCSD c72e9cd6bb0a558f1a78488d1407cd77 SRA:SRR3651498 https://www.encodeproject.org/files/ENCFF002AJM/@@download/ENCFF002AJM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQA/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AJN fastq reads ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 911754046 Bing Ren, UCSD dae315868c0f44106ecc26f97f33cf5b SRA:SRR3651497 https://www.encodeproject.org/files/ENCFF002AJN/@@download/ENCFF002AJN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APX/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF080SET bam alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJN, ENCFF806TVZ 940690934 ENCODE Processing Pipeline d1a5e7aa4dbc760329a5b447721bb2b5 https://www.encodeproject.org/files/ENCFF080SET/@@download/ENCFF080SET.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF197UGT fastq reads ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 569933181 Bing Ren, UCSD 88f804e8fbb3639cd1e39fb0be7ec454 SRA:SRR3651499 https://www.encodeproject.org/files/ENCFF197UGT/@@download/ENCFF197UGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQA/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF444DIL bam alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJM, ENCFF197UGT, ENCFF806TVZ 1309329191 ENCODE Processing Pipeline 8e9812d756f0c452ef06f8be8394b8d5 https://www.encodeproject.org/files/ENCFF444DIL/@@download/ENCFF444DIL.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF971MGX bed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF444DIL, ENCFF775YLK 2234450 ENCODE Processing Pipeline d5543af6ec1ffe5c5af00b4e9a2ea79b https://www.encodeproject.org/files/ENCFF971MGX/@@download/ENCFF971MGX.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF923NYT bed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF080SET, ENCFF775YLK 2734369 ENCODE Processing Pipeline feac955ac85718744446a1b2e810695e https://www.encodeproject.org/files/ENCFF923NYT/@@download/ENCFF923NYT.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF916FVX bed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF080SET, ENCFF444DIL, ENCFF775YLK 2359664 ENCODE Processing Pipeline a3051558a5cc2560046b3e9b4cd84ee9 https://www.encodeproject.org/files/ENCFF916FVX/@@download/ENCFF916FVX.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF227PUP bigBed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF971MGX 4835910 ENCODE Processing Pipeline 887a1c992bb2765526d2648a8183aea8 https://www.encodeproject.org/files/ENCFF227PUP/@@download/ENCFF227PUP.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF694EAJ bigBed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF916FVX 4994950 ENCODE Processing Pipeline e7eccb5818550ac189853d844eedc963 https://www.encodeproject.org/files/ENCFF694EAJ/@@download/ENCFF694EAJ.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF074ACX bigWig signal p-value ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF444DIL, ENCFF775YLK 504528698 ENCODE Processing Pipeline 0caabd032f3a4c0c7e542c3788dc5fce https://www.encodeproject.org/files/ENCFF074ACX/@@download/ENCFF074ACX.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF068DLN bigWig signal p-value ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF080SET, ENCFF444DIL, ENCFF775YLK 740250627 ENCODE Processing Pipeline 37647051a3e6c0ca7f015caf94599c00 https://www.encodeproject.org/files/ENCFF068DLN/@@download/ENCFF068DLN.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF646IAJ bigWig fold change over control ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF444DIL, ENCFF775YLK 575564172 ENCODE Processing Pipeline 9f28ea0129c3db97cc432ecd59ac904e https://www.encodeproject.org/files/ENCFF646IAJ/@@download/ENCFF646IAJ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF136PSZ bigBed narrowPeak replicated peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF978YGE 3346673 ENCODE Processing Pipeline f97bc4c3035bfaf84fb5585056de2771 https://www.encodeproject.org/files/ENCFF136PSZ/@@download/ENCFF136PSZ.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF096GTH bigWig fold change over control ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF080SET, ENCFF444DIL, ENCFF775YLK 837538646 ENCODE Processing Pipeline d3de9d536a226e5a8d17a96c5216195b https://www.encodeproject.org/files/ENCFF096GTH/@@download/ENCFF096GTH.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF978YGE bed narrowPeak replicated peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF916FVX, ENCFF923NYT, ENCFF971MGX 1846759 ENCODE Processing Pipeline 0e376d4d8ade91bcc751214cf2fef9a5 https://www.encodeproject.org/files/ENCFF978YGE/@@download/ENCFF978YGE.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF944HKW bam unfiltered alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJM, ENCFF018NEO, ENCFF197UGT 1533600881 ENCODE Processing Pipeline f94b0dfbdd7af087124194a5c2fc8ae9 https://www.encodeproject.org/files/ENCFF944HKW/@@download/ENCFF944HKW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF633HLI bam unfiltered alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJN, ENCFF018NEO 1215426571 ENCODE Processing Pipeline 2e9207e2c48eb791e6a9d8fcfc71ea65 https://www.encodeproject.org/files/ENCFF633HLI/@@download/ENCFF633HLI.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF348WKW bam alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJN, ENCFF018NEO 940472894 ENCODE Processing Pipeline 68792e35aacace18e5a27ae8ac32ca51 https://www.encodeproject.org/files/ENCFF348WKW/@@download/ENCFF348WKW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF825CUB bam alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJM, ENCFF018NEO, ENCFF197UGT 1164444306 ENCODE Processing Pipeline ed46ff5111f8901bae2cc2c274962f2c https://www.encodeproject.org/files/ENCFF825CUB/@@download/ENCFF825CUB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF121OOF bed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF348WKW, ENCFF831XWF, ENCFF911DNW 2747077 ENCODE Processing Pipeline a6c11a8f95f12cbf9d0ebfe37149cad2 https://www.encodeproject.org/files/ENCFF121OOF/@@download/ENCFF121OOF.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF143MET bed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF825CUB, ENCFF911DNW 1253439 ENCODE Processing Pipeline 824995fc60155f14a0d098294d33b950 https://www.encodeproject.org/files/ENCFF143MET/@@download/ENCFF143MET.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF395QPZ bigBed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF121OOF 5799002 ENCODE Processing Pipeline 94787900082eb862e280d0798bec7e86 https://www.encodeproject.org/files/ENCFF395QPZ/@@download/ENCFF395QPZ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF021GHZ bed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF348WKW, ENCFF825CUB, ENCFF831XWF, ENCFF911DNW 2181586 ENCODE Processing Pipeline 27285e905b85ffebfd7f4e37d691611a https://www.encodeproject.org/files/ENCFF021GHZ/@@download/ENCFF021GHZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF031ZTY bigBed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF021GHZ 4701952 ENCODE Processing Pipeline 567b50b5291119a2d6708e4a0d9fe8d4 https://www.encodeproject.org/files/ENCFF031ZTY/@@download/ENCFF031ZTY.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF605TKO bigBed narrowPeak peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF143MET 2936665 ENCODE Processing Pipeline b451d53641531c8104ef93c781070baa https://www.encodeproject.org/files/ENCFF605TKO/@@download/ENCFF605TKO.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF378YEX bigWig signal p-value ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF348WKW, ENCFF831XWF, ENCFF911DNW 603801831 ENCODE Processing Pipeline ef7736ab4c4554b771c2f435588a4ee2 https://www.encodeproject.org/files/ENCFF378YEX/@@download/ENCFF378YEX.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF418QKE bigWig signal p-value ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF825CUB, ENCFF911DNW 416422784 ENCODE Processing Pipeline 43953ccc168a99314df7dccb376a61de https://www.encodeproject.org/files/ENCFF418QKE/@@download/ENCFF418QKE.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF383YKG bigWig signal p-value ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF348WKW, ENCFF825CUB, ENCFF831XWF, ENCFF911DNW 729377218 ENCODE Processing Pipeline a0ddd71dc821159f21610aa0ad5c004b https://www.encodeproject.org/files/ENCFF383YKG/@@download/ENCFF383YKG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF851OHP bigWig fold change over control ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF348WKW, ENCFF831XWF, ENCFF911DNW 525210599 ENCODE Processing Pipeline f48972fd58a58a2b714df8cdf756d649 https://www.encodeproject.org/files/ENCFF851OHP/@@download/ENCFF851OHP.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF575YJP bigWig fold change over control ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF825CUB, ENCFF911DNW 466971389 ENCODE Processing Pipeline 5d16b1620c36b754176e4aca634c6fd6 https://www.encodeproject.org/files/ENCFF575YJP/@@download/ENCFF575YJP.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF173OSG bigWig fold change over control ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF348WKW, ENCFF825CUB, ENCFF831XWF, ENCFF911DNW 833448614 ENCODE Processing Pipeline d68fba858b7bcf679a0a9ca3715a1167 https://www.encodeproject.org/files/ENCFF173OSG/@@download/ENCFF173OSG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF820FBS bed narrowPeak replicated peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF021GHZ, ENCFF121OOF, ENCFF143MET 1626967 ENCODE Processing Pipeline cc493899a4d7ea05cc8115c59b0441a7 https://www.encodeproject.org/files/ENCFF820FBS/@@download/ENCFF820FBS.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF999AGL bigBed narrowPeak replicated peaks ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF820FBS 2990809 ENCODE Processing Pipeline 79bd1e43c47ec29e55d932fcfdee363f https://www.encodeproject.org/files/ENCFF999AGL/@@download/ENCFF999AGL.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001LWR bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LXH 4669740043 Ross Hardison, PennState 91e21c76ff390e99f84e22e950ed26f1 https://www.encodeproject.org/files/ENCFF001LWR/@@download/ENCFF001LWR.bam mm9 archived inconsistent platforms control insufficient read depth ENCFF001LWS bigBed broadPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YBZ 2221906 Ross Hardison, PennState 5ff2fc06b713303adf5aad01b221ef91 https://www.encodeproject.org/files/ENCFF001LWS/@@download/ENCFF001LWS.bigBed mm9 archived inconsistent platforms control insufficient read depth ENCFF001LWT bigBed broadPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCA 1859922 Ross Hardison, PennState f91851ce1a4e48a7e8eb519185da70bd https://www.encodeproject.org/files/ENCFF001LWT/@@download/ENCFF001LWT.bigBed mm9 archived inconsistent platforms control insufficient read depth ENCFF001LWU bigBed broadPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCB 2220820 Ross Hardison, PennState 634c91a9e2a0add9598b3e11c46dd9c2 https://www.encodeproject.org/files/ENCFF001LWU/@@download/ENCFF001LWU.bigBed mm9 archived inconsistent platforms control insufficient read depth ENCFF001LWV bigWig signal ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5703802041 Ross Hardison, PennState 96bcd1d7c869909dbb6b4334c5817378 https://www.encodeproject.org/files/ENCFF001LWV/@@download/ENCFF001LWV.bigWig mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001LWW bigWig signal ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5708636911 Ross Hardison, PennState 64fd448f6173c467ac44bd88d96e0461 https://www.encodeproject.org/files/ENCFF001LWW/@@download/ENCFF001LWW.bigWig mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001LWX bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LXJ 5400780734 Ross Hardison, PennState e487ed46a414176a5ad7658b5986586b https://www.encodeproject.org/files/ENCFF001LWX/@@download/ENCFF001LWX.bam mm9 archived inconsistent platforms control insufficient read depth ENCFF001LWY bigWig signal ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 6344884853 Ross Hardison, PennState ff686c3db1d6527336b2e3ff5ea0c211 https://www.encodeproject.org/files/ENCFF001LWY/@@download/ENCFF001LWY.bigWig mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001LXH fastq reads ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4213649196 Ross Hardison, PennState 9f8c8931a7a78118b08a731afa468956 https://www.encodeproject.org/files/ENCFF001LXH/@@download/ENCFF001LXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMU/ released inconsistent platforms, inconsistent control read length control insufficient read depth ENCFF001LXJ fastq reads ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4976156970 Ross Hardison, PennState a48983a35352bc6c3a5f2a78e87f3a2c https://www.encodeproject.org/files/ENCFF001LXJ/@@download/ENCFF001LXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released inconsistent platforms, inconsistent control read length control insufficient read depth ENCFF001YBZ bed broadPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1059493 Ross Hardison, PennState d2029f507b9f28c015369513e61bf6de https://www.encodeproject.org/files/ENCFF001YBZ/@@download/ENCFF001YBZ.bed.gz mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001YCA bed broadPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 888474 Ross Hardison, PennState 4531c0e01a949cd1b274d00bb4fd4f15 https://www.encodeproject.org/files/ENCFF001YCA/@@download/ENCFF001YCA.bed.gz mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001YCB bed broadPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 996789 Ross Hardison, PennState 0a6dec9ece7fbadf2897f28ed4e8ad81 https://www.encodeproject.org/files/ENCFF001YCB/@@download/ENCFF001YCB.bed.gz mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF688KDP bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LXJ, ENCFF806TVZ 4335516092 ENCODE Processing Pipeline 92c115c2d95e86dcf0d646755dfc098d https://www.encodeproject.org/files/ENCFF688KDP/@@download/ENCFF688KDP.bam mm10-minimal archived inconsistent platforms control insufficient read depth ENCFF651XTT bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LXH, ENCFF806TVZ 3769944394 ENCODE Processing Pipeline 3a90b134624f1784370073925f16537f https://www.encodeproject.org/files/ENCFF651XTT/@@download/ENCFF651XTT.bam mm10-minimal archived inconsistent platforms control insufficient read depth ENCFF752GFF bam unfiltered alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LXH, ENCFF018NEO 4101109900 ENCODE Processing Pipeline dd71afc420cf782077f3af3ef023fed9 https://www.encodeproject.org/files/ENCFF752GFF/@@download/ENCFF752GFF.bam mm10 released inconsistent platforms control insufficient read depth ENCFF145PPL bam unfiltered alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LXJ, ENCFF018NEO 4698966700 ENCODE Processing Pipeline 266160decf6a38e62e772bb6f378354e https://www.encodeproject.org/files/ENCFF145PPL/@@download/ENCFF145PPL.bam mm10 released inconsistent platforms control insufficient read depth ENCFF970ZAR bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LXH, ENCFF018NEO 3147991500 ENCODE Processing Pipeline 948298c2c5f46dfaa7393b7cb5c9c11c https://www.encodeproject.org/files/ENCFF970ZAR/@@download/ENCFF970ZAR.bam mm10 released inconsistent platforms control insufficient read depth ENCFF551NBS bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LXJ, ENCFF018NEO 3585271677 ENCODE Processing Pipeline 03ddd386e8ffaa21e0aa056664a10cda https://www.encodeproject.org/files/ENCFF551NBS/@@download/ENCFF551NBS.bam mm10 released inconsistent platforms control insufficient read depth ENCFF426CSY bed narrowPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF887UBK, ENCFF970ZAR 2700195 ENCODE Processing Pipeline 795ecd681c643b9e25daa7816fadbd76 https://www.encodeproject.org/files/ENCFF426CSY/@@download/ENCFF426CSY.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF860CWE bed narrowPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF381DCK, ENCFF551NBS, ENCFF887UBK, ENCFF970ZAR 2492465 ENCODE Processing Pipeline 0015f280488e85e26cbda8816634daab https://www.encodeproject.org/files/ENCFF860CWE/@@download/ENCFF860CWE.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF521QNS bed narrowPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF381DCK, ENCFF551NBS 1959225 ENCODE Processing Pipeline a163c78d1a18e3316467debaab46d757 https://www.encodeproject.org/files/ENCFF521QNS/@@download/ENCFF521QNS.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF950RLW bigBed narrowPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF426CSY 6459229 ENCODE Processing Pipeline e6702c9a2738c4a90c82795d71ad0702 https://www.encodeproject.org/files/ENCFF950RLW/@@download/ENCFF950RLW.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF269DGD bigBed narrowPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF521QNS 4719823 ENCODE Processing Pipeline f3b03d18b1f9f0dd82d5c96dbd8a98dd https://www.encodeproject.org/files/ENCFF269DGD/@@download/ENCFF269DGD.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF567HLT bigBed narrowPeak peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF860CWE 5959771 ENCODE Processing Pipeline 891ba7e7306466e5ddddc33a902e5923 https://www.encodeproject.org/files/ENCFF567HLT/@@download/ENCFF567HLT.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF444QNY bigWig signal p-value ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF887UBK, ENCFF970ZAR 871031190 ENCODE Processing Pipeline 5b4f0047097ab75fccb444b7bd74dab3 https://www.encodeproject.org/files/ENCFF444QNY/@@download/ENCFF444QNY.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF242DDS bigWig signal p-value ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF381DCK, ENCFF551NBS 420155065 ENCODE Processing Pipeline 00f569bbee0b4374c57e427924e9b4f2 https://www.encodeproject.org/files/ENCFF242DDS/@@download/ENCFF242DDS.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF366ATH bigWig signal p-value ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF381DCK, ENCFF551NBS, ENCFF887UBK, ENCFF970ZAR 839461027 ENCODE Processing Pipeline d58e5af30462f894023f700b3dae26ce https://www.encodeproject.org/files/ENCFF366ATH/@@download/ENCFF366ATH.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF781SGC bigWig fold change over control ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF887UBK, ENCFF970ZAR 1052151850 ENCODE Processing Pipeline 0e1cf7935f531079be69cbd15cec3de1 https://www.encodeproject.org/files/ENCFF781SGC/@@download/ENCFF781SGC.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF539WQB bigWig fold change over control ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF381DCK, ENCFF551NBS 983958974 ENCODE Processing Pipeline 9af34812b039386e4cf0d3c75dc1bf33 https://www.encodeproject.org/files/ENCFF539WQB/@@download/ENCFF539WQB.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF428IAA bed narrowPeak replicated peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF426CSY, ENCFF521QNS, ENCFF860CWE 2853004 ENCODE Processing Pipeline 904b3c04e5fc3ad7f0938e5dad584b1d https://www.encodeproject.org/files/ENCFF428IAA/@@download/ENCFF428IAA.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF803LBL bigBed narrowPeak replicated peaks ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF428IAA 5092433 ENCODE Processing Pipeline 5371d7ed2def1c21df0e6784b3e5392a https://www.encodeproject.org/files/ENCFF803LBL/@@download/ENCFF803LBL.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF007WLT bigWig fold change over control ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF381DCK, ENCFF551NBS, ENCFF887UBK, ENCFF970ZAR 1696488457 ENCODE Processing Pipeline fc057f7cf06611ac79feed1f487fe745 https://www.encodeproject.org/files/ENCFF007WLT/@@download/ENCFF007WLT.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF002ETP fastq reads ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 50 single-ended 1726456160 Bing Ren, UCSD 5f88c70b9d422a799510035a873efb29 SRA:SRR3651929 https://www.encodeproject.org/files/ENCFF002ETP/@@download/ENCFF002ETP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXL/ released inconsistent control read length insufficient read depth, control insufficient read depth ENCFF002ETQ fastq reads ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 2161132248 Bing Ren, UCSD fa96cb8d24de773aa0e5c1140f69927e SRA:SRR3651928 https://www.encodeproject.org/files/ENCFF002ETQ/@@download/ENCFF002ETQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXM/ released inconsistent control read length insufficient read depth, control insufficient read depth ENCFF585HMR bam alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETP, ENCFF806TVZ 1350285568 ENCODE Processing Pipeline 005e457fa91a8447595a71fb47179092 https://www.encodeproject.org/files/ENCFF585HMR/@@download/ENCFF585HMR.bam mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF752XHT bam alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETQ, ENCFF806TVZ 1655704900 ENCODE Processing Pipeline ee1e290c5cb0ae4881c85a63588b064f https://www.encodeproject.org/files/ENCFF752XHT/@@download/ENCFF752XHT.bam mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF380MMQ bed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF585HMR, ENCFF956BKJ 1885131 ENCODE Processing Pipeline 473b461178e3cc42606490980ce7f0fd https://www.encodeproject.org/files/ENCFF380MMQ/@@download/ENCFF380MMQ.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF700BJH bed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF752XHT, ENCFF956BKJ 1833179 ENCODE Processing Pipeline 9561656df1b65da8b801ae77499d0e4f https://www.encodeproject.org/files/ENCFF700BJH/@@download/ENCFF700BJH.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF897SJJ bed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF395ALO, ENCFF585HMR, ENCFF752XHT, ENCFF956BKJ 1712228 ENCODE Processing Pipeline d373afbcef4042f61ba0b570bd2cf369 https://www.encodeproject.org/files/ENCFF897SJJ/@@download/ENCFF897SJJ.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF911DCJ bigBed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF380MMQ 3606492 ENCODE Processing Pipeline feb1b189791ff0aa3d453a3a05a477bd https://www.encodeproject.org/files/ENCFF911DCJ/@@download/ENCFF911DCJ.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF224SFQ bigBed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF897SJJ 4074160 ENCODE Processing Pipeline 2e99a026147e9d638f27d3873d52b12a https://www.encodeproject.org/files/ENCFF224SFQ/@@download/ENCFF224SFQ.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF851TMW bigWig signal p-value ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF585HMR, ENCFF956BKJ 417408194 ENCODE Processing Pipeline 3ca944b94b46000f54bbd3f6027b7f46 https://www.encodeproject.org/files/ENCFF851TMW/@@download/ENCFF851TMW.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF769MXC bigBed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF700BJH 4456041 ENCODE Processing Pipeline 81a18260f6e1125a2377f562d3f81415 https://www.encodeproject.org/files/ENCFF769MXC/@@download/ENCFF769MXC.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF563JAR bigWig signal p-value ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF752XHT, ENCFF956BKJ 518284926 ENCODE Processing Pipeline 4d7d0cabde701e6cef0eb6df5b567d1f https://www.encodeproject.org/files/ENCFF563JAR/@@download/ENCFF563JAR.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF789RDG bigWig signal p-value ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF395ALO, ENCFF585HMR, ENCFF752XHT, ENCFF956BKJ 522499577 ENCODE Processing Pipeline f56076d2f95c53d0ead8acbe70a2d934 https://www.encodeproject.org/files/ENCFF789RDG/@@download/ENCFF789RDG.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF331KZC bigWig fold change over control ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF395ALO, ENCFF585HMR, ENCFF956BKJ 453595974 ENCODE Processing Pipeline 42744025a08a2a80e917ea3286597036 https://www.encodeproject.org/files/ENCFF331KZC/@@download/ENCFF331KZC.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF082PVQ bigWig fold change over control ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF752XHT, ENCFF956BKJ 523547619 ENCODE Processing Pipeline 0a5f049ce999a5d3f44b12ae085837fe https://www.encodeproject.org/files/ENCFF082PVQ/@@download/ENCFF082PVQ.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF634FKB bigWig fold change over control ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF395ALO, ENCFF585HMR, ENCFF752XHT, ENCFF956BKJ 776228293 ENCODE Processing Pipeline 444f6a49d156a320c06549ea04a93d2a https://www.encodeproject.org/files/ENCFF634FKB/@@download/ENCFF634FKB.bigWig mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF502COR bed narrowPeak replicated peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF380MMQ, ENCFF700BJH, ENCFF897SJJ 1639225 ENCODE Processing Pipeline 896fe258e4c639823efe5ff608d75010 https://www.encodeproject.org/files/ENCFF502COR/@@download/ENCFF502COR.bed.gz mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF665KUX bigBed narrowPeak replicated peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF502COR 3358746 ENCODE Processing Pipeline a2566705548eaeeb2533fab5d0137e55 https://www.encodeproject.org/files/ENCFF665KUX/@@download/ENCFF665KUX.bigBed mm10-minimal archived insufficient read depth, control insufficient read depth ENCFF521BWP bam alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETQ, ENCFF018NEO 1216716292 ENCODE Processing Pipeline 37247190bda3ce03ecec4fb18315d740 https://www.encodeproject.org/files/ENCFF521BWP/@@download/ENCFF521BWP.bam mm10 released insufficient read depth, control insufficient read depth ENCFF654SFO bam unfiltered alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETQ, ENCFF018NEO 2145919763 ENCODE Processing Pipeline 7ceb49edd9ca8a37bc3c021259e1bc11 https://www.encodeproject.org/files/ENCFF654SFO/@@download/ENCFF654SFO.bam mm10 released insufficient read depth, control insufficient read depth ENCFF113FAJ bam unfiltered alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETP, ENCFF018NEO 1729027203 ENCODE Processing Pipeline d8cf438f6dfdb5032ff2f17f30c5ab0a https://www.encodeproject.org/files/ENCFF113FAJ/@@download/ENCFF113FAJ.bam mm10 released insufficient read depth, control insufficient read depth ENCFF956FZM bam alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETP, ENCFF018NEO 991308182 ENCODE Processing Pipeline 4881ca7a90dfc8380f50ebec724a533f https://www.encodeproject.org/files/ENCFF956FZM/@@download/ENCFF956FZM.bam mm10 released insufficient read depth, control insufficient read depth ENCFF683TBL bed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF521BWP, ENCFF956FZM 1573197 ENCODE Processing Pipeline 78bd18f9638d7b4c4bfdb7f37a3123ac https://www.encodeproject.org/files/ENCFF683TBL/@@download/ENCFF683TBL.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF026ZPI bigBed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF020PQG 3395817 ENCODE Processing Pipeline 6dc6ea43b78be2e19148f9f15f8eaba1 https://www.encodeproject.org/files/ENCFF026ZPI/@@download/ENCFF026ZPI.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF020PQG bed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF956FZM 1750319 ENCODE Processing Pipeline 85d4f5677c11b2256ea715965b5337a2 https://www.encodeproject.org/files/ENCFF020PQG/@@download/ENCFF020PQG.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF863ESV bed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF521BWP 1108504 ENCODE Processing Pipeline e98dcb46dd2a4f9a7bd545cdb26f9e3a https://www.encodeproject.org/files/ENCFF863ESV/@@download/ENCFF863ESV.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF699KTM bigBed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF863ESV 2205700 ENCODE Processing Pipeline 2ce3f5272a59f51582df4f56d0190d6d https://www.encodeproject.org/files/ENCFF699KTM/@@download/ENCFF699KTM.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF041STO bigBed narrowPeak peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF683TBL 3805717 ENCODE Processing Pipeline f7ebe55bae8e4f2265021d9eff89738d https://www.encodeproject.org/files/ENCFF041STO/@@download/ENCFF041STO.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF149YRZ bigWig signal p-value ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF956FZM 476280072 ENCODE Processing Pipeline db25e3e8a067d4e2c8499c9070346478 https://www.encodeproject.org/files/ENCFF149YRZ/@@download/ENCFF149YRZ.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF754EFX bigWig signal p-value ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF521BWP 287759049 ENCODE Processing Pipeline 9d061a0097c70c1390987d0731659183 https://www.encodeproject.org/files/ENCFF754EFX/@@download/ENCFF754EFX.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF466FMU bigWig signal p-value ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF521BWP, ENCFF956FZM 509388641 ENCODE Processing Pipeline f2bb4631ff0c580caa32e15c8a2c5750 https://www.encodeproject.org/files/ENCFF466FMU/@@download/ENCFF466FMU.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF206BJE bigWig fold change over control ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF956FZM 420149228 ENCODE Processing Pipeline 75dc1453a1a07655b0eb1d02d4a86b18 https://www.encodeproject.org/files/ENCFF206BJE/@@download/ENCFF206BJE.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF182JQB bigWig fold change over control ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF521BWP 404229668 ENCODE Processing Pipeline 851778facb4f20fbf78256faa08b1393 https://www.encodeproject.org/files/ENCFF182JQB/@@download/ENCFF182JQB.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF423EGY bigWig fold change over control ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF521BWP, ENCFF956FZM 742811991 ENCODE Processing Pipeline b25200c898949508bab3b9b3cebe70fd https://www.encodeproject.org/files/ENCFF423EGY/@@download/ENCFF423EGY.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF788EJN bed narrowPeak replicated peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF020PQG, ENCFF683TBL, ENCFF863ESV 1458610 ENCODE Processing Pipeline bfabf94888dc6081bb43961a5ebdf03e https://www.encodeproject.org/files/ENCFF788EJN/@@download/ENCFF788EJN.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF653LEE bigBed narrowPeak replicated peaks ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF788EJN 3052105 ENCODE Processing Pipeline bd62eed05fd59c26e67b183b1bcc3e8d https://www.encodeproject.org/files/ENCFF653LEE/@@download/ENCFF653LEE.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF107OCJ fastq reads ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1653419956 Bing Ren, UCSD cf0908c2c1b1f4e727a90a7930ae8fd3 SRA:SRR3652012 https://www.encodeproject.org/files/ENCFF107OCJ/@@download/ENCFF107OCJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF696TPX fastq reads ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 232417496 Bing Ren, UCSD 6d23a9e237dba243bf7bf56d60bbdcbe SRA:SRR3652010 https://www.encodeproject.org/files/ENCFF696TPX/@@download/ENCFF696TPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF092HXB fastq reads ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1512836195 Bing Ren, UCSD 6e17b50b834063a94c417799bd64d694 SRA:SRR3652011 https://www.encodeproject.org/files/ENCFF092HXB/@@download/ENCFF092HXB.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF234CSE bam alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF107OCJ, ENCFF806TVZ 1247591262 ENCODE Processing Pipeline 7e9c2b54ad48c9b62522b15fd4d17f87 https://www.encodeproject.org/files/ENCFF234CSE/@@download/ENCFF234CSE.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF520VMC bam alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF092HXB, ENCFF696TPX, ENCFF806TVZ 1053159333 ENCODE Processing Pipeline 010250a82617b5226b4bd650821a6e65 https://www.encodeproject.org/files/ENCFF520VMC/@@download/ENCFF520VMC.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF760FLE bed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF520VMC 974298 ENCODE Processing Pipeline f3fa646d65ed74ecbc36ca284dea0395 https://www.encodeproject.org/files/ENCFF760FLE/@@download/ENCFF760FLE.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF107SSA bed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF234CSE, ENCFF520VMC, ENCFF949WTQ 1019548 ENCODE Processing Pipeline 20788e4754f568920e8b952862ef68f4 https://www.encodeproject.org/files/ENCFF107SSA/@@download/ENCFF107SSA.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF017QZI bigBed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF953WGV 2629134 ENCODE Processing Pipeline 128cca40f2873564fa661ab3be21dfcf https://www.encodeproject.org/files/ENCFF017QZI/@@download/ENCFF017QZI.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF953WGV bed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF234CSE, ENCFF949WTQ 835751 ENCODE Processing Pipeline e5cdd7c9455f64b428265d934d016bef https://www.encodeproject.org/files/ENCFF953WGV/@@download/ENCFF953WGV.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF981SAX bigBed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF107SSA 3052443 ENCODE Processing Pipeline 141e6c9cdf6c718d82c72a62b2142c4d https://www.encodeproject.org/files/ENCFF981SAX/@@download/ENCFF981SAX.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF788BQT bigBed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF760FLE 3015290 ENCODE Processing Pipeline 92b2c7abed73a58c9873aa2d0d91bd13 https://www.encodeproject.org/files/ENCFF788BQT/@@download/ENCFF788BQT.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF904NJB bigWig signal p-value ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF520VMC 470516316 ENCODE Processing Pipeline 542513da585ad37487684d5d6eafb125 https://www.encodeproject.org/files/ENCFF904NJB/@@download/ENCFF904NJB.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF574LJK bigWig signal p-value ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF234CSE, ENCFF949WTQ 457492135 ENCODE Processing Pipeline 5acebd6de76376ed55a563fa7c7d59d8 https://www.encodeproject.org/files/ENCFF574LJK/@@download/ENCFF574LJK.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF114MWE bigWig fold change over control ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF520VMC 396518940 ENCODE Processing Pipeline f5e8d12e699df0d2c06dc21b0af00641 https://www.encodeproject.org/files/ENCFF114MWE/@@download/ENCFF114MWE.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF517NLC bigWig signal p-value ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF234CSE, ENCFF520VMC, ENCFF949WTQ 881056397 ENCODE Processing Pipeline b132487a37d6fac5ada55840f9f0ca0e https://www.encodeproject.org/files/ENCFF517NLC/@@download/ENCFF517NLC.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF284MQR bigWig fold change over control ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF234CSE, ENCFF949WTQ 476726572 ENCODE Processing Pipeline f4c6c4838f74a461b93ce0cdebf96a65 https://www.encodeproject.org/files/ENCFF284MQR/@@download/ENCFF284MQR.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF218XLQ bigWig fold change over control ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF234CSE, ENCFF520VMC, ENCFF949WTQ 929438603 ENCODE Processing Pipeline d784b80873605b025c8c377445aa144c https://www.encodeproject.org/files/ENCFF218XLQ/@@download/ENCFF218XLQ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF927JUC bigBed narrowPeak replicated peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF691JGO 2372527 ENCODE Processing Pipeline 58c75668db6c78ebd76184fb2d7596b6 https://www.encodeproject.org/files/ENCFF927JUC/@@download/ENCFF927JUC.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF691JGO bed narrowPeak replicated peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF107SSA, ENCFF760FLE, ENCFF953WGV 1078509 ENCODE Processing Pipeline 97510f08961593c2b868d415ded69f64 https://www.encodeproject.org/files/ENCFF691JGO/@@download/ENCFF691JGO.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF918HHY bam unfiltered alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF092HXB, ENCFF696TPX 1882995419 ENCODE Processing Pipeline 153d2147ea900c91f2a50dc0d2973586 https://www.encodeproject.org/files/ENCFF918HHY/@@download/ENCFF918HHY.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF316BXA bam unfiltered alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF107OCJ 1896779004 ENCODE Processing Pipeline 05853fbedc1d3cd8549770dab08c1d85 https://www.encodeproject.org/files/ENCFF316BXA/@@download/ENCFF316BXA.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF109ONM bam alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF107OCJ 1247375448 ENCODE Processing Pipeline a2d20102761e5633770acb200d45b27c https://www.encodeproject.org/files/ENCFF109ONM/@@download/ENCFF109ONM.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF535JYV bam alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF092HXB, ENCFF696TPX 1053014541 ENCODE Processing Pipeline 7673d1c2e45c05850424897e96435264 https://www.encodeproject.org/files/ENCFF535JYV/@@download/ENCFF535JYV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF607RLJ bed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF535JYV 1001896 ENCODE Processing Pipeline 2798b3886e397649a4ad7361d1ef3e5d https://www.encodeproject.org/files/ENCFF607RLJ/@@download/ENCFF607RLJ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF772FKL bed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF109ONM, ENCFF269JKO 851875 ENCODE Processing Pipeline cbd5280196c40da186e4d505a1f413ca https://www.encodeproject.org/files/ENCFF772FKL/@@download/ENCFF772FKL.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF713UYO bed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF109ONM, ENCFF269JKO, ENCFF535JYV 1075660 ENCODE Processing Pipeline eea766ae0d601497f363f0f8ed189008 https://www.encodeproject.org/files/ENCFF713UYO/@@download/ENCFF713UYO.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF887UIV bigBed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF607RLJ 3079043 ENCODE Processing Pipeline bd6926f5a37518713b027864b0709fdf https://www.encodeproject.org/files/ENCFF887UIV/@@download/ENCFF887UIV.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF172SPO bigBed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF772FKL 2666212 ENCODE Processing Pipeline 6ff8d88c0e0f596fad5001039b762edd https://www.encodeproject.org/files/ENCFF172SPO/@@download/ENCFF172SPO.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF906UTX bigBed narrowPeak peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF713UYO 3179271 ENCODE Processing Pipeline 29d7835f6f6ed32277c78080e34d6b07 https://www.encodeproject.org/files/ENCFF906UTX/@@download/ENCFF906UTX.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF570IWV bigWig signal p-value ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF535JYV 541537052 ENCODE Processing Pipeline c9f2bc6dbe637455e0788fbde9dec8fa https://www.encodeproject.org/files/ENCFF570IWV/@@download/ENCFF570IWV.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF125RCU bigWig signal p-value ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF109ONM, ENCFF269JKO 492949180 ENCODE Processing Pipeline c6923ba2e1bbc10160a616658a3dc8c5 https://www.encodeproject.org/files/ENCFF125RCU/@@download/ENCFF125RCU.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF672WZP bigWig signal p-value ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF109ONM, ENCFF269JKO, ENCFF535JYV 1075187200 ENCODE Processing Pipeline 1e1f50aae9ce13836b4036daf0f512dc https://www.encodeproject.org/files/ENCFF672WZP/@@download/ENCFF672WZP.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF352QVD bigWig fold change over control ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF535JYV 469279574 ENCODE Processing Pipeline 2fae5d4cc30af5d78103b35f118a3b22 https://www.encodeproject.org/files/ENCFF352QVD/@@download/ENCFF352QVD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF696LNZ bigWig fold change over control ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF109ONM, ENCFF269JKO 546614794 ENCODE Processing Pipeline 5adbb42ca78cf592665877552992a650 https://www.encodeproject.org/files/ENCFF696LNZ/@@download/ENCFF696LNZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF645JTI bigWig fold change over control ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF109ONM, ENCFF269JKO, ENCFF535JYV 1069551753 ENCODE Processing Pipeline fca95e92323e0d0adab28d539f8b6a6b https://www.encodeproject.org/files/ENCFF645JTI/@@download/ENCFF645JTI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF778XZE bed narrowPeak replicated peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF607RLJ, ENCFF713UYO, ENCFF772FKL 1089401 ENCODE Processing Pipeline 8eec7ac75e056c15217e14b247141588 https://www.encodeproject.org/files/ENCFF778XZE/@@download/ENCFF778XZE.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF277OEL bigBed narrowPeak replicated peaks ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF778XZE 2380971 ENCODE Processing Pipeline 971547e4fd62a09c80adcd2492554ad4 https://www.encodeproject.org/files/ENCFF277OEL/@@download/ENCFF277OEL.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001MUA bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MUJ 1666320429 Ross Hardison, PennState 167d1a00b98d9b8e6cb09bca8ac08256 https://www.encodeproject.org/files/ENCFF001MUA/@@download/ENCFF001MUA.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUB bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF001MUM 2605680219 Ross Hardison, PennState c045f4508e9b3a92889887d6f56f8552 https://www.encodeproject.org/files/ENCFF001MUB/@@download/ENCFF001MUB.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUD bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGJ 207098 Ross Hardison, PennState f71415ee2617723ec95433998f08ebe7 https://www.encodeproject.org/files/ENCFF001MUD/@@download/ENCFF001MUD.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUE bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MUP 5172747994 Ross Hardison, PennState 943093266d20b8e64f0e74a41a8f09fd https://www.encodeproject.org/files/ENCFF001MUE/@@download/ENCFF001MUE.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUF bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGK 193928 Ross Hardison, PennState defe7c0ef42ce987abcf8ffbaf8a8396 https://www.encodeproject.org/files/ENCFF001MUF/@@download/ENCFF001MUF.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUG bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGL 274202 Ross Hardison, PennState d5242feaa499d5ce794a973ba58e7660 https://www.encodeproject.org/files/ENCFF001MUG/@@download/ENCFF001MUG.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUH bigBed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 ENCFF001YGM 80492 Ross Hardison, PennState 160ffea96cd3d85f49b2a5313d475906 https://www.encodeproject.org/files/ENCFF001MUH/@@download/ENCFF001MUH.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUI bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 3242379942 Ross Hardison, PennState 187dee205c417543cf50e8d2468b233a https://www.encodeproject.org/files/ENCFF001MUI/@@download/ENCFF001MUI.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MUJ fastq reads ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1332709847 Ross Hardison, PennState 8f3fba6741cb9ec4940bc041c6a66a89 https://www.encodeproject.org/files/ENCFF001MUJ/@@download/ENCFF001MUJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MUT/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MUK bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5140287333 Ross Hardison, PennState 7d826ee50d8978afec0c44777a348df7 https://www.encodeproject.org/files/ENCFF001MUK/@@download/ENCFF001MUK.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MUL bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 3297152082 Ross Hardison, PennState e7c0cc440ced9256e57133d3591dc5cd https://www.encodeproject.org/files/ENCFF001MUL/@@download/ENCFF001MUL.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MUM fastq reads ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 45 single-ended 2132036352 Ross Hardison, PennState 3a75f406f665c722d94b844fe066015d https://www.encodeproject.org/files/ENCFF001MUM/@@download/ENCFF001MUM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths biological replicates with identical biosample ENCFF001MUO bigWig signal ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 5756066636 Ross Hardison, PennState 3ea8cb21860c568f58aae39336d13163 https://www.encodeproject.org/files/ENCFF001MUO/@@download/ENCFF001MUO.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MUP fastq reads ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 4519972158 Ross Hardison, PennState 633085f27acbb716c4629dd093383aac https://www.encodeproject.org/files/ENCFF001MUP/@@download/ENCFF001MUP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001YGJ bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 92230 Ross Hardison, PennState 927f35850aa29214979ad808c93b5239 https://www.encodeproject.org/files/ENCFF001YGJ/@@download/ENCFF001YGJ.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001YGK bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 86347 Ross Hardison, PennState 5fafb711ee5608de50da78a858cde800 https://www.encodeproject.org/files/ENCFF001YGK/@@download/ENCFF001YGK.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001YGL bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 155951 Ross Hardison, PennState 071833a24933da62dad6a33728bbebd7 https://www.encodeproject.org/files/ENCFF001YGL/@@download/ENCFF001YGL.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001YGM bed broadPeak peaks ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 22074 Ross Hardison, PennState 89d33336c5739f474e80d1e20d8ba2dd https://www.encodeproject.org/files/ENCFF001YGM/@@download/ENCFF001YGM.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF065JII bam unfiltered alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUJ, ENCFF018NEO 1760451903 ENCODE Processing Pipeline 77261495d33c1acb24522163161986f6 https://www.encodeproject.org/files/ENCFF065JII/@@download/ENCFF065JII.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF291XKM bam unfiltered alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUP, ENCFF018NEO 4523836477 ENCODE Processing Pipeline d9121d4a6626c44f9c41710806ee7634 https://www.encodeproject.org/files/ENCFF291XKM/@@download/ENCFF291XKM.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF313MIR bam unfiltered alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MUM, ENCFF018NEO 2597902706 ENCODE Processing Pipeline 6288d43fe9368e33bcf4bb5e9db62fb6 https://www.encodeproject.org/files/ENCFF313MIR/@@download/ENCFF313MIR.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF867QFT bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUJ, ENCFF018NEO 1218916952 ENCODE Processing Pipeline 9f544979cfd21ed50ecdc9ac1155cc22 https://www.encodeproject.org/files/ENCFF867QFT/@@download/ENCFF867QFT.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF994AUU bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MUM, ENCFF018NEO 1800337837 ENCODE Processing Pipeline 5cefe335e455c038ebb4841fe7cca782 https://www.encodeproject.org/files/ENCFF994AUU/@@download/ENCFF994AUU.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF364NET bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUP, ENCFF018NEO 2906150930 ENCODE Processing Pipeline ba2e07620ea0e634c7cf762d9fa780b8 https://www.encodeproject.org/files/ENCFF364NET/@@download/ENCFF364NET.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF002AJD fastq reads ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 681723553 Bing Ren, UCSD 5009b12e7940502757eaea7d685c3739 SRA:SRR3651330 https://www.encodeproject.org/files/ENCFF002AJD/@@download/ENCFF002AJD.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APV/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AJF fastq reads ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 858369366 Bing Ren, UCSD 8eeb93d78c833270e00397156eb696f7 SRA:SRR3651329 https://www.encodeproject.org/files/ENCFF002AJF/@@download/ENCFF002AJF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APU/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF480UYA bam alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJF, ENCFF806TVZ 882826440 ENCODE Processing Pipeline f8f4f18202dad53422a9775529356b75 https://www.encodeproject.org/files/ENCFF480UYA/@@download/ENCFF480UYA.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF564ZSR fastq reads ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 192365423 Bing Ren, UCSD 66024dc015481b342e9a1ef3adbd1e88 SRA:SRR3651331 https://www.encodeproject.org/files/ENCFF564ZSR/@@download/ENCFF564ZSR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APV/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF725TOW fastq reads ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 3 50 single-ended 515799525 Bing Ren, UCSD 0df100fc52bcd210acb7609b202e3c2b SRA:SRR3651332 https://www.encodeproject.org/files/ENCFF725TOW/@@download/ENCFF725TOW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APV/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF692IAU bam alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJD, ENCFF564ZSR, ENCFF725TOW, ENCFF806TVZ 1441082346 ENCODE Processing Pipeline 13c3c07bb6b5997cd615fc5824b139a5 https://www.encodeproject.org/files/ENCFF692IAU/@@download/ENCFF692IAU.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF327AHX bed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF480UYA 3116964 ENCODE Processing Pipeline f4c6a2f448395c4226c0ce2d83358766 https://www.encodeproject.org/files/ENCFF327AHX/@@download/ENCFF327AHX.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF068JKD bed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF480UYA, ENCFF692IAU 3175885 ENCODE Processing Pipeline cfcf54968273b4ac9ee20123ef334021 https://www.encodeproject.org/files/ENCFF068JKD/@@download/ENCFF068JKD.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF612AEW bigBed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF068JKD 8321367 ENCODE Processing Pipeline b68c9fe24ccc6753839c98218a637bca https://www.encodeproject.org/files/ENCFF612AEW/@@download/ENCFF612AEW.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF767LIW bed narrowPeak replicated peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF068JKD, ENCFF128SSX, ENCFF327AHX 2769971 ENCODE Processing Pipeline cda6878963c728a82022dc0dda579708 https://www.encodeproject.org/files/ENCFF767LIW/@@download/ENCFF767LIW.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF128SSX bed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF692IAU 3489570 ENCODE Processing Pipeline 3d705571521fe6a10f8ae8e9eb336bb9 https://www.encodeproject.org/files/ENCFF128SSX/@@download/ENCFF128SSX.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF080UPF bigBed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF128SSX 9037602 ENCODE Processing Pipeline 727a8d1334c1b8ac8471e784e1e7075a https://www.encodeproject.org/files/ENCFF080UPF/@@download/ENCFF080UPF.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF979GEN bigWig signal p-value ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF692IAU 456035869 ENCODE Processing Pipeline af6b962e8931dcc5629f6a93ac7628ce https://www.encodeproject.org/files/ENCFF979GEN/@@download/ENCFF979GEN.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF821BPC bigWig signal p-value ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF480UYA, ENCFF692IAU 814467470 ENCODE Processing Pipeline b9f78eb34af8e0a309445fec5767724e https://www.encodeproject.org/files/ENCFF821BPC/@@download/ENCFF821BPC.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF145KAS bigWig fold change over control ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF692IAU 586244376 ENCODE Processing Pipeline ca51b35da5be4cc67cd8305f2649423e https://www.encodeproject.org/files/ENCFF145KAS/@@download/ENCFF145KAS.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF337DHW bigWig fold change over control ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF480UYA, ENCFF692IAU 859382847 ENCODE Processing Pipeline eac2fcdf50697536ac1aaaadfe3ef07c https://www.encodeproject.org/files/ENCFF337DHW/@@download/ENCFF337DHW.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF334SFZ bigBed narrowPeak replicated peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF767LIW 5844291 ENCODE Processing Pipeline 953e291dfc8af5ba546bc01ff4699144 https://www.encodeproject.org/files/ENCFF334SFZ/@@download/ENCFF334SFZ.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF840ZIU bam unfiltered alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJF, ENCFF018NEO 1135207258 ENCODE Processing Pipeline c00b17a14bd182aec0e98c15ec503a86 https://www.encodeproject.org/files/ENCFF840ZIU/@@download/ENCFF840ZIU.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF642EEK bam unfiltered alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJD, ENCFF018NEO, ENCFF564ZSR, ENCFF725TOW 1613684275 ENCODE Processing Pipeline 029b3255f1ea5bc29124dd83d2d721da https://www.encodeproject.org/files/ENCFF642EEK/@@download/ENCFF642EEK.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF073OZT bam alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJF, ENCFF018NEO 882645702 ENCODE Processing Pipeline b36d90b0ab810539cb11a77b3241af23 https://www.encodeproject.org/files/ENCFF073OZT/@@download/ENCFF073OZT.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF940TTQ bam alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJD, ENCFF018NEO, ENCFF564ZSR, ENCFF725TOW 1252363075 ENCODE Processing Pipeline a9c81ff8a7172969e5f602ac9a743cca https://www.encodeproject.org/files/ENCFF940TTQ/@@download/ENCFF940TTQ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF554XLV bigBed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF766VEF 4818660 ENCODE Processing Pipeline c4e59eacad408659dc361d575bcfc533 https://www.encodeproject.org/files/ENCFF554XLV/@@download/ENCFF554XLV.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF766VEF bed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF073OZT, ENCFF396CVK 2266389 ENCODE Processing Pipeline f776102a4e089804364b652fb5655117 https://www.encodeproject.org/files/ENCFF766VEF/@@download/ENCFF766VEF.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF368YVI bigWig signal p-value ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF073OZT, ENCFF396CVK 407602367 ENCODE Processing Pipeline bc0625093c010b4c7c3019b94fe1d6ac https://www.encodeproject.org/files/ENCFF368YVI/@@download/ENCFF368YVI.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF447FND bigWig fold change over control ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF073OZT, ENCFF396CVK 377428329 ENCODE Processing Pipeline 2ff58203674bb2223c15df59ab7f5572 https://www.encodeproject.org/files/ENCFF447FND/@@download/ENCFF447FND.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF907IXE bed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073OZT, ENCFF396CVK, ENCFF506NSJ, ENCFF940TTQ 3191170 ENCODE Processing Pipeline 581d3b578223888e8210b2fe9cb611f9 https://www.encodeproject.org/files/ENCFF907IXE/@@download/ENCFF907IXE.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF938VQX bigBed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF907IXE 8359960 ENCODE Processing Pipeline db759792ad10c435f87474d323178921 https://www.encodeproject.org/files/ENCFF938VQX/@@download/ENCFF938VQX.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF911LCC bigBed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066UTC 9111834 ENCODE Processing Pipeline 072c08a273f614973ba34e87865fb0ea https://www.encodeproject.org/files/ENCFF911LCC/@@download/ENCFF911LCC.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF066UTC bed narrowPeak peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF940TTQ 3479063 ENCODE Processing Pipeline 394d07beb40f62d344aecab38a75eb71 https://www.encodeproject.org/files/ENCFF066UTC/@@download/ENCFF066UTC.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF396FJG bigWig signal p-value ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073OZT, ENCFF396CVK, ENCFF506NSJ, ENCFF940TTQ 797321956 ENCODE Processing Pipeline 43dee1c0b60e0373b572c43eafb13733 https://www.encodeproject.org/files/ENCFF396FJG/@@download/ENCFF396FJG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF144CUM bigWig signal p-value ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF940TTQ 545734215 ENCODE Processing Pipeline 9a1c4c13b4ef14054a4d64a80d27ba2c https://www.encodeproject.org/files/ENCFF144CUM/@@download/ENCFF144CUM.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF878SVM bigWig fold change over control ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF940TTQ 584520307 ENCODE Processing Pipeline ba374c7f2ea049e05bb620d94b512d61 https://www.encodeproject.org/files/ENCFF878SVM/@@download/ENCFF878SVM.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF730VFB bigWig fold change over control ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073OZT, ENCFF396CVK, ENCFF506NSJ, ENCFF940TTQ 845838371 ENCODE Processing Pipeline cca956acf769a6783f8643dd7697cd1d https://www.encodeproject.org/files/ENCFF730VFB/@@download/ENCFF730VFB.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF342XGS bed narrowPeak replicated peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066UTC, ENCFF766VEF, ENCFF907IXE 2567943 ENCODE Processing Pipeline 5ff5b1d35a2479283431e214d8c177d5 https://www.encodeproject.org/files/ENCFF342XGS/@@download/ENCFF342XGS.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF805HMA bigBed narrowPeak replicated peaks ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF342XGS 5471159 ENCODE Processing Pipeline e0132a6fb76a417af92270bde1be01ea https://www.encodeproject.org/files/ENCFF805HMA/@@download/ENCFF805HMA.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF144XFB fastq reads ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3779262304 Bing Ren, UCSD 29a1b86aa096fe6d363de1da1623149b SRA:SRR3651886 https://www.encodeproject.org/files/ENCFF144XFB/@@download/ENCFF144XFB.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released inconsistent platforms ENCFF962NKI fastq reads ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3797624023 Bing Ren, UCSD dd5f9e5d12860da3a8b03186abf615a0 SRA:SRR3651887 https://www.encodeproject.org/files/ENCFF962NKI/@@download/ENCFF962NKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released inconsistent platforms ENCFF940MRH bam alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF144XFB, ENCFF806TVZ 3358101047 ENCODE Processing Pipeline 8a261e229bf2d0c243ec07bb690bf296 https://www.encodeproject.org/files/ENCFF940MRH/@@download/ENCFF940MRH.bam mm10-minimal archived inconsistent platforms ENCFF702CKO bam alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF962NKI 3356670173 ENCODE Processing Pipeline 4893041641f01a3224e209ef1fdebae6 https://www.encodeproject.org/files/ENCFF702CKO/@@download/ENCFF702CKO.bam mm10-minimal archived inconsistent platforms ENCFF806IWK bigBed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF542YPK 9168085 ENCODE Processing Pipeline 81663d963b81116b29040f07daf81017 https://www.encodeproject.org/files/ENCFF806IWK/@@download/ENCFF806IWK.bigBed mm10-minimal archived inconsistent platforms ENCFF560MTZ bed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF702CKO, ENCFF940MRH 3318428 ENCODE Processing Pipeline 4b676819e83bf40c3f017a6cbe71fd56 https://www.encodeproject.org/files/ENCFF560MTZ/@@download/ENCFF560MTZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF542YPK bed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF702CKO 3421789 ENCODE Processing Pipeline b4e82e8f0ea24af5a49edca75b8ebf39 https://www.encodeproject.org/files/ENCFF542YPK/@@download/ENCFF542YPK.bed.gz mm10-minimal archived inconsistent platforms ENCFF429JSO bigBed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF379LPC 9326874 ENCODE Processing Pipeline e26a6ba0b967eb3d1964e637002a22fc https://www.encodeproject.org/files/ENCFF429JSO/@@download/ENCFF429JSO.bigBed mm10-minimal archived inconsistent platforms ENCFF379LPC bed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF940MRH 3496138 ENCODE Processing Pipeline b58254ca9dec790ad3b8d7750727747a https://www.encodeproject.org/files/ENCFF379LPC/@@download/ENCFF379LPC.bed.gz mm10-minimal archived inconsistent platforms ENCFF640CGW bigBed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF560MTZ 8835898 ENCODE Processing Pipeline 00dec7739a9d8d621740c8c027f94b1d https://www.encodeproject.org/files/ENCFF640CGW/@@download/ENCFF640CGW.bigBed mm10-minimal archived inconsistent platforms ENCFF648AOZ bigWig signal p-value ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF702CKO 1034154050 ENCODE Processing Pipeline e473a585af30854b625d4797e45d4aa0 https://www.encodeproject.org/files/ENCFF648AOZ/@@download/ENCFF648AOZ.bigWig mm10-minimal archived inconsistent platforms ENCFF386ELP bigWig signal p-value ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF940MRH 905291876 ENCODE Processing Pipeline e6435bed959434f0a07f1ca801d55b10 https://www.encodeproject.org/files/ENCFF386ELP/@@download/ENCFF386ELP.bigWig mm10-minimal archived inconsistent platforms ENCFF531KFF bigWig signal p-value ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF702CKO, ENCFF940MRH 1427729860 ENCODE Processing Pipeline def71db1f40b8ae563b80ccb9dcc0199 https://www.encodeproject.org/files/ENCFF531KFF/@@download/ENCFF531KFF.bigWig mm10-minimal archived inconsistent platforms ENCFF637PCT bigWig fold change over control ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF940MRH 1256947279 ENCODE Processing Pipeline 48abe4ab3552a79ad62de758b6cbd57b https://www.encodeproject.org/files/ENCFF637PCT/@@download/ENCFF637PCT.bigWig mm10-minimal archived inconsistent platforms ENCFF705DBV bigWig fold change over control ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF702CKO 1256426993 ENCODE Processing Pipeline ee6a1001bea55cd763a61c94bca67a7a https://www.encodeproject.org/files/ENCFF705DBV/@@download/ENCFF705DBV.bigWig mm10-minimal archived inconsistent platforms ENCFF441BWT bigWig fold change over control ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF702CKO, ENCFF940MRH 1800770452 ENCODE Processing Pipeline 8e6fbe161a9c7634ac297739400d7464 https://www.encodeproject.org/files/ENCFF441BWT/@@download/ENCFF441BWT.bigWig mm10-minimal archived inconsistent platforms ENCFF423YWU bigBed narrowPeak replicated peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF823LCO 7148878 ENCODE Processing Pipeline 683756655b296e7dafaeb6510d29cc9e https://www.encodeproject.org/files/ENCFF423YWU/@@download/ENCFF423YWU.bigBed mm10-minimal archived inconsistent platforms ENCFF823LCO bed narrowPeak replicated peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF379LPC, ENCFF542YPK, ENCFF560MTZ 3665557 ENCODE Processing Pipeline 67662b968a25ed5a8c125ba54e4de3f9 https://www.encodeproject.org/files/ENCFF823LCO/@@download/ENCFF823LCO.bed.gz mm10-minimal archived inconsistent platforms ENCFF999UAP bam unfiltered alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF962NKI 4478554170 ENCODE Processing Pipeline 85b0cf701a42385a96bd3d67b32ac5bc https://www.encodeproject.org/files/ENCFF999UAP/@@download/ENCFF999UAP.bam mm10 released inconsistent platforms ENCFF630HXU bam unfiltered alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF144XFB 4454437978 ENCODE Processing Pipeline f97f8c13b309ad0f2dffc8c4c1dc057a https://www.encodeproject.org/files/ENCFF630HXU/@@download/ENCFF630HXU.bam mm10 released inconsistent platforms ENCFF839EWF bam alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF962NKI 3356001465 ENCODE Processing Pipeline 7a86f1033956d054df6bb9b8ef868f71 https://www.encodeproject.org/files/ENCFF839EWF/@@download/ENCFF839EWF.bam mm10 released inconsistent platforms ENCFF156UJE bam alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF144XFB 3357440978 ENCODE Processing Pipeline b1864f56f48e2437204ce1de2f18c015 https://www.encodeproject.org/files/ENCFF156UJE/@@download/ENCFF156UJE.bam mm10 released inconsistent platforms ENCFF277SFW bed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF642FOT, ENCFF839EWF 3542729 ENCODE Processing Pipeline 8c186ef7e8fc4be023658e7c1d6cb35d https://www.encodeproject.org/files/ENCFF277SFW/@@download/ENCFF277SFW.bed.gz mm10 released inconsistent platforms ENCFF978WZJ bed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF156UJE, ENCFF642FOT 2673779 ENCODE Processing Pipeline 4613bb20862bfa063b3d120ce3f791f7 https://www.encodeproject.org/files/ENCFF978WZJ/@@download/ENCFF978WZJ.bed.gz mm10 released inconsistent platforms ENCFF831HBQ bed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF156UJE, ENCFF487AIV, ENCFF642FOT, ENCFF839EWF 3499637 ENCODE Processing Pipeline 81899f115a54c5ff5f3edf452bfca236 https://www.encodeproject.org/files/ENCFF831HBQ/@@download/ENCFF831HBQ.bed.gz mm10 released inconsistent platforms ENCFF901OSD bigBed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF978WZJ 7224780 ENCODE Processing Pipeline 40b07e969d120828398ebba2b70f4200 https://www.encodeproject.org/files/ENCFF901OSD/@@download/ENCFF901OSD.bigBed mm10 released inconsistent platforms ENCFF007FNH bigBed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF277SFW 9475170 ENCODE Processing Pipeline 9e7b74bcfd5b5265151b1260001db3c5 https://www.encodeproject.org/files/ENCFF007FNH/@@download/ENCFF007FNH.bigBed mm10 released inconsistent platforms ENCFF644GBV bigBed narrowPeak peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF831HBQ 9321470 ENCODE Processing Pipeline 873b616c603575f1c8a5e053f150214b https://www.encodeproject.org/files/ENCFF644GBV/@@download/ENCFF644GBV.bigBed mm10 released inconsistent platforms ENCFF573KAH bigWig signal p-value ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF642FOT, ENCFF839EWF 1327485062 ENCODE Processing Pipeline 8af01a34c279bc06408aa3aa62dacf9c https://www.encodeproject.org/files/ENCFF573KAH/@@download/ENCFF573KAH.bigWig mm10 released inconsistent platforms ENCFF822NIY bigWig signal p-value ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF156UJE, ENCFF642FOT 861660537 ENCODE Processing Pipeline 51743d20e13be034d23d8c888cd82ddb https://www.encodeproject.org/files/ENCFF822NIY/@@download/ENCFF822NIY.bigWig mm10 released inconsistent platforms ENCFF661OMB bigWig signal p-value ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF156UJE, ENCFF487AIV, ENCFF642FOT, ENCFF839EWF 1610418473 ENCODE Processing Pipeline e3074b785a4013b42620d1c3a7bc049a https://www.encodeproject.org/files/ENCFF661OMB/@@download/ENCFF661OMB.bigWig mm10 released inconsistent platforms ENCFF021ILY bigWig fold change over control ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF642FOT, ENCFF839EWF 1328861139 ENCODE Processing Pipeline 480f0421edd135e785dffdf25c449f25 https://www.encodeproject.org/files/ENCFF021ILY/@@download/ENCFF021ILY.bigWig mm10 released inconsistent platforms ENCFF513VWX bigWig fold change over control ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF156UJE, ENCFF642FOT 1033037095 ENCODE Processing Pipeline 1e1f903e3244c5995194cc26f1fdab95 https://www.encodeproject.org/files/ENCFF513VWX/@@download/ENCFF513VWX.bigWig mm10 released inconsistent platforms ENCFF816ESX bigWig fold change over control ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF156UJE, ENCFF487AIV, ENCFF642FOT, ENCFF839EWF 1867077900 ENCODE Processing Pipeline bb9eaaeb99775c817505b19d8b1fa8d1 https://www.encodeproject.org/files/ENCFF816ESX/@@download/ENCFF816ESX.bigWig mm10 released inconsistent platforms ENCFF813HGL bed narrowPeak replicated peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF277SFW, ENCFF831HBQ, ENCFF978WZJ 3593867 ENCODE Processing Pipeline 6324ca08843caa65fe503a54e476ca8a https://www.encodeproject.org/files/ENCFF813HGL/@@download/ENCFF813HGL.bed.gz mm10 released inconsistent platforms ENCFF410JXD bigBed narrowPeak replicated peaks ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF813HGL 6948257 ENCODE Processing Pipeline 020c3aa922d59cfca562e8220df8773c https://www.encodeproject.org/files/ENCFF410JXD/@@download/ENCFF410JXD.bigBed mm10 released inconsistent platforms ENCFF001NVC bigWig signal ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NUV, ENCFF001NUX 133035255 Michael Snyder, Stanford 940f6159a01ba428063e0b68286a9af2 https://www.encodeproject.org/files/ENCFF001NVC/@@download/ENCFF001NVC.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NUV bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NUY 402278342 Michael Snyder, Stanford f038cb06024c1c7a32af8919677bab1c https://www.encodeproject.org/files/ENCFF001NUV/@@download/ENCFF001NUV.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NUW bigBed narrowPeak peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJQ 125484 Michael Snyder, Stanford 4b35f8fd79e2ae5bf777691d839569bd https://www.encodeproject.org/files/ENCFF001NUW/@@download/ENCFF001NUW.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NUX bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NVA 380752912 Michael Snyder, Stanford 4ac23b21f4ba6753ae00bd88bd81515c https://www.encodeproject.org/files/ENCFF001NUX/@@download/ENCFF001NUX.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NUY fastq reads ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 721187461 Michael Snyder, Stanford 8e58d34984e462f782f7334eadce110a https://www.encodeproject.org/files/ENCFF001NUY/@@download/ENCFF001NUY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTS/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NVA fastq reads ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 747614593 Michael Snyder, Stanford bdb3d4e602ca12892be793f30df605f0 https://www.encodeproject.org/files/ENCFF001NVA/@@download/ENCFF001NVA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTU/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001YJQ bed narrowPeak peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NUV, ENCFF001NUX 28516 Michael Snyder, Stanford c27af31095366fda83e818f7b2d82f20 https://www.encodeproject.org/files/ENCFF001YJQ/@@download/ENCFF001YJQ.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF536XZS bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NUY, ENCFF018NEO 558104343 ENCODE Processing Pipeline 2a01744a664a8d90ec6baf5379130353 https://www.encodeproject.org/files/ENCFF536XZS/@@download/ENCFF536XZS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF859PAZ bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NVA, ENCFF018NEO 487219227 ENCODE Processing Pipeline db92754b42ace5ad7077962b9276d5ad https://www.encodeproject.org/files/ENCFF859PAZ/@@download/ENCFF859PAZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF705BAU bam unfiltered alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NVA, ENCFF018NEO 830219682 ENCODE Processing Pipeline 1b472c0a286fd4b3458a45c6fbcdee5e https://www.encodeproject.org/files/ENCFF705BAU/@@download/ENCFF705BAU.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF822OHA bam unfiltered alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NUY, ENCFF018NEO 836007413 ENCODE Processing Pipeline d7ef77d3422c41d1dbf75dbd39ff6c16 https://www.encodeproject.org/files/ENCFF822OHA/@@download/ENCFF822OHA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF337CWB bigWig signal p-value ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF859PAZ 322113871 ENCODE Processing Pipeline 3b005e1723c006ccdc3ad4c742445451 https://www.encodeproject.org/files/ENCFF337CWB/@@download/ENCFF337CWB.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF290IMJ bigWig signal p-value ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS, ENCFF859PAZ 432916003 ENCODE Processing Pipeline 8a0312ebf198a818e9e39fc596728b7b https://www.encodeproject.org/files/ENCFF290IMJ/@@download/ENCFF290IMJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF078GZY bigWig signal p-value ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS 367718383 ENCODE Processing Pipeline 98903fa34bee0e468e40496f149a04f7 https://www.encodeproject.org/files/ENCFF078GZY/@@download/ENCFF078GZY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF396BBC bigWig fold change over control ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS 332891496 ENCODE Processing Pipeline 04d8bb10dbbfe4de0456a000c11d4443 https://www.encodeproject.org/files/ENCFF396BBC/@@download/ENCFF396BBC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF015TNW bigWig fold change over control ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF859PAZ 304961223 ENCODE Processing Pipeline cb5ee9ac77b632046b875ce36530568f https://www.encodeproject.org/files/ENCFF015TNW/@@download/ENCFF015TNW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF369XQN bigWig fold change over control ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS, ENCFF859PAZ 513113285 ENCODE Processing Pipeline 5feeb63a9a0fefdd79e0b69829e5cf67 https://www.encodeproject.org/files/ENCFF369XQN/@@download/ENCFF369XQN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF247AEB bed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS 4406357 ENCODE Processing Pipeline b2dbe258ed1efa7029e6d93c67628c12 https://www.encodeproject.org/files/ENCFF247AEB/@@download/ENCFF247AEB.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF344XYS bed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF859PAZ 3832278 ENCODE Processing Pipeline 296db0802c84787435d61a484eec6fd9 https://www.encodeproject.org/files/ENCFF344XYS/@@download/ENCFF344XYS.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF448JBQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF247AEB 10608282 ENCODE Processing Pipeline 228781d5bce750aeb04be3de2376bcf9 https://www.encodeproject.org/files/ENCFF448JBQ/@@download/ENCFF448JBQ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF150XOB bed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF536XZS, ENCFF859PAZ 4796196 ENCODE Processing Pipeline 0034d460f80b4eb1cc16128ffbc20476 https://www.encodeproject.org/files/ENCFF150XOB/@@download/ENCFF150XOB.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF621KYH bigBed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF344XYS 8192086 ENCODE Processing Pipeline f899991ab6400a3773285d081098ba48 https://www.encodeproject.org/files/ENCFF621KYH/@@download/ENCFF621KYH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF452SZA bigBed narrowPeak peaks and background as input for IDR ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF150XOB 11205233 ENCODE Processing Pipeline 28cff93e490e6cdfb12aa70812ef94a0 https://www.encodeproject.org/files/ENCFF452SZA/@@download/ENCFF452SZA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF579VPA bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF646SRQ 127565 ENCODE Processing Pipeline 9531a06f4dc6f0c1bea78495ec85f62c https://www.encodeproject.org/files/ENCFF579VPA/@@download/ENCFF579VPA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF646SRQ bed narrowPeak conservative idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF150XOB, ENCFF247AEB, ENCFF344XYS, ENCFF547MET 43621 ENCODE Processing Pipeline 7f76a0e9a2c2d0addcf1503618796488 https://www.encodeproject.org/files/ENCFF646SRQ/@@download/ENCFF646SRQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF006XAF bed narrowPeak optimal idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF150XOB, ENCFF247AEB, ENCFF344XYS, ENCFF547MET 45946 ENCODE Processing Pipeline 795bf3ba1591336cc40547541f118ee2 https://www.encodeproject.org/files/ENCFF006XAF/@@download/ENCFF006XAF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF869PJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF006XAF 131028 ENCODE Processing Pipeline f61ca4a34471ef1e8934ee6926f3f6cd https://www.encodeproject.org/files/ENCFF869PJO/@@download/ENCFF869PJO.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF671VKD fastq reads ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 1200033178 Richard Myers, HAIB 24fd908cdf923a562145a19996f09203 SRA:SRR5111591 https://www.encodeproject.org/files/ENCFF671VKD/@@download/ENCFF671VKD.fastq.gz Illumina HiSeq 2000 /files/ENCFF172HFY/ released antibody characterized with exemption biological replicates with identical biosample ENCFF682HTS fastq reads ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1094098855 Richard Myers, HAIB 75a7dc10b54e80bb12b6cfe54656c72b SRA:SRR5111590 https://www.encodeproject.org/files/ENCFF682HTS/@@download/ENCFF682HTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF329PLP/ released antibody characterized with exemption biological replicates with identical biosample ENCFF562ESN bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF671VKD, ENCFF806TVZ 1000695237 ENCODE Processing Pipeline d279288f7f4b37aad3052b623321ff7b https://www.encodeproject.org/files/ENCFF562ESN/@@download/ENCFF562ESN.bam mm10-minimal archived antibody characterized with exemption biological replicates with identical biosample ENCFF645XHV bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF682HTS, ENCFF806TVZ 913030596 ENCODE Processing Pipeline 00efa81f30cca3d7497d73dbc3a362bf https://www.encodeproject.org/files/ENCFF645XHV/@@download/ENCFF645XHV.bam mm10-minimal archived antibody characterized with exemption biological replicates with identical biosample ENCFF157PZF bam unfiltered alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF671VKD 1329016858 ENCODE Processing Pipeline de4f8fed1b6c8ff2dbb3119b9fd1c7a0 https://www.encodeproject.org/files/ENCFF157PZF/@@download/ENCFF157PZF.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF960WVG bam unfiltered alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF682HTS 1212914464 ENCODE Processing Pipeline 3d0baf4619cf8ac640d7a1266e7218ff https://www.encodeproject.org/files/ENCFF960WVG/@@download/ENCFF960WVG.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF555JZF bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF682HTS 912899218 ENCODE Processing Pipeline df09e1404dd1ce3a4c0b40dbd7a5778c https://www.encodeproject.org/files/ENCFF555JZF/@@download/ENCFF555JZF.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF117NUU bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF671VKD 1000565370 ENCODE Processing Pipeline 75f917563cd9668f886f79fd94372d67 https://www.encodeproject.org/files/ENCFF117NUU/@@download/ENCFF117NUU.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF367QRS bigWig signal p-value ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF132KBH, ENCFF555JZF 459290049 ENCODE Processing Pipeline 04a456ceeea7988395cbeca6d09ced63 https://www.encodeproject.org/files/ENCFF367QRS/@@download/ENCFF367QRS.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF224EQW bigWig signal p-value ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF117NUU, ENCFF132KBH, ENCFF604KPS 638325637 ENCODE Processing Pipeline 43127cdec1a617a34ee320d79e970612 https://www.encodeproject.org/files/ENCFF224EQW/@@download/ENCFF224EQW.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF749SKR bigWig fold change over control ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF132KBH, ENCFF555JZF 446628985 ENCODE Processing Pipeline 1f1118b1e7c35e822f6031d7228704b9 https://www.encodeproject.org/files/ENCFF749SKR/@@download/ENCFF749SKR.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF132XVI bigWig fold change over control ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF117NUU, ENCFF132KBH, ENCFF604KPS 618160330 ENCODE Processing Pipeline db65e9a993dc688bbbfca26a85ff4500 https://www.encodeproject.org/files/ENCFF132XVI/@@download/ENCFF132XVI.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF625DQU bigWig signal p-value ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF117NUU, ENCFF132KBH, ENCFF555JZF, ENCFF604KPS 626739413 ENCODE Processing Pipeline 67cb96dca907a9b021a2d56973baa7a8 https://www.encodeproject.org/files/ENCFF625DQU/@@download/ENCFF625DQU.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF665UTM bigWig fold change over control ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF117NUU, ENCFF132KBH, ENCFF555JZF, ENCFF604KPS 866060314 ENCODE Processing Pipeline 38ff60b1687be9e44daaa3140f02446b https://www.encodeproject.org/files/ENCFF665UTM/@@download/ENCFF665UTM.bigWig mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF487STG bed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF132KBH, ENCFF555JZF 5885251 ENCODE Processing Pipeline ba1cfbd4776880d28287e30471f3b084 https://www.encodeproject.org/files/ENCFF487STG/@@download/ENCFF487STG.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF477NPU bed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF117NUU, ENCFF132KBH, ENCFF604KPS 6308990 ENCODE Processing Pipeline 217089477c7b47ea32df185d967e16ca https://www.encodeproject.org/files/ENCFF477NPU/@@download/ENCFF477NPU.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF425IFM bigBed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF487STG 13336343 ENCODE Processing Pipeline f704a94030db399d42c3d3578bf79c69 https://www.encodeproject.org/files/ENCFF425IFM/@@download/ENCFF425IFM.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF687GFY bed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF117NUU, ENCFF132KBH, ENCFF555JZF, ENCFF604KPS 7059194 ENCODE Processing Pipeline 9c64091e5425d06f02ac68b0f7a42cdc https://www.encodeproject.org/files/ENCFF687GFY/@@download/ENCFF687GFY.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF009IYR bigBed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF477NPU 13229745 ENCODE Processing Pipeline 042953e55f4f13bb375f9df3d8cc0656 https://www.encodeproject.org/files/ENCFF009IYR/@@download/ENCFF009IYR.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF117KAN bigBed narrowPeak peaks and background as input for IDR ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF687GFY 13351431 ENCODE Processing Pipeline 7e145b26cfae52b51e8cbff4df20a7dd https://www.encodeproject.org/files/ENCFF117KAN/@@download/ENCFF117KAN.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF831IWD bed narrowPeak conservative idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF477NPU, ENCFF487STG, ENCFF547MET, ENCFF687GFY 133729 ENCODE Processing Pipeline 25e30b9624462be3f0a8f5f7135a3966 https://www.encodeproject.org/files/ENCFF831IWD/@@download/ENCFF831IWD.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF120DVW bigBed narrowPeak optimal idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF132DDY 351628 ENCODE Processing Pipeline 3ab198cbfcbf3da3cf4a7e755900f53a https://www.encodeproject.org/files/ENCFF120DVW/@@download/ENCFF120DVW.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF132DDY bed narrowPeak optimal idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF477NPU, ENCFF487STG, ENCFF547MET, ENCFF687GFY 147487 ENCODE Processing Pipeline b37b7917a9265733283388c8502c8b01 https://www.encodeproject.org/files/ENCFF132DDY/@@download/ENCFF132DDY.bed.gz mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF564QTS bigBed narrowPeak conservative idr thresholded peaks ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF831IWD 328559 ENCODE Processing Pipeline d02c8da32a261eb93d0caab0a1032113 https://www.encodeproject.org/files/ENCFF564QTS/@@download/ENCFF564QTS.bigBed mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF001LMM bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LMX 571365700 Bing Ren, UCSD 3201f50c481ef41d5cd2a95b775dfc9b https://www.encodeproject.org/files/ENCFF001LMM/@@download/ENCFF001LMM.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001LMN bigBed broadPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAM 705546 Bing Ren, UCSD 5fa8663c9f8f690c142bbeea88906aa7 https://www.encodeproject.org/files/ENCFF001LMN/@@download/ENCFF001LMN.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001LMO bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LMV 755964667 Bing Ren, UCSD bca9d37eeb16806ba14be507d7b0cb60 https://www.encodeproject.org/files/ENCFF001LMO/@@download/ENCFF001LMO.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001LMQ bigWig signal ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LMM, ENCFF001LMO 77491367 Bing Ren, UCSD 2ba36ec3997ea404d2ef4713ad9ab58f https://www.encodeproject.org/files/ENCFF001LMQ/@@download/ENCFF001LMQ.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001LMV fastq reads ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 873415933 Bing Ren, UCSD 97c751e2bffc3ab4e4321282863e9c86 https://www.encodeproject.org/files/ENCFF001LMV/@@download/ENCFF001LMV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNY/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001LMX fastq reads ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 831603429 Bing Ren, UCSD 2997f0b24bdcac54ec02ac864f1d8f4b https://www.encodeproject.org/files/ENCFF001LMX/@@download/ENCFF001LMX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNX/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001YAM bed broadPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LMM, ENCFF001LMO 424207 Bing Ren, UCSD 67077251a4a8d3a6601eccce4cb8b7f9 https://www.encodeproject.org/files/ENCFF001YAM/@@download/ENCFF001YAM.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF709TQG bam unfiltered alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 962568989 ENCODE Processing Pipeline ea930540fcb70a48728f6c1b5b765010 https://www.encodeproject.org/files/ENCFF709TQG/@@download/ENCFF709TQG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF516FZI bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 519238766 ENCODE Processing Pipeline 6142c7e75e870d7c8f68d406e5c6fbfa https://www.encodeproject.org/files/ENCFF516FZI/@@download/ENCFF516FZI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF769ZWZ bam unfiltered alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 880291142 ENCODE Processing Pipeline 34d6cf667dc8130b1d13d93a104b084d https://www.encodeproject.org/files/ENCFF769ZWZ/@@download/ENCFF769ZWZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF617FBG bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 433686094 ENCODE Processing Pipeline ab27875b64bf10edf2aebdfc822a2b66 https://www.encodeproject.org/files/ENCFF617FBG/@@download/ENCFF617FBG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF919KIP bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 417643502 ENCODE Processing Pipeline 107ad2035b3d7d77c5dd94b0df3554c5 https://www.encodeproject.org/files/ENCFF919KIP/@@download/ENCFF919KIP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF604HCZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF930JOQ 8632065 ENCODE Processing Pipeline 1c5f5039590431448430f661868882c7 https://www.encodeproject.org/files/ENCFF604HCZ/@@download/ENCFF604HCZ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF691VDG bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 438964300 ENCODE Processing Pipeline 576a99e3953a2881125d250a978a8c97 https://www.encodeproject.org/files/ENCFF691VDG/@@download/ENCFF691VDG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF930JOQ bed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 4175721 ENCODE Processing Pipeline 776eb10ff945264f38022f5733e44cd3 https://www.encodeproject.org/files/ENCFF930JOQ/@@download/ENCFF930JOQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF963BTQ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF676VZW 8645123 ENCODE Processing Pipeline 0e27f44dc45c97ba16b8eab94b1c93ab https://www.encodeproject.org/files/ENCFF963BTQ/@@download/ENCFF963BTQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF985NMC bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 330319926 ENCODE Processing Pipeline 4e52cefd81243c624cdbfd294863fb8e https://www.encodeproject.org/files/ENCFF985NMC/@@download/ENCFF985NMC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF586SMQ bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 201367104 ENCODE Processing Pipeline 8cd78ef49da61b6d97f8d9abb9e150f6 https://www.encodeproject.org/files/ENCFF586SMQ/@@download/ENCFF586SMQ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF439CKG bed narrowPeak conservative idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ, ENCFF547MET, ENCFF676VZW, ENCFF930JOQ 550888 ENCODE Processing Pipeline f89de744846a4bbc435b3ccd9b0d5551 https://www.encodeproject.org/files/ENCFF439CKG/@@download/ENCFF439CKG.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF314XOM bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF542WEE 1089230 ENCODE Processing Pipeline 6311bf3ac61b45f05ea014533c0c98e1 https://www.encodeproject.org/files/ENCFF314XOM/@@download/ENCFF314XOM.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF425YHR bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 308926252 ENCODE Processing Pipeline 4d3effb0a6d502d1879e4f9d3465529e https://www.encodeproject.org/files/ENCFF425YHR/@@download/ENCFF425YHR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF389SUI bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 281004834 ENCODE Processing Pipeline c29f225fbeb4fbf6dc3d47c1f4a79cee https://www.encodeproject.org/files/ENCFF389SUI/@@download/ENCFF389SUI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF676VZW bed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 3639685 ENCODE Processing Pipeline 7039ae0225ecc6fa15b7f61e6fce102a https://www.encodeproject.org/files/ENCFF676VZW/@@download/ENCFF676VZW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF371UBQ bed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 2288101 ENCODE Processing Pipeline 1c62ed001e0aec3127dcbbc802135bfd https://www.encodeproject.org/files/ENCFF371UBQ/@@download/ENCFF371UBQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF321JGY bigBed narrowPeak peaks and background as input for IDR ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ 4954799 ENCODE Processing Pipeline 02713df264aedd83a8256068a4898ee6 https://www.encodeproject.org/files/ENCFF321JGY/@@download/ENCFF321JGY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF651GYW bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF439CKG 1031122 ENCODE Processing Pipeline 616859b4230e57fc18168c6f9a7a02db https://www.encodeproject.org/files/ENCFF651GYW/@@download/ENCFF651GYW.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF542WEE bed narrowPeak optimal idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ, ENCFF547MET, ENCFF676VZW, ENCFF930JOQ 592190 ENCODE Processing Pipeline 485442bbbd097f4298f1472654f4e7f6 https://www.encodeproject.org/files/ENCFF542WEE/@@download/ENCFF542WEE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001LNB bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LNH 202628935 Bing Ren, UCSD 7e9cbb6c4535d7218edcd3364c88d7a9 https://www.encodeproject.org/files/ENCFF001LNB/@@download/ENCFF001LNB.bam mm9 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF001LNC bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LNR 563617934 Bing Ren, UCSD 41e07dd014e18e22840e5f54c0f5d0aa https://www.encodeproject.org/files/ENCFF001LNC/@@download/ENCFF001LNC.bam mm9 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF001LND bigBed broadPeak peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAN 277179 Bing Ren, UCSD f19f8a52dcea4f8a89181bc230cc4be9 https://www.encodeproject.org/files/ENCFF001LND/@@download/ENCFF001LND.bigBed mm9 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF001LNG bigWig signal ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNB, ENCFF001LNC 71147714 Bing Ren, UCSD 51b824d211b6f203b04835c44c71e671 https://www.encodeproject.org/files/ENCFF001LNG/@@download/ENCFF001LNG.bigWig mm9 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF001LNH fastq reads ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 223741018 Bing Ren, UCSD 4fcc668a15d21b45fab047dab977bc59 https://www.encodeproject.org/files/ENCFF001LNH/@@download/ENCFF001LNH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNX/ released low read length, control low read depth insufficient read depth extremely low read depth ENCFF001LNR fastq reads ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 798813652 Bing Ren, UCSD 3e603700018dc39c68627061a97aa983 https://www.encodeproject.org/files/ENCFF001LNR/@@download/ENCFF001LNR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNY/ released low read length, control low read depth insufficient read depth extremely low read depth ENCFF001YAN bed broadPeak peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNB, ENCFF001LNC 155755 Bing Ren, UCSD 3d5e5a0eab8253f1761613c5d875098d https://www.encodeproject.org/files/ENCFF001YAN/@@download/ENCFF001YAN.bed.gz mm9 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF861GFM bam unfiltered alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNH, ENCFF018NEO 251752554 ENCODE Processing Pipeline cefc7e48510064709bbc9b55b91beda4 https://www.encodeproject.org/files/ENCFF861GFM/@@download/ENCFF861GFM.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF474TGP bam unfiltered alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNR, ENCFF018NEO 873709674 ENCODE Processing Pipeline d1fd072b8ec170f997f9a4aaa8d61785 https://www.encodeproject.org/files/ENCFF474TGP/@@download/ENCFF474TGP.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF986OKG bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNH, ENCFF018NEO 164858010 ENCODE Processing Pipeline 9effa8ed0e16b5901dab0e3e9155ba25 https://www.encodeproject.org/files/ENCFF986OKG/@@download/ENCFF986OKG.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF351NWX bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNR, ENCFF018NEO 437122527 ENCODE Processing Pipeline fe49ddc32ea2bf94abde9dce6316562e https://www.encodeproject.org/files/ENCFF351NWX/@@download/ENCFF351NWX.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF154GME bigWig signal p-value ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 262735047 ENCODE Processing Pipeline 91034eca187e4f9d184ef79321e1c185 https://www.encodeproject.org/files/ENCFF154GME/@@download/ENCFF154GME.bigWig mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF072CKY bigWig fold change over control ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB 201526784 ENCODE Processing Pipeline 6ad8f532a1ff1f780895f38f74343271 https://www.encodeproject.org/files/ENCFF072CKY/@@download/ENCFF072CKY.bigWig mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF521ABG bigWig fold change over control ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 260141291 ENCODE Processing Pipeline ba7df73b059190e25dd5dcf88c2d1ecb https://www.encodeproject.org/files/ENCFF521ABG/@@download/ENCFF521ABG.bigWig mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF710AEX bigWig fold change over control ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 88884276 ENCODE Processing Pipeline 439c3af4120465eafb2fe8c4413ccf0a https://www.encodeproject.org/files/ENCFF710AEX/@@download/ENCFF710AEX.bigWig mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF714UOQ bed narrowPeak conservative idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF125NGA, ENCFF547MET, ENCFF720XKE, ENCFF730SNE 181128 ENCODE Processing Pipeline a8f1ddd81e62cc52758053d9757c4675 https://www.encodeproject.org/files/ENCFF714UOQ/@@download/ENCFF714UOQ.bed.gz mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF032LCU bigWig signal p-value ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB 308227636 ENCODE Processing Pipeline 7052fd14e0e6f98aa6b0584b36ca1607 https://www.encodeproject.org/files/ENCFF032LCU/@@download/ENCFF032LCU.bigWig mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF028MIW bigWig signal p-value ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 318694977 ENCODE Processing Pipeline cf447442436201f46473502998594153 https://www.encodeproject.org/files/ENCFF028MIW/@@download/ENCFF028MIW.bigWig mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF664QCZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF714UOQ 389967 ENCODE Processing Pipeline af09b7e8017adfecdd27a63bb6487354 https://www.encodeproject.org/files/ENCFF664QCZ/@@download/ENCFF664QCZ.bigBed mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF730SNE bed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 4206450 ENCODE Processing Pipeline 9270838aedefde53194cff4b001e7b31 https://www.encodeproject.org/files/ENCFF730SNE/@@download/ENCFF730SNE.bed.gz mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF458TAP bed narrowPeak optimal idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF125NGA, ENCFF547MET, ENCFF720XKE, ENCFF730SNE 228733 ENCODE Processing Pipeline 8e0f5fe0bcaabf2e70557b241f681914 https://www.encodeproject.org/files/ENCFF458TAP/@@download/ENCFF458TAP.bed.gz mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF959GKP bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF458TAP 455098 ENCODE Processing Pipeline e41b757811685481a09d87358f1f464d https://www.encodeproject.org/files/ENCFF959GKP/@@download/ENCFF959GKP.bigBed mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF369ALC bigBed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF720XKE 3066536 ENCODE Processing Pipeline 1a24bec5c8d7478664449fc390f52415 https://www.encodeproject.org/files/ENCFF369ALC/@@download/ENCFF369ALC.bigBed mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF577WGW bigBed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF125NGA 6486068 ENCODE Processing Pipeline e7e56c40ef90f9761e60e64212e21834 https://www.encodeproject.org/files/ENCFF577WGW/@@download/ENCFF577WGW.bigBed mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF720XKE bed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF986OKG 1399643 ENCODE Processing Pipeline 83b78515e699ac9884c40d1f42253eba https://www.encodeproject.org/files/ENCFF720XKE/@@download/ENCFF720XKE.bed.gz mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF125NGA bed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF351NWX, ENCFF465JMB, ENCFF515GCB 3054852 ENCODE Processing Pipeline f55a968ba7ec095527b0c40d4ea9840d https://www.encodeproject.org/files/ENCFF125NGA/@@download/ENCFF125NGA.bed.gz mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF547DOH bigBed narrowPeak peaks and background as input for IDR ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF730SNE 10053526 ENCODE Processing Pipeline b69d1f45e992bd4c234c14fafca5ddd5 https://www.encodeproject.org/files/ENCFF547DOH/@@download/ENCFF547DOH.bigBed mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF001NWO bigBed narrowPeak peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJW 93717 Michael Snyder, Stanford 3b26c362cabca4a7f56e9b845e825d08 https://www.encodeproject.org/files/ENCFF001NWO/@@download/ENCFF001NWO.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NWP fastq reads ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 959806526 Michael Snyder, Stanford 535fa6b9be802725d921f58c1edbb009 https://www.encodeproject.org/files/ENCFF001NWP/@@download/ENCFF001NWP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NWR fastq reads ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 955206279 Michael Snyder, Stanford 1cf41c7f7a56a7ba9e4e4de85f9e321a https://www.encodeproject.org/files/ENCFF001NWR/@@download/ENCFF001NWR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NWT bigWig signal ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NWU, ENCFF001NWV 389989258 Michael Snyder, Stanford 2ce58491664333789c0ad9312c40c526 https://www.encodeproject.org/files/ENCFF001NWT/@@download/ENCFF001NWT.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NWU bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NWP 428677321 Michael Snyder, Stanford 79fdc0bcf1daa7a0155c7915e5a959ba https://www.encodeproject.org/files/ENCFF001NWU/@@download/ENCFF001NWU.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NWV bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NWR 456867234 Michael Snyder, Stanford cb06d885fe047c638b8acbbfe6127855 https://www.encodeproject.org/files/ENCFF001NWV/@@download/ENCFF001NWV.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001YJW bed narrowPeak peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NWU, ENCFF001NWV 19852 Michael Snyder, Stanford 197cb0b06fb0d8510fd3aba905d221c9 https://www.encodeproject.org/files/ENCFF001YJW/@@download/ENCFF001YJW.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF435JHB bam unfiltered alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NWR, ENCFF018NEO 1024510201 ENCODE Processing Pipeline 23dfded5ab222f02ce5df2a7bfcb015a https://www.encodeproject.org/files/ENCFF435JHB/@@download/ENCFF435JHB.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF496QBC bam unfiltered alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NWP, ENCFF018NEO 1008593175 ENCODE Processing Pipeline e0a11ff66a2726387405e0beeee0840d https://www.encodeproject.org/files/ENCFF496QBC/@@download/ENCFF496QBC.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF142TWS bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NWR, ENCFF018NEO 587664771 ENCODE Processing Pipeline b00357078102d3a0f9dec73bcc32a2f1 https://www.encodeproject.org/files/ENCFF142TWS/@@download/ENCFF142TWS.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF538JPD bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NWP, ENCFF018NEO 521375721 ENCODE Processing Pipeline 8562f0075ca06766370a2ece9bf64388 https://www.encodeproject.org/files/ENCFF538JPD/@@download/ENCFF538JPD.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF732PWT bigWig signal p-value ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF538JPD 254129409 ENCODE Processing Pipeline 378585d5d9c3cba33b5c2940bdfd512e https://www.encodeproject.org/files/ENCFF732PWT/@@download/ENCFF732PWT.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF707YXY bigWig signal p-value ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF142TWS, ENCFF171OVT 253085377 ENCODE Processing Pipeline 1fbbab3a683d62be21d00f68a9e9f56a https://www.encodeproject.org/files/ENCFF707YXY/@@download/ENCFF707YXY.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF104SUM bigWig fold change over control ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF142TWS, ENCFF171OVT, ENCFF538JPD 452598702 ENCODE Processing Pipeline de42716b4d0768a2692ceb8d8b7beb72 https://www.encodeproject.org/files/ENCFF104SUM/@@download/ENCFF104SUM.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF216NAK bigWig fold change over control ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF142TWS, ENCFF171OVT 272351035 ENCODE Processing Pipeline d07ae7b26742da6b262d2937142d42de https://www.encodeproject.org/files/ENCFF216NAK/@@download/ENCFF216NAK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF101AMR bed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF142TWS, ENCFF171OVT, ENCFF538JPD 5199213 ENCODE Processing Pipeline 40785a7e00433c015ba1a5414eb98539 https://www.encodeproject.org/files/ENCFF101AMR/@@download/ENCFF101AMR.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF312YJJ bigWig fold change over control ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF538JPD 244930465 ENCODE Processing Pipeline 5f8c55f733b829ce8c78eb465aff5438 https://www.encodeproject.org/files/ENCFF312YJJ/@@download/ENCFF312YJJ.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF178VLJ bigBed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF378SRR 10122055 ENCODE Processing Pipeline e2ae0bc24eef55062840971e2c7bf525 https://www.encodeproject.org/files/ENCFF178VLJ/@@download/ENCFF178VLJ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF300NOO bigWig signal p-value ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF142TWS, ENCFF171OVT, ENCFF538JPD 345322475 ENCODE Processing Pipeline f934e3bd0e3597c4ab6cf45fced8fbbc https://www.encodeproject.org/files/ENCFF300NOO/@@download/ENCFF300NOO.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF890BUV bed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF142TWS, ENCFF171OVT 4773158 ENCODE Processing Pipeline 597e9d5a6196b9054e9c076e1ef297ca https://www.encodeproject.org/files/ENCFF890BUV/@@download/ENCFF890BUV.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF378SRR bed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF538JPD 4179005 ENCODE Processing Pipeline 8baba3e0aca4e79f92f15db32170ce05 https://www.encodeproject.org/files/ENCFF378SRR/@@download/ENCFF378SRR.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF651NXT bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF016CZR 127065 ENCODE Processing Pipeline 0b97bf3ed35276913f6a095d01302d5c https://www.encodeproject.org/files/ENCFF651NXT/@@download/ENCFF651NXT.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF716FDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF627TGO 172342 ENCODE Processing Pipeline b4c0f18114231f194d0291d9b4527192 https://www.encodeproject.org/files/ENCFF716FDQ/@@download/ENCFF716FDQ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF803INS bigBed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF890BUV 10641930 ENCODE Processing Pipeline 19363ab72c54c0b0c8fc6e2dae4cfdb1 https://www.encodeproject.org/files/ENCFF803INS/@@download/ENCFF803INS.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF016CZR bed narrowPeak conservative idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF101AMR, ENCFF378SRR, ENCFF547MET, ENCFF890BUV 46083 ENCODE Processing Pipeline ec7bb0b437025130354af26f8a480e76 https://www.encodeproject.org/files/ENCFF016CZR/@@download/ENCFF016CZR.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF881FXP bigBed narrowPeak peaks and background as input for IDR ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF101AMR 10745253 ENCODE Processing Pipeline d2f91d6a3c2a5d8e7736cd0222cef292 https://www.encodeproject.org/files/ENCFF881FXP/@@download/ENCFF881FXP.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF627TGO bed narrowPeak optimal idr thresholded peaks ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF101AMR, ENCFF378SRR, ENCFF547MET, ENCFF890BUV 58993 ENCODE Processing Pipeline 1647fb66fc3e5d064d9fa0407b687ebf https://www.encodeproject.org/files/ENCFF627TGO/@@download/ENCFF627TGO.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001KTE bam alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KTO 590422003 Bing Ren, UCSD f18e8424aff52049728d7cbc1bda803c https://www.encodeproject.org/files/ENCFF001KTE/@@download/ENCFF001KTE.bam mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001KTG bam alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KTQ 824985678 Bing Ren, UCSD d1591e3b9077b77a44b2bcfca275248c https://www.encodeproject.org/files/ENCFF001KTG/@@download/ENCFF001KTG.bam mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001KTH bigBed broadPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYV 376102 Bing Ren, UCSD 94d74d11e053a28ee232934e11506c75 https://www.encodeproject.org/files/ENCFF001KTH/@@download/ENCFF001KTH.bigBed mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001KTK bigWig signal ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KTE, ENCFF001KTG 13054084 Bing Ren, UCSD e829e600822cfc478457030ade6ddf1d https://www.encodeproject.org/files/ENCFF001KTK/@@download/ENCFF001KTK.bigWig mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001KTO fastq reads ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 759098143 Bing Ren, UCSD 0364e4be9034b908b333ed8f584e5681 https://www.encodeproject.org/files/ENCFF001KTO/@@download/ENCFF001KTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUJ/ released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001KTQ fastq reads ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1074039402 Bing Ren, UCSD bf88bc7dae19282624f40f22b9ace0ef https://www.encodeproject.org/files/ENCFF001KTQ/@@download/ENCFF001KTQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001XYV bed broadPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KTE, ENCFF001KTG 259098 Bing Ren, UCSD e7fdf45c3c162a9ffe8bf529802dd006 https://www.encodeproject.org/files/ENCFF001XYV/@@download/ENCFF001XYV.bed.gz mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF005IBZ bam unfiltered alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTO, ENCFF018NEO 699604911 ENCODE Processing Pipeline 3d25098631cb75e61ee08d05144131dc https://www.encodeproject.org/files/ENCFF005IBZ/@@download/ENCFF005IBZ.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF530NHV bam unfiltered alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTQ, ENCFF018NEO 974777408 ENCODE Processing Pipeline ccfb65df1be7b64ad1595a9757a6691a https://www.encodeproject.org/files/ENCFF530NHV/@@download/ENCFF530NHV.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF473CVH bam alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTO, ENCFF018NEO 408942819 ENCODE Processing Pipeline abe3dbc61059b6e82bbc7bed42d6f143 https://www.encodeproject.org/files/ENCFF473CVH/@@download/ENCFF473CVH.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF980FRR bam alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTQ, ENCFF018NEO 524364835 ENCODE Processing Pipeline d575c9be2f39d9489fb6fb977896939d https://www.encodeproject.org/files/ENCFF980FRR/@@download/ENCFF980FRR.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF850JZC bed narrowPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF473CVH, ENCFF769FTV 740017 ENCODE Processing Pipeline b844a6bf91ad8d251a2bc792f5e114f9 https://www.encodeproject.org/files/ENCFF850JZC/@@download/ENCFF850JZC.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF774UNB bed narrowPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF980FRR 851719 ENCODE Processing Pipeline 3d9fd7b8fcb4a93d48a3f52cba322081 https://www.encodeproject.org/files/ENCFF774UNB/@@download/ENCFF774UNB.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF956OYX bed narrowPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF242QZL, ENCFF473CVH, ENCFF769FTV, ENCFF980FRR 912035 ENCODE Processing Pipeline 89a7254d199795c5b804b3072c4eb8fb https://www.encodeproject.org/files/ENCFF956OYX/@@download/ENCFF956OYX.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF097XHX bigBed narrowPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF850JZC 2228370 ENCODE Processing Pipeline 7a3e54a93d5ceba7dee91143f661a35a https://www.encodeproject.org/files/ENCFF097XHX/@@download/ENCFF097XHX.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF897LKV bigBed narrowPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF956OYX 2536543 ENCODE Processing Pipeline 3238d49067dc5c31f2380666332f62b6 https://www.encodeproject.org/files/ENCFF897LKV/@@download/ENCFF897LKV.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF507GCI bigBed narrowPeak peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF774UNB 2534869 ENCODE Processing Pipeline 987df45a5ca1625539b4deac24c8b0f7 https://www.encodeproject.org/files/ENCFF507GCI/@@download/ENCFF507GCI.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF366WSO bigWig signal p-value ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF980FRR 287191264 ENCODE Processing Pipeline 0acfa84f0e5b340844f057e56d530eca https://www.encodeproject.org/files/ENCFF366WSO/@@download/ENCFF366WSO.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF271CNZ bigWig signal p-value ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF473CVH, ENCFF769FTV 249703545 ENCODE Processing Pipeline b11348f5f7777ed2e686d53c6e5cfe01 https://www.encodeproject.org/files/ENCFF271CNZ/@@download/ENCFF271CNZ.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF594FOO bigWig signal p-value ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF242QZL, ENCFF473CVH, ENCFF769FTV, ENCFF980FRR 476884045 ENCODE Processing Pipeline a127b65b2f39b6838935aba9323a185b https://www.encodeproject.org/files/ENCFF594FOO/@@download/ENCFF594FOO.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF448ZPG bigWig fold change over control ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF980FRR 153873424 ENCODE Processing Pipeline 0e8a831274d6d1c4e860288bcdb079ae https://www.encodeproject.org/files/ENCFF448ZPG/@@download/ENCFF448ZPG.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF032JSS bigWig fold change over control ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF242QZL, ENCFF473CVH, ENCFF769FTV, ENCFF980FRR 260719890 ENCODE Processing Pipeline 8224cf57cec94b0811a1084a80128c5d https://www.encodeproject.org/files/ENCFF032JSS/@@download/ENCFF032JSS.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF214NIE bed narrowPeak replicated peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF774UNB, ENCFF850JZC, ENCFF956OYX 1018497 ENCODE Processing Pipeline df0f7134a2f294040d3eac3b19da2494 https://www.encodeproject.org/files/ENCFF214NIE/@@download/ENCFF214NIE.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF097DMR bigWig fold change over control ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF473CVH, ENCFF769FTV 122911491 ENCODE Processing Pipeline 5677000fffbed78a4209dbf9b1a898f2 https://www.encodeproject.org/files/ENCFF097DMR/@@download/ENCFF097DMR.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF560WMS bigBed narrowPeak replicated peaks ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF214NIE 2159739 ENCODE Processing Pipeline bb5e36f579815d10f52c2b87db060943 https://www.encodeproject.org/files/ENCFF560WMS/@@download/ENCFF560WMS.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF002APR fastq reads ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1305862528 Bing Ren, UCSD a06fbd71a0ab962d2e62ba4c4c44bdea SRA:SRR3651867 https://www.encodeproject.org/files/ENCFF002APR/@@download/ENCFF002APR.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF002APS fastq reads ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1410245705 Bing Ren, UCSD 8414794f8d274b6deba7d4b2cbb70c5f SRA:SRR3651866 https://www.encodeproject.org/files/ENCFF002APS/@@download/ENCFF002APS.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF964WIB bam unfiltered alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APS, ENCFF806TVZ 1688633389 ENCODE Processing Pipeline fd583e4bc65ba04d96310809f00ad806 https://www.encodeproject.org/files/ENCFF964WIB/@@download/ENCFF964WIB.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF149RLR bam unfiltered alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APR, ENCFF806TVZ 1569579008 ENCODE Processing Pipeline ca24d5abfd52dd51109c8f102e64d382 https://www.encodeproject.org/files/ENCFF149RLR/@@download/ENCFF149RLR.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF126APW bam alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APS, ENCFF806TVZ 1134393825 ENCODE Processing Pipeline bb6bded97b51de8006a4c2c31654ba2d https://www.encodeproject.org/files/ENCFF126APW/@@download/ENCFF126APW.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF893KXG bam alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APR, ENCFF806TVZ 1072560630 ENCODE Processing Pipeline b4d137869efa4efb65e50a81af424e3d https://www.encodeproject.org/files/ENCFF893KXG/@@download/ENCFF893KXG.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF002HZV bam unfiltered alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APR, ENCFF018NEO 1571335967 ENCODE Processing Pipeline 7547ee0e71d85f6e219fbd3f2da29fc4 https://www.encodeproject.org/files/ENCFF002HZV/@@download/ENCFF002HZV.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF784ORI bam unfiltered alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APS, ENCFF018NEO 1690369392 ENCODE Processing Pipeline 64f928531880f77f4382b32f62ff61e7 https://www.encodeproject.org/files/ENCFF784ORI/@@download/ENCFF784ORI.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF255XXC bam alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APR, ENCFF018NEO 1072230033 ENCODE Processing Pipeline e089452fdff9c1595568336fccafc3e7 https://www.encodeproject.org/files/ENCFF255XXC/@@download/ENCFF255XXC.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF921XQX bam alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APS, ENCFF018NEO 1134041414 ENCODE Processing Pipeline 567d51040990540b94a623d777ecfecf https://www.encodeproject.org/files/ENCFF921XQX/@@download/ENCFF921XQX.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF419ANT fastq reads ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2413678230 Bing Ren, UCSD 0f7c122039c5a2cc558949eaae7cc9dd SRA:SRR3652450 https://www.encodeproject.org/files/ENCFF419ANT/@@download/ENCFF419ANT.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released inconsistent platforms ENCFF610QKS fastq reads ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2548911701 Bing Ren, UCSD 122a39606c0f4239918385b56af573c2 SRA:SRR3652451 https://www.encodeproject.org/files/ENCFF610QKS/@@download/ENCFF610QKS.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released inconsistent platforms ENCFF061BZL bam alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF419ANT, ENCFF806TVZ 1904024926 ENCODE Processing Pipeline c0c18f5c6069ad4068580397a7ad3254 https://www.encodeproject.org/files/ENCFF061BZL/@@download/ENCFF061BZL.bam mm10-minimal archived inconsistent platforms ENCFF012NAU bam alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF610QKS, ENCFF806TVZ 2115768744 ENCODE Processing Pipeline 5ba0f7442803d68e68254076ed2c81dd https://www.encodeproject.org/files/ENCFF012NAU/@@download/ENCFF012NAU.bam mm10-minimal archived inconsistent platforms ENCFF276NPZ bed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF061BZL 983883 ENCODE Processing Pipeline f8f9e3b163e2e6b1030eb433d81014c5 https://www.encodeproject.org/files/ENCFF276NPZ/@@download/ENCFF276NPZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF069NYG bed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF012NAU, ENCFF015ICF, ENCFF061BZL, ENCFF309QAZ 1070583 ENCODE Processing Pipeline c6a61e62abe65f1fce6c21812a3b0fe4 https://www.encodeproject.org/files/ENCFF069NYG/@@download/ENCFF069NYG.bed.gz mm10-minimal archived inconsistent platforms ENCFF861BBL bigBed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF276NPZ 2456783 ENCODE Processing Pipeline 84db823a32722371e558a42d329b5c58 https://www.encodeproject.org/files/ENCFF861BBL/@@download/ENCFF861BBL.bigBed mm10-minimal archived inconsistent platforms ENCFF548SKZ bigBed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF692CVE 2114986 ENCODE Processing Pipeline b946fea838a7c1385681813242dbca2b https://www.encodeproject.org/files/ENCFF548SKZ/@@download/ENCFF548SKZ.bigBed mm10-minimal archived inconsistent platforms ENCFF692CVE bed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF012NAU, ENCFF309QAZ 842712 ENCODE Processing Pipeline a6b307ade39062b3a19fb5fa2e572d82 https://www.encodeproject.org/files/ENCFF692CVE/@@download/ENCFF692CVE.bed.gz mm10-minimal archived inconsistent platforms ENCFF622NFM bigWig signal p-value ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF061BZL 704161456 ENCODE Processing Pipeline 862b04a8ccbcf9d3cab36d5b7cbf0b85 https://www.encodeproject.org/files/ENCFF622NFM/@@download/ENCFF622NFM.bigWig mm10-minimal archived inconsistent platforms ENCFF964TAR bigBed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF069NYG 2570526 ENCODE Processing Pipeline 1ed612c13e1f49be342a847ff126ae17 https://www.encodeproject.org/files/ENCFF964TAR/@@download/ENCFF964TAR.bigBed mm10-minimal archived inconsistent platforms ENCFF858QEE bigWig signal p-value ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF012NAU, ENCFF309QAZ 590012727 ENCODE Processing Pipeline 927ade0a03dabe0eb7bd9461e1ab1a1e https://www.encodeproject.org/files/ENCFF858QEE/@@download/ENCFF858QEE.bigWig mm10-minimal archived inconsistent platforms ENCFF852DWB bigWig signal p-value ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF012NAU, ENCFF015ICF, ENCFF061BZL, ENCFF309QAZ 1154329692 ENCODE Processing Pipeline f3c91ea9943eddad64a2974fe499da37 https://www.encodeproject.org/files/ENCFF852DWB/@@download/ENCFF852DWB.bigWig mm10-minimal archived inconsistent platforms ENCFF100ROD bigWig fold change over control ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF061BZL 674361920 ENCODE Processing Pipeline fd54e1dab7e3a499ba736738803dba3d https://www.encodeproject.org/files/ENCFF100ROD/@@download/ENCFF100ROD.bigWig mm10-minimal archived inconsistent platforms ENCFF654WSG bigWig fold change over control ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF012NAU, ENCFF309QAZ 733558210 ENCODE Processing Pipeline 57e8e893525a739b90a753d65cda9ac2 https://www.encodeproject.org/files/ENCFF654WSG/@@download/ENCFF654WSG.bigWig mm10-minimal archived inconsistent platforms ENCFF246SSA bigWig fold change over control ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF012NAU, ENCFF015ICF, ENCFF061BZL, ENCFF309QAZ 1237137537 ENCODE Processing Pipeline 4bc7425e2ed5c2f059bd539cf177a80f https://www.encodeproject.org/files/ENCFF246SSA/@@download/ENCFF246SSA.bigWig mm10-minimal archived inconsistent platforms ENCFF732BFT bed narrowPeak replicated peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF069NYG, ENCFF276NPZ, ENCFF692CVE 686960 ENCODE Processing Pipeline 0d0e911b94b02a8d88bec74793fe4663 https://www.encodeproject.org/files/ENCFF732BFT/@@download/ENCFF732BFT.bed.gz mm10-minimal archived inconsistent platforms ENCFF418FMS bigBed narrowPeak replicated peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF732BFT 1712106 ENCODE Processing Pipeline 1ce6eb30b6c1a9a34fd659bfc542d960 https://www.encodeproject.org/files/ENCFF418FMS/@@download/ENCFF418FMS.bigBed mm10-minimal archived inconsistent platforms ENCFF062QHL bam unfiltered alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF610QKS 3060492594 ENCODE Processing Pipeline 2d7dea5d150e6ae6fa97b4569c195b24 https://www.encodeproject.org/files/ENCFF062QHL/@@download/ENCFF062QHL.bam mm10 released inconsistent platforms ENCFF691YFD bam unfiltered alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF419ANT 2874241611 ENCODE Processing Pipeline 6be6f490d21dceab3ec617c7651a54ad https://www.encodeproject.org/files/ENCFF691YFD/@@download/ENCFF691YFD.bam mm10 released inconsistent platforms ENCFF008PKI bam alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF610QKS 2115335647 ENCODE Processing Pipeline 76e40d681f5095d151139e72f11c849f https://www.encodeproject.org/files/ENCFF008PKI/@@download/ENCFF008PKI.bam mm10 released inconsistent platforms ENCFF871CYV bam alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF419ANT 1903686676 ENCODE Processing Pipeline 0748395ffab6a2be8a00bfc676d4177c https://www.encodeproject.org/files/ENCFF871CYV/@@download/ENCFF871CYV.bam mm10 released inconsistent platforms ENCFF697RVU bed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF805AXD, ENCFF871CYV 953032 ENCODE Processing Pipeline 0c12f22022d2d17530b1d61ce4247fd3 https://www.encodeproject.org/files/ENCFF697RVU/@@download/ENCFF697RVU.bed.gz mm10 released inconsistent platforms ENCFF311ZNQ bed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF008PKI, ENCFF098HSW 866047 ENCODE Processing Pipeline 41c7ad0431a90aa4b8134fa4cf93cddc https://www.encodeproject.org/files/ENCFF311ZNQ/@@download/ENCFF311ZNQ.bed.gz mm10 released inconsistent platforms ENCFF458OQO bed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF008PKI, ENCFF098HSW, ENCFF805AXD, ENCFF871CYV 1100443 ENCODE Processing Pipeline da8e0cd48a8076632a0cf420bfb70f34 https://www.encodeproject.org/files/ENCFF458OQO/@@download/ENCFF458OQO.bed.gz mm10 released inconsistent platforms ENCFF894PBP bigBed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF697RVU 2384013 ENCODE Processing Pipeline bf52c163028ae1a26f1e5f6edcabf980 https://www.encodeproject.org/files/ENCFF894PBP/@@download/ENCFF894PBP.bigBed mm10 released inconsistent platforms ENCFF967VTG bigBed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF311ZNQ 2170219 ENCODE Processing Pipeline 74c1ceb9fb9e2d7e5f5362695c4ffbde https://www.encodeproject.org/files/ENCFF967VTG/@@download/ENCFF967VTG.bigBed mm10 released inconsistent platforms ENCFF477WQZ bigBed narrowPeak peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF458OQO 3314256 ENCODE Processing Pipeline 70d77bcf968c94edf4f544136cc3a559 https://www.encodeproject.org/files/ENCFF477WQZ/@@download/ENCFF477WQZ.bigBed mm10 released inconsistent platforms ENCFF036MLB bigWig signal p-value ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF805AXD, ENCFF871CYV 532429227 ENCODE Processing Pipeline 3956c55dbeb824961a62ad4cc3e0dcff https://www.encodeproject.org/files/ENCFF036MLB/@@download/ENCFF036MLB.bigWig mm10 released inconsistent platforms ENCFF176NII bigWig signal p-value ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF008PKI, ENCFF098HSW 773609690 ENCODE Processing Pipeline d49ba1a1e3ebe093a3d6a81f03c763cf https://www.encodeproject.org/files/ENCFF176NII/@@download/ENCFF176NII.bigWig mm10 released inconsistent platforms ENCFF778RTD bigWig signal p-value ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF008PKI, ENCFF098HSW, ENCFF805AXD, ENCFF871CYV 1184461664 ENCODE Processing Pipeline ff6b5020d346ade9ff8ccda2eaa8f107 https://www.encodeproject.org/files/ENCFF778RTD/@@download/ENCFF778RTD.bigWig mm10 released inconsistent platforms ENCFF275AQZ bigWig fold change over control ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF805AXD, ENCFF871CYV 686849847 ENCODE Processing Pipeline d65c00877632fcd9651ed277074dff0f https://www.encodeproject.org/files/ENCFF275AQZ/@@download/ENCFF275AQZ.bigWig mm10 released inconsistent platforms ENCFF458MCC bigWig fold change over control ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF008PKI, ENCFF098HSW 739826552 ENCODE Processing Pipeline 79d3b2ceb1ac9ea59415b385703ee173 https://www.encodeproject.org/files/ENCFF458MCC/@@download/ENCFF458MCC.bigWig mm10 released inconsistent platforms ENCFF197IGU bigWig fold change over control ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF008PKI, ENCFF098HSW, ENCFF805AXD, ENCFF871CYV 1346468775 ENCODE Processing Pipeline 105580b4dafdc6d775ef8d35a16a4795 https://www.encodeproject.org/files/ENCFF197IGU/@@download/ENCFF197IGU.bigWig mm10 released inconsistent platforms ENCFF571LJI bed narrowPeak replicated peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF311ZNQ, ENCFF458OQO, ENCFF697RVU 756348 ENCODE Processing Pipeline 698c3dd9802a368a61d2d54a42b11ef1 https://www.encodeproject.org/files/ENCFF571LJI/@@download/ENCFF571LJI.bed.gz mm10 released inconsistent platforms ENCFF374RJZ bigBed narrowPeak replicated peaks ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF571LJI 1850853 ENCODE Processing Pipeline c9ee58d0252543769b98c3cf820cab4b https://www.encodeproject.org/files/ENCFF374RJZ/@@download/ENCFF374RJZ.bigBed mm10 released inconsistent platforms ENCFF090ODQ fastq reads ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2008625862 Bing Ren, UCSD 312717fdb83d69cbf3439ae7536cd5fe SRA:SRR3652605 https://www.encodeproject.org/files/ENCFF090ODQ/@@download/ENCFF090ODQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released inconsistent platforms ENCFF291TCR fastq reads ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1903216523 Bing Ren, UCSD a7d11417ff7253b3af6c356bd24ab02f SRA:SRR3652606 https://www.encodeproject.org/files/ENCFF291TCR/@@download/ENCFF291TCR.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released inconsistent platforms ENCFF226JAR bam alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF090ODQ, ENCFF806TVZ 1669784183 ENCODE Processing Pipeline 640f0a0d03becae31b40aca9273854ae https://www.encodeproject.org/files/ENCFF226JAR/@@download/ENCFF226JAR.bam mm10-minimal archived inconsistent platforms ENCFF869AJU bam alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF291TCR, ENCFF806TVZ 1582983555 ENCODE Processing Pipeline eeb8a0ee8e82f4a6d61f1f70fcc6f34c https://www.encodeproject.org/files/ENCFF869AJU/@@download/ENCFF869AJU.bam mm10-minimal archived inconsistent platforms ENCFF967CVB bed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF869AJU 786559 ENCODE Processing Pipeline 4c4eef1fc99f6699500c1cd7d7d2b153 https://www.encodeproject.org/files/ENCFF967CVB/@@download/ENCFF967CVB.bed.gz mm10-minimal archived inconsistent platforms ENCFF889RFY bigBed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF792NYG 2294795 ENCODE Processing Pipeline 490d39eb570e248988d79c19a5bf6cee https://www.encodeproject.org/files/ENCFF889RFY/@@download/ENCFF889RFY.bigBed mm10-minimal archived inconsistent platforms ENCFF896ICQ bed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF226JAR, ENCFF314ZXJ, ENCFF869AJU 893463 ENCODE Processing Pipeline e82b4d31a80928b3532a0c88523ffa55 https://www.encodeproject.org/files/ENCFF896ICQ/@@download/ENCFF896ICQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF792NYG bed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF226JAR, ENCFF314ZXJ 715192 ENCODE Processing Pipeline 3ddfe52678cd44dfdee96a08548d70ef https://www.encodeproject.org/files/ENCFF792NYG/@@download/ENCFF792NYG.bed.gz mm10-minimal archived inconsistent platforms ENCFF230TIJ bigBed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF896ICQ 2710663 ENCODE Processing Pipeline f2337f4083fc04fedd70c88a5c2952f0 https://www.encodeproject.org/files/ENCFF230TIJ/@@download/ENCFF230TIJ.bigBed mm10-minimal archived inconsistent platforms ENCFF583XSK bigBed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF967CVB 2508791 ENCODE Processing Pipeline 60f359e7bed7b6dc78ad3e875ba6b3a3 https://www.encodeproject.org/files/ENCFF583XSK/@@download/ENCFF583XSK.bigBed mm10-minimal archived inconsistent platforms ENCFF544ZRO bigWig signal p-value ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF869AJU 593387047 ENCODE Processing Pipeline 693477e2dd4ee43f7cd96047157fe7d6 https://www.encodeproject.org/files/ENCFF544ZRO/@@download/ENCFF544ZRO.bigWig mm10-minimal archived inconsistent platforms ENCFF197SFA bigWig signal p-value ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF226JAR, ENCFF314ZXJ, ENCFF869AJU 1186629638 ENCODE Processing Pipeline 2acbf813419507308f0f2f2c82da516a https://www.encodeproject.org/files/ENCFF197SFA/@@download/ENCFF197SFA.bigWig mm10-minimal archived inconsistent platforms ENCFF079FMD bigWig signal p-value ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF226JAR, ENCFF314ZXJ 527215209 ENCODE Processing Pipeline af092c7de13e9252b273f8acdd5b100d https://www.encodeproject.org/files/ENCFF079FMD/@@download/ENCFF079FMD.bigWig mm10-minimal archived inconsistent platforms ENCFF308RIM bigWig fold change over control ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF869AJU 622435741 ENCODE Processing Pipeline 2195d5f786b19fc1dc5c23818211b744 https://www.encodeproject.org/files/ENCFF308RIM/@@download/ENCFF308RIM.bigWig mm10-minimal archived inconsistent platforms ENCFF720NWZ bigWig fold change over control ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF226JAR, ENCFF314ZXJ 635082841 ENCODE Processing Pipeline 1f82ce6015bd476be444c1ef668232f4 https://www.encodeproject.org/files/ENCFF720NWZ/@@download/ENCFF720NWZ.bigWig mm10-minimal archived inconsistent platforms ENCFF918EDV bigWig fold change over control ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF226JAR, ENCFF314ZXJ, ENCFF869AJU 1190374091 ENCODE Processing Pipeline dc91155d6de0e851aedc69901de683b5 https://www.encodeproject.org/files/ENCFF918EDV/@@download/ENCFF918EDV.bigWig mm10-minimal archived inconsistent platforms ENCFF662WNR bigBed narrowPeak replicated peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF434TVF 1711042 ENCODE Processing Pipeline 213d1274b565e37b7caddaa66daa5d40 https://www.encodeproject.org/files/ENCFF662WNR/@@download/ENCFF662WNR.bigBed mm10-minimal archived inconsistent platforms ENCFF434TVF bed narrowPeak replicated peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF792NYG, ENCFF896ICQ, ENCFF967CVB 738149 ENCODE Processing Pipeline 54743eab2e4900475d300527d63e5a5d https://www.encodeproject.org/files/ENCFF434TVF/@@download/ENCFF434TVF.bed.gz mm10-minimal archived inconsistent platforms ENCFF859CYJ bam unfiltered alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF291TCR 2278327564 ENCODE Processing Pipeline 39982a0c2bf37ab4d764bb2f7a01f866 https://www.encodeproject.org/files/ENCFF859CYJ/@@download/ENCFF859CYJ.bam mm10 released inconsistent platforms ENCFF073QRS bam unfiltered alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF090ODQ 2412875508 ENCODE Processing Pipeline dd58ddb94e0f6e27cd09e4be6962edff https://www.encodeproject.org/files/ENCFF073QRS/@@download/ENCFF073QRS.bam mm10 released inconsistent platforms ENCFF128HND bam alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF291TCR 1582672423 ENCODE Processing Pipeline 51694135fe1a491756b8e8e1c11dad16 https://www.encodeproject.org/files/ENCFF128HND/@@download/ENCFF128HND.bam mm10 released inconsistent platforms ENCFF561SYL bam alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF090ODQ 1669456855 ENCODE Processing Pipeline 7e9ed53a08f6809ec5eec9ffdd90b8f9 https://www.encodeproject.org/files/ENCFF561SYL/@@download/ENCFF561SYL.bam mm10 released inconsistent platforms ENCFF869CUY bed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF128HND, ENCFF615JIE 800471 ENCODE Processing Pipeline 889afe672164bf88f3defc8c1bc89252 https://www.encodeproject.org/files/ENCFF869CUY/@@download/ENCFF869CUY.bed.gz mm10 released inconsistent platforms ENCFF878GHR bed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF561SYL 730662 ENCODE Processing Pipeline 42dabeedb99bbae61deb10ce6ac493c0 https://www.encodeproject.org/files/ENCFF878GHR/@@download/ENCFF878GHR.bed.gz mm10 released inconsistent platforms ENCFF640XUT bed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF128HND, ENCFF164ZUK, ENCFF561SYL, ENCFF615JIE 905464 ENCODE Processing Pipeline 38759a2d991a15310de1ca723d1aecc6 https://www.encodeproject.org/files/ENCFF640XUT/@@download/ENCFF640XUT.bed.gz mm10 released inconsistent platforms ENCFF400XWR bigBed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF869CUY 2549307 ENCODE Processing Pipeline bd03d50c026a0859186f1cd577b2835c https://www.encodeproject.org/files/ENCFF400XWR/@@download/ENCFF400XWR.bigBed mm10 released inconsistent platforms ENCFF128PBS bigBed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF878GHR 2328377 ENCODE Processing Pipeline 6220c0a1d6c1d9d3bff4ff66f093e540 https://www.encodeproject.org/files/ENCFF128PBS/@@download/ENCFF128PBS.bigBed mm10 released inconsistent platforms ENCFF964YPB bigBed narrowPeak peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF640XUT 2743778 ENCODE Processing Pipeline 39367d3f3288d564b19e1032da50ecc5 https://www.encodeproject.org/files/ENCFF964YPB/@@download/ENCFF964YPB.bigBed mm10 released inconsistent platforms ENCFF294PGX bigWig signal p-value ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF128HND, ENCFF615JIE 561102524 ENCODE Processing Pipeline aff465f557b035fb72ddf802128d0de5 https://www.encodeproject.org/files/ENCFF294PGX/@@download/ENCFF294PGX.bigWig mm10 released inconsistent platforms ENCFF370DCZ bigWig signal p-value ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF561SYL 668929852 ENCODE Processing Pipeline 553f5b46341e7b9f5b9addc59f74c0d8 https://www.encodeproject.org/files/ENCFF370DCZ/@@download/ENCFF370DCZ.bigWig mm10 released inconsistent platforms ENCFF659JYE bigWig signal p-value ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF128HND, ENCFF164ZUK, ENCFF561SYL, ENCFF615JIE 1034052574 ENCODE Processing Pipeline 7c423283f7d7375f16de311786d1aeab https://www.encodeproject.org/files/ENCFF659JYE/@@download/ENCFF659JYE.bigWig mm10 released inconsistent platforms ENCFF189YVT bigWig fold change over control ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF128HND, ENCFF615JIE 664797738 ENCODE Processing Pipeline e1e6c93808f2529299657217416b106b https://www.encodeproject.org/files/ENCFF189YVT/@@download/ENCFF189YVT.bigWig mm10 released inconsistent platforms ENCFF867BWF bigWig fold change over control ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF561SYL 667481912 ENCODE Processing Pipeline 68a60308fdfcc473118742a5b295ab29 https://www.encodeproject.org/files/ENCFF867BWF/@@download/ENCFF867BWF.bigWig mm10 released inconsistent platforms ENCFF758CLJ bigWig fold change over control ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF128HND, ENCFF164ZUK, ENCFF561SYL, ENCFF615JIE 1288643659 ENCODE Processing Pipeline 86751882348b60f2c76588542e2a649f https://www.encodeproject.org/files/ENCFF758CLJ/@@download/ENCFF758CLJ.bigWig mm10 released inconsistent platforms ENCFF758AJN bed narrowPeak replicated peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF640XUT, ENCFF869CUY, ENCFF878GHR 745603 ENCODE Processing Pipeline 1f2f2cb61dd5a15fc154b27b06230159 https://www.encodeproject.org/files/ENCFF758AJN/@@download/ENCFF758AJN.bed.gz mm10 released inconsistent platforms ENCFF163FNT bigBed narrowPeak replicated peaks ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF758AJN 1719220 ENCODE Processing Pipeline 4a57555646b7a982b1d87faab88ceec5 https://www.encodeproject.org/files/ENCFF163FNT/@@download/ENCFF163FNT.bigBed mm10 released inconsistent platforms ENCFF001ZTS fastq reads ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1180263061 Bing Ren, UCSD de89ca3dd545769ba021ccac64da4644 SRA:SRR3651668 https://www.encodeproject.org/files/ENCFF001ZTS/@@download/ENCFF001ZTS.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZUB fastq reads ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1109709482 Bing Ren, UCSD 729160ed5d8bbb47230b39888374cca2 SRA:SRR3651666 https://www.encodeproject.org/files/ENCFF001ZUB/@@download/ENCFF001ZUB.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF896XKS bam alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTS, ENCFF806TVZ 991905115 ENCODE Processing Pipeline 30ebf9f877ebb387372b77aed9cdc25e https://www.encodeproject.org/files/ENCFF896XKS/@@download/ENCFF896XKS.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF453CWO fastq reads ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 294185566 Bing Ren, UCSD 11855b06ee6a50a2156eecefc89306b2 SRA:SRR3651667 https://www.encodeproject.org/files/ENCFF453CWO/@@download/ENCFF453CWO.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF538IKE bam alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUB, ENCFF453CWO, ENCFF806TVZ 1198512976 ENCODE Processing Pipeline 30265ed4d1c15f7ab2a94759f112a3a8 https://www.encodeproject.org/files/ENCFF538IKE/@@download/ENCFF538IKE.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF915KGX bed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF896XKS 1287338 ENCODE Processing Pipeline 51ddbcc05efa7e31c437b14825838ddf https://www.encodeproject.org/files/ENCFF915KGX/@@download/ENCFF915KGX.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF961UKF bed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF538IKE, ENCFF807GND, ENCFF841RBB 1155674 ENCODE Processing Pipeline 0c2b9700d5cb21d9b4d7695dfa7ac866 https://www.encodeproject.org/files/ENCFF961UKF/@@download/ENCFF961UKF.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF041TKN bigBed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF999ZYQ 2214291 ENCODE Processing Pipeline ab80801ffb45924538d18a97ac9fb940 https://www.encodeproject.org/files/ENCFF041TKN/@@download/ENCFF041TKN.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF298FBU bigBed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF915KGX 2699311 ENCODE Processing Pipeline a2d0b43b7bc350d4357c60b2eda20292 https://www.encodeproject.org/files/ENCFF298FBU/@@download/ENCFF298FBU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF328BCK bigBed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF961UKF 2410743 ENCODE Processing Pipeline 2a5edeb73a3a84eeca5c6482bd2791e1 https://www.encodeproject.org/files/ENCFF328BCK/@@download/ENCFF328BCK.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF999ZYQ bed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF538IKE, ENCFF807GND, ENCFF841RBB, ENCFF896XKS 862532 ENCODE Processing Pipeline 4e1e5a7097931a40959811480621afa1 https://www.encodeproject.org/files/ENCFF999ZYQ/@@download/ENCFF999ZYQ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF054TFY bigWig signal p-value ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF538IKE, ENCFF807GND, ENCFF841RBB 406367946 ENCODE Processing Pipeline 2531aba006ee92789e747f8c866c8bdc https://www.encodeproject.org/files/ENCFF054TFY/@@download/ENCFF054TFY.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF455MCC bigWig signal p-value ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF896XKS 404629159 ENCODE Processing Pipeline 3e910b3910d8d69c5c8ce2434125d2dd https://www.encodeproject.org/files/ENCFF455MCC/@@download/ENCFF455MCC.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF793HVO bigWig signal p-value ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF538IKE, ENCFF807GND, ENCFF841RBB, ENCFF896XKS 530133063 ENCODE Processing Pipeline 72dbcbad5a73991fbf936a9eb7a7d320 https://www.encodeproject.org/files/ENCFF793HVO/@@download/ENCFF793HVO.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF242KOH bigWig fold change over control ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF896XKS 437065169 ENCODE Processing Pipeline cfa55dd81a55f0812cb4d5f49cb2f1fe https://www.encodeproject.org/files/ENCFF242KOH/@@download/ENCFF242KOH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF608TMC bigWig fold change over control ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF538IKE, ENCFF807GND, ENCFF841RBB 470290489 ENCODE Processing Pipeline 779b34331de044e8fc3d9bc6d8de2ffe https://www.encodeproject.org/files/ENCFF608TMC/@@download/ENCFF608TMC.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF961SJP bigWig fold change over control ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF538IKE, ENCFF807GND, ENCFF841RBB, ENCFF896XKS 732723902 ENCODE Processing Pipeline 9e7ca3fab945a6a657d4a2887ca853cd https://www.encodeproject.org/files/ENCFF961SJP/@@download/ENCFF961SJP.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF301LYW bed narrowPeak replicated peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF915KGX, ENCFF961UKF, ENCFF999ZYQ 743389 ENCODE Processing Pipeline 4617594c0e332f95170eeeea2c01059b https://www.encodeproject.org/files/ENCFF301LYW/@@download/ENCFF301LYW.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF913AAG bigBed narrowPeak replicated peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF301LYW 1610611 ENCODE Processing Pipeline c3f7cc5b3036aea530f5e810fe1d1ac6 https://www.encodeproject.org/files/ENCFF913AAG/@@download/ENCFF913AAG.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF921EQQ bam unfiltered alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTS, ENCFF018NEO 1504392627 ENCODE Processing Pipeline c91496a0756dc201545b1ee4092d2cad https://www.encodeproject.org/files/ENCFF921EQQ/@@download/ENCFF921EQQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF478PXD bam unfiltered alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUB, ENCFF018NEO, ENCFF453CWO 1730734287 ENCODE Processing Pipeline 8467ffc1cb2b56ce950bbd86989ff95e https://www.encodeproject.org/files/ENCFF478PXD/@@download/ENCFF478PXD.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF927XSY bam alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTS, ENCFF018NEO 991704758 ENCODE Processing Pipeline 1341e8cc050e70397ccef48ddba98b3d https://www.encodeproject.org/files/ENCFF927XSY/@@download/ENCFF927XSY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF006ZGX bam alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUB, ENCFF018NEO, ENCFF453CWO 1121683852 ENCODE Processing Pipeline 002469d721f8bf72db5f0bb62ed5922f https://www.encodeproject.org/files/ENCFF006ZGX/@@download/ENCFF006ZGX.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF971JQW bed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF804FRH, ENCFF927XSY 1298726 ENCODE Processing Pipeline 548596dd40acc18f65ffca5a12897709 https://www.encodeproject.org/files/ENCFF971JQW/@@download/ENCFF971JQW.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF970AVK bed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006ZGX, ENCFF010EXO, ENCFF804FRH, ENCFF927XSY 858106 ENCODE Processing Pipeline e3f00727d1ac25a65899dcafed40b516 https://www.encodeproject.org/files/ENCFF970AVK/@@download/ENCFF970AVK.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF702QNU bed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006ZGX, ENCFF804FRH 538107 ENCODE Processing Pipeline ca73a6f9b9c9b97acdb85b802e8830af https://www.encodeproject.org/files/ENCFF702QNU/@@download/ENCFF702QNU.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF027ZQK bigBed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF971JQW 2723326 ENCODE Processing Pipeline 2c469cc71fbdc21c01af8104fa363745 https://www.encodeproject.org/files/ENCFF027ZQK/@@download/ENCFF027ZQK.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF935CTM bigBed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF970AVK 2204822 ENCODE Processing Pipeline 96f16d0b071ec0a8764ddd308294c57a https://www.encodeproject.org/files/ENCFF935CTM/@@download/ENCFF935CTM.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF539GNI bigBed narrowPeak peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF702QNU 1437964 ENCODE Processing Pipeline 5abc1cd150d1b8765c903e27be3b79b6 https://www.encodeproject.org/files/ENCFF539GNI/@@download/ENCFF539GNI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF446QWD bigWig signal p-value ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF804FRH, ENCFF927XSY 413529715 ENCODE Processing Pipeline 464c7b064763f1076701b70dbeedc0ab https://www.encodeproject.org/files/ENCFF446QWD/@@download/ENCFF446QWD.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF688EFH bigWig signal p-value ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006ZGX, ENCFF804FRH 262306317 ENCODE Processing Pipeline 41c03d52d3ed68c851ba7c0d7c03cc66 https://www.encodeproject.org/files/ENCFF688EFH/@@download/ENCFF688EFH.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF709WUF bigWig signal p-value ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006ZGX, ENCFF010EXO, ENCFF804FRH, ENCFF927XSY 529252688 ENCODE Processing Pipeline b7bc0eb665e2f103c369cf025955551a https://www.encodeproject.org/files/ENCFF709WUF/@@download/ENCFF709WUF.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF142YMH bigWig fold change over control ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF804FRH, ENCFF927XSY 439700743 ENCODE Processing Pipeline 616c65327a8c2f15eb423ea5defec57e https://www.encodeproject.org/files/ENCFF142YMH/@@download/ENCFF142YMH.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF214OTI bigWig fold change over control ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006ZGX, ENCFF804FRH 367826845 ENCODE Processing Pipeline 743f0f4a39525b1dc542cf405e36ae44 https://www.encodeproject.org/files/ENCFF214OTI/@@download/ENCFF214OTI.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF800NSG bigWig fold change over control ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006ZGX, ENCFF010EXO, ENCFF804FRH, ENCFF927XSY 727862928 ENCODE Processing Pipeline 38f90f7a4b79cd2296a39d345b5ce8cb https://www.encodeproject.org/files/ENCFF800NSG/@@download/ENCFF800NSG.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF938UBV bed narrowPeak replicated peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF702QNU, ENCFF970AVK, ENCFF971JQW 711042 ENCODE Processing Pipeline 28ab3d0484bbb5ea3b0b2e78157eb733 https://www.encodeproject.org/files/ENCFF938UBV/@@download/ENCFF938UBV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF384WYM bigBed narrowPeak replicated peaks ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF938UBV 1560857 ENCODE Processing Pipeline aa9b912fd3bd85ed3f0566de2694fed4 https://www.encodeproject.org/files/ENCFF384WYM/@@download/ENCFF384WYM.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF499XLQ fastq reads ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1889062307 Bing Ren, UCSD b2f56451b1db58112d3b44055fd0d57e SRA:SRR3651855 https://www.encodeproject.org/files/ENCFF499XLQ/@@download/ENCFF499XLQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released inconsistent platforms ENCFF199TIW fastq reads ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1922429634 Bing Ren, UCSD 8f0d671ea2a2eac3a5e8ac8e840071d1 SRA:SRR3651856 https://www.encodeproject.org/files/ENCFF199TIW/@@download/ENCFF199TIW.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms ENCFF164QXR bam alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF499XLQ, ENCFF806TVZ 1492209477 ENCODE Processing Pipeline db9399c54c795cdf365d240754ce6d8e https://www.encodeproject.org/files/ENCFF164QXR/@@download/ENCFF164QXR.bam mm10-minimal archived inconsistent platforms ENCFF474HRN bam alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF199TIW, ENCFF806TVZ 1586760509 ENCODE Processing Pipeline f99ed9a0f5521937a0776619b7249d56 https://www.encodeproject.org/files/ENCFF474HRN/@@download/ENCFF474HRN.bam mm10-minimal archived inconsistent platforms ENCFF619BQV bed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF474HRN, ENCFF667WJC 858163 ENCODE Processing Pipeline 6e3487f86175d69fe7c4396274649140 https://www.encodeproject.org/files/ENCFF619BQV/@@download/ENCFF619BQV.bed.gz mm10-minimal archived inconsistent platforms ENCFF360ESA bed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164QXR, ENCFF263OMS, ENCFF667WJC 780291 ENCODE Processing Pipeline 5794a0b3cf2252342227ff51be10887e https://www.encodeproject.org/files/ENCFF360ESA/@@download/ENCFF360ESA.bed.gz mm10-minimal archived inconsistent platforms ENCFF186ZQY bigBed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF619BQV 2262751 ENCODE Processing Pipeline 98650e765feb138d12f7ddc3870fb16a https://www.encodeproject.org/files/ENCFF186ZQY/@@download/ENCFF186ZQY.bigBed mm10-minimal archived inconsistent platforms ENCFF104YPG bed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164QXR, ENCFF263OMS, ENCFF474HRN, ENCFF667WJC 740337 ENCODE Processing Pipeline d76a7b9337f7e03e8606167ab48023a4 https://www.encodeproject.org/files/ENCFF104YPG/@@download/ENCFF104YPG.bed.gz mm10-minimal archived inconsistent platforms ENCFF056DXT bigWig signal p-value ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF474HRN, ENCFF667WJC 712470872 ENCODE Processing Pipeline 9bdd6c811e5a7c4287d642d0802dac2c https://www.encodeproject.org/files/ENCFF056DXT/@@download/ENCFF056DXT.bigWig mm10-minimal archived inconsistent platforms ENCFF416PRO bigBed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF360ESA 2060025 ENCODE Processing Pipeline 349f0dd221efdc847cbd29ef48559ea9 https://www.encodeproject.org/files/ENCFF416PRO/@@download/ENCFF416PRO.bigBed mm10-minimal archived inconsistent platforms ENCFF704NAR bigBed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF104YPG 1927368 ENCODE Processing Pipeline 71336faaa9dc87d9fdcb8cd0adb651d6 https://www.encodeproject.org/files/ENCFF704NAR/@@download/ENCFF704NAR.bigBed mm10-minimal archived inconsistent platforms ENCFF233NIN bigWig signal p-value ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164QXR, ENCFF263OMS, ENCFF667WJC 749743817 ENCODE Processing Pipeline 2a85f47b7cc82cd4a372cd9f2a26baba https://www.encodeproject.org/files/ENCFF233NIN/@@download/ENCFF233NIN.bigWig mm10-minimal archived inconsistent platforms ENCFF727VCH bigWig signal p-value ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164QXR, ENCFF263OMS, ENCFF474HRN, ENCFF667WJC 980361303 ENCODE Processing Pipeline e13830199d8183b9f628818391f9f810 https://www.encodeproject.org/files/ENCFF727VCH/@@download/ENCFF727VCH.bigWig mm10-minimal archived inconsistent platforms ENCFF426QPN bigWig fold change over control ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF474HRN, ENCFF667WJC 775798246 ENCODE Processing Pipeline b1b8f35dfd60388b57638c4954f96226 https://www.encodeproject.org/files/ENCFF426QPN/@@download/ENCFF426QPN.bigWig mm10-minimal archived inconsistent platforms ENCFF884KZN bigWig fold change over control ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164QXR, ENCFF263OMS, ENCFF667WJC 740233159 ENCODE Processing Pipeline 47ad94d9a862c8dba83f7239065cf114 https://www.encodeproject.org/files/ENCFF884KZN/@@download/ENCFF884KZN.bigWig mm10-minimal archived inconsistent platforms ENCFF245DFQ bed narrowPeak replicated peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF104YPG, ENCFF360ESA, ENCFF619BQV 515469 ENCODE Processing Pipeline 53fc5126c18457454bbc539a5c6b75be https://www.encodeproject.org/files/ENCFF245DFQ/@@download/ENCFF245DFQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF763SZS bigWig fold change over control ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164QXR, ENCFF263OMS, ENCFF474HRN, ENCFF667WJC 1124618765 ENCODE Processing Pipeline f5fb94a55f5fd60b7aca686fa04db8d9 https://www.encodeproject.org/files/ENCFF763SZS/@@download/ENCFF763SZS.bigWig mm10-minimal archived inconsistent platforms ENCFF879VSO bigBed narrowPeak replicated peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245DFQ 1426677 ENCODE Processing Pipeline 386d4921a12de2cc569a8e0d6828d51d https://www.encodeproject.org/files/ENCFF879VSO/@@download/ENCFF879VSO.bigBed mm10-minimal archived inconsistent platforms ENCFF023FHS bam unfiltered alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF199TIW 2335150831 ENCODE Processing Pipeline 5d7674e0962723f1ac7410aea13ceb37 https://www.encodeproject.org/files/ENCFF023FHS/@@download/ENCFF023FHS.bam mm10 released inconsistent platforms ENCFF975JLV bam unfiltered alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF499XLQ 2282751736 ENCODE Processing Pipeline d6c613b0dba681c4be938bdc6b6818b1 https://www.encodeproject.org/files/ENCFF975JLV/@@download/ENCFF975JLV.bam mm10 released inconsistent platforms ENCFF767YIB bam alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF499XLQ 1491837366 ENCODE Processing Pipeline c450fcb73ca3fa74de20a330d2bbb360 https://www.encodeproject.org/files/ENCFF767YIB/@@download/ENCFF767YIB.bam mm10 released inconsistent platforms ENCFF723LHU bam alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF199TIW 1586345848 ENCODE Processing Pipeline 3eccea9637e5fa828823a04148293554 https://www.encodeproject.org/files/ENCFF723LHU/@@download/ENCFF723LHU.bam mm10 released inconsistent platforms ENCFF673DDZ bed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF723LHU 845394 ENCODE Processing Pipeline c407e7521659b3b4e4a13c7ef6923596 https://www.encodeproject.org/files/ENCFF673DDZ/@@download/ENCFF673DDZ.bed.gz mm10 released inconsistent platforms ENCFF533YVS bigBed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF673DDZ 2225139 ENCODE Processing Pipeline c995143c6ffb8ce7f41d53e553a351aa https://www.encodeproject.org/files/ENCFF533YVS/@@download/ENCFF533YVS.bigBed mm10 released inconsistent platforms ENCFF179WOU bed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF767YIB 807424 ENCODE Processing Pipeline 94995746fcef477d65813a3094925de2 https://www.encodeproject.org/files/ENCFF179WOU/@@download/ENCFF179WOU.bed.gz mm10 released inconsistent platforms ENCFF823NSY bed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF514GVM, ENCFF723LHU, ENCFF767YIB 970353 ENCODE Processing Pipeline 024a727810599400206214fee37c681a https://www.encodeproject.org/files/ENCFF823NSY/@@download/ENCFF823NSY.bed.gz mm10 released inconsistent platforms ENCFF682EBB bigBed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF823NSY 2451354 ENCODE Processing Pipeline ae0cfccd7a21dad1c9101b489980612b https://www.encodeproject.org/files/ENCFF682EBB/@@download/ENCFF682EBB.bigBed mm10 released inconsistent platforms ENCFF404LZI bigBed narrowPeak peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF179WOU 2119127 ENCODE Processing Pipeline f8f0e2138cbfbf2d65973716ed52d83a https://www.encodeproject.org/files/ENCFF404LZI/@@download/ENCFF404LZI.bigBed mm10 released inconsistent platforms ENCFF475TAQ bigWig signal p-value ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF723LHU 712214950 ENCODE Processing Pipeline f01922909e057f94a8e2be841bd00b98 https://www.encodeproject.org/files/ENCFF475TAQ/@@download/ENCFF475TAQ.bigWig mm10 released inconsistent platforms ENCFF050CYS bigWig signal p-value ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF767YIB 865086361 ENCODE Processing Pipeline c4f8617ce8442cf311c0c0eee4a284e5 https://www.encodeproject.org/files/ENCFF050CYS/@@download/ENCFF050CYS.bigWig mm10 released inconsistent platforms ENCFF126ZFU bigWig signal p-value ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF514GVM, ENCFF723LHU, ENCFF767YIB 1028624436 ENCODE Processing Pipeline 67657592b4c48d2ea971f93488d0a909 https://www.encodeproject.org/files/ENCFF126ZFU/@@download/ENCFF126ZFU.bigWig mm10 released inconsistent platforms ENCFF407SSP bigWig fold change over control ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF723LHU 816267767 ENCODE Processing Pipeline 9f3387fb7e1c70df4412668caadf5f79 https://www.encodeproject.org/files/ENCFF407SSP/@@download/ENCFF407SSP.bigWig mm10 released inconsistent platforms ENCFF860UZM bigWig fold change over control ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF514GVM, ENCFF767YIB 783233284 ENCODE Processing Pipeline 665ce92a4480139a399388612a5a3b7d https://www.encodeproject.org/files/ENCFF860UZM/@@download/ENCFF860UZM.bigWig mm10 released inconsistent platforms ENCFF641CTW bigWig fold change over control ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF514GVM, ENCFF723LHU, ENCFF767YIB 1226837296 ENCODE Processing Pipeline f24e3be18b422daa29b93007f807aa7c https://www.encodeproject.org/files/ENCFF641CTW/@@download/ENCFF641CTW.bigWig mm10 released inconsistent platforms ENCFF973LJC bed narrowPeak replicated peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF179WOU, ENCFF673DDZ, ENCFF823NSY 516056 ENCODE Processing Pipeline af365327b869e5c573825dc67ae386b7 https://www.encodeproject.org/files/ENCFF973LJC/@@download/ENCFF973LJC.bed.gz mm10 released inconsistent platforms ENCFF669LUO bigBed narrowPeak replicated peaks ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF973LJC 1418325 ENCODE Processing Pipeline 1009fbb76f7bac213f86cb910e9757c9 https://www.encodeproject.org/files/ENCFF669LUO/@@download/ENCFF669LUO.bigBed mm10 released inconsistent platforms ENCFF002DSK fastq reads ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 36 single-ended 1024845629 Bing Ren, UCSD 11df8259dcb4ceb64039c734749ff258 SRA:SRR3652395 https://www.encodeproject.org/files/ENCFF002DSK/@@download/ENCFF002DSK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARI/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSL fastq reads ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1038756114 Bing Ren, UCSD 6e1c9e1ac8bc5f8c3e23da2271ab452c SRA:SRR3652396 https://www.encodeproject.org/files/ENCFF002DSL/@@download/ENCFF002DSL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARI/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSW fastq reads ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 2528322017 Bing Ren, UCSD 09b9e978f698e3c097bdd498d1889f1b SRA:SRR3652397 https://www.encodeproject.org/files/ENCFF002DSW/@@download/ENCFF002DSW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARL/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF978HOK bam alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002DSK, ENCFF002DSL, ENCFF806TVZ 1248831237 ENCODE Processing Pipeline 9ed6ead73461218e99e132e878a6301f https://www.encodeproject.org/files/ENCFF978HOK/@@download/ENCFF978HOK.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF892YDK bam alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002DSW, ENCFF806TVZ 1394329395 ENCODE Processing Pipeline 8404bf60c2dc4ffe7edf7342c40d9fa8 https://www.encodeproject.org/files/ENCFF892YDK/@@download/ENCFF892YDK.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF348JPJ bed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF006YKR, ENCFF946XCS, ENCFF978HOK 288976 ENCODE Processing Pipeline e7625c72ea96b3cd62ec3bd05df4c497 https://www.encodeproject.org/files/ENCFF348JPJ/@@download/ENCFF348JPJ.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF262ADT bigBed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF348JPJ 502762 ENCODE Processing Pipeline 118565edc0bada41ad3624a6b06e26ea https://www.encodeproject.org/files/ENCFF262ADT/@@download/ENCFF262ADT.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF307MMP bigBed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF601DQA 368878 ENCODE Processing Pipeline b52daf69f4971985754348d56e7cdc2b https://www.encodeproject.org/files/ENCFF307MMP/@@download/ENCFF307MMP.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF861ZSC bigBed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF463NJV 240456 ENCODE Processing Pipeline 6e730f5e820daab840f68ba60b9dd466 https://www.encodeproject.org/files/ENCFF861ZSC/@@download/ENCFF861ZSC.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF463NJV bed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF006YKR, ENCFF892YDK, ENCFF946XCS, ENCFF978HOK 80889 ENCODE Processing Pipeline 835228aa7e2eda6fc46ecf12fef09b4d https://www.encodeproject.org/files/ENCFF463NJV/@@download/ENCFF463NJV.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF601DQA bed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF006YKR, ENCFF892YDK, ENCFF946XCS 190644 ENCODE Processing Pipeline ccdf29b11f6071bf2e17be267b8a8be7 https://www.encodeproject.org/files/ENCFF601DQA/@@download/ENCFF601DQA.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF024RFW bigWig signal p-value ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF006YKR, ENCFF946XCS, ENCFF978HOK 419171994 ENCODE Processing Pipeline c5533035b1d39e2d18da78d08f2e6967 https://www.encodeproject.org/files/ENCFF024RFW/@@download/ENCFF024RFW.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF660ZGI bigWig signal p-value ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF006YKR, ENCFF892YDK, ENCFF946XCS 542083623 ENCODE Processing Pipeline 4cdad74ad03d2770c2609b100b781c42 https://www.encodeproject.org/files/ENCFF660ZGI/@@download/ENCFF660ZGI.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF225GUR bigWig signal p-value ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF006YKR, ENCFF892YDK, ENCFF946XCS, ENCFF978HOK 633905810 ENCODE Processing Pipeline 467d26ce1212bfcad8d316cf609ccbff https://www.encodeproject.org/files/ENCFF225GUR/@@download/ENCFF225GUR.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF055VNF bigWig fold change over control ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF006YKR, ENCFF946XCS, ENCFF978HOK 527358361 ENCODE Processing Pipeline 3cc13944b483ac959e636d80e7c66b18 https://www.encodeproject.org/files/ENCFF055VNF/@@download/ENCFF055VNF.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF698GOQ bigWig fold change over control ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF006YKR, ENCFF892YDK, ENCFF946XCS 608495329 ENCODE Processing Pipeline 4f18af4761819a75c209c65cbfbdf8d9 https://www.encodeproject.org/files/ENCFF698GOQ/@@download/ENCFF698GOQ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF012ZXY bigWig fold change over control ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF006YKR, ENCFF892YDK, ENCFF946XCS, ENCFF978HOK 902181303 ENCODE Processing Pipeline f65e21cd8695297668949ec56792b4f3 https://www.encodeproject.org/files/ENCFF012ZXY/@@download/ENCFF012ZXY.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF363WYE bed narrowPeak replicated peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF348JPJ, ENCFF463NJV, ENCFF601DQA 49018 ENCODE Processing Pipeline 03a0f39db1de5e4a17a62c0be154b896 https://www.encodeproject.org/files/ENCFF363WYE/@@download/ENCFF363WYE.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF297FQI bigBed narrowPeak replicated peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF363WYE 169465 ENCODE Processing Pipeline e49f3afa191460f385aea7a10bb87068 https://www.encodeproject.org/files/ENCFF297FQI/@@download/ENCFF297FQI.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF617CGK bam unfiltered alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSK, ENCFF002DSL, ENCFF018NEO 2608582014 ENCODE Processing Pipeline ce65b6fbd1e3c795cdf6b04ed8eeafe6 https://www.encodeproject.org/files/ENCFF617CGK/@@download/ENCFF617CGK.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF438QYX bam unfiltered alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSW, ENCFF018NEO 2641470590 ENCODE Processing Pipeline 5add728c13b7dc6081ed8cafb1bc58be https://www.encodeproject.org/files/ENCFF438QYX/@@download/ENCFF438QYX.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF946SFS bam alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSK, ENCFF002DSL, ENCFF018NEO 1248220643 ENCODE Processing Pipeline ce31ccd4825f417e96201420d7b243a3 https://www.encodeproject.org/files/ENCFF946SFS/@@download/ENCFF946SFS.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF102LST bam alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSW, ENCFF018NEO 1393703516 ENCODE Processing Pipeline 820a938519c15ab63addf6606bebb7b7 https://www.encodeproject.org/files/ENCFF102LST/@@download/ENCFF102LST.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF639EDZ bed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF946SFS 293527 ENCODE Processing Pipeline 287fdff87098ab763b7a6deea59a4101 https://www.encodeproject.org/files/ENCFF639EDZ/@@download/ENCFF639EDZ.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF899WRV bed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF102LST, ENCFF482UTL 13857 ENCODE Processing Pipeline 8fe24f45a5c76be8d3212370385bbe32 https://www.encodeproject.org/files/ENCFF899WRV/@@download/ENCFF899WRV.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF946MNI bed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF102LST, ENCFF292SSW, ENCFF482UTL, ENCFF946SFS 78604 ENCODE Processing Pipeline 92090920a17cd4f0f33a7da8f69e1a6c https://www.encodeproject.org/files/ENCFF946MNI/@@download/ENCFF946MNI.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF012GIU bigBed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF639EDZ 512180 ENCODE Processing Pipeline 76ac48eb69f39fe1ac94a5965579e95d https://www.encodeproject.org/files/ENCFF012GIU/@@download/ENCFF012GIU.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF404VLQ bigBed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF899WRV 116006 ENCODE Processing Pipeline 6f5eaa53b060d3d17a7169e20cea4711 https://www.encodeproject.org/files/ENCFF404VLQ/@@download/ENCFF404VLQ.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF787WBO bigBed narrowPeak peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF946MNI 237351 ENCODE Processing Pipeline eac815c346e7bc977296f30f5bec56a0 https://www.encodeproject.org/files/ENCFF787WBO/@@download/ENCFF787WBO.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF069KGR bigWig signal p-value ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF946SFS 531795689 ENCODE Processing Pipeline db3e81153772deb0e8828895495cf3cc https://www.encodeproject.org/files/ENCFF069KGR/@@download/ENCFF069KGR.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF338AWD bigWig signal p-value ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF102LST, ENCFF482UTL 320393963 ENCODE Processing Pipeline f47cd16fabf174510fa48b041794a3f5 https://www.encodeproject.org/files/ENCFF338AWD/@@download/ENCFF338AWD.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF151BAS bigWig signal p-value ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF102LST, ENCFF292SSW, ENCFF482UTL, ENCFF946SFS 630176502 ENCODE Processing Pipeline 831150db2a3ee0eed7cca7a60679ff2a https://www.encodeproject.org/files/ENCFF151BAS/@@download/ENCFF151BAS.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF957XPJ bigWig fold change over control ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF946SFS 525701133 ENCODE Processing Pipeline e0de9249866c102dcddf316ac6df6ff0 https://www.encodeproject.org/files/ENCFF957XPJ/@@download/ENCFF957XPJ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF278FUY bigWig fold change over control ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF102LST, ENCFF482UTL 506617800 ENCODE Processing Pipeline df9ddebf828086df74d26430f626cddf https://www.encodeproject.org/files/ENCFF278FUY/@@download/ENCFF278FUY.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF591NXE bigWig fold change over control ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF102LST, ENCFF292SSW, ENCFF482UTL, ENCFF946SFS 899865669 ENCODE Processing Pipeline 52e6550fd80317ae6e8016a522e9bdd7 https://www.encodeproject.org/files/ENCFF591NXE/@@download/ENCFF591NXE.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF955UMB bed narrowPeak replicated peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF639EDZ, ENCFF899WRV, ENCFF946MNI 42940 ENCODE Processing Pipeline ab554a541aff2599f2da78e70821f90b https://www.encodeproject.org/files/ENCFF955UMB/@@download/ENCFF955UMB.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF070NSD bigBed narrowPeak replicated peaks ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF955UMB 185078 ENCODE Processing Pipeline ae9207414b4333e46a5d6aaeb55369ca https://www.encodeproject.org/files/ENCFF070NSD/@@download/ENCFF070NSD.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002AET fastq reads ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1957503434 Bing Ren, UCSD eab963d594ebfdc0bd4fec9a4b464967 SRA:SRR3651266 https://www.encodeproject.org/files/ENCFF002AET/@@download/ENCFF002AET.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released moderate library complexity, mild to moderate bottlenecking ENCFF002AEV fastq reads ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2106307552 Bing Ren, UCSD ae2b80a851e838ebc2097c51eb6ac6e3 SRA:SRR3651265 https://www.encodeproject.org/files/ENCFF002AEV/@@download/ENCFF002AEV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APW/ released moderate library complexity, mild to moderate bottlenecking ENCFF433RPH bam alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AEV, ENCFF806TVZ 1328740320 ENCODE Processing Pipeline ddee366eb9d643439d49ea4c9edfa268 https://www.encodeproject.org/files/ENCFF433RPH/@@download/ENCFF433RPH.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF992FFS bam alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AET, ENCFF806TVZ 1092417651 ENCODE Processing Pipeline 7378a283b39699b1d8ea828cce71c3e0 https://www.encodeproject.org/files/ENCFF992FFS/@@download/ENCFF992FFS.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF050ONE bed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF433RPH, ENCFF716BBX 1250800 ENCODE Processing Pipeline 62714a68349fe9013bb3e7dad7ef0d0f https://www.encodeproject.org/files/ENCFF050ONE/@@download/ENCFF050ONE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF976INX bed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF992FFS 1452384 ENCODE Processing Pipeline 7545872592e196f2f700cb8189b2aa21 https://www.encodeproject.org/files/ENCFF976INX/@@download/ENCFF976INX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF132ORO bigBed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF050ONE 3782670 ENCODE Processing Pipeline 69a33d2ccc648c17bd4225ad432f3fe1 https://www.encodeproject.org/files/ENCFF132ORO/@@download/ENCFF132ORO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF846GDU bed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417WKH, ENCFF433RPH, ENCFF716BBX, ENCFF992FFS 1681742 ENCODE Processing Pipeline 7d6e272c289c8eacd012fa6b8761db56 https://www.encodeproject.org/files/ENCFF846GDU/@@download/ENCFF846GDU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF092LDO bigBed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF976INX 4365547 ENCODE Processing Pipeline df41547a6cd6268d7ee1aa6823a382d9 https://www.encodeproject.org/files/ENCFF092LDO/@@download/ENCFF092LDO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF123FFJ bigBed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF846GDU 4892824 ENCODE Processing Pipeline 4f38865dff0fe0225cbcc60aa2644188 https://www.encodeproject.org/files/ENCFF123FFJ/@@download/ENCFF123FFJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF925ETG bigWig signal p-value ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF433RPH, ENCFF716BBX 546570794 ENCODE Processing Pipeline f2ad7d42dcc8540109cc0a424faf2caf https://www.encodeproject.org/files/ENCFF925ETG/@@download/ENCFF925ETG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF012DEV bigWig signal p-value ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF992FFS 506690562 ENCODE Processing Pipeline 0d7390a90a2fc0b4ea83da021b6fb4c8 https://www.encodeproject.org/files/ENCFF012DEV/@@download/ENCFF012DEV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF163RNJ bigWig signal p-value ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417WKH, ENCFF433RPH, ENCFF716BBX, ENCFF992FFS 753588065 ENCODE Processing Pipeline 94810c2837cab9fc22ca66cb1753ccaf https://www.encodeproject.org/files/ENCFF163RNJ/@@download/ENCFF163RNJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF147GGD bigWig fold change over control ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF433RPH, ENCFF716BBX 477168171 ENCODE Processing Pipeline b57aa0e01dcbc710aca2bf02f49c87cc https://www.encodeproject.org/files/ENCFF147GGD/@@download/ENCFF147GGD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF309JWE bigWig fold change over control ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF992FFS 421485300 ENCODE Processing Pipeline ebb32eae3b4cac13e23c4ec09e72d268 https://www.encodeproject.org/files/ENCFF309JWE/@@download/ENCFF309JWE.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF351JXZ bigWig fold change over control ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417WKH, ENCFF433RPH, ENCFF716BBX, ENCFF992FFS 870841247 ENCODE Processing Pipeline de43d4a559d3c0e1e1f6604863a39dd0 https://www.encodeproject.org/files/ENCFF351JXZ/@@download/ENCFF351JXZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF343WHM bed narrowPeak replicated peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF050ONE, ENCFF846GDU, ENCFF976INX 1229866 ENCODE Processing Pipeline bfe57262afce58a3602a95433259c331 https://www.encodeproject.org/files/ENCFF343WHM/@@download/ENCFF343WHM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF446ETH bigBed narrowPeak replicated peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF343WHM 2846497 ENCODE Processing Pipeline 61ef62adcd0d8dc0d90201df023b8fce https://www.encodeproject.org/files/ENCFF446ETH/@@download/ENCFF446ETH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF327XOM bam unfiltered alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AET, ENCFF018NEO 1973273159 ENCODE Processing Pipeline 2d78a6671ad0798e0d91e3d60ac21ccb https://www.encodeproject.org/files/ENCFF327XOM/@@download/ENCFF327XOM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF607SNY bam unfiltered alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AEV, ENCFF018NEO 2176798457 ENCODE Processing Pipeline e85de1e60617e499ae711367ebc0cc2b https://www.encodeproject.org/files/ENCFF607SNY/@@download/ENCFF607SNY.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF714EXR bam alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AET, ENCFF018NEO 1092266120 ENCODE Processing Pipeline 982ac251ac66a4d23478774a1d5ffbdb https://www.encodeproject.org/files/ENCFF714EXR/@@download/ENCFF714EXR.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF589HQA bam alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AEV, ENCFF018NEO 1328509348 ENCODE Processing Pipeline 2d902b320ae92be91bcd281c49f80cfb https://www.encodeproject.org/files/ENCFF589HQA/@@download/ENCFF589HQA.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF473RPJ bed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416UQK, ENCFF589HQA 1251141 ENCODE Processing Pipeline 6baedd1cb7085b0a5e0317aa5078741b https://www.encodeproject.org/files/ENCFF473RPJ/@@download/ENCFF473RPJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF275FYA bed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF714EXR 1460522 ENCODE Processing Pipeline 4eae5e6ab732a9a8971f3c968875d2b4 https://www.encodeproject.org/files/ENCFF275FYA/@@download/ENCFF275FYA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF452SNO bed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF416UQK, ENCFF589HQA, ENCFF714EXR 1683523 ENCODE Processing Pipeline d4f18bf5d3b04092f26fd1f2db308684 https://www.encodeproject.org/files/ENCFF452SNO/@@download/ENCFF452SNO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF766VAZ bigBed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF473RPJ 3785131 ENCODE Processing Pipeline a4f160c0e8ff8fa29236f2b435734ae6 https://www.encodeproject.org/files/ENCFF766VAZ/@@download/ENCFF766VAZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF863TTC bigBed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF275FYA 4397287 ENCODE Processing Pipeline 771683d3b878f63a3266d7e74e67bbb1 https://www.encodeproject.org/files/ENCFF863TTC/@@download/ENCFF863TTC.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF465ALI bigBed narrowPeak peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF452SNO 4895039 ENCODE Processing Pipeline 103fdc0830f2c64394e7e5313f743eec https://www.encodeproject.org/files/ENCFF465ALI/@@download/ENCFF465ALI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF262UJT bigWig signal p-value ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416UQK, ENCFF589HQA 457838079 ENCODE Processing Pipeline cbaa0d3523e557346d98e1e0e8343db6 https://www.encodeproject.org/files/ENCFF262UJT/@@download/ENCFF262UJT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF312CWM bigWig signal p-value ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF714EXR 400580139 ENCODE Processing Pipeline 89220bd8604b2d543fa10e2c755fcee6 https://www.encodeproject.org/files/ENCFF312CWM/@@download/ENCFF312CWM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF769VIT bigWig signal p-value ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF416UQK, ENCFF589HQA, ENCFF714EXR 702059432 ENCODE Processing Pipeline 69b927b2fd1d343bf516bb186f6fc610 https://www.encodeproject.org/files/ENCFF769VIT/@@download/ENCFF769VIT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF487ZYK bigWig fold change over control ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416UQK, ENCFF589HQA 478159357 ENCODE Processing Pipeline 8b9bd796373c7ff6b26cc4715db6634a https://www.encodeproject.org/files/ENCFF487ZYK/@@download/ENCFF487ZYK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF259KPB bigWig fold change over control ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF714EXR 426582027 ENCODE Processing Pipeline 59fc19b77fe58be4050e2b2c6453f315 https://www.encodeproject.org/files/ENCFF259KPB/@@download/ENCFF259KPB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF774AQE bigWig fold change over control ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF416UQK, ENCFF589HQA, ENCFF714EXR 872616025 ENCODE Processing Pipeline 49a1281e33a055d7482a4b4a2a0911cd https://www.encodeproject.org/files/ENCFF774AQE/@@download/ENCFF774AQE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF157AZQ bed narrowPeak replicated peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF275FYA, ENCFF452SNO, ENCFF473RPJ 1232729 ENCODE Processing Pipeline d93b20679e54dfe5dbe76df0e5e960dd https://www.encodeproject.org/files/ENCFF157AZQ/@@download/ENCFF157AZQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF958YGX bigBed narrowPeak replicated peaks ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF157AZQ 2852042 ENCODE Processing Pipeline f24c5c7ddc3310047919771e89254fa8 https://www.encodeproject.org/files/ENCFF958YGX/@@download/ENCFF958YGX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001MPH bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MPN 726490167 Ross Hardison, PennState b508ec2542bce708b5c853c316bb463f https://www.encodeproject.org/files/ENCFF001MPH/@@download/ENCFF001MPH.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MPI bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MPP 1098652475 Ross Hardison, PennState cf78ef6afb127a363aa393a74f26fe12 https://www.encodeproject.org/files/ENCFF001MPI/@@download/ENCFF001MPI.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MPJ bigBed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFG 335787 Ross Hardison, PennState f6195224bbfc19b4dce8cf27e05283da https://www.encodeproject.org/files/ENCFF001MPJ/@@download/ENCFF001MPJ.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MPK bigBed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFH 231474 Ross Hardison, PennState 2da0ef1a23d9cc9d326724ebd9d2e12d https://www.encodeproject.org/files/ENCFF001MPK/@@download/ENCFF001MPK.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MPL bigBed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFI 257215 Ross Hardison, PennState 1b1490bef05ca1cb490c59c12ec3298d https://www.encodeproject.org/files/ENCFF001MPL/@@download/ENCFF001MPL.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MPM bigWig signal ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2942733014 Ross Hardison, PennState 0bf363e406767f8fcd427598ef23781c https://www.encodeproject.org/files/ENCFF001MPM/@@download/ENCFF001MPM.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MPN fastq reads ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 569247428 Ross Hardison, PennState ae7b53f47a2b2820ef60d3f3bd861f13 https://www.encodeproject.org/files/ENCFF001MPN/@@download/ENCFF001MPN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MPO bigWig signal ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3679495816 Ross Hardison, PennState fc9ff8bd708564b1f4c3d45f1204df5f https://www.encodeproject.org/files/ENCFF001MPO/@@download/ENCFF001MPO.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MPP fastq reads ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 854143018 Ross Hardison, PennState c0812f961ec1c6fcc58818a990421be3 https://www.encodeproject.org/files/ENCFF001MPP/@@download/ENCFF001MPP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MPQ bigWig signal ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 4617193394 Ross Hardison, PennState 3c0425e1f1805645b26a7a373e816d99 https://www.encodeproject.org/files/ENCFF001MPQ/@@download/ENCFF001MPQ.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFG bed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 134555 Ross Hardison, PennState de42d1b1b655238552344d86bc62d72f https://www.encodeproject.org/files/ENCFF001YFG/@@download/ENCFF001YFG.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFH bed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 105689 Ross Hardison, PennState c4d55b0a83ce5fdacc2a452f3ec386aa https://www.encodeproject.org/files/ENCFF001YFH/@@download/ENCFF001YFH.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFI bed broadPeak peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 127342 Ross Hardison, PennState 43b6f99f90ddee89c039b95d7e5c2b8c https://www.encodeproject.org/files/ENCFF001YFI/@@download/ENCFF001YFI.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF668VVF bam unfiltered alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPP, ENCFF018NEO 1058821924 ENCODE Processing Pipeline f7d63655e4a4b52dd0059f6af3c85eab https://www.encodeproject.org/files/ENCFF668VVF/@@download/ENCFF668VVF.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF209XZQ bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPP, ENCFF018NEO 733770678 ENCODE Processing Pipeline 4fc9f869082dd3a8580586f666a88217 https://www.encodeproject.org/files/ENCFF209XZQ/@@download/ENCFF209XZQ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF736VQJ bam unfiltered alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MPN, ENCFF018NEO 761336385 ENCODE Processing Pipeline a041486f7666ed07b21e87be484ee70c https://www.encodeproject.org/files/ENCFF736VQJ/@@download/ENCFF736VQJ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF178CJO bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MPN, ENCFF018NEO 506585997 ENCODE Processing Pipeline 2ea2fda4b76b94993b4e9ec0232bf10d https://www.encodeproject.org/files/ENCFF178CJO/@@download/ENCFF178CJO.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF005KHO bigWig signal p-value ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF178CJO, ENCFF984QUA 728961411 ENCODE Processing Pipeline c2a259f2db106b10003f48f5713fdb5e https://www.encodeproject.org/files/ENCFF005KHO/@@download/ENCFF005KHO.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF615KKN bigWig signal p-value ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF209XZQ, ENCFF984QUA 926642119 ENCODE Processing Pipeline 3dde2335fbdfedae942700cf4bf81dee https://www.encodeproject.org/files/ENCFF615KKN/@@download/ENCFF615KKN.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF108CIB bigWig signal p-value ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF178CJO, ENCFF209XZQ, ENCFF984QUA 995229299 ENCODE Processing Pipeline 2ebf13e1ffe7ca1e30683b1fc8d6c854 https://www.encodeproject.org/files/ENCFF108CIB/@@download/ENCFF108CIB.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF177RDY bigWig fold change over control ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF178CJO, ENCFF984QUA 555237555 ENCODE Processing Pipeline b6e4dfcd8c315fbdaae247e10bc0de8f https://www.encodeproject.org/files/ENCFF177RDY/@@download/ENCFF177RDY.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF812BEF bigWig fold change over control ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF209XZQ, ENCFF984QUA 762987935 ENCODE Processing Pipeline d2835ab7a27b1029139a9504b8498181 https://www.encodeproject.org/files/ENCFF812BEF/@@download/ENCFF812BEF.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF263FFV bigWig fold change over control ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF178CJO, ENCFF209XZQ, ENCFF984QUA 993931647 ENCODE Processing Pipeline 6dce1cb9ef5f0c203ee80102a0b4e882 https://www.encodeproject.org/files/ENCFF263FFV/@@download/ENCFF263FFV.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF037UNY bed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF178CJO, ENCFF984QUA 5610054 ENCODE Processing Pipeline 8a8b2fbb3d5cedd8727980cc79c8f896 https://www.encodeproject.org/files/ENCFF037UNY/@@download/ENCFF037UNY.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF035IKI bigBed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF578SUN 13418123 ENCODE Processing Pipeline 6cd22bd6923ba0af2aeedda3e83dff16 https://www.encodeproject.org/files/ENCFF035IKI/@@download/ENCFF035IKI.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF578SUN bed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF209XZQ, ENCFF984QUA 6116831 ENCODE Processing Pipeline c7401392b52dce64e930ada6d240ce05 https://www.encodeproject.org/files/ENCFF578SUN/@@download/ENCFF578SUN.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF461KXI bed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF178CJO, ENCFF209XZQ, ENCFF984QUA 6569225 ENCODE Processing Pipeline f6b570d218c904382f84389e0e33f028 https://www.encodeproject.org/files/ENCFF461KXI/@@download/ENCFF461KXI.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF226JNV bigBed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF037UNY 13343653 ENCODE Processing Pipeline e100f9de0bc585e8b18fcfb5bf377cd5 https://www.encodeproject.org/files/ENCFF226JNV/@@download/ENCFF226JNV.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF691HWC bed narrowPeak optimal idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF037UNY, ENCFF461KXI, ENCFF547MET, ENCFF578SUN 132433 ENCODE Processing Pipeline b0217e14217025e90d9f7a5e014f0a30 https://www.encodeproject.org/files/ENCFF691HWC/@@download/ENCFF691HWC.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF801VSG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF439DUG 303048 ENCODE Processing Pipeline 54e924f60eea2fbb1e03f9db66fbc504 https://www.encodeproject.org/files/ENCFF801VSG/@@download/ENCFF801VSG.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF090CXQ bigBed narrowPeak peaks and background as input for IDR ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF461KXI 13494840 ENCODE Processing Pipeline 073b842b4d938064115f6d9127b23221 https://www.encodeproject.org/files/ENCFF090CXQ/@@download/ENCFF090CXQ.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF093SSV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF691HWC 301869 ENCODE Processing Pipeline a6af75fa068bfc1f7169503a4ee9661a https://www.encodeproject.org/files/ENCFF093SSV/@@download/ENCFF093SSV.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF439DUG bed narrowPeak conservative idr thresholded peaks ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF037UNY, ENCFF461KXI, ENCFF547MET, ENCFF578SUN 133396 ENCODE Processing Pipeline 7b550392e522d44dfc19a4f4f2cd3b34 https://www.encodeproject.org/files/ENCFF439DUG/@@download/ENCFF439DUG.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001JXY bam alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001JYN 458872186 Bing Ren, UCSD 94d0ab3f75ad4ae83d01bb42d66f13cb https://www.encodeproject.org/files/ENCFF001JXY/@@download/ENCFF001JXY.bam mm9 released low read length insufficient read depth ENCFF001JXZ bam alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001JYM 515174451 Bing Ren, UCSD 5fdc00b8a590c94153fe242cf7c478cc https://www.encodeproject.org/files/ENCFF001JXZ/@@download/ENCFF001JXZ.bam mm9 released low read length insufficient read depth ENCFF001JYC bigWig signal ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001JXY, ENCFF001JXZ 75573866 Bing Ren, UCSD 65cd692b0f2bf9d2af4fc732e236f1d8 https://www.encodeproject.org/files/ENCFF001JYC/@@download/ENCFF001JYC.bigWig mm9 released low read length insufficient read depth ENCFF001JYM fastq reads ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 563637156 Bing Ren, UCSD e390cd1a9fa48c9109e3ff57000d8aff https://www.encodeproject.org/files/ENCFF001JYM/@@download/ENCFF001JYM.fastq.gz Illumina Genome Analyzer II released low read length insufficient read depth ENCFF001JYN fastq reads ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 736482153 Bing Ren, UCSD b57193d42b9dd795a7097b55a32565e2 https://www.encodeproject.org/files/ENCFF001JYN/@@download/ENCFF001JYN.fastq.gz Illumina Genome Analyzer II released low read length insufficient read depth ENCFF171SGL bam unfiltered alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001JYN, ENCFF806TVZ 826189598 J. Michael Cherry, Stanford c5887e82e805fcb3075046ea3f739f2c https://www.encodeproject.org/files/ENCFF171SGL/@@download/ENCFF171SGL.bam mm10-minimal archived low read length insufficient read depth ENCFF817AHU bam unfiltered alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001JYM, ENCFF806TVZ 630506388 J. Michael Cherry, Stanford 9c0e7ec20d0c727c21111a071d8ac33f https://www.encodeproject.org/files/ENCFF817AHU/@@download/ENCFF817AHU.bam mm10-minimal archived low read length insufficient read depth ENCFF543ZVH bam alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001JYM, ENCFF018NEO 371438728 ENCODE Processing Pipeline 827fbe1039993ccaae6ea193447bf102 https://www.encodeproject.org/files/ENCFF543ZVH/@@download/ENCFF543ZVH.bam mm10 released low read length insufficient read depth ENCFF249NVZ bam alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001JYN, ENCFF018NEO 384418375 ENCODE Processing Pipeline 5b1933b11fdc09906369bcd2b4f1de58 https://www.encodeproject.org/files/ENCFF249NVZ/@@download/ENCFF249NVZ.bam mm10 released low read length insufficient read depth ENCFF512BNL bam unfiltered alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001JYN, ENCFF018NEO 827507631 ENCODE Processing Pipeline a247e5eb3d6a7dfe23296b1203b19740 https://www.encodeproject.org/files/ENCFF512BNL/@@download/ENCFF512BNL.bam mm10 released low read length insufficient read depth ENCFF556BLO bam unfiltered alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001JYM, ENCFF018NEO 630711034 ENCODE Processing Pipeline 60153265e184a27c01444e8cc2aa5c50 https://www.encodeproject.org/files/ENCFF556BLO/@@download/ENCFF556BLO.bam mm10 released low read length insufficient read depth ENCFF001KRW bam alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001KSH 511309230 Bing Ren, UCSD b3a5d9ca69746d55840bedb48fc9382b https://www.encodeproject.org/files/ENCFF001KRW/@@download/ENCFF001KRW.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KRX bam alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KSJ 374471331 Bing Ren, UCSD 4f1ab0850963c6cd7aea129da8f53472 https://www.encodeproject.org/files/ENCFF001KRX/@@download/ENCFF001KRX.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KSA bigWig signal ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001KRW, ENCFF001KRX 85578731 Bing Ren, UCSD 9fbe35f3a5c40b943e9c622b0806fb71 https://www.encodeproject.org/files/ENCFF001KSA/@@download/ENCFF001KSA.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KSH fastq reads ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 754054467 Bing Ren, UCSD 63548843d2f02d9c2c5a6fb0fb06e300 https://www.encodeproject.org/files/ENCFF001KSH/@@download/ENCFF001KSH.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth ENCFF001KSJ fastq reads ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 549736393 Bing Ren, UCSD a9d5add8fe1cab12a37ca58547994005 https://www.encodeproject.org/files/ENCFF001KSJ/@@download/ENCFF001KSJ.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth ENCFF744JMO bam unfiltered alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001KSH, ENCFF806TVZ 884358264 J. Michael Cherry, Stanford d07dbd7eb02b277826c37381efe07aaf https://www.encodeproject.org/files/ENCFF744JMO/@@download/ENCFF744JMO.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF290AFZ bam unfiltered alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KSJ, ENCFF806TVZ 630552276 J. Michael Cherry, Stanford 0607cf032710fd473398a4809985271d https://www.encodeproject.org/files/ENCFF290AFZ/@@download/ENCFF290AFZ.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF371CWA bam alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001KSH, ENCFF018NEO 594300085 ENCODE Processing Pipeline 583614381f6cc9a276726d7cecc31f95 https://www.encodeproject.org/files/ENCFF371CWA/@@download/ENCFF371CWA.bam mm10 released low read length, low read depth insufficient read depth ENCFF543ZOX bam alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001KSJ, ENCFF018NEO 400552795 ENCODE Processing Pipeline d892cf60367968d6961efe9a0dc99d46 https://www.encodeproject.org/files/ENCFF543ZOX/@@download/ENCFF543ZOX.bam mm10 released low read length, low read depth insufficient read depth ENCFF625HMC bam unfiltered alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001KSH, ENCFF018NEO 885515770 ENCODE Processing Pipeline 780924101ce3c16834ce7ef21088b04d https://www.encodeproject.org/files/ENCFF625HMC/@@download/ENCFF625HMC.bam mm10 released low read length, low read depth insufficient read depth ENCFF070EMU bam unfiltered alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001KSJ, ENCFF018NEO 631355339 ENCODE Processing Pipeline 72ec285c7cb10a479c0bd0ade74713ec https://www.encodeproject.org/files/ENCFF070EMU/@@download/ENCFF070EMU.bam mm10 released low read length, low read depth insufficient read depth ENCFF174GDI fastq reads ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1921546022 Bing Ren, UCSD 60b2aaf59b16d9417f7dea4cece8532b SRA:SRR3653067 https://www.encodeproject.org/files/ENCFF174GDI/@@download/ENCFF174GDI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXS/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF654QVB fastq reads ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 2 36 single-ended 550047004 Bing Ren, UCSD 12f6c314c32b2254bb2b9e1ee64c7540 SRA:SRR3653068 https://www.encodeproject.org/files/ENCFF654QVB/@@download/ENCFF654QVB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXU/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF304ZTQ fastq reads ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1544192449 Bing Ren, UCSD 9e68fae4d93b6ab34bcd8b442e5e5b17 SRA:SRR3653069 https://www.encodeproject.org/files/ENCFF304ZTQ/@@download/ENCFF304ZTQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXU/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF087VIH bam alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF304ZTQ, ENCFF654QVB, ENCFF806TVZ 925649977 ENCODE Processing Pipeline ca20371033dec46fe79855a32f64cf7a https://www.encodeproject.org/files/ENCFF087VIH/@@download/ENCFF087VIH.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF835DEM bam alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF174GDI, ENCFF806TVZ 1015998116 ENCODE Processing Pipeline 89fcfeeefacde1f0597509741c56d2b6 https://www.encodeproject.org/files/ENCFF835DEM/@@download/ENCFF835DEM.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF286PSI bed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF087VIH, ENCFF532IQU, ENCFF540VMM 1038014 ENCODE Processing Pipeline a175cca609f1786885c7a1224a0ba4e2 https://www.encodeproject.org/files/ENCFF286PSI/@@download/ENCFF286PSI.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF046BLS bed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF835DEM 875105 ENCODE Processing Pipeline f168ee23dba4dc1525598b262163ed62 https://www.encodeproject.org/files/ENCFF046BLS/@@download/ENCFF046BLS.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF608FGV bigWig signal p-value ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF835DEM 638574657 ENCODE Processing Pipeline 94249e15186ba55618c5d783fa7394ac https://www.encodeproject.org/files/ENCFF608FGV/@@download/ENCFF608FGV.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF966TAY bed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF087VIH, ENCFF532IQU, ENCFF540VMM, ENCFF835DEM 951645 ENCODE Processing Pipeline 3bea9931f0c0b457ac42a3ed7608ff4b https://www.encodeproject.org/files/ENCFF966TAY/@@download/ENCFF966TAY.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF713GNN bigBed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF046BLS 2039369 ENCODE Processing Pipeline 1862b47f403a58de89712853c6acfed1 https://www.encodeproject.org/files/ENCFF713GNN/@@download/ENCFF713GNN.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF175BGZ bigBed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF286PSI 2308130 ENCODE Processing Pipeline 6a7400e14a3ac76662e9a953690b1715 https://www.encodeproject.org/files/ENCFF175BGZ/@@download/ENCFF175BGZ.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF025GBU bigBed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF966TAY 2110266 ENCODE Processing Pipeline c6cc8d382578342ff6a8d83a015222fb https://www.encodeproject.org/files/ENCFF025GBU/@@download/ENCFF025GBU.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF030YAH bigWig signal p-value ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF087VIH, ENCFF532IQU, ENCFF540VMM 497764367 ENCODE Processing Pipeline 5cf3622db8cdb29806f3661469f9c6b6 https://www.encodeproject.org/files/ENCFF030YAH/@@download/ENCFF030YAH.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF048FGS bigWig signal p-value ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF087VIH, ENCFF532IQU, ENCFF540VMM, ENCFF835DEM 867476516 ENCODE Processing Pipeline c98414b5f2507e7fc428e3f69496d74a https://www.encodeproject.org/files/ENCFF048FGS/@@download/ENCFF048FGS.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF969BSS 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H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF087VIH, ENCFF532IQU, ENCFF540VMM, ENCFF835DEM 867347618 ENCODE Processing Pipeline ab146f86b576f734f5b70895f6d8c8af https://www.encodeproject.org/files/ENCFF332QUF/@@download/ENCFF332QUF.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF428SIJ bigBed narrowPeak replicated peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF081SZY 1161545 ENCODE Processing Pipeline d83bdc68614fd86cf1beb5d83597bbde https://www.encodeproject.org/files/ENCFF428SIJ/@@download/ENCFF428SIJ.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF081SZY bed narrowPeak replicated peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF046BLS, ENCFF286PSI, ENCFF966TAY 559169 ENCODE Processing Pipeline e8078dd639ad37b8dfe2dc71cd64a5b9 https://www.encodeproject.org/files/ENCFF081SZY/@@download/ENCFF081SZY.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF768AQC bam unfiltered alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF174GDI 2428620530 ENCODE Processing Pipeline 59d5f9870c2c6f0da1b756e398a6a2ae https://www.encodeproject.org/files/ENCFF768AQC/@@download/ENCFF768AQC.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF206PWE bam unfiltered alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF304ZTQ, ENCFF654QVB 2660190208 ENCODE Processing Pipeline 557f02200588a509b070580493b48838 https://www.encodeproject.org/files/ENCFF206PWE/@@download/ENCFF206PWE.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF622PSB bam alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF304ZTQ, ENCFF654QVB 925114633 ENCODE Processing Pipeline 7e66ebbddf1381e39e8dad1bf4aacfe7 https://www.encodeproject.org/files/ENCFF622PSB/@@download/ENCFF622PSB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF363APO bam alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF174GDI 1015333772 ENCODE Processing Pipeline dca11e088122ab09abcb446d482d4ead https://www.encodeproject.org/files/ENCFF363APO/@@download/ENCFF363APO.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF111FFG bed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF363APO, ENCFF394IRO, ENCFF742VJP 891421 ENCODE Processing Pipeline affd3d8fee98ca1f5c5d52877b9e10ee https://www.encodeproject.org/files/ENCFF111FFG/@@download/ENCFF111FFG.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF628CKY bed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF363APO, ENCFF394IRO, ENCFF622PSB, ENCFF742VJP 920427 ENCODE Processing Pipeline 5fcba6f17669ef4797dfffb25d0de7b2 https://www.encodeproject.org/files/ENCFF628CKY/@@download/ENCFF628CKY.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF187MEC bed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF394IRO, ENCFF622PSB, ENCFF742VJP 1058869 ENCODE Processing Pipeline 2a0fa6970ded46eac7ddda68413680f1 https://www.encodeproject.org/files/ENCFF187MEC/@@download/ENCFF187MEC.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF434MEO bigBed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF187MEC 2340992 ENCODE Processing Pipeline 2ba4414562d76a3c720f72a1ef831f43 https://www.encodeproject.org/files/ENCFF434MEO/@@download/ENCFF434MEO.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF501VHU bigBed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF111FFG 2042715 ENCODE Processing Pipeline b9313ffdb825ecd3a9b255370142acc1 https://www.encodeproject.org/files/ENCFF501VHU/@@download/ENCFF501VHU.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF071ZWG bigBed narrowPeak peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF628CKY 2071935 ENCODE Processing Pipeline cbde48418e9e03bf09934d0cc369a9fb https://www.encodeproject.org/files/ENCFF071ZWG/@@download/ENCFF071ZWG.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF661FMG bigWig signal p-value ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF363APO, ENCFF394IRO, ENCFF742VJP 525878602 ENCODE Processing Pipeline 9931ab40f23c0f6c33dd20c6c40c6521 https://www.encodeproject.org/files/ENCFF661FMG/@@download/ENCFF661FMG.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF484FHV bigWig signal p-value ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF394IRO, ENCFF622PSB, ENCFF742VJP 592122559 ENCODE Processing Pipeline ec75a6f5b153c251a5b277ab634dc046 https://www.encodeproject.org/files/ENCFF484FHV/@@download/ENCFF484FHV.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF027PTY bigWig signal p-value ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF363APO, ENCFF394IRO, ENCFF622PSB, ENCFF742VJP 871073057 ENCODE Processing Pipeline e4ae2b90b6e558933012f33ec6dd1523 https://www.encodeproject.org/files/ENCFF027PTY/@@download/ENCFF027PTY.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF182WXQ bigWig fold change over control ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF363APO, ENCFF394IRO, ENCFF742VJP 596855065 ENCODE Processing Pipeline 35f0b988eb5782361b308888e2148f6e https://www.encodeproject.org/files/ENCFF182WXQ/@@download/ENCFF182WXQ.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF883DRX bigWig fold change over control ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF394IRO, ENCFF622PSB, ENCFF742VJP 538282746 ENCODE Processing Pipeline 549e06da38129bbb7bf70a2fe213178c https://www.encodeproject.org/files/ENCFF883DRX/@@download/ENCFF883DRX.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF767LND bigWig fold change over control ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF363APO, ENCFF394IRO, ENCFF622PSB, ENCFF742VJP 869593836 ENCODE Processing Pipeline 0221be05b187e0802de501ac66d786d6 https://www.encodeproject.org/files/ENCFF767LND/@@download/ENCFF767LND.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF712UKV bed narrowPeak replicated peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF111FFG, ENCFF187MEC, ENCFF628CKY 573958 ENCODE Processing Pipeline eabee916cd665c51d95dfb40a4bc3e56 https://www.encodeproject.org/files/ENCFF712UKV/@@download/ENCFF712UKV.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF261UBH bigBed narrowPeak replicated peaks ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF712UKV 1195386 ENCODE Processing Pipeline d7d6fec4935eaf4b97d8d4526364b117 https://www.encodeproject.org/files/ENCFF261UBH/@@download/ENCFF261UBH.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF085DOW fastq reads ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1791235078 Bing Ren, UCSD 68b6938943b648b21192aa06acfdc774 SRA:SRR3652567 https://www.encodeproject.org/files/ENCFF085DOW/@@download/ENCFF085DOW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYB/ released low read length, control low read depth control insufficient read depth ENCFF479WIO fastq reads ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1664490107 Bing Ren, UCSD e37b7b80d38b92e349a0fd1986903718 SRA:SRR3652566 https://www.encodeproject.org/files/ENCFF479WIO/@@download/ENCFF479WIO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYC/ released low read length, control low read depth control insufficient read depth ENCFF009BUB bam alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF479WIO, ENCFF806TVZ 994403011 ENCODE Processing Pipeline 0c22de4a0a83f916a41940971b4d4bfa https://www.encodeproject.org/files/ENCFF009BUB/@@download/ENCFF009BUB.bam mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF783KCZ bam alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF085DOW, ENCFF806TVZ 1102069684 ENCODE Processing Pipeline ba9a98ce91ac6ab60e76c6ac5f3d5c36 https://www.encodeproject.org/files/ENCFF783KCZ/@@download/ENCFF783KCZ.bam mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF573ZPD bigBed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF963ALM 1011907 ENCODE Processing Pipeline 9d3cf44410a904021aacdd9fb9d930c3 https://www.encodeproject.org/files/ENCFF573ZPD/@@download/ENCFF573ZPD.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF073APZ bigBed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF933GXS 1261617 ENCODE Processing Pipeline 5120951da20a25e626c052083afea2bc https://www.encodeproject.org/files/ENCFF073APZ/@@download/ENCFF073APZ.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF773DKK bigBed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF611CLT 1483317 ENCODE Processing Pipeline 94344a62379e62f1a9bd125df4759f47 https://www.encodeproject.org/files/ENCFF773DKK/@@download/ENCFF773DKK.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF611CLT bed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF009BUB, ENCFF141POR, ENCFF783KCZ, ENCFF783YRC 600364 ENCODE Processing Pipeline a69f129b65dcb36511c3ef7dc1855919 https://www.encodeproject.org/files/ENCFF611CLT/@@download/ENCFF611CLT.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF963ALM bed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF141POR, ENCFF783KCZ, ENCFF783YRC 491022 ENCODE Processing Pipeline 6e73decd6a101f2922eda9030ec75e56 https://www.encodeproject.org/files/ENCFF963ALM/@@download/ENCFF963ALM.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF007YAH bigWig signal p-value ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF141POR, ENCFF783KCZ, ENCFF783YRC 672848179 ENCODE Processing Pipeline cb4c63e440bc3cdeefc57481c53c7c6d https://www.encodeproject.org/files/ENCFF007YAH/@@download/ENCFF007YAH.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF933GXS bed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF009BUB, ENCFF141POR 658247 ENCODE Processing Pipeline 9e53823948bfcedec165886908836b2f https://www.encodeproject.org/files/ENCFF933GXS/@@download/ENCFF933GXS.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF088IKV bigWig signal p-value ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF009BUB, ENCFF141POR 436572288 ENCODE Processing Pipeline 76c689f3ec687a7e276514caf218d052 https://www.encodeproject.org/files/ENCFF088IKV/@@download/ENCFF088IKV.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF299ZIS bigWig signal p-value ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF009BUB, ENCFF141POR, ENCFF783KCZ, ENCFF783YRC 941135117 ENCODE Processing Pipeline c68677244a8d20cdbb7941c14ddcf189 https://www.encodeproject.org/files/ENCFF299ZIS/@@download/ENCFF299ZIS.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF085PHF bigWig fold change over control ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF141POR, ENCFF783KCZ, ENCFF783YRC 658461218 ENCODE Processing Pipeline 72d2293e91533edfce75a7d18c9fcc6f https://www.encodeproject.org/files/ENCFF085PHF/@@download/ENCFF085PHF.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF541EDF bigWig fold change over control ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF009BUB, ENCFF141POR, ENCFF783KCZ, ENCFF783YRC 942924372 ENCODE Processing Pipeline dbb417312a61609ff7a8bbeff2cdb29e https://www.encodeproject.org/files/ENCFF541EDF/@@download/ENCFF541EDF.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF400JJF bed narrowPeak replicated peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF611CLT, ENCFF933GXS, ENCFF963ALM 269702 ENCODE Processing Pipeline 15646a9488278906642be2cb678817f9 https://www.encodeproject.org/files/ENCFF400JJF/@@download/ENCFF400JJF.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF476LIK bigWig fold change over control ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF009BUB, ENCFF141POR 454550287 ENCODE Processing Pipeline b35db90966b80d7d22365844ac09fda7 https://www.encodeproject.org/files/ENCFF476LIK/@@download/ENCFF476LIK.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF281HUP bigBed narrowPeak replicated peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF400JJF 680190 ENCODE Processing Pipeline b1102a4012e62e661feceeaccb93c838 https://www.encodeproject.org/files/ENCFF281HUP/@@download/ENCFF281HUP.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF178CZO bam unfiltered alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF479WIO 2183201966 ENCODE Processing Pipeline 674a5d0607ffe11fb0182b6649b4953a https://www.encodeproject.org/files/ENCFF178CZO/@@download/ENCFF178CZO.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF965TKX bam unfiltered alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF085DOW 2355249689 ENCODE Processing Pipeline 2072029dd011629ded856061b2b9c2d3 https://www.encodeproject.org/files/ENCFF965TKX/@@download/ENCFF965TKX.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF668WPD bam alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF479WIO 993916249 ENCODE Processing Pipeline ed390180f698ee59847537be74e196ac https://www.encodeproject.org/files/ENCFF668WPD/@@download/ENCFF668WPD.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF989HCI bam alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF085DOW 1101491051 ENCODE Processing Pipeline 4f3fae85c3bee7057be4268771fc57af https://www.encodeproject.org/files/ENCFF989HCI/@@download/ENCFF989HCI.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF673MDW bed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF989HCI 459343 ENCODE Processing Pipeline 35675ef4eaa1df1a76cc31339baeac8a https://www.encodeproject.org/files/ENCFF673MDW/@@download/ENCFF673MDW.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF551GOU bed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF025IEP, ENCFF668WPD 663468 ENCODE Processing Pipeline 26263658033fc0ca03900bfcc2526bf1 https://www.encodeproject.org/files/ENCFF551GOU/@@download/ENCFF551GOU.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF681HIT bed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF668WPD, ENCFF989HCI 584327 ENCODE Processing Pipeline 576218dfb4405736904c445cf0f35007 https://www.encodeproject.org/files/ENCFF681HIT/@@download/ENCFF681HIT.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF700VOL bigBed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF673MDW 963128 ENCODE Processing Pipeline 60217606e1ce53b12e6b15b79c5180e3 https://www.encodeproject.org/files/ENCFF700VOL/@@download/ENCFF700VOL.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF730LLR bigBed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF551GOU 1268790 ENCODE Processing Pipeline 9dcbba3a52ff4d742e16021665f4ffe0 https://www.encodeproject.org/files/ENCFF730LLR/@@download/ENCFF730LLR.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF296LCO bigBed narrowPeak peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF681HIT 1455131 ENCODE Processing Pipeline fbb4d490bc30077130e19a33d2bb8eff https://www.encodeproject.org/files/ENCFF296LCO/@@download/ENCFF296LCO.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF397ZBO bigWig signal p-value ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF989HCI 662880049 ENCODE Processing Pipeline cf7ef94d2c07185a84baeebc6ab77033 https://www.encodeproject.org/files/ENCFF397ZBO/@@download/ENCFF397ZBO.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF645XLU bigWig signal p-value ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF025IEP, ENCFF668WPD 508230349 ENCODE Processing Pipeline cc5cd98e222a32967debc7d57b0144ad https://www.encodeproject.org/files/ENCFF645XLU/@@download/ENCFF645XLU.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF279ZPH bigWig signal p-value ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF668WPD, ENCFF989HCI 935627077 ENCODE Processing Pipeline 82ab4892e25948017f90624f8368c33b https://www.encodeproject.org/files/ENCFF279ZPH/@@download/ENCFF279ZPH.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF301UDJ bigWig fold change over control ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF989HCI 636923220 ENCODE Processing Pipeline ed6c8723d3761c1dce04544a91b829cb https://www.encodeproject.org/files/ENCFF301UDJ/@@download/ENCFF301UDJ.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF201IME bigWig fold change over control ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF025IEP, ENCFF668WPD 455082060 ENCODE Processing Pipeline 72634f2119252dac4772ccc8dba7efe9 https://www.encodeproject.org/files/ENCFF201IME/@@download/ENCFF201IME.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF824UJK bigWig fold change over control ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF668WPD, ENCFF989HCI 932956827 ENCODE Processing Pipeline 28d9e0d29ac948e8036a1011ba64f2ca https://www.encodeproject.org/files/ENCFF824UJK/@@download/ENCFF824UJK.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF544RGQ bed narrowPeak replicated peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF551GOU, ENCFF673MDW, ENCFF681HIT 261785 ENCODE Processing Pipeline 2f16141398b92f5aceb96d30c51073a3 https://www.encodeproject.org/files/ENCFF544RGQ/@@download/ENCFF544RGQ.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF714MDC bigBed narrowPeak replicated peaks ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF544RGQ 668067 ENCODE Processing Pipeline 6a158a8c7be19a90ab82332ba5976d22 https://www.encodeproject.org/files/ENCFF714MDC/@@download/ENCFF714MDC.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF002EUJ fastq reads ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1023212208 Bing Ren, UCSD 8cf274232e3109b1c5484d1db25ceefa SRA:SRR3652962 https://www.encodeproject.org/files/ENCFF002EUJ/@@download/ENCFF002EUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXT/ released low read length, low read depth ENCFF002EUL fastq reads ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1152039420 Bing Ren, UCSD 2dfaafba4c7631f89ad8522e1372bda2 SRA:SRR3652961 https://www.encodeproject.org/files/ENCFF002EUL/@@download/ENCFF002EUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXR/ released low read length, low read depth ENCFF180PVS bam alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUL, ENCFF806TVZ 1001721967 ENCODE Processing Pipeline 421caa0b70301c841f87528cc4074921 https://www.encodeproject.org/files/ENCFF180PVS/@@download/ENCFF180PVS.bam mm10-minimal archived low read length, low read depth ENCFF058IDO bam alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUJ, ENCFF806TVZ 890596640 ENCODE Processing Pipeline ba75af4ef12fc986c141dcbbc8f2e13c https://www.encodeproject.org/files/ENCFF058IDO/@@download/ENCFF058IDO.bam mm10-minimal archived low read length, low read depth ENCFF136VHX bed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF058IDO, ENCFF461NAJ 1031832 ENCODE Processing Pipeline b07473728d4fc04470ec581eb1988b4c https://www.encodeproject.org/files/ENCFF136VHX/@@download/ENCFF136VHX.bed.gz mm10-minimal archived low read length, low read depth ENCFF858GKX bed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF058IDO, ENCFF180PVS, ENCFF461NAJ, ENCFF720BSQ 1520722 ENCODE Processing Pipeline 2902b755637743c54b961fc5c6a15ac6 https://www.encodeproject.org/files/ENCFF858GKX/@@download/ENCFF858GKX.bed.gz mm10-minimal archived low read length, low read depth ENCFF606SIQ bigBed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF136VHX 3114962 ENCODE Processing Pipeline 8cb90e8d2bfda451f4500c7f70c87d93 https://www.encodeproject.org/files/ENCFF606SIQ/@@download/ENCFF606SIQ.bigBed mm10-minimal archived low read length, low read depth ENCFF022VEE bed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF180PVS, ENCFF461NAJ, ENCFF720BSQ 1236859 ENCODE Processing Pipeline 211268806d9ae77b069b271641712337 https://www.encodeproject.org/files/ENCFF022VEE/@@download/ENCFF022VEE.bed.gz mm10-minimal archived low read length, low read depth ENCFF424LPW bigBed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF858GKX 4354776 ENCODE Processing Pipeline 3132541fe894c784153a1f2f3cf165e3 https://www.encodeproject.org/files/ENCFF424LPW/@@download/ENCFF424LPW.bigBed mm10-minimal archived low read length, low read depth ENCFF232TJE bigBed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF022VEE 3661458 ENCODE Processing Pipeline 365cb5afb9b289e78aced3375e32a391 https://www.encodeproject.org/files/ENCFF232TJE/@@download/ENCFF232TJE.bigBed mm10-minimal archived low read length, low read depth ENCFF120USI bigWig signal p-value ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF180PVS, ENCFF461NAJ, ENCFF720BSQ 619890580 ENCODE Processing Pipeline fee86216418c9fb3c1f9c40a148ff2a2 https://www.encodeproject.org/files/ENCFF120USI/@@download/ENCFF120USI.bigWig mm10-minimal archived low read length, low read depth ENCFF375DSJ bigWig signal p-value ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF058IDO, ENCFF180PVS, ENCFF461NAJ, ENCFF720BSQ 788271458 ENCODE Processing Pipeline 5b618c573c14a3ad7229c597da45084c https://www.encodeproject.org/files/ENCFF375DSJ/@@download/ENCFF375DSJ.bigWig mm10-minimal archived low read length, low read depth ENCFF625OBF bigWig signal p-value ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF058IDO, ENCFF461NAJ 348038029 ENCODE Processing Pipeline a1811c0d189c3d7bbf02fee28211023e https://www.encodeproject.org/files/ENCFF625OBF/@@download/ENCFF625OBF.bigWig mm10-minimal archived low read length, low read depth ENCFF750JNH bigWig fold change over control ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF180PVS, ENCFF461NAJ, ENCFF720BSQ 541248683 ENCODE Processing Pipeline ed49f0e64e5c8bf1bfa46a0b76db498d https://www.encodeproject.org/files/ENCFF750JNH/@@download/ENCFF750JNH.bigWig mm10-minimal archived low read length, low read depth ENCFF166RPM bigWig fold change over control ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF058IDO, ENCFF461NAJ 382093592 ENCODE Processing Pipeline 1dde582f7bd7f26141479db82f0fd39a https://www.encodeproject.org/files/ENCFF166RPM/@@download/ENCFF166RPM.bigWig mm10-minimal archived low read length, low read depth ENCFF646VNL bigBed narrowPeak replicated peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF206CJX 2353257 ENCODE Processing Pipeline 9e27b5848dfd8805ccb9b5fb3141422b https://www.encodeproject.org/files/ENCFF646VNL/@@download/ENCFF646VNL.bigBed mm10-minimal archived low read length, low read depth ENCFF206CJX bed narrowPeak replicated peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF022VEE, ENCFF136VHX, ENCFF858GKX 1068664 ENCODE Processing Pipeline cbeeeaaa35084e36ba2f4aa02028e93b https://www.encodeproject.org/files/ENCFF206CJX/@@download/ENCFF206CJX.bed.gz mm10-minimal archived low read length, low read depth ENCFF150LLC bigWig fold change over control ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF058IDO, ENCFF180PVS, ENCFF461NAJ, ENCFF720BSQ 781634586 ENCODE Processing Pipeline 9cd161bab5b127d5a0d44c4adb54f93c https://www.encodeproject.org/files/ENCFF150LLC/@@download/ENCFF150LLC.bigWig mm10-minimal archived low read length, low read depth ENCFF157UVV bam unfiltered alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUL, ENCFF018NEO 1458066269 ENCODE Processing Pipeline 5c6e8ec035d965444a874559e52b8710 https://www.encodeproject.org/files/ENCFF157UVV/@@download/ENCFF157UVV.bam mm10 released low read length, low read depth ENCFF457YEL bam unfiltered alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUJ, ENCFF018NEO 1301882578 ENCODE Processing Pipeline 40035fe44224740a62c5cc28663adbb4 https://www.encodeproject.org/files/ENCFF457YEL/@@download/ENCFF457YEL.bam mm10 released low read length, low read depth ENCFF692PLL bam alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUJ, ENCFF018NEO 890408608 ENCODE Processing Pipeline 28b27a4bf03e67905d56c693b25aaf1f https://www.encodeproject.org/files/ENCFF692PLL/@@download/ENCFF692PLL.bam mm10 released low read length, low read depth ENCFF430JSU bam alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUL, ENCFF018NEO 1001522018 ENCODE Processing Pipeline f65f4a8bd484144ff462f8a09dc49fa1 https://www.encodeproject.org/files/ENCFF430JSU/@@download/ENCFF430JSU.bam mm10 released low read length, low read depth ENCFF998RCA bed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF430JSU, ENCFF568KLX, ENCFF631VBQ 1235407 ENCODE Processing Pipeline 552bbe10bcecb779aa9f9a7a1d644297 https://www.encodeproject.org/files/ENCFF998RCA/@@download/ENCFF998RCA.bed.gz mm10 released low read length, low read depth ENCFF451HUA bed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF692PLL 1031306 ENCODE Processing Pipeline 7797c3f31fde556e76c53c6427bd0e6a https://www.encodeproject.org/files/ENCFF451HUA/@@download/ENCFF451HUA.bed.gz mm10 released low read length, low read depth ENCFF063ANR bed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF430JSU, ENCFF568KLX, ENCFF631VBQ, ENCFF692PLL 1519293 ENCODE Processing Pipeline 2aac1ff2b7f2a3b13b4db5c68bef60d7 https://www.encodeproject.org/files/ENCFF063ANR/@@download/ENCFF063ANR.bed.gz mm10 released low read length, low read depth ENCFF440UUV bigBed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF998RCA 3656345 ENCODE Processing Pipeline c9e2df1a90c936fe15485c82306fd933 https://www.encodeproject.org/files/ENCFF440UUV/@@download/ENCFF440UUV.bigBed mm10 released low read length, low read depth ENCFF364VMV bigBed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF451HUA 3111443 ENCODE Processing Pipeline ecd7e6e8fde40b84854c87355570dec8 https://www.encodeproject.org/files/ENCFF364VMV/@@download/ENCFF364VMV.bigBed mm10 released low read length, low read depth ENCFF448CPK bigBed narrowPeak peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF063ANR 4349325 ENCODE Processing Pipeline 786d0df07ef2cbbde55a4b31c8c5e534 https://www.encodeproject.org/files/ENCFF448CPK/@@download/ENCFF448CPK.bigBed mm10 released low read length, low read depth ENCFF401PWT bigWig signal p-value ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF430JSU, ENCFF568KLX, ENCFF631VBQ 582955240 ENCODE Processing Pipeline af9e7cd6ae603be560cd643b5552f32e https://www.encodeproject.org/files/ENCFF401PWT/@@download/ENCFF401PWT.bigWig mm10 released low read length, low read depth ENCFF370XNS bigWig signal p-value ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF692PLL 404584232 ENCODE Processing Pipeline 9d6069a61586cbba550374e729851fcc https://www.encodeproject.org/files/ENCFF370XNS/@@download/ENCFF370XNS.bigWig mm10 released low read length, low read depth ENCFF464CMO bigWig signal p-value ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF430JSU, ENCFF568KLX, ENCFF631VBQ, ENCFF692PLL 640139770 ENCODE Processing Pipeline a6dc57ba2f5f465a88ea995fe71e422d https://www.encodeproject.org/files/ENCFF464CMO/@@download/ENCFF464CMO.bigWig mm10 released low read length, low read depth ENCFF133MTJ bigWig fold change over control ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF430JSU, ENCFF568KLX, ENCFF631VBQ 540514501 ENCODE Processing Pipeline bf0270705acf22fcf6bf9290aaab5fe4 https://www.encodeproject.org/files/ENCFF133MTJ/@@download/ENCFF133MTJ.bigWig mm10 released low read length, low read depth ENCFF999KIL bigWig fold change over control ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF692PLL 381489908 ENCODE Processing Pipeline cb9f341d61d5b08c9296a9d174afdaa5 https://www.encodeproject.org/files/ENCFF999KIL/@@download/ENCFF999KIL.bigWig mm10 released low read length, low read depth ENCFF463JGO bigWig fold change over control ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF430JSU, ENCFF568KLX, ENCFF631VBQ, ENCFF692PLL 783966108 ENCODE Processing Pipeline 2cc1a9cc3e76a0456e3e3e318871eecf https://www.encodeproject.org/files/ENCFF463JGO/@@download/ENCFF463JGO.bigWig mm10 released low read length, low read depth ENCFF584IJO bed narrowPeak replicated peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF063ANR, ENCFF451HUA, ENCFF998RCA 1069830 ENCODE Processing Pipeline e79675816b15770df8466c85136eb2e0 https://www.encodeproject.org/files/ENCFF584IJO/@@download/ENCFF584IJO.bed.gz mm10 released low read length, low read depth ENCFF128ZJX bigBed narrowPeak replicated peaks ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF584IJO 2355648 ENCODE Processing Pipeline 751eb713479bd46b8627d500599de43f https://www.encodeproject.org/files/ENCFF128ZJX/@@download/ENCFF128ZJX.bigBed mm10 released low read length, low read depth ENCFF771ZUD fastq reads ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2383146885 Bing Ren, UCSD a55a7643c4adb5b126e7665f1fd15002 SRA:SRR3652655 https://www.encodeproject.org/files/ENCFF771ZUD/@@download/ENCFF771ZUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released mild to moderate bottlenecking, inconsistent platforms ENCFF510CAN fastq reads ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2236126873 Bing Ren, UCSD d289642009099a8cb564eea0c09d65b4 SRA:SRR3652654 https://www.encodeproject.org/files/ENCFF510CAN/@@download/ENCFF510CAN.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released mild to moderate bottlenecking, inconsistent platforms ENCFF613PQH bam alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF771ZUD, ENCFF806TVZ 1639471540 ENCODE Processing Pipeline d370055b61b99c2bdeea81c3cc3d501a https://www.encodeproject.org/files/ENCFF613PQH/@@download/ENCFF613PQH.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF695HJF bam alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF510CAN, ENCFF806TVZ 1603683976 ENCODE Processing Pipeline 46a0b0fc0eab41d562d65a7b63ac7104 https://www.encodeproject.org/files/ENCFF695HJF/@@download/ENCFF695HJF.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF219ABP bed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF241ENQ, ENCFF695HJF 630950 ENCODE Processing Pipeline 7bb2ff7a2073bb5af10a4c296b15b481 https://www.encodeproject.org/files/ENCFF219ABP/@@download/ENCFF219ABP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF784NMI bigBed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF086ZCH 2172757 ENCODE Processing Pipeline 92ffc3c777cbb227e612b0c668e971eb https://www.encodeproject.org/files/ENCFF784NMI/@@download/ENCFF784NMI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF457YEW bed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF613PQH 654189 ENCODE Processing Pipeline 96551e2db6d6d2e7d19a1c914e447583 https://www.encodeproject.org/files/ENCFF457YEW/@@download/ENCFF457YEW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF543MFH bigBed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF219ABP 2012865 ENCODE Processing Pipeline 6e6b4d0ff911d337dca805569c070a90 https://www.encodeproject.org/files/ENCFF543MFH/@@download/ENCFF543MFH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF086ZCH bed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF613PQH, ENCFF695HJF 732697 ENCODE Processing Pipeline b1ac208ca42abf397c3f993c34912082 https://www.encodeproject.org/files/ENCFF086ZCH/@@download/ENCFF086ZCH.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF167AOJ bigBed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF457YEW 2066550 ENCODE Processing Pipeline 840489508bf423d09268b38b053a2a4e https://www.encodeproject.org/files/ENCFF167AOJ/@@download/ENCFF167AOJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF896UIS bigWig signal p-value ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF241ENQ, ENCFF695HJF 621753783 ENCODE Processing Pipeline 781beb57c5c8571a08e90542db12e977 https://www.encodeproject.org/files/ENCFF896UIS/@@download/ENCFF896UIS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF610NUC bigWig signal p-value ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF613PQH 521127164 ENCODE Processing Pipeline 9786bc2b6b8d24aa9dcba9405bb62add https://www.encodeproject.org/files/ENCFF610NUC/@@download/ENCFF610NUC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF902LHS bigWig signal p-value ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF613PQH, ENCFF695HJF 836515468 ENCODE Processing Pipeline a4583fae695511ea2cb29322a180a171 https://www.encodeproject.org/files/ENCFF902LHS/@@download/ENCFF902LHS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF995OQS bigWig fold change over control ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF241ENQ, ENCFF695HJF 549463242 ENCODE Processing Pipeline 326bd759c7ded5e6efb6f8464b89f400 https://www.encodeproject.org/files/ENCFF995OQS/@@download/ENCFF995OQS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF526FZY bigWig fold change over control ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF613PQH 550715385 ENCODE Processing Pipeline cf1269da91557a631934d0d115ea6033 https://www.encodeproject.org/files/ENCFF526FZY/@@download/ENCFF526FZY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF910WUR bigWig fold change over control ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF613PQH, ENCFF695HJF 1089058295 ENCODE Processing Pipeline 031ef322fc696bf3e2379f8b79d114a7 https://www.encodeproject.org/files/ENCFF910WUR/@@download/ENCFF910WUR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF058EIK bed narrowPeak replicated peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF086ZCH, ENCFF219ABP, ENCFF457YEW 815100 ENCODE Processing Pipeline f06cf471f2471d1b3ba4cd508d776555 https://www.encodeproject.org/files/ENCFF058EIK/@@download/ENCFF058EIK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF068UQB bigBed narrowPeak replicated peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF058EIK 1844934 ENCODE Processing Pipeline 02dd878882641a2d74867b68530a291f https://www.encodeproject.org/files/ENCFF068UQB/@@download/ENCFF068UQB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF334VED bam unfiltered alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF510CAN 2481325069 ENCODE Processing Pipeline e1c64bfd0b64de2ad8b4eb40d0f70469 https://www.encodeproject.org/files/ENCFF334VED/@@download/ENCFF334VED.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF433WFN bam unfiltered alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF771ZUD 2609356743 ENCODE Processing Pipeline 0909e037d44df842b27ddea798043909 https://www.encodeproject.org/files/ENCFF433WFN/@@download/ENCFF433WFN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF978DEK bam alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF510CAN 1603431609 ENCODE Processing Pipeline b7416c55f4ef006fe67f191af616c743 https://www.encodeproject.org/files/ENCFF978DEK/@@download/ENCFF978DEK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF292UUU bam alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF771ZUD 1639221924 ENCODE Processing Pipeline eda08b85b54d3c36715f2cce05d1499a https://www.encodeproject.org/files/ENCFF292UUU/@@download/ENCFF292UUU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF983YOP bed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF978DEK 636548 ENCODE Processing Pipeline 72028212bc038c2c8fbc8843fc2ec677 https://www.encodeproject.org/files/ENCFF983YOP/@@download/ENCFF983YOP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF593FXC bed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF292UUU, ENCFF642FOT 648898 ENCODE Processing Pipeline 638eddbb7b15d4e248636d5c747409b6 https://www.encodeproject.org/files/ENCFF593FXC/@@download/ENCFF593FXC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF663WHP bed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF292UUU, ENCFF487AIV, ENCFF642FOT, ENCFF978DEK 747046 ENCODE Processing Pipeline d9dffc5eac0868ebfc54aa84c391366c https://www.encodeproject.org/files/ENCFF663WHP/@@download/ENCFF663WHP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF808FMV bigBed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF983YOP 1999067 ENCODE Processing Pipeline d1b7753aff0748f3bc110f9ebaa71c73 https://www.encodeproject.org/files/ENCFF808FMV/@@download/ENCFF808FMV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF458YAY bigBed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF593FXC 2050764 ENCODE Processing Pipeline 3a1d673fcc7636c8e4a74e0ab521638d https://www.encodeproject.org/files/ENCFF458YAY/@@download/ENCFF458YAY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF670FUX bigBed narrowPeak peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF663WHP 2164654 ENCODE Processing Pipeline 6369fd1086a4a3445f40f697e20b842b https://www.encodeproject.org/files/ENCFF670FUX/@@download/ENCFF670FUX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF158DIW bigWig signal p-value ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF978DEK 551327506 ENCODE Processing Pipeline b7496045fb678a339a7e09bbcb2d813b https://www.encodeproject.org/files/ENCFF158DIW/@@download/ENCFF158DIW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF308XQB bigWig signal p-value ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF292UUU, ENCFF642FOT 620220671 ENCODE Processing Pipeline b2d5364066442be95f1e56eea07c487d https://www.encodeproject.org/files/ENCFF308XQB/@@download/ENCFF308XQB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF193WMA bigWig signal p-value ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF292UUU, ENCFF487AIV, ENCFF642FOT, ENCFF978DEK 969658818 ENCODE Processing Pipeline d4e0e038b2802ff08a3bb28e45998d28 https://www.encodeproject.org/files/ENCFF193WMA/@@download/ENCFF193WMA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF785PJU bigWig fold change over control ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF487AIV, ENCFF978DEK 633375229 ENCODE Processing Pipeline f7a27f764b8bb30c7d3a451fa6e4dd41 https://www.encodeproject.org/files/ENCFF785PJU/@@download/ENCFF785PJU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF156TQC bigWig fold change over control ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF292UUU, ENCFF642FOT 598715788 ENCODE Processing Pipeline fba9b2b9c2be9ecaa96db64b308dcf6e https://www.encodeproject.org/files/ENCFF156TQC/@@download/ENCFF156TQC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF109NPC bigWig fold change over control ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF292UUU, ENCFF487AIV, ENCFF642FOT, ENCFF978DEK 1142788139 ENCODE Processing Pipeline af0c7487b6f76e39b477201d9e0229d3 https://www.encodeproject.org/files/ENCFF109NPC/@@download/ENCFF109NPC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF070XWK bed narrowPeak replicated peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF593FXC, ENCFF663WHP, ENCFF983YOP 806674 ENCODE Processing Pipeline 22939d4cfd81fa1e60d2bd20b9d61ec9 https://www.encodeproject.org/files/ENCFF070XWK/@@download/ENCFF070XWK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF937PCX bigBed narrowPeak replicated peaks ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF070XWK 1825676 ENCODE Processing Pipeline 22ae5fbb6e089c6e5a8af71da33da45b https://www.encodeproject.org/files/ENCFF937PCX/@@download/ENCFF937PCX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002ARM fastq reads ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 48 single-ended 2909663437 Ross Hardison, PennState a5c5d3acd32093dc8651ba21cb35b59c https://www.encodeproject.org/files/ENCFF002ARM/@@download/ENCFF002ARM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, inconsistent control read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARN bigWig signal ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 4039014560 Ross Hardison, PennState 77b70103fc05c905d9539261b740d326 https://www.encodeproject.org/files/ENCFF002ARN/@@download/ENCFF002ARN.bigWig mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ARO fastq reads ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 48 single-ended 2408184776 Ross Hardison, PennState e2135b882d2d8aa45742183ddfe1a5f4 https://www.encodeproject.org/files/ENCFF002ARO/@@download/ENCFF002ARO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, inconsistent control read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARP bigWig signal ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 3574279463 Ross Hardison, PennState 19ce11a9641060c229757a5a9a707390 https://www.encodeproject.org/files/ENCFF002ARP/@@download/ENCFF002ARP.bigWig mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ARQ bigWig signal ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 5441205819 Ross Hardison, PennState e8a1c26ab010a4948037c4b66a54f03f https://www.encodeproject.org/files/ENCFF002ARQ/@@download/ENCFF002ARQ.bigWig mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ART bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF002ARM 3469272004 Ross Hardison, PennState 37c4099576617340724b953f4a1fa4e7 https://www.encodeproject.org/files/ENCFF002ART/@@download/ENCFF002ART.bam mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARU bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF002ARO 2871827788 Ross Hardison, PennState e120829f0969881d0032f8e47655f650 https://www.encodeproject.org/files/ENCFF002ARU/@@download/ENCFF002ARU.bam mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ARV bigBed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 83395 Ross Hardison, PennState 3687561a0e7485384277278ace1df384 https://www.encodeproject.org/files/ENCFF002ARV/@@download/ENCFF002ARV.bigBed mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ARW bigBed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 229051 Ross Hardison, PennState b26edf099a36662d77d4b9bf7d27df44 https://www.encodeproject.org/files/ENCFF002ARW/@@download/ENCFF002ARW.bigBed mm9 released low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002ARX bigBed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 199060 Ross Hardison, PennState 79335b02f93a83b7a0286c2c91977919 https://www.encodeproject.org/files/ENCFF002ARX/@@download/ENCFF002ARX.bigBed mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002ARY bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 6131974109 Ross Hardison, PennState a80f6b04c8fd753fee769c0efe6ea86d https://www.encodeproject.org/files/ENCFF002ARY/@@download/ENCFF002ARY.bam mm9 released low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF352RFJ bed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 1 ENCFF002ARW 96858 ENCODE Consortium c4c59350823ba74733f46bb7ed64f82f https://www.encodeproject.org/files/ENCFF352RFJ/@@download/ENCFF352RFJ.bed.gz mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF114LXT bed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 1 ENCFF002ARV 21083 ENCODE Consortium aa8294980d2be4b87fdb339c1ff3b109 https://www.encodeproject.org/files/ENCFF114LXT/@@download/ENCFF114LXT.bed.gz mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF830QDG bed broadPeak peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE ENCFF002ARX 82609 ENCODE Consortium 03886d189a281a316b082f7d28c7981c https://www.encodeproject.org/files/ENCFF830QDG/@@download/ENCFF830QDG.bed.gz mm9 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF723AFL bam unfiltered alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 45 ENCFF002ARM, ENCFF018NEO 3540149422 ENCODE Processing Pipeline e883e599c8b96517bc69d404149c1cd2 https://www.encodeproject.org/files/ENCFF723AFL/@@download/ENCFF723AFL.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF450RZA bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 45 ENCFF002ARO, ENCFF018NEO 1988137415 ENCODE Processing Pipeline 43e644c19c622915082510f8b2f8199a https://www.encodeproject.org/files/ENCFF450RZA/@@download/ENCFF450RZA.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF556WXR bam unfiltered alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 45 ENCFF002ARO, ENCFF018NEO 2929705959 ENCODE Processing Pipeline 0eeb90a50464e0ed393e0b7711818a70 https://www.encodeproject.org/files/ENCFF556WXR/@@download/ENCFF556WXR.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF684OCY bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 45 ENCFF002ARM, ENCFF018NEO 2470498456 ENCODE Processing Pipeline c878852ee6e7f82ec432f20e50496c9e https://www.encodeproject.org/files/ENCFF684OCY/@@download/ENCFF684OCY.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF121YLV bigWig fold change over control ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF684OCY 970768473 ENCODE Processing Pipeline f9ac660f89f6157780c13a2241b3acec https://www.encodeproject.org/files/ENCFF121YLV/@@download/ENCFF121YLV.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF469EIJ bigWig fold change over control ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF111OFQ, ENCFF450RZA 713267694 ENCODE Processing Pipeline 949bc9e1b70c2496ae9ef26f1d548d5e https://www.encodeproject.org/files/ENCFF469EIJ/@@download/ENCFF469EIJ.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF238TDR bed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF111OFQ, ENCFF450RZA 5414232 ENCODE Processing Pipeline 866d6a2a15f049f8403dd628edfcc67c https://www.encodeproject.org/files/ENCFF238TDR/@@download/ENCFF238TDR.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF563AVR bigBed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF403ZTD 11267483 ENCODE Processing Pipeline dbc862ad1b018d0bc37e79b809d365d7 https://www.encodeproject.org/files/ENCFF563AVR/@@download/ENCFF563AVR.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF499ROE bed narrowPeak conservative idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF238TDR, ENCFF403ZTD, ENCFF417EAQ, ENCFF547MET 47586 ENCODE Processing Pipeline 1bae2e19ee401f85d8cadb79821d7583 https://www.encodeproject.org/files/ENCFF499ROE/@@download/ENCFF499ROE.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF260LIT bigBed narrowPeak optimal idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF609NWN 173217 ENCODE Processing Pipeline ed14defa21d1c9239f0abf28e2e4a2cb https://www.encodeproject.org/files/ENCFF260LIT/@@download/ENCFF260LIT.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF934VUS bigWig signal p-value ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF684OCY 810553821 ENCODE Processing Pipeline 1b4a21adb5e68a07481aeb834dd22abf https://www.encodeproject.org/files/ENCFF934VUS/@@download/ENCFF934VUS.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF417EAQ bed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF684OCY 5992390 ENCODE Processing Pipeline 8dff11e988fe337f7adad96a2cc0c934 https://www.encodeproject.org/files/ENCFF417EAQ/@@download/ENCFF417EAQ.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF609NWN bed narrowPeak optimal idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF238TDR, ENCFF403ZTD, ENCFF417EAQ, ENCFF547MET 70748 ENCODE Processing Pipeline d16843514657d5af3a155a0cb2fc8739 https://www.encodeproject.org/files/ENCFF609NWN/@@download/ENCFF609NWN.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF403ZTD bed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF111OFQ, ENCFF450RZA, ENCFF666VRA, ENCFF684OCY 6935721 ENCODE Processing Pipeline b628f600a15648d094cb3576b27c1b3e https://www.encodeproject.org/files/ENCFF403ZTD/@@download/ENCFF403ZTD.bed.gz mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF275CFP bigBed narrowPeak conservative idr thresholded peaks ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF499ROE 114158 ENCODE Processing Pipeline 9108a28ef64f628ec60641b76fe10819 https://www.encodeproject.org/files/ENCFF275CFP/@@download/ENCFF275CFP.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF850CTR bigWig signal p-value ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF111OFQ, ENCFF450RZA 664965246 ENCODE Processing Pipeline 60f6cdce40f73613b8f7f0162790f823 https://www.encodeproject.org/files/ENCFF850CTR/@@download/ENCFF850CTR.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF557JSL bigWig signal p-value ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF111OFQ, ENCFF450RZA, ENCFF666VRA, ENCFF684OCY 1148098247 ENCODE Processing Pipeline 5fcf25be48cc2e147ff49a1d9b9c74c5 https://www.encodeproject.org/files/ENCFF557JSL/@@download/ENCFF557JSL.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF619BQO bigWig fold change over control ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1, 2 ENCFF111OFQ, ENCFF450RZA, ENCFF666VRA, ENCFF684OCY 1361173617 ENCODE Processing Pipeline a0552079f16af9e6ccb4af483c7c3b95 https://www.encodeproject.org/files/ENCFF619BQO/@@download/ENCFF619BQO.bigWig mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF975QSD bigBed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 ENCFF417EAQ 11378375 ENCODE Processing Pipeline 18851e7ac263afe8c6d0a982e79f73ad https://www.encodeproject.org/files/ENCFF975QSD/@@download/ENCFF975QSD.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF527XTP bigBed narrowPeak peaks and background as input for IDR ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 ENCFF238TDR 11348997 ENCODE Processing Pipeline f7cd6daf1deb05584f249e536aa38668 https://www.encodeproject.org/files/ENCFF527XTP/@@download/ENCFF527XTP.bigBed mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ESG fastq reads ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1115622037 Bing Ren, UCSD 2c5059dff6865ea012f9291eb05348e4 SRA:SRR3651450 https://www.encodeproject.org/files/ENCFF002ESG/@@download/ENCFF002ESG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXX/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESI fastq reads ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 587027889 Bing Ren, UCSD f89f51d4f816530bde9478e178f6b84f SRA:SRR3651448 https://www.encodeproject.org/files/ENCFF002ESI/@@download/ENCFF002ESI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXZ/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF006WYA fastq reads ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 867867069 Bing Ren, UCSD c0dfd6f78093b4dfcf3b76deb185ec48 SRA:SRR3651451 https://www.encodeproject.org/files/ENCFF006WYA/@@download/ENCFF006WYA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXX/ released mixed read lengths, low read length, inconsistent control read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF397BST fastq reads ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 1585729150 Bing Ren, UCSD 7b5c5b6ea2fa419311cf0918d9e98094 SRA:SRR3651449 https://www.encodeproject.org/files/ENCFF397BST/@@download/ENCFF397BST.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXZ/ released mixed read lengths, low read length, inconsistent control read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF668UKO bam alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESI, ENCFF397BST, ENCFF806TVZ 1900943568 ENCODE Processing Pipeline affab6bf02a17f7ea085a8cca1f1ae12 https://www.encodeproject.org/files/ENCFF668UKO/@@download/ENCFF668UKO.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF735FVC bam alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESG, ENCFF006WYA, ENCFF806TVZ 1668715339 ENCODE Processing Pipeline 8a61f3b0125b904aae04443aab75ea09 https://www.encodeproject.org/files/ENCFF735FVC/@@download/ENCFF735FVC.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF458FIM bigWig signal p-value ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF668UKO 500301970 ENCODE Processing Pipeline bcca688795bd67687148b2237e774571 https://www.encodeproject.org/files/ENCFF458FIM/@@download/ENCFF458FIM.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF316WWS bigBed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF596SDM 1440001 ENCODE Processing Pipeline e4d3bcf58f2679c8d3ca021684084dbb https://www.encodeproject.org/files/ENCFF316WWS/@@download/ENCFF316WWS.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF496IQT bed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF735FVC 520772 ENCODE Processing Pipeline b7b393c7c00b351912b0463d8b54ce25 https://www.encodeproject.org/files/ENCFF496IQT/@@download/ENCFF496IQT.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF532HVV bigBed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF496IQT 1428139 ENCODE Processing Pipeline fa36e1d67856f90795096966fc5ea9c1 https://www.encodeproject.org/files/ENCFF532HVV/@@download/ENCFF532HVV.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF173VUK bed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF668UKO 813976 ENCODE Processing Pipeline 734980dc93b9ee149d82f91113fcb9fb https://www.encodeproject.org/files/ENCFF173VUK/@@download/ENCFF173VUK.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF596SDM bed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF668UKO, ENCFF735FVC 546186 ENCODE Processing Pipeline d03e645241bfee02b05fdea7ba96f5cb https://www.encodeproject.org/files/ENCFF596SDM/@@download/ENCFF596SDM.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF793RNP bigBed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF173VUK 2160749 ENCODE Processing Pipeline 6a6734dd263b3f69114e0c34cd76a2be https://www.encodeproject.org/files/ENCFF793RNP/@@download/ENCFF793RNP.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF728SWN bigWig signal p-value ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF735FVC 508075035 ENCODE Processing Pipeline 27a710df4b60a5761276d09672356360 https://www.encodeproject.org/files/ENCFF728SWN/@@download/ENCFF728SWN.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF903DYM bigWig signal p-value ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF668UKO, ENCFF735FVC 489871098 ENCODE Processing Pipeline 33dcdec539cb90a148eaacfc4347829f https://www.encodeproject.org/files/ENCFF903DYM/@@download/ENCFF903DYM.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF285NRT bigWig fold change over control ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF735FVC 601871003 ENCODE Processing Pipeline d7ff6f9054c50820a287bce7657f580c https://www.encodeproject.org/files/ENCFF285NRT/@@download/ENCFF285NRT.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF796MGG bigWig fold change over control ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF668UKO, ENCFF735FVC 1004540301 ENCODE Processing Pipeline c2ee7962ce877411548c1a718fe7d7f3 https://www.encodeproject.org/files/ENCFF796MGG/@@download/ENCFF796MGG.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF985SWT bigWig fold change over control ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF668UKO 637887363 ENCODE Processing Pipeline 9d04b9641d54a2eab9fb04974b60c7a3 https://www.encodeproject.org/files/ENCFF985SWT/@@download/ENCFF985SWT.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF280TKN bigBed narrowPeak replicated peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF835ICK 1097870 ENCODE Processing Pipeline 77f14cf7a3c16d3415c1514770205d05 https://www.encodeproject.org/files/ENCFF280TKN/@@download/ENCFF280TKN.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF835ICK bed narrowPeak replicated peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF173VUK, ENCFF496IQT, ENCFF596SDM 488348 ENCODE Processing Pipeline 6448a39ae14e5277b1bd0168272b3e59 https://www.encodeproject.org/files/ENCFF835ICK/@@download/ENCFF835ICK.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF224XIP bam unfiltered alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESG, ENCFF006WYA, ENCFF018NEO 2287076357 ENCODE Processing Pipeline fe4261d898ab951ff0dae53f127d9e73 https://www.encodeproject.org/files/ENCFF224XIP/@@download/ENCFF224XIP.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF353UPD bam unfiltered alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESI, ENCFF018NEO, ENCFF397BST 2323094233 ENCODE Processing Pipeline a7000215299699efe2952a7417900160 https://www.encodeproject.org/files/ENCFF353UPD/@@download/ENCFF353UPD.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF410JXV bam alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESI, ENCFF018NEO, ENCFF397BST 1569077803 ENCODE Processing Pipeline bcc32cd66a84cba03bf86e9e85713eb2 https://www.encodeproject.org/files/ENCFF410JXV/@@download/ENCFF410JXV.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF474XKX bam alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESG, ENCFF006WYA, ENCFF018NEO 1465593708 ENCODE Processing Pipeline a0e31a83e68172e51e131b5627e433c8 https://www.encodeproject.org/files/ENCFF474XKX/@@download/ENCFF474XKX.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF291CUN bed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF410JXV, ENCFF426BAZ, ENCFF474XKX 482214 ENCODE Processing Pipeline 897487d3470b535472c2882e96abe8d4 https://www.encodeproject.org/files/ENCFF291CUN/@@download/ENCFF291CUN.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF253PMA bed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF474XKX 540854 ENCODE Processing Pipeline e657df1b9ddf33b0278d930d1f9b3724 https://www.encodeproject.org/files/ENCFF253PMA/@@download/ENCFF253PMA.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF328OXW bigBed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF182GZB 2099248 ENCODE Processing Pipeline 1d0d7e04a451057eb22e20bdd555b0da https://www.encodeproject.org/files/ENCFF328OXW/@@download/ENCFF328OXW.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF182GZB bed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF410JXV, ENCFF426BAZ 792893 ENCODE Processing Pipeline 0ae1197de72b7d6a5ed62cd3e733d0d7 https://www.encodeproject.org/files/ENCFF182GZB/@@download/ENCFF182GZB.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF726UHT bigBed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF291CUN 1280704 ENCODE Processing Pipeline f9aae8f695d1c72826ca54d56f95fcd9 https://www.encodeproject.org/files/ENCFF726UHT/@@download/ENCFF726UHT.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF462GXR bigBed narrowPeak peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF253PMA 1479083 ENCODE Processing Pipeline a2aa4eb640ce65b61b5f2d371290d37b https://www.encodeproject.org/files/ENCFF462GXR/@@download/ENCFF462GXR.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF644KUS bigWig signal p-value ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF474XKX 503254867 ENCODE Processing Pipeline 1ff06eb6463ef2b6055f48089bef2bfd https://www.encodeproject.org/files/ENCFF644KUS/@@download/ENCFF644KUS.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF042PNT bigWig signal p-value ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF410JXV, ENCFF426BAZ 492190858 ENCODE Processing Pipeline 84f564a90ffba07b2b8e476f267ea521 https://www.encodeproject.org/files/ENCFF042PNT/@@download/ENCFF042PNT.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF589ZCE bigWig signal p-value ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF410JXV, ENCFF426BAZ, ENCFF474XKX 487139788 ENCODE Processing Pipeline 196d02c8d96a871f897e5d4d4d087fd8 https://www.encodeproject.org/files/ENCFF589ZCE/@@download/ENCFF589ZCE.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF342YEG bigWig fold change over control ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF474XKX 589218749 ENCODE Processing Pipeline df9320c62973d76e6c8cb3ed05ca6cb4 https://www.encodeproject.org/files/ENCFF342YEG/@@download/ENCFF342YEG.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF261JVA bigWig fold change over control ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF410JXV, ENCFF426BAZ 624841582 ENCODE Processing Pipeline 48c51181e444f4d5171fbe0df16fcc2b https://www.encodeproject.org/files/ENCFF261JVA/@@download/ENCFF261JVA.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF943PON bigWig fold change over control ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF410JXV, ENCFF426BAZ, ENCFF474XKX 963812813 ENCODE Processing Pipeline d756fb846c58d469fdac2eb4f4f719e3 https://www.encodeproject.org/files/ENCFF943PON/@@download/ENCFF943PON.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF651SKE bed narrowPeak replicated peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF182GZB, ENCFF253PMA, ENCFF291CUN 484056 ENCODE Processing Pipeline d0b6794aaf26589d2317e58592be51ee https://www.encodeproject.org/files/ENCFF651SKE/@@download/ENCFF651SKE.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF161GAP bigBed narrowPeak replicated peaks ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF651SKE 1084929 ENCODE Processing Pipeline 972346090278a2a79e06977d4063fde9 https://www.encodeproject.org/files/ENCFF161GAP/@@download/ENCFF161GAP.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001MWF bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MWI 679641979 Ross Hardison, PennState 8f46bfea7c3c4e3d23734c9bee9faf5a https://www.encodeproject.org/files/ENCFF001MWF/@@download/ENCFF001MWF.bam mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF001MWG bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MWO 1726669029 Ross Hardison, PennState ccb83366557c69d9834c4ba84127ab54 https://www.encodeproject.org/files/ENCFF001MWG/@@download/ENCFF001MWG.bam mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF001MWH bigBed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGV 572247 Ross Hardison, PennState 5c6671b88aef74150dbe41b6a15006e0 https://www.encodeproject.org/files/ENCFF001MWH/@@download/ENCFF001MWH.bigBed mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF001MWI fastq reads ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 604129003 Ross Hardison, PennState ce9652a5847c3b0e1e66ee7aa1299d8c https://www.encodeproject.org/files/ENCFF001MWI/@@download/ENCFF001MWI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWB/ released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF001MWJ bigBed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGX 1393896 Ross Hardison, PennState 6ee4a86c61429ab4a521e5fb7ff611f1 https://www.encodeproject.org/files/ENCFF001MWJ/@@download/ENCFF001MWJ.bigBed mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF001MWK bigBed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGW 344188 Ross Hardison, PennState a19948da56f6fdbee316371cf7a6ab04 https://www.encodeproject.org/files/ENCFF001MWK/@@download/ENCFF001MWK.bigBed mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF001MWL bigWig signal ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2512947944 Ross Hardison, PennState 2618fbffa78e80b37721d73104400395 https://www.encodeproject.org/files/ENCFF001MWL/@@download/ENCFF001MWL.bigWig mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length missing derived_from ENCFF001MWN bigWig signal ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2374320363 Ross Hardison, PennState 2fef2654d27f219ef06ba3d6ebfb5fd3 https://www.encodeproject.org/files/ENCFF001MWN/@@download/ENCFF001MWN.bigWig mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length missing derived_from ENCFF001MWO fastq reads ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1379900193 Ross Hardison, PennState 5153ac365af5150ebaaea40493684128 https://www.encodeproject.org/files/ENCFF001MWO/@@download/ENCFF001MWO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length ENCFF001MWP bigWig signal ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 4299513671 Ross Hardison, PennState 7cc7fa5e0b35960e12a3d98bf682cdce https://www.encodeproject.org/files/ENCFF001MWP/@@download/ENCFF001MWP.bigWig mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length missing derived_from ENCFF001YGV bed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 339846 Ross Hardison, PennState b413fbb66114ec48fe04306e83a1f1dd https://www.encodeproject.org/files/ENCFF001YGV/@@download/ENCFF001YGV.bed.gz mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length missing derived_from ENCFF001YGW bed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 122182 Ross Hardison, PennState 592d2188ad853ff2f0eb4b8d083f9c2c https://www.encodeproject.org/files/ENCFF001YGW/@@download/ENCFF001YGW.bed.gz mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length missing derived_from ENCFF001YGX bed broadPeak peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 756324 Ross Hardison, PennState 5d1495ec1ab1793142b60f4d7675f546 https://www.encodeproject.org/files/ENCFF001YGX/@@download/ENCFF001YGX.bed.gz mm9 archived mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length missing derived_from ENCFF085HCW bam unfiltered alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWO, ENCFF018NEO 1666505897 ENCODE Processing Pipeline bec8fddb90d206a7d11cbdccfc2c2ce3 https://www.encodeproject.org/files/ENCFF085HCW/@@download/ENCFF085HCW.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF404ULM bam unfiltered alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWI, ENCFF018NEO 727861723 ENCODE Processing Pipeline afee234371cb9e31240de58a32a01825 https://www.encodeproject.org/files/ENCFF404ULM/@@download/ENCFF404ULM.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF427PQW bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWI, ENCFF018NEO 439870312 ENCODE Processing Pipeline 57083d80ac771a7696ffacdfabe8675f https://www.encodeproject.org/files/ENCFF427PQW/@@download/ENCFF427PQW.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF148BGJ bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWO, ENCFF018NEO 1174575879 ENCODE Processing Pipeline 68acd36887909bd8ae3597772976d9a0 https://www.encodeproject.org/files/ENCFF148BGJ/@@download/ENCFF148BGJ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF072NOF bigWig signal p-value ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 714537231 ENCODE Processing Pipeline 48bffec5f8478cff98ff6e32e45759eb https://www.encodeproject.org/files/ENCFF072NOF/@@download/ENCFF072NOF.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF200KKX bigWig signal p-value ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF148BGJ, ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 986698923 ENCODE Processing Pipeline 30188b45ba20888eae4e3c17ed837227 https://www.encodeproject.org/files/ENCFF200KKX/@@download/ENCFF200KKX.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF279BGB bigWig signal p-value ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF148BGJ, ENCFF339MRB, ENCFF484XJK 861490600 ENCODE Processing Pipeline 45a2d3f262a9bd8f61398c979fbddf27 https://www.encodeproject.org/files/ENCFF279BGB/@@download/ENCFF279BGB.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF927QYV bigWig fold change over control ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 496123974 ENCODE Processing Pipeline 452c4ebedc742a1fe473b2765509bd7a https://www.encodeproject.org/files/ENCFF927QYV/@@download/ENCFF927QYV.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF851NUC bigWig fold change over control ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF148BGJ, ENCFF339MRB, ENCFF484XJK 808424460 ENCODE Processing Pipeline e7379f3faa3810196c124fdef0178333 https://www.encodeproject.org/files/ENCFF851NUC/@@download/ENCFF851NUC.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF398WUM bigWig fold change over control ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF148BGJ, ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 1032429745 ENCODE Processing Pipeline 20ce180de0c0801c319448e23a169daa https://www.encodeproject.org/files/ENCFF398WUM/@@download/ENCFF398WUM.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF702KXH bed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF148BGJ, ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 6694802 ENCODE Processing Pipeline f2fda419c30abb6c05980f9d85b6a0c4 https://www.encodeproject.org/files/ENCFF702KXH/@@download/ENCFF702KXH.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF242JJL bed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF148BGJ, ENCFF339MRB, ENCFF484XJK 6903434 ENCODE Processing Pipeline 14ecb7a953f34da30bee3cd95fc10c1e https://www.encodeproject.org/files/ENCFF242JJL/@@download/ENCFF242JJL.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF375BOL bigBed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF242JJL 13053496 ENCODE Processing Pipeline 686438a2cf0e7c93f556c568b0e288d4 https://www.encodeproject.org/files/ENCFF375BOL/@@download/ENCFF375BOL.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF433SGC bed narrowPeak optimal idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF226EPH, ENCFF242JJL, ENCFF547MET, ENCFF702KXH 99692 ENCODE Processing Pipeline eec6085cda68d73adddb7baf3c50ef15 https://www.encodeproject.org/files/ENCFF433SGC/@@download/ENCFF433SGC.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF226EPH bed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF427PQW, ENCFF484XJK 5725536 ENCODE Processing Pipeline 7df932772bad0a6ec7932a4b4942993f https://www.encodeproject.org/files/ENCFF226EPH/@@download/ENCFF226EPH.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF981SVM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF192DJO 86106 ENCODE Processing Pipeline 9ef8a47e8e3349b1d20a5c2bd1e27a64 https://www.encodeproject.org/files/ENCFF981SVM/@@download/ENCFF981SVM.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF192DJO bed narrowPeak conservative idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF226EPH, ENCFF242JJL, ENCFF547MET, ENCFF702KXH 8586 ENCODE Processing Pipeline 4e56bcfab33f839c7d093f3d6487f18e https://www.encodeproject.org/files/ENCFF192DJO/@@download/ENCFF192DJO.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF634ILC bigBed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF226EPH 11133451 ENCODE Processing Pipeline dda81f5f84c426775a6aece83101b932 https://www.encodeproject.org/files/ENCFF634ILC/@@download/ENCFF634ILC.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF811BWX bigBed narrowPeak peaks and background as input for IDR ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF702KXH 13444678 ENCODE Processing Pipeline 53247c85aa410de39524e1e43d05c82f https://www.encodeproject.org/files/ENCFF811BWX/@@download/ENCFF811BWX.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF224MIN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF433SGC 233440 ENCODE Processing Pipeline 8651f6223cb3a2b818aafc96a3b8ed31 https://www.encodeproject.org/files/ENCFF224MIN/@@download/ENCFF224MIN.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF001KHF bam alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KHQ 1300003688 Bing Ren, UCSD 6bb345934aa6df25959e247fdd650797 https://www.encodeproject.org/files/ENCFF001KHF/@@download/ENCFF001KHF.bam mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KHH bigBed broadPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXG 1459725 Bing Ren, UCSD 2b636c79788d10169ed9fb597bc45cdc https://www.encodeproject.org/files/ENCFF001KHH/@@download/ENCFF001KHH.bigBed mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KHI bam alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KHY 3227410516 Bing Ren, UCSD dd4a853efa262fcee6a87b0e0700f75c https://www.encodeproject.org/files/ENCFF001KHI/@@download/ENCFF001KHI.bam mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KHJ bigWig signal ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KHF, ENCFF001KHI 64879483 Bing Ren, UCSD 8340338f650075cecdd9ba449284be96 https://www.encodeproject.org/files/ENCFF001KHJ/@@download/ENCFF001KHJ.bigWig mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KHQ fastq reads ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1224379950 Bing Ren, UCSD bfb1d83342f6377e5c8e84ba1f3900d7 https://www.encodeproject.org/files/ENCFF001KHQ/@@download/ENCFF001KHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIL/ released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KHY fastq reads ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 3117362052 Bing Ren, UCSD 350ed9295b12a359f2d6d0d14c096f79 https://www.encodeproject.org/files/ENCFF001KHY/@@download/ENCFF001KHY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIM/ released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XXG bed broadPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KHF, ENCFF001KHI 1002466 Bing Ren, UCSD 516a92a97c39e9000e64d0554d19cd76 https://www.encodeproject.org/files/ENCFF001XXG/@@download/ENCFF001XXG.bed.gz mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF179VUD bam unfiltered alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHQ, ENCFF018NEO 1358660547 ENCODE Processing Pipeline ac1de3c5c0a38d0f122a8a6abebcba9a https://www.encodeproject.org/files/ENCFF179VUD/@@download/ENCFF179VUD.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF728RIQ bam alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHQ, ENCFF018NEO 750539285 ENCODE Processing Pipeline d2f361aa8b6e81d42352530a1d713107 https://www.encodeproject.org/files/ENCFF728RIQ/@@download/ENCFF728RIQ.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF451XOD bam unfiltered alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHY, ENCFF018NEO 3424365939 ENCODE Processing Pipeline 27e1a3b108ee95f8064976b139bcaa5f https://www.encodeproject.org/files/ENCFF451XOD/@@download/ENCFF451XOD.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF349DCQ bam alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHY, ENCFF018NEO 2323483595 ENCODE Processing Pipeline 137e6f292a1a406953a1e3198e9a0489 https://www.encodeproject.org/files/ENCFF349DCQ/@@download/ENCFF349DCQ.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF029OJL bed narrowPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF465PJQ, ENCFF728RIQ 2655894 ENCODE Processing Pipeline 6fa60badf0dab0b26045d3e017cf3517 https://www.encodeproject.org/files/ENCFF029OJL/@@download/ENCFF029OJL.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF329GHP bed narrowPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF349DCQ, ENCFF465PJQ, ENCFF728RIQ 1197600 ENCODE Processing Pipeline 780ce0dedae0f8f88f75cddd8fef63c2 https://www.encodeproject.org/files/ENCFF329GHP/@@download/ENCFF329GHP.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF341RWY bed narrowPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF349DCQ, ENCFF465PJQ 1314566 ENCODE Processing Pipeline 26b5b8076d5acb819d4665dc89ca994d https://www.encodeproject.org/files/ENCFF341RWY/@@download/ENCFF341RWY.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF302IRN bigBed narrowPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF341RWY 2842664 ENCODE Processing Pipeline 71466ced3d5f9403ed752091bab27c3a https://www.encodeproject.org/files/ENCFF302IRN/@@download/ENCFF302IRN.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF071XQU bigBed narrowPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF329GHP 2579137 ENCODE Processing Pipeline 14f55932667e637c3cb659cdc997baa1 https://www.encodeproject.org/files/ENCFF071XQU/@@download/ENCFF071XQU.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF199GNL bigBed narrowPeak peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF029OJL 5470303 ENCODE Processing Pipeline 5ca9936f067b997fe2e426cf51af97cd https://www.encodeproject.org/files/ENCFF199GNL/@@download/ENCFF199GNL.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF804GZY bigWig signal p-value ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF465PJQ, ENCFF728RIQ 329902796 ENCODE Processing Pipeline 4cdbbe3662bac973bf82d0c1ca6be542 https://www.encodeproject.org/files/ENCFF804GZY/@@download/ENCFF804GZY.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF009NSJ bigWig signal p-value ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF349DCQ, ENCFF465PJQ 381671881 ENCODE Processing Pipeline a1eb19dc13c283d85b03741d479ab085 https://www.encodeproject.org/files/ENCFF009NSJ/@@download/ENCFF009NSJ.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF469ZOH bigWig signal p-value ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF349DCQ, ENCFF465PJQ, ENCFF728RIQ 372838942 ENCODE Processing Pipeline dd6efc3bfb00ca736c552da2ac5cc0a3 https://www.encodeproject.org/files/ENCFF469ZOH/@@download/ENCFF469ZOH.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF994PYN bigWig fold change over control ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF349DCQ, ENCFF465PJQ 723422208 ENCODE Processing Pipeline 62a77885d87d133054ae384b1c3a7fb1 https://www.encodeproject.org/files/ENCFF994PYN/@@download/ENCFF994PYN.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF316AQM bigWig fold change over control ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF465PJQ, ENCFF728RIQ 292306624 ENCODE Processing Pipeline 6b24ff97960f674dafaa35704980ee13 https://www.encodeproject.org/files/ENCFF316AQM/@@download/ENCFF316AQM.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF865YFU bigWig fold change over control ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF349DCQ, ENCFF465PJQ, ENCFF728RIQ 856743844 ENCODE Processing Pipeline c5250a42bba50be78d998e45f4bcbad9 https://www.encodeproject.org/files/ENCFF865YFU/@@download/ENCFF865YFU.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF950UIP bed narrowPeak replicated peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF029OJL, ENCFF329GHP, ENCFF341RWY 1222713 ENCODE Processing Pipeline c1c3db4804e91e026140596bded71828 https://www.encodeproject.org/files/ENCFF950UIP/@@download/ENCFF950UIP.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF369IAP bigBed narrowPeak replicated peaks ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF950UIP 2137144 ENCODE Processing Pipeline 2d2da6e56e1a1e35031e94bb6aa6bf52 https://www.encodeproject.org/files/ENCFF369IAP/@@download/ENCFF369IAP.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF002AFX fastq reads ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1129968057 Bing Ren, UCSD 5a95d4f54ab09c139a646ed62ee320d0 SRA:SRR3652153 https://www.encodeproject.org/files/ENCFF002AFX/@@download/ENCFF002AFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released low read length insufficient read depth, control insufficient read depth ENCFF002AGE fastq reads ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1308167013 Bing Ren, UCSD 0cfb3a10e88cc9efa29a5f2d471e3943 SRA:SRR3652152 https://www.encodeproject.org/files/ENCFF002AGE/@@download/ENCFF002AGE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APR/ released low read length insufficient read depth, control insufficient read depth ENCFF670YFF bam alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFX, ENCFF806TVZ 928416841 ENCODE Processing Pipeline 1648b34b9ebb44fb9bd14bc37e73fd62 https://www.encodeproject.org/files/ENCFF670YFF/@@download/ENCFF670YFF.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF162BUQ bam alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGE, ENCFF806TVZ 1042955981 ENCODE Processing Pipeline 5db15664e78a1dda3ea231f235a2bfca https://www.encodeproject.org/files/ENCFF162BUQ/@@download/ENCFF162BUQ.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF825UIS bed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF670YFF 887465 ENCODE Processing Pipeline a9926dc1e8606a4781b6317412736408 https://www.encodeproject.org/files/ENCFF825UIS/@@download/ENCFF825UIS.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF631RTA bed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF162BUQ, ENCFF893KXG 841538 ENCODE Processing Pipeline 6e588767f0868ef49bcdbf10cb5e76aa https://www.encodeproject.org/files/ENCFF631RTA/@@download/ENCFF631RTA.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF211NSB bigBed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF825UIS 1967648 ENCODE Processing Pipeline cdff3262c926ad305f469665e3cca8b2 https://www.encodeproject.org/files/ENCFF211NSB/@@download/ENCFF211NSB.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF800CCN bigBed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF890YSB 2646884 ENCODE Processing Pipeline 0342f6ae332bb869209b1a0ed2bc2464 https://www.encodeproject.org/files/ENCFF800CCN/@@download/ENCFF800CCN.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF890YSB bed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF162BUQ, ENCFF670YFF, ENCFF893KXG 1271974 ENCODE Processing Pipeline 7fb4068f4b25c8fb69400f47a11a2963 https://www.encodeproject.org/files/ENCFF890YSB/@@download/ENCFF890YSB.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF019HXM bigBed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF631RTA 1858539 ENCODE Processing Pipeline 85637a2eeb5b11dd529482fd92045931 https://www.encodeproject.org/files/ENCFF019HXM/@@download/ENCFF019HXM.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF851BJS bigWig signal p-value ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF670YFF 439965645 ENCODE Processing Pipeline cde07c370fbf2beca3364c28a1996977 https://www.encodeproject.org/files/ENCFF851BJS/@@download/ENCFF851BJS.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF337MUI bigWig signal p-value ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF162BUQ, ENCFF893KXG 624009082 ENCODE Processing Pipeline e8ee98f4a71de0c3a35a3e1939cb312e https://www.encodeproject.org/files/ENCFF337MUI/@@download/ENCFF337MUI.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF079JXD bigWig signal p-value ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF162BUQ, ENCFF670YFF, ENCFF893KXG 807121489 ENCODE Processing Pipeline f35155c186a109dbd51a107e72816d1a https://www.encodeproject.org/files/ENCFF079JXD/@@download/ENCFF079JXD.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF848HTX bigWig fold change over control ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF670YFF 433878474 ENCODE Processing Pipeline 941890414be93857a030582389281585 https://www.encodeproject.org/files/ENCFF848HTX/@@download/ENCFF848HTX.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF880MXR bigWig fold change over control ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF162BUQ, ENCFF893KXG 605923427 ENCODE Processing Pipeline 5df62de941c6f139614c859070087501 https://www.encodeproject.org/files/ENCFF880MXR/@@download/ENCFF880MXR.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF027ZJL bigWig fold change over control ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF162BUQ, ENCFF670YFF, ENCFF893KXG 898299262 ENCODE Processing Pipeline 819f03dc511a4b6644c9612302909b71 https://www.encodeproject.org/files/ENCFF027ZJL/@@download/ENCFF027ZJL.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF157HFP bed narrowPeak replicated peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF631RTA, ENCFF825UIS, ENCFF890YSB 473066 ENCODE Processing Pipeline 4aed1215a422300e329ed8cda1bda036 https://www.encodeproject.org/files/ENCFF157HFP/@@download/ENCFF157HFP.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF898OAW bigBed narrowPeak replicated peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF157HFP 1105747 ENCODE Processing Pipeline 038feb53a98f5443b58a0b6acf65bad5 https://www.encodeproject.org/files/ENCFF898OAW/@@download/ENCFF898OAW.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF556UDA bam unfiltered alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFX, ENCFF018NEO 1256880255 ENCODE Processing Pipeline 25e80ceea2fa5e9e1e921ddc7471de3f https://www.encodeproject.org/files/ENCFF556UDA/@@download/ENCFF556UDA.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF288CGE bam unfiltered alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGE, ENCFF018NEO 1444236734 ENCODE Processing Pipeline 6cb4765a817ec356cfcec60f12bfee76 https://www.encodeproject.org/files/ENCFF288CGE/@@download/ENCFF288CGE.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF675TIA bam alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFX, ENCFF018NEO 928246752 ENCODE Processing Pipeline 4254352b1640997890e1dcd12049c3f1 https://www.encodeproject.org/files/ENCFF675TIA/@@download/ENCFF675TIA.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF585VGP bam alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGE, ENCFF018NEO 1042780974 ENCODE Processing Pipeline b94c7326cf696dec3bb8d04a009ce361 https://www.encodeproject.org/files/ENCFF585VGP/@@download/ENCFF585VGP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF423YJG bed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF675TIA, ENCFF921XQX 883028 ENCODE Processing Pipeline 29e046afb9414bd65732c7e8f1586987 https://www.encodeproject.org/files/ENCFF423YJG/@@download/ENCFF423YJG.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF436FNZ bed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF585VGP, ENCFF921XQX 879443 ENCODE Processing Pipeline 575b686801d0ecb607c5d8ec9c614a7e https://www.encodeproject.org/files/ENCFF436FNZ/@@download/ENCFF436FNZ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF982IZF bed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF585VGP, ENCFF675TIA, ENCFF921XQX 1280232 ENCODE Processing Pipeline 636f9341c179cbad7ce8056ae2a7915c https://www.encodeproject.org/files/ENCFF982IZF/@@download/ENCFF982IZF.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF182SFF bigBed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF423YJG 1955775 ENCODE Processing Pipeline 3e6f98337df3a87d3f502515ef9a178f https://www.encodeproject.org/files/ENCFF182SFF/@@download/ENCFF182SFF.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF126YPK bigBed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF436FNZ 1942175 ENCODE Processing Pipeline aba6e1cd361f41e4699bf1c56f1422a0 https://www.encodeproject.org/files/ENCFF126YPK/@@download/ENCFF126YPK.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF171SIQ bigBed narrowPeak peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF982IZF 2657402 ENCODE Processing Pipeline cd54f86306e909b404455f4268da4eeb https://www.encodeproject.org/files/ENCFF171SIQ/@@download/ENCFF171SIQ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF176GGS bigWig signal p-value ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF675TIA, ENCFF921XQX 480856657 ENCODE Processing Pipeline 28e59d3c1e699f92ef304b3a58b6ffb8 https://www.encodeproject.org/files/ENCFF176GGS/@@download/ENCFF176GGS.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF778MHM bigWig signal p-value ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF585VGP, ENCFF921XQX 620883599 ENCODE Processing Pipeline d3588c37e3c7ebd55b693843be1991d0 https://www.encodeproject.org/files/ENCFF778MHM/@@download/ENCFF778MHM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF180HXX bigWig signal p-value ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF585VGP, ENCFF675TIA, ENCFF921XQX 804325691 ENCODE Processing Pipeline 64e6b1c14682f3a28c703e2c1b1b7d0f https://www.encodeproject.org/files/ENCFF180HXX/@@download/ENCFF180HXX.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF436YAO bigWig fold change over control ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF675TIA, ENCFF921XQX 434229140 ENCODE Processing Pipeline d1f8ad4f0dcbd39966714ad8d1c9e2b9 https://www.encodeproject.org/files/ENCFF436YAO/@@download/ENCFF436YAO.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF184MNA bigWig fold change over control ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF585VGP, ENCFF921XQX 620398131 ENCODE Processing Pipeline e1bd5cf60fa27d535c99133438efbf14 https://www.encodeproject.org/files/ENCFF184MNA/@@download/ENCFF184MNA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF344FSI bigWig fold change over control ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF585VGP, ENCFF675TIA, ENCFF921XQX 901827272 ENCODE Processing Pipeline 0eea4f237b2a41396ff61640752586cf https://www.encodeproject.org/files/ENCFF344FSI/@@download/ENCFF344FSI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF703RVX bed narrowPeak replicated peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF423YJG, ENCFF436FNZ, ENCFF982IZF 446722 ENCODE Processing Pipeline ef13d8e924fb2ba66475f4f5529a44fa https://www.encodeproject.org/files/ENCFF703RVX/@@download/ENCFF703RVX.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF786UUE bigBed narrowPeak replicated peaks ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF703RVX 1047848 ENCODE Processing Pipeline 608901fd92919e19e410ecd059cc1856 https://www.encodeproject.org/files/ENCFF786UUE/@@download/ENCFF786UUE.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001KIE bam alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KIM 348908056 Bing Ren, UCSD feb02168f8c85b2e60ad19543ba83878 https://www.encodeproject.org/files/ENCFF001KIE/@@download/ENCFF001KIE.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KIG bam alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KIL 640917556 Bing Ren, UCSD be4c2edd96dd39e292050f2798c2bb16 https://www.encodeproject.org/files/ENCFF001KIG/@@download/ENCFF001KIG.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KIH bigWig signal ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KIE, ENCFF001KIG 65388984 Bing Ren, UCSD 60f1994aa5a22524f6251db08c27d726 https://www.encodeproject.org/files/ENCFF001KIH/@@download/ENCFF001KIH.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KIL fastq reads ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 657334146 Bing Ren, UCSD 3dc2646edfdf410eb74632b274b96965 https://www.encodeproject.org/files/ENCFF001KIL/@@download/ENCFF001KIL.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF001KIM fastq reads ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 891353581 Bing Ren, UCSD 0eb84a19e73777eb3515637a9dc6955b https://www.encodeproject.org/files/ENCFF001KIM/@@download/ENCFF001KIM.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF628EZY bam unfiltered alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KIL, ENCFF806TVZ 770572990 J. Michael Cherry, Stanford 025ba9253956edca3b8ae635681d5b5b https://www.encodeproject.org/files/ENCFF628EZY/@@download/ENCFF628EZY.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF507VIZ bam unfiltered alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KIM, ENCFF806TVZ 963610376 J. Michael Cherry, Stanford aa12ddcea02a642296fe6ec3f4ed5f5a https://www.encodeproject.org/files/ENCFF507VIZ/@@download/ENCFF507VIZ.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF262EEH bam alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KIL, ENCFF018NEO 511138101 ENCODE Processing Pipeline a3c9a7e0cfbc376d49fd4e8c6ad69f08 https://www.encodeproject.org/files/ENCFF262EEH/@@download/ENCFF262EEH.bam mm10 released low read length, low read depth insufficient read depth ENCFF465PJQ bam alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KIM, ENCFF018NEO 354135641 ENCODE Processing Pipeline b48764707ef9358ea9da15777877ab9a https://www.encodeproject.org/files/ENCFF465PJQ/@@download/ENCFF465PJQ.bam mm10 released low read length, low read depth insufficient read depth ENCFF922MIC bam unfiltered alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KIM, ENCFF018NEO 964916394 ENCODE Processing Pipeline 8b7452fe55fd91b335f7f697c381e863 https://www.encodeproject.org/files/ENCFF922MIC/@@download/ENCFF922MIC.bam mm10 released low read length, low read depth insufficient read depth ENCFF733SOM bam unfiltered alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KIL, ENCFF018NEO 771188218 ENCODE Processing Pipeline 9e0f4384c42bc47153f0647af528962e https://www.encodeproject.org/files/ENCFF733SOM/@@download/ENCFF733SOM.bam mm10 released low read length, low read depth insufficient read depth ENCFF001MSK bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MSM 1028719350 Ross Hardison, PennState 1ad8e395ae74d1e6e0d2aba9d9879298 https://www.encodeproject.org/files/ENCFF001MSK/@@download/ENCFF001MSK.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MSM fastq reads ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 800717692 Ross Hardison, PennState d2a5e2371f4dbe7aa4441f811c491da8 https://www.encodeproject.org/files/ENCFF001MSM/@@download/ENCFF001MSM.fastq.gz Illumina Genome Analyzer IIx released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MSN bigWig signal ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1657187666 Ross Hardison, PennState a647363fc3c7a526395f2fd078e0925f https://www.encodeproject.org/files/ENCFF001MSN/@@download/ENCFF001MSN.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MSO bigWig signal ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 6045191804 Ross Hardison, PennState 41ee6e553da1b76f869a2227e5350e13 https://www.encodeproject.org/files/ENCFF001MSO/@@download/ENCFF001MSO.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MSP bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSW 7614913216 Ross Hardison, PennState d547ae54e89c38bbfe6e12b88ac83b29 https://www.encodeproject.org/files/ENCFF001MSP/@@download/ENCFF001MSP.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MSQ bigWig signal ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 6070118250 Ross Hardison, PennState bab3b99c521c19487b65a4e850ee2546 https://www.encodeproject.org/files/ENCFF001MSQ/@@download/ENCFF001MSQ.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MSW fastq reads ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 6612112910 Ross Hardison, PennState 17b1a82c966438e13ee5b05c84b44d44 https://www.encodeproject.org/files/ENCFF001MSW/@@download/ENCFF001MSW.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF328CRA bam unfiltered alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSW, ENCFF806TVZ 7960901121 J. Michael Cherry, Stanford 07840d2c2f5daff57b9a34840a2f724e https://www.encodeproject.org/files/ENCFF328CRA/@@download/ENCFF328CRA.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF710PST bam unfiltered alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MSM, ENCFF806TVZ 1084034937 J. Michael Cherry, Stanford aafc89172d1c4b46706640bd68adda63 https://www.encodeproject.org/files/ENCFF710PST/@@download/ENCFF710PST.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF311GKP bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSW, ENCFF806TVZ 5889488451 J. Michael Cherry, Stanford 35dc8e52d27903e5f805bfb5a7cf7214 https://www.encodeproject.org/files/ENCFF311GKP/@@download/ENCFF311GKP.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF015YQP bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MSM, ENCFF806TVZ 748338868 J. Michael Cherry, Stanford 2c94cedc9a79514c7176a6b08fda9fe6 https://www.encodeproject.org/files/ENCFF015YQP/@@download/ENCFF015YQP.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF383IWZ bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSM, ENCFF018NEO 748074240 ENCODE Processing Pipeline 2755b89175dac5164582621a3691a259 https://www.encodeproject.org/files/ENCFF383IWZ/@@download/ENCFF383IWZ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF844DQA bam unfiltered alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSM, ENCFF018NEO 1085285257 ENCODE Processing Pipeline fbce0a094fe24a9a80bc823e4ba7b8de https://www.encodeproject.org/files/ENCFF844DQA/@@download/ENCFF844DQA.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF585VFF bam unfiltered alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSW, ENCFF018NEO 6302744748 ENCODE Processing Pipeline 3974bcaaca30fedd99b467036794d6a5 https://www.encodeproject.org/files/ENCFF585VFF/@@download/ENCFF585VFF.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF676LVI bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSW, ENCFF018NEO 4458822767 ENCODE Processing Pipeline 4d8f5b0eb60ae24c7f16a629225e27bd https://www.encodeproject.org/files/ENCFF676LVI/@@download/ENCFF676LVI.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF002AJS fastq reads ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1599943539 Bing Ren, UCSD 050069fd92fe7f293b31b4eb4b86e8ff SRA:SRR3653070 https://www.encodeproject.org/files/ENCFF002AJS/@@download/ENCFF002AJS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQI/ released control low read depth, antibody characterized with exemption, inconsistent control read length insufficient read depth ENCFF002AJT fastq reads ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1518133887 Bing Ren, UCSD 6c0f96612aa8ce5a22cba56de0a5f4e8 SRA:SRR3653071 https://www.encodeproject.org/files/ENCFF002AJT/@@download/ENCFF002AJT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQJ/ released control low read depth, antibody characterized with exemption, inconsistent control read length insufficient read depth ENCFF182LIJ bam alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJT, ENCFF806TVZ 1370932365 ENCODE Processing Pipeline 3178afb74f0caf886e2805bb46ecf2e0 https://www.encodeproject.org/files/ENCFF182LIJ/@@download/ENCFF182LIJ.bam mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF282WRJ bam alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJS, ENCFF806TVZ 1422631983 ENCODE Processing Pipeline 5471f3581596bd7e5858df65e9054daa https://www.encodeproject.org/files/ENCFF282WRJ/@@download/ENCFF282WRJ.bam mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF853LOE bed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF182LIJ, ENCFF271DZZ, ENCFF991ANF 1658519 ENCODE Processing Pipeline f9aa5011b425883c000b3fb1c08c5b30 https://www.encodeproject.org/files/ENCFF853LOE/@@download/ENCFF853LOE.bed.gz mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF944PDL bed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF282WRJ, ENCFF991ANF 1902174 ENCODE Processing Pipeline d1211d196c5af08bf6d00a00d8fa3037 https://www.encodeproject.org/files/ENCFF944PDL/@@download/ENCFF944PDL.bed.gz mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF861RBG bed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182LIJ, ENCFF271DZZ, ENCFF282WRJ, ENCFF991ANF 1566355 ENCODE Processing Pipeline 4369be91ec1a165b0acfdc68c48a26bf https://www.encodeproject.org/files/ENCFF861RBG/@@download/ENCFF861RBG.bed.gz mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF989XSA bigBed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF853LOE 3841233 ENCODE Processing Pipeline 4e1cc0f9aab2d1f34d649780088f81e8 https://www.encodeproject.org/files/ENCFF989XSA/@@download/ENCFF989XSA.bigBed mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF914VWB bigBed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF944PDL 4274305 ENCODE Processing Pipeline 698bd76f6d2c47d65ee3320be382f76b https://www.encodeproject.org/files/ENCFF914VWB/@@download/ENCFF914VWB.bigBed mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF220SVB bigBed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF861RBG 3576268 ENCODE Processing Pipeline f9b8c42900a24fead78dcb0a391282a1 https://www.encodeproject.org/files/ENCFF220SVB/@@download/ENCFF220SVB.bigBed mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF805LXY bigWig signal p-value ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF182LIJ, ENCFF271DZZ, ENCFF991ANF 512331362 ENCODE Processing Pipeline 4cb4b8f5fb77a0b1f6fc5fa7c3a3cd0f https://www.encodeproject.org/files/ENCFF805LXY/@@download/ENCFF805LXY.bigWig mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF883OQM bigWig signal p-value ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF282WRJ, ENCFF991ANF 541732798 ENCODE Processing Pipeline 3da84d093daff46c3565f1a9a9abaa1c https://www.encodeproject.org/files/ENCFF883OQM/@@download/ENCFF883OQM.bigWig mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF905EDR bigWig signal p-value ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182LIJ, ENCFF271DZZ, ENCFF282WRJ, ENCFF991ANF 739549863 ENCODE Processing Pipeline dc4adf7dd77d71b9a9544fe8c3a9399f https://www.encodeproject.org/files/ENCFF905EDR/@@download/ENCFF905EDR.bigWig mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF293ZXQ bigWig fold change over control ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF182LIJ, ENCFF271DZZ, ENCFF991ANF 564124834 ENCODE Processing Pipeline e49c0ea7779c0123ca434f97565594be https://www.encodeproject.org/files/ENCFF293ZXQ/@@download/ENCFF293ZXQ.bigWig mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF841BQL bigWig fold change over control ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271DZZ, ENCFF282WRJ, ENCFF991ANF 563398688 ENCODE Processing Pipeline d5dde4229ea8ff4a49f5fcfa4e68317c https://www.encodeproject.org/files/ENCFF841BQL/@@download/ENCFF841BQL.bigWig mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF146WPE bigWig fold change over control ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182LIJ, ENCFF271DZZ, ENCFF282WRJ, ENCFF991ANF 890736334 ENCODE Processing Pipeline b19150946081669aee2a584037c351d1 https://www.encodeproject.org/files/ENCFF146WPE/@@download/ENCFF146WPE.bigWig mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF525DID bed narrowPeak replicated peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF853LOE, ENCFF861RBG, ENCFF944PDL 1267361 ENCODE Processing Pipeline 56b54fec5822644e2d35d076a998e824 https://www.encodeproject.org/files/ENCFF525DID/@@download/ENCFF525DID.bed.gz mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF432YIW bigBed narrowPeak replicated peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF525DID 2510959 ENCODE Processing Pipeline 221f09b16f03d3ea336037166cd8422f https://www.encodeproject.org/files/ENCFF432YIW/@@download/ENCFF432YIW.bigBed mm10-minimal archived control low read depth, antibody characterized with exemption insufficient read depth ENCFF740IAL bam alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJS, ENCFF018NEO 1106169370 ENCODE Processing Pipeline 68a9d46cc82ad414ef6d0b90585baee2 https://www.encodeproject.org/files/ENCFF740IAL/@@download/ENCFF740IAL.bam mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF261JJU bam unfiltered alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJT, ENCFF018NEO 1404690821 ENCODE Processing Pipeline fa72d678bccde49f40f375228df22ced https://www.encodeproject.org/files/ENCFF261JJU/@@download/ENCFF261JJU.bam mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF232TNZ bam unfiltered alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJS, ENCFF018NEO 1457065699 ENCODE Processing Pipeline bc47ffdddd604382f511feebdaaac6bf https://www.encodeproject.org/files/ENCFF232TNZ/@@download/ENCFF232TNZ.bam mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF080ZOV bam alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJT, ENCFF018NEO 1060055527 ENCODE Processing Pipeline 97277b1b368f251bdae2982cb37bd464 https://www.encodeproject.org/files/ENCFF080ZOV/@@download/ENCFF080ZOV.bam mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF534ZIM bigBed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF834DCQ 3669952 ENCODE Processing Pipeline a2bd58da4e4ab6c018ce169ef5fb30e4 https://www.encodeproject.org/files/ENCFF534ZIM/@@download/ENCFF534ZIM.bigBed mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF759MCS bigBed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF114ZGM 4068005 ENCODE Processing Pipeline ac14671c879c43cceb6d32429b314d4a https://www.encodeproject.org/files/ENCFF759MCS/@@download/ENCFF759MCS.bigBed mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF570UKK bed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF740IAL, ENCFF945UFA 1895905 ENCODE Processing Pipeline 6062c3a6e5446b877a1cedd29628c31b https://www.encodeproject.org/files/ENCFF570UKK/@@download/ENCFF570UKK.bed.gz mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF755WTA bigWig signal p-value ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF080ZOV, ENCFF688CVA, ENCFF945UFA 448576836 ENCODE Processing Pipeline 72e02d550b1d78651dfdfabc8d6583a0 https://www.encodeproject.org/files/ENCFF755WTA/@@download/ENCFF755WTA.bigWig mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF203ALA bigWig signal p-value ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF740IAL, ENCFF945UFA 481806155 ENCODE Processing Pipeline 65ab149255c96ec89c8f12b06ac848f1 https://www.encodeproject.org/files/ENCFF203ALA/@@download/ENCFF203ALA.bigWig mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF834DCQ bed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF080ZOV, ENCFF688CVA, ENCFF945UFA 1582741 ENCODE Processing Pipeline b6b71300de7a94a8feb153865f40c646 https://www.encodeproject.org/files/ENCFF834DCQ/@@download/ENCFF834DCQ.bed.gz mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF409WEK bigBed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF570UKK 4302315 ENCODE Processing Pipeline b476ea9887642165f6e256a49f8de96d https://www.encodeproject.org/files/ENCFF409WEK/@@download/ENCFF409WEK.bigBed mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF114ZGM bed narrowPeak peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080ZOV, ENCFF688CVA, ENCFF740IAL, ENCFF945UFA 1809432 ENCODE Processing Pipeline 8fbb6f9a6103e78044a2cb9a6acc93d3 https://www.encodeproject.org/files/ENCFF114ZGM/@@download/ENCFF114ZGM.bed.gz mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF403DFZ bigWig signal p-value ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080ZOV, ENCFF688CVA, ENCFF740IAL, ENCFF945UFA 739733974 ENCODE Processing Pipeline 39939349891b6de7e49e327cf71067b6 https://www.encodeproject.org/files/ENCFF403DFZ/@@download/ENCFF403DFZ.bigWig mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF511XYL bigWig fold change over control ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF080ZOV, ENCFF688CVA, ENCFF945UFA 541549000 ENCODE Processing Pipeline 57cff9a0df7eee5e905e44bb14e9fdfb https://www.encodeproject.org/files/ENCFF511XYL/@@download/ENCFF511XYL.bigWig mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF777TSZ bigWig fold change over control ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF740IAL, ENCFF945UFA 561070866 ENCODE Processing Pipeline 314277910d965c3f84d74003c9a6a233 https://www.encodeproject.org/files/ENCFF777TSZ/@@download/ENCFF777TSZ.bigWig mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF451RNW bigWig fold change over control ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080ZOV, ENCFF688CVA, ENCFF740IAL, ENCFF945UFA 858024929 ENCODE Processing Pipeline 481a2bdd205ea79250ba4a146eb5cb9f https://www.encodeproject.org/files/ENCFF451RNW/@@download/ENCFF451RNW.bigWig mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF538ZFG bigBed narrowPeak replicated peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF034OKB 2401665 ENCODE Processing Pipeline 3f4f3e44461e14852d764e1cdbdc69f0 https://www.encodeproject.org/files/ENCFF538ZFG/@@download/ENCFF538ZFG.bigBed mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF034OKB bed narrowPeak replicated peaks ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF114ZGM, ENCFF570UKK, ENCFF834DCQ 1214094 ENCODE Processing Pipeline c3128edb4507ffe3cfcbfd282388a67f https://www.encodeproject.org/files/ENCFF034OKB/@@download/ENCFF034OKB.bed.gz mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF001LIO bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIY 655886713 Bing Ren, UCSD ff91d21de7bd0410ebe7d488669b652a https://www.encodeproject.org/files/ENCFF001LIO/@@download/ENCFF001LIO.bam mm9 released low read length insufficient read depth ENCFF001LIP bigBed broadPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAC 772325 Bing Ren, UCSD cbaf068e4891980701433ac2e6908d65 https://www.encodeproject.org/files/ENCFF001LIP/@@download/ENCFF001LIP.bigBed mm9 released low read length insufficient read depth ENCFF001LIQ fasta reads ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 272571716 Bing Ren, UCSD 1ce4c2749fd009cc210f576c0445b329 https://www.encodeproject.org/files/ENCFF001LIQ/@@download/ENCFF001LIQ.fasta.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length insufficient read depth ENCFF001LIR bigWig signal ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIO, ENCFF001LIS 74672152 Bing Ren, UCSD cd5bb360fd3b7f6ba363298d9725db24 https://www.encodeproject.org/files/ENCFF001LIR/@@download/ENCFF001LIR.bigWig mm9 released low read length insufficient read depth ENCFF001LIS bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIQ 376062057 Bing Ren, UCSD a8da9a71ed2a19b289a21e67659793a7 https://www.encodeproject.org/files/ENCFF001LIS/@@download/ENCFF001LIS.bam mm9 released low read length insufficient read depth ENCFF001LIY fastq reads ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 748161937 Bing Ren, UCSD 395a8989661e9371c76790b9df3fede5 https://www.encodeproject.org/files/ENCFF001LIY/@@download/ENCFF001LIY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length insufficient read depth ENCFF001YAC bed broadPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIO, ENCFF001LIS 468131 Bing Ren, UCSD 6254f6bd93a625cd811483e4e4e8a969 https://www.encodeproject.org/files/ENCFF001YAC/@@download/ENCFF001YAC.bed.gz mm9 released low read length insufficient read depth ENCFF377NUX bam unfiltered alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 812994048 ENCODE Processing Pipeline 6dca092053ea624ee2f4ea89baff96f2 https://www.encodeproject.org/files/ENCFF377NUX/@@download/ENCFF377NUX.bam mm10 released low read length insufficient read depth ENCFF269TJX bam unfiltered alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 432703351 ENCODE Processing Pipeline 220daf1a5bb5770036bf7001377baa08 https://www.encodeproject.org/files/ENCFF269TJX/@@download/ENCFF269TJX.bam mm10 released low read length insufficient read depth ENCFF061WVR bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 449095333 ENCODE Processing Pipeline 86018524d1abbaffcf30826a612cdcea https://www.encodeproject.org/files/ENCFF061WVR/@@download/ENCFF061WVR.bam mm10 released low read length insufficient read depth ENCFF285RBT bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 208725304 ENCODE Processing Pipeline 4576fb73270b4e92a1eb9d262944317a https://www.encodeproject.org/files/ENCFF285RBT/@@download/ENCFF285RBT.bam mm10 released low read length insufficient read depth ENCFF360ITA bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 393427388 ENCODE Processing Pipeline 8791db6b2b274da2916e1bd969c5b910 https://www.encodeproject.org/files/ENCFF360ITA/@@download/ENCFF360ITA.bigWig mm10 released low read length insufficient read depth ENCFF069PTO bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 474113855 ENCODE Processing Pipeline 836969e0051aaccadf0621ee009aa193 https://www.encodeproject.org/files/ENCFF069PTO/@@download/ENCFF069PTO.bigWig mm10 released low read length insufficient read depth ENCFF846EML bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF926DQD 1109781 ENCODE Processing Pipeline 48f7c05620658a4e4b8f66114f10334f https://www.encodeproject.org/files/ENCFF846EML/@@download/ENCFF846EML.bigBed mm10 released low read length insufficient read depth ENCFF339GSH bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 355896775 ENCODE Processing Pipeline d583f92cbc3b4aeb038c8e9f7425f1bc https://www.encodeproject.org/files/ENCFF339GSH/@@download/ENCFF339GSH.bigWig mm10 released low read length insufficient read depth ENCFF520LES bed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 2682856 ENCODE Processing Pipeline 4bdadefd44917178aae088c233af797b https://www.encodeproject.org/files/ENCFF520LES/@@download/ENCFF520LES.bed.gz mm10 released low read length insufficient read depth ENCFF844FJE bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF508CKL 1199405 ENCODE Processing Pipeline ac351b3a87798d7bf6a559f6c041411e https://www.encodeproject.org/files/ENCFF844FJE/@@download/ENCFF844FJE.bigBed mm10 released low read length insufficient read depth ENCFF634ZNO bed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 2523345 ENCODE Processing Pipeline d593f3eb14e13163ba33525cb7dd9481 https://www.encodeproject.org/files/ENCFF634ZNO/@@download/ENCFF634ZNO.bed.gz mm10 released low read length insufficient read depth ENCFF929SPK bigBed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF229BOI 7315533 ENCODE Processing Pipeline 562a2b3b2df3aae973fb21f5601b6fcf https://www.encodeproject.org/files/ENCFF929SPK/@@download/ENCFF929SPK.bigBed mm10 released low read length insufficient read depth ENCFF709CZX bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 348457432 ENCODE Processing Pipeline d974e90cac91682673f7b5020a968125 https://www.encodeproject.org/files/ENCFF709CZX/@@download/ENCFF709CZX.bigWig mm10 released low read length insufficient read depth ENCFF818DTC bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 231114445 ENCODE Processing Pipeline 6fac73ecffe2943243abdada47587b7c https://www.encodeproject.org/files/ENCFF818DTC/@@download/ENCFF818DTC.bigWig mm10 released low read length insufficient read depth ENCFF409PBR bigBed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF520LES 6122436 ENCODE Processing Pipeline 0e81933448e5998c461ae9684995cd0e https://www.encodeproject.org/files/ENCFF409PBR/@@download/ENCFF409PBR.bigBed mm10 released low read length insufficient read depth ENCFF867SYU bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 194264263 ENCODE Processing Pipeline 90da356462ad315ef28e34c563e1571a https://www.encodeproject.org/files/ENCFF867SYU/@@download/ENCFF867SYU.bigWig mm10 released low read length insufficient read depth ENCFF229BOI bed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 3076662 ENCODE Processing Pipeline 6ef32fe6c60b463dc651d178c1c7a482 https://www.encodeproject.org/files/ENCFF229BOI/@@download/ENCFF229BOI.bed.gz mm10 released low read length insufficient read depth ENCFF904JMP bigBed narrowPeak peaks and background as input for IDR ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF634ZNO 5130597 ENCODE Processing Pipeline 6d410e469dc5c032f5b2d18644d8784f https://www.encodeproject.org/files/ENCFF904JMP/@@download/ENCFF904JMP.bigBed mm10 released low read length insufficient read depth ENCFF926DQD bed narrowPeak conservative idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF229BOI, ENCFF520LES, ENCFF547MET, ENCFF634ZNO 597955 ENCODE Processing Pipeline e583e34b868090b7ab0cbcd43ab5c24a https://www.encodeproject.org/files/ENCFF926DQD/@@download/ENCFF926DQD.bed.gz mm10 released low read length insufficient read depth ENCFF508CKL bed narrowPeak optimal idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF229BOI, ENCFF520LES, ENCFF547MET, ENCFF634ZNO 662595 ENCODE Processing Pipeline 47204ccf6b524aae64a0e776b25956aa https://www.encodeproject.org/files/ENCFF508CKL/@@download/ENCFF508CKL.bed.gz mm10 released low read length insufficient read depth ENCFF001KPW bigBed broadPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYJ 526574 Bing Ren, UCSD 98adc81b1a026a2e08acaa2c885f2aee https://www.encodeproject.org/files/ENCFF001KPW/@@download/ENCFF001KPW.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KPX bam alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KQJ 1156411524 Bing Ren, UCSD af90ea7df1812dfb4d992f23e0c87d9a https://www.encodeproject.org/files/ENCFF001KPX/@@download/ENCFF001KPX.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KPY bam alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KQN 1953732681 Bing Ren, UCSD 1efd4648cad5fe8664d9a77c915bc67c https://www.encodeproject.org/files/ENCFF001KPY/@@download/ENCFF001KPY.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KPZ bigWig signal ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KPX, ENCFF001KPY 23724363 Bing Ren, UCSD 1f45537e248d5ebd38b92cc7b8a36bba https://www.encodeproject.org/files/ENCFF001KPZ/@@download/ENCFF001KPZ.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KQJ fastq reads ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1201108599 Bing Ren, UCSD 5d7573ebf68ea6120cf67850063581e2 https://www.encodeproject.org/files/ENCFF001KQJ/@@download/ENCFF001KQJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KQN fastq reads ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 2098870664 Bing Ren, UCSD f304dc4093548b512b45e09007c585ac https://www.encodeproject.org/files/ENCFF001KQN/@@download/ENCFF001KQN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XYJ bed broadPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KPX, ENCFF001KPY 327206 Bing Ren, UCSD 5ff0c4a77990a53a93e919595f351306 https://www.encodeproject.org/files/ENCFF001XYJ/@@download/ENCFF001XYJ.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF513LDX bam unfiltered alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQJ, ENCFF018NEO 1187586994 ENCODE Processing Pipeline 75c86340da2185a6f358afe558b5e344 https://www.encodeproject.org/files/ENCFF513LDX/@@download/ENCFF513LDX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF544CJF bam unfiltered alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQN, ENCFF018NEO 1973715413 ENCODE Processing Pipeline c19c716c163ccb1e81ecd533b2942543 https://www.encodeproject.org/files/ENCFF544CJF/@@download/ENCFF544CJF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF540MLY bam alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQJ, ENCFF018NEO 582965762 ENCODE Processing Pipeline 543b56ba72ac032115d9766971524394 https://www.encodeproject.org/files/ENCFF540MLY/@@download/ENCFF540MLY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF386HMH bam alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQN, ENCFF018NEO 533439395 ENCODE Processing Pipeline 1614a0909be5f641b20515ebfe10dedc https://www.encodeproject.org/files/ENCFF386HMH/@@download/ENCFF386HMH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF514DRI bed narrowPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF386HMH, ENCFF780TFB 1075494 ENCODE Processing Pipeline 64bde29f188de96b1a162024a32964a6 https://www.encodeproject.org/files/ENCFF514DRI/@@download/ENCFF514DRI.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF439FNG bed narrowPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF540MLY, ENCFF780TFB 800979 ENCODE Processing Pipeline 2de0293c068f480fd8e9fb7fc2d5d8f8 https://www.encodeproject.org/files/ENCFF439FNG/@@download/ENCFF439FNG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF865FNR bed narrowPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF386HMH, ENCFF540MLY, ENCFF780TFB 957636 ENCODE Processing Pipeline 5f6713be32c526a8fe59c038be926863 https://www.encodeproject.org/files/ENCFF865FNR/@@download/ENCFF865FNR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF769NJT bigBed narrowPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF439FNG 2265414 ENCODE Processing Pipeline 8fd35ceac5804f2c49d2175f5265fc60 https://www.encodeproject.org/files/ENCFF769NJT/@@download/ENCFF769NJT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF613YBU bigBed narrowPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF865FNR 2555947 ENCODE Processing Pipeline b37dfca97072668c0ede660efaa4c31a https://www.encodeproject.org/files/ENCFF613YBU/@@download/ENCFF613YBU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF580RWH bigBed narrowPeak peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF514DRI 2907317 ENCODE Processing Pipeline 55ee4c46ab156ccd85c2dd2a6922af10 https://www.encodeproject.org/files/ENCFF580RWH/@@download/ENCFF580RWH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF386RJY bigWig signal p-value ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF386HMH, ENCFF780TFB 258558046 ENCODE Processing Pipeline fcd6da3187380c5153781f91c29503e8 https://www.encodeproject.org/files/ENCFF386RJY/@@download/ENCFF386RJY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF821YLR bigWig fold change over control ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF540MLY, ENCFF780TFB 163842936 ENCODE Processing Pipeline 35a21d09a16f148652c9913455229f30 https://www.encodeproject.org/files/ENCFF821YLR/@@download/ENCFF821YLR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF384WBX bigWig signal p-value ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF540MLY, ENCFF780TFB 171051825 ENCODE Processing Pipeline 41c8457d0df0ebe85a1ffdddcec0e429 https://www.encodeproject.org/files/ENCFF384WBX/@@download/ENCFF384WBX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF857CJN bigWig signal p-value ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF386HMH, ENCFF540MLY, ENCFF780TFB 277174660 ENCODE Processing Pipeline 549e138616614b5923d16b94fbcde1e1 https://www.encodeproject.org/files/ENCFF857CJN/@@download/ENCFF857CJN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF321IDF bigWig fold change over control ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF386HMH, ENCFF780TFB 180062808 ENCODE Processing Pipeline d906e34528bf6c9524778523444c505b https://www.encodeproject.org/files/ENCFF321IDF/@@download/ENCFF321IDF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF603CPU bigWig fold change over control ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF386HMH, ENCFF540MLY, ENCFF780TFB 299426970 ENCODE Processing Pipeline 46c532ccabad6e224acedb35c1214be0 https://www.encodeproject.org/files/ENCFF603CPU/@@download/ENCFF603CPU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF993IWG bed narrowPeak replicated peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF439FNG, ENCFF514DRI, ENCFF865FNR 1228546 ENCODE Processing Pipeline dfe367f6d9dce814c2258a6be96d56c6 https://www.encodeproject.org/files/ENCFF993IWG/@@download/ENCFF993IWG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF079ONA bigBed narrowPeak replicated peaks ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF993IWG 2393047 ENCODE Processing Pipeline 4e3b2e7059e64f5ea7e5bc2a159331bd https://www.encodeproject.org/files/ENCFF079ONA/@@download/ENCFF079ONA.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF002AJV fastq reads ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 751417525 Bing Ren, UCSD fe31f2fd9c3f31984535d42d216f279f SRA:SRR3651892 https://www.encodeproject.org/files/ENCFF002AJV/@@download/ENCFF002AJV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQP/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AJX fastq reads ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 742710774 Bing Ren, UCSD 91968a15a86ac95b1dd226ee4f3545f9 SRA:SRR3651890 https://www.encodeproject.org/files/ENCFF002AJX/@@download/ENCFF002AJX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQN/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF623QLF fastq reads ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 506201378 Bing Ren, UCSD 51da14d3c1e0925f2116b89883ded0e8 SRA:SRR3651893 https://www.encodeproject.org/files/ENCFF623QLF/@@download/ENCFF623QLF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF015KEE fastq reads ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 451128798 Bing Ren, UCSD 116af32884393f9883cba3ce669b5fa1 SRA:SRR3651891 https://www.encodeproject.org/files/ENCFF015KEE/@@download/ENCFF015KEE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQN/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF930TPC bam alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJX, ENCFF015KEE, ENCFF806TVZ 1217691262 ENCODE Processing Pipeline fdcf96c420587dfd810cc4ae68c59b45 https://www.encodeproject.org/files/ENCFF930TPC/@@download/ENCFF930TPC.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF167KUZ bam alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJV, ENCFF623QLF, ENCFF806TVZ 1257554232 ENCODE Processing Pipeline aacbdf206852db4e9a5efe2fa61cbaf2 https://www.encodeproject.org/files/ENCFF167KUZ/@@download/ENCFF167KUZ.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF327USF bed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167KUZ, ENCFF362MXD, ENCFF576KAS, ENCFF930TPC 2177772 ENCODE Processing Pipeline 8952dd0da40df48273b2cb502180a2ab https://www.encodeproject.org/files/ENCFF327USF/@@download/ENCFF327USF.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF945NPH bed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF930TPC 2555150 ENCODE Processing Pipeline c752fdafccca6a3cc63642f4b15bb3d4 https://www.encodeproject.org/files/ENCFF945NPH/@@download/ENCFF945NPH.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF607QBS bigWig signal p-value ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF167KUZ, ENCFF362MXD, ENCFF576KAS 574118741 ENCODE Processing Pipeline 6653a9be0e973fcb750f4884d3959fdc https://www.encodeproject.org/files/ENCFF607QBS/@@download/ENCFF607QBS.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF543LPG bigBed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF776ETM 3828970 ENCODE Processing Pipeline a657a129e03cfc629e2f5917ca1fb551 https://www.encodeproject.org/files/ENCFF543LPG/@@download/ENCFF543LPG.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF761OFN bigWig signal p-value ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF930TPC 462552476 ENCODE Processing Pipeline ca7b5a47ea9347e29979b0ca585dcb14 https://www.encodeproject.org/files/ENCFF761OFN/@@download/ENCFF761OFN.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF776ETM bed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF167KUZ, ENCFF362MXD, ENCFF576KAS 1697337 ENCODE Processing Pipeline 1d511eae8bc86b4fef87a0f00df36b5f https://www.encodeproject.org/files/ENCFF776ETM/@@download/ENCFF776ETM.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF284JUI bigBed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF945NPH 5309346 ENCODE Processing Pipeline 4887d9e149ea9e160e175bad8897c336 https://www.encodeproject.org/files/ENCFF284JUI/@@download/ENCFF284JUI.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF024KTH bigBed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF327USF 4622029 ENCODE Processing Pipeline 4dbf8a628c78659f06225a4e24d30783 https://www.encodeproject.org/files/ENCFF024KTH/@@download/ENCFF024KTH.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF632FBL bigWig signal p-value ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167KUZ, ENCFF362MXD, ENCFF576KAS, ENCFF930TPC 756708991 ENCODE Processing Pipeline 3fc54a8de3b188ba2d58750d79dce471 https://www.encodeproject.org/files/ENCFF632FBL/@@download/ENCFF632FBL.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF411IBJ bigWig fold change over control ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF167KUZ, ENCFF362MXD, ENCFF576KAS 534804329 ENCODE Processing Pipeline 3eb30e6c95433de60934dbca2c0a22e4 https://www.encodeproject.org/files/ENCFF411IBJ/@@download/ENCFF411IBJ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF022ERB bigWig fold change over control ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF930TPC 524744986 ENCODE Processing Pipeline fed116dbb65f756b47d464f86cc0bd8e https://www.encodeproject.org/files/ENCFF022ERB/@@download/ENCFF022ERB.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF050CXB bed narrowPeak replicated peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF327USF, ENCFF776ETM, ENCFF945NPH 1537695 ENCODE Processing Pipeline b8131b4a373c937014192ce17687eb85 https://www.encodeproject.org/files/ENCFF050CXB/@@download/ENCFF050CXB.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF987TFU bigWig fold change over control ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167KUZ, ENCFF362MXD, ENCFF576KAS, ENCFF930TPC 854676641 ENCODE Processing Pipeline 9cc9506f6908b0e08bd1ce3dab3bbf71 https://www.encodeproject.org/files/ENCFF987TFU/@@download/ENCFF987TFU.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF584EDC bigBed narrowPeak replicated peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF050CXB 2870218 ENCODE Processing Pipeline f31551e2aab49ee95edf847af7368d80 https://www.encodeproject.org/files/ENCFF584EDC/@@download/ENCFF584EDC.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF650FZS bam unfiltered alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJV, ENCFF018NEO, ENCFF623QLF 1532698397 ENCODE Processing Pipeline 98376e45dcdce8b6da03cea959f41339 https://www.encodeproject.org/files/ENCFF650FZS/@@download/ENCFF650FZS.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF956ELT bam unfiltered alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJX, ENCFF015KEE, ENCFF018NEO 1456312470 ENCODE Processing Pipeline 561319f0af867a7d8294eb13a0611793 https://www.encodeproject.org/files/ENCFF956ELT/@@download/ENCFF956ELT.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF562EBE bam alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJV, ENCFF018NEO, ENCFF623QLF 1126616268 ENCODE Processing Pipeline 6dc56e2f784db8c539980ddcb2e54b45 https://www.encodeproject.org/files/ENCFF562EBE/@@download/ENCFF562EBE.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF158KCF bam alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJX, ENCFF015KEE, ENCFF018NEO 1100627279 ENCODE Processing Pipeline 925772e67cf89e62400733bead4961d7 https://www.encodeproject.org/files/ENCFF158KCF/@@download/ENCFF158KCF.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF013EUZ bed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF158KCF, ENCFF304BRA 1693649 ENCODE Processing Pipeline b08c55c5157b0d3d03ad3d2efaaaf44b https://www.encodeproject.org/files/ENCFF013EUZ/@@download/ENCFF013EUZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF972MEE bigBed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF013EUZ 3614926 ENCODE Processing Pipeline 33cf2cdc7d560397bf7befc5ee12e880 https://www.encodeproject.org/files/ENCFF972MEE/@@download/ENCFF972MEE.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF904MZP bigWig signal p-value ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF158KCF, ENCFF304BRA 354061925 ENCODE Processing Pipeline 41580ff697a8f2595097ef05a8a13e49 https://www.encodeproject.org/files/ENCFF904MZP/@@download/ENCFF904MZP.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF392RKL bigWig fold change over control ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF158KCF, ENCFF304BRA 395641894 ENCODE Processing Pipeline e2a1c86862f52306b0d48a35475c7784 https://www.encodeproject.org/files/ENCFF392RKL/@@download/ENCFF392RKL.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF863WUR bed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF562EBE 1651666 ENCODE Processing Pipeline 8c63b54b6d59954ca32bf31855e2cd06 https://www.encodeproject.org/files/ENCFF863WUR/@@download/ENCFF863WUR.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF819RED bed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158KCF, ENCFF255MPO, ENCFF304BRA, ENCFF562EBE 2090037 ENCODE Processing Pipeline 948f7c19aa65e24133692efec5ebd535 https://www.encodeproject.org/files/ENCFF819RED/@@download/ENCFF819RED.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF548OXY bigBed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF863WUR 3768585 ENCODE Processing Pipeline ca623dc8f2d51cdbbc8b33f37152c87d https://www.encodeproject.org/files/ENCFF548OXY/@@download/ENCFF548OXY.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF730ZVD bigBed narrowPeak peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF819RED 4486877 ENCODE Processing Pipeline 90355b1a8e6215f6d45042a1768efdbb https://www.encodeproject.org/files/ENCFF730ZVD/@@download/ENCFF730ZVD.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF892UMQ bigWig signal p-value ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF562EBE 493361713 ENCODE Processing Pipeline 6005ab9f078ccf01222c2e4bfc7f14eb https://www.encodeproject.org/files/ENCFF892UMQ/@@download/ENCFF892UMQ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF565CWG bigWig signal p-value ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158KCF, ENCFF255MPO, ENCFF304BRA, ENCFF562EBE 725556311 ENCODE Processing Pipeline 13c605763244e239c859f5a40acaf5e1 https://www.encodeproject.org/files/ENCFF565CWG/@@download/ENCFF565CWG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF602ORY bigWig fold change over control ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF562EBE 527687639 ENCODE Processing Pipeline 7fd5fa30e1f58d13568fb4a2e37ad258 https://www.encodeproject.org/files/ENCFF602ORY/@@download/ENCFF602ORY.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF866OFV bigWig fold change over control ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158KCF, ENCFF255MPO, ENCFF304BRA, ENCFF562EBE 837829832 ENCODE Processing Pipeline 846b439f20641bb1eb687ebd28d798bf https://www.encodeproject.org/files/ENCFF866OFV/@@download/ENCFF866OFV.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF607JMZ bigBed narrowPeak replicated peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF199NMT 2717431 ENCODE Processing Pipeline 662fa98158c9dda7ac177528f1476987 https://www.encodeproject.org/files/ENCFF607JMZ/@@download/ENCFF607JMZ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF199NMT bed narrowPeak replicated peaks ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF013EUZ, ENCFF819RED, ENCFF863WUR 1434031 ENCODE Processing Pipeline debd507b6ec3d14bdaacaad7db49d0fe https://www.encodeproject.org/files/ENCFF199NMT/@@download/ENCFF199NMT.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BWL fastq reads ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1266498541 Bing Ren, UCSD a5a5a6c57dc494c39092730cc298c667 SRA:SRR3653042 https://www.encodeproject.org/files/ENCFF002BWL/@@download/ENCFF002BWL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXZ/ released low read length ENCFF002BWN fastq reads ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1234504711 Bing Ren, UCSD 8913e4a99d9bcc4c9c006e1bad3e102b SRA:SRR3653043 https://www.encodeproject.org/files/ENCFF002BWN/@@download/ENCFF002BWN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXX/ released low read length ENCFF882GNF bam alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWN, ENCFF806TVZ 1059685266 ENCODE Processing Pipeline 74c7ad1cabcd11fbc2943b0b6ab85689 https://www.encodeproject.org/files/ENCFF882GNF/@@download/ENCFF882GNF.bam mm10-minimal archived low read length ENCFF272EKS bam alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWL, ENCFF806TVZ 1039425887 ENCODE Processing Pipeline b1959b298db3952d37ae72f6478f2354 https://www.encodeproject.org/files/ENCFF272EKS/@@download/ENCFF272EKS.bam mm10-minimal archived low read length ENCFF614ZSQ bed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF882GNF 1367190 ENCODE Processing Pipeline a68a4e063d8aa87b5b3ff6277ea02e23 https://www.encodeproject.org/files/ENCFF614ZSQ/@@download/ENCFF614ZSQ.bed.gz mm10-minimal archived low read length ENCFF735YTW bigBed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF325JUS 2675712 ENCODE Processing Pipeline 2f6ee2e942f2ca8364d391061e73ab87 https://www.encodeproject.org/files/ENCFF735YTW/@@download/ENCFF735YTW.bigBed mm10-minimal archived low read length ENCFF420VAC bigWig signal p-value ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF882GNF 434404241 ENCODE Processing Pipeline b2e0bdceb2ef6b99fc4518b3b164a63a https://www.encodeproject.org/files/ENCFF420VAC/@@download/ENCFF420VAC.bigWig mm10-minimal archived low read length ENCFF596DSZ bed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF272EKS, ENCFF527LXR 1304354 ENCODE Processing Pipeline 47313f16b62af8c445d38e0cae9a3e5c https://www.encodeproject.org/files/ENCFF596DSZ/@@download/ENCFF596DSZ.bed.gz mm10-minimal archived low read length ENCFF325JUS bed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF272EKS, ENCFF527LXR, ENCFF882GNF 981380 ENCODE Processing Pipeline 7b2b8260ab1bd6f7f15ba24a41982cd4 https://www.encodeproject.org/files/ENCFF325JUS/@@download/ENCFF325JUS.bed.gz mm10-minimal archived low read length ENCFF098JRP bigBed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF614ZSQ 3725924 ENCODE Processing Pipeline 23079f256ea9b73311c11e5a52c12c83 https://www.encodeproject.org/files/ENCFF098JRP/@@download/ENCFF098JRP.bigBed mm10-minimal archived low read length ENCFF915LCG bigBed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF596DSZ 3632305 ENCODE Processing Pipeline a0061006c871a2a69c2f72e59a60fb9a https://www.encodeproject.org/files/ENCFF915LCG/@@download/ENCFF915LCG.bigBed mm10-minimal archived low read length ENCFF230UTL bigWig signal p-value ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF272EKS, ENCFF527LXR 514872641 ENCODE Processing Pipeline 31152740e205926db47c0a345d6b1859 https://www.encodeproject.org/files/ENCFF230UTL/@@download/ENCFF230UTL.bigWig mm10-minimal archived low read length ENCFF846IGR bigWig fold change over control ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF882GNF 457607865 ENCODE Processing Pipeline 14f44689be28f13c63f35bf12b2e7ffb https://www.encodeproject.org/files/ENCFF846IGR/@@download/ENCFF846IGR.bigWig mm10-minimal archived low read length ENCFF845ICI bigWig signal p-value ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF272EKS, ENCFF527LXR, ENCFF882GNF 500131415 ENCODE Processing Pipeline 294d81c739fae33b5efc2081bf7ab2fd https://www.encodeproject.org/files/ENCFF845ICI/@@download/ENCFF845ICI.bigWig mm10-minimal archived low read length ENCFF316UQC bigWig fold change over control ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF272EKS, ENCFF527LXR 456397042 ENCODE Processing Pipeline c73afb029cb5fc092d001b566036ed49 https://www.encodeproject.org/files/ENCFF316UQC/@@download/ENCFF316UQC.bigWig mm10-minimal archived low read length ENCFF588QQY bigWig fold change over control ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF272EKS, ENCFF527LXR, ENCFF882GNF 725057178 ENCODE Processing Pipeline 81589fa4fb137934f68b0b73a1d47770 https://www.encodeproject.org/files/ENCFF588QQY/@@download/ENCFF588QQY.bigWig mm10-minimal archived low read length ENCFF136ORJ bigBed narrowPeak replicated peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF803MDT 2528650 ENCODE Processing Pipeline 447abce088d0ddb55bbf0f3e0d716c7d https://www.encodeproject.org/files/ENCFF136ORJ/@@download/ENCFF136ORJ.bigBed mm10-minimal archived low read length ENCFF803MDT bed narrowPeak replicated peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF325JUS, ENCFF596DSZ, ENCFF614ZSQ 1221810 ENCODE Processing Pipeline b1c681b1abd9c116c6e32f3fac4ae57e https://www.encodeproject.org/files/ENCFF803MDT/@@download/ENCFF803MDT.bed.gz mm10-minimal archived low read length ENCFF097DVN bam unfiltered alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWL, ENCFF018NEO 1606859204 ENCODE Processing Pipeline 91c196057a563c0fc7bc3b78ef86b541 https://www.encodeproject.org/files/ENCFF097DVN/@@download/ENCFF097DVN.bam mm10 released low read length ENCFF070LSV bam unfiltered alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWN, ENCFF018NEO 1566822453 ENCODE Processing Pipeline fee1598912ae861eb922d286b039cdde https://www.encodeproject.org/files/ENCFF070LSV/@@download/ENCFF070LSV.bam mm10 released low read length ENCFF262IER bam alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWL, ENCFF018NEO 1039171006 ENCODE Processing Pipeline 5fb638c79eb3d9cc6238649e5aadec9a https://www.encodeproject.org/files/ENCFF262IER/@@download/ENCFF262IER.bam mm10 released low read length ENCFF268SBZ bam alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWN, ENCFF018NEO 1059443478 ENCODE Processing Pipeline ae9922d3f22e6cf24d282c5de5198b29 https://www.encodeproject.org/files/ENCFF268SBZ/@@download/ENCFF268SBZ.bam mm10 released low read length ENCFF631XZX bed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF268SBZ, ENCFF426BAZ 1332161 ENCODE Processing Pipeline 49639c1e9875112cc84472d1b07d47bf https://www.encodeproject.org/files/ENCFF631XZX/@@download/ENCFF631XZX.bed.gz mm10 released low read length ENCFF123HMK bed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF262IER, ENCFF426BAZ 1305101 ENCODE Processing Pipeline c168be31575ada881e1ca2bb0d78f194 https://www.encodeproject.org/files/ENCFF123HMK/@@download/ENCFF123HMK.bed.gz mm10 released low read length ENCFF351MZR bed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF262IER, ENCFF268SBZ, ENCFF426BAZ 982158 ENCODE Processing Pipeline e9a916e1cfdee8ae5a9606f5c0681087 https://www.encodeproject.org/files/ENCFF351MZR/@@download/ENCFF351MZR.bed.gz mm10 released low read length ENCFF895FOW bigBed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF123HMK 3634346 ENCODE Processing Pipeline 2d17df9049fdc248c9f69f2e64b3b10a https://www.encodeproject.org/files/ENCFF895FOW/@@download/ENCFF895FOW.bigBed mm10 released low read length ENCFF291TSK bigBed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF631XZX 3636360 ENCODE Processing Pipeline b3379104c64ed6f5250af38e7dfbb7fe https://www.encodeproject.org/files/ENCFF291TSK/@@download/ENCFF291TSK.bigBed mm10 released low read length ENCFF039JRP bigBed narrowPeak peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF351MZR 2677660 ENCODE Processing Pipeline 23286818bc2b1a4ed037819ee2fb7801 https://www.encodeproject.org/files/ENCFF039JRP/@@download/ENCFF039JRP.bigBed mm10 released low read length ENCFF419JSH bigWig signal p-value ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF268SBZ, ENCFF426BAZ 486494497 ENCODE Processing Pipeline ec290ab297605a5bc247a9e11083cb54 https://www.encodeproject.org/files/ENCFF419JSH/@@download/ENCFF419JSH.bigWig mm10 released low read length ENCFF028RXP bigWig signal p-value ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF262IER, ENCFF426BAZ 456555486 ENCODE Processing Pipeline 4b50fae7bd61955d72c61fa74aa08e07 https://www.encodeproject.org/files/ENCFF028RXP/@@download/ENCFF028RXP.bigWig mm10 released low read length ENCFF040UAW bigWig signal p-value ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF262IER, ENCFF268SBZ, ENCFF426BAZ 500131428 ENCODE Processing Pipeline 95ebd6750189f76fb9f9773ffa59d077 https://www.encodeproject.org/files/ENCFF040UAW/@@download/ENCFF040UAW.bigWig mm10 released low read length ENCFF193BAS bigWig fold change over control ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF268SBZ, ENCFF426BAZ 457015267 ENCODE Processing Pipeline 579258dfa8a6a5648323643f8714f3b8 https://www.encodeproject.org/files/ENCFF193BAS/@@download/ENCFF193BAS.bigWig mm10 released low read length ENCFF444GXW bigWig fold change over control ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF262IER, ENCFF426BAZ 457935722 ENCODE Processing Pipeline 51adce389c3cdf0a2cb0fb3dd59fab1c https://www.encodeproject.org/files/ENCFF444GXW/@@download/ENCFF444GXW.bigWig mm10 released low read length ENCFF526VAG bigWig fold change over control ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF262IER, ENCFF268SBZ, ENCFF426BAZ 716489569 ENCODE Processing Pipeline 93b848e05d339e4457ac52e61d91c55a https://www.encodeproject.org/files/ENCFF526VAG/@@download/ENCFF526VAG.bigWig mm10 released low read length ENCFF470UWO bed narrowPeak replicated peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF123HMK, ENCFF351MZR, ENCFF631XZX 1222154 ENCODE Processing Pipeline 3eed111cc2633de35f80e4c42011e022 https://www.encodeproject.org/files/ENCFF470UWO/@@download/ENCFF470UWO.bed.gz mm10 released low read length ENCFF393APD bigBed narrowPeak replicated peaks ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF470UWO 2530903 ENCODE Processing Pipeline 03d62e9f0956185dbb64e081bbe0469b https://www.encodeproject.org/files/ENCFF393APD/@@download/ENCFF393APD.bigBed mm10 released low read length ENCFF317EHD fastq reads ENCSR645ZNG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1741509874 Richard Myers, HAIB 787ecc95712830fec05ddae9cde90359 https://www.encodeproject.org/files/ENCFF317EHD/@@download/ENCFF317EHD.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF695RMA bam unfiltered alignments ENCSR645ZNG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF317EHD 1869135986 ENCODE Processing Pipeline 97897b5705c0542a21e8bd23b58f3cc2 https://www.encodeproject.org/files/ENCFF695RMA/@@download/ENCFF695RMA.bam mm10 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF092ZOE bam alignments ENCSR645ZNG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF317EHD 1414154227 ENCODE Processing Pipeline f01ee73ce1fd0de2b4fa3a2232071463 https://www.encodeproject.org/files/ENCFF092ZOE/@@download/ENCFF092ZOE.bam mm10 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF001NJS bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NKK 443318916 Michael Snyder, Stanford 933af9f32e41b3af676918dc543a771d https://www.encodeproject.org/files/ENCFF001NJS/@@download/ENCFF001NJS.bam mm9 released low read length, inconsistent target of control experiment ENCFF001NJT bigBed narrowPeak peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YII 1852234 Michael Snyder, Stanford f8b426eb61065bc0429f2dd5eb6accca https://www.encodeproject.org/files/ENCFF001NJT/@@download/ENCFF001NJT.bigBed mm9 released low read length, inconsistent target of control experiment ENCFF001NJV bigWig signal ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJS, ENCFF001NJW 360945938 Michael Snyder, Stanford 89e48e9511469d86cbd9303ef7e07869 https://www.encodeproject.org/files/ENCFF001NJV/@@download/ENCFF001NJV.bigWig mm9 released low read length, inconsistent target of control experiment ENCFF001NJW bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NKH 517415073 Michael Snyder, Stanford 3f6e58e2391c8af0bf7bac7ca6940e17 https://www.encodeproject.org/files/ENCFF001NJW/@@download/ENCFF001NJW.bam mm9 released low read length, inconsistent target of control experiment ENCFF001NKH fastq reads ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1275305507 Michael Snyder, Stanford 7e58dbc94286274a3c4a61183bd78ae8 https://www.encodeproject.org/files/ENCFF001NKH/@@download/ENCFF001NKH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment ENCFF001NKK fastq reads ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1656020766 Michael Snyder, Stanford 21303612cab8d0ba76199b7f28ac5ebb https://www.encodeproject.org/files/ENCFF001NKK/@@download/ENCFF001NKK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment ENCFF001YII bed narrowPeak peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJS, ENCFF001NJW 767734 Michael Snyder, Stanford 721e2a69fd92687b0b63f81cdc8b1fe9 https://www.encodeproject.org/files/ENCFF001YII/@@download/ENCFF001YII.bed.gz mm9 released low read length, inconsistent target of control experiment ENCFF068SKN bam unfiltered alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKH, ENCFF018NEO 1483651102 ENCODE Processing Pipeline a3c5b0874139cc452d238c97de49c705 https://www.encodeproject.org/files/ENCFF068SKN/@@download/ENCFF068SKN.bam mm10 released low read length, inconsistent target of control experiment ENCFF294BFI bam unfiltered alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKK, ENCFF018NEO 1892470305 ENCODE Processing Pipeline 2baa63c414f3b73461ed9397d5abfc00 https://www.encodeproject.org/files/ENCFF294BFI/@@download/ENCFF294BFI.bam mm10 released low read length, inconsistent target of control experiment ENCFF247SZV bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKK, ENCFF018NEO 1205781081 ENCODE Processing Pipeline b47532b1c7381ba3221be3db444836f7 https://www.encodeproject.org/files/ENCFF247SZV/@@download/ENCFF247SZV.bam mm10 released low read length, inconsistent target of control experiment ENCFF717CZQ bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKH, ENCFF018NEO 977972685 ENCODE Processing Pipeline dac2bd715902766aee0af291e4d30622 https://www.encodeproject.org/files/ENCFF717CZQ/@@download/ENCFF717CZQ.bam mm10 released low read length, inconsistent target of control experiment ENCFF468ABM bigWig signal p-value ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF247SZV, ENCFF339ZWC 235812816 ENCODE Processing Pipeline c3362931318690364169cf309ac3866a https://www.encodeproject.org/files/ENCFF468ABM/@@download/ENCFF468ABM.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF801XTY bigWig signal p-value ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF717CZQ 222875477 ENCODE Processing Pipeline c81ae0c330afacadb4093e0a64c74ee2 https://www.encodeproject.org/files/ENCFF801XTY/@@download/ENCFF801XTY.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF187VUY bigWig signal p-value ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF247SZV, ENCFF339ZWC, ENCFF717CZQ 233080455 ENCODE Processing Pipeline 97abd9ffe74b994683266535fe68e4b8 https://www.encodeproject.org/files/ENCFF187VUY/@@download/ENCFF187VUY.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF209RCH bigWig fold change over control ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF247SZV, ENCFF339ZWC 419287710 ENCODE Processing Pipeline 77a0c864a43360273cb2abed88e1067d https://www.encodeproject.org/files/ENCFF209RCH/@@download/ENCFF209RCH.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF220TVD bigWig fold change over control ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF717CZQ 362277057 ENCODE Processing Pipeline faf544f740be13b865a910f7eec4a460 https://www.encodeproject.org/files/ENCFF220TVD/@@download/ENCFF220TVD.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF140YUU bigWig fold change over control ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF247SZV, ENCFF339ZWC, ENCFF717CZQ 674209254 ENCODE Processing Pipeline 5cf6607bbcc44d0345a75176c27feede https://www.encodeproject.org/files/ENCFF140YUU/@@download/ENCFF140YUU.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF560XGM bed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF247SZV, ENCFF339ZWC 5637942 ENCODE Processing Pipeline 0caca04aab1c9d00fa0b7bd64c514e85 https://www.encodeproject.org/files/ENCFF560XGM/@@download/ENCFF560XGM.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF293RPG bed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF247SZV, ENCFF339ZWC, ENCFF717CZQ 6296226 ENCODE Processing Pipeline 78bee2d282e629d731a8bacb90e07f81 https://www.encodeproject.org/files/ENCFF293RPG/@@download/ENCFF293RPG.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF887HXT bed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF717CZQ 5651473 ENCODE Processing Pipeline a69d1b036d6c26af5fa03dbdedc957cc https://www.encodeproject.org/files/ENCFF887HXT/@@download/ENCFF887HXT.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF090RVD bigBed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF560XGM 12949603 ENCODE Processing Pipeline 910468051fbaecdf6d5d94551189920e https://www.encodeproject.org/files/ENCFF090RVD/@@download/ENCFF090RVD.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF502IRP bigBed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF887HXT 12983481 ENCODE Processing Pipeline 5420128e796688ab9c3b7a7250600541 https://www.encodeproject.org/files/ENCFF502IRP/@@download/ENCFF502IRP.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF003TXQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293RPG 12916621 ENCODE Processing Pipeline e64845bda97229c8c5f9aee844d19ff9 https://www.encodeproject.org/files/ENCFF003TXQ/@@download/ENCFF003TXQ.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF514QFN bed narrowPeak conservative idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293RPG, ENCFF547MET, ENCFF560XGM, ENCFF887HXT 620056 ENCODE Processing Pipeline 3608d791a898c938e1d95928e23758ce https://www.encodeproject.org/files/ENCFF514QFN/@@download/ENCFF514QFN.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF117PYK bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF514QFN 1113673 ENCODE Processing Pipeline e20cb418d20bf5d0b1a8d37a200f05f0 https://www.encodeproject.org/files/ENCFF117PYK/@@download/ENCFF117PYK.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF772DPT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF751UTU 1167967 ENCODE Processing Pipeline 836ecf50f8219ca4675a4f5bf6a11370 https://www.encodeproject.org/files/ENCFF772DPT/@@download/ENCFF772DPT.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF751UTU bed narrowPeak optimal idr thresholded peaks ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293RPG, ENCFF547MET, ENCFF560XGM, ENCFF887HXT 656135 ENCODE Processing Pipeline b13da342359a3858d46027fd5e9fb4f4 https://www.encodeproject.org/files/ENCFF751UTU/@@download/ENCFF751UTU.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF833RGU fastq reads ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1477476471 Bing Ren, UCSD 7239416e130cd931e67b9a7d14dde126 SRA:SRR3651494 https://www.encodeproject.org/files/ENCFF833RGU/@@download/ENCFF833RGU.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released mild to moderate bottlenecking ENCFF716OXJ fastq reads ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1612861850 Bing Ren, UCSD b3c14209c8d51d0bbf8b9516fd07fb6c SRA:SRR3651493 https://www.encodeproject.org/files/ENCFF716OXJ/@@download/ENCFF716OXJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released mild to moderate bottlenecking ENCFF523JDK bam alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF833RGU 1394982829 ENCODE Processing Pipeline 38bae5a325e83c7591d5481b4e9a63d2 https://www.encodeproject.org/files/ENCFF523JDK/@@download/ENCFF523JDK.bam mm10-minimal archived mild to moderate bottlenecking ENCFF950LXL bam alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF716OXJ, ENCFF806TVZ 1470605881 ENCODE Processing Pipeline e2bd396d93c4707ad29a7b8d97083276 https://www.encodeproject.org/files/ENCFF950LXL/@@download/ENCFF950LXL.bam mm10-minimal archived mild to moderate bottlenecking ENCFF737INZ bed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF523JDK 1292799 ENCODE Processing Pipeline ffb1f245805f47054b905124f7305de6 https://www.encodeproject.org/files/ENCFF737INZ/@@download/ENCFF737INZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF179YMH bigBed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF261SHD 3886864 ENCODE Processing Pipeline 6535b5dc09fab9ccd8c46fd993a99608 https://www.encodeproject.org/files/ENCFF179YMH/@@download/ENCFF179YMH.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF261SHD bed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF950LXL 1483570 ENCODE Processing Pipeline 818732ee7afa851c94f4a7c8cb312f29 https://www.encodeproject.org/files/ENCFF261SHD/@@download/ENCFF261SHD.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF068ZCE bed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF523JDK, ENCFF950LXL 1813142 ENCODE Processing Pipeline a74752c8ed32e527b64eccd9bdf16d1d https://www.encodeproject.org/files/ENCFF068ZCE/@@download/ENCFF068ZCE.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF075ZEJ bigBed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF737INZ 3520887 ENCODE Processing Pipeline a4e831c8c91e49323a072e6bffe57f61 https://www.encodeproject.org/files/ENCFF075ZEJ/@@download/ENCFF075ZEJ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF225WFN bigBed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF068ZCE 4627145 ENCODE Processing Pipeline 16c1b0f0fe3c1551a625a4cadff93f1b https://www.encodeproject.org/files/ENCFF225WFN/@@download/ENCFF225WFN.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF131XQV bigWig signal p-value ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF523JDK 731745312 ENCODE Processing Pipeline 0d8dde84a6f92d044131706148313493 https://www.encodeproject.org/files/ENCFF131XQV/@@download/ENCFF131XQV.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF225VPV bigWig signal p-value ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF950LXL 797826027 ENCODE Processing Pipeline 35420827c210335a0fb9ae0df3a1e3f2 https://www.encodeproject.org/files/ENCFF225VPV/@@download/ENCFF225VPV.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF394WJF bigWig signal p-value ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF523JDK, ENCFF950LXL 1062768474 ENCODE Processing Pipeline 867b04d06bd11bf974af7a03473df05d https://www.encodeproject.org/files/ENCFF394WJF/@@download/ENCFF394WJF.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF798RCD bigWig fold change over control ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF523JDK 729984502 ENCODE Processing Pipeline daded83bc5bf30b71c375cca6cd1c876 https://www.encodeproject.org/files/ENCFF798RCD/@@download/ENCFF798RCD.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF565XXL bigWig fold change over control ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF950LXL 726322340 ENCODE Processing Pipeline 16afdd8b63cf81f97d28b14332e71608 https://www.encodeproject.org/files/ENCFF565XXL/@@download/ENCFF565XXL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF320VNO bigWig fold change over control ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF523JDK, ENCFF950LXL 1379628616 ENCODE Processing Pipeline f06dda8e47dca54db9f67fc79048620f https://www.encodeproject.org/files/ENCFF320VNO/@@download/ENCFF320VNO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF336XAM bigBed narrowPeak replicated peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF613CHY 2450458 ENCODE Processing Pipeline 33513178185cf19446c75f71fdd03f88 https://www.encodeproject.org/files/ENCFF336XAM/@@download/ENCFF336XAM.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF613CHY bed narrowPeak replicated peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF068ZCE, ENCFF261SHD, ENCFF737INZ 1250912 ENCODE Processing Pipeline b3d281442fd3e8598593221f1c7eb65a https://www.encodeproject.org/files/ENCFF613CHY/@@download/ENCFF613CHY.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF449MAD bam unfiltered alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF716OXJ 2111916033 ENCODE Processing Pipeline aa2fa7aed7ec6dacb93d6ba8d4757004 https://www.encodeproject.org/files/ENCFF449MAD/@@download/ENCFF449MAD.bam mm10 released mild to moderate bottlenecking ENCFF701AST bam unfiltered alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF833RGU 1982631580 ENCODE Processing Pipeline 86286fcbb232760c8f84afed91bbb2c2 https://www.encodeproject.org/files/ENCFF701AST/@@download/ENCFF701AST.bam mm10 released mild to moderate bottlenecking ENCFF322QGS bam alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF716OXJ 1470320631 ENCODE Processing Pipeline fa15b7ba10eab071471bf736ceb3f4db https://www.encodeproject.org/files/ENCFF322QGS/@@download/ENCFF322QGS.bam mm10 released mild to moderate bottlenecking ENCFF524ZFV bam alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF833RGU 1394683955 ENCODE Processing Pipeline fde900ebfeb469005f32ed7f325a1bac https://www.encodeproject.org/files/ENCFF524ZFV/@@download/ENCFF524ZFV.bam mm10 released mild to moderate bottlenecking ENCFF385EBK bed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF322QGS, ENCFF438RYK 1483865 ENCODE Processing Pipeline 18cfc20d464534aea6161251e3ecc99d https://www.encodeproject.org/files/ENCFF385EBK/@@download/ENCFF385EBK.bed.gz mm10 released mild to moderate bottlenecking ENCFF538RYO bed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF322QGS, ENCFF438RYK, ENCFF524ZFV, ENCFF865QGZ 1801960 ENCODE Processing Pipeline 9e9892303f25345482085e29f41e679d https://www.encodeproject.org/files/ENCFF538RYO/@@download/ENCFF538RYO.bed.gz mm10 released mild to moderate bottlenecking ENCFF911PKJ bed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF524ZFV, ENCFF865QGZ 1286938 ENCODE Processing Pipeline f5ca377be81f15e9d83412d195919aeb https://www.encodeproject.org/files/ENCFF911PKJ/@@download/ENCFF911PKJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF788JUS bigBed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF911PKJ 3506276 ENCODE Processing Pipeline 714e5baec9739a924a85671c29c61f3d https://www.encodeproject.org/files/ENCFF788JUS/@@download/ENCFF788JUS.bigBed mm10 released mild to moderate bottlenecking ENCFF854CNB bigBed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF538RYO 4600085 ENCODE Processing Pipeline 65a03d5c9920a70bd8327ef3c3784d07 https://www.encodeproject.org/files/ENCFF854CNB/@@download/ENCFF854CNB.bigBed mm10 released mild to moderate bottlenecking ENCFF336GVK bigBed narrowPeak peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF385EBK 3887058 ENCODE Processing Pipeline 6ca48f90866914a479fb3c3e70dacedd https://www.encodeproject.org/files/ENCFF336GVK/@@download/ENCFF336GVK.bigBed mm10 released mild to moderate bottlenecking ENCFF629ABG bigWig signal p-value ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF524ZFV, ENCFF865QGZ 787892489 ENCODE Processing Pipeline 393c9d4fe3849c8eb1822ce3da80a850 https://www.encodeproject.org/files/ENCFF629ABG/@@download/ENCFF629ABG.bigWig mm10 released mild to moderate bottlenecking ENCFF971XQS bigWig signal p-value ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF322QGS, ENCFF438RYK 622511200 ENCODE Processing Pipeline 74bdb0e640099bee8a81fd2969dbacc3 https://www.encodeproject.org/files/ENCFF971XQS/@@download/ENCFF971XQS.bigWig mm10 released mild to moderate bottlenecking ENCFF199YZV bigWig signal p-value ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF322QGS, ENCFF438RYK, ENCFF524ZFV, ENCFF865QGZ 1266511748 ENCODE Processing Pipeline e61e089571f433473f4ab3e402def130 https://www.encodeproject.org/files/ENCFF199YZV/@@download/ENCFF199YZV.bigWig mm10 released mild to moderate bottlenecking ENCFF520NRH bigWig fold change over control ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF524ZFV, ENCFF865QGZ 730847695 ENCODE Processing Pipeline 7605435f3080e4ed638c08daca933173 https://www.encodeproject.org/files/ENCFF520NRH/@@download/ENCFF520NRH.bigWig mm10 released mild to moderate bottlenecking ENCFF482SRB bigWig fold change over control ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF322QGS, ENCFF438RYK 727566754 ENCODE Processing Pipeline 3267d75be8bd5e98c52e4d26042dff81 https://www.encodeproject.org/files/ENCFF482SRB/@@download/ENCFF482SRB.bigWig mm10 released mild to moderate bottlenecking ENCFF285ZJD bigWig fold change over control ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF322QGS, ENCFF438RYK, ENCFF524ZFV, ENCFF865QGZ 1396101839 ENCODE Processing Pipeline e4d5357f635a61aaf0198aa0e9d198c0 https://www.encodeproject.org/files/ENCFF285ZJD/@@download/ENCFF285ZJD.bigWig mm10 released mild to moderate bottlenecking ENCFF974RAJ bed narrowPeak replicated peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF385EBK, ENCFF538RYO, ENCFF911PKJ 1247318 ENCODE Processing Pipeline aa497469bb714c41c0df2d7cac18f776 https://www.encodeproject.org/files/ENCFF974RAJ/@@download/ENCFF974RAJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF983MUV bigBed narrowPeak replicated peaks ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF974RAJ 2438727 ENCODE Processing Pipeline eb4233f7d3b93f048615e6c6bf8b65d8 https://www.encodeproject.org/files/ENCFF983MUV/@@download/ENCFF983MUV.bigBed mm10 released mild to moderate bottlenecking ENCFF001LKM bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LKY 349941465 Bing Ren, UCSD c1927aa703895c6619ca26a730eaffca https://www.encodeproject.org/files/ENCFF001LKM/@@download/ENCFF001LKM.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKN bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLE 645891722 Bing Ren, UCSD 00a2ee9167921689ea9d56f9bf8b1bb6 https://www.encodeproject.org/files/ENCFF001LKN/@@download/ENCFF001LKN.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKO bigBed broadPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAI 918749 Bing Ren, UCSD 964c3c8f0d1b3c888a6b9c4033ebac73 https://www.encodeproject.org/files/ENCFF001LKO/@@download/ENCFF001LKO.bigBed mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKR bigWig signal ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKM, ENCFF001LKN 46909819 Bing Ren, UCSD dbbe30ad122a818b301eebd7edc1f452 https://www.encodeproject.org/files/ENCFF001LKR/@@download/ENCFF001LKR.bigWig mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF001LKY fastq reads ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 33 single-ended 681016013 Bing Ren, UCSD 2780f6fda36487aa0346e577ded037c3 https://www.encodeproject.org/files/ENCFF001LKY/@@download/ENCFF001LKY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKE/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, inconsistent control read length, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF001LLE fastq reads ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 787401900 Bing Ren, UCSD 31830bc0a816bba4b559f047f8207dfc https://www.encodeproject.org/files/ENCFF001LLE/@@download/ENCFF001LLE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKF/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF001YAI bed broadPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKM, ENCFF001LKN 589029 Bing Ren, UCSD e90ca04036424133c8ade4741a5e9b54 https://www.encodeproject.org/files/ENCFF001YAI/@@download/ENCFF001YAI.bed.gz mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF488MEI bam unfiltered alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 822804368 ENCODE Processing Pipeline b9dadc392ddbc5a70bdda7ecfe1a6b69 https://www.encodeproject.org/files/ENCFF488MEI/@@download/ENCFF488MEI.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF897RYO bam unfiltered alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 742297582 ENCODE Processing Pipeline b290b04c7471fa0af9dae88058dcf75d https://www.encodeproject.org/files/ENCFF897RYO/@@download/ENCFF897RYO.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF265AMZ bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 332320622 ENCODE Processing Pipeline 573fbb302715f284b0e2d4c90d6dbf0f https://www.encodeproject.org/files/ENCFF265AMZ/@@download/ENCFF265AMZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF147QPL bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 463563626 ENCODE Processing Pipeline 046232a0d2bb8b0ec357f41292d6ed1b https://www.encodeproject.org/files/ENCFF147QPL/@@download/ENCFF147QPL.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF237XJD bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 305387202 ENCODE Processing Pipeline f14a3cff2b0f579a1337b328a1f6c458 https://www.encodeproject.org/files/ENCFF237XJD/@@download/ENCFF237XJD.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF571CYW bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 309059831 ENCODE Processing Pipeline 0ee7e8101253f3d4cf7946535d03c100 https://www.encodeproject.org/files/ENCFF571CYW/@@download/ENCFF571CYW.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF594EHQ bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 357709128 ENCODE Processing Pipeline 4a0fe10a4a2daa9631df2cbfa37f2e1d https://www.encodeproject.org/files/ENCFF594EHQ/@@download/ENCFF594EHQ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF821ICZ bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 158633568 ENCODE Processing Pipeline 8267f2556b744cda1e176762ebc17cf2 https://www.encodeproject.org/files/ENCFF821ICZ/@@download/ENCFF821ICZ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF420ODU bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 199127750 ENCODE Processing Pipeline ffce56162a7df89beb3b717fe72e2895 https://www.encodeproject.org/files/ENCFF420ODU/@@download/ENCFF420ODU.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF147CTE bigBed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF258WBW 10962749 ENCODE Processing Pipeline 691a5662409e1f8360f5505128c7a580 https://www.encodeproject.org/files/ENCFF147CTE/@@download/ENCFF147CTE.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF601AJL bed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 2412924 ENCODE Processing Pipeline fc9ffa51e188fb3b29a5c04ebe810bc8 https://www.encodeproject.org/files/ENCFF601AJL/@@download/ENCFF601AJL.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF164ZFD bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 299092611 ENCODE Processing Pipeline d478cedd0ff94a0b1de2e5626bc3368b https://www.encodeproject.org/files/ENCFF164ZFD/@@download/ENCFF164ZFD.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF523FYC bed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 3684197 ENCODE Processing Pipeline 0e2bd34bc23be09a7e83cfe9036dac48 https://www.encodeproject.org/files/ENCFF523FYC/@@download/ENCFF523FYC.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF311HPG bed narrowPeak optimal idr thresholded peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF258WBW, ENCFF523FYC, ENCFF547MET, ENCFF601AJL 606640 ENCODE Processing Pipeline e69e7c9495ae7b1486a52239b52c3afb https://www.encodeproject.org/files/ENCFF311HPG/@@download/ENCFF311HPG.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF946DCA bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF311HPG 1124752 ENCODE Processing Pipeline b4175532568a28000c4a555e4b03e3dc https://www.encodeproject.org/files/ENCFF946DCA/@@download/ENCFF946DCA.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF258WBW bed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 4998506 ENCODE Processing Pipeline 3c86a12c855637771baf4d56d3515b22 https://www.encodeproject.org/files/ENCFF258WBW/@@download/ENCFF258WBW.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF081LJA bigBed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF601AJL 5771973 ENCODE Processing Pipeline cb0cef1ccfe42403896b72210ffaeb91 https://www.encodeproject.org/files/ENCFF081LJA/@@download/ENCFF081LJA.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF106JNO bigBed narrowPeak peaks and background as input for IDR ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF523FYC 8397724 ENCODE Processing Pipeline fac62a83c59b48d1dc93eaeaa7fcfcfe https://www.encodeproject.org/files/ENCFF106JNO/@@download/ENCFF106JNO.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF002AIV fastq reads ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1436339454 Bing Ren, UCSD cd40221bf69b8860c6cb8ad1ab809cdb SRA:SRR3651963 https://www.encodeproject.org/files/ENCFF002AIV/@@download/ENCFF002AIV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQY/ released low read length, mixed read lengths insufficient read depth ENCFF002AIW fastq reads ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1542158535 Bing Ren, UCSD 7828874f3794cdb2de936e2a11db34b6 SRA:SRR3651962 https://www.encodeproject.org/files/ENCFF002AIW/@@download/ENCFF002AIW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARA/ released low read length, inconsistent control read length, mixed read lengths insufficient read depth ENCFF167XDG bam alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIW, ENCFF806TVZ 1155053433 ENCODE Processing Pipeline cca436e11344f8c6207ca85fdab942e2 https://www.encodeproject.org/files/ENCFF167XDG/@@download/ENCFF167XDG.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF841HPK bam alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIV, ENCFF806TVZ 1117019699 ENCODE Processing Pipeline 361424e479367c41e908801352c3e2fc https://www.encodeproject.org/files/ENCFF841HPK/@@download/ENCFF841HPK.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF299BSH bigBed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF522BGU 3550288 ENCODE Processing Pipeline 3b57b63d491baae67cb31a35737aae3c https://www.encodeproject.org/files/ENCFF299BSH/@@download/ENCFF299BSH.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF998ICL bed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF167XDG, ENCFF175WRM, ENCFF184XIW 2492171 ENCODE Processing Pipeline 69bdc2ec10a7a7b53d87ea3d4a6ab22c https://www.encodeproject.org/files/ENCFF998ICL/@@download/ENCFF998ICL.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF433NKT bigWig signal p-value ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF841HPK 461001785 ENCODE Processing Pipeline 6fe2800bed34f2f451341b68b5b0d76f https://www.encodeproject.org/files/ENCFF433NKT/@@download/ENCFF433NKT.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF522BGU bed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF841HPK 1972392 ENCODE Processing Pipeline f199bbb6071954599dc99c2704b8e327 https://www.encodeproject.org/files/ENCFF522BGU/@@download/ENCFF522BGU.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF693JNR bigBed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF998ICL 4324394 ENCODE Processing Pipeline 6d1e48f4f75df4a1216a47bb37e8b724 https://www.encodeproject.org/files/ENCFF693JNR/@@download/ENCFF693JNR.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF345PAM bigBed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF515ORU 6147595 ENCODE Processing Pipeline 97cef54b0522276ad7c1034a2108138c https://www.encodeproject.org/files/ENCFF345PAM/@@download/ENCFF345PAM.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF515ORU bed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167XDG, ENCFF175WRM, ENCFF184XIW, ENCFF841HPK 2810470 ENCODE Processing Pipeline 622e424334818ce3146402091363932f https://www.encodeproject.org/files/ENCFF515ORU/@@download/ENCFF515ORU.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF870FHP bigWig signal p-value ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF167XDG, ENCFF175WRM, ENCFF184XIW 496028402 ENCODE Processing Pipeline 81d0f4b75a66825107824f3b63b0823e https://www.encodeproject.org/files/ENCFF870FHP/@@download/ENCFF870FHP.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF534WIT bigWig signal p-value ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167XDG, ENCFF175WRM, ENCFF184XIW, ENCFF841HPK 815766435 ENCODE Processing Pipeline 6d9bb397a1eb7e82d82c6bd19b597bc4 https://www.encodeproject.org/files/ENCFF534WIT/@@download/ENCFF534WIT.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF857PFM bigWig fold change over control ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF841HPK 482843809 ENCODE Processing Pipeline 8d09dbca47cbe2232bee6f586235d062 https://www.encodeproject.org/files/ENCFF857PFM/@@download/ENCFF857PFM.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF801RYT bigWig fold change over control ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF167XDG, ENCFF175WRM, ENCFF184XIW 561462176 ENCODE Processing Pipeline 2ae25c7eeeadb7cfa6744822f73bcb99 https://www.encodeproject.org/files/ENCFF801RYT/@@download/ENCFF801RYT.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF596CWS bed narrowPeak replicated peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF515ORU, ENCFF522BGU, ENCFF998ICL 1582094 ENCODE Processing Pipeline 1b5b5cb08469a0e33f77b5ec7166b18a https://www.encodeproject.org/files/ENCFF596CWS/@@download/ENCFF596CWS.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF131ACY bigWig fold change over control ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167XDG, ENCFF175WRM, ENCFF184XIW, ENCFF841HPK 811960714 ENCODE Processing Pipeline 9ed0679b27a9ed8a0d3698b3b75f3cdb https://www.encodeproject.org/files/ENCFF131ACY/@@download/ENCFF131ACY.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF216CAP bigBed narrowPeak replicated peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF596CWS 3110461 ENCODE Processing Pipeline 5c3cfa649d5484b59c6d5ca3a0cc2567 https://www.encodeproject.org/files/ENCFF216CAP/@@download/ENCFF216CAP.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth ENCFF783VUB bam unfiltered alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIW, ENCFF018NEO 1760305820 ENCODE Processing Pipeline 722f0edc5a18777b1f1030ba00ab2ba1 https://www.encodeproject.org/files/ENCFF783VUB/@@download/ENCFF783VUB.bam mm10 released low read length, mixed read lengths insufficient read depth ENCFF845FZZ bam unfiltered alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIV, ENCFF018NEO 1291525642 ENCODE Processing Pipeline 2d15b59bc14ca84435078c7f1ff2057f https://www.encodeproject.org/files/ENCFF845FZZ/@@download/ENCFF845FZZ.bam mm10 released low read length, mixed read lengths insufficient read depth ENCFF267VFW bam alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIV, ENCFF018NEO 862472007 ENCODE Processing Pipeline 36d032e0e1522229b550c46fdeca4ece https://www.encodeproject.org/files/ENCFF267VFW/@@download/ENCFF267VFW.bam mm10 released low read length, mixed read lengths insufficient read depth ENCFF711MOH bam alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIW, ENCFF018NEO 1154749869 ENCODE Processing Pipeline 753d2942a205c45b6e5872199da6dae8 https://www.encodeproject.org/files/ENCFF711MOH/@@download/ENCFF711MOH.bam mm10 released low read length, mixed read lengths insufficient read depth ENCFF954TWY bed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF267VFW, ENCFF523XKB 1977490 ENCODE Processing Pipeline 1bae2ee938288789b1c1549097c69af2 https://www.encodeproject.org/files/ENCFF954TWY/@@download/ENCFF954TWY.bed.gz mm10 released low read length, mixed read lengths insufficient read depth ENCFF820BDM bed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF711MOH 2499193 ENCODE Processing Pipeline c3aa14c59f2de1ec31cbe58df422de3f https://www.encodeproject.org/files/ENCFF820BDM/@@download/ENCFF820BDM.bed.gz mm10 released low read length, mixed read lengths insufficient read depth ENCFF506UHQ bed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF267VFW, ENCFF523XKB, ENCFF711MOH 3107927 ENCODE Processing Pipeline 12d6095560106379e4bd1a6784df211f https://www.encodeproject.org/files/ENCFF506UHQ/@@download/ENCFF506UHQ.bed.gz mm10 released low read length, mixed read lengths insufficient read depth ENCFF735EMM bigBed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF954TWY 3603899 ENCODE Processing Pipeline 4975c5327c47dc054d6b183dd45ad94a https://www.encodeproject.org/files/ENCFF735EMM/@@download/ENCFF735EMM.bigBed mm10 released low read length, mixed read lengths insufficient read depth ENCFF663ZGN bigBed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF820BDM 4399510 ENCODE Processing Pipeline c91d55445fccc5f5e613be8499f30e1d https://www.encodeproject.org/files/ENCFF663ZGN/@@download/ENCFF663ZGN.bigBed mm10 released low read length, mixed read lengths insufficient read depth ENCFF159NUU bigBed narrowPeak peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF506UHQ 6930840 ENCODE Processing Pipeline 62db9a8b2c3392159eb29d079e267a50 https://www.encodeproject.org/files/ENCFF159NUU/@@download/ENCFF159NUU.bigBed mm10 released low read length, mixed read lengths insufficient read depth ENCFF460WGA bigWig signal p-value ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF267VFW, ENCFF523XKB 500786153 ENCODE Processing Pipeline 568b2ec7edb96249202b80cf68477752 https://www.encodeproject.org/files/ENCFF460WGA/@@download/ENCFF460WGA.bigWig mm10 released low read length, mixed read lengths insufficient read depth ENCFF273EKX bigWig signal p-value ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF711MOH 516379898 ENCODE Processing Pipeline 09757b19ebb4e7a19936fc7890540968 https://www.encodeproject.org/files/ENCFF273EKX/@@download/ENCFF273EKX.bigWig mm10 released low read length, mixed read lengths insufficient read depth ENCFF147HVT bigWig signal p-value ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF267VFW, ENCFF523XKB, ENCFF711MOH 853653339 ENCODE Processing Pipeline a7a6de345be4774307b75119c489a326 https://www.encodeproject.org/files/ENCFF147HVT/@@download/ENCFF147HVT.bigWig mm10 released low read length, mixed read lengths insufficient read depth ENCFF103TPF bigWig fold change over control ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF267VFW, ENCFF523XKB 511064786 ENCODE Processing Pipeline d5e7b8db6dfc64cfcf0df95fe2176141 https://www.encodeproject.org/files/ENCFF103TPF/@@download/ENCFF103TPF.bigWig mm10 released low read length, mixed read lengths insufficient read depth ENCFF517YJB bigWig fold change over control ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF711MOH 575996801 ENCODE Processing Pipeline 6faacc7a5dbefb76af03b7e16b7620ea https://www.encodeproject.org/files/ENCFF517YJB/@@download/ENCFF517YJB.bigWig mm10 released low read length, mixed read lengths insufficient read depth ENCFF363RRH bigWig fold change over control ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF267VFW, ENCFF523XKB, ENCFF711MOH 884076004 ENCODE Processing Pipeline cc703d9cc31d7129db87ae07691161ac https://www.encodeproject.org/files/ENCFF363RRH/@@download/ENCFF363RRH.bigWig mm10 released low read length, mixed read lengths insufficient read depth ENCFF533FJP bed narrowPeak replicated peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF506UHQ, ENCFF820BDM, ENCFF954TWY 1691199 ENCODE Processing Pipeline b7b92e6d99fef49e2b23699e0f6f1e58 https://www.encodeproject.org/files/ENCFF533FJP/@@download/ENCFF533FJP.bed.gz mm10 released low read length, mixed read lengths insufficient read depth ENCFF440ZDN bigBed narrowPeak replicated peaks ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF533FJP 3316300 ENCODE Processing Pipeline decff40b6d4022a9aefbc529fc4b1b06 https://www.encodeproject.org/files/ENCFF440ZDN/@@download/ENCFF440ZDN.bigBed mm10 released low read length, mixed read lengths insufficient read depth ENCFF095COJ fastq reads ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2392690535 Bing Ren, UCSD d80acc5bd5f06f94f42d70b36a0fae63 SRA:SRR3652991 https://www.encodeproject.org/files/ENCFF095COJ/@@download/ENCFF095COJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released ENCFF269FRL fastq reads ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2200336069 Bing Ren, UCSD 10215b1b7e2c24bdb25afefbc17bb77d SRA:SRR3652990 https://www.encodeproject.org/files/ENCFF269FRL/@@download/ENCFF269FRL.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released ENCFF332HXW bam alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF095COJ, ENCFF806TVZ 2145056714 ENCODE Processing Pipeline ae3a119500fc248dd8a5a1f953e66403 https://www.encodeproject.org/files/ENCFF332HXW/@@download/ENCFF332HXW.bam mm10-minimal archived ENCFF717XUD bam alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF269FRL, ENCFF806TVZ 2027658250 ENCODE Processing Pipeline 334fb86e5bfb1b06df99b24f069e5b52 https://www.encodeproject.org/files/ENCFF717XUD/@@download/ENCFF717XUD.bam mm10-minimal archived ENCFF733DCM bed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF332HXW, ENCFF595MDP 2513249 ENCODE Processing Pipeline 1f6de0e918733e4de90410fe9cbbbf0b https://www.encodeproject.org/files/ENCFF733DCM/@@download/ENCFF733DCM.bed.gz mm10-minimal archived ENCFF705RMG bed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF717XUD 2451240 ENCODE Processing Pipeline 74319957c15aa934ccb0037a2bde30cd https://www.encodeproject.org/files/ENCFF705RMG/@@download/ENCFF705RMG.bed.gz mm10-minimal archived ENCFF086YSV bigBed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF576GFC 6147378 ENCODE Processing Pipeline 566ba1e4df884270d7560772edc7a5f0 https://www.encodeproject.org/files/ENCFF086YSV/@@download/ENCFF086YSV.bigBed mm10-minimal archived missing analysis_step_run ENCFF811TCH bigBed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF705RMG 5504622 ENCODE Processing Pipeline d2ae3a2ef104fa701fc7320ddb1d8558 https://www.encodeproject.org/files/ENCFF811TCH/@@download/ENCFF811TCH.bigBed mm10-minimal archived missing analysis_step_run ENCFF576GFC bed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF332HXW, ENCFF595MDP, ENCFF717XUD 2804287 ENCODE Processing Pipeline a8e0ca22f070fecd60c179651841e543 https://www.encodeproject.org/files/ENCFF576GFC/@@download/ENCFF576GFC.bed.gz mm10-minimal archived ENCFF211BRF bigBed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF733DCM 5480248 ENCODE Processing Pipeline 957a6e7907e1d6e33182927ecbbefab6 https://www.encodeproject.org/files/ENCFF211BRF/@@download/ENCFF211BRF.bigBed mm10-minimal archived missing analysis_step_run ENCFF626CFS bigWig signal p-value ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF332HXW, ENCFF595MDP 599577403 ENCODE Processing Pipeline f89a519b05ce5e7240480016cd7fdae6 https://www.encodeproject.org/files/ENCFF626CFS/@@download/ENCFF626CFS.bigWig mm10-minimal archived ENCFF512HLB bigWig signal p-value ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF717XUD 620071707 ENCODE Processing Pipeline bb3302a2b6c451b5ab7b1a0963affbcd https://www.encodeproject.org/files/ENCFF512HLB/@@download/ENCFF512HLB.bigWig mm10-minimal archived ENCFF079PDF bigWig signal p-value ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF332HXW, ENCFF595MDP, ENCFF717XUD 1212031274 ENCODE Processing Pipeline 4e937fb5413476f7157410bd66b55234 https://www.encodeproject.org/files/ENCFF079PDF/@@download/ENCFF079PDF.bigWig mm10-minimal archived ENCFF031SZM bigWig fold change over control ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF332HXW, ENCFF595MDP 841330885 ENCODE Processing Pipeline f5417c725153f475aff8e9a8b78e58c1 https://www.encodeproject.org/files/ENCFF031SZM/@@download/ENCFF031SZM.bigWig mm10-minimal archived ENCFF989AVO bigWig fold change over control ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF717XUD 839901730 ENCODE Processing Pipeline c67a6341bed6a475f6fc4b74b44e70a6 https://www.encodeproject.org/files/ENCFF989AVO/@@download/ENCFF989AVO.bigWig mm10-minimal archived ENCFF762CSE bigWig fold change over control ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF332HXW, ENCFF595MDP, ENCFF717XUD 1572717017 ENCODE Processing Pipeline 1c6b90a3febae0a579edc07517b5f4b6 https://www.encodeproject.org/files/ENCFF762CSE/@@download/ENCFF762CSE.bigWig mm10-minimal archived ENCFF511TRW bigBed narrowPeak replicated peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF756VDX 3766241 ENCODE Processing Pipeline f5016fba181ba4dad11aa1235440b2a1 https://www.encodeproject.org/files/ENCFF511TRW/@@download/ENCFF511TRW.bigBed mm10-minimal archived ENCFF756VDX bed narrowPeak replicated peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF576GFC, ENCFF705RMG, ENCFF733DCM 2141078 ENCODE Processing Pipeline 3219cebe86c960a16371d368e7890928 https://www.encodeproject.org/files/ENCFF756VDX/@@download/ENCFF756VDX.bed.gz mm10-minimal archived missing analysis_step_run ENCFF424PZY bam unfiltered alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF269FRL 2945578075 ENCODE Processing Pipeline 81b8e5a55b596db49f62a9f8ce5694bf https://www.encodeproject.org/files/ENCFF424PZY/@@download/ENCFF424PZY.bam mm10 released ENCFF731GHU bam alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF269FRL 2027142848 ENCODE Processing Pipeline a20ac62852c76736ca29b652204237f1 https://www.encodeproject.org/files/ENCFF731GHU/@@download/ENCFF731GHU.bam mm10 released ENCFF814CQT bam unfiltered alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF095COJ 3162947389 ENCODE Processing Pipeline a6e244d56582d4b630566096ead95e32 https://www.encodeproject.org/files/ENCFF814CQT/@@download/ENCFF814CQT.bam mm10 released ENCFF441SPC bam alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF095COJ 2144580925 ENCODE Processing Pipeline 76f824110bc2b92c117ee8b589c4498b https://www.encodeproject.org/files/ENCFF441SPC/@@download/ENCFF441SPC.bam mm10 released ENCFF429JLR bed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF441SPC, ENCFF548IIV 2721813 ENCODE Processing Pipeline 6aedc73a042442274a0dc6a03039a607 https://www.encodeproject.org/files/ENCFF429JLR/@@download/ENCFF429JLR.bed.gz mm10 released ENCFF538FTK bed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF731GHU, ENCFF781DUP 2442421 ENCODE Processing Pipeline 8e17725b2fc1bbfe633942ea3a645899 https://www.encodeproject.org/files/ENCFF538FTK/@@download/ENCFF538FTK.bed.gz mm10 released ENCFF788LPG bed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF441SPC, ENCFF548IIV, ENCFF731GHU, ENCFF781DUP 2670563 ENCODE Processing Pipeline c1e2010c958309dbb4656c023292acdc https://www.encodeproject.org/files/ENCFF788LPG/@@download/ENCFF788LPG.bed.gz mm10 released ENCFF400QJG bigBed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF429JLR 5976734 ENCODE Processing Pipeline 0475cf22fd17eee0bcb7c6561821dccc https://www.encodeproject.org/files/ENCFF400QJG/@@download/ENCFF400QJG.bigBed mm10 released ENCFF761VNH bigBed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF538FTK 5490388 ENCODE Processing Pipeline 721e75eabe103dc1f3800480078cd496 https://www.encodeproject.org/files/ENCFF761VNH/@@download/ENCFF761VNH.bigBed mm10 released ENCFF384XTR bigBed narrowPeak peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF788LPG 5851261 ENCODE Processing Pipeline c9df22626b5a7b0f65ccc435750faacf https://www.encodeproject.org/files/ENCFF384XTR/@@download/ENCFF384XTR.bigBed mm10 released ENCFF027TKV bigWig signal p-value ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF441SPC, ENCFF548IIV 849319095 ENCODE Processing Pipeline c8fc325da5a637e3cf7d77049e21b1ab https://www.encodeproject.org/files/ENCFF027TKV/@@download/ENCFF027TKV.bigWig mm10 released ENCFF036LTW bigWig signal p-value ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF731GHU, ENCFF781DUP 675575986 ENCODE Processing Pipeline 518e1cdcf30cb201a7d28f882e04df2b https://www.encodeproject.org/files/ENCFF036LTW/@@download/ENCFF036LTW.bigWig mm10 released ENCFF171NNY bigWig signal p-value ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF441SPC, ENCFF548IIV, ENCFF731GHU, ENCFF781DUP 1575515024 ENCODE Processing Pipeline 9a619e754a0cde554db209f00f3cf836 https://www.encodeproject.org/files/ENCFF171NNY/@@download/ENCFF171NNY.bigWig mm10 released ENCFF923JRZ bigWig fold change over control ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF441SPC, ENCFF548IIV 904117655 ENCODE Processing Pipeline 09b2dfe9976e6364308dc32224d94397 https://www.encodeproject.org/files/ENCFF923JRZ/@@download/ENCFF923JRZ.bigWig mm10 released ENCFF902LZT bigWig fold change over control ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF731GHU, ENCFF781DUP 830395574 ENCODE Processing Pipeline fe9baeb348758435decf966b18a80f12 https://www.encodeproject.org/files/ENCFF902LZT/@@download/ENCFF902LZT.bigWig mm10 released ENCFF741GHS bigWig fold change over control ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF441SPC, ENCFF548IIV, ENCFF731GHU, ENCFF781DUP 1575235761 ENCODE Processing Pipeline c0c476b3025575a17e843993488a155b https://www.encodeproject.org/files/ENCFF741GHS/@@download/ENCFF741GHS.bigWig mm10 released ENCFF275FND bed narrowPeak replicated peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF429JLR, ENCFF538FTK, ENCFF788LPG 1978738 ENCODE Processing Pipeline 1938f993a41febe1bfa1c85b5b546739 https://www.encodeproject.org/files/ENCFF275FND/@@download/ENCFF275FND.bed.gz mm10 released ENCFF584ASN bigBed narrowPeak replicated peaks ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF275FND 3463035 ENCODE Processing Pipeline 48a498b05bf943e354afc570d8a2c241 https://www.encodeproject.org/files/ENCFF584ASN/@@download/ENCFF584ASN.bigBed mm10 released ENCFF001NFD bigBed narrowPeak peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHS 1313916 Michael Snyder, Stanford f23fa856a519646ae01f7795c968083c https://www.encodeproject.org/files/ENCFF001NFD/@@download/ENCFF001NFD.bigBed mm9 released low read length, inconsistent target of control experiment ENCFF001NFE bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NFO 563205768 Michael Snyder, Stanford c13aa544c39a290dfbbd1523aaaec444 https://www.encodeproject.org/files/ENCFF001NFE/@@download/ENCFF001NFE.bam mm9 released low read length, inconsistent target of control experiment ENCFF001NFF bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NFP 559460699 Michael Snyder, Stanford f7bf914e461d8319fedc01b7d821f312 https://www.encodeproject.org/files/ENCFF001NFF/@@download/ENCFF001NFF.bam mm9 released low read length, inconsistent target of control experiment ENCFF001NFG bigWig signal ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFE, ENCFF001NFF 381074851 Michael Snyder, Stanford 6631652b75833b1736c48bdbea51cbad https://www.encodeproject.org/files/ENCFF001NFG/@@download/ENCFF001NFG.bigWig mm9 released low read length, inconsistent target of control experiment ENCFF001NFO fastq reads ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1038080396 Michael Snyder, Stanford ab7f5b455febbefc40bf1063881ffbdf https://www.encodeproject.org/files/ENCFF001NFO/@@download/ENCFF001NFO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment ENCFF001NFP fastq reads ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1065392168 Michael Snyder, Stanford e57e20c4b0626c35fde488f4280bd0e2 https://www.encodeproject.org/files/ENCFF001NFP/@@download/ENCFF001NFP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment ENCFF001YHS bed narrowPeak peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFE, ENCFF001NFF 528171 Michael Snyder, Stanford 37a829f443c95f4305a650e9e9f17002 https://www.encodeproject.org/files/ENCFF001YHS/@@download/ENCFF001YHS.bed.gz mm9 released low read length, inconsistent target of control experiment ENCFF692ZEM bam unfiltered alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFO, ENCFF018NEO 1221514350 ENCODE Processing Pipeline 591b77e9e4522cb5fae676f23d96589e https://www.encodeproject.org/files/ENCFF692ZEM/@@download/ENCFF692ZEM.bam mm10 released low read length, inconsistent target of control experiment ENCFF511EZN bam unfiltered alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFP, ENCFF018NEO 1254683878 ENCODE Processing Pipeline c101138c6341f382a200e1aa1a5ffc1d https://www.encodeproject.org/files/ENCFF511EZN/@@download/ENCFF511EZN.bam mm10 released low read length, inconsistent target of control experiment ENCFF604WSX bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFO, ENCFF018NEO 836383482 ENCODE Processing Pipeline b63eb2d07cca445f32af232802b9d6f1 https://www.encodeproject.org/files/ENCFF604WSX/@@download/ENCFF604WSX.bam mm10 released low read length, inconsistent target of control experiment ENCFF344JSI bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFP, ENCFF018NEO 850474686 ENCODE Processing Pipeline 37cd6fececc39eaecf25515f3dfdfdd9 https://www.encodeproject.org/files/ENCFF344JSI/@@download/ENCFF344JSI.bam mm10 released low read length, inconsistent target of control experiment ENCFF168XRD bigWig signal p-value ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF604WSX 216852455 ENCODE Processing Pipeline 668b4d627bde21102145436a74a0d394 https://www.encodeproject.org/files/ENCFF168XRD/@@download/ENCFF168XRD.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF772AEI bigWig fold change over control ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF604WSX 339165633 ENCODE Processing Pipeline ddeb7363c55cac1574a819f411d6acd8 https://www.encodeproject.org/files/ENCFF772AEI/@@download/ENCFF772AEI.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF834CCS bigWig signal p-value ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF344JSI 209651670 ENCODE Processing Pipeline 162ef3c07abc2dc361f55104bc9c01db https://www.encodeproject.org/files/ENCFF834CCS/@@download/ENCFF834CCS.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF901YZD bigWig signal p-value ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF344JSI, ENCFF604WSX 214018040 ENCODE Processing Pipeline 4677992e24a26a4ca51ac56052caa48f https://www.encodeproject.org/files/ENCFF901YZD/@@download/ENCFF901YZD.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF980KPP bigWig fold change over control ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF344JSI 331604382 ENCODE Processing Pipeline 74055bf55b99cef33b2027e79933ec6d https://www.encodeproject.org/files/ENCFF980KPP/@@download/ENCFF980KPP.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF030WPJ bed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF604WSX 5270893 ENCODE Processing Pipeline 18da8464bfc54f451492b0cc2c01d7b9 https://www.encodeproject.org/files/ENCFF030WPJ/@@download/ENCFF030WPJ.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF174LRE bigWig fold change over control ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF344JSI, ENCFF604WSX 582485035 ENCODE Processing Pipeline 695d8e9fb5289e9191db6085715fc114 https://www.encodeproject.org/files/ENCFF174LRE/@@download/ENCFF174LRE.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF433YEA bed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF344JSI 5107233 ENCODE Processing Pipeline 6e4d4a65b68793961babb6dbd0ecdf4a https://www.encodeproject.org/files/ENCFF433YEA/@@download/ENCFF433YEA.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF337BFS bed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF344JSI, ENCFF604WSX 5843610 ENCODE Processing Pipeline 139b77dfb8500ce83c37bf69c340a0cb https://www.encodeproject.org/files/ENCFF337BFS/@@download/ENCFF337BFS.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF155DEQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF030WPJ 12793712 ENCODE Processing Pipeline 8c8f90b766d1cf256fd6ee01f2561922 https://www.encodeproject.org/files/ENCFF155DEQ/@@download/ENCFF155DEQ.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF527JJE bigBed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF433YEA 12710187 ENCODE Processing Pipeline 4eaf42e58659d9a836c811b0dab00115 https://www.encodeproject.org/files/ENCFF527JJE/@@download/ENCFF527JJE.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF519ZKT bigBed narrowPeak peaks and background as input for IDR ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF337BFS 12865579 ENCODE Processing Pipeline b1c55f46d8e0c8939064fe4783aaa0e9 https://www.encodeproject.org/files/ENCFF519ZKT/@@download/ENCFF519ZKT.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF785BWF bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF114ZUG 757025 ENCODE Processing Pipeline f6593a4e2f5c03e87ed8cc4655dcd511 https://www.encodeproject.org/files/ENCFF785BWF/@@download/ENCFF785BWF.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF114ZUG bed narrowPeak conservative idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF030WPJ, ENCFF337BFS, ENCFF433YEA, ENCFF547MET 393259 ENCODE Processing Pipeline a57697e3210d379e2cbbaca42e4b0dac https://www.encodeproject.org/files/ENCFF114ZUG/@@download/ENCFF114ZUG.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF305VBR bed narrowPeak optimal idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF030WPJ, ENCFF337BFS, ENCFF433YEA, ENCFF547MET 404497 ENCODE Processing Pipeline 3a1fe51a2e6f8e6fbbe2204d95d855f0 https://www.encodeproject.org/files/ENCFF305VBR/@@download/ENCFF305VBR.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF403EAW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF305VBR 774312 ENCODE Processing Pipeline b8f4eece13b90e7dcf21f98355303a1f https://www.encodeproject.org/files/ENCFF403EAW/@@download/ENCFF403EAW.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF189MMG fastq reads ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2532308833 Bing Ren, UCSD d6da1d10b534b26ef4c2fd371499b80d SRA:SRR3651988 https://www.encodeproject.org/files/ENCFF189MMG/@@download/ENCFF189MMG.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released mild to moderate bottlenecking ENCFF499UPI fastq reads ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2450453385 Bing Ren, UCSD 2248090ddfaa6a127b83f90c1b0e5b33 SRA:SRR3651987 https://www.encodeproject.org/files/ENCFF499UPI/@@download/ENCFF499UPI.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released mild to moderate bottlenecking ENCFF699POE bam alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF499UPI, ENCFF806TVZ 2366796432 ENCODE Processing Pipeline 73f6af0cd46fa24422364b69231264d7 https://www.encodeproject.org/files/ENCFF699POE/@@download/ENCFF699POE.bam mm10-minimal archived mild to moderate bottlenecking ENCFF716KDJ bam alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF189MMG, ENCFF806TVZ 2483028150 ENCODE Processing Pipeline 3e0f5b248d89d69ce6af6c465dc5f29e https://www.encodeproject.org/files/ENCFF716KDJ/@@download/ENCFF716KDJ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF658WMS bed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF699POE, ENCFF716KDJ, ENCFF986JLW 1135638 ENCODE Processing Pipeline 9e82656ec2f72e0224bf4412c5dd05fd https://www.encodeproject.org/files/ENCFF658WMS/@@download/ENCFF658WMS.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF063JWP bed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF716KDJ 810943 ENCODE Processing Pipeline 412cfb0333a905a0449c8a9b8e9f0db4 https://www.encodeproject.org/files/ENCFF063JWP/@@download/ENCFF063JWP.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF883XTM bigBed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF074CXY 2596871 ENCODE Processing Pipeline fe5a9632f4e57801db17817759bb8bc0 https://www.encodeproject.org/files/ENCFF883XTM/@@download/ENCFF883XTM.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF748ALO bigBed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF063JWP 1773562 ENCODE Processing Pipeline fefc9de39a7bf2f6bc934f6120f0b976 https://www.encodeproject.org/files/ENCFF748ALO/@@download/ENCFF748ALO.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF074CXY bed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF699POE, ENCFF986JLW 1167341 ENCODE Processing Pipeline f71ae8561cff266a7860c61a488e6714 https://www.encodeproject.org/files/ENCFF074CXY/@@download/ENCFF074CXY.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF586KWP bigBed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF658WMS 2399407 ENCODE Processing Pipeline d8b82e00c359768a070b16c2573c4c7a https://www.encodeproject.org/files/ENCFF586KWP/@@download/ENCFF586KWP.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF714TUW bigWig signal p-value ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF699POE, ENCFF986JLW 998352802 ENCODE Processing Pipeline 6dab4113165b581fd4f7ab0a0f1fb311 https://www.encodeproject.org/files/ENCFF714TUW/@@download/ENCFF714TUW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF791OWJ bigWig signal p-value ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF716KDJ 933460334 ENCODE Processing Pipeline 0b6d306162afe927190d26bc0ec741a6 https://www.encodeproject.org/files/ENCFF791OWJ/@@download/ENCFF791OWJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF949ZJN bigWig signal p-value ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF699POE, ENCFF716KDJ, ENCFF986JLW 1571445736 ENCODE Processing Pipeline 2ee59ba5e8bfc5e188b624cbe455e451 https://www.encodeproject.org/files/ENCFF949ZJN/@@download/ENCFF949ZJN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF944ISE bigWig fold change over control ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF699POE, ENCFF986JLW 1145495143 ENCODE Processing Pipeline dafc654cd9edf8c7d14533bd57b6efab https://www.encodeproject.org/files/ENCFF944ISE/@@download/ENCFF944ISE.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF638RJK bigWig fold change over control ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF716KDJ 994323231 ENCODE Processing Pipeline 3269f34c7038674cd30db31d0350b496 https://www.encodeproject.org/files/ENCFF638RJK/@@download/ENCFF638RJK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF536BNV bigWig fold change over control ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF699POE, ENCFF716KDJ, ENCFF986JLW 1689615469 ENCODE Processing Pipeline ed061dde73fc7159e2ae7578c9c6f264 https://www.encodeproject.org/files/ENCFF536BNV/@@download/ENCFF536BNV.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF013KCD bigBed narrowPeak replicated peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF546MZH 1311256 ENCODE Processing Pipeline 7152fb4aa8ec957034bd3a6f6be42ad9 https://www.encodeproject.org/files/ENCFF013KCD/@@download/ENCFF013KCD.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF546MZH bed narrowPeak replicated peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF063JWP, ENCFF074CXY, ENCFF658WMS 576523 ENCODE Processing Pipeline a71018730841f9f630bc4fe8d3ccdb92 https://www.encodeproject.org/files/ENCFF546MZH/@@download/ENCFF546MZH.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF631GMJ bam unfiltered alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF189MMG 3380496119 ENCODE Processing Pipeline e06eb81501017582d2832d80217c76fd https://www.encodeproject.org/files/ENCFF631GMJ/@@download/ENCFF631GMJ.bam mm10 released mild to moderate bottlenecking ENCFF859NXE bam unfiltered alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF499UPI 3273686958 ENCODE Processing Pipeline 8d36fe1498810c8424e9787b31f32e58 https://www.encodeproject.org/files/ENCFF859NXE/@@download/ENCFF859NXE.bam mm10 released mild to moderate bottlenecking ENCFF224PSG bam alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF189MMG 2482514314 ENCODE Processing Pipeline 12f37893a5ffd40d0c85606da70ebfa7 https://www.encodeproject.org/files/ENCFF224PSG/@@download/ENCFF224PSG.bam mm10 released mild to moderate bottlenecking ENCFF492PMM bam alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF499UPI 2366280403 ENCODE Processing Pipeline 772dbeae7ecebc2041f8e35ad504278f https://www.encodeproject.org/files/ENCFF492PMM/@@download/ENCFF492PMM.bam mm10 released mild to moderate bottlenecking ENCFF097MMS bed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF492PMM, ENCFF614XRG, ENCFF970FNZ 1131110 ENCODE Processing Pipeline 829a2cb438ec8ac4bf88e8ad9fa18db9 https://www.encodeproject.org/files/ENCFF097MMS/@@download/ENCFF097MMS.bed.gz mm10 released mild to moderate bottlenecking ENCFF361IUN bed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF224PSG, ENCFF614XRG 762050 ENCODE Processing Pipeline 03e5ed12efc737d728967d4be66e42d7 https://www.encodeproject.org/files/ENCFF361IUN/@@download/ENCFF361IUN.bed.gz mm10 released mild to moderate bottlenecking ENCFF498DNB bed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF224PSG, ENCFF492PMM, ENCFF614XRG, ENCFF970FNZ 1184268 ENCODE Processing Pipeline 85ede67dfbd71eec757edb3cad48ee6b https://www.encodeproject.org/files/ENCFF498DNB/@@download/ENCFF498DNB.bed.gz mm10 released mild to moderate bottlenecking ENCFF736PNN bigBed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF097MMS 2519206 ENCODE Processing Pipeline 56c316d80ab61c953c56dcc3f31c93e3 https://www.encodeproject.org/files/ENCFF736PNN/@@download/ENCFF736PNN.bigBed mm10 released mild to moderate bottlenecking ENCFF965EYG bigBed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF361IUN 1659217 ENCODE Processing Pipeline e6103bc4d66eb1087e8c786c2a41a0a0 https://www.encodeproject.org/files/ENCFF965EYG/@@download/ENCFF965EYG.bigBed mm10 released mild to moderate bottlenecking ENCFF295HXG bigBed narrowPeak peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF498DNB 2484262 ENCODE Processing Pipeline 6c0d47b2920ecc2ebef0d8a0f6379fd2 https://www.encodeproject.org/files/ENCFF295HXG/@@download/ENCFF295HXG.bigBed mm10 released mild to moderate bottlenecking ENCFF637KFO bigWig signal p-value ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF492PMM, ENCFF614XRG, ENCFF970FNZ 980503026 ENCODE Processing Pipeline 6440c04bd3f44f32dffa5d3d07d9b6fd https://www.encodeproject.org/files/ENCFF637KFO/@@download/ENCFF637KFO.bigWig mm10 released mild to moderate bottlenecking ENCFF689LPG bigWig signal p-value ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF224PSG, ENCFF614XRG 895623332 ENCODE Processing Pipeline 5be5ae9d1e4e68b7524fb364a598c31b https://www.encodeproject.org/files/ENCFF689LPG/@@download/ENCFF689LPG.bigWig mm10 released mild to moderate bottlenecking ENCFF694SVW bigWig signal p-value ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF224PSG, ENCFF492PMM, ENCFF614XRG, ENCFF970FNZ 1532181702 ENCODE Processing Pipeline cbdd702d12919a35680ac1c024b6f4ff https://www.encodeproject.org/files/ENCFF694SVW/@@download/ENCFF694SVW.bigWig mm10 released mild to moderate bottlenecking ENCFF816CSO bigWig fold change over control ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF492PMM, ENCFF614XRG, ENCFF970FNZ 1124623486 ENCODE Processing Pipeline ebbdde776a12af9f3f6966722a9712ed https://www.encodeproject.org/files/ENCFF816CSO/@@download/ENCFF816CSO.bigWig mm10 released mild to moderate bottlenecking ENCFF737FAG bigWig fold change over control ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF224PSG, ENCFF614XRG 939713629 ENCODE Processing Pipeline 834459ebb83ad0c905fda2db5c0e747a https://www.encodeproject.org/files/ENCFF737FAG/@@download/ENCFF737FAG.bigWig mm10 released mild to moderate bottlenecking ENCFF901MQW bigWig fold change over control ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF224PSG, ENCFF492PMM, ENCFF614XRG, ENCFF970FNZ 1649678209 ENCODE Processing Pipeline 6ce3b778696307c677d4acf8d6292784 https://www.encodeproject.org/files/ENCFF901MQW/@@download/ENCFF901MQW.bigWig mm10 released mild to moderate bottlenecking ENCFF485MBY bigBed narrowPeak replicated peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF848ZMQ 1397304 ENCODE Processing Pipeline 4667165139081e8338d8034f7851a7bc https://www.encodeproject.org/files/ENCFF485MBY/@@download/ENCFF485MBY.bigBed mm10 released mild to moderate bottlenecking ENCFF848ZMQ bed narrowPeak replicated peaks ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF097MMS, ENCFF361IUN, ENCFF498DNB 613766 ENCODE Processing Pipeline c7332d5f7773e020d11c8fbb7c084c12 https://www.encodeproject.org/files/ENCFF848ZMQ/@@download/ENCFF848ZMQ.bed.gz mm10 released mild to moderate bottlenecking ENCFF203BGZ fastq reads ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2583956159 Bing Ren, UCSD 310dbb138bde5622d1d1dbf4ddff614f SRA:SRR3651618 https://www.encodeproject.org/files/ENCFF203BGZ/@@download/ENCFF203BGZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/, /files/ENCFF961WKK/ released mild to moderate bottlenecking, moderate library complexity ENCFF198YRQ fastq reads ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2317599561 Bing Ren, UCSD 536c1fb50e9497a59915a8c45f788e74 SRA:SRR3651617 https://www.encodeproject.org/files/ENCFF198YRQ/@@download/ENCFF198YRQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released mild to moderate bottlenecking, moderate library complexity ENCFF732IVQ bam alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF203BGZ, ENCFF806TVZ 2041980912 ENCODE Processing Pipeline ed686acb67e4616b8b7dfdbd15824369 https://www.encodeproject.org/files/ENCFF732IVQ/@@download/ENCFF732IVQ.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF700DHB bam alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF198YRQ, ENCFF806TVZ 2130016736 ENCODE Processing Pipeline cea1570e3722cdf4fa6972348919619d https://www.encodeproject.org/files/ENCFF700DHB/@@download/ENCFF700DHB.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF135TET bed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF700DHB 2431379 ENCODE Processing Pipeline 4441455c06918877b549f9040f2804b8 https://www.encodeproject.org/files/ENCFF135TET/@@download/ENCFF135TET.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF915BCR bed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF732IVQ 2040264 ENCODE Processing Pipeline 7443d6851400123f8efbaab8e046f1d6 https://www.encodeproject.org/files/ENCFF915BCR/@@download/ENCFF915BCR.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF210PSF bed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF700DHB, ENCFF732IVQ 3375015 ENCODE Processing Pipeline ce7bc5d59945e3a6e20e1c1710ef50af https://www.encodeproject.org/files/ENCFF210PSF/@@download/ENCFF210PSF.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF809USM bigBed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF915BCR 4225505 ENCODE Processing Pipeline 3537849a216f4ee4dbae915cb1e20662 https://www.encodeproject.org/files/ENCFF809USM/@@download/ENCFF809USM.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF163TPH bigBed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF135TET 4824501 ENCODE Processing Pipeline b65fa73641dc9ba260f539b0f9aee405 https://www.encodeproject.org/files/ENCFF163TPH/@@download/ENCFF163TPH.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF832AWH bigBed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF210PSF 6543008 ENCODE Processing Pipeline 530160ec76c3f13216ef524143ea182b https://www.encodeproject.org/files/ENCFF832AWH/@@download/ENCFF832AWH.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF053RMI bigWig signal p-value ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF732IVQ 791000659 ENCODE Processing Pipeline 2865332b79b91869b0a8db1313ecfdf9 https://www.encodeproject.org/files/ENCFF053RMI/@@download/ENCFF053RMI.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF697ZHD bigWig signal p-value ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF700DHB 807782866 ENCODE Processing Pipeline 4623dc85bf8dc501fd590c10d0d16a28 https://www.encodeproject.org/files/ENCFF697ZHD/@@download/ENCFF697ZHD.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF057GFL bigWig signal p-value ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF700DHB, ENCFF732IVQ 1212481060 ENCODE Processing Pipeline 28e743b539b01ac900fb7a82070aff1a https://www.encodeproject.org/files/ENCFF057GFL/@@download/ENCFF057GFL.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF796BVH bigWig fold change over control ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF732IVQ 820672002 ENCODE Processing Pipeline e01af2bc9328b036d7523187b8ac743a https://www.encodeproject.org/files/ENCFF796BVH/@@download/ENCFF796BVH.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF405CVV bigWig fold change over control ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF700DHB 1038390618 ENCODE Processing Pipeline 1e723ff713f5fe207a88bb9b02f4ce9c https://www.encodeproject.org/files/ENCFF405CVV/@@download/ENCFF405CVV.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF058XOB bigWig fold change over control ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF700DHB, ENCFF732IVQ 1553102893 ENCODE Processing Pipeline 43f0c181fa00825ed87734997d6e321f https://www.encodeproject.org/files/ENCFF058XOB/@@download/ENCFF058XOB.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF407NPL bed narrowPeak replicated peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF135TET, ENCFF210PSF, ENCFF915BCR 1494249 ENCODE Processing Pipeline 0c67cda3d1addc852b262d67eb91f109 https://www.encodeproject.org/files/ENCFF407NPL/@@download/ENCFF407NPL.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF875BBT bigBed narrowPeak replicated peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF407NPL 3065508 ENCODE Processing Pipeline bc689844c3b6bf3afbb50536aaf66e6f https://www.encodeproject.org/files/ENCFF875BBT/@@download/ENCFF875BBT.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity ENCFF229NXL bam unfiltered alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF198YRQ 3018204129 ENCODE Processing Pipeline 3af5c8fec9205841968c3d78e3f56b7e https://www.encodeproject.org/files/ENCFF229NXL/@@download/ENCFF229NXL.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF912IEL bam unfiltered alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF203BGZ 3272486073 ENCODE Processing Pipeline 4e2e77c07cc0f57ba7f3aa54072b23f4 https://www.encodeproject.org/files/ENCFF912IEL/@@download/ENCFF912IEL.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF848DSS bam alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF198YRQ 2129536679 ENCODE Processing Pipeline e96a3f495c139c859eab20ab852faff7 https://www.encodeproject.org/files/ENCFF848DSS/@@download/ENCFF848DSS.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF567HES bam alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF203BGZ 2041500430 ENCODE Processing Pipeline 985d23afc61e5953b388e58e1b74b5a1 https://www.encodeproject.org/files/ENCFF567HES/@@download/ENCFF567HES.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF410VPY bed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF567HES, ENCFF570IJH 2128379 ENCODE Processing Pipeline c424503ce16f29fc7eed7852b6664955 https://www.encodeproject.org/files/ENCFF410VPY/@@download/ENCFF410VPY.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF075DYW bed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF567HES, ENCFF570IJH, ENCFF848DSS 3485106 ENCODE Processing Pipeline 88ba3bfa365a42dd61b1289a3546346e https://www.encodeproject.org/files/ENCFF075DYW/@@download/ENCFF075DYW.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF220MRQ bed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF848DSS 2993894 ENCODE Processing Pipeline 09a5e7ae9c0222d94cba2dfd3816e72a https://www.encodeproject.org/files/ENCFF220MRQ/@@download/ENCFF220MRQ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF960JJJ bigBed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF410VPY 4396744 ENCODE Processing Pipeline ee6b344723205709c4028d1271e848d5 https://www.encodeproject.org/files/ENCFF960JJJ/@@download/ENCFF960JJJ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF710KHC bigBed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF220MRQ 5852616 ENCODE Processing Pipeline bd2ccd047cf2918f71ba5a3b2510b7ba https://www.encodeproject.org/files/ENCFF710KHC/@@download/ENCFF710KHC.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF139XQX bigBed narrowPeak peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF075DYW 6736802 ENCODE Processing Pipeline 19e12b011c0ccb56c1a4eda8ecc2a82f https://www.encodeproject.org/files/ENCFF139XQX/@@download/ENCFF139XQX.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF397JVQ bigWig signal p-value ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF567HES, ENCFF570IJH 597693072 ENCODE Processing Pipeline af866726099906ba81ad88ff83212f69 https://www.encodeproject.org/files/ENCFF397JVQ/@@download/ENCFF397JVQ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF152MUK bigWig signal p-value ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF848DSS 1068750416 ENCODE Processing Pipeline 451e0b830a46215d1641c2e46a683e25 https://www.encodeproject.org/files/ENCFF152MUK/@@download/ENCFF152MUK.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF474RIW bigWig signal p-value ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF567HES, ENCFF570IJH, ENCFF848DSS 1212153886 ENCODE Processing Pipeline 8e917f1abf1237f0b032a1e0566d928f https://www.encodeproject.org/files/ENCFF474RIW/@@download/ENCFF474RIW.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF138BDA bigWig fold change over control ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF567HES, ENCFF570IJH 829012011 ENCODE Processing Pipeline b6f316f724d77707b3aea1d56b15d7d6 https://www.encodeproject.org/files/ENCFF138BDA/@@download/ENCFF138BDA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF769HMD bigWig fold change over control ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF848DSS 999752193 ENCODE Processing Pipeline 795134ad16dd083c85b27ace1cca07b1 https://www.encodeproject.org/files/ENCFF769HMD/@@download/ENCFF769HMD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF865VFL bigWig fold change over control ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF567HES, ENCFF570IJH, ENCFF848DSS 1575665810 ENCODE Processing Pipeline 011b2051cb18d6065de98201bf0e6aa2 https://www.encodeproject.org/files/ENCFF865VFL/@@download/ENCFF865VFL.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF355VUL bed narrowPeak replicated peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF075DYW, ENCFF220MRQ, ENCFF410VPY 1590575 ENCODE Processing Pipeline 96098034840ab57219e6325515a8ddfe https://www.encodeproject.org/files/ENCFF355VUL/@@download/ENCFF355VUL.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF678MAU bigBed narrowPeak replicated peaks ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF355VUL 3252407 ENCODE Processing Pipeline bcba456a8a73051c781dae289a0bfc12 https://www.encodeproject.org/files/ENCFF678MAU/@@download/ENCFF678MAU.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF001LKI bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LKT 374314699 Bing Ren, UCSD fcea5d8d140f7a40e4adc817fc61ef63 https://www.encodeproject.org/files/ENCFF001LKI/@@download/ENCFF001LKI.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LKJ bigBed broadPeak peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAH 660714 Bing Ren, UCSD f991944d14dbb262c94cf610aecd62a7 https://www.encodeproject.org/files/ENCFF001LKJ/@@download/ENCFF001LKJ.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LKK bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LKS 633749326 Bing Ren, UCSD ca87b1fe60f74c60b7a85c859953ad4c https://www.encodeproject.org/files/ENCFF001LKK/@@download/ENCFF001LKK.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LKL bigWig signal ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKI, ENCFF001LKK 51981298 Bing Ren, UCSD ac2c7ef786de215ef20b848db12d3401 https://www.encodeproject.org/files/ENCFF001LKL/@@download/ENCFF001LKL.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LKS fastq reads ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 845503911 Bing Ren, UCSD b7e2fcfb2b2523d3641b75070e736cf8 https://www.encodeproject.org/files/ENCFF001LKS/@@download/ENCFF001LKS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LKT fastq reads ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 728662005 Bing Ren, UCSD 40dd2bd766b5eeb75df37524dfc50523 https://www.encodeproject.org/files/ENCFF001LKT/@@download/ENCFF001LKT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001YAH bed broadPeak peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKI, ENCFF001LKK 408177 Bing Ren, UCSD de3c90de4c7cf98098fdd3b8a63f1291 https://www.encodeproject.org/files/ENCFF001YAH/@@download/ENCFF001YAH.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF553TDF bam unfiltered alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKS, ENCFF018NEO 910646985 ENCODE Processing Pipeline bc71351e4c0ccc2aa3327fd75bfe3607 https://www.encodeproject.org/files/ENCFF553TDF/@@download/ENCFF553TDF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF604NSV bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKT, ENCFF018NEO 362456918 ENCODE Processing Pipeline 63a07c288fcde35a7e370989461aa01d https://www.encodeproject.org/files/ENCFF604NSV/@@download/ENCFF604NSV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF659DWI bam unfiltered alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKT, ENCFF018NEO 774035448 ENCODE Processing Pipeline 1b77e21f452e74c146eabd1f3612ad59 https://www.encodeproject.org/files/ENCFF659DWI/@@download/ENCFF659DWI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF042BFD bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKS, ENCFF018NEO 477222118 ENCODE Processing Pipeline b6725f9b1cecba0a259251280378c3d6 https://www.encodeproject.org/files/ENCFF042BFD/@@download/ENCFF042BFD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF386MTU bigWig fold change over control ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 177049754 ENCODE Processing Pipeline 69f03c92e9af309120df8ca9b530c71b https://www.encodeproject.org/files/ENCFF386MTU/@@download/ENCFF386MTU.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF466TIE bed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ 3781839 ENCODE Processing Pipeline 5658803dc1c604501067a0f81cc19819 https://www.encodeproject.org/files/ENCFF466TIE/@@download/ENCFF466TIE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF843QRW bigWig signal p-value ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 282760575 ENCODE Processing Pipeline 45eaf60f3f5614c5ce170e334b8619e0 https://www.encodeproject.org/files/ENCFF843QRW/@@download/ENCFF843QRW.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF966RLY bigWig fold change over control ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ 193901788 ENCODE Processing Pipeline c101aa60c67f79b0ddeb5e328d213274 https://www.encodeproject.org/files/ENCFF966RLY/@@download/ENCFF966RLY.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF868AOT bigWig fold change over control ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 301701171 ENCODE Processing Pipeline 80782c0e926c113696ec0e918536b3d5 https://www.encodeproject.org/files/ENCFF868AOT/@@download/ENCFF868AOT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF838VJB bed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 4533234 ENCODE Processing Pipeline a3b4c0c97537e6e0358a77472cd9b7fe https://www.encodeproject.org/files/ENCFF838VJB/@@download/ENCFF838VJB.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF355MSF bigBed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF466TIE 8225946 ENCODE Processing Pipeline 173b66d6605f4b23c12a3c63daf41d72 https://www.encodeproject.org/files/ENCFF355MSF/@@download/ENCFF355MSF.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF034DKV bigWig signal p-value ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ 326505969 ENCODE Processing Pipeline 1c7ccbc710f26487a9fdafd4750d083d https://www.encodeproject.org/files/ENCFF034DKV/@@download/ENCFF034DKV.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF305EHP bigWig signal p-value ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 373078048 ENCODE Processing Pipeline b2c24126495b35151668e5a88e3e34be https://www.encodeproject.org/files/ENCFF305EHP/@@download/ENCFF305EHP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF931IXU bigBed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF270RGP 12623382 ENCODE Processing Pipeline 8c2817172093e4daa30b40f2ad584dfd https://www.encodeproject.org/files/ENCFF931IXU/@@download/ENCFF931IXU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF899ZWB bed narrowPeak conservative idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF270RGP, ENCFF466TIE, ENCFF547MET, ENCFF838VJB 420600 ENCODE Processing Pipeline de788765ad4c0db1bc5854b3b91cea40 https://www.encodeproject.org/files/ENCFF899ZWB/@@download/ENCFF899ZWB.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF752SPM bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF454MFZ 938738 ENCODE Processing Pipeline 118c9f79b236c1e44e99fb3f839c1c16 https://www.encodeproject.org/files/ENCFF752SPM/@@download/ENCFF752SPM.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF270RGP bed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF042BFD, ENCFF262EEH, ENCFF465PJQ, ENCFF604NSV 5669327 ENCODE Processing Pipeline 94a33bdbe4e88bfad0c48351a9d9ac57 https://www.encodeproject.org/files/ENCFF270RGP/@@download/ENCFF270RGP.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF907UCH bigBed narrowPeak peaks and background as input for IDR ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF838VJB 10175700 ENCODE Processing Pipeline ba1150a3c0021724af96fbffce83f23a https://www.encodeproject.org/files/ENCFF907UCH/@@download/ENCFF907UCH.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF925KPA bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF899ZWB 867755 ENCODE Processing Pipeline 59ee0ed596751a6444a22833e4520c8b https://www.encodeproject.org/files/ENCFF925KPA/@@download/ENCFF925KPA.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF454MFZ bed narrowPeak optimal idr thresholded peaks ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF270RGP, ENCFF466TIE, ENCFF547MET, ENCFF838VJB 467428 ENCODE Processing Pipeline 632f1826ff37c9254f1d75dabed59a86 https://www.encodeproject.org/files/ENCFF454MFZ/@@download/ENCFF454MFZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001KCE bam alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KCT 1004342117 Bing Ren, UCSD a426657c9c82c96771f361226de84e31 https://www.encodeproject.org/files/ENCFF001KCE/@@download/ENCFF001KCE.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KCJ bigBed broadPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XWM 1879279 Bing Ren, UCSD 554a2b1d74576554f84df72ae7a79d83 https://www.encodeproject.org/files/ENCFF001KCJ/@@download/ENCFF001KCJ.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KCK bigWig signal ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KCE, ENCFF001KCL 61808390 Bing Ren, UCSD 7f995518e1b75d4ec35f85771f6ae474 https://www.encodeproject.org/files/ENCFF001KCK/@@download/ENCFF001KCK.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KCL bam alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KCV 776154047 Bing Ren, UCSD 136c2a62ee75518f4d919485cda5f1af https://www.encodeproject.org/files/ENCFF001KCL/@@download/ENCFF001KCL.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KCT fastq reads ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 1714113838 Bing Ren, UCSD a373f788ebe5b5abc8e53edc64f0d6b4 https://www.encodeproject.org/files/ENCFF001KCT/@@download/ENCFF001KCT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KCX/ released low read length insufficient read depth, control insufficient read depth ENCFF001KCV fastq reads ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 877734554 Bing Ren, UCSD b8b0a9173cdb58e632167bbb21d97c75 https://www.encodeproject.org/files/ENCFF001KCV/@@download/ENCFF001KCV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KDF/ released low read length insufficient read depth, control insufficient read depth ENCFF001XWM bed broadPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KCE, ENCFF001KCL 974564 Bing Ren, UCSD 37d216ee28aa1bf7df53f62f310e22bb https://www.encodeproject.org/files/ENCFF001XWM/@@download/ENCFF001XWM.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF196GHD bam unfiltered alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KCV, ENCFF018NEO 994429111 ENCODE Processing Pipeline b4b9e596bf7d7cc8d99da15cbde2bcb1 https://www.encodeproject.org/files/ENCFF196GHD/@@download/ENCFF196GHD.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF091QBQ bam unfiltered alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCT, ENCFF018NEO 1860153915 ENCODE Processing Pipeline 050b8504f568bddbcc661f28809bf8ed https://www.encodeproject.org/files/ENCFF091QBQ/@@download/ENCFF091QBQ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF725GBS bam alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KCV, ENCFF018NEO 731986099 ENCODE Processing Pipeline 61148c19c1a8b3a5f9c9eec5e0c6aa81 https://www.encodeproject.org/files/ENCFF725GBS/@@download/ENCFF725GBS.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF072JFV bam alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCT, ENCFF018NEO 1108402587 ENCODE Processing Pipeline a33780e5aadacee7d97a3f40798fbb2e https://www.encodeproject.org/files/ENCFF072JFV/@@download/ENCFF072JFV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF812SRR bed narrowPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF072JFV, ENCFF555HBY, ENCFF745XER 2738599 ENCODE Processing Pipeline a2d3832b658f43ad344e364aa0b0cb54 https://www.encodeproject.org/files/ENCFF812SRR/@@download/ENCFF812SRR.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF651JAI bigBed narrowPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF746YEV 5296734 ENCODE Processing Pipeline 94633fd501b0b00d2b560457559e44dd https://www.encodeproject.org/files/ENCFF651JAI/@@download/ENCFF651JAI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF230NFS bed narrowPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF555HBY, ENCFF725GBS, ENCFF745XER 2052207 ENCODE Processing Pipeline 540d36cec6e3b25c5811d54ee76f02b0 https://www.encodeproject.org/files/ENCFF230NFS/@@download/ENCFF230NFS.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF746YEV bed narrowPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF072JFV, ENCFF555HBY, ENCFF725GBS, ENCFF745XER 2153600 ENCODE Processing Pipeline 4cbdb42c70425041b0df22aa9023a6ed https://www.encodeproject.org/files/ENCFF746YEV/@@download/ENCFF746YEV.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF690CWA bigBed narrowPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF230NFS 5245103 ENCODE Processing Pipeline 140eb2a79bec88ad152ca82839d3859c https://www.encodeproject.org/files/ENCFF690CWA/@@download/ENCFF690CWA.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF453NXS bigBed narrowPeak peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF812SRR 6592477 ENCODE Processing Pipeline cec49a3b4e1e540f29a794387f794439 https://www.encodeproject.org/files/ENCFF453NXS/@@download/ENCFF453NXS.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF401DXH bigWig signal p-value ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF555HBY, ENCFF725GBS, ENCFF745XER 385004577 ENCODE Processing Pipeline 1d567e888e36c9adaf090518765fd9ef https://www.encodeproject.org/files/ENCFF401DXH/@@download/ENCFF401DXH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF336VDW bigWig signal p-value ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF072JFV, ENCFF555HBY, ENCFF745XER 429881917 ENCODE Processing Pipeline ef0b3ea19dc7fe287f849ecef12fc8d9 https://www.encodeproject.org/files/ENCFF336VDW/@@download/ENCFF336VDW.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF094JLW bigWig signal p-value ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF072JFV, ENCFF555HBY, ENCFF725GBS, ENCFF745XER 435317980 ENCODE Processing Pipeline 5a5a8a1169c96057e122a50687b129cf https://www.encodeproject.org/files/ENCFF094JLW/@@download/ENCFF094JLW.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF942AYM bigWig fold change over control ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF072JFV, ENCFF555HBY, ENCFF745XER 410094429 ENCODE Processing Pipeline 78a4696fcfaa2dcf028c75c82d610d99 https://www.encodeproject.org/files/ENCFF942AYM/@@download/ENCFF942AYM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF214LBI bigWig fold change over control ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF555HBY, ENCFF725GBS, ENCFF745XER 319648495 ENCODE Processing Pipeline 174e2472442f7381dc8651270e1ebd5c https://www.encodeproject.org/files/ENCFF214LBI/@@download/ENCFF214LBI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF815CFZ bigWig fold change over control ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF072JFV, ENCFF555HBY, ENCFF725GBS, ENCFF745XER 599462644 ENCODE Processing Pipeline a4ad752b2abd38e42b943cc274a80c9c https://www.encodeproject.org/files/ENCFF815CFZ/@@download/ENCFF815CFZ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF354KFL bed narrowPeak replicated peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF230NFS, ENCFF746YEV, ENCFF812SRR 2179257 ENCODE Processing Pipeline 2c930e2f44d4ad9fbe0f261c52166ef8 https://www.encodeproject.org/files/ENCFF354KFL/@@download/ENCFF354KFL.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF975QSJ bigBed narrowPeak replicated peaks ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF354KFL 4203400 ENCODE Processing Pipeline 6d737fdc8641523c80fa4a5493d91b40 https://www.encodeproject.org/files/ENCFF975QSJ/@@download/ENCFF975QSJ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001KMS bam alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KNF 294423180 Bing Ren, UCSD 0a64c4ebb515234407728cdc247992bc https://www.encodeproject.org/files/ENCFF001KMS/@@download/ENCFF001KMS.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KMT bam alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KNE 663997578 Bing Ren, UCSD 353b77d6eed9a64b293f350d03f1389a https://www.encodeproject.org/files/ENCFF001KMT/@@download/ENCFF001KMT.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KMU bigBed broadPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XXZ 1653625 Bing Ren, UCSD 445163663c64bc389123319a564519eb https://www.encodeproject.org/files/ENCFF001KMU/@@download/ENCFF001KMU.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KMX bigWig signal ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KMS, ENCFF001KMT 45276490 Bing Ren, UCSD 016a67addd1f0b23af2494dd582892e3 https://www.encodeproject.org/files/ENCFF001KMX/@@download/ENCFF001KMX.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KNE fastq reads ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 735536489 Bing Ren, UCSD 58dd53af9569b75a5311870af39874c4 https://www.encodeproject.org/files/ENCFF001KNE/@@download/ENCFF001KNE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNY/ released low read length insufficient read depth, control insufficient read depth ENCFF001KNF fastq reads ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 577991980 Bing Ren, UCSD e8b37bf7d43ce66a8e5705fee0d330b4 https://www.encodeproject.org/files/ENCFF001KNF/@@download/ENCFF001KNF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNX/ released low read length insufficient read depth, control insufficient read depth ENCFF001XXZ bed broadPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KMS, ENCFF001KMT 876471 Bing Ren, UCSD 72ebd5b5ae5716efbcaa3dfd2d12cc63 https://www.encodeproject.org/files/ENCFF001XXZ/@@download/ENCFF001XXZ.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF109TUY bam unfiltered alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KNF, ENCFF018NEO 623639894 ENCODE Processing Pipeline 8e45ee42ac696c9e0ef0eda60808af39 https://www.encodeproject.org/files/ENCFF109TUY/@@download/ENCFF109TUY.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF315VXV bam unfiltered alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KNE, ENCFF018NEO 824138588 ENCODE Processing Pipeline 1b4c22745273e4fabf22dcd3b9c52204 https://www.encodeproject.org/files/ENCFF315VXV/@@download/ENCFF315VXV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF380FAM bam alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KNF, ENCFF018NEO 295717088 ENCODE Processing Pipeline f938d8ae1930604f94644d44232888de https://www.encodeproject.org/files/ENCFF380FAM/@@download/ENCFF380FAM.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF087XCZ bam alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KNE, ENCFF018NEO 586507236 ENCODE Processing Pipeline 29df2471a13582f461001e8a29cdb301 https://www.encodeproject.org/files/ENCFF087XCZ/@@download/ENCFF087XCZ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF620KGL bed narrowPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF380FAM, ENCFF465JMB, ENCFF515GCB 2490198 ENCODE Processing Pipeline 169bcf839f53bf3fb42c68c969bc362f https://www.encodeproject.org/files/ENCFF620KGL/@@download/ENCFF620KGL.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF886GIX bed narrowPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF087XCZ, ENCFF380FAM, ENCFF465JMB, ENCFF515GCB 3923512 ENCODE Processing Pipeline bf05599bd73437d12493e4f0b3b6c9c3 https://www.encodeproject.org/files/ENCFF886GIX/@@download/ENCFF886GIX.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF569XDC bigBed narrowPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF620KGL 5896158 ENCODE Processing Pipeline c77780b52de53ad6992412d4ce3bf656 https://www.encodeproject.org/files/ENCFF569XDC/@@download/ENCFF569XDC.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF651PTS bigBed narrowPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF189WSW 10160410 ENCODE Processing Pipeline d826726adedc327e3cdb067652bfd151 https://www.encodeproject.org/files/ENCFF651PTS/@@download/ENCFF651PTS.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF189WSW bed narrowPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF087XCZ, ENCFF465JMB, ENCFF515GCB 3691314 ENCODE Processing Pipeline b0c716aee6089cacdaed4eac069f2f6a https://www.encodeproject.org/files/ENCFF189WSW/@@download/ENCFF189WSW.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF656HNK bigBed narrowPeak peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF886GIX 10700582 ENCODE Processing Pipeline 141ba3c620223be3249393258c07ccdc https://www.encodeproject.org/files/ENCFF656HNK/@@download/ENCFF656HNK.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF903GYT bigWig signal p-value ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF380FAM, ENCFF465JMB, ENCFF515GCB 289919958 ENCODE Processing Pipeline de3ef5b612b3fa5119184f52a0f9a42f https://www.encodeproject.org/files/ENCFF903GYT/@@download/ENCFF903GYT.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF306XIS bigWig signal p-value ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF087XCZ, ENCFF465JMB, ENCFF515GCB 361084250 ENCODE Processing Pipeline 228882e38f6b7941aeee0e17f913632b https://www.encodeproject.org/files/ENCFF306XIS/@@download/ENCFF306XIS.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF902OKZ bigWig signal p-value ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF087XCZ, ENCFF380FAM, ENCFF465JMB, ENCFF515GCB 353310926 ENCODE Processing Pipeline 912fe00ab9c3f9bbc0eaedf321334d94 https://www.encodeproject.org/files/ENCFF902OKZ/@@download/ENCFF902OKZ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF645VRS bigWig fold change over control ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF087XCZ, ENCFF465JMB, ENCFF515GCB 244451815 ENCODE Processing Pipeline cc66f4c1651a0082f1e9b3c7dd2677d0 https://www.encodeproject.org/files/ENCFF645VRS/@@download/ENCFF645VRS.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF067IHB bigWig fold change over control ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF380FAM, ENCFF465JMB, ENCFF515GCB 152821145 ENCODE Processing Pipeline 978ba76c38d6cb76c14f1fdd2029d40e https://www.encodeproject.org/files/ENCFF067IHB/@@download/ENCFF067IHB.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF881VZQ bigWig fold change over control ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF087XCZ, ENCFF380FAM, ENCFF465JMB, ENCFF515GCB 323995836 ENCODE Processing Pipeline cc0c52f83930126f757acbdb83f575b3 https://www.encodeproject.org/files/ENCFF881VZQ/@@download/ENCFF881VZQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF214ABX bigBed narrowPeak replicated peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF338OJA 6200731 ENCODE Processing Pipeline 4670a5afaa0915bc548761fe94211eb0 https://www.encodeproject.org/files/ENCFF214ABX/@@download/ENCFF214ABX.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF338OJA bed narrowPeak replicated peaks ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF189WSW, ENCFF620KGL, ENCFF886GIX 3038786 ENCODE Processing Pipeline 3b988e07132a2c9837c11896a63d7201 https://www.encodeproject.org/files/ENCFF338OJA/@@download/ENCFF338OJA.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001LRF bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LRL 696210751 Bing Ren, UCSD ee847f24ee6b9e59d95b0d1da8c9a2af https://www.encodeproject.org/files/ENCFF001LRF/@@download/ENCFF001LRF.bam mm9 released low read length, inconsistent platforms, low read depth ENCFF001LRG bigBed broadPeak peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAZ 138463 Bing Ren, UCSD 0554319373ddbbe5424193eba420016a https://www.encodeproject.org/files/ENCFF001LRG/@@download/ENCFF001LRG.bigBed mm9 released low read length, inconsistent platforms, low read depth ENCFF001LRH bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LRT 760049405 Bing Ren, UCSD b32a01a86ab8881ae618c822b0d74cc2 https://www.encodeproject.org/files/ENCFF001LRH/@@download/ENCFF001LRH.bam mm9 released low read length, inconsistent platforms, low read depth ENCFF001LRJ bigWig signal ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LRF, ENCFF001LRH 83470884 Bing Ren, UCSD b144d4c71d5c3921fbf0a98468c52f14 https://www.encodeproject.org/files/ENCFF001LRJ/@@download/ENCFF001LRJ.bigWig mm9 released low read length, inconsistent platforms, low read depth ENCFF001LRL fastq reads ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 721564026 Bing Ren, UCSD 5d1b072b37202b54981ad287aa7c7d8c https://www.encodeproject.org/files/ENCFF001LRL/@@download/ENCFF001LRL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KVR/ released low read length, inconsistent platforms, low read depth ENCFF001LRT fastq reads ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 819053704 Bing Ren, UCSD a11847b3c696956d09a162cdf20aeb09 https://www.encodeproject.org/files/ENCFF001LRT/@@download/ENCFF001LRT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KWE/ released low read length, inconsistent platforms, inconsistent control read length, low read depth ENCFF001YAZ bed broadPeak peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LRF, ENCFF001LRH 75096 Bing Ren, UCSD e434197e1989ea58597d1470d1bd1e80 https://www.encodeproject.org/files/ENCFF001YAZ/@@download/ENCFF001YAZ.bed.gz mm9 released low read length, inconsistent platforms, low read depth ENCFF655DIK bam unfiltered alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LRL, ENCFF018NEO 792115881 ENCODE Processing Pipeline a9f5eda67e3f5e4203540c80bc54cb88 https://www.encodeproject.org/files/ENCFF655DIK/@@download/ENCFF655DIK.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF134IUG bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LRL, ENCFF018NEO 449852591 ENCODE Processing Pipeline a18aa199b0076b0ca150def79b8a3ab1 https://www.encodeproject.org/files/ENCFF134IUG/@@download/ENCFF134IUG.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF940NRQ bam unfiltered alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRT, ENCFF018NEO 890417858 ENCODE Processing Pipeline 2800a404d63e237865aa05cccd160f39 https://www.encodeproject.org/files/ENCFF940NRQ/@@download/ENCFF940NRQ.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF514JHP bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRT, ENCFF018NEO 499875300 ENCODE Processing Pipeline a65cff310e8311005d644653ce8987fc https://www.encodeproject.org/files/ENCFF514JHP/@@download/ENCFF514JHP.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF935CVE bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF746AKH 341886 ENCODE Processing Pipeline 0b6ce69c0ce6b60c5ca82904ede2823f https://www.encodeproject.org/files/ENCFF935CVE/@@download/ENCFF935CVE.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF408CGQ bigWig fold change over control ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF134IUG, ENCFF314OGN, ENCFF705BZU 338165984 ENCODE Processing Pipeline fdf146b90d277fe1cd74454288feaea2 https://www.encodeproject.org/files/ENCFF408CGQ/@@download/ENCFF408CGQ.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF585YDB bed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 4423772 ENCODE Processing Pipeline 523a7fc3a840ae70df5d3e956e1020df https://www.encodeproject.org/files/ENCFF585YDB/@@download/ENCFF585YDB.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF256FLB bigBed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF518LVB 10478837 ENCODE Processing Pipeline d5ffa949fd34f2abfe8ee55d0f3425f5 https://www.encodeproject.org/files/ENCFF256FLB/@@download/ENCFF256FLB.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF321MTN bigBed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF555WTT 1560176 ENCODE Processing Pipeline e31f01a553724b4557d66e20b3997a39 https://www.encodeproject.org/files/ENCFF321MTN/@@download/ENCFF321MTN.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF746AKH bed narrowPeak conservative idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF518LVB, ENCFF547MET, ENCFF555WTT, ENCFF585YDB 156798 ENCODE Processing Pipeline 90100932e439ff1a96d02128f9ad4bab https://www.encodeproject.org/files/ENCFF746AKH/@@download/ENCFF746AKH.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF555WTT bed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF134IUG, ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 643947 ENCODE Processing Pipeline 66cb94639d9b60a8d8d795f1aacce8ef https://www.encodeproject.org/files/ENCFF555WTT/@@download/ENCFF555WTT.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF744ZIL bigWig signal p-value ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 467999021 ENCODE Processing Pipeline 79c650fff8508470a95fbe269302c0db https://www.encodeproject.org/files/ENCFF744ZIL/@@download/ENCFF744ZIL.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF500CDH bed narrowPeak optimal idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF518LVB, ENCFF547MET, ENCFF555WTT, ENCFF585YDB 167457 ENCODE Processing Pipeline 4f82008b81e781adea9a653694afcf76 https://www.encodeproject.org/files/ENCFF500CDH/@@download/ENCFF500CDH.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF917JJU bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF500CDH 358339 ENCODE Processing Pipeline 361abef7f8288cad3ff3c7748d0609f5 https://www.encodeproject.org/files/ENCFF917JJU/@@download/ENCFF917JJU.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF235GWE bigWig signal p-value ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF134IUG, ENCFF314OGN, ENCFF705BZU 509705723 ENCODE Processing Pipeline 2251b25021d66f5ea0d796d6c7fec889 https://www.encodeproject.org/files/ENCFF235GWE/@@download/ENCFF235GWE.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF255RXH bigWig signal p-value ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF134IUG, ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 586726200 ENCODE Processing Pipeline 9f8ee41ed374f30f072724e349f21d6e https://www.encodeproject.org/files/ENCFF255RXH/@@download/ENCFF255RXH.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF733KOH bigWig fold change over control ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 352765703 ENCODE Processing Pipeline cf2d9fe22b43bfe55c5f983f36f3ddaa https://www.encodeproject.org/files/ENCFF733KOH/@@download/ENCFF733KOH.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF376VCU bigWig fold change over control ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF134IUG, ENCFF314OGN, ENCFF514JHP, ENCFF705BZU 572460996 ENCODE Processing Pipeline de6400ebb7caa17f73b38be48d8b99ac https://www.encodeproject.org/files/ENCFF376VCU/@@download/ENCFF376VCU.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF518LVB bed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF134IUG, ENCFF314OGN, ENCFF705BZU 4246103 ENCODE Processing Pipeline 65064d6534f8891b203cd7a7d902ab1d https://www.encodeproject.org/files/ENCFF518LVB/@@download/ENCFF518LVB.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF915ADP bigBed narrowPeak peaks and background as input for IDR ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF585YDB 10706002 ENCODE Processing Pipeline db1136a09e3cd3f12de37f728f3c2535 https://www.encodeproject.org/files/ENCFF915ADP/@@download/ENCFF915ADP.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF001NND bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NNG 229850826 Michael Snyder, Stanford a0cf6bfbe2c13de3f261d6d53886f678 https://www.encodeproject.org/files/ENCFF001NND/@@download/ENCFF001NND.bam mm9 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001NNE bigBed narrowPeak peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIV 506607 Michael Snyder, Stanford 262095175080bf2971334d73bc699153 https://www.encodeproject.org/files/ENCFF001NNE/@@download/ENCFF001NNE.bigBed mm9 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001NNG fastq reads ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 474459622 Michael Snyder, Stanford 3a2ae71c45eea2001640ab6ede5ae898 https://www.encodeproject.org/files/ENCFF001NNG/@@download/ENCFF001NNG.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001NNI fastq reads ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1487005124 Michael Snyder, Stanford 434ffaaaf9c36d6c101d3ddb92b5a7ef https://www.encodeproject.org/files/ENCFF001NNI/@@download/ENCFF001NNI.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001NNK bigWig signal ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NND, ENCFF001NNL 149569899 Michael Snyder, Stanford b249ce84ff6e01cb569e62ebe733d194 https://www.encodeproject.org/files/ENCFF001NNK/@@download/ENCFF001NNK.bigWig mm9 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001NNL bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NNI 655010276 Michael Snyder, Stanford 5ede08caf70664f3cd12bb444bce09d5 https://www.encodeproject.org/files/ENCFF001NNL/@@download/ENCFF001NNL.bam mm9 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001YIV bed narrowPeak peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NND, ENCFF001NNL 209688 Michael Snyder, Stanford 3fa097e8da268063a6d2b4480b07bbc4 https://www.encodeproject.org/files/ENCFF001YIV/@@download/ENCFF001YIV.bed.gz mm9 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF437DRX bam unfiltered alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NNG, ENCFF018NEO 539089368 ENCODE Processing Pipeline 83092ed328fe148f8c075644c14b2ef9 https://www.encodeproject.org/files/ENCFF437DRX/@@download/ENCFF437DRX.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF365KSO bam unfiltered alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNI, ENCFF018NEO 1593718162 ENCODE Processing Pipeline 0a3bea68f50350197fcb4070bc1c8583 https://www.encodeproject.org/files/ENCFF365KSO/@@download/ENCFF365KSO.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF724VSZ bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NNG, ENCFF018NEO 330227818 ENCODE Processing Pipeline 3f6221f057eab42d2496ef8b0a5467dc https://www.encodeproject.org/files/ENCFF724VSZ/@@download/ENCFF724VSZ.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF226MZU bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNI, ENCFF018NEO 954118431 ENCODE Processing Pipeline 06e8d98901209aa8b5a1718e9214cdf4 https://www.encodeproject.org/files/ENCFF226MZU/@@download/ENCFF226MZU.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF494VLZ bigWig signal p-value ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF724VSZ, ENCFF966YUS 369474855 ENCODE Processing Pipeline 854ab7885e9ddadc86f9e9694b45fead https://www.encodeproject.org/files/ENCFF494VLZ/@@download/ENCFF494VLZ.bigWig mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF789SVB bigWig signal p-value ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF226MZU, ENCFF966YUS 511161491 ENCODE Processing Pipeline bae5f8a5cb4d2a3f0a7e3021450d0722 https://www.encodeproject.org/files/ENCFF789SVB/@@download/ENCFF789SVB.bigWig mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF932DRA bigWig signal p-value ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF226MZU, ENCFF724VSZ, ENCFF966YUS 497946897 ENCODE Processing Pipeline df9076480241419cb81adbb5345bffd5 https://www.encodeproject.org/files/ENCFF932DRA/@@download/ENCFF932DRA.bigWig mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF220LMV bigWig fold change over control ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF724VSZ, ENCFF966YUS 197330836 ENCODE Processing Pipeline 0818f0cee4a57286efec420b54a73380 https://www.encodeproject.org/files/ENCFF220LMV/@@download/ENCFF220LMV.bigWig mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF375KEJ bigWig fold change over control ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF226MZU, ENCFF966YUS 467743918 ENCODE Processing Pipeline ebe05d12ee062deba0fb50a68b640351 https://www.encodeproject.org/files/ENCFF375KEJ/@@download/ENCFF375KEJ.bigWig mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF122FYP bigWig fold change over control ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF226MZU, ENCFF724VSZ, ENCFF966YUS 594745320 ENCODE Processing Pipeline 7984a47bbd9be3a1bb759b40d9cf042b https://www.encodeproject.org/files/ENCFF122FYP/@@download/ENCFF122FYP.bigWig mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF622XHL bed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF724VSZ, ENCFF966YUS 3391167 ENCODE Processing Pipeline 5685457e1b81f284768f251362f44c9f https://www.encodeproject.org/files/ENCFF622XHL/@@download/ENCFF622XHL.bed.gz mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF199OAD bed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF226MZU, ENCFF966YUS 5806231 ENCODE Processing Pipeline a27bc49f77c6b20f480fd3b713aa8aa6 https://www.encodeproject.org/files/ENCFF199OAD/@@download/ENCFF199OAD.bed.gz mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF843WHQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF622XHL 7723703 ENCODE Processing Pipeline b27961c802cdf59a083b3f7483f0f6a1 https://www.encodeproject.org/files/ENCFF843WHQ/@@download/ENCFF843WHQ.bigBed mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF431QAW bed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF226MZU, ENCFF724VSZ, ENCFF966YUS 6001756 ENCODE Processing Pipeline a840501463c737d90c0a45ca40dd1365 https://www.encodeproject.org/files/ENCFF431QAW/@@download/ENCFF431QAW.bed.gz mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF017LKY bigBed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF199OAD 13257215 ENCODE Processing Pipeline 58af956f1551f15f35a4d32fb3348851 https://www.encodeproject.org/files/ENCFF017LKY/@@download/ENCFF017LKY.bigBed mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF502OMY bigBed narrowPeak peaks and background as input for IDR ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF431QAW 13330911 ENCODE Processing Pipeline 24e929efaa0ef705f925633ff3408056 https://www.encodeproject.org/files/ENCFF502OMY/@@download/ENCFF502OMY.bigBed mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF030DBG bed narrowPeak conservative idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF199OAD, ENCFF431QAW, ENCFF547MET, ENCFF622XHL 158477 ENCODE Processing Pipeline 98b1480e16e1e29955301dbf2cb7a120 https://www.encodeproject.org/files/ENCFF030DBG/@@download/ENCFF030DBG.bed.gz mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF722CPN bed narrowPeak optimal idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF199OAD, ENCFF431QAW, ENCFF547MET, ENCFF622XHL 207209 ENCODE Processing Pipeline 29ec5d4f84340fa8a01b6b9475a08ade https://www.encodeproject.org/files/ENCFF722CPN/@@download/ENCFF722CPN.bed.gz mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF467ZYZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF030DBG 346285 ENCODE Processing Pipeline bffd6f0c51bda2a807c448712490c157 https://www.encodeproject.org/files/ENCFF467ZYZ/@@download/ENCFF467ZYZ.bigBed mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF426BJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF722CPN 412495 ENCODE Processing Pipeline 311dde9738d6e2ccef63c450fabb91ac https://www.encodeproject.org/files/ENCFF426BJQ/@@download/ENCFF426BJQ.bigBed mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001NEV bigBed narrowPeak peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YHR 340471 Michael Snyder, Stanford e32db2daae7e7d3efe63e7380e98f8c4 https://www.encodeproject.org/files/ENCFF001NEV/@@download/ENCFF001NEV.bigBed mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NEW fastq reads ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 982781920 Michael Snyder, Stanford 471b11377370328fa8611fcb4eb7267d https://www.encodeproject.org/files/ENCFF001NEW/@@download/ENCFF001NEW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NEY fastq reads ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 838855592 Michael Snyder, Stanford 8d045b4d6f721da922941f106dd97aaa https://www.encodeproject.org/files/ENCFF001NEY/@@download/ENCFF001NEY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NFA bigWig signal ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NFB, ENCFF001NFC 213869973 Michael Snyder, Stanford a18cc3aa24b01c5f177d828ff46054a7 https://www.encodeproject.org/files/ENCFF001NFA/@@download/ENCFF001NFA.bigWig mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NFB bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NEW 480692338 Michael Snyder, Stanford 00ad03ab6b8af4ee91a9a620db4b824a https://www.encodeproject.org/files/ENCFF001NFB/@@download/ENCFF001NFB.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NFC bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NEY 449982888 Michael Snyder, Stanford b2b67a0fe1452691292f89e4187895c0 https://www.encodeproject.org/files/ENCFF001NFC/@@download/ENCFF001NFC.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001YHR bed narrowPeak peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NFB, ENCFF001NFC 117604 Michael Snyder, Stanford 0fc258b57e3d4c56baec6c221ea6a2a7 https://www.encodeproject.org/files/ENCFF001YHR/@@download/ENCFF001YHR.bed.gz mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF340ZIU bam unfiltered alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NEW, ENCFF018NEO 1063286485 ENCODE Processing Pipeline 29ced180670bfe0b271e73ae3c1e3c48 https://www.encodeproject.org/files/ENCFF340ZIU/@@download/ENCFF340ZIU.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF555MXH bam unfiltered alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NEY, ENCFF018NEO 910914465 ENCODE Processing Pipeline 245a1972d76200c9f416c7164653a850 https://www.encodeproject.org/files/ENCFF555MXH/@@download/ENCFF555MXH.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF702BLC bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NEW, ENCFF018NEO 713227360 ENCODE Processing Pipeline dbd2c5609d047e8c1a2429babd3712fe https://www.encodeproject.org/files/ENCFF702BLC/@@download/ENCFF702BLC.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF413NFE bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NEY, ENCFF018NEO 623110394 ENCODE Processing Pipeline 0b393f3741b720708e4efa8a02967e1a https://www.encodeproject.org/files/ENCFF413NFE/@@download/ENCFF413NFE.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF137CEW bigWig signal p-value ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF702BLC 235357446 ENCODE Processing Pipeline ab37e55ec4b8b39fd8f39a9e56439686 https://www.encodeproject.org/files/ENCFF137CEW/@@download/ENCFF137CEW.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF519DKI bigWig signal p-value ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF413NFE 227231578 ENCODE Processing Pipeline d70a48dd8e2cb5f8cc3c23ad2191aa3e https://www.encodeproject.org/files/ENCFF519DKI/@@download/ENCFF519DKI.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF350SJN bigWig signal p-value ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF413NFE, ENCFF702BLC 216753119 ENCODE Processing Pipeline 21b36f6fbfacf86d08f6c261d930413e https://www.encodeproject.org/files/ENCFF350SJN/@@download/ENCFF350SJN.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF002VGD bigWig fold change over control ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF702BLC 292810537 ENCODE Processing Pipeline aea99e2697c5e936b2346521ee03713c https://www.encodeproject.org/files/ENCFF002VGD/@@download/ENCFF002VGD.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF501EDN bigWig fold change over control ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF413NFE 254747777 ENCODE Processing Pipeline 87aa03d9fc45b5131ba21385e8716bf0 https://www.encodeproject.org/files/ENCFF501EDN/@@download/ENCFF501EDN.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF217FQC bigWig fold change over control ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF413NFE, ENCFF702BLC 483920574 ENCODE Processing Pipeline 8cd7eca1a646df6582173184d408c9d4 https://www.encodeproject.org/files/ENCFF217FQC/@@download/ENCFF217FQC.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF750VUM bed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF413NFE 5678630 ENCODE Processing Pipeline 404237e0571fe95d2f9eccc2da42ebfd https://www.encodeproject.org/files/ENCFF750VUM/@@download/ENCFF750VUM.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF513MBD bed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF702BLC 5976060 ENCODE Processing Pipeline 06d9dd090e781aa4382133a3cbb9e532 https://www.encodeproject.org/files/ENCFF513MBD/@@download/ENCFF513MBD.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF295RUE bigBed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF513MBD 12710166 ENCODE Processing Pipeline 518e7bcd9aea54ebea986199b6126e81 https://www.encodeproject.org/files/ENCFF295RUE/@@download/ENCFF295RUE.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF063TGF bed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF413NFE, ENCFF702BLC 6567801 ENCODE Processing Pipeline 21453d7883046bec519bffc681002efd https://www.encodeproject.org/files/ENCFF063TGF/@@download/ENCFF063TGF.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF887ILM bigBed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF750VUM 12706186 ENCODE Processing Pipeline 8fa5350e6a1ea0227e315456f69868a8 https://www.encodeproject.org/files/ENCFF887ILM/@@download/ENCFF887ILM.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF296GPB bigBed narrowPeak peaks and background as input for IDR ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF063TGF 12603237 ENCODE Processing Pipeline d99be38e744a2a849a572ff2aa16ed7c https://www.encodeproject.org/files/ENCFF296GPB/@@download/ENCFF296GPB.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF811JIG bed narrowPeak conservative idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF063TGF, ENCFF513MBD, ENCFF547MET, ENCFF750VUM 314267 ENCODE Processing Pipeline bf19d7968758e776d1d6dd4747f7efd4 https://www.encodeproject.org/files/ENCFF811JIG/@@download/ENCFF811JIG.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF696PFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF811JIG 776110 ENCODE Processing Pipeline a36f0c12390e08afb948f86ec415fdee https://www.encodeproject.org/files/ENCFF696PFW/@@download/ENCFF696PFW.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF265CAB bed narrowPeak optimal idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF063TGF, ENCFF513MBD, ENCFF547MET, ENCFF750VUM 331303 ENCODE Processing Pipeline 8a8ad31a532c1f2279298bd5459a50a9 https://www.encodeproject.org/files/ENCFF265CAB/@@download/ENCFF265CAB.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF625BRI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF265CAB 813580 ENCODE Processing Pipeline ef1bfb255c605888cadbb29d27cf0f9b https://www.encodeproject.org/files/ENCFF625BRI/@@download/ENCFF625BRI.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF002AJU fastq reads ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1869924519 Bing Ren, UCSD dbe9a637a1266d407bab1c34b76b274a SRA:SRR3651627 https://www.encodeproject.org/files/ENCFF002AJU/@@download/ENCFF002AJU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQD/ released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF002AJW fastq reads ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2213245016 Bing Ren, UCSD b67e9618bca4ce00ab251bfa4ac16533 SRA:SRR3651626 https://www.encodeproject.org/files/ENCFF002AJW/@@download/ENCFF002AJW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQH/ released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF492ILF bam alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJW, ENCFF806TVZ 1755471124 ENCODE Processing Pipeline 6db46aa25bddeeb69e38d9da3cc1d0a6 https://www.encodeproject.org/files/ENCFF492ILF/@@download/ENCFF492ILF.bam mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF759VWI bam alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJU, ENCFF806TVZ 1497699747 ENCODE Processing Pipeline a25b8c239ca3ff5ce4babd0888f1f450 https://www.encodeproject.org/files/ENCFF759VWI/@@download/ENCFF759VWI.bam mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF238UVL bed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF759VWI, ENCFF999ZTB 1047211 ENCODE Processing Pipeline 10c89d7d026d2626a6bb7cdb189ab63b https://www.encodeproject.org/files/ENCFF238UVL/@@download/ENCFF238UVL.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF926WGQ bed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF492ILF, ENCFF999ZTB 1058633 ENCODE Processing Pipeline d31b4ea027718bce3a65faad610ded1d https://www.encodeproject.org/files/ENCFF926WGQ/@@download/ENCFF926WGQ.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF248PMZ bed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF492ILF, ENCFF759VWI, ENCFF999ZTB 814522 ENCODE Processing Pipeline 48340d34ba4cbdd210759fbddb50c2c6 https://www.encodeproject.org/files/ENCFF248PMZ/@@download/ENCFF248PMZ.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF767CUV bigBed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248PMZ 2208749 ENCODE Processing Pipeline 93fab10b5ba362bcc70f3f0de19feded https://www.encodeproject.org/files/ENCFF767CUV/@@download/ENCFF767CUV.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF767GDF bigWig signal p-value ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF759VWI, ENCFF999ZTB 432282395 ENCODE Processing Pipeline f2d241f159fe4007e95a0c475aebbb04 https://www.encodeproject.org/files/ENCFF767GDF/@@download/ENCFF767GDF.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF738YCK bigBed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF926WGQ 2234344 ENCODE Processing Pipeline 6fc45a1e4eda9693f52ad9d94e2cc186 https://www.encodeproject.org/files/ENCFF738YCK/@@download/ENCFF738YCK.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF570IJQ bigBed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238UVL 2228451 ENCODE Processing Pipeline 1a43c045b2401ecf32a9de36af6020d1 https://www.encodeproject.org/files/ENCFF570IJQ/@@download/ENCFF570IJQ.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF709XNU bigWig signal p-value ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF492ILF, ENCFF999ZTB 422423096 ENCODE Processing Pipeline 5a6879dfb59311c1e8a1c715bc3c699a https://www.encodeproject.org/files/ENCFF709XNU/@@download/ENCFF709XNU.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF439EGD bigWig signal p-value ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF492ILF, ENCFF759VWI, ENCFF999ZTB 401568192 ENCODE Processing Pipeline 07e72ab797644dbfd2c36835b23c70c3 https://www.encodeproject.org/files/ENCFF439EGD/@@download/ENCFF439EGD.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF685XUM bigWig fold change over control ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF759VWI, ENCFF999ZTB 438903812 ENCODE Processing Pipeline da43da54edfac7b647069ca71a966abd https://www.encodeproject.org/files/ENCFF685XUM/@@download/ENCFF685XUM.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF397DCM bigWig fold change over control ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF492ILF, ENCFF999ZTB 492151538 ENCODE Processing Pipeline 8e2dca253ee490f1d623f2b61b89e37a https://www.encodeproject.org/files/ENCFF397DCM/@@download/ENCFF397DCM.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF342EQN bigWig fold change over control ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF492ILF, ENCFF759VWI, ENCFF999ZTB 773268450 ENCODE Processing Pipeline a2fb5ed291b92c893ed032cec8c57c25 https://www.encodeproject.org/files/ENCFF342EQN/@@download/ENCFF342EQN.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF955CNX bed narrowPeak replicated peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF238UVL, ENCFF248PMZ, ENCFF926WGQ 849571 ENCODE Processing Pipeline 7cdade82d7ddf61e65682611853d64e9 https://www.encodeproject.org/files/ENCFF955CNX/@@download/ENCFF955CNX.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF613LGV bigBed narrowPeak replicated peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF955CNX 1973558 ENCODE Processing Pipeline a1d984a024ec3281a630efbfc99035e6 https://www.encodeproject.org/files/ENCFF613LGV/@@download/ENCFF613LGV.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF785DAL bam unfiltered alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AJU, ENCFF018NEO 2068506748 ENCODE Processing Pipeline f13ca8e2385ae03d32ca48e7b392972e https://www.encodeproject.org/files/ENCFF785DAL/@@download/ENCFF785DAL.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF566SUY bam unfiltered alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AJW, ENCFF018NEO 2436865584 ENCODE Processing Pipeline d497b2b12a784c7c89afbdae15af8682 https://www.encodeproject.org/files/ENCFF566SUY/@@download/ENCFF566SUY.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF945SPR bam alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AJW, ENCFF018NEO 1755104334 ENCODE Processing Pipeline 63649fa62616cb3de200c62071bde880 https://www.encodeproject.org/files/ENCFF945SPR/@@download/ENCFF945SPR.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF411CGO bam alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AJU, ENCFF018NEO 1497398008 ENCODE Processing Pipeline 86db4f99a6e5b11ce75bb9ae00894333 https://www.encodeproject.org/files/ENCFF411CGO/@@download/ENCFF411CGO.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF456CMJ bed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399OUP, ENCFF411CGO, ENCFF863NZX 1047343 ENCODE Processing Pipeline d0bbd2e59000a617f9ec34495d64a71b https://www.encodeproject.org/files/ENCFF456CMJ/@@download/ENCFF456CMJ.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF180IGI bed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF863NZX, ENCFF945SPR 541222 ENCODE Processing Pipeline 5baa9012ab09f059fb1ea67e47df7b78 https://www.encodeproject.org/files/ENCFF180IGI/@@download/ENCFF180IGI.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF034FTU bed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF399OUP, ENCFF411CGO, ENCFF863NZX, ENCFF945SPR 856004 ENCODE Processing Pipeline f8b5334c98ea00a822ec48a1232d6297 https://www.encodeproject.org/files/ENCFF034FTU/@@download/ENCFF034FTU.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF365BZT bigBed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF456CMJ 2228606 ENCODE Processing Pipeline dc53841bacfefe0612d9e1670ff47195 https://www.encodeproject.org/files/ENCFF365BZT/@@download/ENCFF365BZT.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF559FCD bigBed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF180IGI 1253463 ENCODE Processing Pipeline f4934790eba48df34d60853a3889c481 https://www.encodeproject.org/files/ENCFF559FCD/@@download/ENCFF559FCD.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF403HJK bigBed narrowPeak peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF034FTU 2302649 ENCODE Processing Pipeline 338a2edf8c063d6e195e2902e7cee885 https://www.encodeproject.org/files/ENCFF403HJK/@@download/ENCFF403HJK.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF256ASE bigWig signal p-value ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF399OUP, ENCFF411CGO, ENCFF863NZX, ENCFF945SPR 360519754 ENCODE Processing Pipeline c8adbe8e2c1edc869e61f5efbffc561a https://www.encodeproject.org/files/ENCFF256ASE/@@download/ENCFF256ASE.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF056VJU bigWig signal p-value ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399OUP, ENCFF411CGO, ENCFF863NZX 432312659 ENCODE Processing Pipeline 7f195e51b7d933d7f42db993ca4dec9b https://www.encodeproject.org/files/ENCFF056VJU/@@download/ENCFF056VJU.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF474TDU bigWig signal p-value ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF863NZX, ENCFF945SPR 204789757 ENCODE Processing Pipeline 998c5fae83bcd52c345ffd6af2838bc1 https://www.encodeproject.org/files/ENCFF474TDU/@@download/ENCFF474TDU.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF356ZEJ bigWig fold change over control ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399OUP, ENCFF411CGO, ENCFF863NZX 441151543 ENCODE Processing Pipeline 24988425e24a113f803b1bbf23e1c49a https://www.encodeproject.org/files/ENCFF356ZEJ/@@download/ENCFF356ZEJ.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF402KOT bigWig fold change over control ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF863NZX, ENCFF945SPR 410232524 ENCODE Processing Pipeline 9a95359bc9f54a837424636965b33b4d https://www.encodeproject.org/files/ENCFF402KOT/@@download/ENCFF402KOT.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF263ROX bigWig fold change over control ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF399OUP, ENCFF411CGO, ENCFF863NZX, ENCFF945SPR 728898101 ENCODE Processing Pipeline 30327810d17e3da4645d045a451e1358 https://www.encodeproject.org/files/ENCFF263ROX/@@download/ENCFF263ROX.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF058PEK bed narrowPeak replicated peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF034FTU, ENCFF180IGI, ENCFF456CMJ 751291 ENCODE Processing Pipeline 5ba57967110e434f21183e4604cd5178 https://www.encodeproject.org/files/ENCFF058PEK/@@download/ENCFF058PEK.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF014ZKZ bigBed narrowPeak replicated peaks ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF058PEK 1759434 ENCODE Processing Pipeline 5fecaceb9f2283b551b66ac015043868 https://www.encodeproject.org/files/ENCFF014ZKZ/@@download/ENCFF014ZKZ.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF001MSR bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MSV 855381825 Ross Hardison, PennState 88db0a4233d4152742a90d42dfb7c900 https://www.encodeproject.org/files/ENCFF001MSR/@@download/ENCFF001MSR.bam mm9 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MSS bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSX 651776919 Ross Hardison, PennState b416e831c3f55da5f8323f64b42647cd https://www.encodeproject.org/files/ENCFF001MSS/@@download/ENCFF001MSS.bam mm9 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MST bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF001MTE 903803568 Ross Hardison, PennState e96ca67fc1416395167882e9741c39eb https://www.encodeproject.org/files/ENCFF001MST/@@download/ENCFF001MST.bam mm9 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MSU bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFY 203306 Ross Hardison, PennState cb9e091aac4a56a364848109989b6117 https://www.encodeproject.org/files/ENCFF001MSU/@@download/ENCFF001MSU.bigBed mm9 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MSV fastq reads ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 672292682 Ross Hardison, PennState 4ce38cf1ae9c5e5fb411592cd025479a https://www.encodeproject.org/files/ENCFF001MSV/@@download/ENCFF001MSV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MSX fastq reads ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 558797102 Ross Hardison, PennState c71e503a65e500f1e10bcabf977170fd https://www.encodeproject.org/files/ENCFF001MSX/@@download/ENCFF001MSX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ archived low read length, inconsistent platforms, inconsistent control read length, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MSY bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFZ 182751 Ross Hardison, PennState ec103aa7fea7efdcd5ae9c4b5f6b2363 https://www.encodeproject.org/files/ENCFF001MSY/@@download/ENCFF001MSY.bigBed mm9 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MSZ bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGA 123626 Ross Hardison, PennState eb90534ddc8971edf93f5dd4ffa99dd5 https://www.encodeproject.org/files/ENCFF001MSZ/@@download/ENCFF001MSZ.bigBed mm9 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MTA bigBed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 ENCFF001YGB 114710 Ross Hardison, PennState 011a62e71490d921b3b93dec02766fa9 https://www.encodeproject.org/files/ENCFF001MTA/@@download/ENCFF001MTA.bigBed mm9 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MTB bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1339051693 Ross Hardison, PennState 54722071ab74c8b9c9c964ee183177ac https://www.encodeproject.org/files/ENCFF001MTB/@@download/ENCFF001MTB.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF001MTC bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1016254894 Ross Hardison, PennState a66420897156cd8846e4e8a748e7961c https://www.encodeproject.org/files/ENCFF001MTC/@@download/ENCFF001MTC.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF001MTD bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 2155159371 Ross Hardison, PennState 37be3b4b1b58fce322245f1e6788e6c7 https://www.encodeproject.org/files/ENCFF001MTD/@@download/ENCFF001MTD.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF001MTE fastq reads ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 36 single-ended 757932126 Ross Hardison, PennState 4351f9ccd2005630d560b7bb33d153ec https://www.encodeproject.org/files/ENCFF001MTE/@@download/ENCFF001MTE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released low read length, inconsistent platforms, inconsistent control read length, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001MTF bigWig signal ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 5005431295 Ross Hardison, PennState f7aca7d79fa7ed23bcff16f490472d37 https://www.encodeproject.org/files/ENCFF001MTF/@@download/ENCFF001MTF.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF001YFY bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 93171 Ross Hardison, PennState b053e22347759caa8b5fba90e12d4096 https://www.encodeproject.org/files/ENCFF001YFY/@@download/ENCFF001YFY.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF001YFZ bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 69681 Ross Hardison, PennState 0009f1dee7b3fddb061d658319f98ab8 https://www.encodeproject.org/files/ENCFF001YFZ/@@download/ENCFF001YFZ.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF001YGA bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 51409 Ross Hardison, PennState a8cab9c6ed4244ccce3dd15bd0f257ff https://www.encodeproject.org/files/ENCFF001YGA/@@download/ENCFF001YGA.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF001YGB bed broadPeak peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 33142 Ross Hardison, PennState 80dfb3aec259405a3001df9cc063dd9c https://www.encodeproject.org/files/ENCFF001YGB/@@download/ENCFF001YGB.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, missing raw data in replicate, biological replicates with identical biosample ENCFF922YTP bam unfiltered alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSX, ENCFF018NEO 686683348 ENCODE Processing Pipeline e63ced501b812471e0b5f7e315e2a099 https://www.encodeproject.org/files/ENCFF922YTP/@@download/ENCFF922YTP.bam mm10 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF276KNK bam unfiltered alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSV, ENCFF018NEO 896825632 ENCODE Processing Pipeline d0fb942eff4aaee971d903dbeb0b819d https://www.encodeproject.org/files/ENCFF276KNK/@@download/ENCFF276KNK.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF576GPR bam unfiltered alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 36 ENCFF001MTE, ENCFF018NEO 967846450 ENCODE Processing Pipeline b3953b735eb7e72f8055dd78e86643b1 https://www.encodeproject.org/files/ENCFF576GPR/@@download/ENCFF576GPR.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF300WKN bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSX, ENCFF018NEO 455501040 ENCODE Processing Pipeline 3d140f37db93168f48de777e20592a80 https://www.encodeproject.org/files/ENCFF300WKN/@@download/ENCFF300WKN.bam mm10 archived low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF240VBR bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSV, ENCFF018NEO 599735261 ENCODE Processing Pipeline f2b99ba6bb9a17175d389cc0c53d4c67 https://www.encodeproject.org/files/ENCFF240VBR/@@download/ENCFF240VBR.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF515WNW bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 36 ENCFF001MTE, ENCFF018NEO 676725902 ENCODE Processing Pipeline d4f99a104babf80d436da7d8b77a7c2b https://www.encodeproject.org/files/ENCFF515WNW/@@download/ENCFF515WNW.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF999YXW bigWig signal p-value ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF240VBR, ENCFF383IWZ, ENCFF676LVI 816129516 ENCODE Processing Pipeline 25a72794edd1a07a5aa4f4c8123eb6b9 https://www.encodeproject.org/files/ENCFF999YXW/@@download/ENCFF999YXW.bigWig mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF077NGU bigWig signal p-value ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 941672366 ENCODE Processing Pipeline 6c135b198c806f1111d74acee32f19a9 https://www.encodeproject.org/files/ENCFF077NGU/@@download/ENCFF077NGU.bigWig mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF906DTO bigWig signal p-value ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF240VBR, ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 999222249 ENCODE Processing Pipeline 94482cf75ecd56867d81cc52a8d56be5 https://www.encodeproject.org/files/ENCFF906DTO/@@download/ENCFF906DTO.bigWig mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF025ZSL bigWig fold change over control ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF240VBR, ENCFF383IWZ, ENCFF676LVI 645485031 ENCODE Processing Pipeline 67331dcc42479f7aab22798e241172be https://www.encodeproject.org/files/ENCFF025ZSL/@@download/ENCFF025ZSL.bigWig mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF700NKA bigWig fold change over control ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 773160120 ENCODE Processing Pipeline 51b46a09064a8ebe421731e708ff0ef2 https://www.encodeproject.org/files/ENCFF700NKA/@@download/ENCFF700NKA.bigWig mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF140BEA bigBed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF832MGP 12911521 ENCODE Processing Pipeline f8c3b11c9a5a520b728bc024a9a8b975 https://www.encodeproject.org/files/ENCFF140BEA/@@download/ENCFF140BEA.bigBed mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF754BDS bigWig fold change over control ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF240VBR, ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 1034254770 ENCODE Processing Pipeline 18041ed3c73d9cf262d87c9a12ef0069 https://www.encodeproject.org/files/ENCFF754BDS/@@download/ENCFF754BDS.bigWig mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF832MGP bed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF240VBR, ENCFF383IWZ, ENCFF676LVI 6294711 ENCODE Processing Pipeline 93fe5d37495b6218520404b957bcd869 https://www.encodeproject.org/files/ENCFF832MGP/@@download/ENCFF832MGP.bed.gz mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF157PDK bed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF240VBR, ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 6859818 ENCODE Processing Pipeline 528d4eaa3a74ccef8f3890ca62290a19 https://www.encodeproject.org/files/ENCFF157PDK/@@download/ENCFF157PDK.bed.gz mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF896LWK bigBed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF157PDK 13115157 ENCODE Processing Pipeline e4f2c47a40e19b4e60fa321d74b553a8 https://www.encodeproject.org/files/ENCFF896LWK/@@download/ENCFF896LWK.bigBed mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF223DYF bed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF383IWZ, ENCFF515WNW, ENCFF676LVI 6064555 ENCODE Processing Pipeline fed4006b45f231cbef29fd1746f13efe https://www.encodeproject.org/files/ENCFF223DYF/@@download/ENCFF223DYF.bed.gz mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF055LAC bigBed narrowPeak peaks and background as input for IDR ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF223DYF 13239046 ENCODE Processing Pipeline 866e5cdadf74cb67c2e9c3cf22834ff8 https://www.encodeproject.org/files/ENCFF055LAC/@@download/ENCFF055LAC.bigBed mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF726JZY bed narrowPeak conservative idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF157PDK, ENCFF223DYF, ENCFF547MET, ENCFF832MGP 10045 ENCODE Processing Pipeline 81f025f595c2b89f59ac31465fcda10d https://www.encodeproject.org/files/ENCFF726JZY/@@download/ENCFF726JZY.bed.gz mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF267LBA bed narrowPeak optimal idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF157PDK, ENCFF223DYF, ENCFF547MET, ENCFF832MGP 13967 ENCODE Processing Pipeline 16b8ba3ddd006eb0e9cf4db606eff289 https://www.encodeproject.org/files/ENCFF267LBA/@@download/ENCFF267LBA.bed.gz mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF336ZZG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF726JZY 86997 ENCODE Processing Pipeline c9bf253a1c861f7b5ea3b3650ec82350 https://www.encodeproject.org/files/ENCFF336ZZG/@@download/ENCFF336ZZG.bigBed mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF231SPR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 3 ENCFF267LBA 96137 ENCODE Processing Pipeline e2b01fab0932a0fb1f66cb3308cbde66 https://www.encodeproject.org/files/ENCFF231SPR/@@download/ENCFF231SPR.bigBed mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF001KHL bam alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KHU 712573686 Bing Ren, UCSD 24030792213fe1acbc70afc5bc797d1e https://www.encodeproject.org/files/ENCFF001KHL/@@download/ENCFF001KHL.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KHM bigBed broadPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XXH 1780770 Bing Ren, UCSD ab4698f1ad02a736f39fdf677ef5fce8 https://www.encodeproject.org/files/ENCFF001KHM/@@download/ENCFF001KHM.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KHN bam alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KHX 843075404 Bing Ren, UCSD 33dedb1222a13d9c0971fa3596f036d4 https://www.encodeproject.org/files/ENCFF001KHN/@@download/ENCFF001KHN.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KHP bigWig signal ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KHL, ENCFF001KHN 50227266 Bing Ren, UCSD 366ed2e80888341b004ae6c8aef4c9eb https://www.encodeproject.org/files/ENCFF001KHP/@@download/ENCFF001KHP.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KHU fastq reads ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 947923520 Bing Ren, UCSD a769ef685d7e4f5d9eed09a98e0dddde https://www.encodeproject.org/files/ENCFF001KHU/@@download/ENCFF001KHU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length insufficient read depth, control insufficient read depth ENCFF001KHX fastq reads ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 923360263 Bing Ren, UCSD d3dfba636458ad7b0c82d7b673d1c6b2 https://www.encodeproject.org/files/ENCFF001KHX/@@download/ENCFF001KHX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length insufficient read depth, control insufficient read depth ENCFF001XXH bed broadPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KHL, ENCFF001KHN 980498 Bing Ren, UCSD f0cba63b24c32febfa5dbebb087cab12 https://www.encodeproject.org/files/ENCFF001XXH/@@download/ENCFF001XXH.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF745GWP bam unfiltered alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KHX, ENCFF018NEO 1069058761 ENCODE Processing Pipeline efcc8fc7d7e209cdb1361b6661c2df15 https://www.encodeproject.org/files/ENCFF745GWP/@@download/ENCFF745GWP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF781QYH bam unfiltered alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KHU, ENCFF018NEO 1041631092 ENCODE Processing Pipeline fb18482e9d7a797c1455f2498f2b55f4 https://www.encodeproject.org/files/ENCFF781QYH/@@download/ENCFF781QYH.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF652LCP bam alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KHX, ENCFF018NEO 804354208 ENCODE Processing Pipeline 740ae682a96b6929a1c4534b8c11434a https://www.encodeproject.org/files/ENCFF652LCP/@@download/ENCFF652LCP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF897EBQ bam alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KHU, ENCFF018NEO 680633129 ENCODE Processing Pipeline affe1649088b403cbc78e607e6b04522 https://www.encodeproject.org/files/ENCFF897EBQ/@@download/ENCFF897EBQ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF184SAJ bed narrowPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF897EBQ 3799203 ENCODE Processing Pipeline c54e6baf37afe98e9ccd02336a90273b https://www.encodeproject.org/files/ENCFF184SAJ/@@download/ENCFF184SAJ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF163PGG bed narrowPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF262EEH, ENCFF465PJQ, ENCFF652LCP, ENCFF897EBQ 2827922 ENCODE Processing Pipeline 7f68765b16fb5014433e72f958420230 https://www.encodeproject.org/files/ENCFF163PGG/@@download/ENCFF163PGG.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF996NER bed narrowPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF262EEH, ENCFF465PJQ, ENCFF652LCP 2809220 ENCODE Processing Pipeline a3912db8aa9e8c4cdefbedf74d642669 https://www.encodeproject.org/files/ENCFF996NER/@@download/ENCFF996NER.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF448SWE bigBed narrowPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF184SAJ 8452641 ENCODE Processing Pipeline 8821d809f7fd93fd37050aca123f7893 https://www.encodeproject.org/files/ENCFF448SWE/@@download/ENCFF448SWE.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF762TFE bigBed narrowPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF163PGG 7982434 ENCODE Processing Pipeline 9cc56fecee3de1b3eaf678eda3c0dce6 https://www.encodeproject.org/files/ENCFF762TFE/@@download/ENCFF762TFE.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF531ZND bigBed narrowPeak peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF996NER 8033512 ENCODE Processing Pipeline a9390733b63972d2558853da8aed2875 https://www.encodeproject.org/files/ENCFF531ZND/@@download/ENCFF531ZND.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF503WST bigWig signal p-value ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF897EBQ 308608494 ENCODE Processing Pipeline 4f78c3cf78ed133c8e2a593a98c4861a https://www.encodeproject.org/files/ENCFF503WST/@@download/ENCFF503WST.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF419SWA bigWig signal p-value ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF262EEH, ENCFF465PJQ, ENCFF652LCP, ENCFF897EBQ 377522625 ENCODE Processing Pipeline 2321e82763ba89c2f67e369b9195a9af https://www.encodeproject.org/files/ENCFF419SWA/@@download/ENCFF419SWA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF934CMI bigWig signal p-value ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF262EEH, ENCFF465PJQ, ENCFF652LCP 384748876 ENCODE Processing Pipeline 348ce0297cc92fe733bf336cafcf0c78 https://www.encodeproject.org/files/ENCFF934CMI/@@download/ENCFF934CMI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF642JAK bigWig fold change over control ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF897EBQ 268479695 ENCODE Processing Pipeline 8bd0c7f7b466bb763e147f995b3ddc09 https://www.encodeproject.org/files/ENCFF642JAK/@@download/ENCFF642JAK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF703NNX bigWig fold change over control ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF262EEH, ENCFF465PJQ, ENCFF652LCP 391633170 ENCODE Processing Pipeline 13311752b33c85b8e16bca51818bfd3e https://www.encodeproject.org/files/ENCFF703NNX/@@download/ENCFF703NNX.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF021EDM bigWig fold change over control ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF262EEH, ENCFF465PJQ, ENCFF652LCP, ENCFF897EBQ 551546411 ENCODE Processing Pipeline 108dfce63ef9c975aa6a03e283d4fc9a https://www.encodeproject.org/files/ENCFF021EDM/@@download/ENCFF021EDM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF481GRM bed narrowPeak replicated peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF163PGG, ENCFF184SAJ, ENCFF996NER 3112395 ENCODE Processing Pipeline ef2ee5bf25905ce3d3d316c95682b681 https://www.encodeproject.org/files/ENCFF481GRM/@@download/ENCFF481GRM.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF642LDZ bigBed narrowPeak replicated peaks ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF481GRM 6548519 ENCODE Processing Pipeline 486539dd202c9872f11cdcb2a8f2cff6 https://www.encodeproject.org/files/ENCFF642LDZ/@@download/ENCFF642LDZ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001KMO bigBed broadPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXY 1455013 Bing Ren, UCSD 61f22ba38f33b487c80682ac05fc7a9d https://www.encodeproject.org/files/ENCFF001KMO/@@download/ENCFF001KMO.bigBed mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMP bam alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KMZ 1609245733 Bing Ren, UCSD 48e691ae6ff0bf1c5265539b56003e0a https://www.encodeproject.org/files/ENCFF001KMP/@@download/ENCFF001KMP.bam mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMQ bam alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KMY 1876560634 Bing Ren, UCSD 251e5780540df7ffb9ffe26ab3d1a4c0 https://www.encodeproject.org/files/ENCFF001KMQ/@@download/ENCFF001KMQ.bam mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMR bigWig signal ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KMP, ENCFF001KMQ 54224240 Bing Ren, UCSD dcca98ce0ab4c23527738e14ab2615f1 https://www.encodeproject.org/files/ENCFF001KMR/@@download/ENCFF001KMR.bigWig mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMY fastq reads ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 1803243877 Bing Ren, UCSD 34999e805d94cb96053916d057eb5b62 https://www.encodeproject.org/files/ENCFF001KMY/@@download/ENCFF001KMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNX/ released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMZ fastq reads ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1531498682 Bing Ren, UCSD fcd552e52ebcffab35c75c3253cb936f https://www.encodeproject.org/files/ENCFF001KMZ/@@download/ENCFF001KMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNY/ released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XXY bed broadPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KMP, ENCFF001KMQ 1085517 Bing Ren, UCSD 6306906f4a085ec9530d237390ffdbba https://www.encodeproject.org/files/ENCFF001XXY/@@download/ENCFF001XXY.bed.gz mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF556UHV bam unfiltered alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMZ, ENCFF018NEO 1702490427 ENCODE Processing Pipeline bfaf96cc24c8ada7739166b9b5fd9279 https://www.encodeproject.org/files/ENCFF556UHV/@@download/ENCFF556UHV.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF899OVA bam unfiltered alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMY, ENCFF018NEO 1963263798 ENCODE Processing Pipeline 67ed915fb69fb976de2e5fd5a738075d https://www.encodeproject.org/files/ENCFF899OVA/@@download/ENCFF899OVA.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF730GII bam alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMZ, ENCFF018NEO 885679844 ENCODE Processing Pipeline 8cc344d7405c2a4c3db24f04249fb534 https://www.encodeproject.org/files/ENCFF730GII/@@download/ENCFF730GII.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF591CDW bam alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMY, ENCFF018NEO 1038095529 ENCODE Processing Pipeline 88c47f34b9f8cd0a64bb8a1d44df5f63 https://www.encodeproject.org/files/ENCFF591CDW/@@download/ENCFF591CDW.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF632JAR bed narrowPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF591CDW 3596815 ENCODE Processing Pipeline d9be39cc2701cf0553758650eeeee72f https://www.encodeproject.org/files/ENCFF632JAR/@@download/ENCFF632JAR.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF648TZB bed narrowPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF591CDW, ENCFF730GII 3091876 ENCODE Processing Pipeline 5719846d55b9318c3f7ab4319b38f94c https://www.encodeproject.org/files/ENCFF648TZB/@@download/ENCFF648TZB.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF123QFB bed narrowPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF730GII 3244045 ENCODE Processing Pipeline af18d338d14eea3dfe0ced40affa8f2d https://www.encodeproject.org/files/ENCFF123QFB/@@download/ENCFF123QFB.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF991MRG bigBed narrowPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF632JAR 8089967 ENCODE Processing Pipeline 8f9c763a0a7671be684e6e8c1163afd0 https://www.encodeproject.org/files/ENCFF991MRG/@@download/ENCFF991MRG.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF954HOB bigBed narrowPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF648TZB 6984174 ENCODE Processing Pipeline 903b242a21c96d480f8f7428f00c2232 https://www.encodeproject.org/files/ENCFF954HOB/@@download/ENCFF954HOB.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF818UFO bigBed narrowPeak peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF123QFB 6144049 ENCODE Processing Pipeline 9baaf60c29ced65dc5d2ae51cadb9a6c https://www.encodeproject.org/files/ENCFF818UFO/@@download/ENCFF818UFO.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF009DJJ bigWig signal p-value ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF591CDW 402398092 ENCODE Processing Pipeline c7a074ceb1e9e85f0a85de7410fc30d7 https://www.encodeproject.org/files/ENCFF009DJJ/@@download/ENCFF009DJJ.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF676VZC bigWig signal p-value ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF730GII 336934517 ENCODE Processing Pipeline c4fe66a0a0349a6757501c8d8ba784d6 https://www.encodeproject.org/files/ENCFF676VZC/@@download/ENCFF676VZC.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF415DDX bigWig signal p-value ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF591CDW, ENCFF730GII 414248226 ENCODE Processing Pipeline 60e74827781116d687b7e2fdd7ed6c83 https://www.encodeproject.org/files/ENCFF415DDX/@@download/ENCFF415DDX.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF819AKM bigWig fold change over control ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF730GII 333065974 ENCODE Processing Pipeline 6f98d91534985141b86f3aba0fe0b39c https://www.encodeproject.org/files/ENCFF819AKM/@@download/ENCFF819AKM.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF291SWM bigWig fold change over control ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF591CDW 344636011 ENCODE Processing Pipeline 4104342b4a359d2c6c1a81961c9bfee1 https://www.encodeproject.org/files/ENCFF291SWM/@@download/ENCFF291SWM.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF093JJJ bigWig fold change over control ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF591CDW, ENCFF730GII 562524427 ENCODE Processing Pipeline 4fa8c35afd904463dc77feed41881e57 https://www.encodeproject.org/files/ENCFF093JJJ/@@download/ENCFF093JJJ.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF718JST bed narrowPeak replicated peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF123QFB, ENCFF632JAR, ENCFF648TZB 3578728 ENCODE Processing Pipeline 9272950951ea888b359e1b0c2fb34178 https://www.encodeproject.org/files/ENCFF718JST/@@download/ENCFF718JST.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF338EZE bigBed narrowPeak replicated peaks ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF718JST 6290906 ENCODE Processing Pipeline f4a4d51fabf4d9a9047f4800a0dba0f5 https://www.encodeproject.org/files/ENCFF338EZE/@@download/ENCFF338EZE.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KKW bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 1118182709 Bing Ren, UCSD d6e1c923d7e55ecf23425c495bca8b99 https://www.encodeproject.org/files/ENCFF001KKW/@@download/ENCFF001KKW.bam mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth missing derived_from, out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001KKX bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KLI 337260914 Bing Ren, UCSD 949ca02244a4ca6e225975d1797a43d6 https://www.encodeproject.org/files/ENCFF001KKX/@@download/ENCFF001KKX.bam mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001KLB bigWig signal ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KKX 69401920 Bing Ren, UCSD d0e458f216010b16ed7d0b31a607c4f0 https://www.encodeproject.org/files/ENCFF001KLB/@@download/ENCFF001KLB.bigWig mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001KLI fastq reads ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 344882193 Bing Ren, UCSD 3d32e79a3258396a61db1f004ef482b1 https://www.encodeproject.org/files/ENCFF001KLI/@@download/ENCFF001KLI.fastq.gz Illumina Genome Analyzer II archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001KMA fastq reads ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1250461149 Bing Ren, UCSD e867efa3f6926a0d6f63ed723835090a https://www.encodeproject.org/files/ENCFF001KMA/@@download/ENCFF001KMA.fastq.gz Illumina Genome Analyzer II archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLU bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 ENCFF044CWG 735186177 Bing Ren, UCSD abc17c7a6bc591c315657e5361ba7b55 https://www.encodeproject.org/files/ENCFF001LLU/@@download/ENCFF001LLU.bam mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF332QPA bam unfiltered alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KLI, ENCFF806TVZ 363353388 J. Michael Cherry, Stanford e099b6eb0de4a01e98d09ad428edddfb https://www.encodeproject.org/files/ENCFF332QPA/@@download/ENCFF332QPA.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF694MOX bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KLI, ENCFF001KMA 1464499224 J. Michael Cherry, Stanford c717dca4234d360405aa9e4a81387b47 https://www.encodeproject.org/files/ENCFF694MOX/@@download/ENCFF694MOX.bam mm10 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF435SEY bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KLI, ENCFF806TVZ 106820155 J. Michael Cherry, Stanford 59bd0291d203d5870486ac9d44160f59 https://www.encodeproject.org/files/ENCFF435SEY/@@download/ENCFF435SEY.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF044CWG fastq reads ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 674680573 Bing Ren, UCSD 2537cf67291ce6dfa734a16dc41eb4f2 https://www.encodeproject.org/files/ENCFF044CWG/@@download/ENCFF044CWG.fastq.gz Illumina Genome Analyzer II archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF688WNM bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001KLI, ENCFF018NEO 106789983 ENCODE Processing Pipeline b66532d434014c5a449d85ba1c26574f https://www.encodeproject.org/files/ENCFF688WNM/@@download/ENCFF688WNM.bam mm10 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF380OBK bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF018NEO, ENCFF044CWG 526490583 ENCODE Processing Pipeline 08398052d0ae957672cac043227924b4 https://www.encodeproject.org/files/ENCFF380OBK/@@download/ENCFF380OBK.bam mm10 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF785RSZ bam unfiltered alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001KLI, ENCFF018NEO 363572455 ENCODE Processing Pipeline a42ad8667d705bdf33b93d7f29e4a7cc https://www.encodeproject.org/files/ENCFF785RSZ/@@download/ENCFF785RSZ.bam mm10 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF921MQF bam unfiltered alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF018NEO, ENCFF044CWG 824531489 ENCODE Processing Pipeline e11b9edd7120e65324f7cfa32962a5e6 https://www.encodeproject.org/files/ENCFF921MQF/@@download/ENCFF921MQF.bam mm10 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF537SBV bam unfiltered alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF018NEO, ENCFF044CWG 768266816 ENCODE Processing Pipeline 32888c92deb53945c709c5775317faae https://www.encodeproject.org/files/ENCFF537SBV/@@download/ENCFF537SBV.bam mm10 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF420EJF bam alignments ENCSR000CCP ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF018NEO, ENCFF044CWG 470352049 ENCODE Processing Pipeline 35e6bbdfb2bf09ddf7af20cad05a83e7 https://www.encodeproject.org/files/ENCFF420EJF/@@download/ENCFF420EJF.bam mm10 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth out of date analysis severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001KQU bigBed broadPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYN 886033 Bing Ren, UCSD f2f93d73448d136557ab9dd6f5f7fda6 https://www.encodeproject.org/files/ENCFF001KQU/@@download/ENCFF001KQU.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KQV bam alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KRD 1012695859 Bing Ren, UCSD 9ec8664a1d1e09b3d24bb9002eafecbb https://www.encodeproject.org/files/ENCFF001KQV/@@download/ENCFF001KQV.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KQW bam alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KRE 793119700 Bing Ren, UCSD 71f600b3f660002014f99ce206d26448 https://www.encodeproject.org/files/ENCFF001KQW/@@download/ENCFF001KQW.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KQX bigWig signal ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KQV, ENCFF001KQW 63763320 Bing Ren, UCSD 52efb16df67e82f56039ab4471fa7065 https://www.encodeproject.org/files/ENCFF001KQX/@@download/ENCFF001KQX.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KRD fastq reads ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 1000608223 Bing Ren, UCSD 6b0a6d6fab8587ce99c96b4c103e2057 https://www.encodeproject.org/files/ENCFF001KRD/@@download/ENCFF001KRD.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KRE fastq reads ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 861299676 Bing Ren, UCSD 0bd99e1a408f9cfa0699e21c2fd2b90c https://www.encodeproject.org/files/ENCFF001KRE/@@download/ENCFF001KRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF001XYN bed broadPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KQV, ENCFF001KQW 532904 Bing Ren, UCSD 7af28c96f212398de2b55b1e0c711fd4 https://www.encodeproject.org/files/ENCFF001XYN/@@download/ENCFF001XYN.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF101GTE bam unfiltered alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRE, ENCFF018NEO 824121541 ENCODE Processing Pipeline ad3da7b00fef05b3d53c6ae6b82fbd2d https://www.encodeproject.org/files/ENCFF101GTE/@@download/ENCFF101GTE.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF419CBG bam unfiltered alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRD, ENCFF018NEO 1084272066 ENCODE Processing Pipeline 9d89d7ad8fc0d68eccfe5179a94bd625 https://www.encodeproject.org/files/ENCFF419CBG/@@download/ENCFF419CBG.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF562JLO bam alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRE, ENCFF018NEO 258934394 ENCODE Processing Pipeline 0b0e3bfb63114577fbd2867d0a9a86b8 https://www.encodeproject.org/files/ENCFF562JLO/@@download/ENCFF562JLO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF804ERN bam alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRD, ENCFF018NEO 553067281 ENCODE Processing Pipeline 3fb2d4eac086e17ec436ba733a40c1b7 https://www.encodeproject.org/files/ENCFF804ERN/@@download/ENCFF804ERN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF730RDQ bed narrowPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF562JLO, ENCFF780TFB, ENCFF804ERN 1529481 ENCODE Processing Pipeline 946f38c04152cd77fb67eb747bb1f953 https://www.encodeproject.org/files/ENCFF730RDQ/@@download/ENCFF730RDQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF658UXN bed narrowPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF804ERN 1926077 ENCODE Processing Pipeline edc770d21af0e3bbe7c6e1512885aeb9 https://www.encodeproject.org/files/ENCFF658UXN/@@download/ENCFF658UXN.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF170TBE bigBed narrowPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF546QUM 4216948 ENCODE Processing Pipeline a8f617cc4bf5e455af9a0c40d8007d7c https://www.encodeproject.org/files/ENCFF170TBE/@@download/ENCFF170TBE.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF546QUM bed narrowPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF562JLO, ENCFF780TFB 1940099 ENCODE Processing Pipeline fc3b011463c2e4b79c28fcacebaff067 https://www.encodeproject.org/files/ENCFF546QUM/@@download/ENCFF546QUM.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF657RXX bigBed narrowPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF658UXN 4755700 ENCODE Processing Pipeline ee19acdced5af94a7bd9ad347d7e1ece https://www.encodeproject.org/files/ENCFF657RXX/@@download/ENCFF657RXX.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF278KBX bigBed narrowPeak peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF730RDQ 3642593 ENCODE Processing Pipeline 3cbd8c9ef327d9fed7f958accce45d21 https://www.encodeproject.org/files/ENCFF278KBX/@@download/ENCFF278KBX.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF704YDN bigWig signal p-value ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF804ERN 286293321 ENCODE Processing Pipeline ecc6d3715da5388bd70ebed75008249f https://www.encodeproject.org/files/ENCFF704YDN/@@download/ENCFF704YDN.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF104UPC bigWig signal p-value ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF562JLO, ENCFF780TFB 137293851 ENCODE Processing Pipeline f070fada688e815e93ee1d9fa61de373 https://www.encodeproject.org/files/ENCFF104UPC/@@download/ENCFF104UPC.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF397WSQ bigWig signal p-value ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF562JLO, ENCFF780TFB, ENCFF804ERN 316247640 ENCODE Processing Pipeline 6f41202c668f304c06fd27d8bf4ad975 https://www.encodeproject.org/files/ENCFF397WSQ/@@download/ENCFF397WSQ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF348GLI bigWig fold change over control ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF562JLO, ENCFF780TFB 93366848 ENCODE Processing Pipeline fd94ac30c8dde4d009482cb76b1a8b50 https://www.encodeproject.org/files/ENCFF348GLI/@@download/ENCFF348GLI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF081NXB bigWig fold change over control ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF780TFB, ENCFF804ERN 222413492 ENCODE Processing Pipeline 12820587d9a4050a998e14aa907b4ded https://www.encodeproject.org/files/ENCFF081NXB/@@download/ENCFF081NXB.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF279GJP bigWig fold change over control ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF562JLO, ENCFF780TFB, ENCFF804ERN 296506141 ENCODE Processing Pipeline 7e6ea3156f68bf169d0ce37886d43955 https://www.encodeproject.org/files/ENCFF279GJP/@@download/ENCFF279GJP.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF379GLU bed narrowPeak replicated peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF546QUM, ENCFF658UXN, ENCFF730RDQ 1700755 ENCODE Processing Pipeline 47d0afb5b6b2ac302d6ac8fda8dfe6a4 https://www.encodeproject.org/files/ENCFF379GLU/@@download/ENCFF379GLU.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF248VFL bigBed narrowPeak replicated peaks ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF379GLU 3012491 ENCODE Processing Pipeline 2a53b8a2ed24bd45aaa5ed07dd40400f https://www.encodeproject.org/files/ENCFF248VFL/@@download/ENCFF248VFL.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF001MBB bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MBK 1207500343 Ross Hardison, PennState 82a8e4b453159e97462fb29d027c08d1 https://www.encodeproject.org/files/ENCFF001MBB/@@download/ENCFF001MBB.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBC bigBed broadPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDD 4241788 Ross Hardison, PennState 35f9c01c0bc1d5c6b5d7131150675641 https://www.encodeproject.org/files/ENCFF001MBC/@@download/ENCFF001MBC.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBD bigBed broadPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDE 3213255 Ross Hardison, PennState ead5704015bd491ea92dadc01989a4f3 https://www.encodeproject.org/files/ENCFF001MBD/@@download/ENCFF001MBD.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBE bigBed broadPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDF 4164826 Ross Hardison, PennState 3cd0eab83c02b2f517c6daf5fc82d79d https://www.encodeproject.org/files/ENCFF001MBE/@@download/ENCFF001MBE.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBF bigWig signal ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 3471614675 Ross Hardison, PennState b324721c73b387e6989b7594c12cb830 https://www.encodeproject.org/files/ENCFF001MBF/@@download/ENCFF001MBF.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MBG bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MBU 5882599033 Ross Hardison, PennState c4e8735b1cb4645a51fd7abadf1b8833 https://www.encodeproject.org/files/ENCFF001MBG/@@download/ENCFF001MBG.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBH bigWig signal ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5352742188 Ross Hardison, PennState 4555dc57db258bd91e150ffa3538ff58 https://www.encodeproject.org/files/ENCFF001MBH/@@download/ENCFF001MBH.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MBI bigWig signal ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 5685943733 Ross Hardison, PennState 73b1ba09039a4a4ad4f0dfa64360b3ed https://www.encodeproject.org/files/ENCFF001MBI/@@download/ENCFF001MBI.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MBK fastq reads ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 36 single-ended 960171710 Ross Hardison, PennState ea3c3eeae2cf6a352f316e68f6795caa https://www.encodeproject.org/files/ENCFF001MBK/@@download/ENCFF001MBK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBU fastq reads ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 5520295872 Ross Hardison, PennState 4cfede6763c10ff5aa97e9df2712fb8e https://www.encodeproject.org/files/ENCFF001MBU/@@download/ENCFF001MBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSW/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001YDD bed broadPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2127372 Ross Hardison, PennState 5deed49d7612e5c970de6ef619766c16 https://www.encodeproject.org/files/ENCFF001YDD/@@download/ENCFF001YDD.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDE bed broadPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1137215 Ross Hardison, PennState 6de0d748630eec7ad4d5674beadffc37 https://www.encodeproject.org/files/ENCFF001YDE/@@download/ENCFF001YDE.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDF bed broadPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 2021236 Ross Hardison, PennState cb1ff86ef636cf989cec9ea64dafaad9 https://www.encodeproject.org/files/ENCFF001YDF/@@download/ENCFF001YDF.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF870OZF bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MBU, ENCFF806TVZ 4458485127 ENCODE Processing Pipeline 60c6d195104e15b1d2810af4250df253 https://www.encodeproject.org/files/ENCFF870OZF/@@download/ENCFF870OZF.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF820HBQ bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MBK, ENCFF806TVZ 970817090 ENCODE Processing Pipeline 0b8d41e528c5d5f354d860b5cba2e836 https://www.encodeproject.org/files/ENCFF820HBQ/@@download/ENCFF820HBQ.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF810GMA bam unfiltered alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MBK, ENCFF018NEO 1259672819 ENCODE Processing Pipeline ae6404219373857cdd342b679fbd4194 https://www.encodeproject.org/files/ENCFF810GMA/@@download/ENCFF810GMA.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF408QJU bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MBK, ENCFF018NEO 970586413 ENCODE Processing Pipeline c2a4c833a12fd749a59279d1b21d0d3f https://www.encodeproject.org/files/ENCFF408QJU/@@download/ENCFF408QJU.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF494PCO bam unfiltered alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MBU, ENCFF018NEO 4706941047 ENCODE Processing Pipeline 68c1197356644ed29950e47f40a57395 https://www.encodeproject.org/files/ENCFF494PCO/@@download/ENCFF494PCO.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF774DMF bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MBU, ENCFF018NEO 3440814145 ENCODE Processing Pipeline 6b50e4785346dc41ba237014b21cb244 https://www.encodeproject.org/files/ENCFF774DMF/@@download/ENCFF774DMF.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF435IRJ bed narrowPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF774DMF 7823400 ENCODE Processing Pipeline 93bff350c7b585cb2bd0d73a3ed54aa5 https://www.encodeproject.org/files/ENCFF435IRJ/@@download/ENCFF435IRJ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF250VMQ bed narrowPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF383IWZ, ENCFF408QJU, ENCFF676LVI, ENCFF774DMF 7665037 ENCODE Processing Pipeline cbb936302d724d6e4a692d5d597307ba https://www.encodeproject.org/files/ENCFF250VMQ/@@download/ENCFF250VMQ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF600GKG bigBed narrowPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF786NZZ 13550720 ENCODE Processing Pipeline a107b174d32a2bb1ca6e9166955d7c93 https://www.encodeproject.org/files/ENCFF600GKG/@@download/ENCFF600GKG.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF928TAZ bigBed narrowPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF435IRJ 19592475 ENCODE Processing Pipeline f8d91b3a32da823e5877c659e51efc82 https://www.encodeproject.org/files/ENCFF928TAZ/@@download/ENCFF928TAZ.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF786NZZ bed narrowPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF383IWZ, ENCFF408QJU, ENCFF676LVI 5571875 ENCODE Processing Pipeline 759b2ffa3971aa1505ae5a6ea6fc6714 https://www.encodeproject.org/files/ENCFF786NZZ/@@download/ENCFF786NZZ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF936WPF bigBed narrowPeak peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF250VMQ 18940183 ENCODE Processing Pipeline 2100df0051712c24c59faaaedfe25486 https://www.encodeproject.org/files/ENCFF936WPF/@@download/ENCFF936WPF.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF812HOY bigWig signal p-value ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF383IWZ, ENCFF408QJU, ENCFF676LVI 838693880 ENCODE Processing Pipeline 1b8946dc964ddc6aea43f1bf329cf9b6 https://www.encodeproject.org/files/ENCFF812HOY/@@download/ENCFF812HOY.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF810TRT bigWig signal p-value ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF774DMF 1582450917 ENCODE Processing Pipeline 752d75a199f160cf99221af058fdaa40 https://www.encodeproject.org/files/ENCFF810TRT/@@download/ENCFF810TRT.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF550WZE bigWig signal p-value ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF383IWZ, ENCFF408QJU, ENCFF676LVI, ENCFF774DMF 1686052198 ENCODE Processing Pipeline 791e0592efb0a2a61ef4a062078432ee https://www.encodeproject.org/files/ENCFF550WZE/@@download/ENCFF550WZE.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF419QRY bigWig fold change over control ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF383IWZ, ENCFF408QJU, ENCFF676LVI 615433105 ENCODE Processing Pipeline 5cf682fedd3238d48bba6a55bbceac59 https://www.encodeproject.org/files/ENCFF419QRY/@@download/ENCFF419QRY.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF586SDK bigWig fold change over control ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF774DMF 1519225659 ENCODE Processing Pipeline c29e744a52f53bb08ba0721d9708a423 https://www.encodeproject.org/files/ENCFF586SDK/@@download/ENCFF586SDK.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF469EMZ bigWig fold change over control ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF383IWZ, ENCFF408QJU, ENCFF676LVI, ENCFF774DMF 1705192367 ENCODE Processing Pipeline c236ffeaedb926ec55879086abd4097e https://www.encodeproject.org/files/ENCFF469EMZ/@@download/ENCFF469EMZ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF771SBG bed narrowPeak replicated peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF250VMQ, ENCFF435IRJ, ENCFF786NZZ 7740011 ENCODE Processing Pipeline 77f76be66ba1c29c3858ea1f8cad40a7 https://www.encodeproject.org/files/ENCFF771SBG/@@download/ENCFF771SBG.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF730ESB bigBed narrowPeak replicated peaks ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF771SBG 13108409 ENCODE Processing Pipeline 74e8db657f1d822c626896167e2ae9e5 https://www.encodeproject.org/files/ENCFF730ESB/@@download/ENCFF730ESB.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001NKX bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NLH 424028436 Michael Snyder, Stanford a089c70bf66eae5f55bd3b5aa1aabf32 https://www.encodeproject.org/files/ENCFF001NKX/@@download/ENCFF001NKX.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NKY bigBed narrowPeak peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIN 2854555 Michael Snyder, Stanford d1d9be178f938cc56b0def135113404a https://www.encodeproject.org/files/ENCFF001NKY/@@download/ENCFF001NKY.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NKZ bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NLT 513688446 Michael Snyder, Stanford 7cfa24900b88159602ad28e202fa1b9e https://www.encodeproject.org/files/ENCFF001NKZ/@@download/ENCFF001NKZ.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLA bigWig signal ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKX, ENCFF001NKZ 333496156 Michael Snyder, Stanford e0afe968a7b99439771e094d6d1e04e0 https://www.encodeproject.org/files/ENCFF001NLA/@@download/ENCFF001NLA.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLH fastq reads ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 732841473 Michael Snyder, Stanford 35ff98b85dda13cad70e9afb22c6b988 https://www.encodeproject.org/files/ENCFF001NLH/@@download/ENCFF001NLH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001NLT fastq reads ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 940503223 Michael Snyder, Stanford e9d358767db7ee3edf11e03c8aedc839 https://www.encodeproject.org/files/ENCFF001NLT/@@download/ENCFF001NLT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001YIN bed narrowPeak peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKX, ENCFF001NKZ 1134604 Michael Snyder, Stanford d25c61303862bea9b1b1500ce5e14e40 https://www.encodeproject.org/files/ENCFF001YIN/@@download/ENCFF001YIN.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF608HGU bam unfiltered alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLT, ENCFF018NEO 1078711960 ENCODE Processing Pipeline 05b429b6da142842ba06ef1a7a799afd https://www.encodeproject.org/files/ENCFF608HGU/@@download/ENCFF608HGU.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF421VHZ bam unfiltered alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLH, ENCFF018NEO 862923890 ENCODE Processing Pipeline e697df9be42643a90d8b1b9ed78edb41 https://www.encodeproject.org/files/ENCFF421VHZ/@@download/ENCFF421VHZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF241INM bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLT, ENCFF018NEO 741873023 ENCODE Processing Pipeline aa61c1bb71a6d5d3194d84852ad3769e https://www.encodeproject.org/files/ENCFF241INM/@@download/ENCFF241INM.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF022TYB bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLH, ENCFF018NEO 603222105 ENCODE Processing Pipeline 477dadbe291b8975b74702ab9a7cdc90 https://www.encodeproject.org/files/ENCFF022TYB/@@download/ENCFF022TYB.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF055LKX bigWig signal p-value ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF022TYB, ENCFF339ZWC 232872090 ENCODE Processing Pipeline 6c7f00970cdd6412e545367b7005d57a https://www.encodeproject.org/files/ENCFF055LKX/@@download/ENCFF055LKX.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF204IJO bigWig signal p-value ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF241INM, ENCFF339ZWC 246597217 ENCODE Processing Pipeline f478fd1ab0138ce7e23ccc2ae9f6f5fe https://www.encodeproject.org/files/ENCFF204IJO/@@download/ENCFF204IJO.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF173UZZ bigWig signal p-value ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF022TYB, ENCFF241INM, ENCFF339ZWC 219868405 ENCODE Processing Pipeline 08784d7470de20d0a5739c130568c8e3 https://www.encodeproject.org/files/ENCFF173UZZ/@@download/ENCFF173UZZ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF901PDR bigWig fold change over control ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF022TYB, ENCFF339ZWC 257891464 ENCODE Processing Pipeline 7e5feaebe84041e38da4bc3b2de24825 https://www.encodeproject.org/files/ENCFF901PDR/@@download/ENCFF901PDR.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF216JRQ bigWig fold change over control ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF022TYB, ENCFF241INM, ENCFF339ZWC 473961857 ENCODE Processing Pipeline c0965ec6741200e33f3c950f98835beb https://www.encodeproject.org/files/ENCFF216JRQ/@@download/ENCFF216JRQ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF073GQV bigWig fold change over control ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF241INM, ENCFF339ZWC 300531270 ENCODE Processing Pipeline bbae25248ce4124e87dc711ea2b63a22 https://www.encodeproject.org/files/ENCFF073GQV/@@download/ENCFF073GQV.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF490BZL bed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF022TYB, ENCFF339ZWC 3166573 ENCODE Processing Pipeline 864d26763f1cd964617469259ce87923 https://www.encodeproject.org/files/ENCFF490BZL/@@download/ENCFF490BZL.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF431GLY bed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF241INM, ENCFF339ZWC 3171026 ENCODE Processing Pipeline 29009260949328d874dd193e8819a069 https://www.encodeproject.org/files/ENCFF431GLY/@@download/ENCFF431GLY.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF275BHY bed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF022TYB, ENCFF241INM, ENCFF339ZWC 5683721 ENCODE Processing Pipeline 3a0f9ef8e351c368d3863e08c80fe16d https://www.encodeproject.org/files/ENCFF275BHY/@@download/ENCFF275BHY.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF026WSE bigBed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF490BZL 6579460 ENCODE Processing Pipeline 3f82569b64e21a91e2f652326a03cd02 https://www.encodeproject.org/files/ENCFF026WSE/@@download/ENCFF026WSE.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF407UDM bigBed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF431GLY 6291294 ENCODE Processing Pipeline 491d4b699b1c4e56eb9b62d4764b6857 https://www.encodeproject.org/files/ENCFF407UDM/@@download/ENCFF407UDM.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF246PZW bigBed narrowPeak peaks and background as input for IDR ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF275BHY 13167525 ENCODE Processing Pipeline 86474b1d773b8a96e6bea4ba5f1829cc https://www.encodeproject.org/files/ENCFF246PZW/@@download/ENCFF246PZW.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF170CLI bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF020AAC 1184858 ENCODE Processing Pipeline 16e81a9c16fab3b13711e4fdb5433593 https://www.encodeproject.org/files/ENCFF170CLI/@@download/ENCFF170CLI.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF020AAC bed narrowPeak conservative idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF275BHY, ENCFF431GLY, ENCFF490BZL, ENCFF547MET 716578 ENCODE Processing Pipeline fdbbaba3cc7aa1024ce49de70d5df388 https://www.encodeproject.org/files/ENCFF020AAC/@@download/ENCFF020AAC.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF165NRC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF402YZT 1237567 ENCODE Processing Pipeline ef1ad412ced84e73676e5ba46123995f https://www.encodeproject.org/files/ENCFF165NRC/@@download/ENCFF165NRC.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF402YZT bed narrowPeak optimal idr thresholded peaks ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF275BHY, ENCFF431GLY, ENCFF490BZL, ENCFF547MET 758228 ENCODE Processing Pipeline 84f51d843d33a64b8f96bb8a130c1067 https://www.encodeproject.org/files/ENCFF402YZT/@@download/ENCFF402YZT.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF770PBO fastq reads ENCSR389SQZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 1 50 single-ended 1486126523 Richard Myers, HAIB 76f953e8cbf33b458b6dc95bbf8eb1f9 SRA:SRR5111527 https://www.encodeproject.org/files/ENCFF770PBO/@@download/ENCFF770PBO.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF316NAE bam unfiltered alignments ENCSR389SQZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 ENCFF018NEO, ENCFF770PBO 1627260024 ENCODE Processing Pipeline 1ff4054dcba974451d2d1b2e9edda10b https://www.encodeproject.org/files/ENCFF316NAE/@@download/ENCFF316NAE.bam mm10 released insufficient read depth for broad peaks control ENCFF697QBG bam alignments ENCSR389SQZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF770PBO 1264356128 ENCODE Processing Pipeline 2aad9ea6e8bf8c057bf802f6d78894e8 https://www.encodeproject.org/files/ENCFF697QBG/@@download/ENCFF697QBG.bam mm10 released insufficient read depth for broad peaks control ENCFF685COX fastq reads ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1017250765 Richard Myers, HAIB a885b6c7c5ecb73ece6493201a9c864e SRA:SRR5111151 https://www.encodeproject.org/files/ENCFF685COX/@@download/ENCFF685COX.fastq.gz Illumina HiSeq 2000 /files/ENCFF770PBO/ released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF671DZT fastq reads ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1277894350 Richard Myers, HAIB 644c5848a8ef826af1f6cc8ba3f9c922 SRA:SRR5111152 https://www.encodeproject.org/files/ENCFF671DZT/@@download/ENCFF671DZT.fastq.gz Illumina HiSeq 2000 /files/ENCFF770PBO/ released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF812WVE bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF685COX, ENCFF806TVZ 657195056 ENCODE Processing Pipeline 5c9fc9795c5364ee5baa2bd582036f95 https://www.encodeproject.org/files/ENCFF812WVE/@@download/ENCFF812WVE.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF681IOT bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF671DZT, ENCFF806TVZ 807411898 ENCODE Processing Pipeline b60c1f2faf0bfebf71bab0f1cc87c629 https://www.encodeproject.org/files/ENCFF681IOT/@@download/ENCFF681IOT.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF650CYV bam unfiltered alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 942940778 ENCODE Processing Pipeline 130c4176edefbc8df8ef7eb6e09726c2 https://www.encodeproject.org/files/ENCFF650CYV/@@download/ENCFF650CYV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF148MSI bam unfiltered alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 1186178131 ENCODE Processing Pipeline 956bec6fca892218b07584527f791e4f https://www.encodeproject.org/files/ENCFF148MSI/@@download/ENCFF148MSI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF812TBN bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 807345030 ENCODE Processing Pipeline 70a5235089f57eea2245dc746106137f https://www.encodeproject.org/files/ENCFF812TBN/@@download/ENCFF812TBN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF906IPW bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 657128090 ENCODE Processing Pipeline 3ff3f8762053189bc31bc5b5deb96fe3 https://www.encodeproject.org/files/ENCFF906IPW/@@download/ENCFF906IPW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF924UET bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 381849698 ENCODE Processing Pipeline b0199358bd2b969a00d378a9fcaed228 https://www.encodeproject.org/files/ENCFF924UET/@@download/ENCFF924UET.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF528HLZ bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 341933475 ENCODE Processing Pipeline 8dc2ba55baa7fc6f0851ea236ffa96a1 https://www.encodeproject.org/files/ENCFF528HLZ/@@download/ENCFF528HLZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF416UWZ bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 322791298 ENCODE Processing Pipeline b33ff68bf8518bf4a016b3cca16c4c87 https://www.encodeproject.org/files/ENCFF416UWZ/@@download/ENCFF416UWZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF030TZD bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 429133867 ENCODE Processing Pipeline e9397a556ebdd3ffee49589fe93e6204 https://www.encodeproject.org/files/ENCFF030TZD/@@download/ENCFF030TZD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF469JZH bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 277928065 ENCODE Processing Pipeline 350cc32df2c8e1a45ec619020d205a2f https://www.encodeproject.org/files/ENCFF469JZH/@@download/ENCFF469JZH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF685EPG bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 504771202 ENCODE Processing Pipeline 35645d931469c4690e0f88ff43b87069 https://www.encodeproject.org/files/ENCFF685EPG/@@download/ENCFF685EPG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF104PYP bed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 5916227 ENCODE Processing Pipeline 0fe0d6ed24326d4f9768e390ee39fe0e https://www.encodeproject.org/files/ENCFF104PYP/@@download/ENCFF104PYP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF686MBJ bed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 5221037 ENCODE Processing Pipeline 797ead747ec5d7de359b31b36c6c0fa2 https://www.encodeproject.org/files/ENCFF686MBJ/@@download/ENCFF686MBJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF880QHG bed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 5036842 ENCODE Processing Pipeline 2fbc1579d3b5fae9cb7c4e17cd601c4a https://www.encodeproject.org/files/ENCFF880QHG/@@download/ENCFF880QHG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF878VUM bigBed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF880QHG 11022291 ENCODE Processing Pipeline 29cb12d1302175ebdb238e9a49b32a0d https://www.encodeproject.org/files/ENCFF878VUM/@@download/ENCFF878VUM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF735IIP bigBed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP 11330426 ENCODE Processing Pipeline 4506a3211aab2c4d81f513afa93d3400 https://www.encodeproject.org/files/ENCFF735IIP/@@download/ENCFF735IIP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF756ZVS bigBed narrowPeak peaks and background as input for IDR ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF686MBJ 10971655 ENCODE Processing Pipeline 10a98be2251dfc96d1dd2f5f2d51a588 https://www.encodeproject.org/files/ENCFF756ZVS/@@download/ENCFF756ZVS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF756ROG bed narrowPeak conservative idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP, ENCFF547MET, ENCFF686MBJ, ENCFF880QHG 1160533 ENCODE Processing Pipeline 08bbbc987c4aca526274c8231381a98e https://www.encodeproject.org/files/ENCFF756ROG/@@download/ENCFF756ROG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF089DTP bigBed narrowPeak optimal idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF283XCT 2344299 ENCODE Processing Pipeline d699dea194e78b137bdeb57f542e5e86 https://www.encodeproject.org/files/ENCFF089DTP/@@download/ENCFF089DTP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF822GCD bigBed narrowPeak conservative idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF756ROG 2296039 ENCODE Processing Pipeline 6cd2519e530646dc927ce289f840b2ae https://www.encodeproject.org/files/ENCFF822GCD/@@download/ENCFF822GCD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF283XCT bed narrowPeak optimal idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP, ENCFF547MET, ENCFF686MBJ, ENCFF880QHG 1193732 ENCODE Processing Pipeline d4c5cfb2455bb43afd656c8b8b4bc646 https://www.encodeproject.org/files/ENCFF283XCT/@@download/ENCFF283XCT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF390DAS fastq reads ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1195087204 Richard Myers, HAIB c90f9489a9f90ea5b9199ca6bc628d81 SRA:SRR5111187 https://www.encodeproject.org/files/ENCFF390DAS/@@download/ENCFF390DAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF853NEA/ released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF837KZY fastq reads ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 975495120 Richard Myers, HAIB dbf65d0e00339744349c0c3a2412933e SRA:SRR5111188 https://www.encodeproject.org/files/ENCFF837KZY/@@download/ENCFF837KZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF853NEA/ released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF867KTT bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390DAS, ENCFF806TVZ 809439774 ENCODE Processing Pipeline 091c27200104fa3742f8ff808d0643b5 https://www.encodeproject.org/files/ENCFF867KTT/@@download/ENCFF867KTT.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF698YTR bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF806TVZ, ENCFF837KZY 638032982 ENCODE Processing Pipeline e4f8be54e8605755cbc08b71eb28393c https://www.encodeproject.org/files/ENCFF698YTR/@@download/ENCFF698YTR.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF270JZZ bam unfiltered alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 981304919 ENCODE Processing Pipeline 76359bee6ef276adb8c434b7e06c09e3 https://www.encodeproject.org/files/ENCFF270JZZ/@@download/ENCFF270JZZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF146SNM bam unfiltered alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 1149685089 ENCODE Processing Pipeline 0c3e6e87eb475d7b6702260d367b9c1c https://www.encodeproject.org/files/ENCFF146SNM/@@download/ENCFF146SNM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF538PLQ bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 809379754 ENCODE Processing Pipeline 58facf9f934b37fd7e94374e3e20ef2c https://www.encodeproject.org/files/ENCFF538PLQ/@@download/ENCFF538PLQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF669IDD bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 637979380 ENCODE Processing Pipeline c20d065504a33aa9a664a9004e1e3f57 https://www.encodeproject.org/files/ENCFF669IDD/@@download/ENCFF669IDD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF758LAP bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 367126109 ENCODE Processing Pipeline c340a6a64a4ffbdedc1c851898728188 https://www.encodeproject.org/files/ENCFF758LAP/@@download/ENCFF758LAP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF568EDT bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 315275114 ENCODE Processing Pipeline 7340123bfc2e38c968354d8c754cc6eb https://www.encodeproject.org/files/ENCFF568EDT/@@download/ENCFF568EDT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF193CUU bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 321659305 ENCODE Processing Pipeline 2c64aab28bbc7bd4c3c2ca108957b39e https://www.encodeproject.org/files/ENCFF193CUU/@@download/ENCFF193CUU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF349HWD bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 409676940 ENCODE Processing Pipeline 72348494b3909f946a61538213743729 https://www.encodeproject.org/files/ENCFF349HWD/@@download/ENCFF349HWD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF408VND bed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 4966337 ENCODE Processing Pipeline c054e8229f056eba4a6f9695d15f9751 https://www.encodeproject.org/files/ENCFF408VND/@@download/ENCFF408VND.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF739KHJ bigBed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF408VND 10964162 ENCODE Processing Pipeline d85c12a8cd7aebd95f3d28f0a0f561ed https://www.encodeproject.org/files/ENCFF739KHJ/@@download/ENCFF739KHJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF526QWN bigBed narrowPeak conservative idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF187ZKI 1510977 ENCODE Processing Pipeline 546712d1f9859974ec75863730053727 https://www.encodeproject.org/files/ENCFF526QWN/@@download/ENCFF526QWN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF114ZDH bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 279913528 ENCODE Processing Pipeline 011a513c592606fc6d323fe1f69d84f7 https://www.encodeproject.org/files/ENCFF114ZDH/@@download/ENCFF114ZDH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF875IOM bigBed narrowPeak optimal idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF784YSO 2084531 ENCODE Processing Pipeline d9b3993648f6c48c2d4a878303a79368 https://www.encodeproject.org/files/ENCFF875IOM/@@download/ENCFF875IOM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF784YSO bed narrowPeak optimal idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF381LLL, ENCFF408VND, ENCFF547MET, ENCFF694LLR 1043514 ENCODE Processing Pipeline db9ea3d68f32df3614efaf7db13de409 https://www.encodeproject.org/files/ENCFF784YSO/@@download/ENCFF784YSO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF083ZQN bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 501094311 ENCODE Processing Pipeline dc2d0a086f57df62ba22287d64c46b80 https://www.encodeproject.org/files/ENCFF083ZQN/@@download/ENCFF083ZQN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF381LLL bed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 5237998 ENCODE Processing Pipeline b72e863e5e9325a8e4356c3cca172882 https://www.encodeproject.org/files/ENCFF381LLL/@@download/ENCFF381LLL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF694LLR bed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 5642697 ENCODE Processing Pipeline 8615a9030fa4e2a46866e917f66c679d https://www.encodeproject.org/files/ENCFF694LLR/@@download/ENCFF694LLR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF834LET bigBed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF381LLL 13269597 ENCODE Processing Pipeline 7eb9936a0b01ccda19314389efab0ef7 https://www.encodeproject.org/files/ENCFF834LET/@@download/ENCFF834LET.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF354XFA bigBed narrowPeak peaks and background as input for IDR ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF694LLR 11233714 ENCODE Processing Pipeline 6fdd2ee684037ade0cd76d198ab81da6 https://www.encodeproject.org/files/ENCFF354XFA/@@download/ENCFF354XFA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF187ZKI bed narrowPeak conservative idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF381LLL, ENCFF408VND, ENCFF547MET, ENCFF694LLR 953605 ENCODE Processing Pipeline cc1d6bb82873299c9e48a9a1ef5a99a1 https://www.encodeproject.org/files/ENCFF187ZKI/@@download/ENCFF187ZKI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF001ZRS fastq reads ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1111378980 Bing Ren, UCSD 41e19cd2e0398748a12ef59139a336fa SRA:SRR3653389 https://www.encodeproject.org/files/ENCFF001ZRS/@@download/ENCFF001ZRS.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZRT fastq reads ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1005186754 Bing Ren, UCSD 6e72cdb2fd09f67284ae1722a2a894af SRA:SRR3653387 https://www.encodeproject.org/files/ENCFF001ZRT/@@download/ENCFF001ZRT.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF123MKU fastq reads ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 327219681 Bing Ren, UCSD b595aee312c2bf91794abf8977ccae06 SRA:SRR3653390 https://www.encodeproject.org/files/ENCFF123MKU/@@download/ENCFF123MKU.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/, /files/ENCFF825VCS/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF952SFK fastq reads ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 621301306 Bing Ren, UCSD 22750bcb5f8c3c9ff42b4904b8648f19 SRA:SRR3653388 https://www.encodeproject.org/files/ENCFF952SFK/@@download/ENCFF952SFK.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF047WAJ bam alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRT, ENCFF806TVZ, ENCFF952SFK 1327065416 ENCODE Processing Pipeline 7c9edfc7989eb0a6f01a52e0f440fd9e https://www.encodeproject.org/files/ENCFF047WAJ/@@download/ENCFF047WAJ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF613OIC bam alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRS, ENCFF123MKU, ENCFF806TVZ 1168068544 ENCODE Processing Pipeline dd82823f8d95c1d9d676b8326f29c80f https://www.encodeproject.org/files/ENCFF613OIC/@@download/ENCFF613OIC.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF024ENP bed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF613OIC, ENCFF695ODM 1312608 ENCODE Processing Pipeline e768565fc106cc311ebcb765c1f05f89 https://www.encodeproject.org/files/ENCFF024ENP/@@download/ENCFF024ENP.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF316XUB bigBed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF024ENP 3176987 ENCODE Processing Pipeline 4a0b3f3549dcd5cf83f24cadd5515919 https://www.encodeproject.org/files/ENCFF316XUB/@@download/ENCFF316XUB.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF322FWO bed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF047WAJ, ENCFF204GFG, ENCFF695ODM 2305804 ENCODE Processing Pipeline c8996ebfd87960700d65a5a26d205ebc https://www.encodeproject.org/files/ENCFF322FWO/@@download/ENCFF322FWO.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF686GUS bed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047WAJ, ENCFF204GFG, ENCFF613OIC, ENCFF695ODM 1264461 ENCODE Processing Pipeline 6cee6d650c5eb0d61c307eb3a0ac4092 https://www.encodeproject.org/files/ENCFF686GUS/@@download/ENCFF686GUS.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF023JVX bigBed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF322FWO 5046295 ENCODE Processing Pipeline 1da489fcf07fa5cbd1f1f9a9cfbbccee https://www.encodeproject.org/files/ENCFF023JVX/@@download/ENCFF023JVX.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF734XSP bigBed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF686GUS 2936058 ENCODE Processing Pipeline fd1ffd63900fb16691bf78da7f78e82a https://www.encodeproject.org/files/ENCFF734XSP/@@download/ENCFF734XSP.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF424YLM bigWig signal p-value ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF613OIC, ENCFF695ODM 356532685 ENCODE Processing Pipeline 3074d840c5a9d1e224b5e29f2ec08ce2 https://www.encodeproject.org/files/ENCFF424YLM/@@download/ENCFF424YLM.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF005ZHI bigWig signal p-value ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF047WAJ, ENCFF204GFG, ENCFF695ODM 375230001 ENCODE Processing Pipeline 8e9eee23889bca1b1f69f470bdb769d8 https://www.encodeproject.org/files/ENCFF005ZHI/@@download/ENCFF005ZHI.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF623KQG bigWig signal p-value ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047WAJ, ENCFF204GFG, ENCFF613OIC, ENCFF695ODM 486630372 ENCODE Processing Pipeline ec0e1c68de2c1219675788b490b1fc42 https://www.encodeproject.org/files/ENCFF623KQG/@@download/ENCFF623KQG.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF245PMS bigWig fold change over control ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF613OIC, ENCFF695ODM 428041824 ENCODE Processing Pipeline 54e0bdecd508d05499c63e618f7a1563 https://www.encodeproject.org/files/ENCFF245PMS/@@download/ENCFF245PMS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF854RYF bigWig fold change over control ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF047WAJ, ENCFF204GFG, ENCFF695ODM 455738941 ENCODE Processing Pipeline 535f6a3e42ae9eeda140a89ab12999b3 https://www.encodeproject.org/files/ENCFF854RYF/@@download/ENCFF854RYF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF624PBJ bigBed narrowPeak replicated peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF262EYU 2427359 ENCODE Processing Pipeline 30b0aa11aa3fc111d4e8b0c12aa9123b https://www.encodeproject.org/files/ENCFF624PBJ/@@download/ENCFF624PBJ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF262EYU bed narrowPeak replicated peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF024ENP, ENCFF322FWO, ENCFF686GUS 1167006 ENCODE Processing Pipeline 9597a57ae570ae2b66ac783f588669de https://www.encodeproject.org/files/ENCFF262EYU/@@download/ENCFF262EYU.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF425RZM bigWig fold change over control ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047WAJ, ENCFF204GFG, ENCFF613OIC, ENCFF695ODM 728140947 ENCODE Processing Pipeline 0f8f0966eef86dfb03f119270e000229 https://www.encodeproject.org/files/ENCFF425RZM/@@download/ENCFF425RZM.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF757XTQ bam unfiltered alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRS, ENCFF018NEO, ENCFF123MKU 1742406524 ENCODE Processing Pipeline 70718b322335f62e1662175d1c8548bd https://www.encodeproject.org/files/ENCFF757XTQ/@@download/ENCFF757XTQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF170ZCU bam unfiltered alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRT, ENCFF018NEO, ENCFF952SFK 1876263578 ENCODE Processing Pipeline 1f9feb1b59106c6318cb36f044699ee0 https://www.encodeproject.org/files/ENCFF170ZCU/@@download/ENCFF170ZCU.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF528ZVN bam alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRS, ENCFF018NEO, ENCFF123MKU 1091401338 ENCODE Processing Pipeline 7b59fd618dd82984938e3fd33746dc05 https://www.encodeproject.org/files/ENCFF528ZVN/@@download/ENCFF528ZVN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF695PCS bam alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRT, ENCFF018NEO, ENCFF952SFK 1191710914 ENCODE Processing Pipeline a2656e0a2d08f379aaf1f65501127aa7 https://www.encodeproject.org/files/ENCFF695PCS/@@download/ENCFF695PCS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF067WVN bed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF695PCS 2409047 ENCODE Processing Pipeline 5d89280048dde1d2963f5089bd6c909e https://www.encodeproject.org/files/ENCFF067WVN/@@download/ENCFF067WVN.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF278XUM bigBed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF067WVN 5235351 ENCODE Processing Pipeline af26f4abcf3281a4442e2fab3c2389cf https://www.encodeproject.org/files/ENCFF278XUM/@@download/ENCFF278XUM.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF297OTJ bed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF528ZVN, ENCFF631YQS, ENCFF658BBR 1330019 ENCODE Processing Pipeline 3c7c6672999df5d77f0e12b41b0affa0 https://www.encodeproject.org/files/ENCFF297OTJ/@@download/ENCFF297OTJ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF407DSV bed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF528ZVN, ENCFF631YQS, ENCFF658BBR, ENCFF695PCS 1282004 ENCODE Processing Pipeline d7afadd82877b7d43311f19ee69a9c4e https://www.encodeproject.org/files/ENCFF407DSV/@@download/ENCFF407DSV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF466ALN bigBed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF297OTJ 3215917 ENCODE Processing Pipeline f615876d1df83744866af00775e2ad08 https://www.encodeproject.org/files/ENCFF466ALN/@@download/ENCFF466ALN.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF336NEA bigBed narrowPeak peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF407DSV 2979234 ENCODE Processing Pipeline a50dc46bba3d0e38eb70357fb08847d2 https://www.encodeproject.org/files/ENCFF336NEA/@@download/ENCFF336NEA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF729TEX bigWig signal p-value ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF695PCS 476902944 ENCODE Processing Pipeline 328cb874586f006330c08b0fc3df937b https://www.encodeproject.org/files/ENCFF729TEX/@@download/ENCFF729TEX.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF964LAJ bigWig signal p-value ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF528ZVN, ENCFF631YQS, ENCFF658BBR 432437266 ENCODE Processing Pipeline 63f3a57327e1bee3f4eb3f2241efd0b9 https://www.encodeproject.org/files/ENCFF964LAJ/@@download/ENCFF964LAJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF446VGJ bigWig signal p-value ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF528ZVN, ENCFF631YQS, ENCFF658BBR, ENCFF695PCS 483503340 ENCODE Processing Pipeline 42c3af6c4550770590ad65952f5813c2 https://www.encodeproject.org/files/ENCFF446VGJ/@@download/ENCFF446VGJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF401WMB bigWig fold change over control ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF528ZVN, ENCFF631YQS, ENCFF658BBR 420349595 ENCODE Processing Pipeline 1bf265a02f7240714bb99f0c0392b157 https://www.encodeproject.org/files/ENCFF401WMB/@@download/ENCFF401WMB.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF981BBG bigWig fold change over control ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF695PCS 447878984 ENCODE Processing Pipeline 478722da447e122c83dcd1036f6bff64 https://www.encodeproject.org/files/ENCFF981BBG/@@download/ENCFF981BBG.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF260BXV bigWig fold change over control ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF528ZVN, ENCFF631YQS, ENCFF658BBR, ENCFF695PCS 720378069 ENCODE Processing Pipeline af04cc38bcfd23a6e3652d141e8df25a https://www.encodeproject.org/files/ENCFF260BXV/@@download/ENCFF260BXV.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF797KBV bed narrowPeak replicated peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF067WVN, ENCFF297OTJ, ENCFF407DSV 1197562 ENCODE Processing Pipeline 3c00cb08f1457661c563211f9a02747a https://www.encodeproject.org/files/ENCFF797KBV/@@download/ENCFF797KBV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF356FNX bigBed narrowPeak replicated peaks ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF797KBV 2477779 ENCODE Processing Pipeline 388461717e97bf015fd02e1a034064e5 https://www.encodeproject.org/files/ENCFF356FNX/@@download/ENCFF356FNX.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001KSB bam alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KSM 396611872 Bing Ren, UCSD 06ae5a606a191c22ae90b432ea94b915 https://www.encodeproject.org/files/ENCFF001KSB/@@download/ENCFF001KSB.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KSC bigBed broadPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYS 1822640 Bing Ren, UCSD b6079c0d1db23d477305e86f99b271ba https://www.encodeproject.org/files/ENCFF001KSC/@@download/ENCFF001KSC.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KSD bam alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KSQ 461398696 Bing Ren, UCSD 3cc9eea8bc8924c2ff368c85d9d5a15a https://www.encodeproject.org/files/ENCFF001KSD/@@download/ENCFF001KSD.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KSF bigWig signal ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSB, ENCFF001KSD 42456594 Bing Ren, UCSD 6c4ab7d608296d9ae8bdda184dac5e55 https://www.encodeproject.org/files/ENCFF001KSF/@@download/ENCFF001KSF.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KSM fastq reads ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 450416564 Bing Ren, UCSD 437f79ed808b1f59d739a1a8c33108b7 https://www.encodeproject.org/files/ENCFF001KSM/@@download/ENCFF001KSM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KTC/ released low read length insufficient read depth, control insufficient read depth ENCFF001KSQ fastq reads ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 533917712 Bing Ren, UCSD 57eff013e0100fda768e62b639cebb50 https://www.encodeproject.org/files/ENCFF001KSQ/@@download/ENCFF001KSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KTF/ released low read length insufficient read depth, control insufficient read depth ENCFF001XYS bed broadPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSB, ENCFF001KSD 1274772 Bing Ren, UCSD 54b5646ff1c6117b55e3b6ccc1ca1e3c https://www.encodeproject.org/files/ENCFF001XYS/@@download/ENCFF001XYS.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF351ZWX bam unfiltered alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KSM, ENCFF018NEO 512568562 ENCODE Processing Pipeline 207c8a1db81153aa658da4e84cf8ee42 https://www.encodeproject.org/files/ENCFF351ZWX/@@download/ENCFF351ZWX.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF629CTG bam unfiltered alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSQ, ENCFF018NEO 598601243 ENCODE Processing Pipeline 1ac37a066e2f001d30975d1375141ba1 https://www.encodeproject.org/files/ENCFF629CTG/@@download/ENCFF629CTG.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF043ANB bam alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KSM, ENCFF018NEO 396977856 ENCODE Processing Pipeline cde9040d493678142493c3c96f3cc502 https://www.encodeproject.org/files/ENCFF043ANB/@@download/ENCFF043ANB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF395RKE bam alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSQ, ENCFF018NEO 430663849 ENCODE Processing Pipeline 620f5114b083ee05c36b2a5bba5dad25 https://www.encodeproject.org/files/ENCFF395RKE/@@download/ENCFF395RKE.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF933CMN bed narrowPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF043ANB, ENCFF395RKE, ENCFF674KWP, ENCFF914TSC 2690964 ENCODE Processing Pipeline ab78630cabe7c354797309eef3451b43 https://www.encodeproject.org/files/ENCFF933CMN/@@download/ENCFF933CMN.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF084KQL bed narrowPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF043ANB, ENCFF674KWP, ENCFF914TSC 2935480 ENCODE Processing Pipeline 870b40351893e5921acb458908675705 https://www.encodeproject.org/files/ENCFF084KQL/@@download/ENCFF084KQL.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF877GYW bed narrowPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF395RKE, ENCFF674KWP, ENCFF914TSC 2704503 ENCODE Processing Pipeline b34f703cfb27e264b50aa7d54e799ccd https://www.encodeproject.org/files/ENCFF877GYW/@@download/ENCFF877GYW.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF982JGD bigBed narrowPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF084KQL 8418216 ENCODE Processing Pipeline 34b34ffc593c4f9a4a9f7dfe2bca2a09 https://www.encodeproject.org/files/ENCFF982JGD/@@download/ENCFF982JGD.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF571LCR bigBed narrowPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF933CMN 7712782 ENCODE Processing Pipeline a1b0459c742a84fe96c4bd89d73e9680 https://www.encodeproject.org/files/ENCFF571LCR/@@download/ENCFF571LCR.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF516JXF bigBed narrowPeak peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF877GYW 6164524 ENCODE Processing Pipeline 923c2f9a5964b0a6c2852428d0576dce https://www.encodeproject.org/files/ENCFF516JXF/@@download/ENCFF516JXF.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF469DJK bigWig signal p-value ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF043ANB, ENCFF674KWP, ENCFF914TSC 265854912 ENCODE Processing Pipeline d79328d6280bfa0ad3df4ef3c96e8e6b https://www.encodeproject.org/files/ENCFF469DJK/@@download/ENCFF469DJK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF262WEF bigWig signal p-value ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF395RKE, ENCFF674KWP, ENCFF914TSC 238116868 ENCODE Processing Pipeline 4b7e4d2701cc871dc91801bb6e741b89 https://www.encodeproject.org/files/ENCFF262WEF/@@download/ENCFF262WEF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF918VLF bigWig signal p-value ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF043ANB, ENCFF395RKE, ENCFF674KWP, ENCFF914TSC 340887575 ENCODE Processing Pipeline de7b584f0d5e54fa0ac0dda3c5c9cde6 https://www.encodeproject.org/files/ENCFF918VLF/@@download/ENCFF918VLF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF877QFT bigWig fold change over control ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF043ANB, ENCFF674KWP, ENCFF914TSC 203172447 ENCODE Processing Pipeline 16fb48578eb2b2282f453d3a2dc74ab0 https://www.encodeproject.org/files/ENCFF877QFT/@@download/ENCFF877QFT.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF013AAG bigWig fold change over control ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF395RKE, ENCFF674KWP, ENCFF914TSC 226935105 ENCODE Processing Pipeline d21f64d79f06d0ddfa33aecc37a5a6a1 https://www.encodeproject.org/files/ENCFF013AAG/@@download/ENCFF013AAG.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF844ZFQ bigWig fold change over control ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF043ANB, ENCFF395RKE, ENCFF674KWP, ENCFF914TSC 356609763 ENCODE Processing Pipeline 8f85ccb694327509530c96515a241902 https://www.encodeproject.org/files/ENCFF844ZFQ/@@download/ENCFF844ZFQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF619QGK bigBed narrowPeak replicated peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF328VYQ 6092596 ENCODE Processing Pipeline 7bb17cc390cd987f48eabf7021fc50f4 https://www.encodeproject.org/files/ENCFF619QGK/@@download/ENCFF619QGK.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF328VYQ bed narrowPeak replicated peaks ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF084KQL, ENCFF877GYW, ENCFF933CMN 2856758 ENCODE Processing Pipeline f582a6df8003dab90ae2841aad489039 https://www.encodeproject.org/files/ENCFF328VYQ/@@download/ENCFF328VYQ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001OAU bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001OAX 451999632 Michael Snyder, Stanford fc42c30bfe30cec414b43ebcc438e5d7 https://www.encodeproject.org/files/ENCFF001OAU/@@download/ENCFF001OAU.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OAV bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OAZ 510893993 Michael Snyder, Stanford c7d2a13d98c2dcdc1fc80a77c34c5277 https://www.encodeproject.org/files/ENCFF001OAV/@@download/ENCFF001OAV.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OAW bigBed narrowPeak peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKL 581219 Michael Snyder, Stanford 5e0e5348258da4a5f67d0d7968262a53 https://www.encodeproject.org/files/ENCFF001OAW/@@download/ENCFF001OAW.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OAX fastq reads ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 922940872 Michael Snyder, Stanford 86e1b41f014b98b182e03c430bf545ac https://www.encodeproject.org/files/ENCFF001OAX/@@download/ENCFF001OAX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OAZ fastq reads ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 985534876 Michael Snyder, Stanford b76237984bfd5538c066998590046e0d https://www.encodeproject.org/files/ENCFF001OAZ/@@download/ENCFF001OAZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OBB bigWig signal ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OAU, ENCFF001OAV 425753413 Michael Snyder, Stanford 3d21b093060924b124eba88c022baece https://www.encodeproject.org/files/ENCFF001OBB/@@download/ENCFF001OBB.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKL bed narrowPeak peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OAU, ENCFF001OAV 252446 Michael Snyder, Stanford d1d0b98bff251b9788a500a048162d85 https://www.encodeproject.org/files/ENCFF001YKL/@@download/ENCFF001YKL.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF260VDK bam unfiltered alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OAX, ENCFF018NEO 1001992051 ENCODE Processing Pipeline 296dd60c6ba50c82ff8f4c3b0ddbc551 https://www.encodeproject.org/files/ENCFF260VDK/@@download/ENCFF260VDK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF968XRQ bam unfiltered alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAZ, ENCFF018NEO 1081843815 ENCODE Processing Pipeline c9012282aaae3e915b4ce8b022a00e81 https://www.encodeproject.org/files/ENCFF968XRQ/@@download/ENCFF968XRQ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF145YHD bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAZ, ENCFF018NEO 691803605 ENCODE Processing Pipeline d5967270938634d2c43b9e70780fb8b6 https://www.encodeproject.org/files/ENCFF145YHD/@@download/ENCFF145YHD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF945QLN bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OAX, ENCFF018NEO 604631045 ENCODE Processing Pipeline 4de3b81ce969c0711f5644ab890f7bb2 https://www.encodeproject.org/files/ENCFF945QLN/@@download/ENCFF945QLN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF658EZY bigWig signal p-value ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF145YHD, ENCFF171OVT, ENCFF945QLN 315590185 ENCODE Processing Pipeline 2aa016f905d020fa7529538f2afcd88d https://www.encodeproject.org/files/ENCFF658EZY/@@download/ENCFF658EZY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF273QJV bed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF145YHD, ENCFF171OVT, ENCFF945QLN 5025264 ENCODE Processing Pipeline fd632230a95dcfe7373307784779b4cc https://www.encodeproject.org/files/ENCFF273QJV/@@download/ENCFF273QJV.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF656ZJV bigWig signal p-value ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF945QLN 300982711 ENCODE Processing Pipeline 7d9134e3721f32aa4c6da0014c95edf7 https://www.encodeproject.org/files/ENCFF656ZJV/@@download/ENCFF656ZJV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF308QHU bigWig signal p-value ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF145YHD, ENCFF171OVT 331632326 ENCODE Processing Pipeline 6eb5abe2670f74e919c43044830bf79a https://www.encodeproject.org/files/ENCFF308QHU/@@download/ENCFF308QHU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF715AQW bed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF145YHD, ENCFF171OVT 4450417 ENCODE Processing Pipeline b05ec5cc9c892c00755e3cc79c123620 https://www.encodeproject.org/files/ENCFF715AQW/@@download/ENCFF715AQW.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF856TOM bigBed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF715AQW 10412539 ENCODE Processing Pipeline f3d2829dcee51d370a270272a515ad3b https://www.encodeproject.org/files/ENCFF856TOM/@@download/ENCFF856TOM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF235YHK bed narrowPeak optimal idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF273QJV, ENCFF547MET, ENCFF628USD, ENCFF715AQW 385653 ENCODE Processing Pipeline 7680aaf37ea7486439262f5660a821a3 https://www.encodeproject.org/files/ENCFF235YHK/@@download/ENCFF235YHK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF417EAD bigWig fold change over control ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF145YHD, ENCFF171OVT, ENCFF945QLN 510071222 ENCODE Processing Pipeline 96b2b25a4ff6048f6169d7640d6ca4e7 https://www.encodeproject.org/files/ENCFF417EAD/@@download/ENCFF417EAD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF981FOC bed narrowPeak conservative idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF273QJV, ENCFF547MET, ENCFF628USD, ENCFF715AQW 379249 ENCODE Processing Pipeline a1e93f9dadb62c1641f549677382ca99 https://www.encodeproject.org/files/ENCFF981FOC/@@download/ENCFF981FOC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF015AVF bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF981FOC 682541 ENCODE Processing Pipeline d4fb09193d5f749ffc7a7e1774b33ee4 https://www.encodeproject.org/files/ENCFF015AVF/@@download/ENCFF015AVF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF780NMA bigWig fold change over control ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF945QLN 272891961 ENCODE Processing Pipeline 1f3a04f8346e506853182e5941f5adc3 https://www.encodeproject.org/files/ENCFF780NMA/@@download/ENCFF780NMA.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF353DTE bigBed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF273QJV 10849277 ENCODE Processing Pipeline 3c3486000327a3d5ce989954a6f1d483 https://www.encodeproject.org/files/ENCFF353DTE/@@download/ENCFF353DTE.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF137VTC bigWig fold change over control ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF145YHD, ENCFF171OVT 316536015 ENCODE Processing Pipeline 346e0954b8de6374b938a89ab8fecd5e https://www.encodeproject.org/files/ENCFF137VTC/@@download/ENCFF137VTC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF628USD bed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF945QLN 4276867 ENCODE Processing Pipeline 364a8e0ad48fe081a942e427149f21ca https://www.encodeproject.org/files/ENCFF628USD/@@download/ENCFF628USD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF976EUP bigBed narrowPeak peaks and background as input for IDR ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF628USD 10148256 ENCODE Processing Pipeline 4a172d58696079225c49602ce1ff9927 https://www.encodeproject.org/files/ENCFF976EUP/@@download/ENCFF976EUP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF721OLH bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF235YHK 692306 ENCODE Processing Pipeline 4ac2d4faa25df648bd8d9a20ab9e8854 https://www.encodeproject.org/files/ENCFF721OLH/@@download/ENCFF721OLH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF865AMT fastq reads ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2552383059 Bing Ren, UCSD c47009705e2e5c077294223875d8aa00 SRA:SRR4235727 https://www.encodeproject.org/files/ENCFF865AMT/@@download/ENCFF865AMT.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released mild to moderate bottlenecking ENCFF653ZDW fastq reads ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2626619635 Bing Ren, UCSD b0f9db78e31ce29aa2e472071d3fe312 SRA:SRR4235728 https://www.encodeproject.org/files/ENCFF653ZDW/@@download/ENCFF653ZDW.fastq.gz Illumina HiSeq 4000 /files/ENCFF366TEJ/ released mild to moderate bottlenecking ENCFF531EDE bam unfiltered alignments ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF865AMT 3376069375 ENCODE Processing Pipeline e4035585c0250784e704f3574720e0cb https://www.encodeproject.org/files/ENCFF531EDE/@@download/ENCFF531EDE.bam mm10 released mild to moderate bottlenecking ENCFF042NKB bam unfiltered alignments ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF653ZDW 3429222085 ENCODE Processing Pipeline 21588bcfc7c86af747f793e486089f7d https://www.encodeproject.org/files/ENCFF042NKB/@@download/ENCFF042NKB.bam mm10 released mild to moderate bottlenecking ENCFF701FHJ bam alignments ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF653ZDW 1373552834 ENCODE Processing Pipeline 757732dfaa90c19941a4afd4a5fa43fa https://www.encodeproject.org/files/ENCFF701FHJ/@@download/ENCFF701FHJ.bam mm10 released mild to moderate bottlenecking ENCFF080WAD bam alignments ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF865AMT 1422608119 ENCODE Processing Pipeline 8fb2512c28ac478d068483afe04bf643 https://www.encodeproject.org/files/ENCFF080WAD/@@download/ENCFF080WAD.bam mm10 released mild to moderate bottlenecking ENCFF801AGM bed narrowPeak peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF701FHJ 2765445 ENCODE Processing Pipeline e0a1cecb74d3e7c0d6de35dc44c07824 https://www.encodeproject.org/files/ENCFF801AGM/@@download/ENCFF801AGM.bed.gz mm10 released mild to moderate bottlenecking ENCFF365HGX bed narrowPeak peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF080WAD, ENCFF181QWR, ENCFF344GQQ 1327154 ENCODE Processing Pipeline 51623d693813001b4b953c6f038e9765 https://www.encodeproject.org/files/ENCFF365HGX/@@download/ENCFF365HGX.bed.gz mm10 released mild to moderate bottlenecking ENCFF375LNS bigBed narrowPeak peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF801AGM 6188486 ENCODE Processing Pipeline f12c09d142efa655209053e653673ebb https://www.encodeproject.org/files/ENCFF375LNS/@@download/ENCFF375LNS.bigBed mm10 released mild to moderate bottlenecking ENCFF284ZDG bigBed narrowPeak peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF104BQA 6011642 ENCODE Processing Pipeline 7a15b672265fdec8948e9fc50097a035 https://www.encodeproject.org/files/ENCFF284ZDG/@@download/ENCFF284ZDG.bigBed mm10 released mild to moderate bottlenecking ENCFF104BQA bed narrowPeak peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF080WAD, ENCFF181QWR, ENCFF344GQQ, ENCFF701FHJ 2726143 ENCODE Processing Pipeline 3e8837299ca2af13bece472aa9a1652c https://www.encodeproject.org/files/ENCFF104BQA/@@download/ENCFF104BQA.bed.gz mm10 released mild to moderate bottlenecking ENCFF571WVO bigBed narrowPeak peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF365HGX 2591311 ENCODE Processing Pipeline cb55501c7838a33f6b3c0d2a4272d1f4 https://www.encodeproject.org/files/ENCFF571WVO/@@download/ENCFF571WVO.bigBed mm10 released mild to moderate bottlenecking ENCFF768CDT bigWig signal p-value ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF701FHJ 922477155 ENCODE Processing Pipeline 59944fd6106dfa242f6c1f297fda5c68 https://www.encodeproject.org/files/ENCFF768CDT/@@download/ENCFF768CDT.bigWig mm10 released mild to moderate bottlenecking ENCFF995CSG bigWig signal p-value ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF080WAD, ENCFF181QWR, ENCFF344GQQ, ENCFF701FHJ 1299130715 ENCODE Processing Pipeline 2af6ac22eb1f4cb7c69f50d9eaca8590 https://www.encodeproject.org/files/ENCFF995CSG/@@download/ENCFF995CSG.bigWig mm10 released mild to moderate bottlenecking ENCFF341FHL bigWig signal p-value ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF080WAD, ENCFF181QWR, ENCFF344GQQ 822953955 ENCODE Processing Pipeline 14dd98b163d2b4bca674501b31897236 https://www.encodeproject.org/files/ENCFF341FHL/@@download/ENCFF341FHL.bigWig mm10 released mild to moderate bottlenecking ENCFF364GHK bigWig fold change over control ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF701FHJ 819272145 ENCODE Processing Pipeline 3210faf88f946faf7c7d0d40324b5ebd https://www.encodeproject.org/files/ENCFF364GHK/@@download/ENCFF364GHK.bigWig mm10 released mild to moderate bottlenecking ENCFF368LTB bigWig fold change over control ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF080WAD, ENCFF181QWR, ENCFF344GQQ 849940719 ENCODE Processing Pipeline b1909d18fcfd799ef14af45ba4efd643 https://www.encodeproject.org/files/ENCFF368LTB/@@download/ENCFF368LTB.bigWig mm10 released mild to moderate bottlenecking ENCFF672EXE bigWig fold change over control ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF080WAD, ENCFF181QWR, ENCFF344GQQ, ENCFF701FHJ 1282453063 ENCODE Processing Pipeline 70e741614f8651a1be13e9fc474fbe0f https://www.encodeproject.org/files/ENCFF672EXE/@@download/ENCFF672EXE.bigWig mm10 released mild to moderate bottlenecking ENCFF676DCP bed narrowPeak replicated peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF104BQA, ENCFF365HGX, ENCFF801AGM 1105947 ENCODE Processing Pipeline 85e6a1a40bfdb4cafb0f43d7a486b804 https://www.encodeproject.org/files/ENCFF676DCP/@@download/ENCFF676DCP.bed.gz mm10 released mild to moderate bottlenecking ENCFF321YPC bigBed narrowPeak replicated peaks ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF676DCP 2326653 ENCODE Processing Pipeline 5dc2ec26b6f8b144d7294007926db17a https://www.encodeproject.org/files/ENCFF321YPC/@@download/ENCFF321YPC.bigBed mm10 released mild to moderate bottlenecking ENCFF223XYA fastq reads ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 1 50 single-ended 2822858527 Bing Ren, UCSD 12dea887232fe30048a180b622d59114 SRA:SRR5833007 https://www.encodeproject.org/files/ENCFF223XYA/@@download/ENCFF223XYA.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released mild to moderate bottlenecking ENCFF058OWQ fastq reads ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 1 50 single-ended 2559518583 Bing Ren, UCSD 614fa6dc7fc178ddbe855d5381e032d4 SRA:SRR5833006 https://www.encodeproject.org/files/ENCFF058OWQ/@@download/ENCFF058OWQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF024PVD/ released mild to moderate bottlenecking ENCFF536QZS bam unfiltered alignments ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF018NEO, ENCFF058OWQ 3355389278 ENCODE Processing Pipeline 35daaf76c3d4e45d1d42aacea36ce821 https://www.encodeproject.org/files/ENCFF536QZS/@@download/ENCFF536QZS.bam mm10 released mild to moderate bottlenecking ENCFF285RMJ bam unfiltered alignments ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF018NEO, ENCFF223XYA 3728816364 ENCODE Processing Pipeline cc869428d396d1162f618330caf8dd26 https://www.encodeproject.org/files/ENCFF285RMJ/@@download/ENCFF285RMJ.bam mm10 released mild to moderate bottlenecking ENCFF853OMH bam alignments ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 50 ENCFF018NEO, ENCFF223XYA 1786194808 ENCODE Processing Pipeline 701bc51ba9b3ed55ed8ff3ea43b60caf https://www.encodeproject.org/files/ENCFF853OMH/@@download/ENCFF853OMH.bam mm10 released mild to moderate bottlenecking ENCFF013BFX bam alignments ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 50 ENCFF018NEO, ENCFF058OWQ 1350989899 ENCODE Processing Pipeline 31416db96333b0242e7e3375b427fcd5 https://www.encodeproject.org/files/ENCFF013BFX/@@download/ENCFF013BFX.bam mm10 released mild to moderate bottlenecking ENCFF956EKM bigWig signal p-value ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF853OMH, ENCFF869IME 666103600 ENCODE Processing Pipeline 416b1dc30bc379ac4a0d573125cd03da https://www.encodeproject.org/files/ENCFF956EKM/@@download/ENCFF956EKM.bigWig mm10 released mild to moderate bottlenecking ENCFF640UNG bed narrowPeak peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF013BFX, ENCFF940GMW 2435535 ENCODE Processing Pipeline 426663bddcb4d2dfec869fcf4be1438e https://www.encodeproject.org/files/ENCFF640UNG/@@download/ENCFF640UNG.bed.gz mm10 released mild to moderate bottlenecking ENCFF945JYO bed narrowPeak peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1, 2 ENCFF013BFX, ENCFF853OMH, ENCFF869IME, ENCFF940GMW 1670211 ENCODE Processing Pipeline d89767ec554b934702fb4c7a832a42ce https://www.encodeproject.org/files/ENCFF945JYO/@@download/ENCFF945JYO.bed.gz mm10 released mild to moderate bottlenecking ENCFF116MXT bigBed narrowPeak peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF893SWH 3222666 ENCODE Processing Pipeline 6d746476d6ca2171e8e234e8a4a61e33 https://www.encodeproject.org/files/ENCFF116MXT/@@download/ENCFF116MXT.bigBed mm10 released mild to moderate bottlenecking ENCFF933DWT bigBed narrowPeak peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF640UNG 5422910 ENCODE Processing Pipeline 42b537ab5353294aea3e851662f62306 https://www.encodeproject.org/files/ENCFF933DWT/@@download/ENCFF933DWT.bigBed mm10 released mild to moderate bottlenecking ENCFF331KZD bigWig signal p-value ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF013BFX, ENCFF940GMW 550542621 ENCODE Processing Pipeline cb5d6b714cd78862e4ff8cd22bbc9d27 https://www.encodeproject.org/files/ENCFF331KZD/@@download/ENCFF331KZD.bigWig mm10 released mild to moderate bottlenecking ENCFF893SWH bed narrowPeak peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF853OMH, ENCFF869IME 1547489 ENCODE Processing Pipeline e6ec94ae58f475d29d5a16a9984d14fc https://www.encodeproject.org/files/ENCFF893SWH/@@download/ENCFF893SWH.bed.gz mm10 released mild to moderate bottlenecking ENCFF612NMX bigBed narrowPeak peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1, 2 ENCFF945JYO 3825020 ENCODE Processing Pipeline 71c756922a4f8ce312ee612618ea209c https://www.encodeproject.org/files/ENCFF612NMX/@@download/ENCFF612NMX.bigBed mm10 released mild to moderate bottlenecking ENCFF883BAO bigWig signal p-value ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1, 2 ENCFF013BFX, ENCFF853OMH, ENCFF869IME, ENCFF940GMW 937896376 ENCODE Processing Pipeline b1ea3345a815d68fa190b8337447156d https://www.encodeproject.org/files/ENCFF883BAO/@@download/ENCFF883BAO.bigWig mm10 released mild to moderate bottlenecking ENCFF055VJJ bigWig fold change over control ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF013BFX, ENCFF940GMW 578381590 ENCODE Processing Pipeline 66cf64f2f2a9af51517eb8aef2070f08 https://www.encodeproject.org/files/ENCFF055VJJ/@@download/ENCFF055VJJ.bigWig mm10 released mild to moderate bottlenecking ENCFF183AMG bigWig fold change over control ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF853OMH, ENCFF869IME 681718827 ENCODE Processing Pipeline 6d6980e1e692f563003b93e5d1674de7 https://www.encodeproject.org/files/ENCFF183AMG/@@download/ENCFF183AMG.bigWig mm10 released mild to moderate bottlenecking ENCFF457RQC bigBed narrowPeak replicated peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1, 2 ENCFF928QGS 1875604 ENCODE Processing Pipeline 206b267c2c523d1192980fd8438f4803 https://www.encodeproject.org/files/ENCFF457RQC/@@download/ENCFF457RQC.bigBed mm10 released mild to moderate bottlenecking ENCFF442KVI bigWig fold change over control ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1, 2 ENCFF013BFX, ENCFF853OMH, ENCFF869IME, ENCFF940GMW 1206077051 ENCODE Processing Pipeline 25af2e7bf849b610440ccdc54a99d5ea https://www.encodeproject.org/files/ENCFF442KVI/@@download/ENCFF442KVI.bigWig mm10 released mild to moderate bottlenecking ENCFF928QGS bed narrowPeak replicated peaks ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1, 2 ENCFF640UNG, ENCFF893SWH, ENCFF945JYO 865047 ENCODE Processing Pipeline f172a3e59077a1c32790724c4c85a96f https://www.encodeproject.org/files/ENCFF928QGS/@@download/ENCFF928QGS.bed.gz mm10 released mild to moderate bottlenecking ENCFF768HAN fastq reads ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1362824307 Bing Ren, UCSD 34a582697d6f99824fb6431983b8db78 SRA:SRR3652201 https://www.encodeproject.org/files/ENCFF768HAN/@@download/ENCFF768HAN.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF707YKI fastq reads ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1501567537 Bing Ren, UCSD a7db199718f15fd39a3a34ec4ad91287 SRA:SRR3652200 https://www.encodeproject.org/files/ENCFF707YKI/@@download/ENCFF707YKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF257DBI fastq reads ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1053512819 Bing Ren, UCSD a0298b4c85786f8e1524ecd4fcd3959d SRA:SRR3652202 https://www.encodeproject.org/files/ENCFF257DBI/@@download/ENCFF257DBI.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF508KIW bam alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF257DBI, ENCFF768HAN, ENCFF806TVZ 1854510432 ENCODE Processing Pipeline 224fcdc3097d652f1ad9a266559dded2 https://www.encodeproject.org/files/ENCFF508KIW/@@download/ENCFF508KIW.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF178FEU bam alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF707YKI, ENCFF806TVZ 1277277032 ENCODE Processing Pipeline b52bae9b3bcab4eae3543a3e55d68450 https://www.encodeproject.org/files/ENCFF178FEU/@@download/ENCFF178FEU.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF773JGU bigBed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF514BZQ 3459335 ENCODE Processing Pipeline 3e59165385f9c440dc335a3db746d56d https://www.encodeproject.org/files/ENCFF773JGU/@@download/ENCFF773JGU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF514BZQ bed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF178FEU, ENCFF881FJP 1307931 ENCODE Processing Pipeline 7e213042313fb6dae56d9792f17a8255 https://www.encodeproject.org/files/ENCFF514BZQ/@@download/ENCFF514BZQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF540HLB bigBed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF580DST 3994814 ENCODE Processing Pipeline 2eb747e5bcbeb4fa55ff73244a3d2cf8 https://www.encodeproject.org/files/ENCFF540HLB/@@download/ENCFF540HLB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF073HGC bigWig signal p-value ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF178FEU, ENCFF881FJP 919557111 ENCODE Processing Pipeline bf351565d6bb9d08ef3cf1c91f4fec09 https://www.encodeproject.org/files/ENCFF073HGC/@@download/ENCFF073HGC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF418ICM bigBed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF437GGU 3909884 ENCODE Processing Pipeline cf2f39260310fe1fa603db012cbf9e26 https://www.encodeproject.org/files/ENCFF418ICM/@@download/ENCFF418ICM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF580DST bed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF508KIW, ENCFF881FJP 1540112 ENCODE Processing Pipeline 9dba5412cfa3b920cb20fb0b6374e324 https://www.encodeproject.org/files/ENCFF580DST/@@download/ENCFF580DST.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF437GGU bed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF178FEU, ENCFF508KIW, ENCFF881FJP 1542120 ENCODE Processing Pipeline d3b5200cdbc2f42ce7f3d50586fc63d0 https://www.encodeproject.org/files/ENCFF437GGU/@@download/ENCFF437GGU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF203TNF bigWig signal p-value ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF178FEU, ENCFF508KIW, ENCFF881FJP 999774490 ENCODE Processing Pipeline 9b1da25cd4d1616c972dd5560efa7fdf https://www.encodeproject.org/files/ENCFF203TNF/@@download/ENCFF203TNF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF289EWR bigWig signal p-value ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF508KIW, ENCFF881FJP 1022074803 ENCODE Processing Pipeline d5b779efde733cf565de601cfe429196 https://www.encodeproject.org/files/ENCFF289EWR/@@download/ENCFF289EWR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF894SJF bigWig fold change over control ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF508KIW, ENCFF881FJP 931251780 ENCODE Processing Pipeline 9239817ae80d58f233f1985ea2a116c0 https://www.encodeproject.org/files/ENCFF894SJF/@@download/ENCFF894SJF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF006HJM bigWig fold change over control ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF178FEU, ENCFF881FJP 824828800 ENCODE Processing Pipeline cccc4a480479084444881d55dc587820 https://www.encodeproject.org/files/ENCFF006HJM/@@download/ENCFF006HJM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF201EGU bigWig fold change over control ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF178FEU, ENCFF508KIW, ENCFF881FJP 1291919257 ENCODE Processing Pipeline dec23b60ee410ab8aa1f065ae9ba350b https://www.encodeproject.org/files/ENCFF201EGU/@@download/ENCFF201EGU.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF133TCH bigBed narrowPeak replicated peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF088IJV 2416155 ENCODE Processing Pipeline ac47410a90dd59ddfa412f3ef3fc752b https://www.encodeproject.org/files/ENCFF133TCH/@@download/ENCFF133TCH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF088IJV bed narrowPeak replicated peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF437GGU, ENCFF514BZQ, ENCFF580DST 1202418 ENCODE Processing Pipeline 3b74ca03656cac22a6b4e40c8604c9b2 https://www.encodeproject.org/files/ENCFF088IJV/@@download/ENCFF088IJV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF742XUS bam unfiltered alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF257DBI, ENCFF768HAN 2861684330 ENCODE Processing Pipeline 8926fae81ab945b9e496755fe9e4e484 https://www.encodeproject.org/files/ENCFF742XUS/@@download/ENCFF742XUS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF309GLO bam unfiltered alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF707YKI 1803785211 ENCODE Processing Pipeline 0bd7cd286e356a49e563752afdde4787 https://www.encodeproject.org/files/ENCFF309GLO/@@download/ENCFF309GLO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF826GUO bam alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF257DBI, ENCFF768HAN 1854163080 ENCODE Processing Pipeline def0880caec2d8d006488e5f1a416737 https://www.encodeproject.org/files/ENCFF826GUO/@@download/ENCFF826GUO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF027UTM bam alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF707YKI 1277018492 ENCODE Processing Pipeline c8153c2e5099b3ae2e334c85ac5cd106 https://www.encodeproject.org/files/ENCFF027UTM/@@download/ENCFF027UTM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF748RTC bed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF027UTM, ENCFF209HPI, ENCFF634NAV 1320223 ENCODE Processing Pipeline ac85484f2f1b0dde634cf50d960b1b4d https://www.encodeproject.org/files/ENCFF748RTC/@@download/ENCFF748RTC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF753PQC bed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF826GUO 1508071 ENCODE Processing Pipeline 82e374408d13c5decd788b7b21e33a5f https://www.encodeproject.org/files/ENCFF753PQC/@@download/ENCFF753PQC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF045TRW bed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF027UTM, ENCFF209HPI, ENCFF634NAV, ENCFF826GUO 1681357 ENCODE Processing Pipeline 9852048fd405e2c7615a7d88eab5f45a https://www.encodeproject.org/files/ENCFF045TRW/@@download/ENCFF045TRW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF750JNG bigBed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF748RTC 3488612 ENCODE Processing Pipeline 6b0929831a544c3d883562be23fa356d https://www.encodeproject.org/files/ENCFF750JNG/@@download/ENCFF750JNG.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF897NZZ bigBed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF753PQC 3916832 ENCODE Processing Pipeline c10457f2984df4a1b50e36b0253fca58 https://www.encodeproject.org/files/ENCFF897NZZ/@@download/ENCFF897NZZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF213YWL bigBed narrowPeak peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF045TRW 4244881 ENCODE Processing Pipeline 4ea8d608460079acf33925f3cd84f413 https://www.encodeproject.org/files/ENCFF213YWL/@@download/ENCFF213YWL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF922WQA bigWig signal p-value ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF027UTM, ENCFF209HPI, ENCFF634NAV 860436938 ENCODE Processing Pipeline ff0e7111b75c6edf53a28a859065d3ac https://www.encodeproject.org/files/ENCFF922WQA/@@download/ENCFF922WQA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF826OVV bigWig signal p-value ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF826GUO 943261541 ENCODE Processing Pipeline cf24e4e4bc70bef4aabcb782191fe598 https://www.encodeproject.org/files/ENCFF826OVV/@@download/ENCFF826OVV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF021APV bigWig signal p-value ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF027UTM, ENCFF209HPI, ENCFF634NAV, ENCFF826GUO 1213756087 ENCODE Processing Pipeline 8adb630e4db00196d0c496c483b2766a https://www.encodeproject.org/files/ENCFF021APV/@@download/ENCFF021APV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF946FPJ bigWig fold change over control ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF027UTM, ENCFF209HPI, ENCFF634NAV 820911719 ENCODE Processing Pipeline b4a441f37e9ae4148154913fddfa4ce0 https://www.encodeproject.org/files/ENCFF946FPJ/@@download/ENCFF946FPJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF647MWV bigWig fold change over control ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF826GUO 1043623506 ENCODE Processing Pipeline 764b017a43f14e37fcc75060809fef64 https://www.encodeproject.org/files/ENCFF647MWV/@@download/ENCFF647MWV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF290NHP bigWig fold change over control ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF027UTM, ENCFF209HPI, ENCFF634NAV, ENCFF826GUO 1336714727 ENCODE Processing Pipeline 4ce97e793b16efd64225fe946b5a9626 https://www.encodeproject.org/files/ENCFF290NHP/@@download/ENCFF290NHP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF247JED bigBed narrowPeak replicated peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF399KKD 2497476 ENCODE Processing Pipeline 873c526f268e11011dcd272200470e02 https://www.encodeproject.org/files/ENCFF247JED/@@download/ENCFF247JED.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF399KKD bed narrowPeak replicated peaks ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF045TRW, ENCFF748RTC, ENCFF753PQC 1245536 ENCODE Processing Pipeline ceefb8af19b03b32f014c43ed3cbaf2f https://www.encodeproject.org/files/ENCFF399KKD/@@download/ENCFF399KKD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF160DPX fastq reads ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1098463981 Richard Myers, HAIB 465832429aad4619bda4baefaeead1b2 SRA:SRR5112343 https://www.encodeproject.org/files/ENCFF160DPX/@@download/ENCFF160DPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF494VBT/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF323QPQ fastq reads ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1638750335 Richard Myers, HAIB 5ef3412bf50e7d9040bd560abd09f431 SRA:SRR5112342 https://www.encodeproject.org/files/ENCFF323QPQ/@@download/ENCFF323QPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF494VBT/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF721EAL bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF160DPX, ENCFF806TVZ 818881245 ENCODE Processing Pipeline 736682ece8427aa237d4736c40830b58 https://www.encodeproject.org/files/ENCFF721EAL/@@download/ENCFF721EAL.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF431QXA bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF323QPQ, ENCFF806TVZ 1145204991 ENCODE Processing Pipeline d3d7fc93d4a43ebf96ec19ab366d5aa0 https://www.encodeproject.org/files/ENCFF431QXA/@@download/ENCFF431QXA.bam mm10-minimal archived mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF900BCK bam unfiltered alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 1105735412 ENCODE Processing Pipeline c15ff0e17937baa9033c624b9544d707 https://www.encodeproject.org/files/ENCFF900BCK/@@download/ENCFF900BCK.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF164BCI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1145124183 ENCODE Processing Pipeline 1e9280a53f99f767bd2c49c49d0a6432 https://www.encodeproject.org/files/ENCFF164BCI/@@download/ENCFF164BCI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF820ADI bam unfiltered alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1644570384 ENCODE Processing Pipeline 50689c6cf19c988609332a96cafd3507 https://www.encodeproject.org/files/ENCFF820ADI/@@download/ENCFF820ADI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF262NGI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 818813553 ENCODE Processing Pipeline bd23e3d0832e0da66339261d251459ee https://www.encodeproject.org/files/ENCFF262NGI/@@download/ENCFF262NGI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF207OHJ bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 383789164 ENCODE Processing Pipeline 019ef069f9e499a49e4af13933b24f0d https://www.encodeproject.org/files/ENCFF207OHJ/@@download/ENCFF207OHJ.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF433ZAW bed narrowPeak conservative idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039DHV, ENCFF169BDL, ENCFF547MET, ENCFF726SOK 1036085 ENCODE Processing Pipeline 28e3c64303b8e7e448aa0e2a9e435783 https://www.encodeproject.org/files/ENCFF433ZAW/@@download/ENCFF433ZAW.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF057GJF bed narrowPeak optimal idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039DHV, ENCFF169BDL, ENCFF547MET, ENCFF726SOK 1083288 ENCODE Processing Pipeline 4d47e1a1b466b510769fd75fbead8492 https://www.encodeproject.org/files/ENCFF057GJF/@@download/ENCFF057GJF.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF163KJU bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 618540015 ENCODE Processing Pipeline a41b4c054e95946a4b7f5ef116f92c53 https://www.encodeproject.org/files/ENCFF163KJU/@@download/ENCFF163KJU.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF699FQY bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 507008471 ENCODE Processing Pipeline d833f0ba51fb35710bca6c902852f70b https://www.encodeproject.org/files/ENCFF699FQY/@@download/ENCFF699FQY.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF818BGB bigBed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF169BDL 11241482 ENCODE Processing Pipeline f7ed4a2d2f99bec9cfb6da875d6f8630 https://www.encodeproject.org/files/ENCFF818BGB/@@download/ENCFF818BGB.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF562MDY bigBed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF039DHV 11188447 ENCODE Processing Pipeline dbbf2654348a7266055408a9fcd6e000 https://www.encodeproject.org/files/ENCFF562MDY/@@download/ENCFF562MDY.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF854MNX bigBed narrowPeak conservative idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF433ZAW 1610432 ENCODE Processing Pipeline 10469ef94481c703d572da10780a94ea https://www.encodeproject.org/files/ENCFF854MNX/@@download/ENCFF854MNX.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF113BDJ bigBed narrowPeak optimal idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF057GJF 2143739 ENCODE Processing Pipeline 8e8293953748feb401808499b7806f4e https://www.encodeproject.org/files/ENCFF113BDJ/@@download/ENCFF113BDJ.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF309UUX bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 579601515 ENCODE Processing Pipeline 2736c09e01205752f85b819b2a501fb5 https://www.encodeproject.org/files/ENCFF309UUX/@@download/ENCFF309UUX.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF169BDL bed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 5489873 ENCODE Processing Pipeline 26271235fb0bf14240483f5b3023dd70 https://www.encodeproject.org/files/ENCFF169BDL/@@download/ENCFF169BDL.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF726SOK bed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 6089229 ENCODE Processing Pipeline 4da5bd1179a7707dd80be3179d35d448 https://www.encodeproject.org/files/ENCFF726SOK/@@download/ENCFF726SOK.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF844FZQ bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 529893748 ENCODE Processing Pipeline 5affc0e4037832229ed3a7db4852c1b2 https://www.encodeproject.org/files/ENCFF844FZQ/@@download/ENCFF844FZQ.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF581XWU bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 746046497 ENCODE Processing Pipeline 6b533e2b6d553496fdf025377c97500d https://www.encodeproject.org/files/ENCFF581XWU/@@download/ENCFF581XWU.bigWig mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF039DHV bed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 5268750 ENCODE Processing Pipeline 53b714363c6e4bba3e1019bb99f87003 https://www.encodeproject.org/files/ENCFF039DHV/@@download/ENCFF039DHV.bed.gz mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF973JHQ bigBed narrowPeak peaks and background as input for IDR ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF726SOK 11297008 ENCODE Processing Pipeline 4ecb8ad1c4e2194b1c7618f7e399421e https://www.encodeproject.org/files/ENCFF973JHQ/@@download/ENCFF973JHQ.bigBed mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF782XDY fastq reads ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 1348376498 Christina Leslie, MSKCC f426cde307f2174a6f5ed711de8f1cbf https://www.encodeproject.org/files/ENCFF782XDY/@@download/ENCFF782XDY.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF545VQR fastq reads ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 1485820491 Christina Leslie, MSKCC ac458a3399266eab087ef0ad1363b8a5 https://www.encodeproject.org/files/ENCFF545VQR/@@download/ENCFF545VQR.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF173DDT bam alignments ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF782XDY 939007698 Christina Leslie, MSKCC 5a67d14cf78349cb4023c2b219f19a5c https://www.encodeproject.org/files/ENCFF173DDT/@@download/ENCFF173DDT.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF800XUG bam alignments ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF545VQR 1037922441 Christina Leslie, MSKCC 9720a6f77a8967b4b843cc0238fbc236 https://www.encodeproject.org/files/ENCFF800XUG/@@download/ENCFF800XUG.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF901FJK tsv enrichment ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF173DDT, ENCFF608UQC 275264 Christina Leslie, MSKCC aec7bc4a20ea15dd65928662ca342e12 https://www.encodeproject.org/files/ENCFF901FJK/@@download/ENCFF901FJK.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF897FPV tsv enrichment ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF608UQC, ENCFF800XUG 276227 Christina Leslie, MSKCC 314b402447afae562cb6fcecdfba6436 https://www.encodeproject.org/files/ENCFF897FPV/@@download/ENCFF897FPV.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF942XUX fastq reads ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 983023916 Christina Leslie, MSKCC f5a65ab95bf14fe621ed747a207233c0 https://www.encodeproject.org/files/ENCFF942XUX/@@download/ENCFF942XUX.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, missing donor missing controlled_by, unreplicated experiment ENCFF380RAF fastq reads ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 867538842 Christina Leslie, MSKCC 42c929638a152d0428daa87dc449313b https://www.encodeproject.org/files/ENCFF380RAF/@@download/ENCFF380RAF.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, missing donor missing controlled_by, unreplicated experiment ENCFF887PHY bam alignments ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF942XUX 772643198 Christina Leslie, MSKCC 29164b784f55e7e847d896785880d0fc https://www.encodeproject.org/files/ENCFF887PHY/@@download/ENCFF887PHY.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF093UMJ bam alignments ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF380RAF 706225410 Christina Leslie, MSKCC a6a39f5691307f8da225150c513f552d https://www.encodeproject.org/files/ENCFF093UMJ/@@download/ENCFF093UMJ.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF855JWA tsv enrichment ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF608UQC, ENCFF887PHY 271040 Christina Leslie, MSKCC e5390f48637e631acb18f2b79b682a1a https://www.encodeproject.org/files/ENCFF855JWA/@@download/ENCFF855JWA.tsv mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF045JIJ tsv enrichment ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF093UMJ, ENCFF608UQC 269587 Christina Leslie, MSKCC 016e539d0012637caf4c608be16318c8 https://www.encodeproject.org/files/ENCFF045JIJ/@@download/ENCFF045JIJ.tsv mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF001MEJ bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MFA 4844724445 Ross Hardison, PennState 361dbf78a57b7824cd944d3df617b9c2 https://www.encodeproject.org/files/ENCFF001MEJ/@@download/ENCFF001MEJ.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEK bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MFC 5584871901 Ross Hardison, PennState af3c6c11cc3052b045bbcf3bea84b4d1 https://www.encodeproject.org/files/ENCFF001MEK/@@download/ENCFF001MEK.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEL bigBed broadPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YEB 2212688 Ross Hardison, PennState e408dbf90f072fba45249907b80b2b60 https://www.encodeproject.org/files/ENCFF001MEL/@@download/ENCFF001MEL.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEM bigBed broadPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YEC 1896421 Ross Hardison, PennState 88af2d3f0f698ee4b513b75014e449f9 https://www.encodeproject.org/files/ENCFF001MEM/@@download/ENCFF001MEM.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEN bigBed broadPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YED 2127271 Ross Hardison, PennState bae9caf86b2e4964324a8136d5cdaf24 https://www.encodeproject.org/files/ENCFF001MEN/@@download/ENCFF001MEN.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MEO bigWig signal ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 6016770571 Ross Hardison, PennState b1caada2317031c7bd2bed9de38a7589 https://www.encodeproject.org/files/ENCFF001MEO/@@download/ENCFF001MEO.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MEP bigWig signal ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5473671870 Ross Hardison, PennState 03eb64c0c37b8c212248a0aa8af52fd5 https://www.encodeproject.org/files/ENCFF001MEP/@@download/ENCFF001MEP.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MER bigWig signal ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 6456312756 Ross Hardison, PennState 6723fa046ee63c88d5ca9ebf9d55d178 https://www.encodeproject.org/files/ENCFF001MER/@@download/ENCFF001MER.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MFA fastq reads ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4349094502 Ross Hardison, PennState 36133e23edd18a025777a9ebef81150a https://www.encodeproject.org/files/ENCFF001MFA/@@download/ENCFF001MFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released inconsistent platforms biological replicates with identical biosample ENCFF001MFC fastq reads ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4978544694 Ross Hardison, PennState 68bca405495b6a8f1a6c7e49f9664a1d https://www.encodeproject.org/files/ENCFF001MFC/@@download/ENCFF001MFC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUT/ released inconsistent platforms, inconsistent control read length biological replicates with identical biosample ENCFF001YEB bed broadPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1268198 Ross Hardison, PennState 4132641494809f778d1f10fe9317c71a https://www.encodeproject.org/files/ENCFF001YEB/@@download/ENCFF001YEB.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YEC bed broadPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1038998 Ross Hardison, PennState 7f2c496fbf6d467e996dcbe2e49b3845 https://www.encodeproject.org/files/ENCFF001YEC/@@download/ENCFF001YEC.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YED bed broadPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1149008 Ross Hardison, PennState ba7eff0d9c6a3b4ee355bf2aeeff35b6 https://www.encodeproject.org/files/ENCFF001YED/@@download/ENCFF001YED.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF972JVK bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MFC, ENCFF806TVZ 4442609940 ENCODE Processing Pipeline 7012212fe72cfea050c4f36271668b35 https://www.encodeproject.org/files/ENCFF972JVK/@@download/ENCFF972JVK.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF781OEI bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MFA, ENCFF806TVZ 3943697654 ENCODE Processing Pipeline 184b79bb8818d3d698e416b8a6f6fa98 https://www.encodeproject.org/files/ENCFF781OEI/@@download/ENCFF781OEI.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF157ISM bam unfiltered alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MFA, ENCFF018NEO 4228537351 ENCODE Processing Pipeline 9a655ddc277043deac0a641cdc1816c9 https://www.encodeproject.org/files/ENCFF157ISM/@@download/ENCFF157ISM.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF250SKR bam unfiltered alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MFC, ENCFF018NEO 4897312325 ENCODE Processing Pipeline 92436e3f1f30aaa68bafcd620ca79cc0 https://www.encodeproject.org/files/ENCFF250SKR/@@download/ENCFF250SKR.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF738GHN bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MFC, ENCFF018NEO 3722173359 ENCODE Processing Pipeline 242d15fadb550ecf01980177fdada4ec https://www.encodeproject.org/files/ENCFF738GHN/@@download/ENCFF738GHN.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF515HLC bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MFA, ENCFF018NEO 3250223858 ENCODE Processing Pipeline dd746926208637017b68ff96bbef51bd https://www.encodeproject.org/files/ENCFF515HLC/@@download/ENCFF515HLC.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF191RZO bed narrowPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF738GHN, ENCFF769SND, ENCFF887RWQ 5451486 ENCODE Processing Pipeline 59b938a0b7dd881bb1d52c0e909a4ba4 https://www.encodeproject.org/files/ENCFF191RZO/@@download/ENCFF191RZO.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF172KQM bed narrowPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF515HLC, ENCFF769SND, ENCFF887RWQ 5186823 ENCODE Processing Pipeline 70a28f169360bcf83c76cf545eac9f9b https://www.encodeproject.org/files/ENCFF172KQM/@@download/ENCFF172KQM.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF686KTB bed narrowPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF515HLC, ENCFF738GHN, ENCFF769SND, ENCFF887RWQ 5663556 ENCODE Processing Pipeline 92cf8d6f84324ee138d283d1d88204f5 https://www.encodeproject.org/files/ENCFF686KTB/@@download/ENCFF686KTB.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF871UFT bigBed narrowPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF172KQM 11739967 ENCODE Processing Pipeline a5787418018778666efdb689f776fb9e https://www.encodeproject.org/files/ENCFF871UFT/@@download/ENCFF871UFT.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF231FOL bigBed narrowPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF686KTB 13201749 ENCODE Processing Pipeline ffd7f4db6f76244c98daf94e2397b041 https://www.encodeproject.org/files/ENCFF231FOL/@@download/ENCFF231FOL.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF962LKQ bigBed narrowPeak peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF191RZO 13431089 ENCODE Processing Pipeline 946eb9ef64d720732fa2c51f654580c8 https://www.encodeproject.org/files/ENCFF962LKQ/@@download/ENCFF962LKQ.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF056AUP bigWig signal p-value ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF738GHN, ENCFF769SND, ENCFF887RWQ 1472766173 ENCODE Processing Pipeline 68dace8efead5d0ecdc45347f2de1a43 https://www.encodeproject.org/files/ENCFF056AUP/@@download/ENCFF056AUP.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF226RTF bigWig signal p-value ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF515HLC, ENCFF769SND, ENCFF887RWQ 1343402906 ENCODE Processing Pipeline 3ecd839107d45eb2ac3a3e977cd72ea2 https://www.encodeproject.org/files/ENCFF226RTF/@@download/ENCFF226RTF.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF684IGU bigWig signal p-value ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF515HLC, ENCFF738GHN, ENCFF769SND, ENCFF887RWQ 1737913048 ENCODE Processing Pipeline ed02550353fe8b3f7fa88bd4dd1b6e2f https://www.encodeproject.org/files/ENCFF684IGU/@@download/ENCFF684IGU.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF840YZA bigWig fold change over control ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF738GHN, ENCFF769SND, ENCFF887RWQ 1514096689 ENCODE Processing Pipeline a514a438708f7555d6ac3cd43735513f https://www.encodeproject.org/files/ENCFF840YZA/@@download/ENCFF840YZA.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF461UWN bigWig fold change over control ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF515HLC, ENCFF769SND, ENCFF887RWQ 1253201377 ENCODE Processing Pipeline 92be116a27631106ce0cd11dcc2d632b https://www.encodeproject.org/files/ENCFF461UWN/@@download/ENCFF461UWN.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF331NCU bigWig fold change over control ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF515HLC, ENCFF738GHN, ENCFF769SND, ENCFF887RWQ 1968223123 ENCODE Processing Pipeline 9c9de5a2f91ebc3bd7cb5de3867d6fdc https://www.encodeproject.org/files/ENCFF331NCU/@@download/ENCFF331NCU.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF661DBM bigBed narrowPeak replicated peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF238ZHH 9630688 ENCODE Processing Pipeline d71d2cd27056350cf68b699527b89707 https://www.encodeproject.org/files/ENCFF661DBM/@@download/ENCFF661DBM.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF238ZHH bed narrowPeak replicated peaks ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF172KQM, ENCFF191RZO, ENCFF686KTB 5472510 ENCODE Processing Pipeline 52762ca686d42d1a4b565201bd646441 https://www.encodeproject.org/files/ENCFF238ZHH/@@download/ENCFF238ZHH.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF001ZHD fastq reads ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 45 single-ended 2072713637 Ross Hardison, PennState a1ba911be7434a7e7daf27fe916474b1 https://www.encodeproject.org/files/ENCFF001ZHD/@@download/ENCFF001ZHD.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, control low read depth experiment not submitted to GEO ENCFF001ZHE bigWig signal ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 5135330204 Ross Hardison, PennState 67115576c5d7d66a0996199e4578c244 https://www.encodeproject.org/files/ENCFF001ZHE/@@download/ENCFF001ZHE.bigWig mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO ENCFF001ZHF fastq reads ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 45 single-ended 2397640727 Ross Hardison, PennState 360664147dc2e5108f2c385a810093e0 https://www.encodeproject.org/files/ENCFF001ZHF/@@download/ENCFF001ZHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, control low read depth experiment not submitted to GEO ENCFF001ZHG bigWig signal ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 4807157238 Ross Hardison, PennState c5d6aac1794abf1200c42534d7087657 https://www.encodeproject.org/files/ENCFF001ZHG/@@download/ENCFF001ZHG.bigWig mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from ENCFF001ZHI bam alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF001ZHD 2422169559 Ross Hardison, PennState 1e3877d5d228ede6049e78baf2064c52 https://www.encodeproject.org/files/ENCFF001ZHI/@@download/ENCFF001ZHI.bam mm9 released low read length, control low read depth experiment not submitted to GEO ENCFF001ZHJ bam alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF001ZHF 2699566495 Ross Hardison, PennState 0aec2a08cc33465d486e3a84183b7b52 https://www.encodeproject.org/files/ENCFF001ZHJ/@@download/ENCFF001ZHJ.bam mm9 released low read length, control low read depth experiment not submitted to GEO ENCFF001ZHK bigBed broadPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 2275153 Ross Hardison, PennState d5b7c4bb218fa8e90473f8e612811133 https://www.encodeproject.org/files/ENCFF001ZHK/@@download/ENCFF001ZHK.bigBed mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO ENCFF001ZHL bigBed broadPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 2744186 Ross Hardison, PennState 9181ab375a45481947f559aeca6cba76 https://www.encodeproject.org/files/ENCFF001ZHL/@@download/ENCFF001ZHL.bigBed mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO ENCFF001ZHH bigWig signal ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 5809911377 Ross Hardison, PennState b9c42098916c02d3813c31bf80f4c18b https://www.encodeproject.org/files/ENCFF001ZHH/@@download/ENCFF001ZHH.bigWig mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO ENCFF001ZHM bigBed broadPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2841440 Ross Hardison, PennState 546a30f5eb046c4fb8c57182e9454cdf https://www.encodeproject.org/files/ENCFF001ZHM/@@download/ENCFF001ZHM.bigBed mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO ENCFF001ZHN bam alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 4924130112 Ross Hardison, PennState dba5677089ecc3d141084d08f453641e https://www.encodeproject.org/files/ENCFF001ZHN/@@download/ENCFF001ZHN.bam mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO ENCFF251JZH bed broadPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE ENCFF001ZHM 1674584 ENCODE Consortium e6e3f202aaaf8f9d37bd624dbe9fac9b https://www.encodeproject.org/files/ENCFF251JZH/@@download/ENCFF251JZH.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO ENCFF176FFR bed broadPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 ENCFF001ZHL 1607839 ENCODE Consortium 36c450d981fe29925842b782cec5abf2 https://www.encodeproject.org/files/ENCFF176FFR/@@download/ENCFF176FFR.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO ENCFF529QXX bed broadPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 ENCFF001ZHK 1315653 ENCODE Consortium db3687e2f88fdf9016e63f2a4e4dc8f5 https://www.encodeproject.org/files/ENCFF529QXX/@@download/ENCFF529QXX.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO ENCFF125BJH bam unfiltered alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 45 ENCFF001ZHF, ENCFF018NEO 3091826846 ENCODE Processing Pipeline 2ba05740053952f2c7c9f4cb55e83459 https://www.encodeproject.org/files/ENCFF125BJH/@@download/ENCFF125BJH.bam mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF771XXN bam alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 45 ENCFF001ZHF, ENCFF018NEO 1491334893 ENCODE Processing Pipeline e3b4ce691f69acf5f5e1ce33528b523f https://www.encodeproject.org/files/ENCFF771XXN/@@download/ENCFF771XXN.bam mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF264MAW bam alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 45 ENCFF001ZHD, ENCFF018NEO 1535950103 ENCODE Processing Pipeline 3ed51027a39e86d1ffe4705ca9c94cdf https://www.encodeproject.org/files/ENCFF264MAW/@@download/ENCFF264MAW.bam mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF333UMH bam unfiltered alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 45 ENCFF001ZHD, ENCFF018NEO 2743698239 ENCODE Processing Pipeline fa95be2b46c1c7cd5e401341bded089c https://www.encodeproject.org/files/ENCFF333UMH/@@download/ENCFF333UMH.bam mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF289ATH bigWig fold change over control ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF111OFQ, ENCFF264MAW, ENCFF666VRA, ENCFF771XXN 1153237998 ENCODE Processing Pipeline 7ad902e23cf9d2a957c120e453fac981 https://www.encodeproject.org/files/ENCFF289ATH/@@download/ENCFF289ATH.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF093JWL bed narrowPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF111OFQ, ENCFF264MAW, ENCFF666VRA, ENCFF771XXN 3134622 ENCODE Processing Pipeline ddc1b7a725503e40555fd48029823af8 https://www.encodeproject.org/files/ENCFF093JWL/@@download/ENCFF093JWL.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF107RFU bigBed narrowPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF529JBA 5230697 ENCODE Processing Pipeline 58aef15cffa36edfb83047d3ea0e9e0a https://www.encodeproject.org/files/ENCFF107RFU/@@download/ENCFF107RFU.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF021NYL bigBed narrowPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF093JWL 8456061 ENCODE Processing Pipeline 1ee878fbe5d794d2fb8b1a3b3a22659b https://www.encodeproject.org/files/ENCFF021NYL/@@download/ENCFF021NYL.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF876KVU bigWig signal p-value ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF111OFQ, ENCFF771XXN 522839284 ENCODE Processing Pipeline 88c94c650fb9024363d9dfd422f1bd3f https://www.encodeproject.org/files/ENCFF876KVU/@@download/ENCFF876KVU.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF529JBA bed narrowPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF264MAW, ENCFF666VRA 2402908 ENCODE Processing Pipeline 0aff45d9875abbf84c145fd90a2d27e7 https://www.encodeproject.org/files/ENCFF529JBA/@@download/ENCFF529JBA.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF640ZWA bigBed narrowPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF402LXV 6261688 ENCODE Processing Pipeline fc191c9ac038f70e89a3df72bcc30a23 https://www.encodeproject.org/files/ENCFF640ZWA/@@download/ENCFF640ZWA.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF402LXV bed narrowPeak peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF111OFQ, ENCFF771XXN 2996910 ENCODE Processing Pipeline 3f29f7c169ee7dde231bdcde27b8820e https://www.encodeproject.org/files/ENCFF402LXV/@@download/ENCFF402LXV.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF539FGY bigWig signal p-value ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF264MAW, ENCFF666VRA 492784296 ENCODE Processing Pipeline fdb36f9259077652a268df159bc571ee https://www.encodeproject.org/files/ENCFF539FGY/@@download/ENCFF539FGY.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF498SXM bigWig signal p-value ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF111OFQ, ENCFF264MAW, ENCFF666VRA, ENCFF771XXN 1051202430 ENCODE Processing Pipeline 16f5be768395b1edca81abe1f2f4f351 https://www.encodeproject.org/files/ENCFF498SXM/@@download/ENCFF498SXM.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF961IIR bigWig fold change over control ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF111OFQ, ENCFF771XXN 559201168 ENCODE Processing Pipeline a19e460f21d475d271ff1a7ae1856cfa https://www.encodeproject.org/files/ENCFF961IIR/@@download/ENCFF961IIR.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF157IGU bigBed narrowPeak replicated peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF180LQA 5531885 ENCODE Processing Pipeline 31907e4de4ff0def898969ab4e855aca https://www.encodeproject.org/files/ENCFF157IGU/@@download/ENCFF157IGU.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF290SJJ bigWig fold change over control ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF264MAW, ENCFF666VRA 581032282 ENCODE Processing Pipeline 2ffe78a98bdcf6906fd42bf4a0fbacf8 https://www.encodeproject.org/files/ENCFF290SJJ/@@download/ENCFF290SJJ.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF180LQA bed narrowPeak replicated peaks ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF093JWL, ENCFF402LXV, ENCFF529JBA 2455730 ENCODE Processing Pipeline 2250da65c509a08bc01919db1d48f20a https://www.encodeproject.org/files/ENCFF180LQA/@@download/ENCFF180LQA.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF001ZGS fastq reads ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 45 single-ended 1893709063 Ross Hardison, PennState 8f04b5dcc4b59462a45e929e91269ce8 https://www.encodeproject.org/files/ENCFF001ZGS/@@download/ENCFF001ZGS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF001ZGT bigWig signal ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 4134553035 Ross Hardison, PennState 323163ae5146e31481bca3d26ce7e71b https://www.encodeproject.org/files/ENCFF001ZGT/@@download/ENCFF001ZGT.bigWig mm9 released low read length, control low read depth, low read depth missing derived_from, experiment not submitted to GEO ENCFF001ZGU fastq reads ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 45 single-ended 2059208337 Ross Hardison, PennState fcf3647f79e661bcbec14f6a63a487e3 https://www.encodeproject.org/files/ENCFF001ZGU/@@download/ENCFF001ZGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF001ZGV bigWig signal ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 4486510432 Ross Hardison, PennState 9f23753058fbc515c37ef495b50cbde2 https://www.encodeproject.org/files/ENCFF001ZGV/@@download/ENCFF001ZGV.bigWig mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO, missing derived_from ENCFF001ZGX bam alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF001ZGS 2239112311 Ross Hardison, PennState e3d3a6f518edf710a1175fd6c4725432 https://www.encodeproject.org/files/ENCFF001ZGX/@@download/ENCFF001ZGX.bam mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF001ZGY bam alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF001ZGU 2405542624 Ross Hardison, PennState 82df502b3039ad7e55589a9e8195354e https://www.encodeproject.org/files/ENCFF001ZGY/@@download/ENCFF001ZGY.bam mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF001ZGZ bigBed broadPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 5117798 Ross Hardison, PennState bf3796627c6415dda5649e99567388d7 https://www.encodeproject.org/files/ENCFF001ZGZ/@@download/ENCFF001ZGZ.bigBed mm9 released low read length, control low read depth, low read depth missing derived_from, experiment not submitted to GEO ENCFF001ZHA bigBed broadPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 5450028 Ross Hardison, PennState 7e1fb165750f815000bcfdbc4632f9b9 https://www.encodeproject.org/files/ENCFF001ZHA/@@download/ENCFF001ZHA.bigBed mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO, missing derived_from ENCFF001ZGW bigWig signal ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 5329972417 Ross Hardison, PennState b011be5b558a673d03e097e515c8c774 https://www.encodeproject.org/files/ENCFF001ZGW/@@download/ENCFF001ZGW.bigWig mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO, missing derived_from ENCFF001ZHB bigBed broadPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 5779042 Ross Hardison, PennState c95f226049fb3693f252ee3e421943f2 https://www.encodeproject.org/files/ENCFF001ZHB/@@download/ENCFF001ZHB.bigBed mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO, missing derived_from ENCFF001ZHC bam alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 4479028320 Ross Hardison, PennState c406a3eada29158aaee2ebf9c676e76e https://www.encodeproject.org/files/ENCFF001ZHC/@@download/ENCFF001ZHC.bam mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO, missing derived_from ENCFF816UWP bed broadPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 1 ENCFF001ZGZ 3374811 ENCODE Consortium 3b63a4de70ce388ead9a3891479b5f64 https://www.encodeproject.org/files/ENCFF816UWP/@@download/ENCFF816UWP.bed.gz mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF817CZF bed broadPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE ENCFF001ZHB 3837554 ENCODE Consortium 5c7c93940307ebb36bf22426da332cbf https://www.encodeproject.org/files/ENCFF817CZF/@@download/ENCFF817CZF.bed.gz mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF790UJA bed broadPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 1 ENCFF001ZHA 3586121 ENCODE Consortium 5f0ce02691b64271f7e72c2b94000395 https://www.encodeproject.org/files/ENCFF790UJA/@@download/ENCFF790UJA.bed.gz mm9 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF782MNV bam unfiltered alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 45 ENCFF001ZGS, ENCFF018NEO 2417339280 ENCODE Processing Pipeline 2d426c481c2446778eed52136d37c614 https://www.encodeproject.org/files/ENCFF782MNV/@@download/ENCFF782MNV.bam mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF166JZW bam alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 45 ENCFF001ZGS, ENCFF018NEO 2001617533 ENCODE Processing Pipeline 284dcf48b75a9c5999dd6ac306baaec1 https://www.encodeproject.org/files/ENCFF166JZW/@@download/ENCFF166JZW.bam mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF914FIZ bam unfiltered alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 45 ENCFF001ZGU, ENCFF018NEO 2598313928 ENCODE Processing Pipeline 7985e5307fe2f199498d47ab9705aba1 https://www.encodeproject.org/files/ENCFF914FIZ/@@download/ENCFF914FIZ.bam mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF551OFV bam alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 45 ENCFF001ZGU, ENCFF018NEO 2125530258 ENCODE Processing Pipeline 5cfac2ef004b3990b0dce8565e58d517 https://www.encodeproject.org/files/ENCFF551OFV/@@download/ENCFF551OFV.bam mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF763ESC bed narrowPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF111OFQ, ENCFF551OFV, ENCFF666VRA 4931399 ENCODE Processing Pipeline 057066e7ac2f6023880b7494457f80d0 https://www.encodeproject.org/files/ENCFF763ESC/@@download/ENCFF763ESC.bed.gz mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF274NIL bigBed narrowPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF763ESC 11486413 ENCODE Processing Pipeline c40088538559cadf23d4a1e5c3addf4e https://www.encodeproject.org/files/ENCFF274NIL/@@download/ENCFF274NIL.bigBed mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF322HRI bigBed narrowPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF166CEC 11517849 ENCODE Processing Pipeline 58e1279ce93ac19cfde55a66aede914c https://www.encodeproject.org/files/ENCFF322HRI/@@download/ENCFF322HRI.bigBed mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF572AKN bigBed narrowPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF409VDJ 11175232 ENCODE Processing Pipeline 701c1bf7505544df5583a0173366ac54 https://www.encodeproject.org/files/ENCFF572AKN/@@download/ENCFF572AKN.bigBed mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF530GYO bigWig signal p-value ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF166JZW, ENCFF666VRA 726788432 ENCODE Processing Pipeline 5efb445ba3a4765f408522e4c094916a https://www.encodeproject.org/files/ENCFF530GYO/@@download/ENCFF530GYO.bigWig mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF277ZWX bigWig fold change over control ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF166JZW, ENCFF666VRA 625322063 ENCODE Processing Pipeline 285b6dd2c787c0fb57ac151af74341eb https://www.encodeproject.org/files/ENCFF277ZWX/@@download/ENCFF277ZWX.bigWig mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF763GNF bed narrowPeak replicated peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF166CEC, ENCFF409VDJ, ENCFF763ESC 4822449 ENCODE Processing Pipeline d58b580bed930cfb3b5ec25da49d5d97 https://www.encodeproject.org/files/ENCFF763GNF/@@download/ENCFF763GNF.bed.gz mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF290DOG bigBed narrowPeak replicated peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF763GNF 8704860 ENCODE Processing Pipeline e4df4b375077cf5ef1e66d7bdd21f1c7 https://www.encodeproject.org/files/ENCFF290DOG/@@download/ENCFF290DOG.bigBed mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF409VDJ bed narrowPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 ENCFF166JZW, ENCFF666VRA 4757888 ENCODE Processing Pipeline 937d1b82d2384ec526383b6872ad3969 https://www.encodeproject.org/files/ENCFF409VDJ/@@download/ENCFF409VDJ.bed.gz mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF166CEC bed narrowPeak peaks ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF111OFQ, ENCFF166JZW, ENCFF551OFV, ENCFF666VRA 4845074 ENCODE Processing Pipeline b6088d54b7155b1432ba98cfbbaf6cb7 https://www.encodeproject.org/files/ENCFF166CEC/@@download/ENCFF166CEC.bed.gz mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF983GSL bigWig signal p-value ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF111OFQ, ENCFF551OFV, ENCFF666VRA 809632492 ENCODE Processing Pipeline 8a87f6cf418a63be0a305c5a5ad4edd4 https://www.encodeproject.org/files/ENCFF983GSL/@@download/ENCFF983GSL.bigWig mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF282RLA bigWig signal p-value ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF111OFQ, ENCFF166JZW, ENCFF551OFV, ENCFF666VRA 887933581 ENCODE Processing Pipeline a7a48ad162439ccd452b42e5e37ded8c https://www.encodeproject.org/files/ENCFF282RLA/@@download/ENCFF282RLA.bigWig mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF102VQR bigWig fold change over control ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 ENCFF111OFQ, ENCFF551OFV, ENCFF666VRA 807132572 ENCODE Processing Pipeline 397ed3e1e78a847b18483a105f4e689f https://www.encodeproject.org/files/ENCFF102VQR/@@download/ENCFF102VQR.bigWig mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF043LTY bigWig fold change over control ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1, 2 ENCFF111OFQ, ENCFF166JZW, ENCFF551OFV, ENCFF666VRA 1242742713 ENCODE Processing Pipeline 26cf4898dea3a66a631f5ec2149a5bf1 https://www.encodeproject.org/files/ENCFF043LTY/@@download/ENCFF043LTY.bigWig mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF002BXW fastq reads ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1024807998 Bing Ren, UCSD c88872964b4db3d62c5ce03aeffd426d SRA:SRR3653066 https://www.encodeproject.org/files/ENCFF002BXW/@@download/ENCFF002BXW.fastq.gz Illumina HiSeq 2500 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF118FEW fastq reads ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 238676180 Bing Ren, UCSD 8a921c02db71586f05441d1cf71fc54e SRA:SRR3653063 https://www.encodeproject.org/files/ENCFF118FEW/@@download/ENCFF118FEW.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF249RWY fastq reads ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 2 36 single-ended 350733380 Bing Ren, UCSD fc06a99f821a6e290324133aaf94228f SRA:SRR3653064 https://www.encodeproject.org/files/ENCFF249RWY/@@download/ENCFF249RWY.fastq.gz Illumina HiSeq 2500 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF482JNU fastq reads ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 3 50 single-ended 429675305 Bing Ren, UCSD dedeb767953023916fc8d0d68f57e02c SRA:SRR3653065 https://www.encodeproject.org/files/ENCFF482JNU/@@download/ENCFF482JNU.fastq.gz Illumina HiSeq 2500 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF529OUC bam unfiltered alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXW, ENCFF806TVZ 1313949545 ENCODE Processing Pipeline 3bad35c4583448182d2f0fb63fd70442 https://www.encodeproject.org/files/ENCFF529OUC/@@download/ENCFF529OUC.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF489FIL bam unfiltered alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF118FEW, ENCFF249RWY, ENCFF482JNU, ENCFF806TVZ 1280103900 ENCODE Processing Pipeline 98ab393998de0c7b0acff957f3b94200 https://www.encodeproject.org/files/ENCFF489FIL/@@download/ENCFF489FIL.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF578PIN bam alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF118FEW, ENCFF249RWY, ENCFF482JNU, ENCFF806TVZ 703940133 ENCODE Processing Pipeline 3515de2654df42c571be039cf9ea464e https://www.encodeproject.org/files/ENCFF578PIN/@@download/ENCFF578PIN.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF439PVF bam alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXW, ENCFF806TVZ 777493645 ENCODE Processing Pipeline 9075b2c14eef401fe5316164df8f94c2 https://www.encodeproject.org/files/ENCFF439PVF/@@download/ENCFF439PVF.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF680AIX bam unfiltered alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXW, ENCFF018NEO 1315859761 ENCODE Processing Pipeline 54932db4806c50622166324503536ec3 https://www.encodeproject.org/files/ENCFF680AIX/@@download/ENCFF680AIX.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF749WCS bam alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXW, ENCFF018NEO 777186155 ENCODE Processing Pipeline c3bab1cea1e2f9e013fbb5ae8d7c4c5a https://www.encodeproject.org/files/ENCFF749WCS/@@download/ENCFF749WCS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF845HKH bam unfiltered alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF118FEW, ENCFF249RWY, ENCFF482JNU 1113352901 ENCODE Processing Pipeline f731764f06b16cc63c7227cfa0c6860e https://www.encodeproject.org/files/ENCFF845HKH/@@download/ENCFF845HKH.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF397HOQ bam alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF118FEW, ENCFF249RWY, ENCFF482JNU 583914160 ENCODE Processing Pipeline b4fd4c9e7085a29639c072e7e9b5c9c2 https://www.encodeproject.org/files/ENCFF397HOQ/@@download/ENCFF397HOQ.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF002BYB fastq reads ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1190201877 Bing Ren, UCSD d57e02bbfab28f080f96230f77b3152e SRA:SRR3651170 https://www.encodeproject.org/files/ENCFF002BYB/@@download/ENCFF002BYB.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF002BYC fastq reads ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1299481860 Bing Ren, UCSD 98f2c7e08c585ff66f8b11c30998b232 SRA:SRR3651171 https://www.encodeproject.org/files/ENCFF002BYC/@@download/ENCFF002BYC.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF531TMH bam unfiltered alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BYC, ENCFF806TVZ 1696244215 ENCODE Processing Pipeline af2dbc1d1456e47cfe209415f2994ae1 https://www.encodeproject.org/files/ENCFF531TMH/@@download/ENCFF531TMH.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF450KHI bam unfiltered alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BYB, ENCFF806TVZ 1558193148 ENCODE Processing Pipeline cc855d03f8f417dec185eb20d07b9b55 https://www.encodeproject.org/files/ENCFF450KHI/@@download/ENCFF450KHI.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF141POR bam alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BYC, ENCFF806TVZ 1093667148 ENCODE Processing Pipeline ec2b4d91b9c4a04bbade503ce88b6357 https://www.encodeproject.org/files/ENCFF141POR/@@download/ENCFF141POR.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF783YRC bam alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BYB, ENCFF806TVZ 1003940371 ENCODE Processing Pipeline 1588c74c7e2692c4c84898ef428475b0 https://www.encodeproject.org/files/ENCFF783YRC/@@download/ENCFF783YRC.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF877RBE bam unfiltered alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BYB, ENCFF018NEO 1560603679 ENCODE Processing Pipeline 738a106bddd051d44f31c2afb08bfcfb https://www.encodeproject.org/files/ENCFF877RBE/@@download/ENCFF877RBE.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF898UGK bam unfiltered alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BYC, ENCFF018NEO 1698777330 ENCODE Processing Pipeline 494c254d69deb851f88a1add4df1222d https://www.encodeproject.org/files/ENCFF898UGK/@@download/ENCFF898UGK.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF658UBJ bam alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BYB, ENCFF018NEO 1003572125 ENCODE Processing Pipeline 03fb3c3cf468ad177f23c30747aa98cd https://www.encodeproject.org/files/ENCFF658UBJ/@@download/ENCFF658UBJ.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF025IEP bam alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BYC, ENCFF018NEO 1093315387 ENCODE Processing Pipeline 6b82655bdf36876ba0727bda182905af https://www.encodeproject.org/files/ENCFF025IEP/@@download/ENCFF025IEP.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF804SIM fastq reads ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1034774729 Bing Ren, UCSD 74d13b27ada526427d01111bc983c701 SRA:SRR3651716 https://www.encodeproject.org/files/ENCFF804SIM/@@download/ENCFF804SIM.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF153AQK fastq reads ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2102385907 Bing Ren, UCSD 980c1590a9778b7fd2c59fff7ff13bc3 SRA:SRR3651714 https://www.encodeproject.org/files/ENCFF153AQK/@@download/ENCFF153AQK.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF881XHD fastq reads ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2550609614 Bing Ren, UCSD 0c5c3b7975eef12c3206fd78605d478c SRA:SRR3651717 https://www.encodeproject.org/files/ENCFF881XHD/@@download/ENCFF881XHD.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF723ZWB fastq reads ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1094970836 Bing Ren, UCSD 6f8148a3c4697c863a852a4ab227a35d SRA:SRR3651715 https://www.encodeproject.org/files/ENCFF723ZWB/@@download/ENCFF723ZWB.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF212NBY bam alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF804SIM, ENCFF806TVZ, ENCFF881XHD 3164097406 ENCODE Processing Pipeline 45a868185dc29b855760422afa9eceeb https://www.encodeproject.org/files/ENCFF212NBY/@@download/ENCFF212NBY.bam mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF874JVU bam alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF153AQK, ENCFF723ZWB, ENCFF806TVZ 2884336374 ENCODE Processing Pipeline 72e04e2b64e31dbb80adfaf5ddc29824 https://www.encodeproject.org/files/ENCFF874JVU/@@download/ENCFF874JVU.bam mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF855IEI bed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF314ZXJ, ENCFF874JVU 1136274 ENCODE Processing Pipeline f08b969c948f30eb258dc1ae5570f2e0 https://www.encodeproject.org/files/ENCFF855IEI/@@download/ENCFF855IEI.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF804WXS bigBed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF855IEI 2571769 ENCODE Processing Pipeline 0dba7ecc4f6099a2b120ed1dec9a1f17 https://www.encodeproject.org/files/ENCFF804WXS/@@download/ENCFF804WXS.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF370DDZ bigBed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF396SYH 2276127 ENCODE Processing Pipeline 09ee4867f2e07f82e3631f429cc03d54 https://www.encodeproject.org/files/ENCFF370DDZ/@@download/ENCFF370DDZ.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF572NHL bed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF212NBY, ENCFF314ZXJ 868883 ENCODE Processing Pipeline 2ee17838cbadb2121108c4a2df524fc2 https://www.encodeproject.org/files/ENCFF572NHL/@@download/ENCFF572NHL.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF396SYH bed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF212NBY, ENCFF314ZXJ, ENCFF874JVU 836722 ENCODE Processing Pipeline 00ac240b68a73ac78e4c871d17106876 https://www.encodeproject.org/files/ENCFF396SYH/@@download/ENCFF396SYH.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF695PJU bigBed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF572NHL 2014279 ENCODE Processing Pipeline a895a0da3ffa58e89da38df5343cde9f https://www.encodeproject.org/files/ENCFF695PJU/@@download/ENCFF695PJU.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF770GAN bigWig signal p-value ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF314ZXJ, ENCFF874JVU 908651938 ENCODE Processing Pipeline 0c849bbe8362cc6282a78bab41ad3339 https://www.encodeproject.org/files/ENCFF770GAN/@@download/ENCFF770GAN.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF718XKF bigWig signal p-value ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF212NBY, ENCFF314ZXJ 1089270680 ENCODE Processing Pipeline 04df7399de49b8ed4565178f4caa9e62 https://www.encodeproject.org/files/ENCFF718XKF/@@download/ENCFF718XKF.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF894EYE bigWig signal p-value ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF212NBY, ENCFF314ZXJ, ENCFF874JVU 1354397262 ENCODE Processing Pipeline 6f35c7f83a15d2fccb91506e8d977de9 https://www.encodeproject.org/files/ENCFF894EYE/@@download/ENCFF894EYE.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF512CAJ bigWig fold change over control ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF314ZXJ, ENCFF874JVU 1163525691 ENCODE Processing Pipeline bfd85eb113787936b4c24bc59ba6aab1 https://www.encodeproject.org/files/ENCFF512CAJ/@@download/ENCFF512CAJ.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF416TMS bigWig fold change over control ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF212NBY, ENCFF314ZXJ 1200695307 ENCODE Processing Pipeline ae360df55c0528adca41ff5074fdf424 https://www.encodeproject.org/files/ENCFF416TMS/@@download/ENCFF416TMS.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF014JIH bigWig fold change over control ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF212NBY, ENCFF314ZXJ, ENCFF874JVU 1690412590 ENCODE Processing Pipeline b1e91747ae22e399b62febbac7e68767 https://www.encodeproject.org/files/ENCFF014JIH/@@download/ENCFF014JIH.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF033UIU bigBed narrowPeak replicated peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF435HIM 1390146 ENCODE Processing Pipeline 758a9d42a4bbb666c2516c1c5590f86c https://www.encodeproject.org/files/ENCFF033UIU/@@download/ENCFF033UIU.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF435HIM bed narrowPeak replicated peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF396SYH, ENCFF572NHL, ENCFF855IEI 627124 ENCODE Processing Pipeline c93ceb1f989abc9b130bf2e50f5add94 https://www.encodeproject.org/files/ENCFF435HIM/@@download/ENCFF435HIM.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF505RBA bam unfiltered alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF804SIM, ENCFF881XHD 4309659589 ENCODE Processing Pipeline 755d2452b4b9145fbbbd4859b1d1f153 https://www.encodeproject.org/files/ENCFF505RBA/@@download/ENCFF505RBA.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF658PCQ bam unfiltered alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF153AQK, ENCFF723ZWB 3861043668 ENCODE Processing Pipeline e2be0fa9e560f15364627251b8479e19 https://www.encodeproject.org/files/ENCFF658PCQ/@@download/ENCFF658PCQ.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF187EVU bam alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF804SIM, ENCFF881XHD 3163595305 ENCODE Processing Pipeline 75a105dd30b5ddf8bbf41e13785b2932 https://www.encodeproject.org/files/ENCFF187EVU/@@download/ENCFF187EVU.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF642MWW bam alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF153AQK, ENCFF723ZWB 2883845368 ENCODE Processing Pipeline 7c0015015a5573f90b46cf6d986b8141 https://www.encodeproject.org/files/ENCFF642MWW/@@download/ENCFF642MWW.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF884WVF bed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF615JIE, ENCFF642MWW 1005216 ENCODE Processing Pipeline 83c2c653d5bd3d0a7eba21c6e35c2d95 https://www.encodeproject.org/files/ENCFF884WVF/@@download/ENCFF884WVF.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF005SNF bed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF187EVU 467205 ENCODE Processing Pipeline 94ae40d7b47d87462295d6559f4def86 https://www.encodeproject.org/files/ENCFF005SNF/@@download/ENCFF005SNF.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF251OXZ bed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF187EVU, ENCFF615JIE, ENCFF642MWW 1088309 ENCODE Processing Pipeline 2a9f2965c5949a000034b96351a02c4d https://www.encodeproject.org/files/ENCFF251OXZ/@@download/ENCFF251OXZ.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF835OAP bigBed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF884WVF 2275241 ENCODE Processing Pipeline 0bde9ca3c22fa2e0b92e9e3d4040dd8b https://www.encodeproject.org/files/ENCFF835OAP/@@download/ENCFF835OAP.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF723PFB bigBed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF005SNF 1348844 ENCODE Processing Pipeline 89e60d5e47575a50f6304ea1b0d0f486 https://www.encodeproject.org/files/ENCFF723PFB/@@download/ENCFF723PFB.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF345TRX bigBed narrowPeak peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF251OXZ 2972711 ENCODE Processing Pipeline baf61ac2a163c20178a5f7653c36b140 https://www.encodeproject.org/files/ENCFF345TRX/@@download/ENCFF345TRX.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF605UBS bigWig signal p-value ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF615JIE, ENCFF642MWW 1095988760 ENCODE Processing Pipeline 71c5185ebb9b8ad938705bd9c3107c34 https://www.encodeproject.org/files/ENCFF605UBS/@@download/ENCFF605UBS.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF605MXZ bigWig signal p-value ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF187EVU 856934768 ENCODE Processing Pipeline c01bedef8b1d629fb4754ba63ef87264 https://www.encodeproject.org/files/ENCFF605MXZ/@@download/ENCFF605MXZ.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF045GIX bigWig signal p-value ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF187EVU, ENCFF615JIE, ENCFF642MWW 1577785957 ENCODE Processing Pipeline 59d0c5e77c2b85855c726664542a08cc https://www.encodeproject.org/files/ENCFF045GIX/@@download/ENCFF045GIX.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF233MEU bigWig fold change over control ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF615JIE, ENCFF642MWW 1245916359 ENCODE Processing Pipeline f9c8fd1cbc34f47cca63b514e8a5921e https://www.encodeproject.org/files/ENCFF233MEU/@@download/ENCFF233MEU.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF464PSI bigWig fold change over control ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF187EVU 1018094156 ENCODE Processing Pipeline 955b3190cc0c42412d16c8df53179bd0 https://www.encodeproject.org/files/ENCFF464PSI/@@download/ENCFF464PSI.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF086VKO bed narrowPeak replicated peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF005SNF, ENCFF251OXZ, ENCFF884WVF 561482 ENCODE Processing Pipeline fadd88771278d659216fccbeec8378d0 https://www.encodeproject.org/files/ENCFF086VKO/@@download/ENCFF086VKO.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF408PKX bigWig fold change over control ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF187EVU, ENCFF615JIE, ENCFF642MWW 1760919420 ENCODE Processing Pipeline 3213de3598f98dde997c7989c1e8a744 https://www.encodeproject.org/files/ENCFF408PKX/@@download/ENCFF408PKX.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF603EVL bigBed narrowPeak replicated peaks ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF086VKO 1234832 ENCODE Processing Pipeline a7b756ec8921cc56a4a0103a5cd0e2c0 https://www.encodeproject.org/files/ENCFF603EVL/@@download/ENCFF603EVL.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF001MXQ bam alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001MXS 365133603 Michael Snyder, Stanford 572301a9d7603a81c7703007564b23e1 https://www.encodeproject.org/files/ENCFF001MXQ/@@download/ENCFF001MXQ.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001MXR bigBed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHD 1108207 Michael Snyder, Stanford 87b1c05f7db96e42a85cd961aaac6085 https://www.encodeproject.org/files/ENCFF001MXR/@@download/ENCFF001MXR.bigBed mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001MXS fastq reads ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 672157257 Michael Snyder, Stanford d2d5ddb1cdbe7ef4ada274df58197241 https://www.encodeproject.org/files/ENCFF001MXS/@@download/ENCFF001MXS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NNN/ released low read length, low read depth biological replicates with identical biosample ENCFF001MXU fastq reads ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1079539406 Michael Snyder, Stanford 2e06a5ecdaacb1cd5c9d4244241c1448 https://www.encodeproject.org/files/ENCFF001MXU/@@download/ENCFF001MXU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NNP/ released low read length, low read depth biological replicates with identical biosample ENCFF001MXW bigWig signal ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MXQ, ENCFF001MXX 203859169 Michael Snyder, Stanford a0327d72ee47a5fc5c05698196d66072 https://www.encodeproject.org/files/ENCFF001MXW/@@download/ENCFF001MXW.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001MXX bam alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001MXU 536884003 Michael Snyder, Stanford 2f4d9fca94989fccc312de2c02f47dcc https://www.encodeproject.org/files/ENCFF001MXX/@@download/ENCFF001MXX.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001YHD bed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MXQ, ENCFF001MXX 483258 Michael Snyder, Stanford 37a62dba6fba1f73cebab18d8dc34127 https://www.encodeproject.org/files/ENCFF001YHD/@@download/ENCFF001YHD.bed.gz mm9 released low read length, low read depth biological replicates with identical biosample ENCFF292RHL bam unfiltered alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MXU, ENCFF018NEO 1143239426 ENCODE Processing Pipeline 6deb217ad17f01bb1e4741daaaacbf6e https://www.encodeproject.org/files/ENCFF292RHL/@@download/ENCFF292RHL.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF723RUT bam unfiltered alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MXS, ENCFF018NEO 738024722 ENCODE Processing Pipeline 31e1a6b7c33b862d5d250990b073060c https://www.encodeproject.org/files/ENCFF723RUT/@@download/ENCFF723RUT.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF031HWN bam alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MXS, ENCFF018NEO 514624434 ENCODE Processing Pipeline fde081423bccf0ef19e82f17444e1570 https://www.encodeproject.org/files/ENCFF031HWN/@@download/ENCFF031HWN.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF380NUU bam alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MXU, ENCFF018NEO 771498659 ENCODE Processing Pipeline 6a92078ebddf77012e71144cdb7b4051 https://www.encodeproject.org/files/ENCFF380NUU/@@download/ENCFF380NUU.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF790YDK bed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF031HWN, ENCFF074LDJ, ENCFF966YUS 1201613 ENCODE Processing Pipeline b09bf13d603a0784b7dd9a597fd15506 https://www.encodeproject.org/files/ENCFF790YDK/@@download/ENCFF790YDK.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF244SBF bed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF031HWN, ENCFF074LDJ, ENCFF380NUU, ENCFF966YUS 1142782 ENCODE Processing Pipeline 7e36127cac871c19f2af266cff06bcdc https://www.encodeproject.org/files/ENCFF244SBF/@@download/ENCFF244SBF.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF692UFZ bigWig signal p-value ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF031HWN, ENCFF074LDJ, ENCFF966YUS 422768137 ENCODE Processing Pipeline 3894c67595121506ba7a319e3e382bdc https://www.encodeproject.org/files/ENCFF692UFZ/@@download/ENCFF692UFZ.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF344MRO bigWig signal p-value ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF074LDJ, ENCFF380NUU, ENCFF966YUS 406085347 ENCODE Processing Pipeline 831fb23c7025fa8fe7bb8c7eb8d4f6af https://www.encodeproject.org/files/ENCFF344MRO/@@download/ENCFF344MRO.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF421OLR bigWig fold change over control ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF031HWN, ENCFF074LDJ, ENCFF966YUS 305171995 ENCODE Processing Pipeline c4fdbc8d0a69ce8c954cb4bd4676d765 https://www.encodeproject.org/files/ENCFF421OLR/@@download/ENCFF421OLR.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF034JJA bigWig fold change over control ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF074LDJ, ENCFF380NUU, ENCFF966YUS 402032419 ENCODE Processing Pipeline c6e1f31f52bf3de2506abf0b3fa6f63b https://www.encodeproject.org/files/ENCFF034JJA/@@download/ENCFF034JJA.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF012AZO bed narrowPeak replicated peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF244SBF, ENCFF790YDK, ENCFF857TGT 1220338 ENCODE Processing Pipeline 2c2da5c2d2b6f8c972a3c73c791cbffb https://www.encodeproject.org/files/ENCFF012AZO/@@download/ENCFF012AZO.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF785WXZ bigBed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF857TGT 3361197 ENCODE Processing Pipeline db414003963103db52908611f8d16d87 https://www.encodeproject.org/files/ENCFF785WXZ/@@download/ENCFF785WXZ.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF810CYG bigBed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF244SBF 3386736 ENCODE Processing Pipeline 36b8034b3086f0f91094aae11530c4fc https://www.encodeproject.org/files/ENCFF810CYG/@@download/ENCFF810CYG.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF523UIR bigWig signal p-value ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF031HWN, ENCFF074LDJ, ENCFF380NUU, ENCFF966YUS 578370528 ENCODE Processing Pipeline a1ec0142b057f50bbcf24150f80c663b https://www.encodeproject.org/files/ENCFF523UIR/@@download/ENCFF523UIR.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF240MDV bigWig fold change over control ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF031HWN, ENCFF074LDJ, ENCFF380NUU, ENCFF966YUS 570843707 ENCODE Processing Pipeline 4bb435fed72cc72bcd54a04b5fec9874 https://www.encodeproject.org/files/ENCFF240MDV/@@download/ENCFF240MDV.bigWig mm10 released low read length, low read depth biological replicates with identical biosample ENCFF055TTW bigBed narrowPeak replicated peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF012AZO 2695639 ENCODE Processing Pipeline 846b93b133d7604f7350f9e74d678b1e https://www.encodeproject.org/files/ENCFF055TTW/@@download/ENCFF055TTW.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF857TGT bed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF074LDJ, ENCFF380NUU, ENCFF966YUS 1121726 ENCODE Processing Pipeline 4f2181cb4c8081ffc0df048621e3d67f https://www.encodeproject.org/files/ENCFF857TGT/@@download/ENCFF857TGT.bed.gz mm10 released low read length, low read depth biological replicates with identical biosample ENCFF905DPD bigBed narrowPeak peaks ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF790YDK 3629215 ENCODE Processing Pipeline 99cd3d669ffd9858b63185376d2ff7a5 https://www.encodeproject.org/files/ENCFF905DPD/@@download/ENCFF905DPD.bigBed mm10 released low read length, low read depth biological replicates with identical biosample ENCFF926URZ fastq reads ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1323381347 Bing Ren, UCSD fa66df5bcb8d4b6d4d6619f1e95bd963 SRA:SRR3652759 https://www.encodeproject.org/files/ENCFF926URZ/@@download/ENCFF926URZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF919IQP fastq reads ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 974416975 Bing Ren, UCSD ba7011022a55130a55e8168d9f15c589 SRA:SRR3652760 https://www.encodeproject.org/files/ENCFF919IQP/@@download/ENCFF919IQP.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF593LFI fastq reads ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 2 36 single-ended 763920053 Bing Ren, UCSD 9eac90878d2291d6e1c3a09d39dc6a57 SRA:SRR3652761 https://www.encodeproject.org/files/ENCFF593LFI/@@download/ENCFF593LFI.fastq.gz Illumina HiSeq 2500 /files/ENCFF249RWY/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF532WDX bam alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF806TVZ, ENCFF926URZ 1271566794 ENCODE Processing Pipeline 69f70789db32b9f2145097d861554f0d https://www.encodeproject.org/files/ENCFF532WDX/@@download/ENCFF532WDX.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF402XEN bam alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF593LFI, ENCFF806TVZ, ENCFF919IQP 1469342209 ENCODE Processing Pipeline f32331ec314fc516b48aa2f851735b45 https://www.encodeproject.org/files/ENCFF402XEN/@@download/ENCFF402XEN.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF550NLY bed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF532WDX, ENCFF578PIN 2981192 ENCODE Processing Pipeline 17672d182dc24cce6daab948cc45a8f3 https://www.encodeproject.org/files/ENCFF550NLY/@@download/ENCFF550NLY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF211KII bed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF402XEN, ENCFF439PVF, ENCFF578PIN 2035541 ENCODE Processing Pipeline 8a679e41cef0ae7c63f3e8893d0d5d19 https://www.encodeproject.org/files/ENCFF211KII/@@download/ENCFF211KII.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF008IUA bigBed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF782EYS 5391573 ENCODE Processing Pipeline 6d8a90f6006ca4a148de4e9e9d5a3106 https://www.encodeproject.org/files/ENCFF008IUA/@@download/ENCFF008IUA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF426ZKL bigBed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF550NLY 8284084 ENCODE Processing Pipeline 562d7cedfb6056ed855c46c1dc7eb6bc https://www.encodeproject.org/files/ENCFF426ZKL/@@download/ENCFF426ZKL.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF782EYS bed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF402XEN, ENCFF439PVF, ENCFF532WDX, ENCFF578PIN 1866324 ENCODE Processing Pipeline 8ae57528edfafbe9682f7c8b4217d094 https://www.encodeproject.org/files/ENCFF782EYS/@@download/ENCFF782EYS.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF549HFH bigBed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF211KII 4698084 ENCODE Processing Pipeline a94f22731154ddcb37b36b029cd6f808 https://www.encodeproject.org/files/ENCFF549HFH/@@download/ENCFF549HFH.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133UZI bigWig signal p-value ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF532WDX, ENCFF578PIN 561899322 ENCODE Processing Pipeline 9b5d0c31c57bda8ca9f3bebfb237fcea https://www.encodeproject.org/files/ENCFF133UZI/@@download/ENCFF133UZI.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF225KAB bigWig signal p-value ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF402XEN, ENCFF439PVF, ENCFF578PIN 610581253 ENCODE Processing Pipeline 12ae89d73493c9ef5631487f1e5d97d2 https://www.encodeproject.org/files/ENCFF225KAB/@@download/ENCFF225KAB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF099FYL bigWig signal p-value ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF402XEN, ENCFF439PVF, ENCFF532WDX, ENCFF578PIN 596139506 ENCODE Processing Pipeline 0da9ce67043ec955ab100127acf9d5f7 https://www.encodeproject.org/files/ENCFF099FYL/@@download/ENCFF099FYL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF338IPH bigWig fold change over control ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF532WDX, ENCFF578PIN 551288977 ENCODE Processing Pipeline 9f68f8b7db8e6bfa009823f0da22d5d8 https://www.encodeproject.org/files/ENCFF338IPH/@@download/ENCFF338IPH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF850IFQ bigWig fold change over control ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF402XEN, ENCFF439PVF, ENCFF578PIN 605505836 ENCODE Processing Pipeline 4f919544373226928de70fb89f3a25ef https://www.encodeproject.org/files/ENCFF850IFQ/@@download/ENCFF850IFQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF112RVX bigWig fold change over control ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF402XEN, ENCFF439PVF, ENCFF532WDX, ENCFF578PIN 930064264 ENCODE Processing Pipeline 5aaa061e56a9596f5fb28f7ce91cc190 https://www.encodeproject.org/files/ENCFF112RVX/@@download/ENCFF112RVX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF710NRK bed narrowPeak replicated peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF211KII, ENCFF550NLY, ENCFF782EYS 1948487 ENCODE Processing Pipeline 48af10e8404ad88dc6ad956b122c282d https://www.encodeproject.org/files/ENCFF710NRK/@@download/ENCFF710NRK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF425ZMA bigBed narrowPeak replicated peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF710NRK 4470391 ENCODE Processing Pipeline aa1748f97447d7929612547bc634cad2 https://www.encodeproject.org/files/ENCFF425ZMA/@@download/ENCFF425ZMA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF863JVM bam unfiltered alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF926URZ 1726829366 ENCODE Processing Pipeline fc212b2f6a2e3331234e36d26be544af https://www.encodeproject.org/files/ENCFF863JVM/@@download/ENCFF863JVM.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF015PFZ bam alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF926URZ 1271322581 ENCODE Processing Pipeline 79181a4f7b6f3d5535fff072a0387b9b https://www.encodeproject.org/files/ENCFF015PFZ/@@download/ENCFF015PFZ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF454TDL bam unfiltered alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF593LFI, ENCFF919IQP 1960572802 ENCODE Processing Pipeline 3d240b05e80abe6ae2d9206cdb4d47e3 https://www.encodeproject.org/files/ENCFF454TDL/@@download/ENCFF454TDL.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF671TRH bam alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF593LFI, ENCFF919IQP 1257804024 ENCODE Processing Pipeline b8b9b126ed7d015e8d9fb8d2caf6fb92 https://www.encodeproject.org/files/ENCFF671TRH/@@download/ENCFF671TRH.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF877ZBQ bed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF015PFZ, ENCFF397HOQ, ENCFF749WCS 2943788 ENCODE Processing Pipeline daaafe7925b030d8a3ac0c51f700cda8 https://www.encodeproject.org/files/ENCFF877ZBQ/@@download/ENCFF877ZBQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF664NZC bed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF671TRH, ENCFF749WCS 2001420 ENCODE Processing Pipeline 29c591e5c46949e8ab4df869d3fc64e0 https://www.encodeproject.org/files/ENCFF664NZC/@@download/ENCFF664NZC.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF436ACU bed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF015PFZ, ENCFF397HOQ, ENCFF671TRH, ENCFF749WCS 1870801 ENCODE Processing Pipeline 56854725ad69150a5c4192e81b23f4b5 https://www.encodeproject.org/files/ENCFF436ACU/@@download/ENCFF436ACU.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF138MEA bigWig signal p-value ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF015PFZ, ENCFF397HOQ, ENCFF671TRH, ENCFF749WCS 584654181 ENCODE Processing Pipeline 2a314d9a57f593867bf8dbac6970cda2 https://www.encodeproject.org/files/ENCFF138MEA/@@download/ENCFF138MEA.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF856LUG bigWig fold change over control ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF671TRH, ENCFF749WCS 597276559 ENCODE Processing Pipeline 4d7b003139498ab13258730db64f0ca6 https://www.encodeproject.org/files/ENCFF856LUG/@@download/ENCFF856LUG.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF524HFA bigBed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF877ZBQ 8195388 ENCODE Processing Pipeline 7d1918ebb21c9e5e9c8c7e4a595a5ea6 https://www.encodeproject.org/files/ENCFF524HFA/@@download/ENCFF524HFA.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF907RJA bigBed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF664NZC 4654379 ENCODE Processing Pipeline 1e40c6241ce454d9e0b469b3f540365a https://www.encodeproject.org/files/ENCFF907RJA/@@download/ENCFF907RJA.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF594CTH bigWig signal p-value ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF015PFZ, ENCFF397HOQ, ENCFF749WCS 562676445 ENCODE Processing Pipeline 7a098fb863ca9b7aefce3f1aa94576cf https://www.encodeproject.org/files/ENCFF594CTH/@@download/ENCFF594CTH.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF508PMP bigWig signal p-value ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF671TRH, ENCFF749WCS 603321330 ENCODE Processing Pipeline b663b3397ea0f77b60be6ae2cc57e1e1 https://www.encodeproject.org/files/ENCFF508PMP/@@download/ENCFF508PMP.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF820KYB bigWig fold change over control ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF015PFZ, ENCFF397HOQ, ENCFF749WCS 547870119 ENCODE Processing Pipeline 6996aa120430d0bb472632320e6f965f https://www.encodeproject.org/files/ENCFF820KYB/@@download/ENCFF820KYB.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF050XMU bigBed narrowPeak peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF436ACU 5390930 ENCODE Processing Pipeline 1b858504daf1bc9d99451dffaa66d7fc https://www.encodeproject.org/files/ENCFF050XMU/@@download/ENCFF050XMU.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF342RVM bed narrowPeak replicated peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF436ACU, ENCFF664NZC, ENCFF877ZBQ 1931822 ENCODE Processing Pipeline d38ac380534ebace69ce7cc11b8c856f https://www.encodeproject.org/files/ENCFF342RVM/@@download/ENCFF342RVM.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF827KON bigBed narrowPeak replicated peaks ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF342RVM 4445309 ENCODE Processing Pipeline 9a1a1524d1f6fb06f406738229631880 https://www.encodeproject.org/files/ENCFF827KON/@@download/ENCFF827KON.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF298SER bigWig fold change over control ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF015PFZ, ENCFF397HOQ, ENCFF671TRH, ENCFF749WCS 914242060 ENCODE Processing Pipeline a3d4383fd20a6a2a787ff412298505db https://www.encodeproject.org/files/ENCFF298SER/@@download/ENCFF298SER.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001NAE bigBed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHL 143121 Michael Snyder, Stanford c5c1334bdfbd53a75db7932c71697d11 https://www.encodeproject.org/files/ENCFF001NAE/@@download/ENCFF001NAE.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NAF fastq reads ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1252529142 Michael Snyder, Stanford 2af373746ccb75dec533b88ccc4977fc https://www.encodeproject.org/files/ENCFF001NAF/@@download/ENCFF001NAF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTS/ released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NAH fastq reads ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 926726126 Michael Snyder, Stanford a43fcdd3c2c1dc65b1f5512a5221e410 https://www.encodeproject.org/files/ENCFF001NAH/@@download/ENCFF001NAH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTU/ released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NAJ bigWig signal ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NAK, ENCFF001NAL 227790550 Michael Snyder, Stanford 2f59e86a48a214c592f4df05ba9a8ddd https://www.encodeproject.org/files/ENCFF001NAJ/@@download/ENCFF001NAJ.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NAK bam alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001NAH 433230628 Michael Snyder, Stanford 8b675176e538eb76284ca8f7de4ddc5a https://www.encodeproject.org/files/ENCFF001NAK/@@download/ENCFF001NAK.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NAL bam alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001NAF 597661853 Michael Snyder, Stanford da1e89cdf570bc78e9ad3f71749f0a75 https://www.encodeproject.org/files/ENCFF001NAL/@@download/ENCFF001NAL.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001YHL bed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NAK, ENCFF001NAL 31141 Michael Snyder, Stanford 6b0e543208512118ab13ec22fa5ce91c https://www.encodeproject.org/files/ENCFF001YHL/@@download/ENCFF001YHL.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF772VZO bam unfiltered alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAH, ENCFF018NEO 990403159 ENCODE Processing Pipeline 6e9925e216291f515ddbf0d6d44b6a10 https://www.encodeproject.org/files/ENCFF772VZO/@@download/ENCFF772VZO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF879SPK bam unfiltered alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAF, ENCFF018NEO 1389692292 ENCODE Processing Pipeline 085d1f2318baa27c8a50f34fdb97253c https://www.encodeproject.org/files/ENCFF879SPK/@@download/ENCFF879SPK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF842YIK bam alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAH, ENCFF018NEO 524260492 ENCODE Processing Pipeline 279ea6a7f7efc4b2e1db1df45f413bb6 https://www.encodeproject.org/files/ENCFF842YIK/@@download/ENCFF842YIK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF578AAB bam alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAF, ENCFF018NEO 856190337 ENCODE Processing Pipeline 7f037f1e427b86a5f41ca14cf68c0d66 https://www.encodeproject.org/files/ENCFF578AAB/@@download/ENCFF578AAB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF655PLL bigBed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF455YIC 836314 ENCODE Processing Pipeline 6e930438f69f36617ffaa154ef9129ef https://www.encodeproject.org/files/ENCFF655PLL/@@download/ENCFF655PLL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF641AUR bigBed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF320YIK 596043 ENCODE Processing Pipeline d4764654b3f1df2491a465e5e3c1e7c7 https://www.encodeproject.org/files/ENCFF641AUR/@@download/ENCFF641AUR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF245NHS bigBed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF399LGV 238004 ENCODE Processing Pipeline 8343cbd4b95b1decf65ac4e336267b2f https://www.encodeproject.org/files/ENCFF245NHS/@@download/ENCFF245NHS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF455YIC bed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF842YIK 507066 ENCODE Processing Pipeline f32b6b88f0f1de4c333797f6a610ca3c https://www.encodeproject.org/files/ENCFF455YIC/@@download/ENCFF455YIC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF399LGV bed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF578AAB, ENCFF842YIK 96087 ENCODE Processing Pipeline b2b542af094b3ffd96c2be804604b98b https://www.encodeproject.org/files/ENCFF399LGV/@@download/ENCFF399LGV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF320YIK bed narrowPeak peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF578AAB 322431 ENCODE Processing Pipeline ab596e7b26999b93cb20e6ba7913ec05 https://www.encodeproject.org/files/ENCFF320YIK/@@download/ENCFF320YIK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF290SXB bigWig signal p-value ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF578AAB 464003416 ENCODE Processing Pipeline ef1a6d56ff4de74ee96cc3f392981efa https://www.encodeproject.org/files/ENCFF290SXB/@@download/ENCFF290SXB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF550GBN bigWig signal p-value ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF842YIK 367676467 ENCODE Processing Pipeline efffc322ca7f0682997f7ebe32a2e2eb https://www.encodeproject.org/files/ENCFF550GBN/@@download/ENCFF550GBN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF079XPA bigWig signal p-value ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF578AAB, ENCFF842YIK 576701502 ENCODE Processing Pipeline 72f1804476b920b709742adee0c00c2e https://www.encodeproject.org/files/ENCFF079XPA/@@download/ENCFF079XPA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF226XRK bigWig fold change over control ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF578AAB 437979090 ENCODE Processing Pipeline 7ea9b2e49d3dff67d0814279273aa6f2 https://www.encodeproject.org/files/ENCFF226XRK/@@download/ENCFF226XRK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF570KCT bigWig fold change over control ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF842YIK 312608223 ENCODE Processing Pipeline 22d3161184367a6c2706616b731b9262 https://www.encodeproject.org/files/ENCFF570KCT/@@download/ENCFF570KCT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF393FAV bigWig fold change over control ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF578AAB, ENCFF842YIK 610064011 ENCODE Processing Pipeline bb246bd3b0fb5eeee095b2fde4b4ad33 https://www.encodeproject.org/files/ENCFF393FAV/@@download/ENCFF393FAV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF977AHO bed narrowPeak replicated peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF320YIK, ENCFF399LGV, ENCFF455YIC 17983 ENCODE Processing Pipeline c51bd29e9360be04078bedb471e833ee https://www.encodeproject.org/files/ENCFF977AHO/@@download/ENCFF977AHO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF060PNF bigBed narrowPeak replicated peaks ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF977AHO 104067 ENCODE Processing Pipeline 98bede75b8dd7b498a68cc5b05d2f722 https://www.encodeproject.org/files/ENCFF060PNF/@@download/ENCFF060PNF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NAU bigBed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHN 1598779 Michael Snyder, Stanford a2b5876ad17e8e8b77805f436c29bc75 https://www.encodeproject.org/files/ENCFF001NAU/@@download/ENCFF001NAU.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAV fastq reads ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 812080523 Michael Snyder, Stanford c84556258d8502bde2fc01be2b1bd091 SRA:SRR5210712 https://www.encodeproject.org/files/ENCFF001NAV/@@download/ENCFF001NAV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAX fastq reads ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 947714935 Michael Snyder, Stanford 94a7e91364d9109688ee135a15c4bded SRA:SRR5210713 https://www.encodeproject.org/files/ENCFF001NAX/@@download/ENCFF001NAX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NAZ bam alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 ENCFF001NAV 459841175 Michael Snyder, Stanford 03c21a99727d1650cdc162b3c8dc4374 https://www.encodeproject.org/files/ENCFF001NAZ/@@download/ENCFF001NAZ.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NBA bigWig signal ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NAZ, ENCFF001NBB 216924937 Michael Snyder, Stanford c3e32f83480c8f9018f81b20469d270e https://www.encodeproject.org/files/ENCFF001NBA/@@download/ENCFF001NBA.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001NBB bam alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 ENCFF001NAX 522159803 Michael Snyder, Stanford 4eb01ebf8b9cfdf9e5413f6e9ea6b002 https://www.encodeproject.org/files/ENCFF001NBB/@@download/ENCFF001NBB.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001YHN bed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NAZ, ENCFF001NBB 686467 Michael Snyder, Stanford 497115e6b24e62034017f05673e88e94 https://www.encodeproject.org/files/ENCFF001YHN/@@download/ENCFF001YHN.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF481JGL bam unfiltered alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAV, ENCFF018NEO 944516599 ENCODE Processing Pipeline 8dd4da33b8c5cf6cce364b49eeef7556 https://www.encodeproject.org/files/ENCFF481JGL/@@download/ENCFF481JGL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF911XUM bam unfiltered alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAX, ENCFF018NEO 1049917585 ENCODE Processing Pipeline 5e59f5d6dbca096dfe3e27e605e68bf2 https://www.encodeproject.org/files/ENCFF911XUM/@@download/ENCFF911XUM.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF561KUH bam alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAV, ENCFF018NEO 639856167 ENCODE Processing Pipeline d4f79848d28556a29dd40bd2dfb42494 https://www.encodeproject.org/files/ENCFF561KUH/@@download/ENCFF561KUH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF958CKD bam alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAX, ENCFF018NEO 678227551 ENCODE Processing Pipeline 746ee04b98a2215b0dd9b283d6e12b8a https://www.encodeproject.org/files/ENCFF958CKD/@@download/ENCFF958CKD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF158UEM bed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF958CKD 1521778 ENCODE Processing Pipeline 3b6bfa4888d050146abb4fc5fe1a27f2 https://www.encodeproject.org/files/ENCFF158UEM/@@download/ENCFF158UEM.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF526EJS bigBed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF244SFH 2218342 ENCODE Processing Pipeline bf2dc547238e9d235b9325f4baa0aea2 https://www.encodeproject.org/files/ENCFF526EJS/@@download/ENCFF526EJS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF081TTK bed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF171OVT, ENCFF561KUH, ENCFF958CKD 1011691 ENCODE Processing Pipeline 77a3f42b540034c5c2a521999c24329d https://www.encodeproject.org/files/ENCFF081TTK/@@download/ENCFF081TTK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF670FZL bigBed narrowPeak replicated peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF434OUL 1263058 ENCODE Processing Pipeline 1929b512a1cd3374af316e69745e7a59 https://www.encodeproject.org/files/ENCFF670FZL/@@download/ENCFF670FZL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF291IRD bigWig signal p-value ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF171OVT, ENCFF561KUH, ENCFF958CKD 299749171 ENCODE Processing Pipeline c31ba3ca8c97c6b92c8b42de83da8076 https://www.encodeproject.org/files/ENCFF291IRD/@@download/ENCFF291IRD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF434OUL bed narrowPeak replicated peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF081TTK, ENCFF158UEM, ENCFF244SFH 646535 ENCODE Processing Pipeline f66aae59c1b2f9fd839785d4e2c69ebd https://www.encodeproject.org/files/ENCFF434OUL/@@download/ENCFF434OUL.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF461BHT bigBed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF158UEM 3134012 ENCODE Processing Pipeline 0a58c452f85536619a08aef1a4d53809 https://www.encodeproject.org/files/ENCFF461BHT/@@download/ENCFF461BHT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF516TWM bigWig signal p-value ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF561KUH 282397469 ENCODE Processing Pipeline 7dcc0e56e7e338da84c594bbd7f2931a https://www.encodeproject.org/files/ENCFF516TWM/@@download/ENCFF516TWM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF244SFH bed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF561KUH 1023848 ENCODE Processing Pipeline cd0e73aa427dba4cd309917a4fb7dbbc https://www.encodeproject.org/files/ENCFF244SFH/@@download/ENCFF244SFH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF583ELJ bigBed narrowPeak peaks ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF081TTK 2042831 ENCODE Processing Pipeline 7e6a0141011651ec188faec42c19a428 https://www.encodeproject.org/files/ENCFF583ELJ/@@download/ENCFF583ELJ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF409ARU bigWig fold change over control ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF171OVT, ENCFF561KUH, ENCFF958CKD 495991639 ENCODE Processing Pipeline c5fc63f49586ce3b61bfa90dec63822a https://www.encodeproject.org/files/ENCFF409ARU/@@download/ENCFF409ARU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF515VIW bigWig signal p-value ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF958CKD 299477122 ENCODE Processing Pipeline 71a3c91b849f732f42bbfae8e9a65efa https://www.encodeproject.org/files/ENCFF515VIW/@@download/ENCFF515VIW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF979VHL bigWig fold change over control ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF171OVT, ENCFF561KUH 278917316 ENCODE Processing Pipeline 495f9a299e7a7daf20a5d7a9d68ac923 https://www.encodeproject.org/files/ENCFF979VHL/@@download/ENCFF979VHL.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF107DYE bigWig fold change over control ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF171OVT, ENCFF958CKD 298041099 ENCODE Processing Pipeline 4ce22d46c748af127c3249322ad98866 https://www.encodeproject.org/files/ENCFF107DYE/@@download/ENCFF107DYE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF002ESW fastq reads ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 507606008 Bing Ren, UCSD de0ccd46110d8e13aa0a29336619a560 SRA:SRR3652953 https://www.encodeproject.org/files/ENCFF002ESW/@@download/ENCFF002ESW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXQ/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002ETE fastq reads ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1208110576 Bing Ren, UCSD 7bfe5b1077ca2094a465e836c7dcde5a SRA:SRR3652954 https://www.encodeproject.org/files/ENCFF002ETE/@@download/ENCFF002ETE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF335WWJ bam alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETE, ENCFF806TVZ 981922349 ENCODE Processing Pipeline dc268019cb562c2932f88d499e358e5e https://www.encodeproject.org/files/ENCFF335WWJ/@@download/ENCFF335WWJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF944PSO bam alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESW, ENCFF806TVZ 471212896 ENCODE Processing Pipeline b83deddd2694ed1cfc172681a6cb35b0 https://www.encodeproject.org/files/ENCFF944PSO/@@download/ENCFF944PSO.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF066ATY bed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF335WWJ, ENCFF731DCA 1208599 ENCODE Processing Pipeline 467922b5bb18fac3664b32c5bfc9044a https://www.encodeproject.org/files/ENCFF066ATY/@@download/ENCFF066ATY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF337WAF bigBed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF066ATY 3725463 ENCODE Processing Pipeline 86d6f14b0be2d40e0c895d930e2c6013 https://www.encodeproject.org/files/ENCFF337WAF/@@download/ENCFF337WAF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF674BWP bigBed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF643GRR 3276534 ENCODE Processing Pipeline 0a80c7966c9d89b1eeb694724504c6a2 https://www.encodeproject.org/files/ENCFF674BWP/@@download/ENCFF674BWP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF300KVT bed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF335WWJ, ENCFF731DCA, ENCFF944PSO 1137764 ENCODE Processing Pipeline 817fc214bc13d450b21fd656a8d8f07a https://www.encodeproject.org/files/ENCFF300KVT/@@download/ENCFF300KVT.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF643GRR bed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF944PSO 1042023 ENCODE Processing Pipeline 73768a4940d565bbfbcf2c5a0c6b9f21 https://www.encodeproject.org/files/ENCFF643GRR/@@download/ENCFF643GRR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF897TLA bigBed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF300KVT 3502292 ENCODE Processing Pipeline e9017b1c4a8e188cdab5de13264d5537 https://www.encodeproject.org/files/ENCFF897TLA/@@download/ENCFF897TLA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF835CCE bigWig signal p-value ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF335WWJ, ENCFF731DCA 410453105 ENCODE Processing Pipeline 11723624f94369db0c091b20844690e0 https://www.encodeproject.org/files/ENCFF835CCE/@@download/ENCFF835CCE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF509OAE bigWig signal p-value ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF944PSO 222600428 ENCODE Processing Pipeline fa76254c61b98f4925bd357ce4d50fbb https://www.encodeproject.org/files/ENCFF509OAE/@@download/ENCFF509OAE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF682MHU bigWig fold change over control ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF335WWJ, ENCFF731DCA 400314376 ENCODE Processing Pipeline 98694cf3335db1017bb797e73fe9210b https://www.encodeproject.org/files/ENCFF682MHU/@@download/ENCFF682MHU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF179INZ bigWig fold change over control ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF335WWJ, ENCFF731DCA, ENCFF944PSO 522888620 ENCODE Processing Pipeline 6f6cfc852f0ea9293d9fa2ab206ced24 https://www.encodeproject.org/files/ENCFF179INZ/@@download/ENCFF179INZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF284GYP bigWig signal p-value ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF335WWJ, ENCFF731DCA, ENCFF944PSO 478853117 ENCODE Processing Pipeline a8805ca50a15feb59adf561805d5d7f1 https://www.encodeproject.org/files/ENCFF284GYP/@@download/ENCFF284GYP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF852ITO bigWig fold change over control ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF944PSO 177571161 ENCODE Processing Pipeline f4cd7f2bddfb84963e1d8fb05d055074 https://www.encodeproject.org/files/ENCFF852ITO/@@download/ENCFF852ITO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF283KGC bigBed narrowPeak replicated peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF026IMR 3100693 ENCODE Processing Pipeline 0dbd10f95ca14a01f42878bc1bf1f530 https://www.encodeproject.org/files/ENCFF283KGC/@@download/ENCFF283KGC.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF026IMR bed narrowPeak replicated peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF066ATY, ENCFF300KVT, ENCFF643GRR 1416390 ENCODE Processing Pipeline 25e26a0086f7beb8c95e5d7d1286429f https://www.encodeproject.org/files/ENCFF026IMR/@@download/ENCFF026IMR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF091LSV bam unfiltered alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETE, ENCFF018NEO 1421973664 ENCODE Processing Pipeline ac84882a6d3cebfd968b8fed21457303 https://www.encodeproject.org/files/ENCFF091LSV/@@download/ENCFF091LSV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF544TEY bam unfiltered alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESW, ENCFF018NEO 624496398 ENCODE Processing Pipeline cfe68ea6c8fd514d8fd6d9ffeac0dffe https://www.encodeproject.org/files/ENCFF544TEY/@@download/ENCFF544TEY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF781XPO bam alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESW, ENCFF018NEO 471168754 ENCODE Processing Pipeline 5b77ef444e3bfbd8935ae2756740ed38 https://www.encodeproject.org/files/ENCFF781XPO/@@download/ENCFF781XPO.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF775GOU bam alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETE, ENCFF018NEO 981840575 ENCODE Processing Pipeline fa4083c62ef835f15d387b1be0222edb https://www.encodeproject.org/files/ENCFF775GOU/@@download/ENCFF775GOU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF664SRQ bed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF775GOU 1250014 ENCODE Processing Pipeline 07af59dfe25170edd484c964b6e1e71a https://www.encodeproject.org/files/ENCFF664SRQ/@@download/ENCFF664SRQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF567YPK bed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF781XPO 1042351 ENCODE Processing Pipeline 1cb246d6d5b5a26f259a84fa05bc4414 https://www.encodeproject.org/files/ENCFF567YPK/@@download/ENCFF567YPK.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF838AKR bed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF276TCT, ENCFF461JUO, ENCFF775GOU, ENCFF781XPO 1138940 ENCODE Processing Pipeline 28951ceb3b480f34c80c865741483034 https://www.encodeproject.org/files/ENCFF838AKR/@@download/ENCFF838AKR.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF778CBK bigBed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF664SRQ 3838800 ENCODE Processing Pipeline cc1172f29326b4185b02b37d8acbc4aa https://www.encodeproject.org/files/ENCFF778CBK/@@download/ENCFF778CBK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF885OAB bigBed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF567YPK 3279565 ENCODE Processing Pipeline 6d0772a0c72a698dcc98aafe582da5e6 https://www.encodeproject.org/files/ENCFF885OAB/@@download/ENCFF885OAB.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF420FGU bigBed narrowPeak peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF838AKR 3504098 ENCODE Processing Pipeline 1f834fbd48d7d11e79741bb47230e25e https://www.encodeproject.org/files/ENCFF420FGU/@@download/ENCFF420FGU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF496MTI bigWig signal p-value ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF775GOU 485036270 ENCODE Processing Pipeline 0802e6758302e87fafa995ea1f30eced https://www.encodeproject.org/files/ENCFF496MTI/@@download/ENCFF496MTI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF597VFW bigWig signal p-value ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF781XPO 226596251 ENCODE Processing Pipeline 36ae6868f9dbb1b41b54f8d8102db57b https://www.encodeproject.org/files/ENCFF597VFW/@@download/ENCFF597VFW.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF563BZI bigWig signal p-value ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF276TCT, ENCFF461JUO, ENCFF775GOU, ENCFF781XPO 478890047 ENCODE Processing Pipeline 64b0a98db91f04fe4bea808772a7f6df https://www.encodeproject.org/files/ENCFF563BZI/@@download/ENCFF563BZI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF535FOL bigWig fold change over control ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF775GOU 391230981 ENCODE Processing Pipeline c19fdbf2ea578c95476920494e55ee33 https://www.encodeproject.org/files/ENCFF535FOL/@@download/ENCFF535FOL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF251OBJ bigWig fold change over control ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF276TCT, ENCFF781XPO 177920518 ENCODE Processing Pipeline 45dc9c06fb91d260a136a9162d1e54f7 https://www.encodeproject.org/files/ENCFF251OBJ/@@download/ENCFF251OBJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF652SDD bigWig fold change over control ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF276TCT, ENCFF461JUO, ENCFF775GOU, ENCFF781XPO 522807194 ENCODE Processing Pipeline 662af280f44c529415dd5501dadcd4a8 https://www.encodeproject.org/files/ENCFF652SDD/@@download/ENCFF652SDD.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF581WKJ bed narrowPeak replicated peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF567YPK, ENCFF664SRQ, ENCFF838AKR 1433062 ENCODE Processing Pipeline 669a4a8072577feb9d7dbf526516d21b https://www.encodeproject.org/files/ENCFF581WKJ/@@download/ENCFF581WKJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF474TQR bigBed narrowPeak replicated peaks ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF581WKJ 3138779 ENCODE Processing Pipeline 45c99d77f9301f6f0ae0ea869b18d5cb https://www.encodeproject.org/files/ENCFF474TQR/@@download/ENCFF474TQR.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002ANT fastq reads ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1280380493 Bing Ren, UCSD b3cfd4e3be5430065914bf7617a73d63 SRA:SRR3653351 https://www.encodeproject.org/files/ENCFF002ANT/@@download/ENCFF002ANT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002ANY fastq reads ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1532428740 Bing Ren, UCSD bf970a64bef6f6903421052f6b6db27f SRA:SRR3653352 https://www.encodeproject.org/files/ENCFF002ANY/@@download/ENCFF002ANY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APR/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity ENCFF557YHD bam alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANY, ENCFF806TVZ 902517968 ENCODE Processing Pipeline 5f83e1fdfb38fea72348cc06e5c5c897 https://www.encodeproject.org/files/ENCFF557YHD/@@download/ENCFF557YHD.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF895IJO bam alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANT, ENCFF806TVZ 682617671 ENCODE Processing Pipeline d0676d2b13370274361eac0c94b318ec https://www.encodeproject.org/files/ENCFF895IJO/@@download/ENCFF895IJO.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF484DVA bed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF557YHD, ENCFF893KXG 1197872 ENCODE Processing Pipeline bf6c3e8ca0a844fd3016d87b48aa6316 https://www.encodeproject.org/files/ENCFF484DVA/@@download/ENCFF484DVA.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF489VFH bed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF557YHD, ENCFF893KXG, ENCFF895IJO 1278798 ENCODE Processing Pipeline a8644863a3267f03719093bbb44b3dc1 https://www.encodeproject.org/files/ENCFF489VFH/@@download/ENCFF489VFH.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF217ZPG bed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF895IJO 1098840 ENCODE Processing Pipeline 7c84ec1885eeb81e6a7d72b9f04ce7cb https://www.encodeproject.org/files/ENCFF217ZPG/@@download/ENCFF217ZPG.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF656UCT bigBed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF484DVA 2899714 ENCODE Processing Pipeline 8346acd6aa527d8a894e1eb50f5a0285 https://www.encodeproject.org/files/ENCFF656UCT/@@download/ENCFF656UCT.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF449MYP bigBed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF217ZPG 2697351 ENCODE Processing Pipeline fa8ebc1f64d92cf5723292b1d42934b0 https://www.encodeproject.org/files/ENCFF449MYP/@@download/ENCFF449MYP.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF588TOS bigBed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF489VFH 3783992 ENCODE Processing Pipeline 669b822d7f7bb04a05b8f23580fe64ff https://www.encodeproject.org/files/ENCFF588TOS/@@download/ENCFF588TOS.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF048NAK bigWig signal p-value ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF895IJO 360027842 ENCODE Processing Pipeline 03211c0c508b8b5d0017a2acc9adc292 https://www.encodeproject.org/files/ENCFF048NAK/@@download/ENCFF048NAK.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF993JQU bigWig signal p-value ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF557YHD, ENCFF893KXG 312431248 ENCODE Processing Pipeline 4cef18caf01b9baef3e27035900c00cc https://www.encodeproject.org/files/ENCFF993JQU/@@download/ENCFF993JQU.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF105IZL bigWig signal p-value ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF557YHD, ENCFF893KXG, ENCFF895IJO 723573901 ENCODE Processing Pipeline 5464d50a926e02f4dcf9b61623c9fb54 https://www.encodeproject.org/files/ENCFF105IZL/@@download/ENCFF105IZL.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF782AWN bigWig fold change over control ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF895IJO 341461862 ENCODE Processing Pipeline 1277365f7e090ed8c258cd11214c3e54 https://www.encodeproject.org/files/ENCFF782AWN/@@download/ENCFF782AWN.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF512WSR bigWig fold change over control ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF557YHD, ENCFF893KXG 324755839 ENCODE Processing Pipeline f437bcf1db11b05bedaa2b453a736c85 https://www.encodeproject.org/files/ENCFF512WSR/@@download/ENCFF512WSR.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF507MWR bigWig fold change over control ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF557YHD, ENCFF893KXG, ENCFF895IJO 700172938 ENCODE Processing Pipeline fe2e2aef8320262d5e711960a491095c https://www.encodeproject.org/files/ENCFF507MWR/@@download/ENCFF507MWR.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF961OFC bigBed narrowPeak replicated peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF455CBK 2064188 ENCODE Processing Pipeline 29103f47a2684682fbe6ad462e929927 https://www.encodeproject.org/files/ENCFF961OFC/@@download/ENCFF961OFC.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF455CBK bed narrowPeak replicated peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF217ZPG, ENCFF484DVA, ENCFF489VFH 881545 ENCODE Processing Pipeline 6f05eba8093e36e1d0314bf0409ca1af https://www.encodeproject.org/files/ENCFF455CBK/@@download/ENCFF455CBK.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF606IBY bam unfiltered alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANT, ENCFF018NEO 1336256633 ENCODE Processing Pipeline 5772b06be31c927a4e3152a2691ea1d7 https://www.encodeproject.org/files/ENCFF606IBY/@@download/ENCFF606IBY.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF710AWZ bam alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANT, ENCFF018NEO 682514028 ENCODE Processing Pipeline 144632f895155981f5d30215616628cc https://www.encodeproject.org/files/ENCFF710AWZ/@@download/ENCFF710AWZ.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF974UNT bed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF710AWZ, ENCFF921XQX 1099291 ENCODE Processing Pipeline 5c659cb16be431fc4b23593b3b20703f https://www.encodeproject.org/files/ENCFF974UNT/@@download/ENCFF974UNT.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF987XJZ bigBed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF974UNT 2698428 ENCODE Processing Pipeline 732641740486975edede3c7f9a7c5781 https://www.encodeproject.org/files/ENCFF987XJZ/@@download/ENCFF987XJZ.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF209WOX bigWig signal p-value ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF710AWZ, ENCFF921XQX 371026502 ENCODE Processing Pipeline 5ad3e8ff405028e25a856d0917a150d7 https://www.encodeproject.org/files/ENCFF209WOX/@@download/ENCFF209WOX.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF647YWR bigWig fold change over control ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF710AWZ, ENCFF921XQX 340288725 ENCODE Processing Pipeline acb6db9a5a5ac52d87553d41c42ddaf7 https://www.encodeproject.org/files/ENCFF647YWR/@@download/ENCFF647YWR.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF913NZH bam unfiltered alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANY, ENCFF018NEO 1273058380 ENCODE Processing Pipeline ceb307b72caea02719f9b28250717eff https://www.encodeproject.org/files/ENCFF913NZH/@@download/ENCFF913NZH.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF885XJP bam alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANY, ENCFF018NEO 707041316 ENCODE Processing Pipeline a16b203b7743fba7154e983557f7122c https://www.encodeproject.org/files/ENCFF885XJP/@@download/ENCFF885XJP.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF610EUU bed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF885XJP 1173315 ENCODE Processing Pipeline 20c027c29c98b3d2f911ad17a433f1c7 https://www.encodeproject.org/files/ENCFF610EUU/@@download/ENCFF610EUU.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF248TDL bed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF710AWZ, ENCFF885XJP, ENCFF921XQX 1267512 ENCODE Processing Pipeline caa37cb9e38237961745f8705158e1f4 https://www.encodeproject.org/files/ENCFF248TDL/@@download/ENCFF248TDL.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF139KKU bigBed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF610EUU 2848202 ENCODE Processing Pipeline b3eb4eb565f254e4e155fb978a193394 https://www.encodeproject.org/files/ENCFF139KKU/@@download/ENCFF139KKU.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF195QIO bigBed narrowPeak peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248TDL 3755681 ENCODE Processing Pipeline f9f769eb965d4d83dcf265197b42329b https://www.encodeproject.org/files/ENCFF195QIO/@@download/ENCFF195QIO.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF337EWG bigWig signal p-value ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF710AWZ, ENCFF885XJP, ENCFF921XQX 561162952 ENCODE Processing Pipeline 2023f31138a1d8fdc9960cc719febbfb https://www.encodeproject.org/files/ENCFF337EWG/@@download/ENCFF337EWG.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF708MBZ bigWig fold change over control ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF710AWZ, ENCFF885XJP, ENCFF921XQX 694996803 ENCODE Processing Pipeline 4d2f8e4c0e6fba0e18fcecdc2bd40b2a https://www.encodeproject.org/files/ENCFF708MBZ/@@download/ENCFF708MBZ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF029UVT bed narrowPeak replicated peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248TDL, ENCFF610EUU, ENCFF974UNT 904296 ENCODE Processing Pipeline 24034d135170fafafe196a6456856547 https://www.encodeproject.org/files/ENCFF029UVT/@@download/ENCFF029UVT.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF943HLM bigWig signal p-value ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF885XJP 297171966 ENCODE Processing Pipeline 9ec6e784466e90f6ca1492ba6fd97271 https://www.encodeproject.org/files/ENCFF943HLM/@@download/ENCFF943HLM.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF071ZRI bigWig fold change over control ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF885XJP 311236348 ENCODE Processing Pipeline 49d8a0dc42a2e773a22d03e38f841321 https://www.encodeproject.org/files/ENCFF071ZRI/@@download/ENCFF071ZRI.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF745OYR bigBed narrowPeak replicated peaks ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF029UVT 2118743 ENCODE Processing Pipeline 57846ab280f85fe3e96c0f3c333d9340 https://www.encodeproject.org/files/ENCFF745OYR/@@download/ENCFF745OYR.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001IFJ bigBed narrowPeak peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUY 295473 Barbara Wold, Caltech 63780796b2388541f4a00426ad21c0a4 https://www.encodeproject.org/files/ENCFF001IFJ/@@download/ENCFF001IFJ.bigBed mm9 released mild to moderate bottlenecking, control low read depth ENCFF001IFK bam alignments ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHT 1605627491 Barbara Wold, Caltech 4e5aae20e38b48349f6530e6a264289b https://www.encodeproject.org/files/ENCFF001IFK/@@download/ENCFF001IFK.bam mm9 released mild to moderate bottlenecking, control low read depth ENCFF001IFL bigWig signal ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFK 166393332 Barbara Wold, Caltech f6ce7345e375d480a713ed96c76a3e07 https://www.encodeproject.org/files/ENCFF001IFL/@@download/ENCFF001IFL.bigWig mm9 released mild to moderate bottlenecking, control low read depth ENCFF001IHT fastq reads ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1584941463 Barbara Wold, Caltech 27e0edbf2b3e1b202e43cf5d2705a053 https://www.encodeproject.org/files/ENCFF001IHT/@@download/ENCFF001IHT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released mild to moderate bottlenecking, control low read depth ENCFF001XUY bed narrowPeak peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFK 149725 Barbara Wold, Caltech db99dba2b994c2d164bc6605a1ec4c3c https://www.encodeproject.org/files/ENCFF001XUY/@@download/ENCFF001XUY.bed.gz mm9 released mild to moderate bottlenecking, control low read depth ENCFF083XFF bam unfiltered alignments ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IHT, ENCFF018NEO 1691405126 ENCODE Processing Pipeline 628ddfb306f392b6dfe07329dfddc65b https://www.encodeproject.org/files/ENCFF083XFF/@@download/ENCFF083XFF.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF297STQ bam alignments ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IHT, ENCFF018NEO 1112541493 ENCODE Processing Pipeline 4fa4b3d54b1d9f841b068eaf6d37654e https://www.encodeproject.org/files/ENCFF297STQ/@@download/ENCFF297STQ.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF562MCA bigWig signal p-value ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297STQ, ENCFF875IDP 245998788 ENCODE Processing Pipeline c301bcb02a714e89457f2c97678317b6 https://www.encodeproject.org/files/ENCFF562MCA/@@download/ENCFF562MCA.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF862HLX bigWig fold change over control ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297STQ, ENCFF875IDP 306469003 ENCODE Processing Pipeline 7ce4a1d13b489e81c06b5614daf7efc3 https://www.encodeproject.org/files/ENCFF862HLX/@@download/ENCFF862HLX.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF258ZCJ bed narrowPeak peaks and background as input for IDR ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297STQ, ENCFF875IDP 4731402 ENCODE Processing Pipeline 502b039b2ace55c11395a41f86d4a160 https://www.encodeproject.org/files/ENCFF258ZCJ/@@download/ENCFF258ZCJ.bed.gz mm10 released mild to moderate bottlenecking, control low read depth ENCFF981SVD bigBed narrowPeak peaks and background as input for IDR ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258ZCJ 10538891 ENCODE Processing Pipeline 8a31d5dfd0922eab4293c0438590fcb0 https://www.encodeproject.org/files/ENCFF981SVD/@@download/ENCFF981SVD.bigBed mm10 released mild to moderate bottlenecking, control low read depth ENCFF144MZR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258ZCJ, ENCFF547MET 349559 ENCODE Processing Pipeline daa82118501c515dc2224ea26b7a75c1 https://www.encodeproject.org/files/ENCFF144MZR/@@download/ENCFF144MZR.bed.gz mm10 released mild to moderate bottlenecking, control low read depth ENCFF991LVG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF144MZR 710487 ENCODE Processing Pipeline 39fecd04a0c7f2a18fef415fd913dc4c https://www.encodeproject.org/files/ENCFF991LVG/@@download/ENCFF991LVG.bigBed mm10 released mild to moderate bottlenecking, control low read depth ENCFF001IHM bigBed narrowPeak peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVI 408779 Barbara Wold, Caltech 8dc3fb8d63960750e1e9e9a313ad2248 https://www.encodeproject.org/files/ENCFF001IHM/@@download/ENCFF001IHM.bigBed mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001IHN fastq reads ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 362051903 Barbara Wold, Caltech 4ec82286ec83cb00d075233992da259c https://www.encodeproject.org/files/ENCFF001IHN/@@download/ENCFF001IHN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHO fastq reads ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 546755018 Barbara Wold, Caltech 6e545329c27a063f054f5fafa23ddc4b https://www.encodeproject.org/files/ENCFF001IHO/@@download/ENCFF001IHO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHP fastq reads ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 559717731 Barbara Wold, Caltech 9da3908e4581c67589e4bf04312482ef https://www.encodeproject.org/files/ENCFF001IHP/@@download/ENCFF001IHP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHQ bigWig signal ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHR 133175084 Barbara Wold, Caltech 0355ab38a4c98284c7a93b83347543d6 https://www.encodeproject.org/files/ENCFF001IHQ/@@download/ENCFF001IHQ.bigWig mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001IHR bam alignments ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHN, ENCFF001IHO, ENCFF001IHP 1598424109 Barbara Wold, Caltech 37811e0265dc66a8782c0692a533c72d https://www.encodeproject.org/files/ENCFF001IHR/@@download/ENCFF001IHR.bam mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001XVI bed narrowPeak peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHR 217819 Barbara Wold, Caltech 97c13b2164295656f8d5b613b1adc748 https://www.encodeproject.org/files/ENCFF001XVI/@@download/ENCFF001XVI.bed.gz mm9 released low read depth insufficient read length, control insufficient read depth ENCFF415FYP bam unfiltered alignments ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHN, ENCFF001IHO, ENCFF001IHP, ENCFF018NEO 1681319964 ENCODE Processing Pipeline ac2e33310b3ba3b0d5d71ee1f01d6536 https://www.encodeproject.org/files/ENCFF415FYP/@@download/ENCFF415FYP.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF887LKL bam alignments ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHN, ENCFF001IHO, ENCFF001IHP, ENCFF018NEO 737329112 ENCODE Processing Pipeline cd0655c39dfe2af36a254dee4c723ddb https://www.encodeproject.org/files/ENCFF887LKL/@@download/ENCFF887LKL.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF925GDS bigWig signal p-value ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF887LKL 220829899 ENCODE Processing Pipeline 88199074b0acfe6a3e70f5100a5c8438 https://www.encodeproject.org/files/ENCFF925GDS/@@download/ENCFF925GDS.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF287INI bed narrowPeak peaks and background as input for IDR ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF887LKL 4400187 ENCODE Processing Pipeline 6430fed4a18fc1ba3c111194ec7bef27 https://www.encodeproject.org/files/ENCFF287INI/@@download/ENCFF287INI.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF774MAL bigBed narrowPeak peaks and background as input for IDR ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF287INI 10243832 ENCODE Processing Pipeline 6ea3688a4bac39bf201f3ad505242071 https://www.encodeproject.org/files/ENCFF774MAL/@@download/ENCFF774MAL.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF462ONT bigWig fold change over control ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF887LKL 245513037 ENCODE Processing Pipeline fabe20c48126ca23d6e3bfd60398b51c https://www.encodeproject.org/files/ENCFF462ONT/@@download/ENCFF462ONT.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF423NWT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF287INI, ENCFF547MET 308533 ENCODE Processing Pipeline aa12d43fe9c3c0eaba9c9cd4e76f0a34 https://www.encodeproject.org/files/ENCFF423NWT/@@download/ENCFF423NWT.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF570PGV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF423NWT 578697 ENCODE Processing Pipeline 6dcdd1754bbe67624cbd26099cb4c199 https://www.encodeproject.org/files/ENCFF570PGV/@@download/ENCFF570PGV.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF002BWT fastq reads ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1297979970 Bing Ren, UCSD f55a7c142199644ca063d34ebda3a2d0 SRA:SRR3651419 https://www.encodeproject.org/files/ENCFF002BWT/@@download/ENCFF002BWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXQ/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF002BWW fastq reads ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1234601086 Bing Ren, UCSD 42d3033f66b287bdac015f9f6775c723 SRA:SRR3651420 https://www.encodeproject.org/files/ENCFF002BWW/@@download/ENCFF002BWW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF136WYJ bam alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWT, ENCFF806TVZ 949302941 ENCODE Processing Pipeline dda93c89499656ae59635fed0a16d6ad https://www.encodeproject.org/files/ENCFF136WYJ/@@download/ENCFF136WYJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF982WCB bam alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWW, ENCFF806TVZ 943865911 ENCODE Processing Pipeline 02cac5b61b93fb8ecd1ab56d19de435a https://www.encodeproject.org/files/ENCFF982WCB/@@download/ENCFF982WCB.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF605WNO bed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF136WYJ, ENCFF731DCA 696049 ENCODE Processing Pipeline bbd596749826e7d7fbec3aadd7b0274c https://www.encodeproject.org/files/ENCFF605WNO/@@download/ENCFF605WNO.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF878XOD bed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF731DCA, ENCFF982WCB 663257 ENCODE Processing Pipeline b00de16b28f6e07d9e99bae21bd2e936 https://www.encodeproject.org/files/ENCFF878XOD/@@download/ENCFF878XOD.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF393BPN bigBed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF878XOD 2130683 ENCODE Processing Pipeline 36acdd4e64494dda7e17fa989a3c77fb https://www.encodeproject.org/files/ENCFF393BPN/@@download/ENCFF393BPN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF851HMB bed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF136WYJ, ENCFF731DCA, ENCFF982WCB 653539 ENCODE Processing Pipeline 823f022207c090ec938ee4231a06882a https://www.encodeproject.org/files/ENCFF851HMB/@@download/ENCFF851HMB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF218JMO bigBed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF605WNO 2215756 ENCODE Processing Pipeline fc8178f76b31e6e338e552955f841a1b https://www.encodeproject.org/files/ENCFF218JMO/@@download/ENCFF218JMO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF518OFS bigWig signal p-value ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF731DCA, ENCFF982WCB 404048781 ENCODE Processing Pipeline 8085a9506bf6dcc11b538051675e8ff7 https://www.encodeproject.org/files/ENCFF518OFS/@@download/ENCFF518OFS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF874MYV bigWig signal p-value ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF136WYJ, ENCFF731DCA, ENCFF982WCB 462659066 ENCODE Processing Pipeline ca23a4563942447fde587f8e700f91a0 https://www.encodeproject.org/files/ENCFF874MYV/@@download/ENCFF874MYV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF115KEF bigBed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF851HMB 2065976 ENCODE Processing Pipeline 429b85260884dde34a42f1ab4f93a960 https://www.encodeproject.org/files/ENCFF115KEF/@@download/ENCFF115KEF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF574VII bigWig signal p-value ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF136WYJ, ENCFF731DCA 462054563 ENCODE Processing Pipeline 783b4480ac1562af2033597b23542e5b https://www.encodeproject.org/files/ENCFF574VII/@@download/ENCFF574VII.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF346GLX bigWig fold change over control ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF126TZS, ENCFF136WYJ, ENCFF731DCA 353207760 ENCODE Processing Pipeline c1dc5c7b33288f231981ac8e567928f3 https://www.encodeproject.org/files/ENCFF346GLX/@@download/ENCFF346GLX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF890BJL bigWig fold change over control ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF126TZS, ENCFF731DCA, ENCFF982WCB 371031697 ENCODE Processing Pipeline 42391c927c64ffe6c62df65aca302b82 https://www.encodeproject.org/files/ENCFF890BJL/@@download/ENCFF890BJL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF282WMP bigWig fold change over control ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF126TZS, ENCFF136WYJ, ENCFF731DCA, ENCFF982WCB 568315923 ENCODE Processing Pipeline eac5a94f4782da58e8f6e15174149f44 https://www.encodeproject.org/files/ENCFF282WMP/@@download/ENCFF282WMP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF725YBJ bed narrowPeak replicated peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF605WNO, ENCFF851HMB, ENCFF878XOD 855988 ENCODE Processing Pipeline 15a6ee778b87de04d752a6848132fb02 https://www.encodeproject.org/files/ENCFF725YBJ/@@download/ENCFF725YBJ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF486XLI bigBed narrowPeak replicated peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF725YBJ 1975789 ENCODE Processing Pipeline 1c5f37e6c96ab9ccd3cd37c78b8ade92 https://www.encodeproject.org/files/ENCFF486XLI/@@download/ENCFF486XLI.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF937BVU bam unfiltered alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWT, ENCFF018NEO 1509268933 ENCODE Processing Pipeline 4e29f5a7774415be6e0e4ba4ba699e12 https://www.encodeproject.org/files/ENCFF937BVU/@@download/ENCFF937BVU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF916WIR bam unfiltered alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWW, ENCFF018NEO 1460305048 ENCODE Processing Pipeline 04ebaf7cefcb104fb827a4ec3fef785b https://www.encodeproject.org/files/ENCFF916WIR/@@download/ENCFF916WIR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF107RED bam alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWT, ENCFF018NEO 949183027 ENCODE Processing Pipeline 75eae53ff5a77bef13112a691cec4a8e https://www.encodeproject.org/files/ENCFF107RED/@@download/ENCFF107RED.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF229TZP bam alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWW, ENCFF018NEO 943717915 ENCODE Processing Pipeline 89a6e08636a6a3e2344fff12e5dd9c3a https://www.encodeproject.org/files/ENCFF229TZP/@@download/ENCFF229TZP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF701PFH bigBed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF050ENZ 1872122 ENCODE Processing Pipeline 36f348e135265c5b1c40be02fbdfb9e2 https://www.encodeproject.org/files/ENCFF701PFH/@@download/ENCFF701PFH.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF050ENZ bed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF107RED, ENCFF276TCT 560828 ENCODE Processing Pipeline 796db572ddf31d4aee310356ce5a7f46 https://www.encodeproject.org/files/ENCFF050ENZ/@@download/ENCFF050ENZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF840HYP bed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF229TZP, ENCFF276TCT, ENCFF461JUO 664149 ENCODE Processing Pipeline f8e3e0c16cd09769fd844ddd2a889260 https://www.encodeproject.org/files/ENCFF840HYP/@@download/ENCFF840HYP.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF522BLU bed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF107RED, ENCFF229TZP, ENCFF276TCT, ENCFF461JUO 654717 ENCODE Processing Pipeline 9e8ab8b9a9327fe20fcb1d4b164c97a7 https://www.encodeproject.org/files/ENCFF522BLU/@@download/ENCFF522BLU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF032DES bigBed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF840HYP 2133177 ENCODE Processing Pipeline aa729e77139092562f349ea3f3248959 https://www.encodeproject.org/files/ENCFF032DES/@@download/ENCFF032DES.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF120WAQ bigBed narrowPeak peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF522BLU 2064097 ENCODE Processing Pipeline 4a03c5ba00b43c2d67a545773ff8bd5c https://www.encodeproject.org/files/ENCFF120WAQ/@@download/ENCFF120WAQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF453RET bigWig signal p-value ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF107RED, ENCFF276TCT 230808939 ENCODE Processing Pipeline db738a724df9381358efd5d06b585082 https://www.encodeproject.org/files/ENCFF453RET/@@download/ENCFF453RET.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF656MDW bigWig signal p-value ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF229TZP, ENCFF276TCT, ENCFF461JUO 369078043 ENCODE Processing Pipeline b5377149a23eb0ab6046786acc3a2b25 https://www.encodeproject.org/files/ENCFF656MDW/@@download/ENCFF656MDW.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF582HVX bigWig signal p-value ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF107RED, ENCFF229TZP, ENCFF276TCT, ENCFF461JUO 468921081 ENCODE Processing Pipeline 355b58f0236c8bac9827af0372210c19 https://www.encodeproject.org/files/ENCFF582HVX/@@download/ENCFF582HVX.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF250GCR bigWig fold change over control ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF229TZP, ENCFF276TCT, ENCFF461JUO 371038156 ENCODE Processing Pipeline d7b3694fe9c5fcb0b9882a916841d6f0 https://www.encodeproject.org/files/ENCFF250GCR/@@download/ENCFF250GCR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF890RFS bigWig fold change over control ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF107RED, ENCFF276TCT 271505733 ENCODE Processing Pipeline 5b4f2b0b2c3c2b6a284959bced1b0e03 https://www.encodeproject.org/files/ENCFF890RFS/@@download/ENCFF890RFS.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF808VAT bigWig fold change over control ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF107RED, ENCFF229TZP, ENCFF276TCT, ENCFF461JUO 573292900 ENCODE Processing Pipeline 8e6f23848d54b7ccb80c1f94ec7f7e35 https://www.encodeproject.org/files/ENCFF808VAT/@@download/ENCFF808VAT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF003WOW bed narrowPeak replicated peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF050ENZ, ENCFF522BLU, ENCFF840HYP 835727 ENCODE Processing Pipeline 1b22eacd66b62f3e7fb70fa312d34853 https://www.encodeproject.org/files/ENCFF003WOW/@@download/ENCFF003WOW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF381GRK bigBed narrowPeak replicated peaks ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF003WOW 1929847 ENCODE Processing Pipeline 3ba414053c465e4e8d851f83292912e3 https://www.encodeproject.org/files/ENCFF381GRK/@@download/ENCFF381GRK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF001IDN bam alignments ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IEL 1034271498 Barbara Wold, Caltech 424b19dd0863754dce82702375d58d72 https://www.encodeproject.org/files/ENCFF001IDN/@@download/ENCFF001IDN.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001IDO bigBed narrowPeak peaks ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUW 208098 Barbara Wold, Caltech 26ea7452bca031ccfb7a09c1f4a78124 https://www.encodeproject.org/files/ENCFF001IDO/@@download/ENCFF001IDO.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001IDQ bigWig signal ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDN 74880827 Barbara Wold, Caltech 0c970704a3d5a8b3c2eb461e31112ad0 https://www.encodeproject.org/files/ENCFF001IDQ/@@download/ENCFF001IDQ.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001IEL fastq reads ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 36 single-ended 924713947 Barbara Wold, Caltech 123a1f5c44fe1641162f67ae54da87c1 https://www.encodeproject.org/files/ENCFF001IEL/@@download/ENCFF001IEL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length insufficient read depth ENCFF001XUW bed narrowPeak peaks ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDN 105916 Barbara Wold, Caltech f6cd966c8d996d10147c1c026d436a04 https://www.encodeproject.org/files/ENCFF001XUW/@@download/ENCFF001XUW.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF869INI bam unfiltered alignments ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 36 ENCFF001IEL, ENCFF018NEO 1125023914 ENCODE Processing Pipeline 3a038f8e5cd9a8dcc4c190bbb5b551f5 https://www.encodeproject.org/files/ENCFF869INI/@@download/ENCFF869INI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF694XWD bam alignments ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 36 ENCFF001IEL, ENCFF018NEO 347150574 ENCODE Processing Pipeline 7bad4e1609275f190dc904484fe076a1 https://www.encodeproject.org/files/ENCFF694XWD/@@download/ENCFF694XWD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF096EGJ fastq reads ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1025246041 Richard Myers, HAIB 66467ed21327954b452a92a13adf11d3 SRA:SRR5111533 https://www.encodeproject.org/files/ENCFF096EGJ/@@download/ENCFF096EGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF331QQL/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF803MRJ fastq reads ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1083660814 Richard Myers, HAIB 83120264679b69e2e67591356b17ed60 SRA:SRR5111532 https://www.encodeproject.org/files/ENCFF803MRJ/@@download/ENCFF803MRJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF331QQL/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF605FQF bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF803MRJ, ENCFF806TVZ 815286530 ENCODE Processing Pipeline 6f121118ad2d7b13f4d8bfb9f3af7b20 https://www.encodeproject.org/files/ENCFF605FQF/@@download/ENCFF605FQF.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF579VFN bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF096EGJ, ENCFF806TVZ 733430746 ENCODE Processing Pipeline a6365a2474a69d215d762b55ab184c4f https://www.encodeproject.org/files/ENCFF579VFN/@@download/ENCFF579VFN.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF135YTD bam unfiltered alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 1142167584 ENCODE Processing Pipeline 2c845af5ebc39817a1e2091b2c1434b6 https://www.encodeproject.org/files/ENCFF135YTD/@@download/ENCFF135YTD.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF298WML bam unfiltered alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 1056189022 ENCODE Processing Pipeline 7b46e6bbfece35c25ed5276556a7e4cf https://www.encodeproject.org/files/ENCFF298WML/@@download/ENCFF298WML.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF676SED bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 815126823 ENCODE Processing Pipeline 709c251b972bc0a6fd186ecd78d7ec81 https://www.encodeproject.org/files/ENCFF676SED/@@download/ENCFF676SED.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF844ZSH bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 733279921 ENCODE Processing Pipeline 92902cb0ae4464000bebf544ca3cf3db https://www.encodeproject.org/files/ENCFF844ZSH/@@download/ENCFF844ZSH.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF488MHC bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 270803645 ENCODE Processing Pipeline 3d486be419756a79dab1fb053c17577a https://www.encodeproject.org/files/ENCFF488MHC/@@download/ENCFF488MHC.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF455ESQ bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 271209406 ENCODE Processing Pipeline a8a0ccaf0e0d1a7c1bb7f5ad497afe38 https://www.encodeproject.org/files/ENCFF455ESQ/@@download/ENCFF455ESQ.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF587JOJ bed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 4484074 ENCODE Processing Pipeline 4c87cc3b529a7e93415bd7a36983a029 https://www.encodeproject.org/files/ENCFF587JOJ/@@download/ENCFF587JOJ.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF156AIW bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 343990991 ENCODE Processing Pipeline 4d42283f26f02804907ae16b46ca1fdf https://www.encodeproject.org/files/ENCFF156AIW/@@download/ENCFF156AIW.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF691ULU bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 460340272 ENCODE Processing Pipeline 1aefe2ca56dd25282c824a5a4ff3edc3 https://www.encodeproject.org/files/ENCFF691ULU/@@download/ENCFF691ULU.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF689ZFH bed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 5294966 ENCODE Processing Pipeline 45a735303e49bf66eaf81f68d5347030 https://www.encodeproject.org/files/ENCFF689ZFH/@@download/ENCFF689ZFH.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF191NHQ bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 294481670 ENCODE Processing Pipeline 3601bd279740eb08ac74e10765fb60b3 https://www.encodeproject.org/files/ENCFF191NHQ/@@download/ENCFF191NHQ.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF900YUX bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 361534050 ENCODE Processing Pipeline a9519b6c17bf4109af743e1346971d23 https://www.encodeproject.org/files/ENCFF900YUX/@@download/ENCFF900YUX.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF449LBJ bed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 5614496 ENCODE Processing Pipeline 9c4119b9879223f55ef7d11c9de1f27e https://www.encodeproject.org/files/ENCFF449LBJ/@@download/ENCFF449LBJ.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF190CMG bigBed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF689ZFH 13124109 ENCODE Processing Pipeline 31b8f70695459e874b10c6643982a197 https://www.encodeproject.org/files/ENCFF190CMG/@@download/ENCFF190CMG.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF317UVR bigBed narrowPeak conservative idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF632FCA 1644282 ENCODE Processing Pipeline 33b34151de35b67a30565af836345772 https://www.encodeproject.org/files/ENCFF317UVR/@@download/ENCFF317UVR.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF632FCA bed narrowPeak conservative idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ, ENCFF547MET, ENCFF587JOJ, ENCFF689ZFH 808845 ENCODE Processing Pipeline b46835ac64e65dd2854b57b3dba7912a https://www.encodeproject.org/files/ENCFF632FCA/@@download/ENCFF632FCA.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF332QLW bed narrowPeak optimal idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ, ENCFF547MET, ENCFF587JOJ, ENCFF689ZFH 828425 ENCODE Processing Pipeline c50d9c738cf0414af6fbf5275be99b53 https://www.encodeproject.org/files/ENCFF332QLW/@@download/ENCFF332QLW.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF735TCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF332QLW 1680751 ENCODE Processing Pipeline b2a31ce4523bd55334348458780fae86 https://www.encodeproject.org/files/ENCFF735TCQ/@@download/ENCFF735TCQ.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF368MGB bigBed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF587JOJ 10592630 ENCODE Processing Pipeline 7da790889d3a4b986073c6826b8cfde5 https://www.encodeproject.org/files/ENCFF368MGB/@@download/ENCFF368MGB.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF440ATU bigBed narrowPeak peaks and background as input for IDR ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ 11141155 ENCODE Processing Pipeline bcf19cc892deda942ebd17444a5f842b https://www.encodeproject.org/files/ENCFF440ATU/@@download/ENCFF440ATU.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF001IIL bigBed narrowPeak peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVN 220601 Barbara Wold, Caltech 8ec3c05ce3bafa87b4f129bb2f3da385 https://www.encodeproject.org/files/ENCFF001IIL/@@download/ENCFF001IIL.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IIM bigWig signal ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIN 120315318 Barbara Wold, Caltech 51ab5803b732f2bed3dfcc4f787ed5b2 https://www.encodeproject.org/files/ENCFF001IIM/@@download/ENCFF001IIM.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IIN bam alignments ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIZ 1321418831 Barbara Wold, Caltech 9f12078f09b4f25d6349cff43f7aa62f https://www.encodeproject.org/files/ENCFF001IIN/@@download/ENCFF001IIN.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IIZ fastq reads ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1316268966 Barbara Wold, Caltech a70ed949cc8dacb54ebf6cf051a40d2f https://www.encodeproject.org/files/ENCFF001IIZ/@@download/ENCFF001IIZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001XVN bed narrowPeak peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIN 112641 Barbara Wold, Caltech 2e53e72603c97d92a06e0a216e331952 https://www.encodeproject.org/files/ENCFF001XVN/@@download/ENCFF001XVN.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF580ZOK bam unfiltered alignments ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIZ, ENCFF018NEO 1396389193 ENCODE Processing Pipeline 5bc4f812dce495ca1a6237a6be33488e https://www.encodeproject.org/files/ENCFF580ZOK/@@download/ENCFF580ZOK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF094XRA bam alignments ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIZ, ENCFF018NEO 836214587 ENCODE Processing Pipeline fd39221ac1f262382e40b2b1fcfb597a https://www.encodeproject.org/files/ENCFF094XRA/@@download/ENCFF094XRA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF899ZDS bigWig signal p-value ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF094XRA, ENCFF993HAY 323001579 ENCODE Processing Pipeline c036f0dcfd1f8d23164992c696e63f47 https://www.encodeproject.org/files/ENCFF899ZDS/@@download/ENCFF899ZDS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF170WKG bigWig fold change over control ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF094XRA, ENCFF993HAY 265227162 ENCODE Processing Pipeline 79836ec4169e701eb3de0122d2713d5a https://www.encodeproject.org/files/ENCFF170WKG/@@download/ENCFF170WKG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF212ZQX bed narrowPeak peaks and background as input for IDR ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF094XRA, ENCFF993HAY 3956607 ENCODE Processing Pipeline d85e91b703fd70f67c4c976f8250c6b8 https://www.encodeproject.org/files/ENCFF212ZQX/@@download/ENCFF212ZQX.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF903SNT bigBed narrowPeak peaks and background as input for IDR ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF212ZQX 10116712 ENCODE Processing Pipeline 20f18ef3575c6535d188e3f07404f646 https://www.encodeproject.org/files/ENCFF903SNT/@@download/ENCFF903SNT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF828ODZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297QNM 335255 ENCODE Processing Pipeline bd6e972362613cb9b66cdad8f34fc231 https://www.encodeproject.org/files/ENCFF828ODZ/@@download/ENCFF828ODZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF297QNM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF212ZQX, ENCFF547MET 181696 ENCODE Processing Pipeline 3645230ec11c37e448bbedfbbf375bd9 https://www.encodeproject.org/files/ENCFF297QNM/@@download/ENCFF297QNM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF286ZHO fastq reads ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3105888778 Bing Ren, UCSD 03b36d9cdf7e323046093809335f90f0 SRA:SRR3653136 https://www.encodeproject.org/files/ENCFF286ZHO/@@download/ENCFF286ZHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released inconsistent platforms ENCFF093GXT fastq reads ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3689687261 Bing Ren, UCSD dff76d34964f742f5e6627f56bae1b18 SRA:SRR3653137 https://www.encodeproject.org/files/ENCFF093GXT/@@download/ENCFF093GXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released inconsistent platforms ENCFF927PUL bam alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF093GXT, ENCFF806TVZ 3196997748 ENCODE Processing Pipeline 7bcc4ca31446954331ec010b4e0930ba https://www.encodeproject.org/files/ENCFF927PUL/@@download/ENCFF927PUL.bam mm10-minimal archived inconsistent platforms ENCFF279LIE bam alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF286ZHO, ENCFF806TVZ 2833711533 ENCODE Processing Pipeline 38512c05ba4dd5c054643f5d18db9e77 https://www.encodeproject.org/files/ENCFF279LIE/@@download/ENCFF279LIE.bam mm10-minimal archived inconsistent platforms ENCFF578PPQ bed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF279LIE, ENCFF949WTQ 3266738 ENCODE Processing Pipeline 7271d373fb593ac70cefd8526782e7bd https://www.encodeproject.org/files/ENCFF578PPQ/@@download/ENCFF578PPQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF391KWM bed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF927PUL, ENCFF949WTQ 2579360 ENCODE Processing Pipeline b63441761fe65c6cf002e360c154bf96 https://www.encodeproject.org/files/ENCFF391KWM/@@download/ENCFF391KWM.bed.gz mm10-minimal archived inconsistent platforms ENCFF072ZVK bed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF279LIE, ENCFF927PUL, ENCFF949WTQ 2759008 ENCODE Processing Pipeline 5da1693cf7fea2d4c12869e4a143cd65 https://www.encodeproject.org/files/ENCFF072ZVK/@@download/ENCFF072ZVK.bed.gz mm10-minimal archived inconsistent platforms ENCFF826EKJ bigBed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF578PPQ 8731967 ENCODE Processing Pipeline 998c6e0c80334b5e188928f0e01da4fa https://www.encodeproject.org/files/ENCFF826EKJ/@@download/ENCFF826EKJ.bigBed mm10-minimal archived inconsistent platforms ENCFF840FAT bigBed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF072ZVK 7433117 ENCODE Processing Pipeline dd93e656b0cb19e22ed652c820cc289d https://www.encodeproject.org/files/ENCFF840FAT/@@download/ENCFF840FAT.bigBed mm10-minimal archived inconsistent platforms ENCFF106ARJ bigBed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF391KWM 7140228 ENCODE Processing Pipeline 248de12b169f0d77142494a29cceb68f https://www.encodeproject.org/files/ENCFF106ARJ/@@download/ENCFF106ARJ.bigBed mm10-minimal archived inconsistent platforms ENCFF446IOQ bigWig signal p-value ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF279LIE, ENCFF949WTQ 1044068663 ENCODE Processing Pipeline 19aeedb13ef89df386b4e0bfd1712d5c https://www.encodeproject.org/files/ENCFF446IOQ/@@download/ENCFF446IOQ.bigWig mm10-minimal archived inconsistent platforms ENCFF547GSG bigWig signal p-value ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF927PUL, ENCFF949WTQ 1201633610 ENCODE Processing Pipeline 329ad7ece92219bcde806cdd9adf7b22 https://www.encodeproject.org/files/ENCFF547GSG/@@download/ENCFF547GSG.bigWig mm10-minimal archived inconsistent platforms ENCFF710FXQ bigWig signal p-value ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF279LIE, ENCFF927PUL, ENCFF949WTQ 1277624843 ENCODE Processing Pipeline 3181b758c2f33b16c0deae978c674986 https://www.encodeproject.org/files/ENCFF710FXQ/@@download/ENCFF710FXQ.bigWig mm10-minimal archived inconsistent platforms ENCFF285HSF bigWig fold change over control ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF279LIE, ENCFF949WTQ 1074268710 ENCODE Processing Pipeline 4e84bf48fd95eecc3478ba707f26ba7a https://www.encodeproject.org/files/ENCFF285HSF/@@download/ENCFF285HSF.bigWig mm10-minimal archived inconsistent platforms ENCFF428JFU bigWig fold change over control ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF927PUL, ENCFF949WTQ 1181284762 ENCODE Processing Pipeline 250a25c2ff815686144f877ab304c57e https://www.encodeproject.org/files/ENCFF428JFU/@@download/ENCFF428JFU.bigWig mm10-minimal archived inconsistent platforms ENCFF244DQP bigWig fold change over control ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF279LIE, ENCFF927PUL, ENCFF949WTQ 1642528795 ENCODE Processing Pipeline e682ca32d6239e9d1f73fbfea447b426 https://www.encodeproject.org/files/ENCFF244DQP/@@download/ENCFF244DQP.bigWig mm10-minimal archived inconsistent platforms ENCFF995NTT bed narrowPeak replicated peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF072ZVK, ENCFF391KWM, ENCFF578PPQ 2804283 ENCODE Processing Pipeline e0b409e6eaf2dc0fa7bde49d54e2d23d https://www.encodeproject.org/files/ENCFF995NTT/@@download/ENCFF995NTT.bed.gz mm10-minimal archived inconsistent platforms ENCFF516JWX bigBed narrowPeak replicated peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF995NTT 5812273 ENCODE Processing Pipeline 024fa842663b647ef86331cf9ffae77f https://www.encodeproject.org/files/ENCFF516JWX/@@download/ENCFF516JWX.bigBed mm10-minimal archived inconsistent platforms ENCFF996NMO bam unfiltered alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF093GXT 4401354189 ENCODE Processing Pipeline f9e2ddbce12516c850bb707c93463d19 https://www.encodeproject.org/files/ENCFF996NMO/@@download/ENCFF996NMO.bam mm10 released inconsistent platforms ENCFF736MIW bam unfiltered alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF286ZHO 3711373982 ENCODE Processing Pipeline 7d49a2008126e0915957d70a9edba601 https://www.encodeproject.org/files/ENCFF736MIW/@@download/ENCFF736MIW.bam mm10 released inconsistent platforms ENCFF338GKD bam alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF286ZHO 2833148973 ENCODE Processing Pipeline 76254370d3e5967da8c772d9e030a01b https://www.encodeproject.org/files/ENCFF338GKD/@@download/ENCFF338GKD.bam mm10 released inconsistent platforms ENCFF555LDI bam alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF093GXT 3196365102 ENCODE Processing Pipeline dfc7346fcdaa74df2f4658d377c137e7 https://www.encodeproject.org/files/ENCFF555LDI/@@download/ENCFF555LDI.bam mm10 released inconsistent platforms ENCFF047UWD bed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF338GKD, ENCFF555LDI 3199770 ENCODE Processing Pipeline 4cd4d38bc724ed00a8727e5d55796c38 https://www.encodeproject.org/files/ENCFF047UWD/@@download/ENCFF047UWD.bed.gz mm10 released inconsistent platforms ENCFF505NJN bed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079JAD, ENCFF269JKO, ENCFF555LDI 2688445 ENCODE Processing Pipeline 843f63a463884731b2e2ab9d14675bf3 https://www.encodeproject.org/files/ENCFF505NJN/@@download/ENCFF505NJN.bed.gz mm10 released inconsistent platforms ENCFF110UFU bed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF338GKD 3012274 ENCODE Processing Pipeline 83e7d245f5252aa5d498090f9b417384 https://www.encodeproject.org/files/ENCFF110UFU/@@download/ENCFF110UFU.bed.gz mm10 released inconsistent platforms ENCFF528UZK bigBed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF110UFU 8060942 ENCODE Processing Pipeline beae5abf3e34011cb8a03e33fe9e017d https://www.encodeproject.org/files/ENCFF528UZK/@@download/ENCFF528UZK.bigBed mm10 released inconsistent platforms ENCFF343YIC bigBed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF505NJN 7416476 ENCODE Processing Pipeline 1d54f81ba87925699bd3737612001d26 https://www.encodeproject.org/files/ENCFF343YIC/@@download/ENCFF343YIC.bigBed mm10 released inconsistent platforms ENCFF993GLK bigBed narrowPeak peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF047UWD 8551310 ENCODE Processing Pipeline 830d9d841c5bbac022212117a17eca1c https://www.encodeproject.org/files/ENCFF993GLK/@@download/ENCFF993GLK.bigBed mm10 released inconsistent platforms ENCFF942XXZ bigWig signal p-value ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF338GKD 688608194 ENCODE Processing Pipeline 3de8493bec8ec8e35500e7f57b6f3d1c https://www.encodeproject.org/files/ENCFF942XXZ/@@download/ENCFF942XXZ.bigWig mm10 released inconsistent platforms ENCFF317GZF bigWig signal p-value ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079JAD, ENCFF269JKO, ENCFF555LDI 1067345342 ENCODE Processing Pipeline b7ca3940b0ab1babc8b4ccf960bc5a02 https://www.encodeproject.org/files/ENCFF317GZF/@@download/ENCFF317GZF.bigWig mm10 released inconsistent platforms ENCFF782KRQ bigWig signal p-value ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF338GKD, ENCFF555LDI 1716983854 ENCODE Processing Pipeline e44def1fdc78ce32f1bf4a74f0c26ca9 https://www.encodeproject.org/files/ENCFF782KRQ/@@download/ENCFF782KRQ.bigWig mm10 released inconsistent platforms ENCFF741OMG bigWig fold change over control ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF338GKD 947697014 ENCODE Processing Pipeline 05457ace065cfbf17a89aa20d32b8772 https://www.encodeproject.org/files/ENCFF741OMG/@@download/ENCFF741OMG.bigWig mm10 released inconsistent platforms ENCFF840JNB bigWig fold change over control ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079JAD, ENCFF269JKO, ENCFF555LDI 1300148669 ENCODE Processing Pipeline c938aebda3a92a5c0db9eafaf6197e97 https://www.encodeproject.org/files/ENCFF840JNB/@@download/ENCFF840JNB.bigWig mm10 released inconsistent platforms ENCFF283EBS bigWig fold change over control ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF338GKD, ENCFF555LDI 1751853528 ENCODE Processing Pipeline d99f94ff24005924fec9b14478eb7c2c https://www.encodeproject.org/files/ENCFF283EBS/@@download/ENCFF283EBS.bigWig mm10 released inconsistent platforms ENCFF979AUE bed narrowPeak replicated peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF047UWD, ENCFF110UFU, ENCFF505NJN 2848412 ENCODE Processing Pipeline 3371c15d42d3a8c8009dbade8f41c8a9 https://www.encodeproject.org/files/ENCFF979AUE/@@download/ENCFF979AUE.bed.gz mm10 released inconsistent platforms ENCFF650SYU bigBed narrowPeak replicated peaks ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF979AUE 5690359 ENCODE Processing Pipeline 75c6566c3c0f4c4d7ac4791b946f5640 https://www.encodeproject.org/files/ENCFF650SYU/@@download/ENCFF650SYU.bigBed mm10 released inconsistent platforms ENCFF002DQV fastq reads ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 856745428 Bing Ren, UCSD a972dc84455ba624623781fa29c6eeee SRA:SRR3651817 https://www.encodeproject.org/files/ENCFF002DQV/@@download/ENCFF002DQV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQJ/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF002DQW fastq reads ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 386879766 Bing Ren, UCSD 49095c73237e57a7a7b0623cd9e7a6d3 SRA:SRR3651814 https://www.encodeproject.org/files/ENCFF002DQW/@@download/ENCFF002DQW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQI/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF002DQX fastq reads ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 36 single-ended 698846559 Bing Ren, UCSD f2af955a37f492767b964f7bbd03c8fe SRA:SRR3651818 https://www.encodeproject.org/files/ENCFF002DQX/@@download/ENCFF002DQX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQJ/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF002DQZ fastq reads ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 3 36 single-ended 800480502 Bing Ren, UCSD 6027b56782a5f593e47f4696f9439b2c SRA:SRR3651815 https://www.encodeproject.org/files/ENCFF002DQZ/@@download/ENCFF002DQZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQI/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF002DRB fastq reads ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 36 single-ended 1055629725 Bing Ren, UCSD bfdf369f54331ec0de4f127c7fab533e SRA:SRR3651816 https://www.encodeproject.org/files/ENCFF002DRB/@@download/ENCFF002DRB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQI/ released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF171DWW bam alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002DQW, ENCFF002DQZ, ENCFF002DRB, ENCFF806TVZ 954880615 ENCODE Processing Pipeline 7a2237a4dd5bd4da77f7a1a6582c2f00 https://www.encodeproject.org/files/ENCFF171DWW/@@download/ENCFF171DWW.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF643BGC bam alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002DQV, ENCFF002DQX, ENCFF806TVZ 931143355 ENCODE Processing Pipeline b6aecc10bcb62d51b19fbabbe4a60969 https://www.encodeproject.org/files/ENCFF643BGC/@@download/ENCFF643BGC.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF938NXV bed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF271DZZ, ENCFF643BGC, ENCFF991ANF 197936 ENCODE Processing Pipeline 27cbb4df97832b95bed036aa9c292440 https://www.encodeproject.org/files/ENCFF938NXV/@@download/ENCFF938NXV.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF901DUA bed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF171DWW, ENCFF271DZZ, ENCFF991ANF 767462 ENCODE Processing Pipeline 8316db71f8ac15dffae4e27254c9eb87 https://www.encodeproject.org/files/ENCFF901DUA/@@download/ENCFF901DUA.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF314JLN bed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF171DWW, ENCFF271DZZ, ENCFF643BGC, ENCFF991ANF 384848 ENCODE Processing Pipeline 946f24f576aae16cf93a06a6caabe4d2 https://www.encodeproject.org/files/ENCFF314JLN/@@download/ENCFF314JLN.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF812CFI bigBed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF901DUA 1755689 ENCODE Processing Pipeline 45d57d478beb8dbda9117e2fc9eb9a4d https://www.encodeproject.org/files/ENCFF812CFI/@@download/ENCFF812CFI.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF919SAP bigBed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF938NXV 482079 ENCODE Processing Pipeline bcb0d4520ae6fed3b5c4df28e6b62f2f https://www.encodeproject.org/files/ENCFF919SAP/@@download/ENCFF919SAP.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF466WGX bigBed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF314JLN 975016 ENCODE Processing Pipeline 49169c0c9ff3b9ee1503a84e0d320ce2 https://www.encodeproject.org/files/ENCFF466WGX/@@download/ENCFF466WGX.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF331PSL bigWig signal p-value ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF271DZZ, ENCFF643BGC, ENCFF991ANF 544932549 ENCODE Processing Pipeline 8903ae44e15ecab828125f32afb8d821 https://www.encodeproject.org/files/ENCFF331PSL/@@download/ENCFF331PSL.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF097XLQ bigWig signal p-value ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF171DWW, ENCFF271DZZ, ENCFF991ANF 482207876 ENCODE Processing Pipeline 801456c7999776e05fe71b401879807d https://www.encodeproject.org/files/ENCFF097XLQ/@@download/ENCFF097XLQ.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF839JTG bigWig signal p-value ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF171DWW, ENCFF271DZZ, ENCFF643BGC, ENCFF991ANF 761943809 ENCODE Processing Pipeline 24435a4ba58a3add5f2c8135316c0a1e https://www.encodeproject.org/files/ENCFF839JTG/@@download/ENCFF839JTG.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF276OWQ bigWig fold change over control ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF271DZZ, ENCFF643BGC, ENCFF991ANF 501152417 ENCODE Processing Pipeline f008ee663531edaed1cdb7b4da971fce https://www.encodeproject.org/files/ENCFF276OWQ/@@download/ENCFF276OWQ.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF483WIB bigWig fold change over control ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF171DWW, ENCFF271DZZ, ENCFF991ANF 499011305 ENCODE Processing Pipeline ca7b4b7bfa2c88a1a6a40e3771d367a9 https://www.encodeproject.org/files/ENCFF483WIB/@@download/ENCFF483WIB.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF640DKA bed narrowPeak replicated peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF314JLN, ENCFF901DUA, ENCFF938NXV 163469 ENCODE Processing Pipeline 15a6fc2823753900b00c95e0f0db8f0a https://www.encodeproject.org/files/ENCFF640DKA/@@download/ENCFF640DKA.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF171ABA bigWig fold change over control ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF171DWW, ENCFF271DZZ, ENCFF643BGC, ENCFF991ANF 790611833 ENCODE Processing Pipeline f7ce9a72cc880fb340c68a1d1fac0648 https://www.encodeproject.org/files/ENCFF171ABA/@@download/ENCFF171ABA.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF079VTN bigBed narrowPeak replicated peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF640DKA 449557 ENCODE Processing Pipeline 699238d3517e06f21abb997165a9764c https://www.encodeproject.org/files/ENCFF079VTN/@@download/ENCFF079VTN.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF410NAJ bam unfiltered alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQV, ENCFF002DQX, ENCFF018NEO 1984433482 ENCODE Processing Pipeline 1d5a06e46af97cbc10697a7275f41bb0 https://www.encodeproject.org/files/ENCFF410NAJ/@@download/ENCFF410NAJ.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF430BBT bam unfiltered alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQW, ENCFF002DQZ, ENCFF002DRB, ENCFF018NEO 2759720355 ENCODE Processing Pipeline c28cbc11b89f751c97892c93303ab1dd https://www.encodeproject.org/files/ENCFF430BBT/@@download/ENCFF430BBT.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF783ZWB bam alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQV, ENCFF002DQX, ENCFF018NEO 930555762 ENCODE Processing Pipeline 7eb8075dd46b4ea7cbc70ad74a3ba605 https://www.encodeproject.org/files/ENCFF783ZWB/@@download/ENCFF783ZWB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF527KOB bam alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQW, ENCFF002DQZ, ENCFF002DRB, ENCFF018NEO 954316245 ENCODE Processing Pipeline a05b1e8268674285771d7112cc5ceaf6 https://www.encodeproject.org/files/ENCFF527KOB/@@download/ENCFF527KOB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF868MGO bed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF688CVA, ENCFF783ZWB, ENCFF945UFA 404795 ENCODE Processing Pipeline 69e63daf8e894eb7451557327c3a7c73 https://www.encodeproject.org/files/ENCFF868MGO/@@download/ENCFF868MGO.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF458FGF bed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF527KOB, ENCFF688CVA, ENCFF945UFA 774267 ENCODE Processing Pipeline 39eea314252d34efe05dc1a675a3176d https://www.encodeproject.org/files/ENCFF458FGF/@@download/ENCFF458FGF.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF872CNI bed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF527KOB, ENCFF688CVA, ENCFF783ZWB, ENCFF945UFA 355104 ENCODE Processing Pipeline 36268f5a3b785340cdceafac2d6eaab9 https://www.encodeproject.org/files/ENCFF872CNI/@@download/ENCFF872CNI.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF574MNC bigBed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF868MGO 843572 ENCODE Processing Pipeline febff47059b6207eece3a58c79d0f0d6 https://www.encodeproject.org/files/ENCFF574MNC/@@download/ENCFF574MNC.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF634VKT bigBed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF458FGF 1769094 ENCODE Processing Pipeline 88f68a32671483e9b6dc0a6feb9a92ca https://www.encodeproject.org/files/ENCFF634VKT/@@download/ENCFF634VKT.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF375CSX bigBed narrowPeak peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF872CNI 921209 ENCODE Processing Pipeline 5de9415564f267096cbb6aa1220f0561 https://www.encodeproject.org/files/ENCFF375CSX/@@download/ENCFF375CSX.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF552MMM bigWig signal p-value ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF688CVA, ENCFF783ZWB, ENCFF945UFA 530820179 ENCODE Processing Pipeline fd01aa187684b12898c87669788ec7fd https://www.encodeproject.org/files/ENCFF552MMM/@@download/ENCFF552MMM.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF038XAA bigWig signal p-value ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF527KOB, ENCFF688CVA, ENCFF945UFA 534541161 ENCODE Processing Pipeline b96da0b887b13208a64be995d4b9d0e7 https://www.encodeproject.org/files/ENCFF038XAA/@@download/ENCFF038XAA.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF620SEY bigWig signal p-value ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF527KOB, ENCFF688CVA, ENCFF783ZWB, ENCFF945UFA 767367527 ENCODE Processing Pipeline be0d2c22f9f1ad4c03b8f17030f55405 https://www.encodeproject.org/files/ENCFF620SEY/@@download/ENCFF620SEY.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF532XYR bigWig fold change over control ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF688CVA, ENCFF783ZWB, ENCFF945UFA 520579306 ENCODE Processing Pipeline 49aa1e8965e4348f40ba510cb17afe52 https://www.encodeproject.org/files/ENCFF532XYR/@@download/ENCFF532XYR.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF434ZXE bigWig fold change over control ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF527KOB, ENCFF688CVA, ENCFF945UFA 499670289 ENCODE Processing Pipeline 11c1d5394ae77826536314103ac251d4 https://www.encodeproject.org/files/ENCFF434ZXE/@@download/ENCFF434ZXE.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF492VCK bigWig fold change over control ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF527KOB, ENCFF688CVA, ENCFF783ZWB, ENCFF945UFA 794752882 ENCODE Processing Pipeline 694dd725e1811db6bfb7fee68321c439 https://www.encodeproject.org/files/ENCFF492VCK/@@download/ENCFF492VCK.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF419VVR bed narrowPeak replicated peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF458FGF, ENCFF868MGO, ENCFF872CNI 190248 ENCODE Processing Pipeline fcc9bf54bcbb5a8de67269e18cc24aa8 https://www.encodeproject.org/files/ENCFF419VVR/@@download/ENCFF419VVR.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF553RWE bigBed narrowPeak replicated peaks ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF419VVR 512378 ENCODE Processing Pipeline 06fcf13e3cc4d5f5a12ceef253497b37 https://www.encodeproject.org/files/ENCFF553RWE/@@download/ENCFF553RWE.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF002AER fastq reads ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1160913277 Bing Ren, UCSD b4e53a30bc2c7ec32989e865990c7c23 SRA:SRR3652073 https://www.encodeproject.org/files/ENCFF002AER/@@download/ENCFF002AER.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APX/ released mild to moderate bottlenecking, control low read depth, low read depth ENCFF002AEW fastq reads ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1461292947 Bing Ren, UCSD ed1c351c22708c92d62d55b881630f03 SRA:SRR3652074 https://www.encodeproject.org/files/ENCFF002AEW/@@download/ENCFF002AEW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQA/ released mild to moderate bottlenecking, control low read depth, inconsistent control read length, low read depth ENCFF587FSJ bam alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AEW, ENCFF806TVZ 1042356619 ENCODE Processing Pipeline 6c9e42cfdc41018a688753d93a5d2616 https://www.encodeproject.org/files/ENCFF587FSJ/@@download/ENCFF587FSJ.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF490OUY bam alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AER, ENCFF806TVZ 906160286 ENCODE Processing Pipeline 1ee3fc501778ccd896132e541f0c75a2 https://www.encodeproject.org/files/ENCFF490OUY/@@download/ENCFF490OUY.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF120VJA bed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF490OUY 1198642 ENCODE Processing Pipeline b358ec43cbb9efe9f19e3b4a9ba2a7ac https://www.encodeproject.org/files/ENCFF120VJA/@@download/ENCFF120VJA.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF380QWW bed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF587FSJ, ENCFF775YLK 906213 ENCODE Processing Pipeline 5a2edbc514aadbc7eced8f37164ea347 https://www.encodeproject.org/files/ENCFF380QWW/@@download/ENCFF380QWW.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF401IXZ bigBed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF120VJA 2801133 ENCODE Processing Pipeline 489170d93824d3481674783034153ee9 https://www.encodeproject.org/files/ENCFF401IXZ/@@download/ENCFF401IXZ.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF677EXZ bed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF490OUY, ENCFF587FSJ, ENCFF775YLK 1373765 ENCODE Processing Pipeline a9174e387dc84f6745d6569e66a2d7f8 https://www.encodeproject.org/files/ENCFF677EXZ/@@download/ENCFF677EXZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF535XWE bigBed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF380QWW 2254651 ENCODE Processing Pipeline bd94d5ae45d02fa6f9599a75bfba021b https://www.encodeproject.org/files/ENCFF535XWE/@@download/ENCFF535XWE.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF625COC bigBed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF677EXZ 3994918 ENCODE Processing Pipeline ce59f74d01d2c3d396c37de2621579ce https://www.encodeproject.org/files/ENCFF625COC/@@download/ENCFF625COC.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF466ZWE bigWig signal p-value ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF490OUY 265680374 ENCODE Processing Pipeline ed4488ee5d99d42aa9cca7c14109866a https://www.encodeproject.org/files/ENCFF466ZWE/@@download/ENCFF466ZWE.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF781DEZ bigWig signal p-value ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF587FSJ, ENCFF775YLK 329645641 ENCODE Processing Pipeline 3c4acacbd7edee6b7cf600501245abee https://www.encodeproject.org/files/ENCFF781DEZ/@@download/ENCFF781DEZ.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF678LLD bigWig signal p-value ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF490OUY, ENCFF587FSJ, ENCFF775YLK 709931319 ENCODE Processing Pipeline eac32721b63f433d5c283cbb63b9bd2d https://www.encodeproject.org/files/ENCFF678LLD/@@download/ENCFF678LLD.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF880LUA bigWig fold change over control ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF490OUY 303736493 ENCODE Processing Pipeline 7750e52d1ee0b22ffde6adac35cb0eb3 https://www.encodeproject.org/files/ENCFF880LUA/@@download/ENCFF880LUA.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF085WBX bigWig fold change over control ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF587FSJ, ENCFF775YLK 365666275 ENCODE Processing Pipeline 6e372d86df33f84b47395d374000527c https://www.encodeproject.org/files/ENCFF085WBX/@@download/ENCFF085WBX.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF677ESQ bigWig fold change over control ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF490OUY, ENCFF587FSJ, ENCFF775YLK 686063217 ENCODE Processing Pipeline c8fffcbbac5d5cd11aeafed9898d03ad https://www.encodeproject.org/files/ENCFF677ESQ/@@download/ENCFF677ESQ.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF141HDZ bed narrowPeak replicated peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF120VJA, ENCFF380QWW, ENCFF677EXZ 921000 ENCODE Processing Pipeline 9b0d2e0cc71fff4d7001df48cdd74f36 https://www.encodeproject.org/files/ENCFF141HDZ/@@download/ENCFF141HDZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF596ATW bigBed narrowPeak replicated peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF141HDZ 2256287 ENCODE Processing Pipeline 2844dccc3bb904bb81430fc5c6851bb2 https://www.encodeproject.org/files/ENCFF596ATW/@@download/ENCFF596ATW.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, low read depth ENCFF755NMZ bam unfiltered alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AER, ENCFF018NEO 1028906052 ENCODE Processing Pipeline ed139dabb6351deb5c13f46131772abd https://www.encodeproject.org/files/ENCFF755NMZ/@@download/ENCFF755NMZ.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF355RCN bam unfiltered alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEW, ENCFF018NEO 1224706223 ENCODE Processing Pipeline d0c8a3b681a5bf1652ac0211102bf661 https://www.encodeproject.org/files/ENCFF355RCN/@@download/ENCFF355RCN.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF346XYF bam alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AER, ENCFF018NEO 705773802 ENCODE Processing Pipeline 6658d6559b829a03e581aa23790fc750 https://www.encodeproject.org/files/ENCFF346XYF/@@download/ENCFF346XYF.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF467NEJ bam alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEW, ENCFF018NEO 805040191 ENCODE Processing Pipeline 7ec0342eee63069753038189d7414111 https://www.encodeproject.org/files/ENCFF467NEJ/@@download/ENCFF467NEJ.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF666KDS bed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF346XYF, ENCFF831XWF 1344930 ENCODE Processing Pipeline 93f5092843b2cd90d57ba41a045f4c24 https://www.encodeproject.org/files/ENCFF666KDS/@@download/ENCFF666KDS.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF164RCM bed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF467NEJ, ENCFF911DNW 891595 ENCODE Processing Pipeline fc0b3b55c6a27a686b9fc6ed62cb9c08 https://www.encodeproject.org/files/ENCFF164RCM/@@download/ENCFF164RCM.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF792DZH bed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF346XYF, ENCFF467NEJ, ENCFF831XWF, ENCFF911DNW 1347228 ENCODE Processing Pipeline ff833abdcf48ba70f0f141a3992027ea https://www.encodeproject.org/files/ENCFF792DZH/@@download/ENCFF792DZH.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF206HKI bigBed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF666KDS 3132663 ENCODE Processing Pipeline 1894e80ea579c7a21867a4f61738dbb4 https://www.encodeproject.org/files/ENCFF206HKI/@@download/ENCFF206HKI.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF274DSM bigBed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF164RCM 2222736 ENCODE Processing Pipeline b9b2eabb2497ce38ea8c152cc76e95aa https://www.encodeproject.org/files/ENCFF274DSM/@@download/ENCFF274DSM.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF617ZGM bigBed narrowPeak peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF792DZH 3929835 ENCODE Processing Pipeline ec7d911235eff870b7c798c15a34874d https://www.encodeproject.org/files/ENCFF617ZGM/@@download/ENCFF617ZGM.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF861BDB bigWig signal p-value ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF346XYF, ENCFF831XWF 333231335 ENCODE Processing Pipeline 95cea7aadd97840a04ee07f8f9e9dd03 https://www.encodeproject.org/files/ENCFF861BDB/@@download/ENCFF861BDB.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF492NXT bigWig signal p-value ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF467NEJ, ENCFF911DNW 377942496 ENCODE Processing Pipeline ac6973f3f3403792332f67d0a4efa0ba https://www.encodeproject.org/files/ENCFF492NXT/@@download/ENCFF492NXT.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF522IUO bigWig signal p-value ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF346XYF, ENCFF467NEJ, ENCFF831XWF, ENCFF911DNW 689310958 ENCODE Processing Pipeline 2ba3fb137fd66d446469276613b93327 https://www.encodeproject.org/files/ENCFF522IUO/@@download/ENCFF522IUO.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF388MTT bigWig fold change over control ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF346XYF, ENCFF831XWF 312544641 ENCODE Processing Pipeline 3235b872a86bcf606eacd3e8abe8a43a https://www.encodeproject.org/files/ENCFF388MTT/@@download/ENCFF388MTT.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF134GHJ bigWig fold change over control ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF467NEJ, ENCFF911DNW 355969335 ENCODE Processing Pipeline 66eb7b9f60568134777338f876cc09d3 https://www.encodeproject.org/files/ENCFF134GHJ/@@download/ENCFF134GHJ.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF251XZW bigWig fold change over control ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF346XYF, ENCFF467NEJ, ENCFF831XWF, ENCFF911DNW 658905844 ENCODE Processing Pipeline c6027177e1c0a453c98ff1d114a50928 https://www.encodeproject.org/files/ENCFF251XZW/@@download/ENCFF251XZW.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF354MWY bed narrowPeak replicated peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF164RCM, ENCFF666KDS, ENCFF792DZH 916866 ENCODE Processing Pipeline 9763f9bb35d7bb11ef663f694636c77c https://www.encodeproject.org/files/ENCFF354MWY/@@download/ENCFF354MWY.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF219PBU bigBed narrowPeak replicated peaks ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF354MWY 2254065 ENCODE Processing Pipeline 063eb027aee1e915a3dee4f3a3393161 https://www.encodeproject.org/files/ENCFF219PBU/@@download/ENCFF219PBU.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF002AMI fastq reads ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 641445303 Bing Ren, UCSD bd1f4953bfbc90cb0d2d262aafdb81a0 SRA:SRR3652163 https://www.encodeproject.org/files/ENCFF002AMI/@@download/ENCFF002AMI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQA/ released mixed read lengths, low read length, control low read depth, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF002AMJ fastq reads ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1161129585 Bing Ren, UCSD 88b450dcc2cdc67730ea2f1e7530bc4b SRA:SRR3652162 https://www.encodeproject.org/files/ENCFF002AMJ/@@download/ENCFF002AMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APX/ released mixed read lengths, low read length, control low read depth, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF292HGY bam alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMJ, ENCFF806TVZ 781468023 ENCODE Processing Pipeline 6cb3a73882fbb9fa3519e64f35a5a768 https://www.encodeproject.org/files/ENCFF292HGY/@@download/ENCFF292HGY.bam mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF226KSQ fastq reads ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 576017644 Bing Ren, UCSD fe006fec7cb99085d7bf3fe91a57e6a9 SRA:SRR3652164 https://www.encodeproject.org/files/ENCFF226KSQ/@@download/ENCFF226KSQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQA/ released mixed read lengths, low read length, control low read depth, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF386CPW bam alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMI, ENCFF226KSQ, ENCFF806TVZ 850646160 ENCODE Processing Pipeline 54c8f080d49510249aacdfe5998c027c https://www.encodeproject.org/files/ENCFF386CPW/@@download/ENCFF386CPW.bam mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF717DMA bed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF292HGY 517733 ENCODE Processing Pipeline f76baad50b43e235af0668d52c5f3822 https://www.encodeproject.org/files/ENCFF717DMA/@@download/ENCFF717DMA.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF767JOU bigBed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF626ACC 1727103 ENCODE Processing Pipeline ab76a12af82dddb8cd824e0f6743c374 https://www.encodeproject.org/files/ENCFF767JOU/@@download/ENCFF767JOU.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF372RQD bed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF386CPW, ENCFF775YLK 510828 ENCODE Processing Pipeline 9967126329c24cb2c74bea619386e261 https://www.encodeproject.org/files/ENCFF372RQD/@@download/ENCFF372RQD.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF626ACC bed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF292HGY, ENCFF386CPW, ENCFF775YLK 526178 ENCODE Processing Pipeline d656e8cbcd768a618aee290ee1e54ad8 https://www.encodeproject.org/files/ENCFF626ACC/@@download/ENCFF626ACC.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF645VJY bigBed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF372RQD 1712976 ENCODE Processing Pipeline 79bc1681683ccc76a4c232ffa61a2d38 https://www.encodeproject.org/files/ENCFF645VJY/@@download/ENCFF645VJY.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF801HGS bigWig signal p-value ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF386CPW, ENCFF775YLK 303152718 ENCODE Processing Pipeline 444fca06e0abadc879e6117b9a524141 https://www.encodeproject.org/files/ENCFF801HGS/@@download/ENCFF801HGS.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF321SBO bigWig signal p-value ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF292HGY, ENCFF386CPW, ENCFF775YLK 532366978 ENCODE Processing Pipeline 681986812e13205fcc7a02e499dc7fe0 https://www.encodeproject.org/files/ENCFF321SBO/@@download/ENCFF321SBO.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF644GEM bigBed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF717DMA 1734158 ENCODE Processing Pipeline a389e134d2b1b457c6d86f763202f2d4 https://www.encodeproject.org/files/ENCFF644GEM/@@download/ENCFF644GEM.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF358HYH bigWig signal p-value ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF292HGY 373443531 ENCODE Processing Pipeline 28a2287817152d981e56052b2d4c6fd1 https://www.encodeproject.org/files/ENCFF358HYH/@@download/ENCFF358HYH.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF481SIW bigWig fold change over control ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF386CPW, ENCFF775YLK 287500936 ENCODE Processing Pipeline 0dfe85e1e2fe813ff917b2564c3f13ef https://www.encodeproject.org/files/ENCFF481SIW/@@download/ENCFF481SIW.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF826GSS bed narrowPeak replicated peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF372RQD, ENCFF626ACC, ENCFF717DMA 576367 ENCODE Processing Pipeline 75bf3581b7367aca0cf696077951d59d https://www.encodeproject.org/files/ENCFF826GSS/@@download/ENCFF826GSS.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF353NHK bigWig fold change over control ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF292HGY 289673145 ENCODE Processing Pipeline df5b92605f2b1f914b48820c4f0808ef https://www.encodeproject.org/files/ENCFF353NHK/@@download/ENCFF353NHK.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF308OXB bigBed narrowPeak replicated peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF826GSS 1470603 ENCODE Processing Pipeline c27493295941631b7b8d9387eb2f619f https://www.encodeproject.org/files/ENCFF308OXB/@@download/ENCFF308OXB.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF686SHG bigWig fold change over control ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF292HGY, ENCFF386CPW, ENCFF775YLK 580380661 ENCODE Processing Pipeline 9929b6ca68fda5f94e4276ace1ff46fb https://www.encodeproject.org/files/ENCFF686SHG/@@download/ENCFF686SHG.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF402KTZ bam unfiltered alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMI, ENCFF018NEO, ENCFF226KSQ 1070426678 ENCODE Processing Pipeline e04bce181da3a4b9ed3c8f22a9e669b0 https://www.encodeproject.org/files/ENCFF402KTZ/@@download/ENCFF402KTZ.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF467NAP bam unfiltered alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMJ, ENCFF018NEO 1201853787 ENCODE Processing Pipeline 876298c78dc6bd99d3c05280f9f9c3bc https://www.encodeproject.org/files/ENCFF467NAP/@@download/ENCFF467NAP.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF663BAP bam alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMI, ENCFF018NEO, ENCFF226KSQ 664143228 ENCODE Processing Pipeline 4332cd75ff7c8add2180e6f8df992c2d https://www.encodeproject.org/files/ENCFF663BAP/@@download/ENCFF663BAP.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF439LXI bam alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMJ, ENCFF018NEO 781292175 ENCODE Processing Pipeline 5f737db3cb8697dd9f9db5b136599a8f https://www.encodeproject.org/files/ENCFF439LXI/@@download/ENCFF439LXI.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF364ZPC bed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439LXI, ENCFF831XWF 477244 ENCODE Processing Pipeline e2aa689ae95282518174aeab26c20f39 https://www.encodeproject.org/files/ENCFF364ZPC/@@download/ENCFF364ZPC.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF231QZZ bed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF663BAP, ENCFF911DNW 508890 ENCODE Processing Pipeline 7003997cebade9520520db11419320f4 https://www.encodeproject.org/files/ENCFF231QZZ/@@download/ENCFF231QZZ.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF483YBA bed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF439LXI, ENCFF663BAP, ENCFF831XWF, ENCFF911DNW 525755 ENCODE Processing Pipeline 90d6702ae539e555300d8bf48302745e https://www.encodeproject.org/files/ENCFF483YBA/@@download/ENCFF483YBA.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF179EQE bigBed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF364ZPC 1629363 ENCODE Processing Pipeline bc3dd03cbd896231aabbf6a20c53225d https://www.encodeproject.org/files/ENCFF179EQE/@@download/ENCFF179EQE.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF176RZY bigBed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF231QZZ 1702012 ENCODE Processing Pipeline 5ae1700eaf97a7f243a2dde0b1e97efc https://www.encodeproject.org/files/ENCFF176RZY/@@download/ENCFF176RZY.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF154MKC bigBed narrowPeak peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF483YBA 1728104 ENCODE Processing Pipeline c4845ff3115bbc6063a7e93973646d21 https://www.encodeproject.org/files/ENCFF154MKC/@@download/ENCFF154MKC.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF383LMI bigWig signal p-value ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439LXI, ENCFF831XWF 285133488 ENCODE Processing Pipeline b3b5ba2d8643aa917f1cd582c08d8768 https://www.encodeproject.org/files/ENCFF383LMI/@@download/ENCFF383LMI.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF959XIA bigWig signal p-value ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF663BAP, ENCFF911DNW 261597132 ENCODE Processing Pipeline 9a8bb0d60c772246be0bfb5ed35f0e76 https://www.encodeproject.org/files/ENCFF959XIA/@@download/ENCFF959XIA.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF538LVA bigWig signal p-value ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF439LXI, ENCFF663BAP, ENCFF831XWF, ENCFF911DNW 504418876 ENCODE Processing Pipeline c62e9dbdc36a309a19d8cc5c556920c8 https://www.encodeproject.org/files/ENCFF538LVA/@@download/ENCFF538LVA.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF755JAU bigWig fold change over control ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439LXI, ENCFF831XWF 295410619 ENCODE Processing Pipeline d32f50edffe99ccb056214130e04c696 https://www.encodeproject.org/files/ENCFF755JAU/@@download/ENCFF755JAU.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF151VUR bigWig fold change over control ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF663BAP, ENCFF911DNW 281152788 ENCODE Processing Pipeline 5bf6687c1e6ce11d33e3f476d4c3e8f2 https://www.encodeproject.org/files/ENCFF151VUR/@@download/ENCFF151VUR.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF751FCH bigWig fold change over control ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF439LXI, ENCFF663BAP, ENCFF831XWF, ENCFF911DNW 567031405 ENCODE Processing Pipeline 48458bcaa1ae8b97e8317d609aca5933 https://www.encodeproject.org/files/ENCFF751FCH/@@download/ENCFF751FCH.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF854JVF bed narrowPeak replicated peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF231QZZ, ENCFF364ZPC, ENCFF483YBA 572414 ENCODE Processing Pipeline 868979d0f2c70223d18ed34acff13045 https://www.encodeproject.org/files/ENCFF854JVF/@@download/ENCFF854JVF.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF871TPF bigBed narrowPeak replicated peaks ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF854JVF 1458622 ENCODE Processing Pipeline 9523057f403f20438f0ca62697b58e05 https://www.encodeproject.org/files/ENCFF871TPF/@@download/ENCFF871TPF.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF001ZTQ fastq reads ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1039261152 Bing Ren, UCSD 42328e382aeb45a13265fcb1a6697702 SRA:SRR3651981 https://www.encodeproject.org/files/ENCFF001ZTQ/@@download/ENCFF001ZTQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZTR fastq reads ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1094914347 Bing Ren, UCSD 186a510dd269fba176c8b99876cb96e1 SRA:SRR3651983 https://www.encodeproject.org/files/ENCFF001ZTR/@@download/ENCFF001ZTR.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF711AIN fastq reads ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 616026117 Bing Ren, UCSD 6e37b5a24ddaa4f17fb551d2b847a7bd SRA:SRR3651982 https://www.encodeproject.org/files/ENCFF711AIN/@@download/ENCFF711AIN.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF897QGK fastq reads ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 803285000 Bing Ren, UCSD c1885ed821e18d83ce586d490158f1bd SRA:SRR3651984 https://www.encodeproject.org/files/ENCFF897QGK/@@download/ENCFF897QGK.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF699TYA bam alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTQ, ENCFF711AIN, ENCFF806TVZ 1222251961 ENCODE Processing Pipeline 975def9e2b05a36aae99949af27cff5b https://www.encodeproject.org/files/ENCFF699TYA/@@download/ENCFF699TYA.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF177TKF bam alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTR, ENCFF806TVZ, ENCFF897QGK 1159053493 ENCODE Processing Pipeline a059d317a1b5dfdf2aea62e7aa13b3a8 https://www.encodeproject.org/files/ENCFF177TKF/@@download/ENCFF177TKF.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF409MIF bed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF177TKF, ENCFF656MYX, ENCFF844PWX 909915 ENCODE Processing Pipeline 1c27764f301d3a7eabe5976d404454f8 https://www.encodeproject.org/files/ENCFF409MIF/@@download/ENCFF409MIF.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF411IJU bed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF656MYX, ENCFF699TYA, ENCFF844PWX 1088596 ENCODE Processing Pipeline b19b2c13f3e7a5087934b2eb11dbdb40 https://www.encodeproject.org/files/ENCFF411IJU/@@download/ENCFF411IJU.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF071JVI bed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF177TKF, ENCFF656MYX, ENCFF699TYA, ENCFF844PWX 613402 ENCODE Processing Pipeline 7e81d8a00b19ce4330f02e32311b5bae https://www.encodeproject.org/files/ENCFF071JVI/@@download/ENCFF071JVI.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF136VBW bigBed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF411IJU 2371991 ENCODE Processing Pipeline 9ed7306cc4ac7c19bcf0a5269e8740d5 https://www.encodeproject.org/files/ENCFF136VBW/@@download/ENCFF136VBW.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF814DUP bigBed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF409MIF 2150785 ENCODE Processing Pipeline 3c06e71cb5fca905360e16e99ad67c6b https://www.encodeproject.org/files/ENCFF814DUP/@@download/ENCFF814DUP.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF380HZB bigBed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF071JVI 1627775 ENCODE Processing Pipeline 472e157da13b6062a11006b088e32f49 https://www.encodeproject.org/files/ENCFF380HZB/@@download/ENCFF380HZB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF297XGI bigWig signal p-value ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF656MYX, ENCFF699TYA, ENCFF844PWX 442884048 ENCODE Processing Pipeline e2366824ccfcbadd5adefdfb7f30de9a https://www.encodeproject.org/files/ENCFF297XGI/@@download/ENCFF297XGI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF487RBE bigWig signal p-value ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF177TKF, ENCFF656MYX, ENCFF699TYA, ENCFF844PWX 506016182 ENCODE Processing Pipeline ffe09286f6ae581a0e44b392d878df61 https://www.encodeproject.org/files/ENCFF487RBE/@@download/ENCFF487RBE.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF868MAL bigWig signal p-value ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF177TKF, ENCFF656MYX, ENCFF844PWX 434716016 ENCODE Processing Pipeline 7abe3585d739c879528df068db53a568 https://www.encodeproject.org/files/ENCFF868MAL/@@download/ENCFF868MAL.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF401KND bigWig fold change over control ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF656MYX, ENCFF699TYA, ENCFF844PWX 454128572 ENCODE Processing Pipeline c38d5eea64807bb08d2f9dc77b16b256 https://www.encodeproject.org/files/ENCFF401KND/@@download/ENCFF401KND.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF432XGK bed narrowPeak replicated peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF071JVI, ENCFF409MIF, ENCFF411IJU 511119 ENCODE Processing Pipeline 9b0b720af4f4019978e8954aa3a70d94 https://www.encodeproject.org/files/ENCFF432XGK/@@download/ENCFF432XGK.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF825UBS bigWig fold change over control ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF177TKF, ENCFF656MYX, ENCFF844PWX 420074327 ENCODE Processing Pipeline 4e0a071da082c77cbfdb5bbf2e6af531 https://www.encodeproject.org/files/ENCFF825UBS/@@download/ENCFF825UBS.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF424FNG bigWig fold change over control ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF177TKF, ENCFF656MYX, ENCFF699TYA, ENCFF844PWX 717897563 ENCODE Processing Pipeline 922dff027f59495a20a9f998d908db8c https://www.encodeproject.org/files/ENCFF424FNG/@@download/ENCFF424FNG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF424NQU bigBed narrowPeak replicated peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF432XGK 1194177 ENCODE Processing Pipeline d51b51b089575ceb6401884586fb206d https://www.encodeproject.org/files/ENCFF424NQU/@@download/ENCFF424NQU.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF673TTA bam unfiltered alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTQ, ENCFF018NEO, ENCFF711AIN 1904615539 ENCODE Processing Pipeline 14dc2ef39d94ea44d1baa4b4561f4f7d https://www.encodeproject.org/files/ENCFF673TTA/@@download/ENCFF673TTA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF329SYI bam unfiltered alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTR, ENCFF018NEO, ENCFF897QGK 2095977331 ENCODE Processing Pipeline 6f53c84c61d3adfeff865c153551effa https://www.encodeproject.org/files/ENCFF329SYI/@@download/ENCFF329SYI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF244SXN bam alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTQ, ENCFF018NEO, ENCFF711AIN 1090943209 ENCODE Processing Pipeline c5af3b2d2ed390798cbfe16f02c3361d https://www.encodeproject.org/files/ENCFF244SXN/@@download/ENCFF244SXN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF482QED bam alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTR, ENCFF018NEO, ENCFF897QGK 1003952472 ENCODE Processing Pipeline 9880b612e8a617e0ea268220a6c341ad https://www.encodeproject.org/files/ENCFF482QED/@@download/ENCFF482QED.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF679HRI bed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF244SXN, ENCFF627JLU 1061712 ENCODE Processing Pipeline 88bce31fa9fea11aacd13afadfcedac2 https://www.encodeproject.org/files/ENCFF679HRI/@@download/ENCFF679HRI.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF358BOO bed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF482QED, ENCFF627JLU 884803 ENCODE Processing Pipeline 1a41a9a71fca04f314a925ae7603b908 https://www.encodeproject.org/files/ENCFF358BOO/@@download/ENCFF358BOO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF687FKU bed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF244SXN, ENCFF482QED, ENCFF627JLU 602098 ENCODE Processing Pipeline 76cb4a0ed07bb69f512c7448183886c5 https://www.encodeproject.org/files/ENCFF687FKU/@@download/ENCFF687FKU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF631ETI bigBed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF679HRI 2317620 ENCODE Processing Pipeline 19c6ea95166391afbdb43c51561a844a https://www.encodeproject.org/files/ENCFF631ETI/@@download/ENCFF631ETI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF053WDP bigBed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF358BOO 2085411 ENCODE Processing Pipeline fca195af111e03089da8c9207d1d83b3 https://www.encodeproject.org/files/ENCFF053WDP/@@download/ENCFF053WDP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF971PFN bigBed narrowPeak peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF687FKU 1597743 ENCODE Processing Pipeline e1ecad6d40d8d3b2a50003b3e457e60d https://www.encodeproject.org/files/ENCFF971PFN/@@download/ENCFF971PFN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF029SGC bigWig signal p-value ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF244SXN, ENCFF627JLU 364322952 ENCODE Processing Pipeline 74628039fecd3ef5bebf298fa2974c04 https://www.encodeproject.org/files/ENCFF029SGC/@@download/ENCFF029SGC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF331BYM bigWig signal p-value ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF482QED, ENCFF627JLU 373218854 ENCODE Processing Pipeline 28c11f26a3db563d497ee36be39e46f8 https://www.encodeproject.org/files/ENCFF331BYM/@@download/ENCFF331BYM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF981QLG bigWig signal p-value ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF244SXN, ENCFF482QED, ENCFF627JLU 501958981 ENCODE Processing Pipeline c90b86f0b59b74c4d6bf80338f86b037 https://www.encodeproject.org/files/ENCFF981QLG/@@download/ENCFF981QLG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF973SCQ bigWig fold change over control ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF244SXN, ENCFF627JLU 446337350 ENCODE Processing Pipeline 5ecc1ec7edf13a37123df9513bb0175a https://www.encodeproject.org/files/ENCFF973SCQ/@@download/ENCFF973SCQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF594WDG bigWig fold change over control ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF482QED, ENCFF627JLU 416047269 ENCODE Processing Pipeline 78cfdf5184b3c9f73b1c3a5321b5f83a https://www.encodeproject.org/files/ENCFF594WDG/@@download/ENCFF594WDG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF352EVI bigWig fold change over control ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF244SXN, ENCFF482QED, ENCFF627JLU 709491095 ENCODE Processing Pipeline 23a53e338483d5ee12ce66f059e40893 https://www.encodeproject.org/files/ENCFF352EVI/@@download/ENCFF352EVI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF085LJL bigBed narrowPeak replicated peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF809JLW 1168198 ENCODE Processing Pipeline 59ed43b543095528024ff0340ad5acf5 https://www.encodeproject.org/files/ENCFF085LJL/@@download/ENCFF085LJL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF809JLW bed narrowPeak replicated peaks ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF358BOO, ENCFF679HRI, ENCFF687FKU 501114 ENCODE Processing Pipeline 4ea2316d1fbccbd809985ef8649336b8 https://www.encodeproject.org/files/ENCFF809JLW/@@download/ENCFF809JLW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF494VBT fastq reads ENCSR601HSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 1 50 single-ended 1849414864 Richard Myers, HAIB 798c8f8a3fd843de49ebee034ab78294 SRA:SRR5111856 https://www.encodeproject.org/files/ENCFF494VBT/@@download/ENCFF494VBT.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF040OST bam unfiltered alignments ENCSR601HSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 ENCFF018NEO, ENCFF494VBT 2017437642 ENCODE Processing Pipeline 749840e07c7b95a69ed7329ff8649118 https://www.encodeproject.org/files/ENCFF040OST/@@download/ENCFF040OST.bam mm10 released insufficient read depth for broad peaks control ENCFF574XMX bam alignments ENCSR601HSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF494VBT 1589262723 ENCODE Processing Pipeline 6584502fa3d3e4490920fa5d4cd5ac17 https://www.encodeproject.org/files/ENCFF574XMX/@@download/ENCFF574XMX.bam mm10 released insufficient read depth for broad peaks control ENCFF002BXX fastq reads ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 858874215 Bing Ren, UCSD f056a83456f3fe7c287523c707b5c468 SRA:SRR3651336 https://www.encodeproject.org/files/ENCFF002BXX/@@download/ENCFF002BXX.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF002BXZ fastq reads ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 660774959 Bing Ren, UCSD 3feebeabb073cf9a316c68060fefc697 SRA:SRR3651335 https://www.encodeproject.org/files/ENCFF002BXZ/@@download/ENCFF002BXZ.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF853VVE bam unfiltered alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXX, ENCFF806TVZ 1101828206 ENCODE Processing Pipeline 053d93da39db54e075a130cf149ff9cc https://www.encodeproject.org/files/ENCFF853VVE/@@download/ENCFF853VVE.bam mm10-minimal archived low read length, low read depth ENCFF190IUL bam unfiltered alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXZ, ENCFF806TVZ 847929239 ENCODE Processing Pipeline 0153135ba0e880b8c6aea841539e6210 https://www.encodeproject.org/files/ENCFF190IUL/@@download/ENCFF190IUL.bam mm10-minimal archived low read length, low read depth ENCFF527LXR bam alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXX, ENCFF806TVZ 655552812 ENCODE Processing Pipeline 4c35d36100a2a12d706e38cad595653c https://www.encodeproject.org/files/ENCFF527LXR/@@download/ENCFF527LXR.bam mm10-minimal archived low read length, low read depth ENCFF153BXF bam alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXZ, ENCFF806TVZ 504876617 ENCODE Processing Pipeline f7f646170476c9503db25a35cd5fa972 https://www.encodeproject.org/files/ENCFF153BXF/@@download/ENCFF153BXF.bam mm10-minimal archived low read length, low read depth ENCFF019UDH bam unfiltered alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXZ, ENCFF018NEO 849324718 ENCODE Processing Pipeline b930b138c4c2470144d3bfbb7f4f6d57 https://www.encodeproject.org/files/ENCFF019UDH/@@download/ENCFF019UDH.bam mm10 released low read length, low read depth ENCFF080OAF bam unfiltered alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXX, ENCFF018NEO 1103538980 ENCODE Processing Pipeline 68660f6586746818d7c3f30d83d3198f https://www.encodeproject.org/files/ENCFF080OAF/@@download/ENCFF080OAF.bam mm10 released low read length, low read depth ENCFF095LNY bam alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXZ, ENCFF018NEO 504692128 ENCODE Processing Pipeline bae61797039263bef6e7103071d94033 https://www.encodeproject.org/files/ENCFF095LNY/@@download/ENCFF095LNY.bam mm10 released low read length, low read depth ENCFF426BAZ bam alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXX, ENCFF018NEO 655299808 ENCODE Processing Pipeline f9b3fc3bb7033ba646074dfece6ecb06 https://www.encodeproject.org/files/ENCFF426BAZ/@@download/ENCFF426BAZ.bam mm10 released low read length, low read depth ENCFF129DZY fastq reads ENCSR164BWS ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 1 50 single-ended 1385876198 Richard Myers, HAIB 033289aa3dfad9170eac8cd9c6a2486b SRA:SRR5111205 https://www.encodeproject.org/files/ENCFF129DZY/@@download/ENCFF129DZY.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF981OXO bam unfiltered alignments ENCSR164BWS ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 ENCFF018NEO, ENCFF129DZY 1555170623 ENCODE Processing Pipeline 931dd468254a6e44fe49cc736b972578 https://www.encodeproject.org/files/ENCFF981OXO/@@download/ENCFF981OXO.bam mm10 released insufficient read depth for broad peaks control ENCFF887OHK bam alignments ENCSR164BWS ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF129DZY 1189821729 ENCODE Processing Pipeline d6db5c8566e69f1a226b8c3d4216e9f6 https://www.encodeproject.org/files/ENCFF887OHK/@@download/ENCFF887OHK.bam mm10 released insufficient read depth for broad peaks control ENCFF001OBU bigBed narrowPeak peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YKN 185097 Michael Snyder, Stanford 46f9c912101906909202edb97b70c583 https://www.encodeproject.org/files/ENCFF001OBU/@@download/ENCFF001OBU.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBV fastq reads ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 974772192 Michael Snyder, Stanford fb9d26d10984011d243061f2aa1c7977 https://www.encodeproject.org/files/ENCFF001OBV/@@download/ENCFF001OBV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBX fastq reads ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 866365282 Michael Snyder, Stanford 36f864e0da62ca9a96fa0a02848931fe https://www.encodeproject.org/files/ENCFF001OBX/@@download/ENCFF001OBX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBZ bigWig signal ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OCA, ENCFF001OCB 144669040 Michael Snyder, Stanford feb9b95b4e0625ea994292e4445a9d0e https://www.encodeproject.org/files/ENCFF001OBZ/@@download/ENCFF001OBZ.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OCA bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001OBX 412125828 Michael Snyder, Stanford e94ecb648c71ac5d551ae61d596d2df0 https://www.encodeproject.org/files/ENCFF001OCA/@@download/ENCFF001OCA.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OCB bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001OBV 446858667 Michael Snyder, Stanford d0649344c53cee8e67763a88b7afc07f https://www.encodeproject.org/files/ENCFF001OCB/@@download/ENCFF001OCB.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001YKN bed narrowPeak peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001OCA, ENCFF001OCB 46032 Michael Snyder, Stanford 20e531295c3506bbaa755e1493aee665 https://www.encodeproject.org/files/ENCFF001YKN/@@download/ENCFF001YKN.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF486ASX bam unfiltered alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBX, ENCFF018NEO 916947694 ENCODE Processing Pipeline d4372950b6590ea5516638864c49691d https://www.encodeproject.org/files/ENCFF486ASX/@@download/ENCFF486ASX.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF716EKL bam unfiltered alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBV, ENCFF018NEO 1027398569 ENCODE Processing Pipeline 5e79d88702a8a7c8b2c11d94faadb8ad https://www.encodeproject.org/files/ENCFF716EKL/@@download/ENCFF716EKL.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF052QVR bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBX, ENCFF018NEO 537013533 ENCODE Processing Pipeline e6cec2c0ec5ad60b9f3d78a19f536662 https://www.encodeproject.org/files/ENCFF052QVR/@@download/ENCFF052QVR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF494MWJ bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBV, ENCFF018NEO 564649400 ENCODE Processing Pipeline 8a67f3a6b9339f817436e9a9bb1ba11d https://www.encodeproject.org/files/ENCFF494MWJ/@@download/ENCFF494MWJ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF664PBT bigWig signal p-value ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF052QVR, ENCFF171OVT, ENCFF494MWJ 336360849 ENCODE Processing Pipeline 21e4e74866123a5a5de8047242719544 https://www.encodeproject.org/files/ENCFF664PBT/@@download/ENCFF664PBT.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF528KVN bigWig signal p-value ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF494MWJ 323797569 ENCODE Processing Pipeline e317bb568192b036737894b167e2f82d https://www.encodeproject.org/files/ENCFF528KVN/@@download/ENCFF528KVN.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF007XMO bigWig fold change over control ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF494MWJ 250418170 ENCODE Processing Pipeline 8090467d772a5b2e0fb367a34986a306 https://www.encodeproject.org/files/ENCFF007XMO/@@download/ENCFF007XMO.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF233FFG bigWig fold change over control ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF052QVR, ENCFF171OVT 246418067 ENCODE Processing Pipeline 3c6d1471eb1ab2e06933a2bdcfb48347 https://www.encodeproject.org/files/ENCFF233FFG/@@download/ENCFF233FFG.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF689AFL bigWig fold change over control ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF052QVR, ENCFF171OVT, ENCFF494MWJ 428844029 ENCODE Processing Pipeline b4b0500e74fe31492e0e021d3cf0a9da https://www.encodeproject.org/files/ENCFF689AFL/@@download/ENCFF689AFL.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF940LSC bigBed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF671KJV 12735100 ENCODE Processing Pipeline 70b0397ce7a4ae266bbb1a042731c346 https://www.encodeproject.org/files/ENCFF940LSC/@@download/ENCFF940LSC.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF671FLC bed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF052QVR, ENCFF171OVT, ENCFF494MWJ 6203506 ENCODE Processing Pipeline d918e1cef4a96bf5b5e50a01d41d56c0 https://www.encodeproject.org/files/ENCFF671FLC/@@download/ENCFF671FLC.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF279MMU bigWig signal p-value ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF052QVR, ENCFF171OVT 366335654 ENCODE Processing Pipeline 1c9d386dc7b5a9b361f189153424e0a6 https://www.encodeproject.org/files/ENCFF279MMU/@@download/ENCFF279MMU.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF671KJV bed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF494MWJ 5315252 ENCODE Processing Pipeline 89812e9d1b18f7c26bae1a0b98747228 https://www.encodeproject.org/files/ENCFF671KJV/@@download/ENCFF671KJV.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF601QJA bed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF052QVR, ENCFF171OVT 5577431 ENCODE Processing Pipeline 5c5eb696f4a3303aa0d300c07f9c4299 https://www.encodeproject.org/files/ENCFF601QJA/@@download/ENCFF601QJA.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF230ZKX bed narrowPeak conservative idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF601QJA, ENCFF671FLC, ENCFF671KJV 301149 ENCODE Processing Pipeline 44256dcbfc703efe28d037b6e3a80b61 https://www.encodeproject.org/files/ENCFF230ZKX/@@download/ENCFF230ZKX.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF839UAT bed narrowPeak optimal idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF601QJA, ENCFF671FLC, ENCFF671KJV 304759 ENCODE Processing Pipeline ff28ac624c17e2e88ceb4906fea87265 https://www.encodeproject.org/files/ENCFF839UAT/@@download/ENCFF839UAT.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF290ZQS bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF839UAT 693261 ENCODE Processing Pipeline e14b91d9613525deeaba2f3c4a2f106b https://www.encodeproject.org/files/ENCFF290ZQS/@@download/ENCFF290ZQS.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF967XCZ bigBed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF671FLC 12855889 ENCODE Processing Pipeline 18d37d231b88ff69222f718092c956d3 https://www.encodeproject.org/files/ENCFF967XCZ/@@download/ENCFF967XCZ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF178ACE bigBed narrowPeak peaks and background as input for IDR ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF601QJA 12665219 ENCODE Processing Pipeline 7ff6b05ee795a9a6030aeec16f61f2ac https://www.encodeproject.org/files/ENCFF178ACE/@@download/ENCFF178ACE.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF362AER bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF230ZKX 687400 ENCODE Processing Pipeline 4f7790dd363a3057cb84576cd8be08a0 https://www.encodeproject.org/files/ENCFF362AER/@@download/ENCFF362AER.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001KJV fastq reads ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 410781797 Bing Ren, UCSD d40aa2f0e537bd8593b8301f98f082da https://www.encodeproject.org/files/ENCFF001KJV/@@download/ENCFF001KJV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKE/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KJN bam alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KJV 286210125 Bing Ren, UCSD e357e73eeb7775b3b02bc6b3cb4894b1 https://www.encodeproject.org/files/ENCFF001KJN/@@download/ENCFF001KJN.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KJO bigBed broadPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XXO 405540 Bing Ren, UCSD 8e108e7081455a55c922bd5bcf11c3cd https://www.encodeproject.org/files/ENCFF001KJO/@@download/ENCFF001KJO.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KJP bam alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KJY 640375176 Bing Ren, UCSD 5a88b7f8d8519f872a793b55f5762b60 https://www.encodeproject.org/files/ENCFF001KJP/@@download/ENCFF001KJP.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KJQ bigWig signal ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KJN, ENCFF001KJP 43209018 Bing Ren, UCSD ea472de23bd509b3220562bf30295c16 https://www.encodeproject.org/files/ENCFF001KJQ/@@download/ENCFF001KJQ.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KJY fastq reads ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 807918810 Bing Ren, UCSD 9b975365848151a01ca7d1440e2522d8 https://www.encodeproject.org/files/ENCFF001KJY/@@download/ENCFF001KJY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKF/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001XXO bed broadPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KJN, ENCFF001KJP 268371 Bing Ren, UCSD b1869f62015cb7d009a69ae0be850863 https://www.encodeproject.org/files/ENCFF001XXO/@@download/ENCFF001XXO.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF400FJA bam unfiltered alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KJV, ENCFF018NEO 430562893 ENCODE Processing Pipeline d687df74923a0d00cba1f904a8b673dc https://www.encodeproject.org/files/ENCFF400FJA/@@download/ENCFF400FJA.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF509BDX bam unfiltered alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KJY, ENCFF018NEO 828864813 ENCODE Processing Pipeline c2e698b5fe4d7ce1ab145d18f588e91c https://www.encodeproject.org/files/ENCFF509BDX/@@download/ENCFF509BDX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF384DFL bam alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KJV, ENCFF018NEO 242949072 ENCODE Processing Pipeline 63ada9279241ae827b98324441d4b45d https://www.encodeproject.org/files/ENCFF384DFL/@@download/ENCFF384DFL.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF819KXC bam alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KJY, ENCFF018NEO 527092322 ENCODE Processing Pipeline c5b7f2404fa454d6fc3f1d5e0c830a5f https://www.encodeproject.org/files/ENCFF819KXC/@@download/ENCFF819KXC.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF499PIW bed narrowPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF384DFL, ENCFF396FNQ, ENCFF862XUW 740367 ENCODE Processing Pipeline 4a59fb30f0a438cb35c77ab35ce2ab85 https://www.encodeproject.org/files/ENCFF499PIW/@@download/ENCFF499PIW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF039JTO bed narrowPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF396FNQ, ENCFF819KXC, ENCFF862XUW 826846 ENCODE Processing Pipeline 9670ff8f4ac1be8bf8baf04e6a236692 https://www.encodeproject.org/files/ENCFF039JTO/@@download/ENCFF039JTO.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF095BNO bigBed narrowPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF039JTO 2402755 ENCODE Processing Pipeline 530225e5c5c956d752d6bd73933c3b58 https://www.encodeproject.org/files/ENCFF095BNO/@@download/ENCFF095BNO.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF520PLN bigBed narrowPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF603FOX 2341076 ENCODE Processing Pipeline a01390f90a241f4499fc35735a1ba0ff https://www.encodeproject.org/files/ENCFF520PLN/@@download/ENCFF520PLN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF602DIK bigBed narrowPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF499PIW 2253108 ENCODE Processing Pipeline 1e4ee6697fea9808cb7ca9fcb4eb200b https://www.encodeproject.org/files/ENCFF602DIK/@@download/ENCFF602DIK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF603FOX bed narrowPeak peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF384DFL, ENCFF396FNQ, ENCFF819KXC, ENCFF862XUW 818830 ENCODE Processing Pipeline 738d0cb35f654b71acdb8625060d6d50 https://www.encodeproject.org/files/ENCFF603FOX/@@download/ENCFF603FOX.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF400YQQ bigWig signal p-value ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF384DFL, ENCFF396FNQ, ENCFF862XUW 245663174 ENCODE Processing Pipeline 2204f7179c061502279c69989d8472f6 https://www.encodeproject.org/files/ENCFF400YQQ/@@download/ENCFF400YQQ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF699FCR bigWig signal p-value ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF396FNQ, ENCFF819KXC, ENCFF862XUW 276895193 ENCODE Processing Pipeline f0e6e858792c4bc5cb6c05dc83c02668 https://www.encodeproject.org/files/ENCFF699FCR/@@download/ENCFF699FCR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF269ACT bigWig signal p-value ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF384DFL, ENCFF396FNQ, ENCFF819KXC, ENCFF862XUW 358025054 ENCODE Processing Pipeline 4e88e39d7e977e7dd566a6758c932da8 https://www.encodeproject.org/files/ENCFF269ACT/@@download/ENCFF269ACT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF277PVZ bigWig fold change over control ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF384DFL, ENCFF396FNQ, ENCFF862XUW 102385369 ENCODE Processing Pipeline 74723c79aa7d2f343c114542a0349c71 https://www.encodeproject.org/files/ENCFF277PVZ/@@download/ENCFF277PVZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF113SOP bigWig fold change over control ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF396FNQ, ENCFF819KXC, ENCFF862XUW 194020771 ENCODE Processing Pipeline 7e2a530c3670ce6b04d36b1a095a691b https://www.encodeproject.org/files/ENCFF113SOP/@@download/ENCFF113SOP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF177YGH bigWig fold change over control ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF384DFL, ENCFF396FNQ, ENCFF819KXC, ENCFF862XUW 246712334 ENCODE Processing Pipeline d9e608276de857b4a8f1a633adddc0b6 https://www.encodeproject.org/files/ENCFF177YGH/@@download/ENCFF177YGH.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF608RHM bigBed narrowPeak replicated peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF372KRV 1919735 ENCODE Processing Pipeline 9acb92c1aa4fe43ec2f826789ecb4825 https://www.encodeproject.org/files/ENCFF608RHM/@@download/ENCFF608RHM.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF372KRV bed narrowPeak replicated peaks ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF039JTO, ENCFF499PIW, ENCFF603FOX 892893 ENCODE Processing Pipeline f9e50fa5f716ea14eac5168593f207f1 https://www.encodeproject.org/files/ENCFF372KRV/@@download/ENCFF372KRV.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KUD bam alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001KUJ 867653503 Bing Ren, UCSD 0e776a0adb237c015cf638eaa5c80e44 https://www.encodeproject.org/files/ENCFF001KUD/@@download/ENCFF001KUD.bam mm9 released low read length, inconsistent platforms, low read depth ENCFF001KUE bam alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KUK 775997632 Bing Ren, UCSD 4209e26f93c45892a4d615a1e9d4167a https://www.encodeproject.org/files/ENCFF001KUE/@@download/ENCFF001KUE.bam mm9 released low read length, inconsistent platforms, low read depth ENCFF001KUH bigWig signal ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001KUD, ENCFF001KUE 84592890 Bing Ren, UCSD 982b600e40e1be5be2cd037b06052dc1 https://www.encodeproject.org/files/ENCFF001KUH/@@download/ENCFF001KUH.bigWig mm9 released low read length, inconsistent platforms, low read depth ENCFF001KUJ fastq reads ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 776973938 Bing Ren, UCSD ad1f982aa0c1998f4ed64975d14d9914 https://www.encodeproject.org/files/ENCFF001KUJ/@@download/ENCFF001KUJ.fastq.gz Illumina Genome Analyzer II released low read length, inconsistent platforms, low read depth ENCFF001KUK fastq reads ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1023137427 Bing Ren, UCSD 85ad5289c137e27879044dd38bb7f8b3 https://www.encodeproject.org/files/ENCFF001KUK/@@download/ENCFF001KUK.fastq.gz Illumina HiSeq 2000 released low read length, inconsistent platforms, low read depth ENCFF666BUY bam unfiltered alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001KUJ, ENCFF806TVZ 943746055 J. Michael Cherry, Stanford 88a1545656d376f2f880ef4b1faf46fc https://www.encodeproject.org/files/ENCFF666BUY/@@download/ENCFF666BUY.bam mm10-minimal archived low read length, inconsistent platforms, low read depth ENCFF352EJS bam unfiltered alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001KUK, ENCFF806TVZ 1189574121 J. Michael Cherry, Stanford 0c0d780a0fa0edec25a68dcba0fe9623 https://www.encodeproject.org/files/ENCFF352EJS/@@download/ENCFF352EJS.bam mm10-minimal archived low read length, inconsistent platforms, low read depth ENCFF769FTV bam alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001KUJ, ENCFF018NEO 604840685 ENCODE Processing Pipeline 6c108306156cb1bb78d4de6fbce385f5 https://www.encodeproject.org/files/ENCFF769FTV/@@download/ENCFF769FTV.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF242QZL bam alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001KUK, ENCFF018NEO 796889804 ENCODE Processing Pipeline fca8527fac661682522c9c11f2dfe731 https://www.encodeproject.org/files/ENCFF242QZL/@@download/ENCFF242QZL.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF658BPB bam unfiltered alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001KUJ, ENCFF018NEO 945215463 ENCODE Processing Pipeline efee8655454a9c834298108ed9199a01 https://www.encodeproject.org/files/ENCFF658BPB/@@download/ENCFF658BPB.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF652FZI bam unfiltered alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001KUK, ENCFF018NEO 1191014916 ENCODE Processing Pipeline 04e5a9cf9dbb3ea2fa1012e84280b4ee https://www.encodeproject.org/files/ENCFF652FZI/@@download/ENCFF652FZI.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF268DID fastq reads ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 2302420468 Bing Ren, UCSD d5833c19b080e71c57ad9b6086123915 SRA:SRR3651354 https://www.encodeproject.org/files/ENCFF268DID/@@download/ENCFF268DID.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released inconsistent platforms ENCFF651UBB fastq reads ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 2358802760 Bing Ren, UCSD 1ffa86c20d3d39e4d670e1e564cc9779 SRA:SRR3651355 https://www.encodeproject.org/files/ENCFF651UBB/@@download/ENCFF651UBB.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released inconsistent platforms ENCFF333VED bam alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF268DID, ENCFF806TVZ 1338562727 ENCODE Processing Pipeline 44273555dbed0d876b53e14b8b7b83d7 https://www.encodeproject.org/files/ENCFF333VED/@@download/ENCFF333VED.bam mm10-minimal archived inconsistent platforms ENCFF552BTE bam alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF651UBB, ENCFF806TVZ 1380459760 ENCODE Processing Pipeline 616f6e0e2b875601cf3ce39fc2de288b https://www.encodeproject.org/files/ENCFF552BTE/@@download/ENCFF552BTE.bam mm10-minimal archived inconsistent platforms ENCFF856VCK bigBed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF722MTB 1877236 ENCODE Processing Pipeline 9bdede412b5b9f372d6f1caaa6f5bc6c https://www.encodeproject.org/files/ENCFF856VCK/@@download/ENCFF856VCK.bigBed mm10-minimal archived inconsistent platforms ENCFF257FKZ bed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF241ENQ, ENCFF333VED 562712 ENCODE Processing Pipeline 58f8d1edf36eaa71cdd718c69095f056 https://www.encodeproject.org/files/ENCFF257FKZ/@@download/ENCFF257FKZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF220LHW bed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF037XLR, ENCFF552BTE 564254 ENCODE Processing Pipeline 695420adc9f6a3e932a94d33853ecb7a https://www.encodeproject.org/files/ENCFF220LHW/@@download/ENCFF220LHW.bed.gz mm10-minimal archived inconsistent platforms ENCFF261SRE bigBed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF220LHW 1084971 ENCODE Processing Pipeline 93cb781d2d6b90a80a7b94f59843e144 https://www.encodeproject.org/files/ENCFF261SRE/@@download/ENCFF261SRE.bigBed mm10-minimal archived inconsistent platforms ENCFF722MTB bed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF333VED, ENCFF552BTE 857189 ENCODE Processing Pipeline 7b117e2eb5c03a91e9b6ba7559e705b0 https://www.encodeproject.org/files/ENCFF722MTB/@@download/ENCFF722MTB.bed.gz mm10-minimal archived inconsistent platforms ENCFF370ZFV bigWig signal p-value ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF241ENQ, ENCFF333VED 461635317 ENCODE Processing Pipeline 11ca8d3e83d7a1749eaef2263c8eb8dc https://www.encodeproject.org/files/ENCFF370ZFV/@@download/ENCFF370ZFV.bigWig mm10-minimal archived inconsistent platforms ENCFF983JBK bigBed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF257FKZ 1074263 ENCODE Processing Pipeline f9952fe701e9c0363d4e2f4445774c26 https://www.encodeproject.org/files/ENCFF983JBK/@@download/ENCFF983JBK.bigBed mm10-minimal archived inconsistent platforms ENCFF196LHC bigWig signal p-value ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF037XLR, ENCFF552BTE 587986914 ENCODE Processing Pipeline d15b4abc94998ee77e00ed828e006959 https://www.encodeproject.org/files/ENCFF196LHC/@@download/ENCFF196LHC.bigWig mm10-minimal archived inconsistent platforms ENCFF538HZA bigWig fold change over control ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF333VED, ENCFF552BTE 1108168579 ENCODE Processing Pipeline 8a109befee25fc30448700fb2ad4d87c https://www.encodeproject.org/files/ENCFF538HZA/@@download/ENCFF538HZA.bigWig mm10-minimal archived inconsistent platforms ENCFF040WLH bigWig signal p-value ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF333VED, ENCFF552BTE 867383008 ENCODE Processing Pipeline 549bcc62b11777df30767325384c4113 https://www.encodeproject.org/files/ENCFF040WLH/@@download/ENCFF040WLH.bigWig mm10-minimal archived inconsistent platforms ENCFF489FJR bigWig fold change over control ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF241ENQ, ENCFF333VED 545621449 ENCODE Processing Pipeline e70bea5117acf56c88ca236140d2740c https://www.encodeproject.org/files/ENCFF489FJR/@@download/ENCFF489FJR.bigWig mm10-minimal archived inconsistent platforms ENCFF285XNP bigBed narrowPeak replicated peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF146DNB 436650 ENCODE Processing Pipeline cbfe9a69990878b53002ca4cecda5c8d https://www.encodeproject.org/files/ENCFF285XNP/@@download/ENCFF285XNP.bigBed mm10-minimal archived inconsistent platforms ENCFF400WVS bigWig fold change over control ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF037XLR, ENCFF552BTE 570800169 ENCODE Processing Pipeline a45935c99e8806f47deaaaafae69a27a https://www.encodeproject.org/files/ENCFF400WVS/@@download/ENCFF400WVS.bigWig mm10-minimal archived inconsistent platforms ENCFF146DNB bed narrowPeak replicated peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF220LHW, ENCFF257FKZ, ENCFF722MTB 167896 ENCODE Processing Pipeline d7e803262d8b85966bdb295d1ff47a0f https://www.encodeproject.org/files/ENCFF146DNB/@@download/ENCFF146DNB.bed.gz mm10-minimal archived inconsistent platforms ENCFF294TVR bam unfiltered alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF268DID 2804519804 ENCODE Processing Pipeline a7c397c2c594023317d67619deb80abf https://www.encodeproject.org/files/ENCFF294TVR/@@download/ENCFF294TVR.bam mm10 released inconsistent platforms ENCFF336UHX bam unfiltered alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF651UBB 2873049570 ENCODE Processing Pipeline 4460b249bfd6d776414195c61e7698b8 https://www.encodeproject.org/files/ENCFF336UHX/@@download/ENCFF336UHX.bam mm10 released inconsistent platforms ENCFF502UOP bam alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF268DID 1337951321 ENCODE Processing Pipeline e84a11dde6201e2db1a9863e04eaf79c https://www.encodeproject.org/files/ENCFF502UOP/@@download/ENCFF502UOP.bam mm10 released inconsistent platforms ENCFF262FYW bam alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF651UBB 1379831805 ENCODE Processing Pipeline 38c86bc56094def27507829f5d1cfb42 https://www.encodeproject.org/files/ENCFF262FYW/@@download/ENCFF262FYW.bam mm10 released inconsistent platforms ENCFF342VZI bigBed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF946SRK 1214851 ENCODE Processing Pipeline 3bb56afe95ea0ad5cd15f4b6e39805b7 https://www.encodeproject.org/files/ENCFF342VZI/@@download/ENCFF342VZI.bigBed mm10 released inconsistent platforms ENCFF562KVL bed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF487AIV, ENCFF502UOP 359970 ENCODE Processing Pipeline 2f89767f09ab006069a303d0fe474c77 https://www.encodeproject.org/files/ENCFF562KVL/@@download/ENCFF562KVL.bed.gz mm10 released inconsistent platforms ENCFF946SRK bed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF262FYW, ENCFF642FOT 657721 ENCODE Processing Pipeline da40831331b34533f7703ef9ee750166 https://www.encodeproject.org/files/ENCFF946SRK/@@download/ENCFF946SRK.bed.gz mm10 released inconsistent platforms ENCFF388PGH bed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF262FYW, ENCFF487AIV, ENCFF502UOP, ENCFF642FOT 853471 ENCODE Processing Pipeline a08416bdabdff2f0a6d7a3d5041c2a36 https://www.encodeproject.org/files/ENCFF388PGH/@@download/ENCFF388PGH.bed.gz mm10 released inconsistent platforms ENCFF338CUI bigBed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF562KVL 753654 ENCODE Processing Pipeline 65b1d4de0d6f1ad71b072fa7021a148d https://www.encodeproject.org/files/ENCFF338CUI/@@download/ENCFF338CUI.bigBed mm10 released inconsistent platforms ENCFF718LCR bigBed narrowPeak peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF388PGH 1874973 ENCODE Processing Pipeline 0f959961977b198f0f196b00e74e66a0 https://www.encodeproject.org/files/ENCFF718LCR/@@download/ENCFF718LCR.bigBed mm10 released inconsistent platforms ENCFF651QDB bigWig signal p-value ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF487AIV, ENCFF502UOP 594741203 ENCODE Processing Pipeline 9d9b90b4259cf08a014418a3422f4f41 https://www.encodeproject.org/files/ENCFF651QDB/@@download/ENCFF651QDB.bigWig mm10 released inconsistent platforms ENCFF573KDE bigWig signal p-value ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF262FYW, ENCFF642FOT 540173376 ENCODE Processing Pipeline 7f8c26d10208d2bad0253951e16d030f https://www.encodeproject.org/files/ENCFF573KDE/@@download/ENCFF573KDE.bigWig mm10 released inconsistent platforms ENCFF890ZPU bigWig signal p-value ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF262FYW, ENCFF487AIV, ENCFF502UOP, ENCFF642FOT 1152107245 ENCODE Processing Pipeline f658b540eefce322dd47b8977fb3a720 https://www.encodeproject.org/files/ENCFF890ZPU/@@download/ENCFF890ZPU.bigWig mm10 released inconsistent platforms ENCFF611ZRT bigWig fold change over control ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF487AIV, ENCFF502UOP 601155492 ENCODE Processing Pipeline 485e9e693596823c91435d1b3054bdff https://www.encodeproject.org/files/ENCFF611ZRT/@@download/ENCFF611ZRT.bigWig mm10 released inconsistent platforms ENCFF286RIF bigWig fold change over control ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF262FYW, ENCFF642FOT 583425361 ENCODE Processing Pipeline a7369adb5fa51dfe8ad78b9d5ac0afdf https://www.encodeproject.org/files/ENCFF286RIF/@@download/ENCFF286RIF.bigWig mm10 released inconsistent platforms ENCFF921YZN bigWig fold change over control ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF262FYW, ENCFF487AIV, ENCFF502UOP, ENCFF642FOT 1189256112 ENCODE Processing Pipeline 5900fcb441818436ae00ec4991e88c5e https://www.encodeproject.org/files/ENCFF921YZN/@@download/ENCFF921YZN.bigWig mm10 released inconsistent platforms ENCFF951TUZ bed narrowPeak replicated peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF388PGH, ENCFF562KVL, ENCFF946SRK 210838 ENCODE Processing Pipeline 85febdc5bdeb63cf19b18fcce80e6f25 https://www.encodeproject.org/files/ENCFF951TUZ/@@download/ENCFF951TUZ.bed.gz mm10 released inconsistent platforms ENCFF620VYT bigBed narrowPeak replicated peaks ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF951TUZ 525328 ENCODE Processing Pipeline 8b219e97c34c5e7e27cfcfccfb9c338c https://www.encodeproject.org/files/ENCFF620VYT/@@download/ENCFF620VYT.bigBed mm10 released inconsistent platforms ENCFF002ALD fastq reads ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1644478931 Bing Ren, UCSD 5a82144c610f0ee9722f2aa0db2ab36d SRA:SRR3652581 https://www.encodeproject.org/files/ENCFF002ALD/@@download/ENCFF002ALD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth severe bottlenecking ENCFF002ALE fastq reads ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1697630740 Bing Ren, UCSD 34f9f4d0a5aa951a0b025ed676960636 SRA:SRR3652580 https://www.encodeproject.org/files/ENCFF002ALE/@@download/ENCFF002ALE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQF/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth severe bottlenecking ENCFF220MQQ bam alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALE, ENCFF806TVZ 720561137 ENCODE Processing Pipeline 8c60eee24607d0b64d84afc4398cec26 https://www.encodeproject.org/files/ENCFF220MQQ/@@download/ENCFF220MQQ.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF607APX bam alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALD, ENCFF806TVZ 835623765 ENCODE Processing Pipeline b791da279abcea7080ad125c56e917b7 https://www.encodeproject.org/files/ENCFF607APX/@@download/ENCFF607APX.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF549GNH bed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF607APX 851630 ENCODE Processing Pipeline 52f502ebd04f029b189624b96f4ae65e https://www.encodeproject.org/files/ENCFF549GNH/@@download/ENCFF549GNH.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF763IAO bigBed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF742EWE 2927445 ENCODE Processing Pipeline 161bd973316e583f060781947306fd72 https://www.encodeproject.org/files/ENCFF763IAO/@@download/ENCFF763IAO.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF742EWE bed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF220MQQ, ENCFF462HQE, ENCFF607APX, ENCFF868CEP 935140 ENCODE Processing Pipeline c6a21db4f5aad961a1c9972a537ec15e https://www.encodeproject.org/files/ENCFF742EWE/@@download/ENCFF742EWE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF877CRL bigBed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF947YMK 2410827 ENCODE Processing Pipeline 56c8c692b89c9ce317de0ec767253602 https://www.encodeproject.org/files/ENCFF877CRL/@@download/ENCFF877CRL.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF947YMK bed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF220MQQ, ENCFF868CEP 956753 ENCODE Processing Pipeline cd74a365caf3ebd9a81c49326edfe79e https://www.encodeproject.org/files/ENCFF947YMK/@@download/ENCFF947YMK.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF761NEK bigBed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF549GNH 2715793 ENCODE Processing Pipeline 8fd964aa8b111fa4832880d71a9b066b https://www.encodeproject.org/files/ENCFF761NEK/@@download/ENCFF761NEK.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF520ZNS bigWig signal p-value ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF220MQQ, ENCFF868CEP 361292468 ENCODE Processing Pipeline 6e9db81b322bdd70004bb6929910f5c2 https://www.encodeproject.org/files/ENCFF520ZNS/@@download/ENCFF520ZNS.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF690NUJ bigWig signal p-value ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF607APX 330010044 ENCODE Processing Pipeline b701445caa63a0376adf895673a2fa79 https://www.encodeproject.org/files/ENCFF690NUJ/@@download/ENCFF690NUJ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF805RFX bigWig signal p-value ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF220MQQ, ENCFF462HQE, ENCFF607APX, ENCFF868CEP 553820957 ENCODE Processing Pipeline 940075232ac971fcc1f9f1775512815e https://www.encodeproject.org/files/ENCFF805RFX/@@download/ENCFF805RFX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF045RVB bigWig fold change over control ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF462HQE, ENCFF607APX 352649307 ENCODE Processing Pipeline 7c0ad93cbc9f286cae8e74548d98d610 https://www.encodeproject.org/files/ENCFF045RVB/@@download/ENCFF045RVB.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF334RTA bigWig fold change over control ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF220MQQ, ENCFF868CEP 308926832 ENCODE Processing Pipeline ad9509283bbee1082f02338b36b74e62 https://www.encodeproject.org/files/ENCFF334RTA/@@download/ENCFF334RTA.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF914BSU bigWig fold change over control ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF220MQQ, ENCFF462HQE, ENCFF607APX, ENCFF868CEP 633388301 ENCODE Processing Pipeline 6d8fcfe8167e527dcb0cf9e7dbdd7766 https://www.encodeproject.org/files/ENCFF914BSU/@@download/ENCFF914BSU.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF135ZVG bigBed narrowPeak replicated peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF540CXW 2126710 ENCODE Processing Pipeline 02ddfcc0e6c2919e584c87779af66813 https://www.encodeproject.org/files/ENCFF135ZVG/@@download/ENCFF135ZVG.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF540CXW bed narrowPeak replicated peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF549GNH, ENCFF742EWE, ENCFF947YMK 880985 ENCODE Processing Pipeline e6cd94f67eb6506588a9befaee107413 https://www.encodeproject.org/files/ENCFF540CXW/@@download/ENCFF540CXW.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF730NKA bam unfiltered alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALD, ENCFF018NEO 1676427796 ENCODE Processing Pipeline 4f60202df15616321bcf99e8e99cc455 https://www.encodeproject.org/files/ENCFF730NKA/@@download/ENCFF730NKA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF611BBS bam unfiltered alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALE, ENCFF018NEO 1738027472 ENCODE Processing Pipeline 1a888cf6e4fb726f7f6dc9b66d7c5d96 https://www.encodeproject.org/files/ENCFF611BBS/@@download/ENCFF611BBS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF439TLQ bam alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALD, ENCFF018NEO 835494904 ENCODE Processing Pipeline e5d06c8cbe926e5f2c40cc9636a23a41 https://www.encodeproject.org/files/ENCFF439TLQ/@@download/ENCFF439TLQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF248HGQ bam alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALE, ENCFF018NEO 720403362 ENCODE Processing Pipeline 7b80982fe9bf1d28453a607af651a776 https://www.encodeproject.org/files/ENCFF248HGQ/@@download/ENCFF248HGQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF745MOH bed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439TLQ, ENCFF598OHC 853058 ENCODE Processing Pipeline f5a2e7cc70dd7bccb8ff96de58f723a5 https://www.encodeproject.org/files/ENCFF745MOH/@@download/ENCFF745MOH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF975EDA bed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248HGQ, ENCFF383CGK 938830 ENCODE Processing Pipeline 7858bfdacd201ee1f3ad422ccdef2482 https://www.encodeproject.org/files/ENCFF975EDA/@@download/ENCFF975EDA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF404JKW bed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248HGQ, ENCFF383CGK, ENCFF439TLQ, ENCFF598OHC 923824 ENCODE Processing Pipeline 2af3c7604987adafe0b892df4714620d https://www.encodeproject.org/files/ENCFF404JKW/@@download/ENCFF404JKW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF071EXD bigBed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF745MOH 2718860 ENCODE Processing Pipeline cdf5719e178221275ba5e1882363258c https://www.encodeproject.org/files/ENCFF071EXD/@@download/ENCFF071EXD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF632ZVY bigBed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF975EDA 2942317 ENCODE Processing Pipeline ac51314e3dca5b8d79d8a25aa3869297 https://www.encodeproject.org/files/ENCFF632ZVY/@@download/ENCFF632ZVY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF539XNI bigBed narrowPeak peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF404JKW 2902989 ENCODE Processing Pipeline fca6e5ad6556d8de3e73fa025697f67d https://www.encodeproject.org/files/ENCFF539XNI/@@download/ENCFF539XNI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF588NEW bigWig signal p-value ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439TLQ, ENCFF598OHC 379064500 ENCODE Processing Pipeline d17e9e351c736d1f5c693fd32f66df0f https://www.encodeproject.org/files/ENCFF588NEW/@@download/ENCFF588NEW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF254TGG bigWig signal p-value ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248HGQ, ENCFF383CGK 330733285 ENCODE Processing Pipeline 33844809b99ae8b2e676586caedcf4ca https://www.encodeproject.org/files/ENCFF254TGG/@@download/ENCFF254TGG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF249IJU bigWig signal p-value ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248HGQ, ENCFF383CGK, ENCFF439TLQ, ENCFF598OHC 694363659 ENCODE Processing Pipeline 40e1b703ba15b0c26acd9fdafb90ee4b https://www.encodeproject.org/files/ENCFF249IJU/@@download/ENCFF249IJU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF231QIP bigWig fold change over control ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439TLQ, ENCFF598OHC 356631323 ENCODE Processing Pipeline 1f42bf5096fa3a64c39521e77939d9ed https://www.encodeproject.org/files/ENCFF231QIP/@@download/ENCFF231QIP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF968MWR bigWig fold change over control ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248HGQ, ENCFF383CGK 308012835 ENCODE Processing Pipeline b2aa4d69e1ca36279e77b9d294a37fb5 https://www.encodeproject.org/files/ENCFF968MWR/@@download/ENCFF968MWR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF977AQW bigWig fold change over control ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248HGQ, ENCFF383CGK, ENCFF439TLQ, ENCFF598OHC 706045013 ENCODE Processing Pipeline 967e0f7e19a1b887748d2637e4a69029 https://www.encodeproject.org/files/ENCFF977AQW/@@download/ENCFF977AQW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF656AZE bed narrowPeak replicated peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF404JKW, ENCFF745MOH, ENCFF975EDA 918821 ENCODE Processing Pipeline b7d85edd1972d5b705d0fa50b5240556 https://www.encodeproject.org/files/ENCFF656AZE/@@download/ENCFF656AZE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF013DLJ bigBed narrowPeak replicated peaks ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF656AZE 2148090 ENCODE Processing Pipeline 34eeb23c86b82a95e6ad40a1253f6c50 https://www.encodeproject.org/files/ENCFF013DLJ/@@download/ENCFF013DLJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF002BXS fastq reads ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1063798968 Bing Ren, UCSD 4209094e52a96f863d86ad8a91ea7a27 SRA:SRR3652610 https://www.encodeproject.org/files/ENCFF002BXS/@@download/ENCFF002BXS.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF002BXU fastq reads ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1288111324 Bing Ren, UCSD 44ce988f587f5cef5fb30904766a20fd SRA:SRR3652611 https://www.encodeproject.org/files/ENCFF002BXU/@@download/ENCFF002BXU.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF190PMK bam unfiltered alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXS, ENCFF806TVZ 1392500507 ENCODE Processing Pipeline d2b3d3f5428aa40868ee24ec812819d3 https://www.encodeproject.org/files/ENCFF190PMK/@@download/ENCFF190PMK.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF315URK bam unfiltered alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXU, ENCFF806TVZ 1680863254 ENCODE Processing Pipeline 3b7b6dd940e174d4c472aadd77d8e311 https://www.encodeproject.org/files/ENCFF315URK/@@download/ENCFF315URK.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF532IQU bam alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXU, ENCFF806TVZ 1088088567 ENCODE Processing Pipeline ae72300bafdae6f85e936c2523c35127 https://www.encodeproject.org/files/ENCFF532IQU/@@download/ENCFF532IQU.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF540VMM bam alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXS, ENCFF806TVZ 893285593 ENCODE Processing Pipeline 3e4c4bc8b3105732bc79c696db7482f0 https://www.encodeproject.org/files/ENCFF540VMM/@@download/ENCFF540VMM.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF754FKJ bam unfiltered alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXS, ENCFF018NEO 1394633500 ENCODE Processing Pipeline bf792ec2e77878f2caac1b8bcb8688d6 https://www.encodeproject.org/files/ENCFF754FKJ/@@download/ENCFF754FKJ.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF357EQT bam unfiltered alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXU, ENCFF018NEO 1683443328 ENCODE Processing Pipeline 745d422e6b660fcd7781ed6579882c14 https://www.encodeproject.org/files/ENCFF357EQT/@@download/ENCFF357EQT.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF394IRO bam alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXS, ENCFF018NEO 892934821 ENCODE Processing Pipeline 79aa9dc4c18274f8de715673f2d4b860 https://www.encodeproject.org/files/ENCFF394IRO/@@download/ENCFF394IRO.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF742VJP bam alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXU, ENCFF018NEO 1087715413 ENCODE Processing Pipeline 1d2e40092925b75784634309f691bc2e https://www.encodeproject.org/files/ENCFF742VJP/@@download/ENCFF742VJP.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF002AEX fastq reads ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1184147005 Bing Ren, UCSD 5d906d9357796962e26a1acbedd582f3 SRA:SRR3651196 https://www.encodeproject.org/files/ENCFF002AEX/@@download/ENCFF002AEX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQF/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity ENCFF002AEY fastq reads ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2171071713 Bing Ren, UCSD d8ae6bc5b84aa372a4a268fc5bd74cc2 SRA:SRR3651195 https://www.encodeproject.org/files/ENCFF002AEY/@@download/ENCFF002AEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF315NEL bam alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AEY, ENCFF806TVZ 1322173618 ENCODE Processing Pipeline bbfdd88a1e2322d338564609d7a50ff7 https://www.encodeproject.org/files/ENCFF315NEL/@@download/ENCFF315NEL.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF046NDR bam alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AEX, ENCFF806TVZ 739476899 ENCODE Processing Pipeline 552af665e1e2e61149ed7452a20b6667 https://www.encodeproject.org/files/ENCFF046NDR/@@download/ENCFF046NDR.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF867LWP bed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF315NEL, ENCFF462HQE 1163402 ENCODE Processing Pipeline fd34ea9f2d9736bf976943c78d0a3eac https://www.encodeproject.org/files/ENCFF867LWP/@@download/ENCFF867LWP.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF428PQW bigBed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF219XXH 3257999 ENCODE Processing Pipeline 42e584ec0dca0368990551a0c139d9d4 https://www.encodeproject.org/files/ENCFF428PQW/@@download/ENCFF428PQW.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF219XXH bed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF046NDR, ENCFF868CEP 1379505 ENCODE Processing Pipeline a8f54e5e307642f76edb5a4ae7bb537b https://www.encodeproject.org/files/ENCFF219XXH/@@download/ENCFF219XXH.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF328HRG bed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF046NDR, ENCFF315NEL, ENCFF462HQE, ENCFF868CEP 1423239 ENCODE Processing Pipeline d56e8ea939be41b25edc93d564fad66b https://www.encodeproject.org/files/ENCFF328HRG/@@download/ENCFF328HRG.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF100CIX bigBed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF867LWP 2882043 ENCODE Processing Pipeline 65c7edb7fb06e77edb27629177c72e37 https://www.encodeproject.org/files/ENCFF100CIX/@@download/ENCFF100CIX.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF159XFK bigBed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF328HRG 3328709 ENCODE Processing Pipeline 1d4df8b455aec1539d58c3bfb6b16548 https://www.encodeproject.org/files/ENCFF159XFK/@@download/ENCFF159XFK.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF475CCY bigWig signal p-value ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF315NEL, ENCFF462HQE 424038208 ENCODE Processing Pipeline c497e4f5e249a0bd6408d20012b5fe5b https://www.encodeproject.org/files/ENCFF475CCY/@@download/ENCFF475CCY.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF863GIC bigWig signal p-value ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF046NDR, ENCFF868CEP 348416874 ENCODE Processing Pipeline d4dd49f57e6201652b75034e779c06f2 https://www.encodeproject.org/files/ENCFF863GIC/@@download/ENCFF863GIC.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF948QLR bigWig signal p-value ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF046NDR, ENCFF315NEL, ENCFF462HQE, ENCFF868CEP 698116809 ENCODE Processing Pipeline 18344b391aebacf0ca06ae3c67bbf79b https://www.encodeproject.org/files/ENCFF948QLR/@@download/ENCFF948QLR.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF498ELA bigWig fold change over control ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF315NEL, ENCFF462HQE 443273503 ENCODE Processing Pipeline 0532c5f08bbd0d9de5b510bcfefe82de https://www.encodeproject.org/files/ENCFF498ELA/@@download/ENCFF498ELA.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF928MXH bigWig fold change over control ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF046NDR, ENCFF868CEP 334415975 ENCODE Processing Pipeline e83f0dc1b47358a8e2c7493eb6292615 https://www.encodeproject.org/files/ENCFF928MXH/@@download/ENCFF928MXH.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF641PHX bigWig fold change over control ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF046NDR, ENCFF315NEL, ENCFF462HQE, ENCFF868CEP 788827139 ENCODE Processing Pipeline 5805e9bc042e779f2021ac8c4a0a8a8a https://www.encodeproject.org/files/ENCFF641PHX/@@download/ENCFF641PHX.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF751JLF bigBed narrowPeak replicated peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF636PPV 2221342 ENCODE Processing Pipeline d21f5273d0202681f137745347cfae2e https://www.encodeproject.org/files/ENCFF751JLF/@@download/ENCFF751JLF.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF636PPV bed narrowPeak replicated peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF219XXH, ENCFF328HRG, ENCFF867LWP 879928 ENCODE Processing Pipeline 6e2a28efc782aa99e6e0d9690f499790 https://www.encodeproject.org/files/ENCFF636PPV/@@download/ENCFF636PPV.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF059OXK bam unfiltered alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEX, ENCFF018NEO 1330035175 ENCODE Processing Pipeline 55b1f59189d83699a8e36c1a0d72d5d6 https://www.encodeproject.org/files/ENCFF059OXK/@@download/ENCFF059OXK.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF050SGU bam alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEX, ENCFF018NEO 739310347 ENCODE Processing Pipeline 6b5676e6f1abdc27dc977d177611c2f1 https://www.encodeproject.org/files/ENCFF050SGU/@@download/ENCFF050SGU.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF161YJP bam unfiltered alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEY, ENCFF018NEO 1851829106 ENCODE Processing Pipeline 9eefa2b75365d52a98fbf8074634fb15 https://www.encodeproject.org/files/ENCFF161YJP/@@download/ENCFF161YJP.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF219IYF bam alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEY, ENCFF018NEO 1020682272 ENCODE Processing Pipeline 04c929866d174f2925b6bbe6bc28d364 https://www.encodeproject.org/files/ENCFF219IYF/@@download/ENCFF219IYF.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF607KDG bed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF219IYF, ENCFF598OHC 1114816 ENCODE Processing Pipeline 6d8cf70129bce4e76bb23686d387b895 https://www.encodeproject.org/files/ENCFF607KDG/@@download/ENCFF607KDG.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF086HRP bed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF050SGU, ENCFF383CGK 1330544 ENCODE Processing Pipeline fa5af0e693b2241e1d0237cf0dc21eb0 https://www.encodeproject.org/files/ENCFF086HRP/@@download/ENCFF086HRP.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF564SUJ bed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF050SGU, ENCFF219IYF, ENCFF383CGK, ENCFF598OHC 1412521 ENCODE Processing Pipeline c82ec3bba171a488b25392a26218420e https://www.encodeproject.org/files/ENCFF564SUJ/@@download/ENCFF564SUJ.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF262FXG bigBed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF607KDG 2796671 ENCODE Processing Pipeline 17a2badeb4fa84d68b2cdc0451b3867b https://www.encodeproject.org/files/ENCFF262FXG/@@download/ENCFF262FXG.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF726QJL bigBed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF086HRP 3174145 ENCODE Processing Pipeline fceacebdeac5ed15a3d23b90699b3e4b https://www.encodeproject.org/files/ENCFF726QJL/@@download/ENCFF726QJL.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF557OMA bigBed narrowPeak peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF564SUJ 3332204 ENCODE Processing Pipeline 9210a166549feb225cc45d403b91a8aa https://www.encodeproject.org/files/ENCFF557OMA/@@download/ENCFF557OMA.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF326LYM bigWig signal p-value ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF050SGU, ENCFF383CGK 306753850 ENCODE Processing Pipeline 533c2ed22b0a3656a8c674aa52f37145 https://www.encodeproject.org/files/ENCFF326LYM/@@download/ENCFF326LYM.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF654PIW bigWig signal p-value ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF219IYF, ENCFF598OHC 338837339 ENCODE Processing Pipeline 4b6f9bae674968876addf6bba7a3b3d2 https://www.encodeproject.org/files/ENCFF654PIW/@@download/ENCFF654PIW.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF532WVN bigWig signal p-value ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF050SGU, ENCFF219IYF, ENCFF383CGK, ENCFF598OHC 609257456 ENCODE Processing Pipeline 2d599dd22e3c7fd189ab0f578f279b6e https://www.encodeproject.org/files/ENCFF532WVN/@@download/ENCFF532WVN.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF569BDG bigWig fold change over control ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF219IYF, ENCFF598OHC 436234315 ENCODE Processing Pipeline 210bace01ec3b009100df085b6cf07eb https://www.encodeproject.org/files/ENCFF569BDG/@@download/ENCFF569BDG.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF226WGX bigWig fold change over control ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF050SGU, ENCFF383CGK 327864248 ENCODE Processing Pipeline 1848d818b0bb78212d6ecdfa7824b825 https://www.encodeproject.org/files/ENCFF226WGX/@@download/ENCFF226WGX.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF538TEQ bigWig fold change over control ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF050SGU, ENCFF219IYF, ENCFF383CGK, ENCFF598OHC 798535060 ENCODE Processing Pipeline 70a917285525de332413f9d40ef04af6 https://www.encodeproject.org/files/ENCFF538TEQ/@@download/ENCFF538TEQ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF354CRO bed narrowPeak replicated peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF086HRP, ENCFF564SUJ, ENCFF607KDG 866591 ENCODE Processing Pipeline 88917ac5d61a39dba8775b775772694c https://www.encodeproject.org/files/ENCFF354CRO/@@download/ENCFF354CRO.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF957VXH bigBed narrowPeak replicated peaks ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF354CRO 2160177 ENCODE Processing Pipeline 159dca64e27ada02cfd5f7eb6bbf83e7 https://www.encodeproject.org/files/ENCFF957VXH/@@download/ENCFF957VXH.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001MUX bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MVC 805938098 Ross Hardison, PennState 9253385fc8d686a273cd1aa877b8429f https://www.encodeproject.org/files/ENCFF001MUX/@@download/ENCFF001MUX.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MUY bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 ENCFF001MVJ 2932779832 Ross Hardison, PennState e47d76948c37098ee39eed00b3c40a9c https://www.encodeproject.org/files/ENCFF001MUY/@@download/ENCFF001MUY.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MUZ bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE ENCFF001YGN 313357 Ross Hardison, PennState d456065861f660e30d0bfc519b6c5927 https://www.encodeproject.org/files/ENCFF001MUZ/@@download/ENCFF001MUZ.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVA bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 ENCFF001MVL 6479054838 Ross Hardison, PennState 1f981b0244270831753544d61a8ace8c https://www.encodeproject.org/files/ENCFF001MVA/@@download/ENCFF001MVA.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVB bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 ENCFF001MVN 7106001756 Ross Hardison, PennState 06887208e2905733ded0a434e4b60eda https://www.encodeproject.org/files/ENCFF001MVB/@@download/ENCFF001MVB.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVC fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 629059358 Ross Hardison, PennState 9101d7b287d08b91fe7a2914cc9246da https://www.encodeproject.org/files/ENCFF001MVC/@@download/ENCFF001MVC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MUT/ released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVD bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YGO 208590 Ross Hardison, PennState 93990fd96770414207301adb7c1bc2e7 https://www.encodeproject.org/files/ENCFF001MVD/@@download/ENCFF001MVD.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVE bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 ENCFF001YGP 260874 Ross Hardison, PennState f504acf51ddcfdb23f20379bb98da7c5 https://www.encodeproject.org/files/ENCFF001MVE/@@download/ENCFF001MVE.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVF bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 ENCFF001YGQ 216085 Ross Hardison, PennState cd8298a803bfa75bc71be4b6fe93bc2b https://www.encodeproject.org/files/ENCFF001MVF/@@download/ENCFF001MVF.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVG bigBed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 ENCFF001YGR 409835 Ross Hardison, PennState 047d3b4e4b69117bb06b80c40e198f9e https://www.encodeproject.org/files/ENCFF001MVG/@@download/ENCFF001MVG.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVH bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 3169443045 Ross Hardison, PennState 934178034a803071c2c3134e12d38e7c https://www.encodeproject.org/files/ENCFF001MVH/@@download/ENCFF001MVH.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MVI bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 5437765102 Ross Hardison, PennState 0185ebf148aef9a8137c1d2a2c04561c https://www.encodeproject.org/files/ENCFF001MVI/@@download/ENCFF001MVI.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MVJ fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 45 single-ended 2422864865 Ross Hardison, PennState 66c20c812b50f1bdca3489b48df92c50 https://www.encodeproject.org/files/ENCFF001MVJ/@@download/ENCFF001MVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF001MVK bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 5919870621 Ross Hardison, PennState 83d5a198c4b830d225f8ab24530df4c3 https://www.encodeproject.org/files/ENCFF001MVK/@@download/ENCFF001MVK.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MVL fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 55 single-ended 5721553125 Ross Hardison, PennState 90922c1d48a6749802f792f35a42a2b3 https://www.encodeproject.org/files/ENCFF001MVL/@@download/ENCFF001MVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MVM bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 4363082560 Ross Hardison, PennState 5c874ad97f06bd67fa5ae4fd8c3ffcf4 https://www.encodeproject.org/files/ENCFF001MVM/@@download/ENCFF001MVM.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MVN fastq reads ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 48 single-ended 6252887485 Ross Hardison, PennState f3cf3f69dab547acfe0b4632f1b207d6 https://www.encodeproject.org/files/ENCFF001MVN/@@download/ENCFF001MVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF001MVO bigWig signal ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 6722126439 Ross Hardison, PennState 5bf91408e36dd4b4547eb2ed19e1889a https://www.encodeproject.org/files/ENCFF001MVO/@@download/ENCFF001MVO.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YGN bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 181162 Ross Hardison, PennState 3794744ceb668ba1cb24bbddbeb5f818 https://www.encodeproject.org/files/ENCFF001YGN/@@download/ENCFF001YGN.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YGO bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 81623 Ross Hardison, PennState 8c2a71b0c3084177cb5bcc25eecc6ee1 https://www.encodeproject.org/files/ENCFF001YGO/@@download/ENCFF001YGO.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YGP bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 1 129645 Ross Hardison, PennState 5f9741f3d40d0664d8940cd29aae327f https://www.encodeproject.org/files/ENCFF001YGP/@@download/ENCFF001YGP.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YGQ bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 1 110476 Ross Hardison, PennState e41644f7b384f22f21e67cf2c09d055b https://www.encodeproject.org/files/ENCFF001YGQ/@@download/ENCFF001YGQ.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YGR bed broadPeak peaks ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 1 239107 Ross Hardison, PennState 76918c95111ba9a7c4b1dad35727844e https://www.encodeproject.org/files/ENCFF001YGR/@@download/ENCFF001YGR.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF680RVV bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MVC, ENCFF018NEO 851333234 ENCODE Processing Pipeline a069d6ee2569286de724e35f003a8238 https://www.encodeproject.org/files/ENCFF680RVV/@@download/ENCFF680RVV.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF416IJR bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MVC, ENCFF018NEO 579927219 ENCODE Processing Pipeline dd598c0a8d07b837b43a84d7c81be28c https://www.encodeproject.org/files/ENCFF416IJR/@@download/ENCFF416IJR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF513GMN bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MVL, ENCFF018NEO 5670729288 ENCODE Processing Pipeline e07511cbb722ae98ca932c104ac64ec6 https://www.encodeproject.org/files/ENCFF513GMN/@@download/ENCFF513GMN.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF077PCC bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 41 ENCFF001MVJ, ENCFF018NEO 2922757690 ENCODE Processing Pipeline f7f962247d44ab23cb465e32256b7136 https://www.encodeproject.org/files/ENCFF077PCC/@@download/ENCFF077PCC.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF047FOQ bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 41 ENCFF001MVJ, ENCFF018NEO 1941541392 ENCODE Processing Pipeline 3059e509426fdc04e2e90d44ae298bc2 https://www.encodeproject.org/files/ENCFF047FOQ/@@download/ENCFF047FOQ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF870QNB bam unfiltered alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 41 ENCFF001MVN, ENCFF018NEO 6850427844 ENCODE Processing Pipeline 5aec4ac7204447db960c5fae11eb88cd https://www.encodeproject.org/files/ENCFF870QNB/@@download/ENCFF870QNB.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF913KOC bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MVL, ENCFF018NEO 3894215553 ENCODE Processing Pipeline af206cf0e578c71edd358502a8b398b1 https://www.encodeproject.org/files/ENCFF913KOC/@@download/ENCFF913KOC.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF093LQI bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 41 ENCFF001MVN, ENCFF018NEO 4643217061 ENCODE Processing Pipeline 69726547b3287bab8d257533ede79f3e https://www.encodeproject.org/files/ENCFF093LQI/@@download/ENCFF093LQI.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF988DEI fastq reads ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1309762693 Bing Ren, UCSD 9ecba993e393da388ea0dbbc8eb36756 SRA:SRR3652338 https://www.encodeproject.org/files/ENCFF988DEI/@@download/ENCFF988DEI.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released mild to moderate bottlenecking ENCFF813PWP fastq reads ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1437650116 Bing Ren, UCSD 2b86122577bc95cf88ecced03f7a81e8 SRA:SRR3652337 https://www.encodeproject.org/files/ENCFF813PWP/@@download/ENCFF813PWP.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released mild to moderate bottlenecking ENCFF938SVA bam alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF988DEI 1173590624 ENCODE Processing Pipeline 843122d85bb3114c5cace87b353ca46a https://www.encodeproject.org/files/ENCFF938SVA/@@download/ENCFF938SVA.bam mm10-minimal archived mild to moderate bottlenecking ENCFF621WXP bam alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF813PWP 1299562155 ENCODE Processing Pipeline 730acf705beea1b1b66f21a5dff4c6d4 https://www.encodeproject.org/files/ENCFF621WXP/@@download/ENCFF621WXP.bam mm10-minimal archived mild to moderate bottlenecking ENCFF833QNB bed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF938SVA 810104 ENCODE Processing Pipeline cc91d6e59a47a7159408ddce7dc52084 https://www.encodeproject.org/files/ENCFF833QNB/@@download/ENCFF833QNB.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF635PEM bed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF621WXP, ENCFF938SVA 929190 ENCODE Processing Pipeline 0932248200742b03c961421f80bf486b https://www.encodeproject.org/files/ENCFF635PEM/@@download/ENCFF635PEM.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF912JYB bigBed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF837ANM 2615607 ENCODE Processing Pipeline 330e05d04a153ad5c6e063b87b7351fa https://www.encodeproject.org/files/ENCFF912JYB/@@download/ENCFF912JYB.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF214CTM bigBed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF833QNB 2544507 ENCODE Processing Pipeline 5dc75a5f0f53d8b3356bf92c5ac414fe https://www.encodeproject.org/files/ENCFF214CTM/@@download/ENCFF214CTM.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF144RTK bigWig signal p-value ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF938SVA 486619610 ENCODE Processing Pipeline e344c308457fb1168a9418ef5445e340 https://www.encodeproject.org/files/ENCFF144RTK/@@download/ENCFF144RTK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF837ANM bed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF621WXP 839956 ENCODE Processing Pipeline 77629915df95ecb91da4f77ba31d480a https://www.encodeproject.org/files/ENCFF837ANM/@@download/ENCFF837ANM.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF254JED bigBed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF635PEM 2830104 ENCODE Processing Pipeline 79991ec649fdb60a7bed8f977b6169e2 https://www.encodeproject.org/files/ENCFF254JED/@@download/ENCFF254JED.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF384JUK bigWig signal p-value ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF621WXP 580902906 ENCODE Processing Pipeline d49bbfa4c5ddbb34299d52e2aeaeca8d https://www.encodeproject.org/files/ENCFF384JUK/@@download/ENCFF384JUK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF780IRE bigWig fold change over control ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF581EXC, ENCFF938SVA 567554954 ENCODE Processing Pipeline ebfe1420efe9c149239514f22edd55b2 https://www.encodeproject.org/files/ENCFF780IRE/@@download/ENCFF780IRE.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF336YNP bigWig signal p-value ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF621WXP, ENCFF938SVA 845723304 ENCODE Processing Pipeline 8d63fc96a153fa22c32b43a4df3aa800 https://www.encodeproject.org/files/ENCFF336YNP/@@download/ENCFF336YNP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF076BBL bigWig fold change over control ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF621WXP 585969552 ENCODE Processing Pipeline 211358c50e4bd168314c1489d53a7e3a https://www.encodeproject.org/files/ENCFF076BBL/@@download/ENCFF076BBL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF581WDY bigWig fold change over control ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF581EXC, ENCFF621WXP, ENCFF938SVA 1096339223 ENCODE Processing Pipeline 5badbb90c5d805c0d764d1b90049b79a https://www.encodeproject.org/files/ENCFF581WDY/@@download/ENCFF581WDY.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF132YUK bed narrowPeak replicated peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF635PEM, ENCFF833QNB, ENCFF837ANM 943074 ENCODE Processing Pipeline bfb14054451223b315b42acc4eefe7f8 https://www.encodeproject.org/files/ENCFF132YUK/@@download/ENCFF132YUK.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF760YCK bigBed narrowPeak replicated peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF132YUK 2155257 ENCODE Processing Pipeline 928b8509c863efe33e0e51d5f87100e3 https://www.encodeproject.org/files/ENCFF760YCK/@@download/ENCFF760YCK.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF650GUY bam unfiltered alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF988DEI 1664411933 ENCODE Processing Pipeline 11423b25abb09b1d860955b70e4b9b7d https://www.encodeproject.org/files/ENCFF650GUY/@@download/ENCFF650GUY.bam mm10 released mild to moderate bottlenecking ENCFF867PSN bam unfiltered alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF813PWP 1811834820 ENCODE Processing Pipeline fad152e8082227a3e1ae931267fd940e https://www.encodeproject.org/files/ENCFF867PSN/@@download/ENCFF867PSN.bam mm10 released mild to moderate bottlenecking ENCFF142GHN bam alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF988DEI 1173383469 ENCODE Processing Pipeline 6e6a23faaefc3209a6823a34a084ac69 https://www.encodeproject.org/files/ENCFF142GHN/@@download/ENCFF142GHN.bam mm10 released mild to moderate bottlenecking ENCFF617IEA bam alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF813PWP 1299349355 ENCODE Processing Pipeline d4bbcdcad236ac95333b4fb653793b4d https://www.encodeproject.org/files/ENCFF617IEA/@@download/ENCFF617IEA.bam mm10 released mild to moderate bottlenecking ENCFF794BUX bed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF142GHN, ENCFF652BTE 810495 ENCODE Processing Pipeline 9d65dfddb62d73c74aada87e0f8247d6 https://www.encodeproject.org/files/ENCFF794BUX/@@download/ENCFF794BUX.bed.gz mm10 released mild to moderate bottlenecking ENCFF985FIT bed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF617IEA 843451 ENCODE Processing Pipeline 59c2f6b85fb8bb3ed1d6a9cad8d24a8a https://www.encodeproject.org/files/ENCFF985FIT/@@download/ENCFF985FIT.bed.gz mm10 released mild to moderate bottlenecking ENCFF946SSY bed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF142GHN, ENCFF270SEO, ENCFF617IEA, ENCFF652BTE 929469 ENCODE Processing Pipeline 43fe256696cdbaf145b8ae4a7df58ef0 https://www.encodeproject.org/files/ENCFF946SSY/@@download/ENCFF946SSY.bed.gz mm10 released mild to moderate bottlenecking ENCFF817ETP bigBed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF794BUX 2541852 ENCODE Processing Pipeline ef3aa6a623e0db15aea5add157d1daeb https://www.encodeproject.org/files/ENCFF817ETP/@@download/ENCFF817ETP.bigBed mm10 released mild to moderate bottlenecking ENCFF647UWD bigBed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF985FIT 2635468 ENCODE Processing Pipeline 86359a3eff743e8828f57a977dcd7172 https://www.encodeproject.org/files/ENCFF647UWD/@@download/ENCFF647UWD.bigBed mm10 released mild to moderate bottlenecking ENCFF722NMR bigBed narrowPeak peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF946SSY 2832173 ENCODE Processing Pipeline bf0c9dc0528b01792b46fe4c341ee32e https://www.encodeproject.org/files/ENCFF722NMR/@@download/ENCFF722NMR.bigBed mm10 released mild to moderate bottlenecking ENCFF871QGP bigWig signal p-value ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF142GHN, ENCFF652BTE 577495672 ENCODE Processing Pipeline f7c1b34b41412c9ed54fc719181c6302 https://www.encodeproject.org/files/ENCFF871QGP/@@download/ENCFF871QGP.bigWig mm10 released mild to moderate bottlenecking ENCFF768TWF bigWig signal p-value ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF617IEA 579099957 ENCODE Processing Pipeline ed669dc9c864e05d6c73313224792735 https://www.encodeproject.org/files/ENCFF768TWF/@@download/ENCFF768TWF.bigWig mm10 released mild to moderate bottlenecking ENCFF976NAI bigWig signal p-value ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF142GHN, ENCFF270SEO, ENCFF617IEA, ENCFF652BTE 995520430 ENCODE Processing Pipeline 674ea3172f5aff75f10ef5a165fbdd63 https://www.encodeproject.org/files/ENCFF976NAI/@@download/ENCFF976NAI.bigWig mm10 released mild to moderate bottlenecking ENCFF716HTR bigWig fold change over control ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF142GHN, ENCFF652BTE 559488401 ENCODE Processing Pipeline 65a54d89f4427cdb255989f59be0e25f https://www.encodeproject.org/files/ENCFF716HTR/@@download/ENCFF716HTR.bigWig mm10 released mild to moderate bottlenecking ENCFF138BWI bigWig fold change over control ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF617IEA 607074194 ENCODE Processing Pipeline 498782118b9babfa97dae71b09d9ca23 https://www.encodeproject.org/files/ENCFF138BWI/@@download/ENCFF138BWI.bigWig mm10 released mild to moderate bottlenecking ENCFF323VNT bigWig fold change over control ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF142GHN, ENCFF270SEO, ENCFF617IEA, ENCFF652BTE 1096187531 ENCODE Processing Pipeline 012ffdd5b7bc8256cd4ceabc22f9902e https://www.encodeproject.org/files/ENCFF323VNT/@@download/ENCFF323VNT.bigWig mm10 released mild to moderate bottlenecking ENCFF836NCO bed narrowPeak replicated peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF794BUX, ENCFF946SSY, ENCFF985FIT 955894 ENCODE Processing Pipeline 822dc00c5817192115b5fe5209458a73 https://www.encodeproject.org/files/ENCFF836NCO/@@download/ENCFF836NCO.bed.gz mm10 released mild to moderate bottlenecking ENCFF794LMG bigBed narrowPeak replicated peaks ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF836NCO 2183174 ENCODE Processing Pipeline 3ce3c75bd755fa55311e4e7062c81520 https://www.encodeproject.org/files/ENCFF794LMG/@@download/ENCFF794LMG.bigBed mm10 released mild to moderate bottlenecking ENCFF001KSX bam alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KTJ 324900180 Bing Ren, UCSD 801f8a10ab3a8fe98ed55b6d0d1f62ad https://www.encodeproject.org/files/ENCFF001KSX/@@download/ENCFF001KSX.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KSY bam alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KTI 595778189 Bing Ren, UCSD 42df5c70506e1a201eab906d3f8c79aa https://www.encodeproject.org/files/ENCFF001KSY/@@download/ENCFF001KSY.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KSZ bigBed broadPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYU 1522497 Bing Ren, UCSD 04976c4a8f501511b5ee016476b7b136 https://www.encodeproject.org/files/ENCFF001KSZ/@@download/ENCFF001KSZ.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KTD bigWig signal ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSX, ENCFF001KSY 51096125 Bing Ren, UCSD b32801b31a03f31ca5ddacb0c7f83964 https://www.encodeproject.org/files/ENCFF001KTD/@@download/ENCFF001KTD.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KTI fastq reads ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 701432173 Bing Ren, UCSD 8fe0eeadae7ed96093525b7ace584d03 https://www.encodeproject.org/files/ENCFF001KTI/@@download/ENCFF001KTI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KTJ fastq reads ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 30 single-ended 387351251 Bing Ren, UCSD 68a2b08f851df6b4560ae1dae55b0f9e https://www.encodeproject.org/files/ENCFF001KTJ/@@download/ENCFF001KTJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUJ/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001XYU bed broadPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSX, ENCFF001KSY 1057962 Bing Ren, UCSD bdf7575ae570b972c60fbef78397504c https://www.encodeproject.org/files/ENCFF001XYU/@@download/ENCFF001XYU.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF147ZUB bam unfiltered alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KTJ, ENCFF018NEO 448144491 ENCODE Processing Pipeline 323787a0b13898511fa4683c8cd32120 https://www.encodeproject.org/files/ENCFF147ZUB/@@download/ENCFF147ZUB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF470PFJ bam unfiltered alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTI, ENCFF018NEO 762659341 ENCODE Processing Pipeline 3b02881be3007e8ef4eb49ce20d9cf86 https://www.encodeproject.org/files/ENCFF470PFJ/@@download/ENCFF470PFJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF168MHP bam alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KTJ, ENCFF018NEO 268040652 ENCODE Processing Pipeline 2cc07b264e16fd91ec21064202cea4d5 https://www.encodeproject.org/files/ENCFF168MHP/@@download/ENCFF168MHP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF264AOI bam alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTI, ENCFF018NEO 536168287 ENCODE Processing Pipeline 9558a4b2c598465fcbdf8fc7a3e3c61d https://www.encodeproject.org/files/ENCFF264AOI/@@download/ENCFF264AOI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF877VNF bed narrowPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF168MHP, ENCFF769FTV 2381008 ENCODE Processing Pipeline 46b0c7bb549e1bf10ae5ccd75dd44f97 https://www.encodeproject.org/files/ENCFF877VNF/@@download/ENCFF877VNF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF673YKC bed narrowPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF264AOI 3307936 ENCODE Processing Pipeline d636128924407dd103dcb660f1f49dbd https://www.encodeproject.org/files/ENCFF673YKC/@@download/ENCFF673YKC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF950NXS bigBed narrowPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF673YKC 9045190 ENCODE Processing Pipeline 7a20a6eaa3f4a4ff75364c11195839af https://www.encodeproject.org/files/ENCFF950NXS/@@download/ENCFF950NXS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF944PND bed narrowPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF168MHP, ENCFF242QZL, ENCFF264AOI, ENCFF769FTV 3416045 ENCODE Processing Pipeline 1acdd0a71224ef856c3a87f06038b919 https://www.encodeproject.org/files/ENCFF944PND/@@download/ENCFF944PND.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF438UHV bigBed narrowPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF877VNF 5071699 ENCODE Processing Pipeline 44fd7fe12145720bddcbfd359efa9761 https://www.encodeproject.org/files/ENCFF438UHV/@@download/ENCFF438UHV.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF475VJP bigWig signal p-value ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF168MHP, ENCFF769FTV 291182234 ENCODE Processing Pipeline bbfaf833a8a561cb910338222f562960 https://www.encodeproject.org/files/ENCFF475VJP/@@download/ENCFF475VJP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF958RRU bigBed narrowPeak peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF944PND 9376914 ENCODE Processing Pipeline c2acfa845d55944028c47767d8ce8ab1 https://www.encodeproject.org/files/ENCFF958RRU/@@download/ENCFF958RRU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF020MHS bigWig signal p-value ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF264AOI 359077840 ENCODE Processing Pipeline e0e6ed06cf7360c0d912d83493a0abbb https://www.encodeproject.org/files/ENCFF020MHS/@@download/ENCFF020MHS.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF380IQZ bigWig signal p-value ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF168MHP, ENCFF242QZL, ENCFF264AOI, ENCFF769FTV 547462412 ENCODE Processing Pipeline ab051c97e011067de360a6f69d4b14e1 https://www.encodeproject.org/files/ENCFF380IQZ/@@download/ENCFF380IQZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF804VWE bigWig fold change over control ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF264AOI 270273885 ENCODE Processing Pipeline 5597020fcab4e5ad6f91348d30dc0c48 https://www.encodeproject.org/files/ENCFF804VWE/@@download/ENCFF804VWE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF048HOO bigWig fold change over control ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF168MHP, ENCFF769FTV 145013972 ENCODE Processing Pipeline cd6ac82f9ba84fa3ece69198a1b956e0 https://www.encodeproject.org/files/ENCFF048HOO/@@download/ENCFF048HOO.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF159RUF bigWig fold change over control ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF168MHP, ENCFF242QZL, ENCFF264AOI, ENCFF769FTV 480789836 ENCODE Processing Pipeline 0079c12d391794875075f5a0443cf616 https://www.encodeproject.org/files/ENCFF159RUF/@@download/ENCFF159RUF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF287FQD bed narrowPeak replicated peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF673YKC, ENCFF877VNF, ENCFF944PND 2475570 ENCODE Processing Pipeline af625cf580fa694e5ce27b66a6fd21dd https://www.encodeproject.org/files/ENCFF287FQD/@@download/ENCFF287FQD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF704SIN bigBed narrowPeak replicated peaks ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF287FQD 5159919 ENCODE Processing Pipeline 2fdee2ab71f21a758ef50aaabc5bdd4f https://www.encodeproject.org/files/ENCFF704SIN/@@download/ENCFF704SIN.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001HZI bigBed narrowPeak peaks ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUI 462911 Barbara Wold, Caltech c5c59127ced57ef9ffc76a423e497f5f https://www.encodeproject.org/files/ENCFF001HZI/@@download/ENCFF001HZI.bigBed mm9 released insufficient read depth, control insufficient read depth ENCFF001HZJ bam alignments ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IAA 1184461992 Barbara Wold, Caltech bc13ba05f20b270d6031d6c0b77db31f https://www.encodeproject.org/files/ENCFF001HZJ/@@download/ENCFF001HZJ.bam mm9 released insufficient read depth, control insufficient read depth ENCFF001HZK bigWig signal ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZJ 153289264 Barbara Wold, Caltech 47fade2f66f3a2822c660b0647fd707a https://www.encodeproject.org/files/ENCFF001HZK/@@download/ENCFF001HZK.bigWig mm9 released insufficient read depth, control insufficient read depth ENCFF001IAA fastq reads ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 1182174345 Barbara Wold, Caltech 21d6912fb627a4f3280aec032923dfc9 https://www.encodeproject.org/files/ENCFF001IAA/@@download/ENCFF001IAA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released insufficient read depth, control insufficient read depth ENCFF001XUI bed narrowPeak peaks ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZJ 272570 Barbara Wold, Caltech e2a634b883e53c9935d790af38f6cdb3 https://www.encodeproject.org/files/ENCFF001XUI/@@download/ENCFF001XUI.bed.gz mm9 released insufficient read depth, control insufficient read depth ENCFF023WKU bam alignments ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAA, ENCFF018NEO 983279796 ENCODE Processing Pipeline 504c570663762853902d365fd5488e77 https://www.encodeproject.org/files/ENCFF023WKU/@@download/ENCFF023WKU.bam mm10 released insufficient read depth, control insufficient read depth ENCFF266OPO bam unfiltered alignments ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAA, ENCFF018NEO 1243136353 ENCODE Processing Pipeline c65bc977299091d4b5c8c2a47e801ab3 https://www.encodeproject.org/files/ENCFF266OPO/@@download/ENCFF266OPO.bam mm10 released insufficient read depth, control insufficient read depth ENCFF464BFS bed narrowPeak peaks ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF023WKU, ENCFF875IDP 2169000 ENCODE Processing Pipeline 7d9871179ec77c9db3b364081cfaddb3 https://www.encodeproject.org/files/ENCFF464BFS/@@download/ENCFF464BFS.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF279GXC bigBed narrowPeak peaks ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF464BFS 4599539 ENCODE Processing Pipeline 2c067a82473c2ea58eeb4b3017e6ef58 https://www.encodeproject.org/files/ENCFF279GXC/@@download/ENCFF279GXC.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF442ENM bigWig fold change over control ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF023WKU, ENCFF875IDP 240337812 ENCODE Processing Pipeline 9ff00c125f2f03c1e9dd6f3982cc7311 https://www.encodeproject.org/files/ENCFF442ENM/@@download/ENCFF442ENM.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF446YXM bigWig signal p-value ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF023WKU, ENCFF875IDP 239357456 ENCODE Processing Pipeline a75ef6c160092106981e2128bc884de3 https://www.encodeproject.org/files/ENCFF446YXM/@@download/ENCFF446YXM.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF989JXU bed narrowPeak stable peaks ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF464BFS 2165864 ENCODE Processing Pipeline 4aa52525cb77ede271c663fbb32b8455 https://www.encodeproject.org/files/ENCFF989JXU/@@download/ENCFF989JXU.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF643AAI bigBed narrowPeak stable peaks ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF989JXU 3880393 ENCODE Processing Pipeline 3c23a90679c2a96e66107a336e5968ee https://www.encodeproject.org/files/ENCFF643AAI/@@download/ENCFF643AAI.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF001IAO bigBed narrowPeak peaks ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUO 208838 Barbara Wold, Caltech b87e85ba9d541b26870b03769cdbdc21 https://www.encodeproject.org/files/ENCFF001IAO/@@download/ENCFF001IAO.bigBed mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAP fastq reads ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 479583974 Barbara Wold, Caltech 5d0238087d6804c21c5da55d3348523c https://www.encodeproject.org/files/ENCFF001IAP/@@download/ENCFF001IAP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAQ fastq reads ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 648864152 Barbara Wold, Caltech 7dc6b76d0e7e1d416605c7c3f632364d https://www.encodeproject.org/files/ENCFF001IAQ/@@download/ENCFF001IAQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAR fastq reads ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 654891085 Barbara Wold, Caltech c6730c98076c462ab47b23af5fd5b4c0 https://www.encodeproject.org/files/ENCFF001IAR/@@download/ENCFF001IAR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAS bigWig signal ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAT 180212765 Barbara Wold, Caltech 3063a0f3ce6f55ccfb035583696ba4d6 https://www.encodeproject.org/files/ENCFF001IAS/@@download/ENCFF001IAS.bigWig mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAT bam alignments ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IAP, ENCFF001IAQ, ENCFF001IAR 1960399093 Barbara Wold, Caltech 5a9c9c051e3c8e8cfe036344b8af2188 https://www.encodeproject.org/files/ENCFF001IAT/@@download/ENCFF001IAT.bam mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001XUO bed narrowPeak peaks ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAT 81075 Barbara Wold, Caltech f99bff447d8b5fbf11f49e30a6057f09 https://www.encodeproject.org/files/ENCFF001XUO/@@download/ENCFF001XUO.bed.gz mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF617NIR bam unfiltered alignments ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001IAP, ENCFF001IAQ, ENCFF001IAR, ENCFF018NEO 2081843175 ENCODE Processing Pipeline 8fd1bf36327a8ff6fde828664ad2f3d4 https://www.encodeproject.org/files/ENCFF617NIR/@@download/ENCFF617NIR.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF939DHB bam alignments ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001IAP, ENCFF001IAQ, ENCFF001IAR, ENCFF018NEO 900241868 ENCODE Processing Pipeline 9aca93915cd0c54d43961fdfeb1a19df https://www.encodeproject.org/files/ENCFF939DHB/@@download/ENCFF939DHB.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF454SWL bigBed narrowPeak peaks ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF143HAM 4001755 ENCODE Processing Pipeline 3f3fa287d818fc354b63bba044ac3a28 https://www.encodeproject.org/files/ENCFF454SWL/@@download/ENCFF454SWL.bigBed mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF143HAM bed narrowPeak peaks ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF319ZGT, ENCFF939DHB 1964487 ENCODE Processing Pipeline 7a8df2752b4c88b1a9e58194d6180eb0 https://www.encodeproject.org/files/ENCFF143HAM/@@download/ENCFF143HAM.bed.gz mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF760HFZ bigWig signal p-value ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF319ZGT, ENCFF939DHB 232251305 ENCODE Processing Pipeline 1ea0714d94eaeb47bac2e3c6230470c3 https://www.encodeproject.org/files/ENCFF760HFZ/@@download/ENCFF760HFZ.bigWig mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF962JNF bigWig fold change over control ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF319ZGT, ENCFF939DHB 275219696 ENCODE Processing Pipeline fb479f78d096f65cbf3bab85a0998808 https://www.encodeproject.org/files/ENCFF962JNF/@@download/ENCFF962JNF.bigWig mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF569LDY bed narrowPeak stable peaks ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF143HAM 1765047 ENCODE Processing Pipeline bbbdabfea85120f64bc26f4e6c015ea5 https://www.encodeproject.org/files/ENCFF569LDY/@@download/ENCFF569LDY.bed.gz mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF343SCH bigBed narrowPeak stable peaks ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF569LDY 3041921 ENCODE Processing Pipeline 98f8b7fe0446117ca54c80928542a5ad https://www.encodeproject.org/files/ENCFF343SCH/@@download/ENCFF343SCH.bigBed mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF002APC fastq reads ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 1024217829 Bing Ren, UCSD 62f75aa8f327bfb685bb63ccb9e5d4d7 SRA:SRR3651430 https://www.encodeproject.org/files/ENCFF002APC/@@download/ENCFF002APC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQD/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002APL fastq reads ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 50 single-ended 1515102682 Bing Ren, UCSD 269a977cbc1ddc5a943c59172fd38539 SRA:SRR3651433 https://www.encodeproject.org/files/ENCFF002APL/@@download/ENCFF002APL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQH/ released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002APH fastq reads ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 1223620893 Bing Ren, UCSD 2a3dd598047ab7cf1c6c704245940045 SRA:SRR3651434 https://www.encodeproject.org/files/ENCFF002APH/@@download/ENCFF002APH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQH/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002APB fastq reads ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 3 36 single-ended 501915568 Bing Ren, UCSD beef1b8d5cd59729b3e90cfc541f774f SRA:SRR3651431 https://www.encodeproject.org/files/ENCFF002APB/@@download/ENCFF002APB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQD/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002APD fastq reads ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 3 36 single-ended 567397871 Bing Ren, UCSD d648428586aec786263bf9d1c94a8f7f SRA:SRR3651435 https://www.encodeproject.org/files/ENCFF002APD/@@download/ENCFF002APD.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQH/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002APM fastq reads ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 50 single-ended 1623010194 Bing Ren, UCSD ab69dc4923ef9df8ec8601b8e0955f66 SRA:SRR3651432 https://www.encodeproject.org/files/ENCFF002APM/@@download/ENCFF002APM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQD/ released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF360BYX bam alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002APD, ENCFF002APH, ENCFF002APL, ENCFF806TVZ 1818538757 ENCODE Processing Pipeline 690feb5488ec460932c499b2ea17fb46 https://www.encodeproject.org/files/ENCFF360BYX/@@download/ENCFF360BYX.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF440TDV bam alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002APB, ENCFF002APC, ENCFF002APM, ENCFF806TVZ 1722484121 ENCODE Processing Pipeline 7a6665f7c4e6932df1120c6a067fa0f8 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mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF047RFK bigBed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF390VGX 194906 ENCODE Processing Pipeline 04a6200ffcb1019a18a5fe55d365ce5d https://www.encodeproject.org/files/ENCFF047RFK/@@download/ENCFF047RFK.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF082MCT bigBed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF149PAY 269311 ENCODE Processing Pipeline a046deda74a865d046508b24fb1d5ecf https://www.encodeproject.org/files/ENCFF082MCT/@@download/ENCFF082MCT.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control 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DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF015AUK, ENCFF360BYX, ENCFF440TDV, ENCFF999ZTB 375001356 ENCODE Processing Pipeline c8a40c153d35464b6fff97b35ee11424 https://www.encodeproject.org/files/ENCFF827KDG/@@download/ENCFF827KDG.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF184VNZ bigWig fold change over control ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF015AUK, ENCFF440TDV, ENCFF999ZTB 470797969 ENCODE Processing Pipeline 222ef390a35021e922aee49304c5fb38 https://www.encodeproject.org/files/ENCFF184VNZ/@@download/ENCFF184VNZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF023ADW bigWig fold change over control ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF015AUK, ENCFF360BYX, ENCFF999ZTB 585250200 ENCODE Processing Pipeline 002e8e764de256e3f9a9b909d963b233 https://www.encodeproject.org/files/ENCFF023ADW/@@download/ENCFF023ADW.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF386SUX bigBed narrowPeak replicated peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF463FLW 146879 ENCODE Processing Pipeline 3cc2bde3c367bcbfcac0889c8bdf5cd9 https://www.encodeproject.org/files/ENCFF386SUX/@@download/ENCFF386SUX.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF831WET bigWig fold change over control ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF015AUK, ENCFF360BYX, ENCFF440TDV, ENCFF999ZTB 899259672 ENCODE Processing Pipeline 4d0a41f45b3c492c50ab573e6b7c436f https://www.encodeproject.org/files/ENCFF831WET/@@download/ENCFF831WET.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF463FLW bed narrowPeak replicated peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF149PAY, ENCFF208XBX, ENCFF390VGX 24554 ENCODE Processing Pipeline d81bd97dec4a26114ce0a2edc59f3576 https://www.encodeproject.org/files/ENCFF463FLW/@@download/ENCFF463FLW.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF023HMA bam unfiltered alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002APD, ENCFF002APH, ENCFF002APL, ENCFF018NEO 3395388014 ENCODE Processing Pipeline b131c5795ab5651adfa4bac0940b2af7 https://www.encodeproject.org/files/ENCFF023HMA/@@download/ENCFF023HMA.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF147VUI bam unfiltered alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002APB, ENCFF002APC, ENCFF002APM, ENCFF018NEO 3181850141 ENCODE Processing Pipeline 1c89552bd4c029b74d27478af39da1aa https://www.encodeproject.org/files/ENCFF147VUI/@@download/ENCFF147VUI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF743RKU bam alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002APD, ENCFF002APH, ENCFF002APL, ENCFF018NEO 1587597227 ENCODE Processing Pipeline 14c56b85b00f061af843531603a4b5e3 https://www.encodeproject.org/files/ENCFF743RKU/@@download/ENCFF743RKU.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF548LOV bam alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002APB, ENCFF002APC, ENCFF002APM, ENCFF018NEO 1482088979 ENCODE Processing Pipeline 91d28d54492ece2390f1f99604ce7561 https://www.encodeproject.org/files/ENCFF548LOV/@@download/ENCFF548LOV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF878QCT bed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF310BPU, ENCFF548LOV, ENCFF957ZHQ 89739 ENCODE Processing Pipeline 741b5f43397374ca4d87346169750e24 https://www.encodeproject.org/files/ENCFF878QCT/@@download/ENCFF878QCT.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF218RRP bed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF743RKU, ENCFF957ZHQ 12321 ENCODE Processing Pipeline 8390c180f6b83762db171f7b0d738535 https://www.encodeproject.org/files/ENCFF218RRP/@@download/ENCFF218RRP.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF788CHT bigBed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF218RRP 123536 ENCODE Processing Pipeline 8a28db741165edbd06a7401c4584f776 https://www.encodeproject.org/files/ENCFF788CHT/@@download/ENCFF788CHT.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF599TPP bed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF310BPU, ENCFF548LOV, ENCFF743RKU, ENCFF957ZHQ 46030 ENCODE Processing Pipeline 0672b0304888eb1196b5ecdbf9a63036 https://www.encodeproject.org/files/ENCFF599TPP/@@download/ENCFF599TPP.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF697SFS bigBed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF878QCT 258760 ENCODE Processing Pipeline dd2282e245d2a7c096076c03ca3b9e78 https://www.encodeproject.org/files/ENCFF697SFS/@@download/ENCFF697SFS.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF547EKT bigWig signal p-value ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF310BPU, ENCFF548LOV, ENCFF957ZHQ 412328761 ENCODE Processing Pipeline 624ff88f46fb915a89f982f94ede48c6 https://www.encodeproject.org/files/ENCFF547EKT/@@download/ENCFF547EKT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF673SJR bigBed narrowPeak peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF599TPP 189699 ENCODE Processing Pipeline 01383f44799ff19b377c2aa9bc872952 https://www.encodeproject.org/files/ENCFF673SJR/@@download/ENCFF673SJR.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF968QAW bigWig signal p-value ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF743RKU, ENCFF957ZHQ 220956993 ENCODE Processing Pipeline d4db08a762a20f6874b782609d5c6c4d https://www.encodeproject.org/files/ENCFF968QAW/@@download/ENCFF968QAW.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF416IXY bigWig signal p-value ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF310BPU, ENCFF548LOV, ENCFF743RKU, ENCFF957ZHQ 417669466 ENCODE Processing Pipeline b150ba90715ab57e129f1599260ee42e https://www.encodeproject.org/files/ENCFF416IXY/@@download/ENCFF416IXY.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF083APH bigWig fold change over control ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF310BPU, ENCFF548LOV, ENCFF957ZHQ 560469997 ENCODE Processing Pipeline 9b73bfc1100697f5950c0302c4b056d4 https://www.encodeproject.org/files/ENCFF083APH/@@download/ENCFF083APH.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF086AKJ bigWig fold change over control ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF743RKU, ENCFF957ZHQ 506094144 ENCODE Processing Pipeline 3f57abfb4c6781280c72bfad6d0ef904 https://www.encodeproject.org/files/ENCFF086AKJ/@@download/ENCFF086AKJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF716TGN bigWig fold change over control ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF310BPU, ENCFF548LOV, ENCFF743RKU, ENCFF957ZHQ 924386263 ENCODE Processing Pipeline ca1d868fbc8f241cb4eee16241234a65 https://www.encodeproject.org/files/ENCFF716TGN/@@download/ENCFF716TGN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF248KEE bed narrowPeak replicated peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF218RRP, ENCFF599TPP, ENCFF878QCT 26857 ENCODE Processing Pipeline 3db75d024e4e9bf650be86b7370f8b92 https://www.encodeproject.org/files/ENCFF248KEE/@@download/ENCFF248KEE.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF295WUT bigBed narrowPeak replicated peaks ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF248KEE 156161 ENCODE Processing Pipeline d0ae0c0d30766d4bac9977d0d1230c99 https://www.encodeproject.org/files/ENCFF295WUT/@@download/ENCFF295WUT.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF001HYY bigBed narrowPeak peaks ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUF 683769 Barbara Wold, Caltech d336ffcb2815bc27f558df1b613802b4 https://www.encodeproject.org/files/ENCFF001HYY/@@download/ENCFF001HYY.bigBed mm9 released control low read depth, low read depth ENCFF001HYZ bam alignments ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001HZS 1002656169 Barbara Wold, Caltech 7a2a9aa268469d39b47c87beb1230e0e https://www.encodeproject.org/files/ENCFF001HYZ/@@download/ENCFF001HYZ.bam mm9 released control low read depth, low read depth ENCFF001HZA bigWig signal ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HYZ 112249150 Barbara Wold, Caltech b8d2f64650efaf479de2e5400a730a9c https://www.encodeproject.org/files/ENCFF001HZA/@@download/ENCFF001HZA.bigWig mm9 released control low read depth, low read depth ENCFF001HZS fastq reads ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 977510269 Barbara Wold, Caltech 50c184ce1b2fd5644fda7dfc7e2c539c https://www.encodeproject.org/files/ENCFF001HZS/@@download/ENCFF001HZS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released control low read depth, low read depth ENCFF001XUF bed narrowPeak peaks ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HYZ 323504 Barbara Wold, Caltech 1ac74a6bf74c2cbe133834c1de28a080 https://www.encodeproject.org/files/ENCFF001XUF/@@download/ENCFF001XUF.bed.gz mm9 released control low read depth, low read depth ENCFF457DOV bam unfiltered alignments ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001HZS, ENCFF018NEO 1056929910 ENCODE Processing Pipeline 7111ddb60be262af854fc7a4d9151017 https://www.encodeproject.org/files/ENCFF457DOV/@@download/ENCFF457DOV.bam mm10 released control low read depth, low read depth ENCFF277FKY bam alignments ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001HZS, ENCFF018NEO 785538884 ENCODE Processing Pipeline 5cb5e40023b9d332e41545ca340d908b https://www.encodeproject.org/files/ENCFF277FKY/@@download/ENCFF277FKY.bam mm10 released control low read depth, low read depth ENCFF821VAV bed narrowPeak peaks ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF277FKY, ENCFF875IDP 1998784 ENCODE Processing Pipeline 02e7e16dfaf5a27fa028bdfbb9e96274 https://www.encodeproject.org/files/ENCFF821VAV/@@download/ENCFF821VAV.bed.gz mm10 released control low read depth, low read depth ENCFF453RGA bigBed narrowPeak peaks ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF821VAV 4325398 ENCODE Processing Pipeline 55d291346fbdf298f55f0f938f471ece https://www.encodeproject.org/files/ENCFF453RGA/@@download/ENCFF453RGA.bigBed mm10 released control low read depth, low read depth ENCFF443FUS bigWig signal p-value ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF277FKY, ENCFF875IDP 231623442 ENCODE Processing Pipeline e592a2edb0b1fc1397295950896f9644 https://www.encodeproject.org/files/ENCFF443FUS/@@download/ENCFF443FUS.bigWig mm10 released control low read depth, low read depth ENCFF471FAC bed narrowPeak stable peaks ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF821VAV 1734739 ENCODE Processing Pipeline e7937d46759cef64d22e0d6cb770e6f8 https://www.encodeproject.org/files/ENCFF471FAC/@@download/ENCFF471FAC.bed.gz mm10 released control low read depth, low read depth ENCFF840HPF bigBed narrowPeak stable peaks ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF471FAC 3250256 ENCODE Processing Pipeline fdebb0652498f9ac30a39ddf6e4d5b15 https://www.encodeproject.org/files/ENCFF840HPF/@@download/ENCFF840HPF.bigBed mm10 released control low read depth, low read depth ENCFF921JTJ bigWig fold change over control ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF277FKY, ENCFF875IDP 181802782 ENCODE Processing Pipeline 3445dd12f815885ea426f23c91037fbf https://www.encodeproject.org/files/ENCFF921JTJ/@@download/ENCFF921JTJ.bigWig mm10 released control low read depth, low read depth ENCFF189ORD fastq reads ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1723461613 Bing Ren, UCSD 0e69a26cb411c4fa5dc1b82d97f8a2ee SRA:SRR3651500 https://www.encodeproject.org/files/ENCFF189ORD/@@download/ENCFF189ORD.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released mild to moderate bottlenecking ENCFF123VKP fastq reads ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1160818149 Bing Ren, UCSD b6dc1f6b6ec377c4f08f9235a8655706 SRA:SRR3651501 https://www.encodeproject.org/files/ENCFF123VKP/@@download/ENCFF123VKP.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released mild to moderate bottlenecking ENCFF270CVT bam alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF123VKP, ENCFF806TVZ 1051346860 ENCODE Processing Pipeline 3bec349ce9bfbb4bddc97dfaff6c8939 https://www.encodeproject.org/files/ENCFF270CVT/@@download/ENCFF270CVT.bam mm10-minimal archived mild to moderate bottlenecking ENCFF429AKJ bam alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF189ORD, ENCFF806TVZ 1525522614 ENCODE Processing Pipeline 3ca1c2bbccd1680e3b91e43477abaebd https://www.encodeproject.org/files/ENCFF429AKJ/@@download/ENCFF429AKJ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF443PNZ bed narrowPeak peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF429AKJ, ENCFF581EXC 583346 ENCODE Processing Pipeline 0c7315c21265d05898fe6dca006262a7 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a44167211d5a837798e76db0582f98dd https://www.encodeproject.org/files/ENCFF169CWY/@@download/ENCFF169CWY.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF957MTM bigWig fold change over control ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF429AKJ, ENCFF581EXC 636498413 ENCODE Processing Pipeline 2c847ae0cd19004bde89555cbc1235f1 https://www.encodeproject.org/files/ENCFF957MTM/@@download/ENCFF957MTM.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF542DBM bigWig fold change over control ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF270CVT 497612342 ENCODE Processing Pipeline 7fcf8968fa667e77550a38b5a9e3fa6a https://www.encodeproject.org/files/ENCFF542DBM/@@download/ENCFF542DBM.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF218EVK bigWig fold change over control ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF270CVT, ENCFF429AKJ, ENCFF581EXC 1033491734 ENCODE Processing Pipeline 49df3e990bf053fba94a38d4ac68800c https://www.encodeproject.org/files/ENCFF218EVK/@@download/ENCFF218EVK.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF172VJZ bed narrowPeak replicated peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF397HWB, ENCFF443PNZ, ENCFF676XYR 636118 ENCODE Processing Pipeline 93a986d15d240501898f24af4e5d6ce3 https://www.encodeproject.org/files/ENCFF172VJZ/@@download/ENCFF172VJZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF299EDT bigBed narrowPeak replicated peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF172VJZ 1527459 ENCODE Processing Pipeline a6c97518eaf7e62ccff43811d6580330 https://www.encodeproject.org/files/ENCFF299EDT/@@download/ENCFF299EDT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF110ZXL bam unfiltered alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF123VKP 1485011931 ENCODE Processing Pipeline f18ebd02a1aab09c25cffd068e660b09 https://www.encodeproject.org/files/ENCFF110ZXL/@@download/ENCFF110ZXL.bam mm10 released mild to moderate bottlenecking ENCFF080TKR bam unfiltered alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF189ORD 2168462508 ENCODE Processing Pipeline f7188a059697d541e261930c73dd0f53 https://www.encodeproject.org/files/ENCFF080TKR/@@download/ENCFF080TKR.bam mm10 released mild to moderate bottlenecking ENCFF149QEZ bam alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF123VKP 1051081880 ENCODE Processing Pipeline 14c6e7579d366d1b5389158c2ff976c8 https://www.encodeproject.org/files/ENCFF149QEZ/@@download/ENCFF149QEZ.bam mm10 released mild to moderate bottlenecking ENCFF173HJD bam alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF189ORD 1525143946 ENCODE Processing Pipeline 9cf24ef3bf6a2a775b2712bc211f6536 https://www.encodeproject.org/files/ENCFF173HJD/@@download/ENCFF173HJD.bam mm10 released mild to moderate bottlenecking ENCFF356HZC bed narrowPeak peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF173HJD, ENCFF652BTE 550073 ENCODE Processing Pipeline 69c576daf29e457a6df997dd2902177c https://www.encodeproject.org/files/ENCFF356HZC/@@download/ENCFF356HZC.bed.gz mm10 released mild to moderate bottlenecking ENCFF616ZNQ bed narrowPeak peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF149QEZ, ENCFF173HJD, ENCFF270SEO, ENCFF652BTE 624400 ENCODE Processing Pipeline 27783077e2077c995260d5ce518e1edf https://www.encodeproject.org/files/ENCFF616ZNQ/@@download/ENCFF616ZNQ.bed.gz mm10 released mild to moderate bottlenecking ENCFF596KDH bed narrowPeak peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF149QEZ, ENCFF270SEO 519296 ENCODE Processing Pipeline 6ac8a5af37d558d726d6a5c441edaaf0 https://www.encodeproject.org/files/ENCFF596KDH/@@download/ENCFF596KDH.bed.gz mm10 released mild to moderate bottlenecking ENCFF323YNY bigBed narrowPeak peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF356HZC 1776211 ENCODE Processing Pipeline 59550482726a304e72af38f7c9eda7c7 https://www.encodeproject.org/files/ENCFF323YNY/@@download/ENCFF323YNY.bigBed mm10 released mild to moderate bottlenecking ENCFF138AAX bigBed narrowPeak peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF596KDH 1703708 ENCODE Processing Pipeline 2b244f3fc75a764835a4b0091aca1cbe https://www.encodeproject.org/files/ENCFF138AAX/@@download/ENCFF138AAX.bigBed mm10 released mild to moderate bottlenecking ENCFF771FIA bigWig signal p-value ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF173HJD, ENCFF652BTE 536591148 ENCODE Processing Pipeline 18523d8a7227c30e0bba206240dc6deb https://www.encodeproject.org/files/ENCFF771FIA/@@download/ENCFF771FIA.bigWig mm10 released mild to moderate bottlenecking ENCFF207VOH bigBed narrowPeak peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF616ZNQ 1912213 ENCODE Processing Pipeline 7c8163e59a11782150829093d5c82f34 https://www.encodeproject.org/files/ENCFF207VOH/@@download/ENCFF207VOH.bigBed mm10 released mild to moderate bottlenecking ENCFF557HHF bigWig signal p-value ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF149QEZ, ENCFF270SEO 449420548 ENCODE Processing Pipeline d674549b084c1bcc889d0ddf9305ea5a https://www.encodeproject.org/files/ENCFF557HHF/@@download/ENCFF557HHF.bigWig mm10 released mild to moderate bottlenecking ENCFF762SEF bigWig signal p-value ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF149QEZ, ENCFF173HJD, ENCFF270SEO, ENCFF652BTE 820742755 ENCODE Processing Pipeline ac49f79c9718df99fbf7379fe3f1c24e https://www.encodeproject.org/files/ENCFF762SEF/@@download/ENCFF762SEF.bigWig mm10 released mild to moderate bottlenecking ENCFF198VVY bigWig fold change over control ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF173HJD, ENCFF652BTE 662043676 ENCODE Processing Pipeline 755e51df8a16920301c14d19bc294c3e https://www.encodeproject.org/files/ENCFF198VVY/@@download/ENCFF198VVY.bigWig mm10 released mild to moderate bottlenecking ENCFF009VJN bigWig fold change over control ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF149QEZ, ENCFF270SEO 498576605 ENCODE Processing Pipeline f52e8344e2cac8d86109a43148fda845 https://www.encodeproject.org/files/ENCFF009VJN/@@download/ENCFF009VJN.bigWig mm10 released mild to moderate bottlenecking ENCFF493WPM bigWig fold change over control ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF149QEZ, ENCFF173HJD, ENCFF270SEO, ENCFF652BTE 1080108554 ENCODE Processing Pipeline 559e8cf8eea214e4dd37c440eb8af758 https://www.encodeproject.org/files/ENCFF493WPM/@@download/ENCFF493WPM.bigWig mm10 released mild to moderate bottlenecking ENCFF577GBD bed narrowPeak replicated peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF356HZC, ENCFF596KDH, ENCFF616ZNQ 652659 ENCODE Processing Pipeline 8b3342c3dc2dfac804e651e58f45f1a5 https://www.encodeproject.org/files/ENCFF577GBD/@@download/ENCFF577GBD.bed.gz mm10 released mild to moderate bottlenecking ENCFF291LWL bigBed narrowPeak replicated peaks ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF577GBD 1558586 ENCODE Processing Pipeline 244edf3f0bb9263482b5dcacd1734f1c https://www.encodeproject.org/files/ENCFF291LWL/@@download/ENCFF291LWL.bigBed mm10 released mild to moderate bottlenecking ENCFF002BUV fastq reads ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 36 single-ended 578976487 Bing Ren, UCSD c90f83267a0b282f7f7f04d8502da1bf SRA:SRR3652573 https://www.encodeproject.org/files/ENCFF002BUV/@@download/ENCFF002BUV.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVA fastq reads ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 36 single-ended 682798272 Bing Ren, UCSD 6ebfe5276ca5ff086b0999bd6ff5867d SRA:SRR3652570 https://www.encodeproject.org/files/ENCFF002BVA/@@download/ENCFF002BVA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BUX fastq reads ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 629291385 Bing Ren, UCSD 4aa6bcf367bbe96ab30fff9198ee9995 SRA:SRR3652574 https://www.encodeproject.org/files/ENCFF002BUX/@@download/ENCFF002BUX.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BUT fastq reads ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 687770065 Bing Ren, UCSD 232a1453ceec545798680cff5319b8e3 SRA:SRR3652571 https://www.encodeproject.org/files/ENCFF002BUT/@@download/ENCFF002BUT.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF105XDK fastq reads ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 3 50 single-ended 888680084 Bing Ren, UCSD bc7bf7c031206ec3e65c920cad67bd81 SRA:SRR3652575 https://www.encodeproject.org/files/ENCFF105XDK/@@download/ENCFF105XDK.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF067HMY fastq reads ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 3 50 single-ended 624130329 Bing Ren, UCSD 556ee3b9f7565cdb72ad45694044b067 SRA:SRR3652572 https://www.encodeproject.org/files/ENCFF067HMY/@@download/ENCFF067HMY.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF626JBF bam alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BUV, ENCFF002BUX, ENCFF105XDK, ENCFF806TVZ 1359905290 ENCODE Processing Pipeline 1103134a611599edcdae742616743b11 https://www.encodeproject.org/files/ENCFF626JBF/@@download/ENCFF626JBF.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF690LJE bam alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue 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depth, control insufficient read depth ENCFF559EBY bed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF626JBF 2304353 ENCODE Processing Pipeline 19bc2d56eace6e2784e8b832d8d751ca https://www.encodeproject.org/files/ENCFF559EBY/@@download/ENCFF559EBY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF129EDF bigBed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF534FIS 3748125 ENCODE Processing Pipeline 6b223580ab72cb3df93d2b89290c0f67 https://www.encodeproject.org/files/ENCFF129EDF/@@download/ENCFF129EDF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF654HVT bigBed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF675EGY 4035488 ENCODE Processing Pipeline 917c25ee2826cc0759b39ceef8ff6933 https://www.encodeproject.org/files/ENCFF654HVT/@@download/ENCFF654HVT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF675EGY bed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF626JBF, ENCFF690LJE 1673848 ENCODE Processing Pipeline f18e01d546f87339338884358cb9216c https://www.encodeproject.org/files/ENCFF675EGY/@@download/ENCFF675EGY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF686GYF bigBed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF559EBY 4336328 ENCODE Processing Pipeline 0dd8a7ac0aa9b318a24f2088c61c5256 https://www.encodeproject.org/files/ENCFF686GYF/@@download/ENCFF686GYF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF288ETS bigWig signal p-value ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF690LJE 502636041 ENCODE Processing Pipeline c88c7893db22630b0d84a442c4825f44 https://www.encodeproject.org/files/ENCFF288ETS/@@download/ENCFF288ETS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF910QPE bigWig signal p-value ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF626JBF 511519233 ENCODE Processing Pipeline 673b179fe7556c9b994665b011e2e4ad https://www.encodeproject.org/files/ENCFF910QPE/@@download/ENCFF910QPE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF402DUX bigWig signal p-value ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF626JBF, ENCFF690LJE 561036954 ENCODE Processing Pipeline 5cd26f55ed1e909494b296c315143913 https://www.encodeproject.org/files/ENCFF402DUX/@@download/ENCFF402DUX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF457ENF bigWig fold change over control ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF690LJE 477613097 ENCODE Processing Pipeline bb68a40180d96467d277501696314d88 https://www.encodeproject.org/files/ENCFF457ENF/@@download/ENCFF457ENF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF688JKZ bigWig fold change over control ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF626JBF 510646636 ENCODE Processing Pipeline 5a18f621ee2d4eedc03db788385c04d5 https://www.encodeproject.org/files/ENCFF688JKZ/@@download/ENCFF688JKZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF273OLC bigWig fold change over control ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF626JBF, ENCFF690LJE 805856244 ENCODE Processing Pipeline b67c352b684b0e920407cd6564461de7 https://www.encodeproject.org/files/ENCFF273OLC/@@download/ENCFF273OLC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF631SHE bed narrowPeak replicated peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF534FIS, ENCFF559EBY, ENCFF675EGY 1528076 ENCODE Processing Pipeline 74431aecdeb5d6f039e74bdce860aa0c https://www.encodeproject.org/files/ENCFF631SHE/@@download/ENCFF631SHE.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF563KUD bigBed narrowPeak replicated peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF631SHE 3214944 ENCODE Processing Pipeline db8249fe91eda0a0d71c5b063bbd2a01 https://www.encodeproject.org/files/ENCFF563KUD/@@download/ENCFF563KUD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF761TDA bam unfiltered alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BUV, ENCFF002BUX, ENCFF018NEO, ENCFF105XDK 2371433192 ENCODE Processing Pipeline 07d739cd886d4b321e9ca70684777c01 https://www.encodeproject.org/files/ENCFF761TDA/@@download/ENCFF761TDA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF336NMW bam unfiltered alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUT, ENCFF002BVA, ENCFF018NEO, ENCFF067HMY 2305405130 ENCODE Processing Pipeline 4b589a48684ebfc5cf9117c8761e5c27 https://www.encodeproject.org/files/ENCFF336NMW/@@download/ENCFF336NMW.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF292KNL bam alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUT, ENCFF002BVA, ENCFF018NEO, ENCFF067HMY 1110902832 ENCODE Processing Pipeline 50572a2016f878fa01153443c5f88ffb https://www.encodeproject.org/files/ENCFF292KNL/@@download/ENCFF292KNL.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF204FLA bam alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BUV, ENCFF002BUX, ENCFF018NEO, ENCFF105XDK 1181928408 ENCODE Processing Pipeline c979b8c4caefbb144ada7007f3d7a680 https://www.encodeproject.org/files/ENCFF204FLA/@@download/ENCFF204FLA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF792KOB bed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292KNL, ENCFF856WFI, ENCFF886TCK 2224427 ENCODE Processing Pipeline 94d2fa15f101705e55a9c52bcec5abcf https://www.encodeproject.org/files/ENCFF792KOB/@@download/ENCFF792KOB.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF664VTK bed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204FLA, ENCFF856WFI, ENCFF886TCK 2274167 ENCODE Processing Pipeline 93a6809542c69e7feb8053097605be84 https://www.encodeproject.org/files/ENCFF664VTK/@@download/ENCFF664VTK.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF737FKR bed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204FLA, ENCFF292KNL, ENCFF856WFI, ENCFF886TCK 1768753 ENCODE Processing Pipeline d2cbbaadff75c7770bfa0fed730e1bf2 https://www.encodeproject.org/files/ENCFF737FKR/@@download/ENCFF737FKR.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF641DWJ bigBed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF792KOB 4291166 ENCODE Processing Pipeline 4daec8116574a5b579d38167754bddd3 https://www.encodeproject.org/files/ENCFF641DWJ/@@download/ENCFF641DWJ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF403YDY bigBed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF664VTK 4298124 ENCODE Processing Pipeline 9f664544c8986a25769efaf45ccdf6cb https://www.encodeproject.org/files/ENCFF403YDY/@@download/ENCFF403YDY.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF026MKV bigBed narrowPeak peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF737FKR 4238903 ENCODE Processing Pipeline 2d506ab5e03f717eb3554542162fdaa4 https://www.encodeproject.org/files/ENCFF026MKV/@@download/ENCFF026MKV.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF186YLZ bigWig signal p-value ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292KNL, ENCFF856WFI, ENCFF886TCK 460353121 ENCODE Processing Pipeline e3c51c011f8a73a443c0960c1d76d9dd https://www.encodeproject.org/files/ENCFF186YLZ/@@download/ENCFF186YLZ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF714DWR bigWig signal p-value ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204FLA, ENCFF856WFI, ENCFF886TCK 410737747 ENCODE Processing Pipeline e8d54a559b2e93d0c08dbe641b8de873 https://www.encodeproject.org/files/ENCFF714DWR/@@download/ENCFF714DWR.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF416VLY bigWig signal p-value ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204FLA, ENCFF292KNL, ENCFF856WFI, ENCFF886TCK 566703361 ENCODE Processing Pipeline 180b937a3913175244e47af7ce3bee78 https://www.encodeproject.org/files/ENCFF416VLY/@@download/ENCFF416VLY.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF464EAN bigWig fold change over control ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292KNL, ENCFF856WFI, ENCFF886TCK 473112205 ENCODE Processing Pipeline a5a5511683102c80018898a953f3a0d9 https://www.encodeproject.org/files/ENCFF464EAN/@@download/ENCFF464EAN.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF727LWH bigWig fold change over control ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204FLA, ENCFF856WFI, ENCFF886TCK 502526265 ENCODE Processing Pipeline f5e5392c62d33652d708198e650954d3 https://www.encodeproject.org/files/ENCFF727LWH/@@download/ENCFF727LWH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF477XJO bigWig fold change over control ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204FLA, ENCFF292KNL, ENCFF856WFI, ENCFF886TCK 782039885 ENCODE Processing Pipeline 147aa0cb9f517271196c2c47dc285f34 https://www.encodeproject.org/files/ENCFF477XJO/@@download/ENCFF477XJO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF439XWM bed narrowPeak replicated peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF664VTK, ENCFF737FKR, ENCFF792KOB 1623640 ENCODE Processing Pipeline a0281d5171f1ce0fd3380c8141214bc2 https://www.encodeproject.org/files/ENCFF439XWM/@@download/ENCFF439XWM.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF654JHH bigBed narrowPeak replicated peaks ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF439XWM 3389909 ENCODE Processing Pipeline d534db0edd643390b899941cfd4f31ee https://www.encodeproject.org/files/ENCFF654JHH/@@download/ENCFF654JHH.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AFN fastq reads ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1426312813 Bing Ren, UCSD 3b894e22e2c9d6b29d666db2be9fee72 SRA:SRR3653200 https://www.encodeproject.org/files/ENCFF002AFN/@@download/ENCFF002AFN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARC/ released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF002AFT fastq reads ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1190633560 Bing Ren, UCSD 34067b5652a9713e64b7af0806f42087 SRA:SRR3653199 https://www.encodeproject.org/files/ENCFF002AFT/@@download/ENCFF002AFT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARH/ released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, inconsistent control read length, low read length ENCFF746LQX bam alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFT, ENCFF806TVZ 925526376 ENCODE Processing Pipeline f11f439aeaf8521c12979ac5db750139 https://www.encodeproject.org/files/ENCFF746LQX/@@download/ENCFF746LQX.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF332AGO bam alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFN, ENCFF806TVZ 1118086864 ENCODE Processing Pipeline d71c5b919b6c42c380e3cd2c30342aa0 https://www.encodeproject.org/files/ENCFF332AGO/@@download/ENCFF332AGO.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF710QIA bed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF332AGO, ENCFF746LQX, ENCFF989KGL 1682338 ENCODE Processing Pipeline e86051b4f9823e013a6d86822513c206 https://www.encodeproject.org/files/ENCFF710QIA/@@download/ENCFF710QIA.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF490VKT bed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF332AGO, ENCFF989KGL 1294512 ENCODE Processing Pipeline 34b4e9fca0de49f3d007e50ad294ec90 https://www.encodeproject.org/files/ENCFF490VKT/@@download/ENCFF490VKT.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF044IGI bigBed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF455WAY 3237943 ENCODE Processing Pipeline bb7a1fb91be55aacc632ba5a9b418cdc https://www.encodeproject.org/files/ENCFF044IGI/@@download/ENCFF044IGI.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF466RGZ bigBed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF490VKT 3568260 ENCODE Processing Pipeline 09104fb3dd657f286368c7e4b7e0eb43 https://www.encodeproject.org/files/ENCFF466RGZ/@@download/ENCFF466RGZ.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF455WAY bed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF746LQX, ENCFF989KGL 1516368 ENCODE Processing Pipeline 85650c95743fc4e3fd950f8f957e4d7d https://www.encodeproject.org/files/ENCFF455WAY/@@download/ENCFF455WAY.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF592TDY bigBed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF710QIA 4480113 ENCODE Processing Pipeline 1375fb96b01ad2a0ec040ebaa56994e7 https://www.encodeproject.org/files/ENCFF592TDY/@@download/ENCFF592TDY.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF803LZT bigWig signal p-value ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF332AGO, ENCFF989KGL 557671965 ENCODE Processing Pipeline bd1b7147d554310c665ff6759373eb7c https://www.encodeproject.org/files/ENCFF803LZT/@@download/ENCFF803LZT.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF601CKB bigWig signal p-value ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF746LQX, ENCFF989KGL 470965673 ENCODE Processing Pipeline 8c6e496f9325427ba5237d6520bfd3fc https://www.encodeproject.org/files/ENCFF601CKB/@@download/ENCFF601CKB.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF751DYT bigWig fold change over control ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF746LQX, ENCFF989KGL 522002357 ENCODE Processing Pipeline b90bb8291882996b40cc38a03b0d42b2 https://www.encodeproject.org/files/ENCFF751DYT/@@download/ENCFF751DYT.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF759ONF bigWig signal p-value ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF332AGO, ENCFF746LQX, ENCFF989KGL 794411177 ENCODE Processing Pipeline 103e01f5ad6d3e8e63d3b82897675d0f https://www.encodeproject.org/files/ENCFF759ONF/@@download/ENCFF759ONF.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF783DJZ bigWig fold change over control ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF332AGO, ENCFF989KGL 461973579 ENCODE Processing Pipeline ce2b6774fceb5640aa5088d56aa0869e https://www.encodeproject.org/files/ENCFF783DJZ/@@download/ENCFF783DJZ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF521YBC bigWig fold change over control ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF332AGO, ENCFF746LQX, ENCFF989KGL 790440209 ENCODE Processing Pipeline 94f38bba16c446795dfa7ae218512ae3 https://www.encodeproject.org/files/ENCFF521YBC/@@download/ENCFF521YBC.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF278FUC bed narrowPeak replicated peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF455WAY, ENCFF490VKT, ENCFF710QIA 1152042 ENCODE Processing Pipeline 5868742adf31605f6dce9fc3f6b37129 https://www.encodeproject.org/files/ENCFF278FUC/@@download/ENCFF278FUC.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF895ZPB bigBed narrowPeak replicated peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF278FUC 2589604 ENCODE Processing Pipeline f6dbbb7f5ee67c2381121de699eb2a8d https://www.encodeproject.org/files/ENCFF895ZPB/@@download/ENCFF895ZPB.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF138XUE bam unfiltered alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFT, ENCFF018NEO 1424719430 ENCODE Processing Pipeline 8cb47d4ad6086be8642584313bdae979 https://www.encodeproject.org/files/ENCFF138XUE/@@download/ENCFF138XUE.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF935LYV bam unfiltered alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFN, ENCFF018NEO 1300425199 ENCODE Processing Pipeline a83a2835bc9341cbd9406c085e9fe95f https://www.encodeproject.org/files/ENCFF935LYV/@@download/ENCFF935LYV.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF956DZC bam alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFT, ENCFF018NEO 925272847 ENCODE Processing Pipeline 65096021ad48f18fc2c3c66175a6f089 https://www.encodeproject.org/files/ENCFF956DZC/@@download/ENCFF956DZC.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF513KCC bam alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFN, ENCFF018NEO 865820642 ENCODE Processing Pipeline 3b469c4bbbd83a5b91fdcdc2bb149e09 https://www.encodeproject.org/files/ENCFF513KCC/@@download/ENCFF513KCC.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF388BOS bed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF513KCC, ENCFF782YCY, ENCFF922FWV 1580893 ENCODE Processing Pipeline a4a1b739b2c2b6162c8c3173b1312e28 https://www.encodeproject.org/files/ENCFF388BOS/@@download/ENCFF388BOS.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF003LQQ bed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF782YCY, ENCFF922FWV, ENCFF956DZC 1501651 ENCODE Processing Pipeline 0d3bd53988d8fe06f59b11bb5043a240 https://www.encodeproject.org/files/ENCFF003LQQ/@@download/ENCFF003LQQ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF576JMN bed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF513KCC, ENCFF782YCY, ENCFF922FWV, ENCFF956DZC 1671671 ENCODE Processing Pipeline 1cd8bc6e59f38eb400ecee049cf3e08c https://www.encodeproject.org/files/ENCFF576JMN/@@download/ENCFF576JMN.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF315JRY bigBed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF388BOS 3421618 ENCODE Processing Pipeline 5247f05e9de9d7fb728f698e61b4b006 https://www.encodeproject.org/files/ENCFF315JRY/@@download/ENCFF315JRY.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF949QRD bigBed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF003LQQ 4075287 ENCODE Processing Pipeline c3e28db73c0898c33cf2b2675b30dc78 https://www.encodeproject.org/files/ENCFF949QRD/@@download/ENCFF949QRD.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF706LTM bigBed narrowPeak peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF576JMN 4459087 ENCODE Processing Pipeline 0876ce18aa226910c6c02f6f7a8c236a https://www.encodeproject.org/files/ENCFF706LTM/@@download/ENCFF706LTM.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF951CVM bigWig signal p-value ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF513KCC, ENCFF782YCY, ENCFF922FWV 510417313 ENCODE Processing Pipeline 7973612d9e2dc3233ac0b5bea0466483 https://www.encodeproject.org/files/ENCFF951CVM/@@download/ENCFF951CVM.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF424JPD bigWig signal p-value ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF782YCY, ENCFF922FWV, ENCFF956DZC 530894626 ENCODE Processing Pipeline d90257a935b981d5ee8e1595ab68a906 https://www.encodeproject.org/files/ENCFF424JPD/@@download/ENCFF424JPD.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF697REJ bigWig signal p-value ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF513KCC, ENCFF782YCY, ENCFF922FWV, ENCFF956DZC 600979778 ENCODE Processing Pipeline 9a3c15c00084bc88475cb2d74ad11037 https://www.encodeproject.org/files/ENCFF697REJ/@@download/ENCFF697REJ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF973SLH bigWig fold change over control ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF513KCC, ENCFF782YCY, ENCFF922FWV 454817778 ENCODE Processing Pipeline 5742df2087ac89c73d93066f6919b5df https://www.encodeproject.org/files/ENCFF973SLH/@@download/ENCFF973SLH.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF787JSR bigWig fold change over control ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF782YCY, ENCFF922FWV, ENCFF956DZC 512798771 ENCODE Processing Pipeline 4461fadb89d27ec4bcef4780bf674f21 https://www.encodeproject.org/files/ENCFF787JSR/@@download/ENCFF787JSR.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF924XGB bigWig fold change over control ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF513KCC, ENCFF782YCY, ENCFF922FWV, ENCFF956DZC 788181106 ENCODE Processing Pipeline a5813fef82074d321080fcce7193ade0 https://www.encodeproject.org/files/ENCFF924XGB/@@download/ENCFF924XGB.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF583HBA bed narrowPeak replicated peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF003LQQ, ENCFF388BOS, ENCFF576JMN 1211570 ENCODE Processing Pipeline 5a2856aed0f443628ddee407e9f12629 https://www.encodeproject.org/files/ENCFF583HBA/@@download/ENCFF583HBA.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF779CNP bigBed narrowPeak replicated peaks ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF583HBA 2686460 ENCODE Processing Pipeline 69ba98e429695c00c11ac6cbe64a5e28 https://www.encodeproject.org/files/ENCFF779CNP/@@download/ENCFF779CNP.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF198CRA fastq reads ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2091379959 Bing Ren, UCSD 9c933d99883efbb0b373c016c91ec1d1 SRA:SRR3651853 https://www.encodeproject.org/files/ENCFF198CRA/@@download/ENCFF198CRA.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF643UJF fastq reads ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2391373636 Bing Ren, UCSD 0e872d5bfacc5165d7691a4fa65c8f25 SRA:SRR3651854 https://www.encodeproject.org/files/ENCFF643UJF/@@download/ENCFF643UJF.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF174JCT bam alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF198CRA, ENCFF806TVZ 1528810151 ENCODE Processing Pipeline 9db8c3603c6f30bf792b225a8757f8f4 https://www.encodeproject.org/files/ENCFF174JCT/@@download/ENCFF174JCT.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF898GNA bam alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF643UJF, ENCFF806TVZ 1762877676 ENCODE Processing Pipeline a8c73298fd6eff31dc66483b7f0955cc https://www.encodeproject.org/files/ENCFF898GNA/@@download/ENCFF898GNA.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF721UGK bed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF174JCT, ENCFF476GUX, ENCFF592WTG, ENCFF898GNA 662942 ENCODE Processing Pipeline c80a8b764dd44c3f34a1e22239e2da60 https://www.encodeproject.org/files/ENCFF721UGK/@@download/ENCFF721UGK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF723FYN bed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF592WTG, ENCFF898GNA 587666 ENCODE Processing Pipeline 40724b9a99ef0efe62e60ac016486c3d https://www.encodeproject.org/files/ENCFF723FYN/@@download/ENCFF723FYN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF955BLY bed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF174JCT, ENCFF476GUX 582083 ENCODE Processing Pipeline e92cb74c9cb2c7b625dd1ff8bb8c45d0 https://www.encodeproject.org/files/ENCFF955BLY/@@download/ENCFF955BLY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF088ITX bigBed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF721UGK 2000977 ENCODE Processing Pipeline 1987f02caaf08d9528861f020eed95df https://www.encodeproject.org/files/ENCFF088ITX/@@download/ENCFF088ITX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF279YJL bigBed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF723FYN 1877670 ENCODE Processing Pipeline 0b7c8f157bf08d96dfa0b9509bef86eb https://www.encodeproject.org/files/ENCFF279YJL/@@download/ENCFF279YJL.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF886ABC bigBed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF955BLY 1870575 ENCODE Processing Pipeline 7dee0bc99139a26a5671c751d8d364df https://www.encodeproject.org/files/ENCFF886ABC/@@download/ENCFF886ABC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF897VMT bigWig signal p-value ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF592WTG, ENCFF898GNA 535241330 ENCODE Processing Pipeline e8e304a0a1ada51386cf4e8b7379d4a3 https://www.encodeproject.org/files/ENCFF897VMT/@@download/ENCFF897VMT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF053CRW bigWig signal p-value ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF174JCT, ENCFF476GUX 464573114 ENCODE Processing Pipeline 147dd93217d671380046f341c0965d89 https://www.encodeproject.org/files/ENCFF053CRW/@@download/ENCFF053CRW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF250INT bigWig signal p-value ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF174JCT, ENCFF476GUX, ENCFF592WTG, ENCFF898GNA 824734453 ENCODE Processing Pipeline 9cb57eebb94386f340631f16a2f4c268 https://www.encodeproject.org/files/ENCFF250INT/@@download/ENCFF250INT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF443CQM bigWig fold change over control ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF592WTG, ENCFF898GNA 594678838 ENCODE Processing Pipeline 99ee15d492710661ba190af28a14ca5d https://www.encodeproject.org/files/ENCFF443CQM/@@download/ENCFF443CQM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF304YMU bigWig fold change over control ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF174JCT, ENCFF476GUX 515235608 ENCODE Processing Pipeline 8d72ed6593986f59115805cbd8a49b98 https://www.encodeproject.org/files/ENCFF304YMU/@@download/ENCFF304YMU.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF319PIR bigWig fold change over control ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF174JCT, ENCFF476GUX, ENCFF592WTG, ENCFF898GNA 1072166609 ENCODE Processing Pipeline 34027b443c2c4ae6544b48d086af1ca4 https://www.encodeproject.org/files/ENCFF319PIR/@@download/ENCFF319PIR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF558EQZ bed narrowPeak replicated peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF721UGK, ENCFF723FYN, ENCFF955BLY 744567 ENCODE Processing Pipeline 2b381bc9762c9bd7be1988ff155008b7 https://www.encodeproject.org/files/ENCFF558EQZ/@@download/ENCFF558EQZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF590RWN bigBed narrowPeak replicated peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF558EQZ 1716537 ENCODE Processing Pipeline c8da3484c067c75252137223f5f440ff https://www.encodeproject.org/files/ENCFF590RWN/@@download/ENCFF590RWN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF347REG bam unfiltered alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF643UJF 2640457032 ENCODE Processing Pipeline 6d60c486754c6c6cbf7c0fe86ba9beb6 https://www.encodeproject.org/files/ENCFF347REG/@@download/ENCFF347REG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF749ZEF bam unfiltered alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF198CRA 2290408091 ENCODE Processing Pipeline 280697e86b7837f68e523c65a2b726dc https://www.encodeproject.org/files/ENCFF749ZEF/@@download/ENCFF749ZEF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF407ALD bam alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF198CRA 1528624457 ENCODE Processing Pipeline 85421345dfd68450b402ad0ad79d4e2e https://www.encodeproject.org/files/ENCFF407ALD/@@download/ENCFF407ALD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF262SUZ bam alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF643UJF 1762600579 ENCODE Processing Pipeline 7226dd8e93d5b88b0bff7915402766bb https://www.encodeproject.org/files/ENCFF262SUZ/@@download/ENCFF262SUZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF688RBN bed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF262SUZ, ENCFF627RIT 595123 ENCODE Processing Pipeline 8ef2aee75c769259bbef08cb869ac80e https://www.encodeproject.org/files/ENCFF688RBN/@@download/ENCFF688RBN.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF061TOC bed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF262SUZ, ENCFF285XPR, ENCFF407ALD, ENCFF627RIT 669627 ENCODE Processing Pipeline 460dccae80e990c436b6584a807dc380 https://www.encodeproject.org/files/ENCFF061TOC/@@download/ENCFF061TOC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF222GYC bed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF407ALD 589473 ENCODE Processing Pipeline cb75fb9657d6e85fee9c56757f91c21b https://www.encodeproject.org/files/ENCFF222GYC/@@download/ENCFF222GYC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF536SES bigBed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF688RBN 1897040 ENCODE Processing Pipeline cd5909d32618adbb2620bb2b1043c501 https://www.encodeproject.org/files/ENCFF536SES/@@download/ENCFF536SES.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF026WKA bigBed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF222GYC 1884668 ENCODE Processing Pipeline aef77386aeb1adce230755230526d719 https://www.encodeproject.org/files/ENCFF026WKA/@@download/ENCFF026WKA.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF303YWC bigBed narrowPeak peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF061TOC 2013823 ENCODE Processing Pipeline c8a168ce9fc835a74e8cf89f624330d3 https://www.encodeproject.org/files/ENCFF303YWC/@@download/ENCFF303YWC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF600OIH bigWig signal p-value ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF262SUZ, ENCFF627RIT 588003939 ENCODE Processing Pipeline 5e88841104ba3bfe2a8acd97f5c8a69f https://www.encodeproject.org/files/ENCFF600OIH/@@download/ENCFF600OIH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF454UQO bigWig signal p-value ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF407ALD 647514553 ENCODE Processing Pipeline bbf42304aafe01223184670e0469a2de https://www.encodeproject.org/files/ENCFF454UQO/@@download/ENCFF454UQO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF152XHB bigWig signal p-value ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF262SUZ, ENCFF285XPR, ENCFF407ALD, ENCFF627RIT 887103665 ENCODE Processing Pipeline 112777f968fb125006a5fea5d0c48c0c https://www.encodeproject.org/files/ENCFF152XHB/@@download/ENCFF152XHB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF985OOG bigWig fold change over control ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF262SUZ, ENCFF627RIT 619381553 ENCODE Processing Pipeline 6651102a537a29336a19c3fe7a01348b https://www.encodeproject.org/files/ENCFF985OOG/@@download/ENCFF985OOG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF997YGS bigWig fold change over control ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF407ALD 564721988 ENCODE Processing Pipeline 2914176304396e1741660f327e01db31 https://www.encodeproject.org/files/ENCFF997YGS/@@download/ENCFF997YGS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF354BAJ bigWig fold change over control ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF262SUZ, ENCFF285XPR, ENCFF407ALD, ENCFF627RIT 1083352650 ENCODE Processing Pipeline 65b3c6261dc5b0ed17ca07009dfde902 https://www.encodeproject.org/files/ENCFF354BAJ/@@download/ENCFF354BAJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF088HYM bigBed narrowPeak replicated peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF207JEH 1714063 ENCODE Processing Pipeline bc64481d074a39b090e676ddf83921a5 https://www.encodeproject.org/files/ENCFF088HYM/@@download/ENCFF088HYM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF207JEH bed narrowPeak replicated peaks ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF061TOC, ENCFF222GYC, ENCFF688RBN 740656 ENCODE Processing Pipeline 2ccc863e55caa7138eb7de90920b9379 https://www.encodeproject.org/files/ENCFF207JEH/@@download/ENCFF207JEH.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001KES bam alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KFG 1909569455 Bing Ren, UCSD 3ceb727fdc1434cb75740b04148de288 https://www.encodeproject.org/files/ENCFF001KES/@@download/ENCFF001KES.bam mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KET bigBed broadPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWV 1862661 Bing Ren, UCSD a3ca2934c06693b1b8025a25027eb49a https://www.encodeproject.org/files/ENCFF001KET/@@download/ENCFF001KET.bigBed mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KEV bigWig signal ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 55471596 Bing Ren, UCSD 6057e529921e35700a984e6927cf0fda https://www.encodeproject.org/files/ENCFF001KEV/@@download/ENCFF001KEV.bigWig mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths missing derived_from insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KEW bam alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KFE 1004126424 Bing Ren, UCSD b76c93b1f8a33681a4f6194a981f8143 https://www.encodeproject.org/files/ENCFF001KEW/@@download/ENCFF001KEW.bam mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KFE fastq reads ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1033854067 Bing Ren, UCSD 6fc0c6c3f6d35790c66c9f6dffa14a86 https://www.encodeproject.org/files/ENCFF001KFE/@@download/ENCFF001KFE.fastq.gz Illumina HiSeq 2000 /files/ENCFF659VUB/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF001KFG fastq reads ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1872525618 Bing Ren, UCSD 921f3b2e55677b5d1a137105fc617307 https://www.encodeproject.org/files/ENCFF001KFG/@@download/ENCFF001KFG.fastq.gz Illumina HiSeq 2000 /files/ENCFF071UWJ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF001XWV bed broadPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1097460 Bing Ren, UCSD 2da849633e688c28d3d72a67e07ad96b https://www.encodeproject.org/files/ENCFF001XWV/@@download/ENCFF001XWV.bed.gz mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths missing derived_from insufficient read depth, poor library complexity, control insufficient read depth ENCFF684CJP bam unfiltered alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFG, ENCFF018NEO 2030460622 ENCODE Processing Pipeline 069886885376759b68d492d05f9e191e https://www.encodeproject.org/files/ENCFF684CJP/@@download/ENCFF684CJP.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF780OYN bam unfiltered alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFE, ENCFF018NEO 1008873533 ENCODE Processing Pipeline 4537799c1d31636aef5d574f317730fa https://www.encodeproject.org/files/ENCFF780OYN/@@download/ENCFF780OYN.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF783HMD bam alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFE, ENCFF018NEO 383894936 ENCODE Processing Pipeline d190f023ef236fd0df716f022c7f629e https://www.encodeproject.org/files/ENCFF783HMD/@@download/ENCFF783HMD.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF436YEC bam alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFG, ENCFF018NEO 1299948529 ENCODE Processing Pipeline d68f9b1acbf11071fd01075939b86c84 https://www.encodeproject.org/files/ENCFF436YEC/@@download/ENCFF436YEC.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF059TAF bed narrowPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF436YEC, ENCFF682ICT 3470908 ENCODE Processing Pipeline 672d8c356cdb0d73cf2dfbb91a90c2d4 https://www.encodeproject.org/files/ENCFF059TAF/@@download/ENCFF059TAF.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF203HRB bigWig signal p-value ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF436YEC, ENCFF682ICT 491318679 ENCODE Processing Pipeline d6063424afd7430eed714ca93d3cc72b https://www.encodeproject.org/files/ENCFF203HRB/@@download/ENCFF203HRB.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF535UHH bed narrowPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF318EHA, ENCFF436YEC, ENCFF682ICT, ENCFF783HMD 2937406 ENCODE Processing Pipeline 6da8e1a32e159faba06715c95eec28ab https://www.encodeproject.org/files/ENCFF535UHH/@@download/ENCFF535UHH.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF493EFX bigBed narrowPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF059TAF 9957099 ENCODE Processing Pipeline cda942a7902a1727bca73e89843d19d3 https://www.encodeproject.org/files/ENCFF493EFX/@@download/ENCFF493EFX.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF196TWZ bed narrowPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF318EHA, ENCFF682ICT, ENCFF783HMD 2167760 ENCODE Processing Pipeline c0ec88bb133d6d0026891160b9f69b34 https://www.encodeproject.org/files/ENCFF196TWZ/@@download/ENCFF196TWZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF849PTX bigBed narrowPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF196TWZ 4962874 ENCODE Processing Pipeline 22f50ccfca830324f7223ff0cb09c12b https://www.encodeproject.org/files/ENCFF849PTX/@@download/ENCFF849PTX.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF439CBR bigWig signal p-value ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF318EHA, ENCFF682ICT, ENCFF783HMD 316106416 ENCODE Processing Pipeline 41c66adcf2aba96e0b9ce2993ea339ea https://www.encodeproject.org/files/ENCFF439CBR/@@download/ENCFF439CBR.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF421PQH bigBed narrowPeak peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF535UHH 8367852 ENCODE Processing Pipeline 0c7f6ead505ae9cc143a99c2477c3c7c https://www.encodeproject.org/files/ENCFF421PQH/@@download/ENCFF421PQH.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF273JBE bigWig signal p-value ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF318EHA, ENCFF436YEC, ENCFF682ICT, ENCFF783HMD 483299853 ENCODE Processing Pipeline b4b56df693084f37f4b74cbcf27603d7 https://www.encodeproject.org/files/ENCFF273JBE/@@download/ENCFF273JBE.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF539HTI bigWig fold change over control ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF436YEC, ENCFF682ICT 502549590 ENCODE Processing Pipeline 527bd0534315e7e8c5e759e7cac528c6 https://www.encodeproject.org/files/ENCFF539HTI/@@download/ENCFF539HTI.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF797ZAX bigWig fold change over control ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF318EHA, ENCFF682ICT, ENCFF783HMD 238554666 ENCODE Processing Pipeline 43089a620fc136c5e9fb58635bb90693 https://www.encodeproject.org/files/ENCFF797ZAX/@@download/ENCFF797ZAX.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF899GLT bigWig fold change over control ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF318EHA, ENCFF436YEC, ENCFF682ICT, ENCFF783HMD 622007918 ENCODE Processing Pipeline b725ffd417e78b21948fa2ec3a8a513f https://www.encodeproject.org/files/ENCFF899GLT/@@download/ENCFF899GLT.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF805KAU bigBed narrowPeak replicated peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF067VMS 6762070 ENCODE Processing Pipeline c9ea4839cd8c70be832569dd87e10816 https://www.encodeproject.org/files/ENCFF805KAU/@@download/ENCFF805KAU.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF067VMS bed narrowPeak replicated peaks ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF059TAF, ENCFF196TWZ, ENCFF535UHH 3118123 ENCODE Processing Pipeline b86098aa6f8a9a469979ffa069efa681 https://www.encodeproject.org/files/ENCFF067VMS/@@download/ENCFF067VMS.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF002AKL fastq reads ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1333763298 Bing Ren, UCSD ac4da1fba1a54f9616124a3392337512 SRA:SRR3653201 https://www.encodeproject.org/files/ENCFF002AKL/@@download/ENCFF002AKL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002AKN fastq reads ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1381912303 Bing Ren, UCSD 943818308132418c8edb60477929349c SRA:SRR3653202 https://www.encodeproject.org/files/ENCFF002AKN/@@download/ENCFF002AKN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APR/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity ENCFF311KQT bam alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKL, ENCFF806TVZ 970352602 ENCODE Processing Pipeline bc65643a9c33bc547cf4d2f0f9cd53e9 https://www.encodeproject.org/files/ENCFF311KQT/@@download/ENCFF311KQT.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF591CMY bam alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKN, ENCFF806TVZ 654567129 ENCODE Processing Pipeline f46112fb78594968b3999904e1dc3876 https://www.encodeproject.org/files/ENCFF591CMY/@@download/ENCFF591CMY.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF562LZN bed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF591CMY, ENCFF893KXG 905771 ENCODE Processing Pipeline 9c5db0a330380dfb4f655d0abbb5b092 https://www.encodeproject.org/files/ENCFF562LZN/@@download/ENCFF562LZN.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF568KZX bed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF311KQT 882998 ENCODE Processing Pipeline 6e87a9c2e49688cb5ed5ce3eef197301 https://www.encodeproject.org/files/ENCFF568KZX/@@download/ENCFF568KZX.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF243XXN bigBed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF562LZN 2837196 ENCODE Processing Pipeline d965796150167f585833231023a9494e https://www.encodeproject.org/files/ENCFF243XXN/@@download/ENCFF243XXN.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF620PJC bed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF311KQT, ENCFF591CMY, ENCFF893KXG 1000710 ENCODE Processing Pipeline 7b3f93ae00e5d0216316036aebd6ba96 https://www.encodeproject.org/files/ENCFF620PJC/@@download/ENCFF620PJC.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF566GZE bigBed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF568KZX 2777958 ENCODE Processing Pipeline f94471a7f19d10bf3a5006e92b4812fc https://www.encodeproject.org/files/ENCFF566GZE/@@download/ENCFF566GZE.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF324LGJ bigBed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF620PJC 3072164 ENCODE Processing Pipeline dbd85bb8b58b4e4dd80dfb348d33e3cb https://www.encodeproject.org/files/ENCFF324LGJ/@@download/ENCFF324LGJ.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF554TUW bigWig signal p-value ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF311KQT 479980489 ENCODE Processing Pipeline e132796a6797d42a899a8a894f13cb93 https://www.encodeproject.org/files/ENCFF554TUW/@@download/ENCFF554TUW.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF293NUR bigWig signal p-value ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF591CMY, ENCFF893KXG 294424083 ENCODE Processing Pipeline beb1920b4711cdc50b5b3270054e9110 https://www.encodeproject.org/files/ENCFF293NUR/@@download/ENCFF293NUR.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF998BRJ bigWig signal p-value ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF311KQT, ENCFF591CMY, ENCFF893KXG 614986051 ENCODE Processing Pipeline c87909da3866f01dd820c302270e38c8 https://www.encodeproject.org/files/ENCFF998BRJ/@@download/ENCFF998BRJ.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF465GYR bigWig fold change over control ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF591CMY, ENCFF893KXG 227779219 ENCODE Processing Pipeline 6c63d560af4deb94fee0803b4be318ba https://www.encodeproject.org/files/ENCFF465GYR/@@download/ENCFF465GYR.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF175ZSX bigWig fold change over control ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF311KQT 404369105 ENCODE Processing Pipeline c9e5e7e87c313c87f72ce2525fa6931d https://www.encodeproject.org/files/ENCFF175ZSX/@@download/ENCFF175ZSX.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF309BHO bigWig fold change over control ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF311KQT, ENCFF591CMY, ENCFF893KXG 637992586 ENCODE Processing Pipeline 9bd02d70c932ba25858e65f51290008e https://www.encodeproject.org/files/ENCFF309BHO/@@download/ENCFF309BHO.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF165ATW bed narrowPeak replicated peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF562LZN, ENCFF568KZX, ENCFF620PJC 1024022 ENCODE Processing Pipeline 7fb4be428c7d676ab54c52c51b55f83e https://www.encodeproject.org/files/ENCFF165ATW/@@download/ENCFF165ATW.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF980QTD bigBed narrowPeak replicated peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF165ATW 2313660 ENCODE Processing Pipeline ffc76380c46add0b6626fd30af20ccc5 https://www.encodeproject.org/files/ENCFF980QTD/@@download/ENCFF980QTD.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF465BHK bam unfiltered alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKL, ENCFF018NEO 1410653132 ENCODE Processing Pipeline 239c9a95a07bdc469de223a73e453b6d https://www.encodeproject.org/files/ENCFF465BHK/@@download/ENCFF465BHK.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF715DAH bam unfiltered alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKN, ENCFF018NEO 1069333158 ENCODE Processing Pipeline 966cffdcf5626c08b9c592836b47817c https://www.encodeproject.org/files/ENCFF715DAH/@@download/ENCFF715DAH.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF806SME bam alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKL, ENCFF018NEO 970252361 ENCODE Processing Pipeline 0c520ed4abc71effcc55cb7151c4bc16 https://www.encodeproject.org/files/ENCFF806SME/@@download/ENCFF806SME.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF807XYN bam alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKN, ENCFF018NEO 520949601 ENCODE Processing Pipeline 7d64644e8333643efdaeeea024d613a4 https://www.encodeproject.org/files/ENCFF807XYN/@@download/ENCFF807XYN.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF817SVR bed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF806SME, ENCFF921XQX 882421 ENCODE Processing Pipeline 154fd32c776bc70efa7b04a35c585689 https://www.encodeproject.org/files/ENCFF817SVR/@@download/ENCFF817SVR.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF860OWA bed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF806SME, ENCFF807XYN, ENCFF921XQX 1018982 ENCODE Processing Pipeline 5d3dfdcefe07c36692bd9f8694d12a95 https://www.encodeproject.org/files/ENCFF860OWA/@@download/ENCFF860OWA.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF694WHI bed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF807XYN 910122 ENCODE Processing Pipeline 1c13bedc90e14745ef843c6ad158881d https://www.encodeproject.org/files/ENCFF694WHI/@@download/ENCFF694WHI.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF147AQU bigBed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF694WHI 2838409 ENCODE Processing Pipeline 54c2466663383068e19b7bb272fb9804 https://www.encodeproject.org/files/ENCFF147AQU/@@download/ENCFF147AQU.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF721WCY bigBed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF817SVR 2774322 ENCODE Processing Pipeline 0aee0e1dd3f2ca74ff3425ea5d403c51 https://www.encodeproject.org/files/ENCFF721WCY/@@download/ENCFF721WCY.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF360YMC bigBed narrowPeak peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF860OWA 3119958 ENCODE Processing Pipeline a8590cf5924a0b3b14e7f2b2efa5748f https://www.encodeproject.org/files/ENCFF360YMC/@@download/ENCFF360YMC.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF070YLN bigWig signal p-value ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF806SME, ENCFF921XQX 378057243 ENCODE Processing Pipeline 2ff49437fbf81e8f43176684fc6c295e https://www.encodeproject.org/files/ENCFF070YLN/@@download/ENCFF070YLN.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF898UQX bigWig signal p-value ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF807XYN 339104171 ENCODE Processing Pipeline d01fb879c7af5dee5e889cd7f8aff70b https://www.encodeproject.org/files/ENCFF898UQX/@@download/ENCFF898UQX.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF984GLX bigWig signal p-value ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF806SME, ENCFF807XYN, ENCFF921XQX 628185982 ENCODE Processing Pipeline 30537f75bf24ef3279063184a7596750 https://www.encodeproject.org/files/ENCFF984GLX/@@download/ENCFF984GLX.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF805FTY bigWig fold change over control ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF806SME, ENCFF921XQX 399342638 ENCODE Processing Pipeline 0db3155fa386d79753b6e83e5b0a775e https://www.encodeproject.org/files/ENCFF805FTY/@@download/ENCFF805FTY.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF921AHT bigWig fold change over control ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF807XYN 223256196 ENCODE Processing Pipeline 2fa456f9f6128a4832dd05d125e5883f https://www.encodeproject.org/files/ENCFF921AHT/@@download/ENCFF921AHT.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF911YHS bigWig fold change over control ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF806SME, ENCFF807XYN, ENCFF921XQX 679534617 ENCODE Processing Pipeline c5286be27892947603934515cddbaaee https://www.encodeproject.org/files/ENCFF911YHS/@@download/ENCFF911YHS.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF006AMD bigBed narrowPeak replicated peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF928CNU 2340221 ENCODE Processing Pipeline cd2a2f117fe6739a0efb3917b5eaecc7 https://www.encodeproject.org/files/ENCFF006AMD/@@download/ENCFF006AMD.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF928CNU bed narrowPeak replicated peaks ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF694WHI, ENCFF817SVR, ENCFF860OWA 1049725 ENCODE Processing Pipeline 7fadff8999a27ef25bb9f043671aaac4 https://www.encodeproject.org/files/ENCFF928CNU/@@download/ENCFF928CNU.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF371GMR fastq reads ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1475528784 Bing Ren, UCSD c768fd5b240d6684dd63fb7e5974dd7e SRA:SRR3652936 https://www.encodeproject.org/files/ENCFF371GMR/@@download/ENCFF371GMR.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/, /files/ENCFF961WKK/ released moderate library complexity, mild to moderate bottlenecking ENCFF751BHL fastq reads ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1625651992 Bing Ren, UCSD 8907872e12f2de1b194033b714dbd487 SRA:SRR3652935 https://www.encodeproject.org/files/ENCFF751BHL/@@download/ENCFF751BHL.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released moderate library complexity, mild to moderate bottlenecking ENCFF882GPM bam alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF751BHL, ENCFF806TVZ 1325149680 ENCODE Processing Pipeline 8f498080bbda4ecf57a84febc1c4c681 https://www.encodeproject.org/files/ENCFF882GPM/@@download/ENCFF882GPM.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF524RYH bam alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF371GMR, ENCFF806TVZ 1238295747 ENCODE Processing Pipeline b5b9ed8a8d4f2961418f753d8dc9f24e https://www.encodeproject.org/files/ENCFF524RYH/@@download/ENCFF524RYH.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF698QUY bigWig signal p-value ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF524RYH 623235204 ENCODE Processing Pipeline bf6799b8c8fc17bc13222731857498c5 https://www.encodeproject.org/files/ENCFF698QUY/@@download/ENCFF698QUY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF867YVR bed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF524RYH, ENCFF882GPM 2247454 ENCODE Processing Pipeline 4d7c1a461751fed116abca0b22bc009c https://www.encodeproject.org/files/ENCFF867YVR/@@download/ENCFF867YVR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF721GKX bed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF882GPM 1830046 ENCODE Processing Pipeline 4e1f9519a703205cce73abb2c3bf4ddb https://www.encodeproject.org/files/ENCFF721GKX/@@download/ENCFF721GKX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF841IPB bigBed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF867YVR 4867225 ENCODE Processing Pipeline 6e3952537a25dd7c173308c6f70dd799 https://www.encodeproject.org/files/ENCFF841IPB/@@download/ENCFF841IPB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF080UBG bed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF524RYH 1577432 ENCODE Processing Pipeline ec79d2fe5bac7d6110e0fb8d9004b20d https://www.encodeproject.org/files/ENCFF080UBG/@@download/ENCFF080UBG.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF972HZL bigBed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF080UBG 3623759 ENCODE Processing Pipeline ee97977ed281512b54018c9034ddbdc4 https://www.encodeproject.org/files/ENCFF972HZL/@@download/ENCFF972HZL.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF237JIW bigBed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF721GKX 4119719 ENCODE Processing Pipeline 070a57a2a8790b3f644e68d53f53fd0b https://www.encodeproject.org/files/ENCFF237JIW/@@download/ENCFF237JIW.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF128AGN bigWig signal p-value ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF524RYH, ENCFF882GPM 1033899571 ENCODE Processing Pipeline 31e1c2a7b0f0ddde86e72ec9f50b84d5 https://www.encodeproject.org/files/ENCFF128AGN/@@download/ENCFF128AGN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF304PZO bigWig signal p-value ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF882GPM 619717735 ENCODE Processing Pipeline 42d07cb388cbd6d125b3bb6012280dd1 https://www.encodeproject.org/files/ENCFF304PZO/@@download/ENCFF304PZO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF762WFY bigWig fold change over control ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF524RYH 600240132 ENCODE Processing Pipeline 6ec818070d7a28a77a6ab02368d60f6e https://www.encodeproject.org/files/ENCFF762WFY/@@download/ENCFF762WFY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF950WYU bigWig fold change over control ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF882GPM 614994365 ENCODE Processing Pipeline aa0120892427464d300d0b08b791a8c1 https://www.encodeproject.org/files/ENCFF950WYU/@@download/ENCFF950WYU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF826UVN bigWig fold change over control ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF524RYH, ENCFF882GPM 1103821900 ENCODE Processing Pipeline 0fa4830a8bd47fbfb7961d3701488153 https://www.encodeproject.org/files/ENCFF826UVN/@@download/ENCFF826UVN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF143MHT bed narrowPeak replicated peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF080UBG, ENCFF721GKX, ENCFF867YVR 1344042 ENCODE Processing Pipeline cb3d6b000ba4810362dd501b88edd145 https://www.encodeproject.org/files/ENCFF143MHT/@@download/ENCFF143MHT.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF319VZQ bigBed narrowPeak replicated peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF143MHT 3129922 ENCODE Processing Pipeline 0864901b7aa8c974bd6c20d4f0264474 https://www.encodeproject.org/files/ENCFF319VZQ/@@download/ENCFF319VZQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF695MSP bam unfiltered alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF751BHL 2099875172 ENCODE Processing Pipeline 15071d2c371385fb71f3c86a59323afd https://www.encodeproject.org/files/ENCFF695MSP/@@download/ENCFF695MSP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF559AOA bam unfiltered alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF371GMR 1934505879 ENCODE Processing Pipeline 0937fc773edb4931a473642225cc8901 https://www.encodeproject.org/files/ENCFF559AOA/@@download/ENCFF559AOA.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF046JTO bam alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF371GMR 1238041899 ENCODE Processing Pipeline a1e07a2b1d1cf3d4d32b3ca28c510894 https://www.encodeproject.org/files/ENCFF046JTO/@@download/ENCFF046JTO.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF691PZW bam alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF751BHL 1324880863 ENCODE Processing Pipeline 20a20404bd56009f1e291c7812bdb1a2 https://www.encodeproject.org/files/ENCFF691PZW/@@download/ENCFF691PZW.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF629GLZ bed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF046JTO, ENCFF570IJH 1577608 ENCODE Processing Pipeline ba8c5c5933341fda8d59e958ce0f3dba https://www.encodeproject.org/files/ENCFF629GLZ/@@download/ENCFF629GLZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF722JYV bed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF691PZW 1830192 ENCODE Processing Pipeline 8b44a0d42101cf2e1d663fbc16ec5e3c https://www.encodeproject.org/files/ENCFF722JYV/@@download/ENCFF722JYV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF598MKN bed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046JTO, ENCFF387WDC, ENCFF570IJH, ENCFF691PZW 1974619 ENCODE Processing Pipeline c93f16883daa6f67187b67dfbcdac4fa https://www.encodeproject.org/files/ENCFF598MKN/@@download/ENCFF598MKN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF510DOL bigBed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF629GLZ 3624719 ENCODE Processing Pipeline e473cffcc2e74a3f38a4b37fbad69b51 https://www.encodeproject.org/files/ENCFF510DOL/@@download/ENCFF510DOL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF858BKT bigBed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF722JYV 4119508 ENCODE Processing Pipeline 5b75f5bd5030a2e190928e24f0170a63 https://www.encodeproject.org/files/ENCFF858BKT/@@download/ENCFF858BKT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF555MTV bigBed narrowPeak peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF598MKN 4360125 ENCODE Processing Pipeline 1ee5e48fb4a4584299bbba219c4d7006 https://www.encodeproject.org/files/ENCFF555MTV/@@download/ENCFF555MTV.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF479UXT bigWig signal p-value ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF046JTO, ENCFF570IJH 668759815 ENCODE Processing Pipeline 0304bf6d7596e6e51085fa79137f7f0b https://www.encodeproject.org/files/ENCFF479UXT/@@download/ENCFF479UXT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF482HHR bigWig signal p-value ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF691PZW 670669378 ENCODE Processing Pipeline 325d256ffeb86fd7914f89e4f78e1ca7 https://www.encodeproject.org/files/ENCFF482HHR/@@download/ENCFF482HHR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF932ZYM bigWig signal p-value ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046JTO, ENCFF387WDC, ENCFF570IJH, ENCFF691PZW 981225214 ENCODE Processing Pipeline 75ed79d1244825fca84f5a6ff91f7b53 https://www.encodeproject.org/files/ENCFF932ZYM/@@download/ENCFF932ZYM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF282TKT bigWig fold change over control ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF046JTO, ENCFF570IJH 600804965 ENCODE Processing Pipeline 5a1fae6337f52fb0bee43b93ec46271c https://www.encodeproject.org/files/ENCFF282TKT/@@download/ENCFF282TKT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF694TVI bigWig fold change over control ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF691PZW 613536490 ENCODE Processing Pipeline b9cc0cd1a37dc41c3a0728b397e81fbe https://www.encodeproject.org/files/ENCFF694TVI/@@download/ENCFF694TVI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF008XYM bigWig fold change over control ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046JTO, ENCFF387WDC, ENCFF570IJH, ENCFF691PZW 1143217817 ENCODE Processing Pipeline 58db38fa68ab7dda2c475de6d112bf9d https://www.encodeproject.org/files/ENCFF008XYM/@@download/ENCFF008XYM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF889PZP bed narrowPeak replicated peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF598MKN, ENCFF629GLZ, ENCFF722JYV 1363240 ENCODE Processing Pipeline 7b0d92361a0523a30f81f47c48e92fe0 https://www.encodeproject.org/files/ENCFF889PZP/@@download/ENCFF889PZP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF619EQI bigBed narrowPeak replicated peaks ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF889PZP 3169282 ENCODE Processing Pipeline 5a9eb8ea43b73c9c37c7603d9d22f746 https://www.encodeproject.org/files/ENCFF619EQI/@@download/ENCFF619EQI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001NUJ fastq reads ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1190869193 Michael Snyder, Stanford bec2e4357a0e66f9a1145d54d9eef77d https://www.encodeproject.org/files/ENCFF001NUJ/@@download/ENCFF001NUJ.fastq.gz Illumina Genome Analyzer II released low read length, low read depth biological replicates with identical biosample ENCFF001NUO bigWig signal ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NUP 374561173 Michael Snyder, Stanford 58061b58b1a68fbe602837d6d7b80560 https://www.encodeproject.org/files/ENCFF001NUO/@@download/ENCFF001NUO.bigWig mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NUP bam alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NUJ 982295981 Michael Snyder, Stanford bfe20db607504aad5df8f4ced189dc57 https://www.encodeproject.org/files/ENCFF001NUP/@@download/ENCFF001NUP.bam mm9 released low read length, low read depth biological replicates with identical biosample ENCFF001NUM fastq reads ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1131718130 Michael Snyder, Stanford 1b3f727d0a92c758c6333feec1be360a https://www.encodeproject.org/files/ENCFF001NUM/@@download/ENCFF001NUM.fastq.gz Illumina Genome Analyzer II released low read length, low read depth biological replicates with identical biosample ENCFF671RKO bam unfiltered alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NUJ, ENCFF806TVZ 1329055144 J. Michael Cherry, Stanford 77f62ea9376734041fc89fd9861ab59f https://www.encodeproject.org/files/ENCFF671RKO/@@download/ENCFF671RKO.bam mm10-minimal archived low read length, low read depth biological replicates with identical biosample ENCFF591DUL bam unfiltered alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NUM, ENCFF806TVZ 1267364496 J. Michael Cherry, Stanford da2725c16fce3378dfd6a235cd0e9a6f https://www.encodeproject.org/files/ENCFF591DUL/@@download/ENCFF591DUL.bam mm10-minimal archived low read length, low read depth biological replicates with identical biosample ENCFF928CKS bam unfiltered alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NUM, ENCFF018NEO 1269047738 ENCODE Processing Pipeline 72d3c1040807e00e3e7190f1f012377a https://www.encodeproject.org/files/ENCFF928CKS/@@download/ENCFF928CKS.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF190WZK bam unfiltered alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NUJ, ENCFF018NEO 1330641354 ENCODE Processing Pipeline 7f44c82d4f72d919fc1dab907ce327d9 https://www.encodeproject.org/files/ENCFF190WZK/@@download/ENCFF190WZK.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF157OGB bam alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NUM, ENCFF018NEO 833575879 ENCODE Processing Pipeline eba004eb944dc1f0714335579e1f3899 https://www.encodeproject.org/files/ENCFF157OGB/@@download/ENCFF157OGB.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF273KKQ bam alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NUJ, ENCFF018NEO 857907565 ENCODE Processing Pipeline 6e8c34dd7e9b37cda69d92271f31e407 https://www.encodeproject.org/files/ENCFF273KKQ/@@download/ENCFF273KKQ.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF001IDA bam alignments ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IDP 1518845615 Barbara Wold, Caltech d9537459e61047eac9043479fa2b16ed https://www.encodeproject.org/files/ENCFF001IDA/@@download/ENCFF001IDA.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IDB bigBed narrowPeak peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUT 308007 Barbara Wold, Caltech 52285bf13a7471d36ee34faf34a4a69f https://www.encodeproject.org/files/ENCFF001IDB/@@download/ENCFF001IDB.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IDE bigWig signal ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDA 105717961 Barbara Wold, Caltech 88b560e62ea8a88dc81b5886f5b948de https://www.encodeproject.org/files/ENCFF001IDE/@@download/ENCFF001IDE.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IDP fastq reads ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1583392127 Barbara Wold, Caltech 3829991ad29d3f3696d3407fdf9c8833 https://www.encodeproject.org/files/ENCFF001IDP/@@download/ENCFF001IDP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001XUT bed narrowPeak peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDA 187553 Barbara Wold, Caltech bf4f6508029936584d5c68c1547fcf87 https://www.encodeproject.org/files/ENCFF001XUT/@@download/ENCFF001XUT.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF141BNG bam unfiltered alignments ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDP, ENCFF018NEO 1580188743 ENCODE Processing Pipeline 5fa508045d5058f5138da1a6cd1929a5 https://www.encodeproject.org/files/ENCFF141BNG/@@download/ENCFF141BNG.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF361FQN bam alignments ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDP, ENCFF018NEO 659226877 ENCODE Processing Pipeline 580ba19fb60abd1e7e616066828848b8 https://www.encodeproject.org/files/ENCFF361FQN/@@download/ENCFF361FQN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF031NXN bigWig signal p-value ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF361FQN, ENCFF875IDP 228550460 ENCODE Processing Pipeline 77d3bc5d3b5a869e3dc2f739ebfed53d https://www.encodeproject.org/files/ENCFF031NXN/@@download/ENCFF031NXN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF674URL bigWig fold change over control ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF361FQN, ENCFF875IDP 195520517 ENCODE Processing Pipeline 1844b2f172661d3d781c05d9e76b15ba https://www.encodeproject.org/files/ENCFF674URL/@@download/ENCFF674URL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF706ZYA bed narrowPeak peaks and background as input for IDR ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF361FQN, ENCFF875IDP 3838234 ENCODE Processing Pipeline 7a4b95a30679586276ecf63c9d78449c https://www.encodeproject.org/files/ENCFF706ZYA/@@download/ENCFF706ZYA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF867PBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF706ZYA 223243 ENCODE Processing Pipeline ea4f8b267e0baeb43b6271365c442b8c https://www.encodeproject.org/files/ENCFF867PBE/@@download/ENCFF867PBE.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF537SND bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF867PBE 390950 ENCODE Processing Pipeline 03d0387e9135e443d0208affa6c4dbd3 https://www.encodeproject.org/files/ENCFF537SND/@@download/ENCFF537SND.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF191DOH bigBed narrowPeak peaks and background as input for IDR ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF706ZYA 7770744 ENCODE Processing Pipeline 6137d7ff75a5b35a31a6764a28f0ceed https://www.encodeproject.org/files/ENCFF191DOH/@@download/ENCFF191DOH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IFM bigBed narrowPeak peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUZ 393835 Barbara Wold, Caltech 5ded330e25d5307ac2f42c16361885d1 https://www.encodeproject.org/files/ENCFF001IFM/@@download/ENCFF001IFM.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF001IFN fastq reads ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 1088968509 Barbara Wold, Caltech e7b97cb8edca3e8f4d9ee5d5205f6ca7 https://www.encodeproject.org/files/ENCFF001IFN/@@download/ENCFF001IFN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF001IFO fastq reads ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 331435284 Barbara Wold, Caltech 0f9a9c343aed123dd0108f919859cf48 https://www.encodeproject.org/files/ENCFF001IFO/@@download/ENCFF001IFO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF001IFP bigWig signal ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFQ 57347869 Barbara Wold, Caltech 8dbe7ff0ecac51e8fbc12a6fc19eb5b7 https://www.encodeproject.org/files/ENCFF001IFP/@@download/ENCFF001IFP.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF001IFQ bam alignments ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IFN, ENCFF001IFO 1419850253 Barbara Wold, Caltech fd775fc897f2321ac6715fa0196649a6 https://www.encodeproject.org/files/ENCFF001IFQ/@@download/ENCFF001IFQ.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF001XUZ bed narrowPeak peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFQ 243523 Barbara Wold, Caltech be16de20593ae24edac696222a67d168 https://www.encodeproject.org/files/ENCFF001XUZ/@@download/ENCFF001XUZ.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF441FAX bam unfiltered alignments ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFN, ENCFF001IFO, ENCFF018NEO 1461711206 ENCODE Processing Pipeline 117ac352b8ae200b6ea3b3401ccf34d6 https://www.encodeproject.org/files/ENCFF441FAX/@@download/ENCFF441FAX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF570IDO bam alignments ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFN, ENCFF001IFO, ENCFF018NEO 276029212 ENCODE Processing Pipeline 7d4e5d305e41579256dd4c992e1364a6 https://www.encodeproject.org/files/ENCFF570IDO/@@download/ENCFF570IDO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF542EGC bigWig signal p-value ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF570IDO 284294296 ENCODE Processing Pipeline 23dfc7edcf61c9ed8fea4e4417c318ae https://www.encodeproject.org/files/ENCFF542EGC/@@download/ENCFF542EGC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF967HVW bigWig fold change over control ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF570IDO 124290303 ENCODE Processing Pipeline 57bff278394c6ba920d63cbb2beed02c https://www.encodeproject.org/files/ENCFF967HVW/@@download/ENCFF967HVW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF616GST bed narrowPeak peaks and background as input for IDR ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF570IDO 2631701 ENCODE Processing Pipeline def15513cd32b971744d54d7ef63901e https://www.encodeproject.org/files/ENCFF616GST/@@download/ENCFF616GST.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF408CHO bigBed narrowPeak peaks and background as input for IDR ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF616GST 5711040 ENCODE Processing Pipeline a2b280dfa6bcda89c3249afc7de65384 https://www.encodeproject.org/files/ENCFF408CHO/@@download/ENCFF408CHO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF196HUO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF616GST 63937 ENCODE Processing Pipeline 2640fc0d663cd1f205a72e8c7ee55dba https://www.encodeproject.org/files/ENCFF196HUO/@@download/ENCFF196HUO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF404WPO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF196HUO 148554 ENCODE Processing Pipeline ed706652dcdaaaec48057609db5b8a72 https://www.encodeproject.org/files/ENCFF404WPO/@@download/ENCFF404WPO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF001IER bam alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 1 ENCFF001IEY 1275506611 Barbara Wold, Caltech 0d20c88104b76f7d3975ac8b95f1be15 https://www.encodeproject.org/files/ENCFF001IER/@@download/ENCFF001IER.bam mm9 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001IET bigWig signal ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IER 127542519 Barbara Wold, Caltech c40fc3b4f5d782adb1c17d7d1bbc432a https://www.encodeproject.org/files/ENCFF001IET/@@download/ENCFF001IET.bigWig mm9 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001IEY fastq reads ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1211522755 Barbara Wold, Caltech 2e2a8ec2eb3b6564d7d24185af306b0f https://www.encodeproject.org/files/ENCFF001IEY/@@download/ENCFF001IEY.fastq.gz Illumina Genome Analyzer II released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001IES bam alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 2 ENCFF001IEZ 1986183675 Barbara Wold, Caltech c809bebfe7b5ccd98863de56cae1956a https://www.encodeproject.org/files/ENCFF001IES/@@download/ENCFF001IES.bam mm9 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001IEW bigWig signal ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 2 1 ENCFF001IES 235580585 Barbara Wold, Caltech 0bc0eb7c2c506b82b42d553faf8505eb https://www.encodeproject.org/files/ENCFF001IEW/@@download/ENCFF001IEW.bigWig mm9 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001IEZ fastq reads ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 2 1 50 single-ended 1915699037 Barbara Wold, Caltech e1809c850776fb587748530b0d384e3d https://www.encodeproject.org/files/ENCFF001IEZ/@@download/ENCFF001IEZ.fastq.gz Illumina Genome Analyzer II released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF505UMQ bam unfiltered alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 1 ENCFF001IEY, ENCFF806TVZ 1350848793 ENCODE Processing Pipeline 4767b9d3e3f7f6b471f74a78c2444626 https://www.encodeproject.org/files/ENCFF505UMQ/@@download/ENCFF505UMQ.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF993HAY bam alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IEY, ENCFF018NEO 974820067 ENCODE Processing Pipeline 7a00a1dbe24adbc4af114a8c5fd4a4ad https://www.encodeproject.org/files/ENCFF993HAY/@@download/ENCFF993HAY.bam mm10 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF290FPB bam alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IEZ, ENCFF018NEO 1475911787 ENCODE Processing Pipeline 9f54171228a1ed6ea8434ee7bb7b7b60 https://www.encodeproject.org/files/ENCFF290FPB/@@download/ENCFF290FPB.bam mm10 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF486VTW bam unfiltered alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IEY, ENCFF018NEO 1352287916 ENCODE Processing Pipeline b241930eda2b159db9dbf812850fc5f3 https://www.encodeproject.org/files/ENCFF486VTW/@@download/ENCFF486VTW.bam mm10 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF667EIZ bam unfiltered alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IEZ, ENCFF018NEO 2102749319 ENCODE Processing Pipeline b959f42f35f54016909d1d8698beaa0f https://www.encodeproject.org/files/ENCFF667EIZ/@@download/ENCFF667EIZ.bam mm10 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF002AKS fastq reads ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1321074183 Bing Ren, UCSD 0a1813adc58fc0f0e7f47d4035602c8b SRA:SRR3652221 https://www.encodeproject.org/files/ENCFF002AKS/@@download/ENCFF002AKS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQA/ released low read length ENCFF002AKT fastq reads ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1324639654 Bing Ren, UCSD 951e242bb0dfc4bc7642089978ce8d7a SRA:SRR3652222 https://www.encodeproject.org/files/ENCFF002AKT/@@download/ENCFF002AKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APX/ released low read length, inconsistent control read length ENCFF652KRQ bam alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKT, ENCFF806TVZ 1002085884 ENCODE Processing Pipeline 92b1028ad27946296ffd597ddd40e671 https://www.encodeproject.org/files/ENCFF652KRQ/@@download/ENCFF652KRQ.bam mm10-minimal archived low read length ENCFF955BIC bam alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKS, ENCFF806TVZ 1006023651 ENCODE Processing Pipeline 0ee49ac436889ba973516994596914cd https://www.encodeproject.org/files/ENCFF955BIC/@@download/ENCFF955BIC.bam mm10-minimal archived low read length ENCFF545PXT bigBed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF669INA 2627492 ENCODE Processing Pipeline 681fa0e07a16e8e57f433ae5936b4da6 https://www.encodeproject.org/files/ENCFF545PXT/@@download/ENCFF545PXT.bigBed mm10-minimal archived low read length ENCFF669INA bed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF652KRQ, ENCFF775YLK 829394 ENCODE Processing Pipeline b181a106ff1a7ef6751a3c1b91e8f58a https://www.encodeproject.org/files/ENCFF669INA/@@download/ENCFF669INA.bed.gz mm10-minimal archived low read length ENCFF042EFW bigBed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF382AXN 2526553 ENCODE Processing Pipeline ee438bc96f1dc7866a72534f5e1585f6 https://www.encodeproject.org/files/ENCFF042EFW/@@download/ENCFF042EFW.bigBed mm10-minimal archived low read length ENCFF382AXN bed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF775YLK, ENCFF955BIC 794674 ENCODE Processing Pipeline d3b4b3476bb8833e084c656ea05e32ad https://www.encodeproject.org/files/ENCFF382AXN/@@download/ENCFF382AXN.bed.gz mm10-minimal archived low read length ENCFF935MZS bed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF652KRQ, ENCFF775YLK, ENCFF955BIC 845656 ENCODE Processing Pipeline caf733d3124751f6358a80ad609a03c0 https://www.encodeproject.org/files/ENCFF935MZS/@@download/ENCFF935MZS.bed.gz mm10-minimal archived low read length ENCFF285BOB bigBed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF935MZS 2675647 ENCODE Processing Pipeline d5518d2de2c28d7c00f69a6828e906f7 https://www.encodeproject.org/files/ENCFF285BOB/@@download/ENCFF285BOB.bigBed mm10-minimal archived low read length ENCFF978INC bigWig signal p-value ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF652KRQ, ENCFF775YLK 507947743 ENCODE Processing Pipeline e19c232a9513b69c66b1c8056854652c https://www.encodeproject.org/files/ENCFF978INC/@@download/ENCFF978INC.bigWig mm10-minimal archived low read length ENCFF379XYC bigWig signal p-value ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF775YLK, ENCFF955BIC 509298504 ENCODE Processing Pipeline 4a26a58b2dc34261f022d66cfaf72849 https://www.encodeproject.org/files/ENCFF379XYC/@@download/ENCFF379XYC.bigWig mm10-minimal archived low read length ENCFF437NYJ bigWig signal p-value ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF652KRQ, ENCFF775YLK, ENCFF955BIC 718952482 ENCODE Processing Pipeline 680794e96037a2f86ef8389f883faf3d https://www.encodeproject.org/files/ENCFF437NYJ/@@download/ENCFF437NYJ.bigWig mm10-minimal archived low read length ENCFF601GMT bigWig fold change over control ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF652KRQ, ENCFF775YLK 486395958 ENCODE Processing Pipeline 80dffd82df94f57036ee4bc620ee3b1d https://www.encodeproject.org/files/ENCFF601GMT/@@download/ENCFF601GMT.bigWig mm10-minimal archived low read length ENCFF903HGN bigWig fold change over control ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF775YLK, ENCFF955BIC 506547929 ENCODE Processing Pipeline b6ea278fb46d4211f75c07a269901e2d https://www.encodeproject.org/files/ENCFF903HGN/@@download/ENCFF903HGN.bigWig mm10-minimal archived low read length ENCFF644HPA bigWig fold change over control ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF652KRQ, ENCFF775YLK, ENCFF955BIC 767711200 ENCODE Processing Pipeline 19ef4c9fc79e37e5d46d13022fcef717 https://www.encodeproject.org/files/ENCFF644HPA/@@download/ENCFF644HPA.bigWig mm10-minimal archived low read length ENCFF010IJF bigBed narrowPeak replicated peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF292DNP 2203521 ENCODE Processing Pipeline 834b9719d14c2689d1905cd209e1e0c5 https://www.encodeproject.org/files/ENCFF010IJF/@@download/ENCFF010IJF.bigBed mm10-minimal archived low read length ENCFF292DNP bed narrowPeak replicated peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF382AXN, ENCFF669INA, ENCFF935MZS 942344 ENCODE Processing Pipeline a4b51d7dfe426b898cb175b6883fbbe0 https://www.encodeproject.org/files/ENCFF292DNP/@@download/ENCFF292DNP.bed.gz mm10-minimal archived low read length ENCFF779HNH bam unfiltered alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKS, ENCFF018NEO 1400278715 ENCODE Processing Pipeline add42fd3bd1daa10551a4d809f7f9449 https://www.encodeproject.org/files/ENCFF779HNH/@@download/ENCFF779HNH.bam mm10 released low read length ENCFF471WGU bam unfiltered alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKT, ENCFF018NEO 1387867610 ENCODE Processing Pipeline e5d86ab7ae0bbda7847eb307899d2377 https://www.encodeproject.org/files/ENCFF471WGU/@@download/ENCFF471WGU.bam mm10 released low read length ENCFF476QXJ bam alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKT, ENCFF018NEO 1001902695 ENCODE Processing Pipeline ae547a5bc4bd2b328f7bb580d260f495 https://www.encodeproject.org/files/ENCFF476QXJ/@@download/ENCFF476QXJ.bam mm10 released low read length ENCFF427VDY bam alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKS, ENCFF018NEO 1005796159 ENCODE Processing Pipeline f1637c332be5fff9c3bacfb68f50451c https://www.encodeproject.org/files/ENCFF427VDY/@@download/ENCFF427VDY.bam mm10 released low read length ENCFF033HUW bed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF476QXJ, ENCFF831XWF, ENCFF911DNW 838876 ENCODE Processing Pipeline 9414d3401a3f8d9681cff943845b018a https://www.encodeproject.org/files/ENCFF033HUW/@@download/ENCFF033HUW.bed.gz mm10 released low read length ENCFF212AJD bed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF427VDY, ENCFF911DNW 750970 ENCODE Processing Pipeline 1d2ec76d8ca73ebdcf0d9516bdb66158 https://www.encodeproject.org/files/ENCFF212AJD/@@download/ENCFF212AJD.bed.gz mm10 released low read length ENCFF814QGR bed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF427VDY, ENCFF476QXJ, ENCFF831XWF, ENCFF911DNW 797901 ENCODE Processing Pipeline 97a0ee7d82d0fd2c57108af1af409f23 https://www.encodeproject.org/files/ENCFF814QGR/@@download/ENCFF814QGR.bed.gz mm10 released low read length ENCFF414SQO bigBed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033HUW 2662422 ENCODE Processing Pipeline cc0d7accfed7d59167184edb237095fe https://www.encodeproject.org/files/ENCFF414SQO/@@download/ENCFF414SQO.bigBed mm10 released low read length ENCFF050CCN bigBed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF212AJD 2404798 ENCODE Processing Pipeline 3ae9d70929ea49091040f5736a48dedf https://www.encodeproject.org/files/ENCFF050CCN/@@download/ENCFF050CCN.bigBed mm10 released low read length ENCFF477HWL bigBed narrowPeak peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF814QGR 2535283 ENCODE Processing Pipeline 418af5369309327ac7c39e1ec6d79a99 https://www.encodeproject.org/files/ENCFF477HWL/@@download/ENCFF477HWL.bigBed mm10 released low read length ENCFF678QXI bigWig signal p-value ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF476QXJ, ENCFF831XWF, ENCFF911DNW 486090429 ENCODE Processing Pipeline 3e37926db22fb8b206e55f6003950ce0 https://www.encodeproject.org/files/ENCFF678QXI/@@download/ENCFF678QXI.bigWig mm10 released low read length ENCFF880NTH bigWig signal p-value ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF427VDY, ENCFF911DNW 398003175 ENCODE Processing Pipeline 924729215fdf855b171e31b72ea48413 https://www.encodeproject.org/files/ENCFF880NTH/@@download/ENCFF880NTH.bigWig mm10 released low read length ENCFF699WLG bigWig signal p-value ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF427VDY, ENCFF476QXJ, ENCFF831XWF, ENCFF911DNW 692150098 ENCODE Processing Pipeline b05e4e46cc57ecb01de56c50dbb1d525 https://www.encodeproject.org/files/ENCFF699WLG/@@download/ENCFF699WLG.bigWig mm10 released low read length ENCFF644DII bigWig fold change over control ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF476QXJ, ENCFF831XWF, ENCFF911DNW 506231683 ENCODE Processing Pipeline ab55cfbd7c5b4a956bcadc052f358db6 https://www.encodeproject.org/files/ENCFF644DII/@@download/ENCFF644DII.bigWig mm10 released low read length ENCFF298CSO bigWig fold change over control ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF427VDY, ENCFF911DNW 401097015 ENCODE Processing Pipeline 31fc494412899df85b1cc66bc51b3069 https://www.encodeproject.org/files/ENCFF298CSO/@@download/ENCFF298CSO.bigWig mm10 released low read length ENCFF766FZH bigWig fold change over control ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF427VDY, ENCFF476QXJ, ENCFF831XWF, ENCFF911DNW 751330879 ENCODE Processing Pipeline 1cb930fa4554c0e865da871365b1344b https://www.encodeproject.org/files/ENCFF766FZH/@@download/ENCFF766FZH.bigWig mm10 released low read length ENCFF145YIU bed narrowPeak replicated peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033HUW, ENCFF212AJD, ENCFF814QGR 936405 ENCODE Processing Pipeline d02296e951036230e4e25b6642c16b65 https://www.encodeproject.org/files/ENCFF145YIU/@@download/ENCFF145YIU.bed.gz mm10 released low read length ENCFF088NAS bigBed narrowPeak replicated peaks ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF145YIU 2192339 ENCODE Processing Pipeline 058041fddd162195bcfb49d0de8a3e4c https://www.encodeproject.org/files/ENCFF088NAS/@@download/ENCFF088NAS.bigBed mm10 released low read length ENCFF014LDJ fastq reads ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 3492555388 Bing Ren, UCSD 4e932899c6e3030698f21805b41df02e SRA:SRR3652110 https://www.encodeproject.org/files/ENCFF014LDJ/@@download/ENCFF014LDJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF291VOE/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF984JKW fastq reads ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2420528150 Bing Ren, UCSD 8c6750368a94771e9b7b16a082b8272f SRA:SRR3652111 https://www.encodeproject.org/files/ENCFF984JKW/@@download/ENCFF984JKW.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF927FTJ fastq reads ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3103186845 Bing Ren, UCSD 002bfb8a64dd56d43a9a1e13107847a9 SRA:SRR3652108 https://www.encodeproject.org/files/ENCFF927FTJ/@@download/ENCFF927FTJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF666NSZ fastq reads ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 625596699 Bing Ren, UCSD 5c74d8de5bd5fa105bef71279d709a16 SRA:SRR3652112 https://www.encodeproject.org/files/ENCFF666NSZ/@@download/ENCFF666NSZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF291VOE/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF665WTI fastq reads ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1372397810 Bing Ren, UCSD accc14365b1f80fb1fb0cb470e5a8a0f SRA:SRR3652109 https://www.encodeproject.org/files/ENCFF665WTI/@@download/ENCFF665WTI.fastq.gz Illumina HiSeq 2500 /files/ENCFF661YTO/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF163TNZ bam alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF665WTI, ENCFF806TVZ, ENCFF927FTJ 3163930831 ENCODE Processing Pipeline b6ec49d75c652d38b5de2331eb4a4b04 https://www.encodeproject.org/files/ENCFF163TNZ/@@download/ENCFF163TNZ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF211KIX bam alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF014LDJ, ENCFF666NSZ, ENCFF806TVZ, ENCFF984JKW 3894853631 ENCODE Processing Pipeline 5178ebac9211c2d5f85011ffe8cfe78b https://www.encodeproject.org/files/ENCFF211KIX/@@download/ENCFF211KIX.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF885VTY bed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF163TNZ, ENCFF211KIX, ENCFF792GEI 2558324 ENCODE Processing Pipeline 40fae96ba22900a28a81ca5ea3fcf9da https://www.encodeproject.org/files/ENCFF885VTY/@@download/ENCFF885VTY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF362JQW bed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF211KIX, ENCFF792GEI 2674331 ENCODE Processing Pipeline 5777640e469f0ed4c5be00544dd2d82c https://www.encodeproject.org/files/ENCFF362JQW/@@download/ENCFF362JQW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF908QGD bed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF163TNZ, ENCFF792GEI 2378722 ENCODE Processing Pipeline df971f299ff3044a815c95a0b3a1975a https://www.encodeproject.org/files/ENCFF908QGD/@@download/ENCFF908QGD.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF732HVC bigBed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF908QGD 5510688 ENCODE Processing Pipeline bd7a50c3130c688b399dfc54957a51c0 https://www.encodeproject.org/files/ENCFF732HVC/@@download/ENCFF732HVC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF526RTA bigBed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF885VTY 5682615 ENCODE Processing Pipeline 55ca3febbb5932722b94f247d9b5a6b6 https://www.encodeproject.org/files/ENCFF526RTA/@@download/ENCFF526RTA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF071OPN bigBed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF362JQW 5988256 ENCODE Processing Pipeline 06ad5af5b3bce8c5465331a8dace10b1 https://www.encodeproject.org/files/ENCFF071OPN/@@download/ENCFF071OPN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF190IYT bigWig signal p-value ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF163TNZ, ENCFF792GEI 1225155011 ENCODE Processing Pipeline 1e404c6883886ca13adc9685ba809cbc https://www.encodeproject.org/files/ENCFF190IYT/@@download/ENCFF190IYT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF560NVP bigWig signal p-value ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF211KIX, ENCFF792GEI 1238382361 ENCODE Processing Pipeline 0e706ce4529c8327f44448e7ca287857 https://www.encodeproject.org/files/ENCFF560NVP/@@download/ENCFF560NVP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF057KTI bigWig signal p-value ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF163TNZ, ENCFF211KIX, ENCFF792GEI 1582092124 ENCODE Processing Pipeline 39709ebde18815b7018a5defb63c6637 https://www.encodeproject.org/files/ENCFF057KTI/@@download/ENCFF057KTI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF797YLQ bigWig fold change over control ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF211KIX, ENCFF792GEI 1391905213 ENCODE Processing Pipeline 575454fee4e9848def31c654654af310 https://www.encodeproject.org/files/ENCFF797YLQ/@@download/ENCFF797YLQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF841VAP bigWig fold change over control ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF163TNZ, ENCFF792GEI 1267348955 ENCODE Processing Pipeline 0a597b458edcc37b8995407624fcaa5f https://www.encodeproject.org/files/ENCFF841VAP/@@download/ENCFF841VAP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF224UWP bigWig fold change over control ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF163TNZ, ENCFF211KIX, ENCFF792GEI 1877763038 ENCODE Processing Pipeline 6d846d66784efa573c60bb2f9f0c3d50 https://www.encodeproject.org/files/ENCFF224UWP/@@download/ENCFF224UWP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF628HVB bed narrowPeak replicated peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF362JQW, ENCFF885VTY, ENCFF908QGD 2341465 ENCODE Processing Pipeline a23dbb0ee9e32a7d5617fc6094a1cc33 https://www.encodeproject.org/files/ENCFF628HVB/@@download/ENCFF628HVB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF088TJT bigBed narrowPeak replicated peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF628HVB 4113842 ENCODE Processing Pipeline b911548747049e4c46e5afb3638ea201 https://www.encodeproject.org/files/ENCFF088TJT/@@download/ENCFF088TJT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF614CTZ bam unfiltered alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF665WTI, ENCFF927FTJ 5310828863 ENCODE Processing Pipeline 1bc989275c73772f67421af43ad17ff7 https://www.encodeproject.org/files/ENCFF614CTZ/@@download/ENCFF614CTZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF290NRO bam alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF665WTI, ENCFF927FTJ 3163279764 ENCODE Processing Pipeline e83045776cde9c0182f942d9afaea050 https://www.encodeproject.org/files/ENCFF290NRO/@@download/ENCFF290NRO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF148CLE bam unfiltered alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF014LDJ, ENCFF018NEO, ENCFF666NSZ, ENCFF984JKW 7573489728 ENCODE Processing Pipeline f8e184772e584c6b81d7d2918ca3930b https://www.encodeproject.org/files/ENCFF148CLE/@@download/ENCFF148CLE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF746WWE bam alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF014LDJ, ENCFF018NEO, ENCFF666NSZ, ENCFF984JKW 3894259204 ENCODE Processing Pipeline 9f46ed0f625f6cb6d7751ef733873bec https://www.encodeproject.org/files/ENCFF746WWE/@@download/ENCFF746WWE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF606ZQD bed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF746WWE, ENCFF880SQD, ENCFF901RYX 2667538 ENCODE Processing Pipeline 3aabed0e969145d8d3766206501f936b https://www.encodeproject.org/files/ENCFF606ZQD/@@download/ENCFF606ZQD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF582STC bed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF290NRO, ENCFF880SQD 2228090 ENCODE Processing Pipeline 3d3b2d7d5e3145df3aa9e604fa0d8f5c https://www.encodeproject.org/files/ENCFF582STC/@@download/ENCFF582STC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF275HVH bigBed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF606ZQD 5976590 ENCODE Processing Pipeline a965134b92623fd06d77d63fe6296e0e https://www.encodeproject.org/files/ENCFF275HVH/@@download/ENCFF275HVH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF202BJS bed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF290NRO, ENCFF746WWE, ENCFF880SQD, ENCFF901RYX 2509041 ENCODE Processing Pipeline 228e7ffa88b0ad88188b93338d3d9b5b https://www.encodeproject.org/files/ENCFF202BJS/@@download/ENCFF202BJS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF795GOZ bigBed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF582STC 5107025 ENCODE Processing Pipeline 545c2700f021794920c2affbcc895aa3 https://www.encodeproject.org/files/ENCFF795GOZ/@@download/ENCFF795GOZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF154HTX bigBed narrowPeak peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF202BJS 5557539 ENCODE Processing Pipeline 7f5774a50ff70e5cbecf5b68a8dff38a https://www.encodeproject.org/files/ENCFF154HTX/@@download/ENCFF154HTX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF576KFA bigWig signal p-value ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF746WWE, ENCFF880SQD, ENCFF901RYX 1060908324 ENCODE Processing Pipeline 1ba7f4247ba1d4e985fafcb6bee948db https://www.encodeproject.org/files/ENCFF576KFA/@@download/ENCFF576KFA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF846AHT bigWig signal p-value ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF290NRO, ENCFF880SQD 1025045017 ENCODE Processing Pipeline 8108968922e064534986289ba082f513 https://www.encodeproject.org/files/ENCFF846AHT/@@download/ENCFF846AHT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF106YGO bigWig signal p-value ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF290NRO, ENCFF746WWE, ENCFF880SQD, ENCFF901RYX 1680011350 ENCODE Processing Pipeline c13a1877cc4d7b6518a15529ba575304 https://www.encodeproject.org/files/ENCFF106YGO/@@download/ENCFF106YGO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF706SCV bigWig fold change over control ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF746WWE, ENCFF880SQD, ENCFF901RYX 1437915415 ENCODE Processing Pipeline 44068c5fa3990883d19b9210ac522fd6 https://www.encodeproject.org/files/ENCFF706SCV/@@download/ENCFF706SCV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF481IDY bigWig fold change over control ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF290NRO, ENCFF880SQD 1032731604 ENCODE Processing Pipeline 87e5902794496112802af240a066f40a https://www.encodeproject.org/files/ENCFF481IDY/@@download/ENCFF481IDY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF393XPO bigWig fold change over control ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF290NRO, ENCFF746WWE, ENCFF880SQD, ENCFF901RYX 1887325353 ENCODE Processing Pipeline fd78495b7e3116dd560b650b364e0d47 https://www.encodeproject.org/files/ENCFF393XPO/@@download/ENCFF393XPO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF704ZRS bed narrowPeak replicated peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF202BJS, ENCFF582STC, ENCFF606ZQD 2228553 ENCODE Processing Pipeline 7d4b21ace5f1f6f3377337b9266bfd67 https://www.encodeproject.org/files/ENCFF704ZRS/@@download/ENCFF704ZRS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF635DAB bigBed narrowPeak replicated peaks ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF704ZRS 3895850 ENCODE Processing Pipeline 44030ef5f9fc34ab419a2b8cfdcce2e9 https://www.encodeproject.org/files/ENCFF635DAB/@@download/ENCFF635DAB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001ZSK fastq reads ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1107179403 Bing Ren, UCSD 0d927abfc5a961434d88f5ccf79c2d81 SRA:SRR3651357 https://www.encodeproject.org/files/ENCFF001ZSK/@@download/ENCFF001ZSK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUJ/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001ZSO fastq reads ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1006603303 Bing Ren, UCSD a6b2d36b6e8e7e2b1cc3f2001092ee00 SRA:SRR3651356 https://www.encodeproject.org/files/ENCFF001ZSO/@@download/ENCFF001ZSO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUI/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF783AUL bam alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSK, ENCFF806TVZ 1017932417 ENCODE Processing Pipeline 13e96ab0e496c4a9b89c95141238a39e https://www.encodeproject.org/files/ENCFF783AUL/@@download/ENCFF783AUL.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF011QSN bam alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSO, ENCFF806TVZ 864904488 ENCODE Processing Pipeline baa67d1ef04f2757a42f59b64172d359 https://www.encodeproject.org/files/ENCFF011QSN/@@download/ENCFF011QSN.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF255IZO bed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF783AUL, ENCFF851KTA 866931 ENCODE Processing Pipeline 60ee84c73155fcfc6ddb4787a79ef554 https://www.encodeproject.org/files/ENCFF255IZO/@@download/ENCFF255IZO.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF218IAH bed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF011QSN, ENCFF265KAG, ENCFF851KTA 1059932 ENCODE Processing Pipeline 7b5606209aa930fa75d6d5f02a6e4091 https://www.encodeproject.org/files/ENCFF218IAH/@@download/ENCFF218IAH.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF455POZ bed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF011QSN, ENCFF265KAG, ENCFF783AUL, ENCFF851KTA 625790 ENCODE Processing Pipeline eb66a4e50e4ca03ade0847ecea89da5a https://www.encodeproject.org/files/ENCFF455POZ/@@download/ENCFF455POZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF346EYZ bigBed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255IZO 2190695 ENCODE Processing Pipeline 0f9aa33703a72dd7f4c792bf733ab3ca https://www.encodeproject.org/files/ENCFF346EYZ/@@download/ENCFF346EYZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF734DFB bigBed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF455POZ 2014821 ENCODE Processing Pipeline bd00ddfae7c545cff2edd9c7a940697a https://www.encodeproject.org/files/ENCFF734DFB/@@download/ENCFF734DFB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF675UGF bigBed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF218IAH 2619308 ENCODE Processing Pipeline db1de71967a900fd488aaa4ddc19b0e2 https://www.encodeproject.org/files/ENCFF675UGF/@@download/ENCFF675UGF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF793XXN bigWig signal p-value ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF783AUL, ENCFF851KTA 412640720 ENCODE Processing Pipeline b97cc11ab88604db375e258b0a871291 https://www.encodeproject.org/files/ENCFF793XXN/@@download/ENCFF793XXN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF200ZLU bigWig signal p-value ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF011QSN, ENCFF265KAG, ENCFF851KTA 362142784 ENCODE Processing Pipeline 828e909b719b207290bd17fdccd3915a https://www.encodeproject.org/files/ENCFF200ZLU/@@download/ENCFF200ZLU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF230DJG bigWig signal p-value ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF011QSN, ENCFF265KAG, ENCFF783AUL, ENCFF851KTA 394039988 ENCODE Processing Pipeline d04807cf20a32db352a4e7203aee9e86 https://www.encodeproject.org/files/ENCFF230DJG/@@download/ENCFF230DJG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF654DNF bigWig fold change over control ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF783AUL, ENCFF851KTA 410755094 ENCODE Processing Pipeline fbd1db4eec34e33568cfe84e5e5f7144 https://www.encodeproject.org/files/ENCFF654DNF/@@download/ENCFF654DNF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF458WFA bed narrowPeak replicated peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF218IAH, ENCFF255IZO, ENCFF455POZ 708004 ENCODE Processing Pipeline 2814e20fbe0221016f8b17f248d023c8 https://www.encodeproject.org/files/ENCFF458WFA/@@download/ENCFF458WFA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF675WIL bigWig fold change over control ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF011QSN, ENCFF265KAG, ENCFF851KTA 360996016 ENCODE Processing Pipeline 67a9f7a842333c0d587e1131482b0878 https://www.encodeproject.org/files/ENCFF675WIL/@@download/ENCFF675WIL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF110HUK bigWig fold change over control ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF011QSN, ENCFF265KAG, ENCFF783AUL, ENCFF851KTA 627150585 ENCODE Processing Pipeline 8a019c9e72753181ecb45eee9747214b https://www.encodeproject.org/files/ENCFF110HUK/@@download/ENCFF110HUK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF095WPP bigBed narrowPeak replicated peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF458WFA 1818423 ENCODE Processing Pipeline 9e57276bc4d093ee685e2e9da631a62d https://www.encodeproject.org/files/ENCFF095WPP/@@download/ENCFF095WPP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF649LMA bam unfiltered alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSO, ENCFF018NEO 1291881028 ENCODE Processing Pipeline 4d9ed5cee2b1345ae251aa64db0c5a40 https://www.encodeproject.org/files/ENCFF649LMA/@@download/ENCFF649LMA.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF515IRO bam unfiltered alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSK, ENCFF018NEO 1436929217 ENCODE Processing Pipeline c15846427f5675f707ac09f40019b1a6 https://www.encodeproject.org/files/ENCFF515IRO/@@download/ENCFF515IRO.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF553VHF bam alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSO, ENCFF018NEO 864711799 ENCODE Processing Pipeline 662d453c17eab8d8db24ca727b7aca54 https://www.encodeproject.org/files/ENCFF553VHF/@@download/ENCFF553VHF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF884GIM bam alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSK, ENCFF018NEO 1017722849 ENCODE Processing Pipeline cc19aa89da71bfda9b33c2a5462125bb https://www.encodeproject.org/files/ENCFF884GIM/@@download/ENCFF884GIM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF069BKY bed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF884GIM 868075 ENCODE Processing Pipeline cc73986dde2ac30bb9138bd3a616fb81 https://www.encodeproject.org/files/ENCFF069BKY/@@download/ENCFF069BKY.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF738UCU bed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF553VHF 511709 ENCODE Processing Pipeline ae3fce6bd0e0fec67bc989ac04a39a32 https://www.encodeproject.org/files/ENCFF738UCU/@@download/ENCFF738UCU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF536UKT bed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF553VHF, ENCFF884GIM 626310 ENCODE Processing Pipeline 886736064f427fdddbc8ef0fc7e22ad2 https://www.encodeproject.org/files/ENCFF536UKT/@@download/ENCFF536UKT.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF241ANT bigBed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF069BKY 2194184 ENCODE Processing Pipeline 286013b4dd80e74d44479732f939bb4d https://www.encodeproject.org/files/ENCFF241ANT/@@download/ENCFF241ANT.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF248WUU bigBed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF738UCU 1709330 ENCODE Processing Pipeline 866122e51e7c4de37559ad7ac85c9cb6 https://www.encodeproject.org/files/ENCFF248WUU/@@download/ENCFF248WUU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF463OBY bigBed narrowPeak peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF536UKT 2017427 ENCODE Processing Pipeline 238ca90022b296264ff6bb4f6788c8e7 https://www.encodeproject.org/files/ENCFF463OBY/@@download/ENCFF463OBY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF979YDB bigWig signal p-value ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF884GIM 409360915 ENCODE Processing Pipeline 42c48c8079d8ea6ce85604fc63271332 https://www.encodeproject.org/files/ENCFF979YDB/@@download/ENCFF979YDB.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF265YXJ bigWig signal p-value ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF553VHF 229764274 ENCODE Processing Pipeline b6ac93c7a6efbb3c588e286e9efd40fa https://www.encodeproject.org/files/ENCFF265YXJ/@@download/ENCFF265YXJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF082EKF bigWig signal p-value ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF553VHF, ENCFF884GIM 394130228 ENCODE Processing Pipeline 182f0485fe6f4d2668af3cbd2fc73e0a https://www.encodeproject.org/files/ENCFF082EKF/@@download/ENCFF082EKF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF648YTO bigWig fold change over control ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF884GIM 410163523 ENCODE Processing Pipeline d6a9655be0019d1f534f40c491183ada https://www.encodeproject.org/files/ENCFF648YTO/@@download/ENCFF648YTO.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF447PBP bigWig fold change over control ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF553VHF 304769350 ENCODE Processing Pipeline 914ac29f6127eaf2619fd6f8d21412a1 https://www.encodeproject.org/files/ENCFF447PBP/@@download/ENCFF447PBP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF170JVA bigWig fold change over control ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF553VHF, ENCFF884GIM 627750000 ENCODE Processing Pipeline 1bdc661d81f584b4793bb91232060896 https://www.encodeproject.org/files/ENCFF170JVA/@@download/ENCFF170JVA.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF192VXE bed narrowPeak replicated peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069BKY, ENCFF536UKT, ENCFF738UCU 635895 ENCODE Processing Pipeline 54566e9eea0c30bbd26974e353f899a1 https://www.encodeproject.org/files/ENCFF192VXE/@@download/ENCFF192VXE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF448JNF bigBed narrowPeak replicated peaks ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF192VXE 1665704 ENCODE Processing Pipeline e83224f20aecb1800e92a46f0e7ae898 https://www.encodeproject.org/files/ENCFF448JNF/@@download/ENCFF448JNF.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF178CKG fastq reads ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1246276677 Bing Ren, UCSD 2926c2395844f49db55a824b187aff14 SRA:SRR3652104 https://www.encodeproject.org/files/ENCFF178CKG/@@download/ENCFF178CKG.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF453SAO fastq reads ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1016324381 Bing Ren, UCSD 90ee0b9f2db6bc415f47128f5f792742 SRA:SRR3652106 https://www.encodeproject.org/files/ENCFF453SAO/@@download/ENCFF453SAO.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF342FDU fastq reads ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2402847600 Bing Ren, UCSD 7e1741dc04045a0368a9f4adf51d8f51 SRA:SRR3652105 https://www.encodeproject.org/files/ENCFF342FDU/@@download/ENCFF342FDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF070FGR fastq reads ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2469171667 Bing Ren, UCSD 814155735a7a9324aea4193e2b36b61d SRA:SRR3652107 https://www.encodeproject.org/files/ENCFF070FGR/@@download/ENCFF070FGR.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF740DUF bam alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF178CKG, ENCFF342FDU, ENCFF806TVZ 3085533933 ENCODE Processing Pipeline af8a3ba867bd6099644c680d9da695f5 https://www.encodeproject.org/files/ENCFF740DUF/@@download/ENCFF740DUF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF368ENA bam alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF070FGR, ENCFF453SAO, ENCFF806TVZ 3014652594 ENCODE Processing Pipeline 49918c2f707a0d81090c005a141d48ea https://www.encodeproject.org/files/ENCFF368ENA/@@download/ENCFF368ENA.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF026MUS bed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF740DUF 1508672 ENCODE Processing Pipeline 1926a483f27c61403e73fafdc2b5c84b https://www.encodeproject.org/files/ENCFF026MUS/@@download/ENCFF026MUS.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF693MMO bed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF368ENA, ENCFF740DUF 1338241 ENCODE Processing Pipeline 5256959db143b077f9451524841a1dfc https://www.encodeproject.org/files/ENCFF693MMO/@@download/ENCFF693MMO.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF648WJQ bed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF368ENA 1426370 ENCODE Processing Pipeline d8fe6e86ba3422f5e37464a261366780 https://www.encodeproject.org/files/ENCFF648WJQ/@@download/ENCFF648WJQ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF115MHZ bigBed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF693MMO 3363117 ENCODE Processing Pipeline dc4280243f9f91d533aa1f01dc8ff40a https://www.encodeproject.org/files/ENCFF115MHZ/@@download/ENCFF115MHZ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF360WME bigBed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF648WJQ 3772497 ENCODE Processing Pipeline c17f789e17700f7d2dc63bcad803ee20 https://www.encodeproject.org/files/ENCFF360WME/@@download/ENCFF360WME.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF482GUC bigBed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF026MUS 3988612 ENCODE Processing Pipeline 6bd11d1c8ee05bac76d1a8501b7f2281 https://www.encodeproject.org/files/ENCFF482GUC/@@download/ENCFF482GUC.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF178KVY bigWig signal p-value ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF740DUF 1102246276 ENCODE Processing Pipeline e64aa58c4f5687a9b0731ca293055565 https://www.encodeproject.org/files/ENCFF178KVY/@@download/ENCFF178KVY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF508YCK bigWig signal p-value ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF368ENA 1150263848 ENCODE Processing Pipeline d74f2e374fee39e0bb1d292aab18106f https://www.encodeproject.org/files/ENCFF508YCK/@@download/ENCFF508YCK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF723YCP bigWig signal p-value ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF368ENA, ENCFF740DUF 1409997947 ENCODE Processing Pipeline 10b10d87b1e4d4b83512e161bb47261e https://www.encodeproject.org/files/ENCFF723YCP/@@download/ENCFF723YCP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF733MFN bigWig fold change over control ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF740DUF 1194134531 ENCODE Processing Pipeline 97f6f66d91ccfedee64bdaa903f614fb https://www.encodeproject.org/files/ENCFF733MFN/@@download/ENCFF733MFN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF576EGG bigWig fold change over control ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF368ENA 1222794640 ENCODE Processing Pipeline 1e9d8bb4c891d50db274ad0ba106db6d https://www.encodeproject.org/files/ENCFF576EGG/@@download/ENCFF576EGG.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF563NQJ bigWig fold change over control ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF368ENA, ENCFF740DUF 1708769363 ENCODE Processing Pipeline 9d8e1858e38ae568ef91dec7ff492197 https://www.encodeproject.org/files/ENCFF563NQJ/@@download/ENCFF563NQJ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF462FLA bigBed narrowPeak replicated peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF298MND 2071572 ENCODE Processing Pipeline 6f8852e6db8eb7485613dea56a14f199 https://www.encodeproject.org/files/ENCFF462FLA/@@download/ENCFF462FLA.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF298MND bed narrowPeak replicated peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF026MUS, ENCFF648WJQ, ENCFF693MMO 1021637 ENCODE Processing Pipeline ed2c829a48a34cf1cc0a6fce0f26c478 https://www.encodeproject.org/files/ENCFF298MND/@@download/ENCFF298MND.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF788FSN bam unfiltered alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF070FGR, ENCFF453SAO 4161737909 ENCODE Processing Pipeline eff910043c31ffb77b38565ba6bff09a https://www.encodeproject.org/files/ENCFF788FSN/@@download/ENCFF788FSN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF816JFG bam unfiltered alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF178CKG, ENCFF342FDU 4343345912 ENCODE Processing Pipeline 3426bc8e9abdaa6d8ea24af527a5f8c5 https://www.encodeproject.org/files/ENCFF816JFG/@@download/ENCFF816JFG.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF275AKZ bam alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF178CKG, ENCFF342FDU 3084979730 ENCODE Processing Pipeline 61b18b57082f5fc070ee1d6213e2f41f https://www.encodeproject.org/files/ENCFF275AKZ/@@download/ENCFF275AKZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF420BPA bam alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF070FGR, ENCFF453SAO 3014144956 ENCODE Processing Pipeline 490035e77ddbc2ce84e9b832fcc85657 https://www.encodeproject.org/files/ENCFF420BPA/@@download/ENCFF420BPA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF780GBV bed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF275AKZ, ENCFF487AIV, ENCFF642FOT 1501744 ENCODE Processing Pipeline 1bb6881132667a30607114dd6ea700fb https://www.encodeproject.org/files/ENCFF780GBV/@@download/ENCFF780GBV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF795QFN bed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF420BPA, ENCFF642FOT 907153 ENCODE Processing Pipeline 01feb1c167f1cf588e4bfd3255ff6a2f https://www.encodeproject.org/files/ENCFF795QFN/@@download/ENCFF795QFN.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF424FPP bed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF275AKZ, ENCFF420BPA, ENCFF487AIV, ENCFF642FOT 1618646 ENCODE Processing Pipeline 8d3518c6642019310d18bd01a9ab9369 https://www.encodeproject.org/files/ENCFF424FPP/@@download/ENCFF424FPP.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF147EOW bigBed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF795QFN 2385505 ENCODE Processing Pipeline ae7c977d5f59752fe83596470b05a595 https://www.encodeproject.org/files/ENCFF147EOW/@@download/ENCFF147EOW.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF078YWO bigBed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF780GBV 3970186 ENCODE Processing Pipeline 90b486526d7ece33eee0e8ed39ff95bb https://www.encodeproject.org/files/ENCFF078YWO/@@download/ENCFF078YWO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF138GQW bigBed narrowPeak peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF424FPP 4084415 ENCODE Processing Pipeline 46750b3d217dbbeb2d550902d10d1038 https://www.encodeproject.org/files/ENCFF138GQW/@@download/ENCFF138GQW.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF909YOX bigWig signal p-value ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF275AKZ, ENCFF487AIV, ENCFF642FOT 1156907344 ENCODE Processing Pipeline 701c4041e754ddb55da413123e7b2102 https://www.encodeproject.org/files/ENCFF909YOX/@@download/ENCFF909YOX.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF359ZWA bigWig signal p-value ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF420BPA, ENCFF642FOT 904425893 ENCODE Processing Pipeline 3717212cba65e2ddb51f20fd7142a3cb https://www.encodeproject.org/files/ENCFF359ZWA/@@download/ENCFF359ZWA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF822UTP bigWig signal p-value ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF275AKZ, ENCFF420BPA, ENCFF487AIV, ENCFF642FOT 1611066363 ENCODE Processing Pipeline 54cda52c1987f9d84853efc4e03fcdfb https://www.encodeproject.org/files/ENCFF822UTP/@@download/ENCFF822UTP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF052EJN bigWig fold change over control ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF275AKZ, ENCFF487AIV, ENCFF642FOT 1279507979 ENCODE Processing Pipeline bfa759cc1c7a54163b0544deabd81b4b https://www.encodeproject.org/files/ENCFF052EJN/@@download/ENCFF052EJN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF938GXU bigWig fold change over control ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF420BPA, ENCFF642FOT 1010755626 ENCODE Processing Pipeline 76334d2d48fb2d5d72215833e5b5e295 https://www.encodeproject.org/files/ENCFF938GXU/@@download/ENCFF938GXU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF044FTG bigWig fold change over control ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF275AKZ, ENCFF420BPA, ENCFF487AIV, ENCFF642FOT 1791321778 ENCODE Processing Pipeline fcf6cfcee8437312dc34a25cd78507ed https://www.encodeproject.org/files/ENCFF044FTG/@@download/ENCFF044FTG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF531ZQR bed narrowPeak replicated peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF424FPP, ENCFF780GBV, ENCFF795QFN 979990 ENCODE Processing Pipeline 2e56a05bd03269d971590a2d936e2b63 https://www.encodeproject.org/files/ENCFF531ZQR/@@download/ENCFF531ZQR.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF251TMX bigBed narrowPeak replicated peaks ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF531ZQR 1964471 ENCODE Processing Pipeline a05e93f67ee44ea7d6e854682561b1d5 https://www.encodeproject.org/files/ENCFF251TMX/@@download/ENCFF251TMX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001JVV bam alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JWC 508742587 Bing Ren, UCSD 8140faa4f8523a53898b4a9b6aba242c https://www.encodeproject.org/files/ENCFF001JVV/@@download/ENCFF001JVV.bam mm9 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001JVW bigBed broadPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XVQ 2211583 Bing Ren, UCSD 8ec2545c1d64950e437f22ea9c1a5667 https://www.encodeproject.org/files/ENCFF001JVW/@@download/ENCFF001JVW.bigBed mm9 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001JVX bigWig signal ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JVV, ENCFF001JVY 63097100 Bing Ren, UCSD ec93cf1c8963d657cde766b5242ee4bb https://www.encodeproject.org/files/ENCFF001JVX/@@download/ENCFF001JVX.bigWig mm9 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001JVY bam alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JWI 1232842721 Bing Ren, UCSD 6bf5d64e180891db4518c3c95a9f8cd5 https://www.encodeproject.org/files/ENCFF001JVY/@@download/ENCFF001JVY.bam mm9 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001JWC fastq reads ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 30 single-ended 465479277 Bing Ren, UCSD 7f980ac49e1d30a3aa7366c44e98baf7 https://www.encodeproject.org/files/ENCFF001JWC/@@download/ENCFF001JWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JWW/ released low read length, inconsistent control read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001JWI fastq reads ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1168766120 Bing Ren, UCSD 0645a8f9e529f885a1692db7412b3201 https://www.encodeproject.org/files/ENCFF001JWI/@@download/ENCFF001JWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JWV/ released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001XVQ bed broadPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JVV, ENCFF001JVY 1202158 Bing Ren, UCSD 732007dd62cb43d3afaecf5925ad5c92 https://www.encodeproject.org/files/ENCFF001XVQ/@@download/ENCFF001XVQ.bed.gz mm9 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF411KCX bam unfiltered alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001JWC, ENCFF018NEO 549876392 ENCODE Processing Pipeline 83853f561b4477e69c6cbe9369e0e2c2 https://www.encodeproject.org/files/ENCFF411KCX/@@download/ENCFF411KCX.bam mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF117YGS bam unfiltered alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWI, ENCFF018NEO 1343955240 ENCODE Processing Pipeline 1634ad4bd6dcdc736226c25ffe07efc0 https://www.encodeproject.org/files/ENCFF117YGS/@@download/ENCFF117YGS.bam mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF607DVW bam alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001JWC, ENCFF018NEO 375972538 ENCODE Processing Pipeline a18f2e7dd828210bf28ba2dfb9547641 https://www.encodeproject.org/files/ENCFF607DVW/@@download/ENCFF607DVW.bam mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF316YNB bam alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWI, ENCFF018NEO 1031115162 ENCODE Processing Pipeline 6a1d8c27b15c422f7c984854e401ea3b https://www.encodeproject.org/files/ENCFF316YNB/@@download/ENCFF316YNB.bam mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF092PMU bed narrowPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF310NCX, ENCFF607DVW, ENCFF758PYU 2379303 ENCODE Processing Pipeline 2cb259a406242bb9e7b0843f9f743f82 https://www.encodeproject.org/files/ENCFF092PMU/@@download/ENCFF092PMU.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF705PDK bigBed narrowPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF101RIX 7777520 ENCODE Processing Pipeline b9e3b056ac42ce8d83cb2b97250713d6 https://www.encodeproject.org/files/ENCFF705PDK/@@download/ENCFF705PDK.bigBed mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF101RIX bed narrowPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF310NCX, ENCFF316YNB, ENCFF607DVW, ENCFF758PYU 2799257 ENCODE Processing Pipeline 19b05944d7239db46b0c88ddc7dec4e2 https://www.encodeproject.org/files/ENCFF101RIX/@@download/ENCFF101RIX.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF912QFG bigBed narrowPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF092PMU 5583558 ENCODE Processing Pipeline bf798f3e6e586a0f3ed005c40bdf5aa1 https://www.encodeproject.org/files/ENCFF912QFG/@@download/ENCFF912QFG.bigBed mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF016JRU bed narrowPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF310NCX, ENCFF316YNB, ENCFF758PYU 2965815 ENCODE Processing Pipeline f50ea70a0c4c39163cb6bd8583042984 https://www.encodeproject.org/files/ENCFF016JRU/@@download/ENCFF016JRU.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF856LBR bigBed narrowPeak peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF016JRU 8358113 ENCODE Processing Pipeline d744cb27f476ee7613971735fbcc47fc https://www.encodeproject.org/files/ENCFF856LBR/@@download/ENCFF856LBR.bigBed mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF772MWG bigWig signal p-value ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF310NCX, ENCFF607DVW, ENCFF758PYU 381915082 ENCODE Processing Pipeline cf410db2909ce725f0d26b7e810fcfd7 https://www.encodeproject.org/files/ENCFF772MWG/@@download/ENCFF772MWG.bigWig mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF339ABM bigWig signal p-value ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF310NCX, ENCFF316YNB, ENCFF758PYU 546443716 ENCODE Processing Pipeline e459455afb0484710f31fd9f76c2ef35 https://www.encodeproject.org/files/ENCFF339ABM/@@download/ENCFF339ABM.bigWig mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF520QIW bigWig signal p-value ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF310NCX, ENCFF316YNB, ENCFF607DVW, ENCFF758PYU 707522203 ENCODE Processing Pipeline 7fd1d3578a5971888c174ef7eed04450 https://www.encodeproject.org/files/ENCFF520QIW/@@download/ENCFF520QIW.bigWig mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF417HBT bigWig fold change over control ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF310NCX, ENCFF607DVW, ENCFF758PYU 274566257 ENCODE Processing Pipeline 9416ce66159db6a9709d3674f502f538 https://www.encodeproject.org/files/ENCFF417HBT/@@download/ENCFF417HBT.bigWig mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF555SBM bigWig fold change over control ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF310NCX, ENCFF316YNB, ENCFF758PYU 561954182 ENCODE Processing Pipeline c67e1ba638bd3c32ae7f70cccac2963d https://www.encodeproject.org/files/ENCFF555SBM/@@download/ENCFF555SBM.bigWig mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF494KRZ bigWig fold change over control ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF310NCX, ENCFF316YNB, ENCFF607DVW, ENCFF758PYU 689296017 ENCODE Processing Pipeline 8a35e09190d83372a3f2596a21b8079d https://www.encodeproject.org/files/ENCFF494KRZ/@@download/ENCFF494KRZ.bigWig mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF751NJI bed narrowPeak replicated peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF016JRU, ENCFF092PMU, ENCFF101RIX 2326312 ENCODE Processing Pipeline fc874a49cb431c2bcefb6d9de541a68f https://www.encodeproject.org/files/ENCFF751NJI/@@download/ENCFF751NJI.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF425DMN bigBed narrowPeak replicated peaks ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF751NJI 4830943 ENCODE Processing Pipeline 2120033cad8712407a0d476c2cd02ed8 https://www.encodeproject.org/files/ENCFF425DMN/@@download/ENCFF425DMN.bigBed mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF001NWH bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NXB 431195516 Michael Snyder, Stanford b2522631eee5acfa72755666b569edb5 https://www.encodeproject.org/files/ENCFF001NWH/@@download/ENCFF001NWH.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWI bigBed narrowPeak peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YJV 597079 Michael Snyder, Stanford 6057a992b7f88536a30552ec16d1d388 https://www.encodeproject.org/files/ENCFF001NWI/@@download/ENCFF001NWI.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWJ bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NXD 442914659 Michael Snyder, Stanford ccb8f5062879b755694dd04da89ab849 https://www.encodeproject.org/files/ENCFF001NWJ/@@download/ENCFF001NWJ.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWL bigWig signal ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NWH, ENCFF001NWJ 332071596 Michael Snyder, Stanford 2daa2fd113365e4d750ba3f44a5cd14f https://www.encodeproject.org/files/ENCFF001NWL/@@download/ENCFF001NWL.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXB fastq reads ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 856055810 Michael Snyder, Stanford 9551e07b32b081e6abb072e428d751ee https://www.encodeproject.org/files/ENCFF001NXB/@@download/ENCFF001NXB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXD fastq reads ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 932606529 Michael Snyder, Stanford e5a95b93924e21317079cfae7d5dc437 https://www.encodeproject.org/files/ENCFF001NXD/@@download/ENCFF001NXD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJV bed narrowPeak peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NWH, ENCFF001NWJ 224064 Michael Snyder, Stanford 613b26969752baa69877831961989f03 https://www.encodeproject.org/files/ENCFF001YJV/@@download/ENCFF001YJV.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF513DOZ bam unfiltered alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NXB, ENCFF018NEO 1016740949 ENCODE Processing Pipeline 98751ad70b2447043c81c2d0af607478 https://www.encodeproject.org/files/ENCFF513DOZ/@@download/ENCFF513DOZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF810ZMH bam unfiltered alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NXD, ENCFF018NEO 1100232396 ENCODE Processing Pipeline 65cfbbb83200f9eec2574a8804a22cd3 https://www.encodeproject.org/files/ENCFF810ZMH/@@download/ENCFF810ZMH.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF468ABY bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NXB, ENCFF018NEO 657483071 ENCODE Processing Pipeline c1a89b3306e8f3b9fdeccc940df7ccbe https://www.encodeproject.org/files/ENCFF468ABY/@@download/ENCFF468ABY.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF763EMQ bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NXD, ENCFF018NEO 699656272 ENCODE Processing Pipeline d34ed154a78f32a114e58bbebbe0fc41 https://www.encodeproject.org/files/ENCFF763EMQ/@@download/ENCFF763EMQ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF280LIZ bigWig signal p-value ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF468ABY, ENCFF763EMQ 309755333 ENCODE Processing Pipeline 4ced4f85def4b3113ad5d49ea201f9d7 https://www.encodeproject.org/files/ENCFF280LIZ/@@download/ENCFF280LIZ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF179HMP bed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF763EMQ 5356886 ENCODE Processing Pipeline eec962e44fb48fa735bbfd26bcc65f75 https://www.encodeproject.org/files/ENCFF179HMP/@@download/ENCFF179HMP.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF852CSV bigWig signal p-value ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF763EMQ 330345616 ENCODE Processing Pipeline 5400e0d42613915d261c8a735535ef4a https://www.encodeproject.org/files/ENCFF852CSV/@@download/ENCFF852CSV.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF382GMD bigBed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF188WWN 13003530 ENCODE Processing Pipeline 16be3ec5489a89d1df99baafcb05e7c4 https://www.encodeproject.org/files/ENCFF382GMD/@@download/ENCFF382GMD.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF897WMP bigBed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF179HMP 12862289 ENCODE Processing Pipeline a9e4d970bf737dd9391635d6bb2afc2b https://www.encodeproject.org/files/ENCFF897WMP/@@download/ENCFF897WMP.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF092ZHD bed narrowPeak conservative idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF166NPN, ENCFF179HMP, ENCFF188WWN, ENCFF547MET 410119 ENCODE Processing Pipeline 6c78c296b3500df32fbc6f9ba669a91f https://www.encodeproject.org/files/ENCFF092ZHD/@@download/ENCFF092ZHD.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF987CNG bed narrowPeak optimal idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF166NPN, ENCFF179HMP, ENCFF188WWN, ENCFF547MET 429279 ENCODE Processing Pipeline f62afc84822e9410855ed49187653559 https://www.encodeproject.org/files/ENCFF987CNG/@@download/ENCFF987CNG.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF199UPW bigWig fold change over control ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF468ABY 288323993 ENCODE Processing Pipeline 75dbc217548eee31e1ab2a5beda701e7 https://www.encodeproject.org/files/ENCFF199UPW/@@download/ENCFF199UPW.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF060EGQ bigWig fold change over control ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF468ABY, ENCFF763EMQ 511182620 ENCODE Processing Pipeline e56a1f081974fe59b0bca1853f3c3ad4 https://www.encodeproject.org/files/ENCFF060EGQ/@@download/ENCFF060EGQ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF057JVS bigWig fold change over control ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF763EMQ 318403563 ENCODE Processing Pipeline 15b32bcfc7d9e99471ea6d2603e8f89c https://www.encodeproject.org/files/ENCFF057JVS/@@download/ENCFF057JVS.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF715FYC bigWig signal p-value ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF468ABY 310000141 ENCODE Processing Pipeline 56f85d2b3a3f8442ff380f3e2495b965 https://www.encodeproject.org/files/ENCFF715FYC/@@download/ENCFF715FYC.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF644DDI bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF092ZHD 945460 ENCODE Processing Pipeline bb73cb5c819ac8a3d91f4c2555f15642 https://www.encodeproject.org/files/ENCFF644DDI/@@download/ENCFF644DDI.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF188WWN bed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF468ABY 5310690 ENCODE Processing Pipeline f7e2e034dfb41a51500377f349b132e5 https://www.encodeproject.org/files/ENCFF188WWN/@@download/ENCFF188WWN.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF166NPN bed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF468ABY, ENCFF763EMQ 5894964 ENCODE Processing Pipeline 8e26d1535df1ab05578ddbf2338fc877 https://www.encodeproject.org/files/ENCFF166NPN/@@download/ENCFF166NPN.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF114QPJ bigBed narrowPeak peaks and background as input for IDR ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF166NPN 13027462 ENCODE Processing Pipeline 56c571f2548c1a7e116a31dfb36c7273 https://www.encodeproject.org/files/ENCFF114QPJ/@@download/ENCFF114QPJ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF145MVS bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF987CNG 978267 ENCODE Processing Pipeline 7c3c01877445c89c86443d92084ca5c2 https://www.encodeproject.org/files/ENCFF145MVS/@@download/ENCFF145MVS.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001KLK bigBed broadPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE ENCFF001XXT 343230 Bing Ren, UCSD d452686b49740f3b2c80ca1f0db9bfff https://www.encodeproject.org/files/ENCFF001KLK/@@download/ENCFF001KLK.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF001KLJ bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLS 336888826 Bing Ren, UCSD 86f30fd55c7cb55ff757ccc939600f43 https://www.encodeproject.org/files/ENCFF001KLJ/@@download/ENCFF001KLJ.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF001KLL bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KLU 839652840 Bing Ren, UCSD aabb183ee85c3e31600c1643784aa9f8 https://www.encodeproject.org/files/ENCFF001KLL/@@download/ENCFF001KLL.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF001KLO bigWig signal ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 36021561 Bing Ren, UCSD fd76f00118ea1a7adc450d6546e52e05 https://www.encodeproject.org/files/ENCFF001KLO/@@download/ENCFF001KLO.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from insufficient read depth ENCFF001KLS fastq reads ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 370077068 Bing Ren, UCSD 9079894f311053b062b913f8605eb06c https://www.encodeproject.org/files/ENCFF001KLS/@@download/ENCFF001KLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNZ/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity insufficient read depth ENCFF001KLU fastq reads ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 842117721 Bing Ren, UCSD 41016cd2beb665a8b1cb5eae622ca958 https://www.encodeproject.org/files/ENCFF001KLU/@@download/ENCFF001KLU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOE/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF001XXT bed broadPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 225269 Bing Ren, UCSD 2ea70a200daa7d2605a1f7126d12afde https://www.encodeproject.org/files/ENCFF001XXT/@@download/ENCFF001XXT.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from insufficient read depth ENCFF504SBH bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KLU, ENCFF806TVZ 527588443 ENCODE Processing Pipeline 60f3042c003d4425ed79b48676820d3d https://www.encodeproject.org/files/ENCFF504SBH/@@download/ENCFF504SBH.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF019BXJ bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLS, ENCFF806TVZ 195688930 ENCODE Processing Pipeline 6fee101486c0000956354678460f6982 https://www.encodeproject.org/files/ENCFF019BXJ/@@download/ENCFF019BXJ.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF790SKY bam unfiltered alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLU, ENCFF018NEO 883522964 ENCODE Processing Pipeline 08b9cf0da4cf4fd152b1ddd53d7d30d0 https://www.encodeproject.org/files/ENCFF790SKY/@@download/ENCFF790SKY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF454XDE bam unfiltered alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KLS, ENCFF018NEO 340645530 ENCODE Processing Pipeline b31d7160d77db9c1dbad34c47f2675dc https://www.encodeproject.org/files/ENCFF454XDE/@@download/ENCFF454XDE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF831YQT bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KLS, ENCFF018NEO 195725123 ENCODE Processing Pipeline 5436bf0a9cbbfe3071873b228c349103 https://www.encodeproject.org/files/ENCFF831YQT/@@download/ENCFF831YQT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF704YYI bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLU, ENCFF018NEO 527517730 ENCODE Processing Pipeline 17d844e2277edac09db32bde6a2e7e22 https://www.encodeproject.org/files/ENCFF704YYI/@@download/ENCFF704YYI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF154KUK bed narrowPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF443AQP, ENCFF704YYI 885741 ENCODE Processing Pipeline 2c6f6828e09bb9cae3776e0cfb45aa03 https://www.encodeproject.org/files/ENCFF154KUK/@@download/ENCFF154KUK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF764JFL bigBed narrowPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF154KUK 2462723 ENCODE Processing Pipeline b0751d15c3e743be4055a372205a28b0 https://www.encodeproject.org/files/ENCFF764JFL/@@download/ENCFF764JFL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF020UWN bigBed narrowPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF373LWE 2044557 ENCODE Processing Pipeline 0f359e94c68e17120c0ba3e3a5c8d6b7 https://www.encodeproject.org/files/ENCFF020UWN/@@download/ENCFF020UWN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF916JTM bigBed narrowPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF806JWA 2321080 ENCODE Processing Pipeline 6d79070300069e4139b48dac0fc9b2d8 https://www.encodeproject.org/files/ENCFF916JTM/@@download/ENCFF916JTM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF147HKL bigWig signal p-value ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF443AQP, ENCFF704YYI 335619634 ENCODE Processing Pipeline 2862546388c73ad03d546b3386054136 https://www.encodeproject.org/files/ENCFF147HKL/@@download/ENCFF147HKL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF857LEB bigWig signal p-value ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF171WKN, ENCFF443AQP, ENCFF704YYI, ENCFF831YQT 440574141 ENCODE Processing Pipeline 507078f2710e6ef3d781b47be953e393 https://www.encodeproject.org/files/ENCFF857LEB/@@download/ENCFF857LEB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF373LWE bed narrowPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF171WKN, ENCFF443AQP, ENCFF831YQT 699739 ENCODE Processing Pipeline 68848785ff8a986e177fbb178643999e https://www.encodeproject.org/files/ENCFF373LWE/@@download/ENCFF373LWE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF806JWA bed narrowPeak peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF171WKN, ENCFF443AQP, ENCFF704YYI, ENCFF831YQT 847686 ENCODE Processing Pipeline b18a60aad94af230f80905ab80da2798 https://www.encodeproject.org/files/ENCFF806JWA/@@download/ENCFF806JWA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF757JMM bigWig signal p-value ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF171WKN, ENCFF443AQP, ENCFF831YQT 296950571 ENCODE Processing Pipeline e55a9dcc7d661d5a86d3d3ad5263fe22 https://www.encodeproject.org/files/ENCFF757JMM/@@download/ENCFF757JMM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF514ZOU bigWig fold change over control ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF443AQP, ENCFF704YYI 258866264 ENCODE Processing Pipeline a596d0115d50603ccd5bab231333cb4d https://www.encodeproject.org/files/ENCFF514ZOU/@@download/ENCFF514ZOU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF974YGE bigWig fold change over control ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF171WKN, ENCFF443AQP, ENCFF831YQT 76325959 ENCODE Processing Pipeline cd50e137842b34ef76b47e0a3419c7e5 https://www.encodeproject.org/files/ENCFF974YGE/@@download/ENCFF974YGE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF309BER bigWig fold change over control ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF171WKN, ENCFF443AQP, ENCFF704YYI, ENCFF831YQT 293538379 ENCODE Processing Pipeline cbb36189bcb1bba9b642d6341a336e90 https://www.encodeproject.org/files/ENCFF309BER/@@download/ENCFF309BER.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF719DDD bed narrowPeak replicated peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF154KUK, ENCFF373LWE, ENCFF806JWA 906491 ENCODE Processing Pipeline d5a635f1467b1a2068e5d7f16dcfffa1 https://www.encodeproject.org/files/ENCFF719DDD/@@download/ENCFF719DDD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF979VJG bigBed narrowPeak replicated peaks ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF719DDD 1897499 ENCODE Processing Pipeline c956224c81907c6f1191c8645525a9ef https://www.encodeproject.org/files/ENCFF979VJG/@@download/ENCFF979VJG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF848QQS fastq reads ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1340132558 Bing Ren, UCSD fc54c2417f5eaca35539f411de3e1aa6 SRA:SRR4235690 https://www.encodeproject.org/files/ENCFF848QQS/@@download/ENCFF848QQS.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released mild to moderate bottlenecking ENCFF483VRP fastq reads ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1150378978 Bing Ren, UCSD 558f8649f6b97448a5aa31dcd060e0b0 SRA:SRR4235689 https://www.encodeproject.org/files/ENCFF483VRP/@@download/ENCFF483VRP.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released mild to moderate bottlenecking ENCFF390QLO bam unfiltered alignments ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF848QQS 1801961830 ENCODE Processing Pipeline e2caa11736a92737abd8bf5493f59237 https://www.encodeproject.org/files/ENCFF390QLO/@@download/ENCFF390QLO.bam mm10 released mild to moderate bottlenecking ENCFF754BSB bam unfiltered alignments ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF483VRP 1593052247 ENCODE Processing Pipeline 7bbdd667ded0b4ba8b811bbad9b6451c https://www.encodeproject.org/files/ENCFF754BSB/@@download/ENCFF754BSB.bam mm10 released mild to moderate bottlenecking ENCFF847FKM bam alignments ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF483VRP 1241513468 ENCODE Processing Pipeline 20f079006abebb8ad9eb3eb7e324470f https://www.encodeproject.org/files/ENCFF847FKM/@@download/ENCFF847FKM.bam mm10 released mild to moderate bottlenecking ENCFF601EJB bam alignments ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF848QQS 1423709651 ENCODE Processing Pipeline 829f7eaaf8aac26250907b51e3ac9681 https://www.encodeproject.org/files/ENCFF601EJB/@@download/ENCFF601EJB.bam mm10 released mild to moderate bottlenecking ENCFF623SRL bed narrowPeak peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF601EJB, ENCFF847FKM, ENCFF887RXR 3127415 ENCODE Processing Pipeline 6afb581e42c7e3b829511c6837b07190 https://www.encodeproject.org/files/ENCFF623SRL/@@download/ENCFF623SRL.bed.gz mm10 released mild to moderate bottlenecking ENCFF545DRQ bigBed narrowPeak peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF865WAC 4383989 ENCODE Processing Pipeline 7fa5a0d6e32dbaaca679fa687a719dc6 https://www.encodeproject.org/files/ENCFF545DRQ/@@download/ENCFF545DRQ.bigBed mm10 released mild to moderate bottlenecking ENCFF865WAC bed narrowPeak peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF847FKM 2019889 ENCODE Processing Pipeline ed322783095819a73f7331ab878a11ca https://www.encodeproject.org/files/ENCFF865WAC/@@download/ENCFF865WAC.bed.gz mm10 released mild to moderate bottlenecking ENCFF859VYW bed narrowPeak peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF601EJB, ENCFF887RXR 2736356 ENCODE Processing Pipeline ef79342b13e62c3a2225bc721198c1a8 https://www.encodeproject.org/files/ENCFF859VYW/@@download/ENCFF859VYW.bed.gz mm10 released mild to moderate bottlenecking ENCFF366SPF bigBed narrowPeak peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF859VYW 7145413 ENCODE Processing Pipeline 4a286fb1268513b81ea0ec89f51a191a https://www.encodeproject.org/files/ENCFF366SPF/@@download/ENCFF366SPF.bigBed mm10 released mild to moderate bottlenecking ENCFF986HGQ bigBed narrowPeak peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF623SRL 8024032 ENCODE Processing Pipeline 2a245e75265599eb0beb6c1440fc7685 https://www.encodeproject.org/files/ENCFF986HGQ/@@download/ENCFF986HGQ.bigBed mm10 released mild to moderate bottlenecking ENCFF334ZVH bigWig signal p-value ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF601EJB, ENCFF887RXR 695768995 ENCODE Processing Pipeline 68d6739b1bf380c9236f157a531bde50 https://www.encodeproject.org/files/ENCFF334ZVH/@@download/ENCFF334ZVH.bigWig mm10 released mild to moderate bottlenecking ENCFF900JKS bigWig signal p-value ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF847FKM 642233690 ENCODE Processing Pipeline 22adce8db7a0417f883be1d4b80283cd https://www.encodeproject.org/files/ENCFF900JKS/@@download/ENCFF900JKS.bigWig mm10 released mild to moderate bottlenecking ENCFF208CCL bigWig fold change over control ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF847FKM 609662962 ENCODE Processing Pipeline 1b95b697d15157b338effaeac76e58af https://www.encodeproject.org/files/ENCFF208CCL/@@download/ENCFF208CCL.bigWig mm10 released mild to moderate bottlenecking ENCFF191KZH bigWig signal p-value ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF601EJB, ENCFF847FKM, ENCFF887RXR 974983616 ENCODE Processing Pipeline 38e0de1ffa0c5cba0dd1955979128f79 https://www.encodeproject.org/files/ENCFF191KZH/@@download/ENCFF191KZH.bigWig mm10 released mild to moderate bottlenecking ENCFF881KBC bigWig fold change over control ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF601EJB, ENCFF887RXR 706727237 ENCODE Processing Pipeline 96997dad5a4073ef63a5f7db7dc4c2c1 https://www.encodeproject.org/files/ENCFF881KBC/@@download/ENCFF881KBC.bigWig mm10 released mild to moderate bottlenecking ENCFF222TEU bigWig fold change over control ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF601EJB, ENCFF847FKM, ENCFF887RXR 1182859617 ENCODE Processing Pipeline 5a7e32c0a30309b7128997a321f2a4bc https://www.encodeproject.org/files/ENCFF222TEU/@@download/ENCFF222TEU.bigWig mm10 released mild to moderate bottlenecking ENCFF814SUK bed narrowPeak replicated peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF623SRL, ENCFF859VYW, ENCFF865WAC 2048479 ENCODE Processing Pipeline d4d9cf747543e97b7eac973467c30d22 https://www.encodeproject.org/files/ENCFF814SUK/@@download/ENCFF814SUK.bed.gz mm10 released mild to moderate bottlenecking ENCFF814UMJ bigBed narrowPeak replicated peaks ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF814SUK 4213829 ENCODE Processing Pipeline a9528427fe1e9d5364f6577190572cf1 https://www.encodeproject.org/files/ENCFF814UMJ/@@download/ENCFF814UMJ.bigBed mm10 released mild to moderate bottlenecking ENCFF765QAR fastq reads ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2734487936 Bing Ren, UCSD fa39ae86bb9c14b65d8baad3b19a07eb SRA:SRR3652071 https://www.encodeproject.org/files/ENCFF765QAR/@@download/ENCFF765QAR.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF647PIC fastq reads ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2858738507 Bing Ren, UCSD 77af25292c2bf7c535ae93838e8ca3d3 SRA:SRR3652069 https://www.encodeproject.org/files/ENCFF647PIC/@@download/ENCFF647PIC.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF241ENQ bam alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF765QAR, ENCFF806TVZ 2227880518 ENCODE Processing Pipeline e840a86575c0878d099c71b02bcf9b0e https://www.encodeproject.org/files/ENCFF241ENQ/@@download/ENCFF241ENQ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF037XLR bam alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF647PIC, ENCFF806TVZ 2346354344 ENCODE Processing Pipeline a86c934e2c973f0becd79877001822af https://www.encodeproject.org/files/ENCFF037XLR/@@download/ENCFF037XLR.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF568OGC fastq reads ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 245483521 Bing Ren, UCSD e25699543f842f69c6b7497b3ac75d87 SRA:SRR3652070 https://www.encodeproject.org/files/ENCFF568OGC/@@download/ENCFF568OGC.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF732BVK fastq reads ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 372698945 Bing Ren, UCSD b2c4208f19ea1770cafa42ba59aeec6d SRA:SRR3652072 https://www.encodeproject.org/files/ENCFF732BVK/@@download/ENCFF732BVK.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF977IDX bam unfiltered alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF732BVK, ENCFF765QAR 3894091585 ENCODE Processing Pipeline 049ffe72de56fd11ac08ff41d89dc5ac https://www.encodeproject.org/files/ENCFF977IDX/@@download/ENCFF977IDX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF642FOT bam alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF568OGC, ENCFF647PIC 2608757952 ENCODE Processing Pipeline 460d39b70fc137cc5279f1e4a8825e72 https://www.encodeproject.org/files/ENCFF642FOT/@@download/ENCFF642FOT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF553MCQ bam unfiltered alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF568OGC, ENCFF647PIC 3861439444 ENCODE Processing Pipeline 4ce2389569baa698f84c1728afa5977b https://www.encodeproject.org/files/ENCFF553MCQ/@@download/ENCFF553MCQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF487AIV bam alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF732BVK, ENCFF765QAR 2614257160 ENCODE Processing Pipeline e1413084a4b7b187051f97866344931d https://www.encodeproject.org/files/ENCFF487AIV/@@download/ENCFF487AIV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF981WQT fastq reads ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2725702206 Bing Ren, UCSD 36c6e653f7c172d25b8845b2121e9e0f SRA:SRR4235833 https://www.encodeproject.org/files/ENCFF981WQT/@@download/ENCFF981WQT.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released ENCFF069IQM fastq reads ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2859695513 Bing Ren, UCSD 81605158734f70fdb1f1f256e5fdf6b9 SRA:SRR4235832 https://www.encodeproject.org/files/ENCFF069IQM/@@download/ENCFF069IQM.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released ENCFF695CDX bam unfiltered alignments ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF981WQT 3479415791 ENCODE Processing Pipeline 9b7526a0f2a9047d74794ce7b684cdaf https://www.encodeproject.org/files/ENCFF695CDX/@@download/ENCFF695CDX.bam mm10 released ENCFF919AFH bam unfiltered alignments ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF069IQM 3632878894 ENCODE Processing Pipeline 1bc02423170bb014d874ec006c95d88e https://www.encodeproject.org/files/ENCFF919AFH/@@download/ENCFF919AFH.bam mm10 released ENCFF626CWR bam alignments ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF981WQT 2818944841 ENCODE Processing Pipeline 3c36d8f6e75a0753bb8a2340f6d034a1 https://www.encodeproject.org/files/ENCFF626CWR/@@download/ENCFF626CWR.bam mm10 released ENCFF348TIN bam alignments ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF069IQM 2966948973 ENCODE Processing Pipeline ca22665139301987847a49a8b92fecf9 https://www.encodeproject.org/files/ENCFF348TIN/@@download/ENCFF348TIN.bam mm10 released ENCFF137SCH bed narrowPeak peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF348TIN, ENCFF689YLF, ENCFF778IFH 3591852 ENCODE Processing Pipeline 4a7debe8fdaeb82bd5e7cce3349b711c https://www.encodeproject.org/files/ENCFF137SCH/@@download/ENCFF137SCH.bed.gz mm10 released ENCFF410VSB bigBed narrowPeak peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF137SCH 9356523 ENCODE Processing Pipeline 87bc98557e87e87bac54c94da19b13c7 https://www.encodeproject.org/files/ENCFF410VSB/@@download/ENCFF410VSB.bigBed mm10 released ENCFF888QGN bigBed narrowPeak peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF490THF 7828176 ENCODE Processing Pipeline eeca9f2843afeddb899a8379cb0ed201 https://www.encodeproject.org/files/ENCFF888QGN/@@download/ENCFF888QGN.bigBed mm10 released ENCFF490THF bed narrowPeak peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF626CWR, ENCFF689YLF 2934805 ENCODE Processing Pipeline b7d95581e3ff6001ee7cae9131592e90 https://www.encodeproject.org/files/ENCFF490THF/@@download/ENCFF490THF.bed.gz mm10 released ENCFF350UJK bed narrowPeak peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF348TIN, ENCFF626CWR, ENCFF689YLF, ENCFF778IFH 3602188 ENCODE Processing Pipeline bd61ee3c16d25dd7a81ca2ff42354d77 https://www.encodeproject.org/files/ENCFF350UJK/@@download/ENCFF350UJK.bed.gz mm10 released ENCFF996NFS bigBed narrowPeak peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF350UJK 9411391 ENCODE Processing Pipeline 76b03c9a582affa077b93a1c91f211da https://www.encodeproject.org/files/ENCFF996NFS/@@download/ENCFF996NFS.bigBed mm10 released ENCFF781KAV bigWig signal p-value ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF348TIN, ENCFF689YLF, ENCFF778IFH 1118158702 ENCODE Processing Pipeline 08d745d33dd8b6cda15c1976c0088429 https://www.encodeproject.org/files/ENCFF781KAV/@@download/ENCFF781KAV.bigWig mm10 released ENCFF639QCL bigWig signal p-value ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF626CWR, ENCFF689YLF 936316314 ENCODE Processing Pipeline d5fba7bd4d5c6939ad2ddafdbd2b3c4f https://www.encodeproject.org/files/ENCFF639QCL/@@download/ENCFF639QCL.bigWig mm10 released ENCFF717WIV bigWig signal p-value ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF348TIN, ENCFF626CWR, ENCFF689YLF, ENCFF778IFH 1529884548 ENCODE Processing Pipeline 9f5f26b4433b1a0f3269f3db1590e52e https://www.encodeproject.org/files/ENCFF717WIV/@@download/ENCFF717WIV.bigWig mm10 released ENCFF229YUG bigWig fold change over control ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF348TIN, ENCFF689YLF, ENCFF778IFH 1203621909 ENCODE Processing Pipeline 8da97d2d61e485f5af374c1a79d94c74 https://www.encodeproject.org/files/ENCFF229YUG/@@download/ENCFF229YUG.bigWig mm10 released ENCFF862VES bigWig fold change over control ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF626CWR, ENCFF689YLF 1061822036 ENCODE Processing Pipeline 3412514cfb6a2fd5feb0f968d9a7ddd1 https://www.encodeproject.org/files/ENCFF862VES/@@download/ENCFF862VES.bigWig mm10 released ENCFF027RGW bed narrowPeak replicated peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF137SCH, ENCFF350UJK, ENCFF490THF 3587926 ENCODE Processing Pipeline a115675016ca6c25e36680a2bed1478d https://www.encodeproject.org/files/ENCFF027RGW/@@download/ENCFF027RGW.bed.gz mm10 released ENCFF625NET bigBed narrowPeak replicated peaks ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF027RGW 7217218 ENCODE Processing Pipeline 9e2f1a15f046f7e4d493447ac6c39794 https://www.encodeproject.org/files/ENCFF625NET/@@download/ENCFF625NET.bigBed mm10 released ENCFF739NQW bigWig fold change over control ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF348TIN, ENCFF626CWR, ENCFF689YLF, ENCFF778IFH 1746433992 ENCODE Processing Pipeline 1953c223f98398b3c845ff278ed586ff https://www.encodeproject.org/files/ENCFF739NQW/@@download/ENCFF739NQW.bigWig mm10 released ENCFF280YVK fastq reads ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2539122276 Bing Ren, UCSD ee80ce9868e7280df44f87b16840623d SRA:SRR4235836 https://www.encodeproject.org/files/ENCFF280YVK/@@download/ENCFF280YVK.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released ENCFF547MGW fastq reads ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2393795369 Bing Ren, UCSD e12e23c6af42b0681f55619d57218929 SRA:SRR4235837 https://www.encodeproject.org/files/ENCFF547MGW/@@download/ENCFF547MGW.fastq.gz Illumina HiSeq 4000 /files/ENCFF024PVD/ released ENCFF622KED bam unfiltered alignments ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF547MGW 3093925674 ENCODE Processing Pipeline fa0a12a3850165147e8ca4849cb09bf6 https://www.encodeproject.org/files/ENCFF622KED/@@download/ENCFF622KED.bam mm10 released ENCFF864FWU bam unfiltered alignments ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF280YVK 3284213919 ENCODE Processing Pipeline f88b86a9b4d7473c521dbf2ccd457e66 https://www.encodeproject.org/files/ENCFF864FWU/@@download/ENCFF864FWU.bam mm10 released ENCFF655WRL bam alignments ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF547MGW 2551144847 ENCODE Processing Pipeline 283d63bbfebb4ff4475a78f0bee80de7 https://www.encodeproject.org/files/ENCFF655WRL/@@download/ENCFF655WRL.bam mm10 released ENCFF017VRQ bam alignments ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF280YVK 2674467793 ENCODE Processing Pipeline 43a598f020ec055a7fb76d641a5c901a https://www.encodeproject.org/files/ENCFF017VRQ/@@download/ENCFF017VRQ.bam mm10 released ENCFF260UWU bed narrowPeak peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF655WRL, ENCFF869IME, ENCFF940GMW 4024682 ENCODE Processing Pipeline 926b64003d8b9ed04143d70a4708e441 https://www.encodeproject.org/files/ENCFF260UWU/@@download/ENCFF260UWU.bed.gz mm10 released ENCFF422IVO bed narrowPeak peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF017VRQ, ENCFF869IME 3332743 ENCODE Processing Pipeline 47f16120c68e9530c6de79128d9c60c9 https://www.encodeproject.org/files/ENCFF422IVO/@@download/ENCFF422IVO.bed.gz mm10 released ENCFF047FPM bed narrowPeak peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF017VRQ, ENCFF655WRL, ENCFF869IME, ENCFF940GMW 3989996 ENCODE Processing Pipeline dac7989cfc3d80bd3f62bbfd2713e1ea https://www.encodeproject.org/files/ENCFF047FPM/@@download/ENCFF047FPM.bed.gz mm10 released ENCFF951GIK bigBed narrowPeak peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF422IVO 8761192 ENCODE Processing Pipeline b9fcc7ab37b3b1ab9bd03cf08ea11aca https://www.encodeproject.org/files/ENCFF951GIK/@@download/ENCFF951GIK.bigBed mm10 released ENCFF343WCC bigBed narrowPeak peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF047FPM 10271997 ENCODE Processing Pipeline 06558277436ef617f7dd6736c6948358 https://www.encodeproject.org/files/ENCFF343WCC/@@download/ENCFF343WCC.bigBed mm10 released ENCFF950OSR bigBed narrowPeak peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF260UWU 10260329 ENCODE Processing Pipeline a40e9b97be9becacc081bb0e4a8c5e45 https://www.encodeproject.org/files/ENCFF950OSR/@@download/ENCFF950OSR.bigBed mm10 released ENCFF055KFC bigWig signal p-value ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF655WRL, ENCFF869IME, ENCFF940GMW 1001115777 ENCODE Processing Pipeline e72f60a6980265d45c956cb60fc7cea6 https://www.encodeproject.org/files/ENCFF055KFC/@@download/ENCFF055KFC.bigWig mm10 released ENCFF864PYU bigWig signal p-value ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF017VRQ, ENCFF869IME 921936113 ENCODE Processing Pipeline 0a46fc9b05aa39e5ae870ee33010ce6e https://www.encodeproject.org/files/ENCFF864PYU/@@download/ENCFF864PYU.bigWig mm10 released ENCFF364XPM bigWig signal p-value ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF017VRQ, ENCFF655WRL, ENCFF869IME, ENCFF940GMW 1585327315 ENCODE Processing Pipeline 55abfadc06543c88ae77143f56599faf https://www.encodeproject.org/files/ENCFF364XPM/@@download/ENCFF364XPM.bigWig mm10 released ENCFF273XDM bigWig fold change over control ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF655WRL, ENCFF869IME, ENCFF940GMW 1106477026 ENCODE Processing Pipeline 68ebeb914daf2f50663bc00758565353 https://www.encodeproject.org/files/ENCFF273XDM/@@download/ENCFF273XDM.bigWig mm10 released ENCFF702IYG bigWig fold change over control ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF017VRQ, ENCFF869IME 1014750214 ENCODE Processing Pipeline 029a462952cb63a402ab54eee096ed65 https://www.encodeproject.org/files/ENCFF702IYG/@@download/ENCFF702IYG.bigWig mm10 released ENCFF091TEN bigWig fold change over control ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF017VRQ, ENCFF655WRL, ENCFF869IME, ENCFF940GMW 1696863724 ENCODE Processing Pipeline 7dc968866accdb7fca3ea5ac77b19b62 https://www.encodeproject.org/files/ENCFF091TEN/@@download/ENCFF091TEN.bigWig mm10 released ENCFF724VQI bigBed narrowPeak replicated peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF053GHW 7173037 ENCODE Processing Pipeline 401a81dd84a8239db61d1f10b49cfad5 https://www.encodeproject.org/files/ENCFF724VQI/@@download/ENCFF724VQI.bigBed mm10 released ENCFF053GHW bed narrowPeak replicated peaks ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF047FPM, ENCFF260UWU, ENCFF422IVO 3585100 ENCODE Processing Pipeline eeb78336d7bf7e01a8a086551450d567 https://www.encodeproject.org/files/ENCFF053GHW/@@download/ENCFF053GHW.bed.gz mm10 released ENCFF646LXU fastq reads ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2683734275 Bing Ren, UCSD 949a9ec8df07b2949e3dd92a4409960d SRA:SRR4235601 https://www.encodeproject.org/files/ENCFF646LXU/@@download/ENCFF646LXU.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released ENCFF833BLU fastq reads ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2548574735 Bing Ren, UCSD e93d0a90586bed9eb970b9aba1d2e5d7 SRA:SRR4235602 https://www.encodeproject.org/files/ENCFF833BLU/@@download/ENCFF833BLU.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released ENCFF228TFR bam unfiltered alignments ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF646LXU 3480363343 ENCODE Processing Pipeline 9fd587a981f914365995f191584b118d https://www.encodeproject.org/files/ENCFF228TFR/@@download/ENCFF228TFR.bam mm10 released ENCFF294AHD bam unfiltered alignments ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF833BLU 3339893620 ENCODE Processing Pipeline f5a6928b5f0880217ff9fb2014d435b5 https://www.encodeproject.org/files/ENCFF294AHD/@@download/ENCFF294AHD.bam mm10 released ENCFF398EKL bam alignments ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF646LXU 2827607747 ENCODE Processing Pipeline b872f0a3f7e27401206ac0592663525d https://www.encodeproject.org/files/ENCFF398EKL/@@download/ENCFF398EKL.bam mm10 released ENCFF975XHS bam alignments ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF833BLU 2650788551 ENCODE Processing Pipeline 2535b87f0def01f3d5d9a0d68ed8f3e2 https://www.encodeproject.org/files/ENCFF975XHS/@@download/ENCFF975XHS.bam mm10 released ENCFF396ZWJ bed narrowPeak peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF398EKL, ENCFF531DRS 3186022 ENCODE Processing Pipeline 340e6751d3b24ece53204b1f127f7153 https://www.encodeproject.org/files/ENCFF396ZWJ/@@download/ENCFF396ZWJ.bed.gz mm10 released ENCFF940FXB bigWig signal p-value ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF398EKL, ENCFF531DRS 940723986 ENCODE Processing Pipeline f2ea4dd14573f8c74f3dfb1b36be787f https://www.encodeproject.org/files/ENCFF940FXB/@@download/ENCFF940FXB.bigWig mm10 released ENCFF745EIA bigWig signal p-value ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF398EKL, ENCFF531DRS, ENCFF975XHS 1607324995 ENCODE Processing Pipeline 263ee9c72cf2a8ef59a3bb18d4e69c1f https://www.encodeproject.org/files/ENCFF745EIA/@@download/ENCFF745EIA.bigWig mm10 released ENCFF599KQE bigBed narrowPeak peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF091VTL 9507744 ENCODE Processing Pipeline 211becffaf3013945c82343296a5cbbd https://www.encodeproject.org/files/ENCFF599KQE/@@download/ENCFF599KQE.bigBed mm10 released ENCFF091VTL bed narrowPeak peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF398EKL, ENCFF531DRS, ENCFF975XHS 3663218 ENCODE Processing Pipeline bd58a935a8ffe89e8d21bfeec80c13b2 https://www.encodeproject.org/files/ENCFF091VTL/@@download/ENCFF091VTL.bed.gz mm10 released ENCFF186RTS bed narrowPeak peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF531DRS, ENCFF975XHS 3441014 ENCODE Processing Pipeline 9585cf650793eff22e62196ecb54be60 https://www.encodeproject.org/files/ENCFF186RTS/@@download/ENCFF186RTS.bed.gz mm10 released ENCFF529YIX bigBed narrowPeak peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF186RTS 9038239 ENCODE Processing Pipeline d4f3e3f8233e5cda62f1940790692a69 https://www.encodeproject.org/files/ENCFF529YIX/@@download/ENCFF529YIX.bigBed mm10 released ENCFF608SEZ bigBed narrowPeak peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF396ZWJ 8327162 ENCODE Processing Pipeline 98b6cee176c8b1af002153e932565e83 https://www.encodeproject.org/files/ENCFF608SEZ/@@download/ENCFF608SEZ.bigBed mm10 released ENCFF184REY bigWig signal p-value ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF531DRS, ENCFF975XHS 908646818 ENCODE Processing Pipeline 7159d6eb6199da948a4b2c9809cda11a https://www.encodeproject.org/files/ENCFF184REY/@@download/ENCFF184REY.bigWig mm10 released ENCFF213EBH bigWig fold change over control ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF531DRS, ENCFF975XHS 1166018319 ENCODE Processing Pipeline 2f4c0f4649f7a657d8bd9e50fbcb5d41 https://www.encodeproject.org/files/ENCFF213EBH/@@download/ENCFF213EBH.bigWig mm10 released ENCFF643JVV bigWig fold change over control ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF398EKL, ENCFF531DRS 1012646420 ENCODE Processing Pipeline d958d79f05bb1bfa7caa0d7e2dd7cfe0 https://www.encodeproject.org/files/ENCFF643JVV/@@download/ENCFF643JVV.bigWig mm10 released ENCFF624RPQ bed narrowPeak replicated peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF091VTL, ENCFF186RTS, ENCFF396ZWJ 3392827 ENCODE Processing Pipeline 1f02f799c576e26b094d422f0a4122dc https://www.encodeproject.org/files/ENCFF624RPQ/@@download/ENCFF624RPQ.bed.gz mm10 released ENCFF960CEA bigBed narrowPeak replicated peaks ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF624RPQ 6642935 ENCODE Processing Pipeline 6ae07d6c14ba4775d1c80a5a7ab78e24 https://www.encodeproject.org/files/ENCFF960CEA/@@download/ENCFF960CEA.bigBed mm10 released ENCFF920CEX bigWig fold change over control ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF398EKL, ENCFF531DRS, ENCFF975XHS 1734009410 ENCODE Processing Pipeline bcffc6586ff2be0422e4e72777837357 https://www.encodeproject.org/files/ENCFF920CEX/@@download/ENCFF920CEX.bigWig mm10 released ENCFF332VAG fastq reads ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2559652372 Bing Ren, UCSD a07cb6bc47d4c05eccca1d69bbc1ab22 SRA:SRR4235827 https://www.encodeproject.org/files/ENCFF332VAG/@@download/ENCFF332VAG.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF821JEP fastq reads ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 2186267063 Bing Ren, UCSD a742d48b7fcdd154e3f6d769b0214bbb SRA:SRR4235830 https://www.encodeproject.org/files/ENCFF821JEP/@@download/ENCFF821JEP.fastq.gz Illumina HiSeq 4000 /files/ENCFF366TEJ/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF686BRF fastq reads ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 3 50 single-ended 1312312309 Bing Ren, UCSD f068680ae5a4b0ce77595458df311b01 SRA:SRR4235828 https://www.encodeproject.org/files/ENCFF686BRF/@@download/ENCFF686BRF.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF066BLW fastq reads ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 2 50 single-ended 2258081981 Bing Ren, UCSD 0b0ce519565957e1b2a68b1202838c13 SRA:SRR4235829 https://www.encodeproject.org/files/ENCFF066BLW/@@download/ENCFF066BLW.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF966EIE fastq reads ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1470696319 Bing Ren, UCSD 1538bf26c55a7338e8213e561ad08eab SRA:SRR4235831 https://www.encodeproject.org/files/ENCFF966EIE/@@download/ENCFF966EIE.fastq.gz Illumina HiSeq 4000 /files/ENCFF366TEJ/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF567WAI bam unfiltered alignments ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF821JEP, ENCFF966EIE 4092116760 ENCODE Processing Pipeline bb3154b6b471a3f68f83bf0a04bc37c4 https://www.encodeproject.org/files/ENCFF567WAI/@@download/ENCFF567WAI.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF179RSO bam alignments ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF821JEP, ENCFF966EIE 1421898004 ENCODE Processing Pipeline db0fbe3b507165e0476c7adaa955d9e9 https://www.encodeproject.org/files/ENCFF179RSO/@@download/ENCFF179RSO.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF822BEG bam unfiltered alignments ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF066BLW, ENCFF332VAG, ENCFF686BRF 6670529618 ENCODE Processing Pipeline 22ab5d618d5d36f4a7eddf2836ab0fb7 https://www.encodeproject.org/files/ENCFF822BEG/@@download/ENCFF822BEG.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF553SUK bam alignments ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF066BLW, ENCFF332VAG, ENCFF686BRF 1893396059 ENCODE Processing Pipeline a653d0dbf8e2d25dd415cf939daab915 https://www.encodeproject.org/files/ENCFF553SUK/@@download/ENCFF553SUK.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF545HRL bed narrowPeak peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF179RSO, ENCFF181QWR, ENCFF344GQQ 2127085 ENCODE Processing Pipeline 377b2a0e2ca046205158bee36cdb9841 https://www.encodeproject.org/files/ENCFF545HRL/@@download/ENCFF545HRL.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF162YVJ bigBed narrowPeak peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF558TTY 4425074 ENCODE Processing Pipeline 1d13d9f8a7df828aac21bf3067bc378e https://www.encodeproject.org/files/ENCFF162YVJ/@@download/ENCFF162YVJ.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF558TTY bed narrowPeak peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF344GQQ, ENCFF553SUK 1858048 ENCODE Processing Pipeline 09014342ed9a44bbe80e2a81aa3d27d2 https://www.encodeproject.org/files/ENCFF558TTY/@@download/ENCFF558TTY.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF568ESH bed narrowPeak peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF179RSO, ENCFF181QWR, ENCFF344GQQ, ENCFF553SUK 2449806 ENCODE Processing Pipeline 542dc830d324936dfc3febddf751bb3d https://www.encodeproject.org/files/ENCFF568ESH/@@download/ENCFF568ESH.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF207FZP bigWig signal p-value ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF179RSO, ENCFF181QWR, ENCFF344GQQ 939694614 ENCODE Processing Pipeline d9226dd15abd2ca9be8c2d99e8891230 https://www.encodeproject.org/files/ENCFF207FZP/@@download/ENCFF207FZP.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF089ISN bigBed narrowPeak peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF568ESH 5723347 ENCODE Processing Pipeline a1dcd5d331524cdc804c50abde3ebd2b https://www.encodeproject.org/files/ENCFF089ISN/@@download/ENCFF089ISN.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF680KST bigBed narrowPeak peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF545HRL 4048102 ENCODE Processing Pipeline 22472378c388b9898a1728de94860027 https://www.encodeproject.org/files/ENCFF680KST/@@download/ENCFF680KST.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF445MCH bigWig signal p-value ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF344GQQ, ENCFF553SUK 867773598 ENCODE Processing Pipeline 0086b10ecaa37251339efa0d5e95b38d https://www.encodeproject.org/files/ENCFF445MCH/@@download/ENCFF445MCH.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF706MGI bigWig signal p-value ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF179RSO, ENCFF181QWR, ENCFF344GQQ, ENCFF553SUK 1101868198 ENCODE Processing Pipeline 2369cad1ca66d419dc4a767bb2a85928 https://www.encodeproject.org/files/ENCFF706MGI/@@download/ENCFF706MGI.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF782EKM bigWig fold change over control ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF179RSO, ENCFF181QWR, ENCFF344GQQ 882915834 ENCODE Processing Pipeline 02cbd5ccf8c7520f4ab1958ed3b050d5 https://www.encodeproject.org/files/ENCFF782EKM/@@download/ENCFF782EKM.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF034IJG bigWig fold change over control ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF344GQQ, ENCFF553SUK 1025661092 ENCODE Processing Pipeline 5f4ff353be0b2b464b0a663494da6920 https://www.encodeproject.org/files/ENCFF034IJG/@@download/ENCFF034IJG.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF898VDV bigWig fold change over control ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF179RSO, ENCFF181QWR, ENCFF344GQQ, ENCFF553SUK 1381634495 ENCODE Processing Pipeline 04946ba8220b02f79911a49e3408b535 https://www.encodeproject.org/files/ENCFF898VDV/@@download/ENCFF898VDV.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF475JXJ bed narrowPeak replicated peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF545HRL, ENCFF558TTY, ENCFF568ESH 1355440 ENCODE Processing Pipeline 87e7dd1622476e3f27563193a22d8141 https://www.encodeproject.org/files/ENCFF475JXJ/@@download/ENCFF475JXJ.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF889QDX bigBed narrowPeak replicated peaks ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF475JXJ 2667801 ENCODE Processing Pipeline 83bf11543437eb6867a2fdd4a949ddaa https://www.encodeproject.org/files/ENCFF889QDX/@@download/ENCFF889QDX.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF271ZOP fastq reads ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2868571893 Bing Ren, UCSD 8d67f2766c1cc1217da05584961ce294 SRA:SRR3653260 https://www.encodeproject.org/files/ENCFF271ZOP/@@download/ENCFF271ZOP.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released inconsistent platforms, control low read depth ENCFF906UIE fastq reads ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3451388618 Bing Ren, UCSD e9411febe5ff3cb97d4e0e4e99bf3215 SRA:SRR3653261 https://www.encodeproject.org/files/ENCFF906UIE/@@download/ENCFF906UIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released inconsistent platforms, control low read depth ENCFF101ECO bam alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF906UIE 3082984814 ENCODE Processing Pipeline 6e1a6ee7dd22a9b4c3d693a9dedf041e https://www.encodeproject.org/files/ENCFF101ECO/@@download/ENCFF101ECO.bam mm10-minimal archived inconsistent platforms, control low read depth ENCFF571SMD bam alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF271ZOP, ENCFF806TVZ 2649267220 ENCODE Processing Pipeline 6ff4c66c83d70b5b9484e3b317e8b6c5 https://www.encodeproject.org/files/ENCFF571SMD/@@download/ENCFF571SMD.bam mm10-minimal archived inconsistent platforms, control low read depth ENCFF371GWM bed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF101ECO, ENCFF314ZXJ, ENCFF571SMD 2744101 ENCODE Processing Pipeline 04113ed8b1d57bf03de4b37cf8b2201c https://www.encodeproject.org/files/ENCFF371GWM/@@download/ENCFF371GWM.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF670KZR bigBed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF371GWM 7544014 ENCODE Processing Pipeline 466cc72ab06a9d1fefcdeb1c0b5c1a8e https://www.encodeproject.org/files/ENCFF670KZR/@@download/ENCFF670KZR.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF454PEX bed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF101ECO, ENCFF314ZXJ 2735527 ENCODE Processing Pipeline 3cbf09a9a35ec1166536a935f375d5a9 https://www.encodeproject.org/files/ENCFF454PEX/@@download/ENCFF454PEX.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF818RUV bed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF314ZXJ, ENCFF571SMD 2862142 ENCODE Processing Pipeline 26d6a20f4f4560ad8bf25b810ba6f6e9 https://www.encodeproject.org/files/ENCFF818RUV/@@download/ENCFF818RUV.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF529CKB bigBed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF454PEX 7591389 ENCODE Processing Pipeline df5b38c1f4269aeb544e95ab264b9d2a https://www.encodeproject.org/files/ENCFF529CKB/@@download/ENCFF529CKB.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF664EGL bigBed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF818RUV 7934634 ENCODE Processing Pipeline d043c971a94238ad1923a6a0b6631fc1 https://www.encodeproject.org/files/ENCFF664EGL/@@download/ENCFF664EGL.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF614NNR bigWig signal p-value ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF314ZXJ, ENCFF571SMD 973401853 ENCODE Processing Pipeline f75a4ee3a7aca595126818c126fb1079 https://www.encodeproject.org/files/ENCFF614NNR/@@download/ENCFF614NNR.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF038EDO bigWig signal p-value ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF101ECO, ENCFF314ZXJ 1209511500 ENCODE Processing Pipeline 52a264c15baeddcd819522e93b96a8aa https://www.encodeproject.org/files/ENCFF038EDO/@@download/ENCFF038EDO.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF035FDZ bigWig signal p-value ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF101ECO, ENCFF314ZXJ, ENCFF571SMD 1310713138 ENCODE Processing Pipeline ea46a7b35692036d646c7a58ba79ec5a https://www.encodeproject.org/files/ENCFF035FDZ/@@download/ENCFF035FDZ.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF426ERL bigWig fold change over control ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF314ZXJ, ENCFF571SMD 1099188620 ENCODE Processing Pipeline 72de0a2667a7209dfe33a4802a25267f https://www.encodeproject.org/files/ENCFF426ERL/@@download/ENCFF426ERL.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF038BKC bigWig fold change over control ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF101ECO, ENCFF314ZXJ 1183042251 ENCODE Processing Pipeline cefe1efefa2e9633e2be88873cc7fee5 https://www.encodeproject.org/files/ENCFF038BKC/@@download/ENCFF038BKC.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF493LAP bigWig fold change over control ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082TGD, ENCFF101ECO, ENCFF314ZXJ, ENCFF571SMD 1643916030 ENCODE Processing Pipeline ef81066933531a8dd6cca6f12ae772ce https://www.encodeproject.org/files/ENCFF493LAP/@@download/ENCFF493LAP.bigWig mm10-minimal archived inconsistent platforms, control low read depth ENCFF305ZWP bed narrowPeak replicated peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF371GWM, ENCFF454PEX, ENCFF818RUV 2892776 ENCODE Processing Pipeline 3853e76460a3105fa6982bda1a273c48 https://www.encodeproject.org/files/ENCFF305ZWP/@@download/ENCFF305ZWP.bed.gz mm10-minimal archived inconsistent platforms, control low read depth ENCFF242ZZC bigBed narrowPeak replicated peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF305ZWP 5922042 ENCODE Processing Pipeline 532b3e34c1d557398c757b6692b1a57d https://www.encodeproject.org/files/ENCFF242ZZC/@@download/ENCFF242ZZC.bigBed mm10-minimal archived inconsistent platforms, control low read depth ENCFF273ULV bam unfiltered alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF906UIE 4092441301 ENCODE Processing Pipeline c6b7bda3c2bafb567ef8dd177df6ff8e https://www.encodeproject.org/files/ENCFF273ULV/@@download/ENCFF273ULV.bam mm10 released inconsistent platforms, control low read depth ENCFF763HAF bam unfiltered alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF271ZOP 3428155132 ENCODE Processing Pipeline a2ebc7b42e260c8fec3c3baf46b5b151 https://www.encodeproject.org/files/ENCFF763HAF/@@download/ENCFF763HAF.bam mm10 released inconsistent platforms, control low read depth ENCFF989KUF bam alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF271ZOP 2648771564 ENCODE Processing Pipeline c4fee32501638f1d86519b1f36c9e19c https://www.encodeproject.org/files/ENCFF989KUF/@@download/ENCFF989KUF.bam mm10 released inconsistent platforms, control low read depth ENCFF891VNO bam alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF906UIE 3082434807 ENCODE Processing Pipeline 0e0fb43ac5431cf8f359d5ca5ea6bdfa https://www.encodeproject.org/files/ENCFF891VNO/@@download/ENCFF891VNO.bam mm10 released inconsistent platforms, control low read depth ENCFF007YFI bed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF891VNO 2142042 ENCODE Processing Pipeline d1611e7189e96ca02bf07cf5924d3329 https://www.encodeproject.org/files/ENCFF007YFI/@@download/ENCFF007YFI.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF066FVS bed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF615JIE, ENCFF989KUF 2854082 ENCODE Processing Pipeline 070327a592275911379effa49e1f52bd https://www.encodeproject.org/files/ENCFF066FVS/@@download/ENCFF066FVS.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF873KLW bed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF615JIE, ENCFF891VNO, ENCFF989KUF 3106370 ENCODE Processing Pipeline 6c8095ab18b44e758d9922d6253b4e49 https://www.encodeproject.org/files/ENCFF873KLW/@@download/ENCFF873KLW.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF957YTL bigBed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF066FVS 7935088 ENCODE Processing Pipeline 27b2b109b1fc37b40b5821113c26426a https://www.encodeproject.org/files/ENCFF957YTL/@@download/ENCFF957YTL.bigBed mm10 released inconsistent platforms, control low read depth ENCFF344KBH bigBed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF007YFI 6080475 ENCODE Processing Pipeline ff94da4cb99024d1d656bb55bc9145df https://www.encodeproject.org/files/ENCFF344KBH/@@download/ENCFF344KBH.bigBed mm10 released inconsistent platforms, control low read depth ENCFF277LCO bigBed narrowPeak peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF873KLW 8514067 ENCODE Processing Pipeline 67c1235fa9553bea21b1e7ea4e6ea2cf https://www.encodeproject.org/files/ENCFF277LCO/@@download/ENCFF277LCO.bigBed mm10 released inconsistent platforms, control low read depth ENCFF021UWH bigWig signal p-value ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF615JIE, ENCFF989KUF 1092626901 ENCODE Processing Pipeline 0e1ac4056d5af0a4881cd356478f7df7 https://www.encodeproject.org/files/ENCFF021UWH/@@download/ENCFF021UWH.bigWig mm10 released inconsistent platforms, control low read depth ENCFF311ETL bigWig signal p-value ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF891VNO 857401711 ENCODE Processing Pipeline 697dd46adf57fdd0e6984da317ccf57c https://www.encodeproject.org/files/ENCFF311ETL/@@download/ENCFF311ETL.bigWig mm10 released inconsistent platforms, control low read depth ENCFF558XZX bigWig signal p-value ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF615JIE, ENCFF891VNO, ENCFF989KUF 1620480426 ENCODE Processing Pipeline e25387f5a71293b4c48c709ecb07f004 https://www.encodeproject.org/files/ENCFF558XZX/@@download/ENCFF558XZX.bigWig mm10 released inconsistent platforms, control low read depth ENCFF611XUL bigWig fold change over control ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF615JIE, ENCFF989KUF 1188058910 ENCODE Processing Pipeline 833686fcc5320b05f60a11f3627510ab https://www.encodeproject.org/files/ENCFF611XUL/@@download/ENCFF611XUL.bigWig mm10 released inconsistent platforms, control low read depth ENCFF671YUS bigWig fold change over control ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF891VNO 981789425 ENCODE Processing Pipeline 9edd79bbd3dc96ac3d2d22c202dd9464 https://www.encodeproject.org/files/ENCFF671YUS/@@download/ENCFF671YUS.bigWig mm10 released inconsistent platforms, control low read depth ENCFF632RYE bigWig fold change over control ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF615JIE, ENCFF891VNO, ENCFF989KUF 1768055685 ENCODE Processing Pipeline 8a26ec88d770b92eb428b54b3d8be7f9 https://www.encodeproject.org/files/ENCFF632RYE/@@download/ENCFF632RYE.bigWig mm10 released inconsistent platforms, control low read depth ENCFF524PYT bed narrowPeak replicated peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF007YFI, ENCFF066FVS, ENCFF873KLW 2792332 ENCODE Processing Pipeline 54ffab951f4260b0284456e449a5768e https://www.encodeproject.org/files/ENCFF524PYT/@@download/ENCFF524PYT.bed.gz mm10 released inconsistent platforms, control low read depth ENCFF427MDD bigBed narrowPeak replicated peaks ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF524PYT 5611484 ENCODE Processing Pipeline b0914ddea1ec24f3a5cbe472a20410cc https://www.encodeproject.org/files/ENCFF427MDD/@@download/ENCFF427MDD.bigBed mm10 released inconsistent platforms, control low read depth ENCFF564ILE fastq reads ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2083657111 Bing Ren, UCSD 5f13e0be9233ab0edc0f6bd40dd02e1f SRA:SRR3653141 https://www.encodeproject.org/files/ENCFF564ILE/@@download/ENCFF564ILE.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF067AWT fastq reads ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 181026238 Bing Ren, UCSD e68e204702e1870c7699c24ae5ee8776 SRA:SRR3653138 https://www.encodeproject.org/files/ENCFF067AWT/@@download/ENCFF067AWT.fastq.gz Illumina HiSeq 2500 /files/ENCFF511ESM/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF789KSH fastq reads ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2078631802 Bing Ren, UCSD 6329da092fb0203b91cce3de13e08852 SRA:SRR3653139 https://www.encodeproject.org/files/ENCFF789KSH/@@download/ENCFF789KSH.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF153OPW fastq reads ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1318137651 Bing Ren, UCSD 9e6cb69ebe87d812ea2c31bf63e57b6a SRA:SRR3653142 https://www.encodeproject.org/files/ENCFF153OPW/@@download/ENCFF153OPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF055JSD fastq reads ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 993068015 Bing Ren, UCSD d958e8afa2b09ae7c568f21ae8a9ff24 SRA:SRR3653140 https://www.encodeproject.org/files/ENCFF055JSD/@@download/ENCFF055JSD.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF753ZZM bam alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF153OPW, ENCFF564ILE, ENCFF806TVZ 2883047860 ENCODE Processing Pipeline 809bf921d930e9cc96f27c9bfc0f5a47 https://www.encodeproject.org/files/ENCFF753ZZM/@@download/ENCFF753ZZM.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF603JXH bam alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF055JSD, ENCFF067AWT, ENCFF789KSH, ENCFF806TVZ 2748419655 ENCODE Processing Pipeline 262ef9caea576937989d0d42c119b31e https://www.encodeproject.org/files/ENCFF603JXH/@@download/ENCFF603JXH.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF943OHB bed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF603JXH, ENCFF949WTQ 1403791 ENCODE Processing Pipeline 80bf0c5dd6f81f62dc7dcf2fc85e0156 https://www.encodeproject.org/files/ENCFF943OHB/@@download/ENCFF943OHB.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF310CIW bigBed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF943OHB 2884971 ENCODE Processing Pipeline 66e2b947d9626625111059655c699ef6 https://www.encodeproject.org/files/ENCFF310CIW/@@download/ENCFF310CIW.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF663ZVP bed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF753ZZM, ENCFF949WTQ 860764 ENCODE Processing Pipeline 3e592caaf3c9e9513ff38da111550954 https://www.encodeproject.org/files/ENCFF663ZVP/@@download/ENCFF663ZVP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF222WBN bed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF603JXH, ENCFF753ZZM, ENCFF949WTQ 930591 ENCODE Processing Pipeline b5b9cfa6d0a5075448438d7c84685c08 https://www.encodeproject.org/files/ENCFF222WBN/@@download/ENCFF222WBN.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF751EUI bigBed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF663ZVP 1947247 ENCODE Processing Pipeline bf2396cc0e8659f2f43221cf7c43f45a https://www.encodeproject.org/files/ENCFF751EUI/@@download/ENCFF751EUI.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF635FMI bigWig signal p-value ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF603JXH, ENCFF949WTQ 944553846 ENCODE Processing Pipeline 5601646129f94154ffc6098168e7b57b https://www.encodeproject.org/files/ENCFF635FMI/@@download/ENCFF635FMI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF995ENH bigBed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF222WBN 2408480 ENCODE Processing Pipeline 95c2a51ba1e532cc551a388445d2b279 https://www.encodeproject.org/files/ENCFF995ENH/@@download/ENCFF995ENH.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF054NLQ bigWig signal p-value ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF753ZZM, ENCFF949WTQ 935318655 ENCODE Processing Pipeline e9f8f04785294195d18e3b2d37e97488 https://www.encodeproject.org/files/ENCFF054NLQ/@@download/ENCFF054NLQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF191XDK bigWig signal p-value ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF603JXH, ENCFF753ZZM, ENCFF949WTQ 1259972666 ENCODE Processing Pipeline 80e5d2b316ce1187031f36730eca7324 https://www.encodeproject.org/files/ENCFF191XDK/@@download/ENCFF191XDK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF647JLC bigBed narrowPeak replicated peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF457EOT 1470377 ENCODE Processing Pipeline 2439def6ba53f5fac758dbf111d04577 https://www.encodeproject.org/files/ENCFF647JLC/@@download/ENCFF647JLC.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF624EBM bigWig fold change over control ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF603JXH, ENCFF949WTQ 1064083268 ENCODE Processing Pipeline cb4ea916a6c3e72dc4f3520ac0fa1f00 https://www.encodeproject.org/files/ENCFF624EBM/@@download/ENCFF624EBM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF741GNU bigWig fold change over control ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF753ZZM, ENCFF949WTQ 1092770468 ENCODE Processing Pipeline f72064c95052b5bf5f722d3fdd7b8f7f https://www.encodeproject.org/files/ENCFF741GNU/@@download/ENCFF741GNU.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF224LZO bigWig fold change over control ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF603JXH, ENCFF753ZZM, ENCFF949WTQ 1609488321 ENCODE Processing Pipeline 7fc48fa6df18171b547d555e7a99e44c https://www.encodeproject.org/files/ENCFF224LZO/@@download/ENCFF224LZO.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF457EOT bed narrowPeak replicated peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF222WBN, ENCFF663ZVP, ENCFF943OHB 674669 ENCODE Processing Pipeline beec7da796075221c78d6359e85d92b0 https://www.encodeproject.org/files/ENCFF457EOT/@@download/ENCFF457EOT.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF569OGV bam unfiltered alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF153OPW, ENCFF564ILE 4095040878 ENCODE Processing Pipeline e1b7aa74eca92c6fc81a7f7cd366e001 https://www.encodeproject.org/files/ENCFF569OGV/@@download/ENCFF569OGV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF553RUN bam unfiltered alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF055JSD, ENCFF067AWT, ENCFF789KSH 3889790705 ENCODE Processing Pipeline 7be760da62c908e30eebb4aec7ac0e02 https://www.encodeproject.org/files/ENCFF553RUN/@@download/ENCFF553RUN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF788XZB bam alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF055JSD, ENCFF067AWT, ENCFF789KSH 2747963744 ENCODE Processing Pipeline 488b641bb29ece76ba0e7e4313deade8 https://www.encodeproject.org/files/ENCFF788XZB/@@download/ENCFF788XZB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF801BAX bam alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF153OPW, ENCFF564ILE 2882440850 ENCODE Processing Pipeline 04d8a0331027385f16895733366735c4 https://www.encodeproject.org/files/ENCFF801BAX/@@download/ENCFF801BAX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF670NAG bed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF788XZB 1404885 ENCODE Processing Pipeline 2354df1ba21c87ab62ff481b10f81663 https://www.encodeproject.org/files/ENCFF670NAG/@@download/ENCFF670NAG.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF396PMX bed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079JAD, ENCFF269JKO, ENCFF801BAX 714706 ENCODE Processing Pipeline d8c8f2566f6c93019db25d433d06114e https://www.encodeproject.org/files/ENCFF396PMX/@@download/ENCFF396PMX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF400CMT bigBed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF600UST 3390529 ENCODE Processing Pipeline bbd2d10dc4a8298c4b9623eb6f958ff1 https://www.encodeproject.org/files/ENCFF400CMT/@@download/ENCFF400CMT.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF864IQP bigBed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF670NAG 2889158 ENCODE Processing Pipeline 650cf2ce869706dad8a03a03051db037 https://www.encodeproject.org/files/ENCFF864IQP/@@download/ENCFF864IQP.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF087IWZ bigBed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF396PMX 2022771 ENCODE Processing Pipeline 696f600a06de2436b2faa9f83955117b https://www.encodeproject.org/files/ENCFF087IWZ/@@download/ENCFF087IWZ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF600UST bed narrowPeak peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF788XZB, ENCFF801BAX 1307135 ENCODE Processing Pipeline 119c847a14fae546ac80b47abb254416 https://www.encodeproject.org/files/ENCFF600UST/@@download/ENCFF600UST.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF780UQD bigWig signal p-value ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF788XZB 886137221 ENCODE Processing Pipeline 3e892712729e3b8da979dd5d20b90bef https://www.encodeproject.org/files/ENCFF780UQD/@@download/ENCFF780UQD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF868AOP bigWig signal p-value ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079JAD, ENCFF269JKO, ENCFF801BAX 1098609921 ENCODE Processing Pipeline 6a239ec1cbe406ae3d56445b8041d781 https://www.encodeproject.org/files/ENCFF868AOP/@@download/ENCFF868AOP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF654GUI bigWig signal p-value ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF788XZB, ENCFF801BAX 1757939696 ENCODE Processing Pipeline 51204b0648d3bb8fbc07e7c3a571557a https://www.encodeproject.org/files/ENCFF654GUI/@@download/ENCFF654GUI.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF131TYQ bigWig fold change over control ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF788XZB 959803105 ENCODE Processing Pipeline 89c57034ed5c7f9180ec1ec164767b35 https://www.encodeproject.org/files/ENCFF131TYQ/@@download/ENCFF131TYQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF713DVO bigWig fold change over control ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079JAD, ENCFF269JKO, ENCFF801BAX 1269306290 ENCODE Processing Pipeline 21ec59b269747f1f72cd594eb6e1968f https://www.encodeproject.org/files/ENCFF713DVO/@@download/ENCFF713DVO.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF024LWP bigWig fold change over control ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF788XZB, ENCFF801BAX 1768800131 ENCODE Processing Pipeline ffea8d3c840af301b7b48ba28f80d9cf https://www.encodeproject.org/files/ENCFF024LWP/@@download/ENCFF024LWP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF842CGS bed narrowPeak replicated peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF396PMX, ENCFF600UST, ENCFF670NAG 664611 ENCODE Processing Pipeline 56d8cac35c71a6520353de0a36df795c https://www.encodeproject.org/files/ENCFF842CGS/@@download/ENCFF842CGS.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF622HEO bigBed narrowPeak replicated peaks ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF842CGS 1426716 ENCODE Processing Pipeline 8e51d35558b3a85cf8b212e42300ca7c https://www.encodeproject.org/files/ENCFF622HEO/@@download/ENCFF622HEO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF291JZH fastq reads ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1907269602 Bing Ren, UCSD f087632f78801c82f02560789521dc58 SRA:SRR3651569 https://www.encodeproject.org/files/ENCFF291JZH/@@download/ENCFF291JZH.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF737MPQ fastq reads ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2564764592 Bing Ren, UCSD 60e5e0450dbc061352dd7504f1d41bb0 SRA:SRR3651567 https://www.encodeproject.org/files/ENCFF737MPQ/@@download/ENCFF737MPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF057SUG fastq reads ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1836696837 Bing Ren, UCSD cdd8b6ade46109d6c78d16b88dce8217 SRA:SRR3651568 https://www.encodeproject.org/files/ENCFF057SUG/@@download/ENCFF057SUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF641YIL fastq reads ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2543833854 Bing Ren, UCSD 7e84e564da5e979533f4efe4845d86a9 SRA:SRR3651570 https://www.encodeproject.org/files/ENCFF641YIL/@@download/ENCFF641YIL.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF315ETH bam alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057SUG, ENCFF737MPQ, ENCFF806TVZ 3183261094 ENCODE Processing Pipeline bb11e4a1702272b3954472ab181c3692 https://www.encodeproject.org/files/ENCFF315ETH/@@download/ENCFF315ETH.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF479IHX bam alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF291JZH, ENCFF641YIL, ENCFF806TVZ 3233206503 ENCODE Processing Pipeline 98c3108572ff771c8f4b9c28c6be9f73 https://www.encodeproject.org/files/ENCFF479IHX/@@download/ENCFF479IHX.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF874CTF bed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF309QAZ, ENCFF315ETH 2997694 ENCODE Processing Pipeline 148a9bcb8071730242a53ae4ce681442 https://www.encodeproject.org/files/ENCFF874CTF/@@download/ENCFF874CTF.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF631QJZ bed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF309QAZ, ENCFF479IHX 2717317 ENCODE Processing Pipeline aa02a8f4de06cb64fe263b136b0cfabc https://www.encodeproject.org/files/ENCFF631QJZ/@@download/ENCFF631QJZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF172YXV bigBed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF631QJZ 5987656 ENCODE Processing Pipeline 4d11aad9424195806b19b732eebc4b70 https://www.encodeproject.org/files/ENCFF172YXV/@@download/ENCFF172YXV.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF673BEP bigBed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF874CTF 6588643 ENCODE Processing Pipeline df71a74cc30938ab18efbe3bc46fe12a https://www.encodeproject.org/files/ENCFF673BEP/@@download/ENCFF673BEP.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF516WHT bigBed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF142VFB 5777855 ENCODE Processing Pipeline 9f695b95caf07864388d85f9dc1949f2 https://www.encodeproject.org/files/ENCFF516WHT/@@download/ENCFF516WHT.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF142VFB bed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF315ETH, ENCFF479IHX 2673573 ENCODE Processing Pipeline 62a7dccefbf2a458c5a0203005ff21a3 https://www.encodeproject.org/files/ENCFF142VFB/@@download/ENCFF142VFB.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF766SOF bigWig signal p-value ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF309QAZ, ENCFF315ETH 1048849868 ENCODE Processing Pipeline bed1b00716dd238b71b3698edce78c39 https://www.encodeproject.org/files/ENCFF766SOF/@@download/ENCFF766SOF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF006OYE bigWig signal p-value ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF309QAZ, ENCFF479IHX 1006550579 ENCODE Processing Pipeline 2f256e2001d2be91d3bdbc96bc8f25d4 https://www.encodeproject.org/files/ENCFF006OYE/@@download/ENCFF006OYE.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF693MID bigWig signal p-value ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF315ETH, ENCFF479IHX 1381579921 ENCODE Processing Pipeline 47c118e82b4e28469299f93e7c843076 https://www.encodeproject.org/files/ENCFF693MID/@@download/ENCFF693MID.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF213VMC bigWig fold change over control ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF309QAZ, ENCFF315ETH 1070109670 ENCODE Processing Pipeline ca873b2cae804973632db144ef905827 https://www.encodeproject.org/files/ENCFF213VMC/@@download/ENCFF213VMC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF087UON bigWig fold change over control ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF015ICF, ENCFF309QAZ, ENCFF479IHX 1151081940 ENCODE Processing Pipeline a4b68b908ad9d17cac1a715d1bb94229 https://www.encodeproject.org/files/ENCFF087UON/@@download/ENCFF087UON.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF288IVC bigWig fold change over control ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF309QAZ, ENCFF315ETH, ENCFF479IHX 1650998586 ENCODE Processing Pipeline 9f0e83aec489654cbcc31c1362d5723d https://www.encodeproject.org/files/ENCFF288IVC/@@download/ENCFF288IVC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF821EZQ bed narrowPeak replicated peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF142VFB, ENCFF631QJZ, ENCFF874CTF 2534323 ENCODE Processing Pipeline b85f44bdfddb0429142e6a056327a76c https://www.encodeproject.org/files/ENCFF821EZQ/@@download/ENCFF821EZQ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF619NAK bigBed narrowPeak replicated peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF821EZQ 4593408 ENCODE Processing Pipeline b85481522cd71a8f970902885f8a53ae https://www.encodeproject.org/files/ENCFF619NAK/@@download/ENCFF619NAK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF082XLK bam unfiltered alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF057SUG, ENCFF737MPQ 5203524213 ENCODE Processing Pipeline ca77e8e071f58c3196239506d6685796 https://www.encodeproject.org/files/ENCFF082XLK/@@download/ENCFF082XLK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF452QBT bam alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF291JZH, ENCFF641YIL 3232497654 ENCODE Processing Pipeline dfa7a3d0994d4cfc816617bc78c2bd26 https://www.encodeproject.org/files/ENCFF452QBT/@@download/ENCFF452QBT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF269FHK bam alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF057SUG, ENCFF737MPQ 3182568119 ENCODE Processing Pipeline 78b54d5866d63288f2b2eaa5ff38c7aa https://www.encodeproject.org/files/ENCFF269FHK/@@download/ENCFF269FHK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF103TQJ bam unfiltered alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF291JZH, ENCFF641YIL 5267702512 ENCODE Processing Pipeline bfb9c52c40d40650b942617963c80e3c https://www.encodeproject.org/files/ENCFF103TQJ/@@download/ENCFF103TQJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF098VYA bed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF269FHK, ENCFF452QBT, ENCFF805AXD 2642666 ENCODE Processing Pipeline e7a906ab28b3af88845b8e9ecbc9190d https://www.encodeproject.org/files/ENCFF098VYA/@@download/ENCFF098VYA.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF302DOR bigBed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098VYA 5741702 ENCODE Processing Pipeline 63e2284b98bbf6abd2435ff608ebc3d5 https://www.encodeproject.org/files/ENCFF302DOR/@@download/ENCFF302DOR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF156WCK bed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF269FHK, ENCFF805AXD 2710809 ENCODE Processing Pipeline 167061a5c9d5302670a88381f7fb6bd5 https://www.encodeproject.org/files/ENCFF156WCK/@@download/ENCFF156WCK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF348HSW bed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF452QBT 2329325 ENCODE Processing Pipeline 1fcaaaa4672c6e368e9c6f693537b645 https://www.encodeproject.org/files/ENCFF348HSW/@@download/ENCFF348HSW.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF744YMV bigBed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF156WCK 5967410 ENCODE Processing Pipeline 73e7477ed4fc08eb9fb3dd0e90481a07 https://www.encodeproject.org/files/ENCFF744YMV/@@download/ENCFF744YMV.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF159NAH bigBed narrowPeak peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF348HSW 5129922 ENCODE Processing Pipeline 8aeb29239706092f41fe4a7a31cd2f26 https://www.encodeproject.org/files/ENCFF159NAH/@@download/ENCFF159NAH.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF728UOV bigWig signal p-value ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF269FHK, ENCFF805AXD 858566771 ENCODE Processing Pipeline c56fd11de5ff40b132be27c81024f8bd https://www.encodeproject.org/files/ENCFF728UOV/@@download/ENCFF728UOV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF831ASK bigWig signal p-value ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF452QBT 846183290 ENCODE Processing Pipeline 3af373f1b693cf50ba0a5d09f976f22f https://www.encodeproject.org/files/ENCFF831ASK/@@download/ENCFF831ASK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF740ZPN bigWig signal p-value ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF269FHK, ENCFF452QBT, ENCFF805AXD 1473708050 ENCODE Processing Pipeline 9eda43a4e1ad00341dab8a22547f8a7a https://www.encodeproject.org/files/ENCFF740ZPN/@@download/ENCFF740ZPN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF803CPJ bigWig fold change over control ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098HSW, ENCFF269FHK, ENCFF805AXD 1123811240 ENCODE Processing Pipeline 20eb40b091c024ac7bc5418cbf72233f https://www.encodeproject.org/files/ENCFF803CPJ/@@download/ENCFF803CPJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF051ZWK bigWig fold change over control ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF452QBT 988984154 ENCODE Processing Pipeline fdf7d2d0efe0c8b2998a5e19ea263cdc https://www.encodeproject.org/files/ENCFF051ZWK/@@download/ENCFF051ZWK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF795DAU bigWig fold change over control ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF269FHK, ENCFF452QBT, ENCFF805AXD 1672833963 ENCODE Processing Pipeline e59ac74f9cfef9a1efb157764f013889 https://www.encodeproject.org/files/ENCFF795DAU/@@download/ENCFF795DAU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF842ZMC bed narrowPeak replicated peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098VYA, ENCFF156WCK, ENCFF348HSW 2198003 ENCODE Processing Pipeline ff70809fd0428baedad1d0e77f4a25ed https://www.encodeproject.org/files/ENCFF842ZMC/@@download/ENCFF842ZMC.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF459DUN bigBed narrowPeak replicated peaks ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF842ZMC 3930443 ENCODE Processing Pipeline f9fceaecc15be81f8fdbc298c75a4600 https://www.encodeproject.org/files/ENCFF459DUN/@@download/ENCFF459DUN.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AFD fastq reads ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1260924953 Bing Ren, UCSD 9b0dc9df320cce45d334c1d21da6bec6 SRA:SRR3651731 https://www.encodeproject.org/files/ENCFF002AFD/@@download/ENCFF002AFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQL/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF002AFH fastq reads ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1654456961 Bing Ren, UCSD 5bd756a629d494ee777174b53529d01c SRA:SRR3651732 https://www.encodeproject.org/files/ENCFF002AFH/@@download/ENCFF002AFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQO/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF302HUT bam alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFH, ENCFF806TVZ 1267959957 ENCODE Processing Pipeline bf6e5efe45d76b2a22d0028ac65bb636 https://www.encodeproject.org/files/ENCFF302HUT/@@download/ENCFF302HUT.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF873ZQP bam alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFD, ENCFF806TVZ 805511834 ENCODE Processing Pipeline cece6112554a2ccb135cbc91c8ae00e3 https://www.encodeproject.org/files/ENCFF873ZQP/@@download/ENCFF873ZQP.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF096HIT bed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF302HUT, ENCFF786XLC 966133 ENCODE Processing Pipeline d761c97547839b6b923fdffede10b3c9 https://www.encodeproject.org/files/ENCFF096HIT/@@download/ENCFF096HIT.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF582MZM bed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF786XLC, ENCFF873ZQP 1321207 ENCODE Processing Pipeline 94bd1d7e5c7fc4a4cb967260737e4af8 https://www.encodeproject.org/files/ENCFF582MZM/@@download/ENCFF582MZM.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF899NNS bigBed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF582MZM 3123294 ENCODE Processing Pipeline c596e57d79fdddd6b0f6c0ba1c3aec3d https://www.encodeproject.org/files/ENCFF899NNS/@@download/ENCFF899NNS.bigBed mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF903BLA bed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF302HUT, ENCFF786XLC, ENCFF873ZQP 969887 ENCODE Processing Pipeline a105fcfc516d2638587c529b6b11e2d2 https://www.encodeproject.org/files/ENCFF903BLA/@@download/ENCFF903BLA.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF229TCO bigBed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF096HIT 2416840 ENCODE Processing Pipeline a5cdfd0b46e5d6a6ca99a79bcfba2d2e https://www.encodeproject.org/files/ENCFF229TCO/@@download/ENCFF229TCO.bigBed mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF997RBQ bigBed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF903BLA 2383631 ENCODE Processing Pipeline 21a58721e17273240dd1856e2f78b36f https://www.encodeproject.org/files/ENCFF997RBQ/@@download/ENCFF997RBQ.bigBed mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF540PEX bigWig signal p-value ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF302HUT, ENCFF786XLC 484625222 ENCODE Processing Pipeline bd03a14731ff790587996bff902462db https://www.encodeproject.org/files/ENCFF540PEX/@@download/ENCFF540PEX.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF090QZH bigWig signal p-value ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF786XLC, ENCFF873ZQP 418259660 ENCODE Processing Pipeline 239a0c1b214338e5577cf489abd8636e https://www.encodeproject.org/files/ENCFF090QZH/@@download/ENCFF090QZH.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF755KDV bigWig signal p-value ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF302HUT, ENCFF786XLC, ENCFF873ZQP 629051028 ENCODE Processing Pipeline 139a82d50ae5609a9adcfd85ea03c1ba https://www.encodeproject.org/files/ENCFF755KDV/@@download/ENCFF755KDV.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF740RZQ bigWig fold change over control ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF302HUT, ENCFF786XLC 466453618 ENCODE Processing Pipeline 3a12e959763060db8294c08aa9b243b3 https://www.encodeproject.org/files/ENCFF740RZQ/@@download/ENCFF740RZQ.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF126JFN bigWig fold change over control ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF786XLC, ENCFF873ZQP 397154130 ENCODE Processing Pipeline 0e04772e8bd86d70fc1707942201c80d https://www.encodeproject.org/files/ENCFF126JFN/@@download/ENCFF126JFN.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF937EYI bigBed narrowPeak replicated peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF773NKK 1832387 ENCODE Processing Pipeline 39bb96374de665d75b9ab8d4dc1cfe3f https://www.encodeproject.org/files/ENCFF937EYI/@@download/ENCFF937EYI.bigBed mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF003YZX bigWig fold change over control ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF302HUT, ENCFF786XLC, ENCFF873ZQP 700035675 ENCODE Processing Pipeline fa1c3b04a0d294f9e1c63b9bbd09dc6f https://www.encodeproject.org/files/ENCFF003YZX/@@download/ENCFF003YZX.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF773NKK bed narrowPeak replicated peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF096HIT, ENCFF582MZM, ENCFF903BLA 896026 ENCODE Processing Pipeline c4844c1d607b3df86a14dab5eebdc561 https://www.encodeproject.org/files/ENCFF773NKK/@@download/ENCFF773NKK.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF755NFR bam unfiltered alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFD, ENCFF018NEO 1412404392 ENCODE Processing Pipeline f6e48bc42e815d1a92295605421e7b70 https://www.encodeproject.org/files/ENCFF755NFR/@@download/ENCFF755NFR.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF224EJF bam alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFD, ENCFF018NEO 805349138 ENCODE Processing Pipeline 593009a530cedf19a5f6047d82bbe24f https://www.encodeproject.org/files/ENCFF224EJF/@@download/ENCFF224EJF.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF598ZWU bed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224EJF, ENCFF767URV 1065550 ENCODE Processing Pipeline bb09e8baa5c3e2d55362dafd2e747281 https://www.encodeproject.org/files/ENCFF598ZWU/@@download/ENCFF598ZWU.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF274ZRS bigBed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF598ZWU 2601117 ENCODE Processing Pipeline 885e14d3e0af447f203d2a40354365b2 https://www.encodeproject.org/files/ENCFF274ZRS/@@download/ENCFF274ZRS.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF776HUO bigWig signal p-value ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224EJF, ENCFF767URV 342898947 ENCODE Processing Pipeline ea68845988a840f5a6f4179e3c128b03 https://www.encodeproject.org/files/ENCFF776HUO/@@download/ENCFF776HUO.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF237HZZ bigWig fold change over control ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224EJF, ENCFF767URV 331830281 ENCODE Processing Pipeline f491b65af45475ffe6f1f169eec62bcb https://www.encodeproject.org/files/ENCFF237HZZ/@@download/ENCFF237HZZ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF115VWS bam unfiltered alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFH, ENCFF018NEO 1479025624 ENCODE Processing Pipeline be1d3c1800d38cd0a5ca30ffd3732035 https://www.encodeproject.org/files/ENCFF115VWS/@@download/ENCFF115VWS.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF865YUN bam alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFH, ENCFF018NEO 979174380 ENCODE Processing Pipeline 2e8b0e4203a15f73a0bcd7eaa6692237 https://www.encodeproject.org/files/ENCFF865YUN/@@download/ENCFF865YUN.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF849HLN bed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224EJF, ENCFF424QZD, ENCFF767URV, ENCFF865YUN 986900 ENCODE Processing Pipeline 7f8f55a68ad8a39e5cd49863874f493c https://www.encodeproject.org/files/ENCFF849HLN/@@download/ENCFF849HLN.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF693SVA bigBed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF604XDW 2421306 ENCODE Processing Pipeline 35b6f269629b94bce876ea55f529a7d2 https://www.encodeproject.org/files/ENCFF693SVA/@@download/ENCFF693SVA.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF119DMT bigBed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF849HLN 3033919 ENCODE Processing Pipeline 77472aa9d46270f85ba1135086a7ca7a https://www.encodeproject.org/files/ENCFF119DMT/@@download/ENCFF119DMT.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF604XDW bed narrowPeak peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF767URV, ENCFF865YUN 962492 ENCODE Processing Pipeline bb0551757906d4d99a08972f74014b82 https://www.encodeproject.org/files/ENCFF604XDW/@@download/ENCFF604XDW.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF237OYZ bigWig signal p-value ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF767URV, ENCFF865YUN 474049232 ENCODE Processing Pipeline ef4427865c8261ded4b0924f98737f52 https://www.encodeproject.org/files/ENCFF237OYZ/@@download/ENCFF237OYZ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF883ONS bigWig signal p-value ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224EJF, ENCFF424QZD, ENCFF767URV, ENCFF865YUN 625507656 ENCODE Processing Pipeline 23223173a51af9c7e40c0e87f3b7616d https://www.encodeproject.org/files/ENCFF883ONS/@@download/ENCFF883ONS.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF891EAK bigWig fold change over control ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF767URV, ENCFF865YUN 467338797 ENCODE Processing Pipeline 6b0792e20fd2a7626f89fbe532b1823d https://www.encodeproject.org/files/ENCFF891EAK/@@download/ENCFF891EAK.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF494OOQ bigWig fold change over control ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224EJF, ENCFF424QZD, ENCFF767URV, ENCFF865YUN 704161127 ENCODE Processing Pipeline 0d2587cf01dc7bfb8e504274ccaee469 https://www.encodeproject.org/files/ENCFF494OOQ/@@download/ENCFF494OOQ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF025SAW bigBed narrowPeak replicated peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF573BYB 2253030 ENCODE Processing Pipeline 54f6d7c7fb8fdca79ba42bdfb3574a9d https://www.encodeproject.org/files/ENCFF025SAW/@@download/ENCFF025SAW.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF573BYB bed narrowPeak replicated peaks ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF598ZWU, ENCFF604XDW, ENCFF849HLN 885014 ENCODE Processing Pipeline d5a38326429794d8357d70693c0ecdca https://www.encodeproject.org/files/ENCFF573BYB/@@download/ENCFF573BYB.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF002AQF fastq reads ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1804863970 Bing Ren, UCSD 30203212145a116ba1f74fbc086c59eb SRA:SRR3651620 https://www.encodeproject.org/files/ENCFF002AQF/@@download/ENCFF002AQF.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF002AQG fastq reads ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1891889993 Bing Ren, UCSD 85a575be005fa6ae89c626c5967b347f SRA:SRR3651619 https://www.encodeproject.org/files/ENCFF002AQG/@@download/ENCFF002AQG.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF100ZLH bam unfiltered alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQG, ENCFF806TVZ 2162765185 ENCODE Processing Pipeline 9f24d21f4cf7f3ac3ddae9de7aff8012 https://www.encodeproject.org/files/ENCFF100ZLH/@@download/ENCFF100ZLH.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF321OLM bam unfiltered alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQF, ENCFF806TVZ 2067412909 ENCODE Processing Pipeline 958a6ccc7be95549ecc742b1349c3851 https://www.encodeproject.org/files/ENCFF321OLM/@@download/ENCFF321OLM.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF868CEP bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQF, ENCFF806TVZ 1435482468 ENCODE Processing Pipeline 378f91f25b19b4d27e4659757070a2df https://www.encodeproject.org/files/ENCFF868CEP/@@download/ENCFF868CEP.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF462HQE bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQG, ENCFF806TVZ 1495213347 ENCODE Processing Pipeline 23f7c5ff7170a562b3c63f14c48feced https://www.encodeproject.org/files/ENCFF462HQE/@@download/ENCFF462HQE.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF193PZD bam unfiltered alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQF, ENCFF018NEO 2069484802 ENCODE Processing Pipeline 68c3c94fb97e50d3b59f7a5456b938db https://www.encodeproject.org/files/ENCFF193PZD/@@download/ENCFF193PZD.bam mm10 released insufficient read depth for broad peaks control ENCFF827DYZ bam unfiltered alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQG, ENCFF018NEO 2165073587 ENCODE Processing Pipeline 00c58fc0f594e98706a28c73c5266b10 https://www.encodeproject.org/files/ENCFF827DYZ/@@download/ENCFF827DYZ.bam mm10 released insufficient read depth for broad peaks control ENCFF872AZH bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQF, ENCFF018NEO 1435051788 ENCODE Processing Pipeline 4e5cf336f46b42d56c9fb0ba4eb0d40c https://www.encodeproject.org/files/ENCFF872AZH/@@download/ENCFF872AZH.bam mm10 released insufficient read depth for broad peaks control ENCFF238DWC bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQG, ENCFF018NEO 1494757798 ENCODE Processing Pipeline 3fe3dd97092a1482a2622d707a1bf532 https://www.encodeproject.org/files/ENCFF238DWC/@@download/ENCFF238DWC.bam mm10 released insufficient read depth for broad peaks control ENCFF895JNF bam unfiltered alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQG, ENCFF018NEO 1754646477 ENCODE Processing Pipeline 71560c8368b15ec48c826d412d8072d0 https://www.encodeproject.org/files/ENCFF895JNF/@@download/ENCFF895JNF.bam mm10 released insufficient read depth for broad peaks control ENCFF294LID bam unfiltered alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQF, ENCFF018NEO 1677413702 ENCODE Processing Pipeline 887dc4e043c701b2d21bdfe21bf07666 https://www.encodeproject.org/files/ENCFF294LID/@@download/ENCFF294LID.bam mm10 released insufficient read depth for broad peaks control ENCFF598OHC bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQG, ENCFF018NEO 1130170515 ENCODE Processing Pipeline dce90a9d0d0d552552e7420a5d331041 https://www.encodeproject.org/files/ENCFF598OHC/@@download/ENCFF598OHC.bam mm10 released insufficient read depth for broad peaks control ENCFF383CGK bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQF, ENCFF018NEO 1084466431 ENCODE Processing Pipeline b366ed9f50c590cf98aab51d57c3747d https://www.encodeproject.org/files/ENCFF383CGK/@@download/ENCFF383CGK.bam mm10 released insufficient read depth for broad peaks control ENCFF001LUM bam alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LUU 2595447220 Ross Hardison, PennState 60902a90009694c986c9cbe3ebf11062 https://www.encodeproject.org/files/ENCFF001LUM/@@download/ENCFF001LUM.bam mm9 archived inconsistent platforms insufficient read depth ENCFF001LUN bigBed broadPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YBK 4131897 Ross Hardison, PennState fcddfecf54f4115ca1a7eec7fb1af206 https://www.encodeproject.org/files/ENCFF001LUN/@@download/ENCFF001LUN.bigBed mm9 archived inconsistent platforms insufficient read depth ENCFF001LUO bam alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LUW 4826429630 Ross Hardison, PennState 9f1cf3d410522baf404b90264151cd5a https://www.encodeproject.org/files/ENCFF001LUO/@@download/ENCFF001LUO.bam mm9 archived inconsistent platforms insufficient read depth ENCFF001LUP bigBed broadPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YBL 3526550 Ross Hardison, PennState e5337f499ba122cccc566393e7f11c31 https://www.encodeproject.org/files/ENCFF001LUP/@@download/ENCFF001LUP.bigBed mm9 archived inconsistent platforms insufficient read depth ENCFF001LUQ bigBed broadPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YBM 4337499 Ross Hardison, PennState 3633c7b2e506812d53edf7186030048f https://www.encodeproject.org/files/ENCFF001LUQ/@@download/ENCFF001LUQ.bigBed mm9 archived inconsistent platforms insufficient read depth ENCFF001LUR bigWig signal ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 4545228050 Ross Hardison, PennState b70958b766ea64cdac6ed106fdff28e9 https://www.encodeproject.org/files/ENCFF001LUR/@@download/ENCFF001LUR.bigWig mm9 archived inconsistent platforms missing derived_from insufficient read depth ENCFF001LUT bigWig signal ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5612307462 Ross Hardison, PennState dd93ac7483ea3eab134700317ad7df61 https://www.encodeproject.org/files/ENCFF001LUT/@@download/ENCFF001LUT.bigWig mm9 archived inconsistent platforms missing derived_from insufficient read depth ENCFF001LUU fastq reads ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 2166928129 Ross Hardison, PennState ed8d902e7d8dbc1aa5b47210ea403880 https://www.encodeproject.org/files/ENCFF001LUU/@@download/ENCFF001LUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLS/ released inconsistent platforms, inconsistent control read length insufficient read depth ENCFF001LUV bigWig signal ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 6003644394 Ross Hardison, PennState 143eea6c1012208ab8c7960891e8694c https://www.encodeproject.org/files/ENCFF001LUV/@@download/ENCFF001LUV.bigWig mm9 archived inconsistent platforms missing derived_from insufficient read depth ENCFF001LUW fastq reads ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4458015130 Ross Hardison, PennState 75fd2c3afd73a2b8bcf4b67b845d3f51 https://www.encodeproject.org/files/ENCFF001LUW/@@download/ENCFF001LUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLY/ released inconsistent platforms insufficient read depth ENCFF001YBK bed broadPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1933603 Ross Hardison, PennState 191309278da41e2f8f0ca13b1c064e20 https://www.encodeproject.org/files/ENCFF001YBK/@@download/ENCFF001YBK.bed.gz mm9 archived inconsistent platforms missing derived_from insufficient read depth ENCFF001YBL bed broadPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1460134 Ross Hardison, PennState b45352d1573cb05c3f3af731435bfe1e https://www.encodeproject.org/files/ENCFF001YBL/@@download/ENCFF001YBL.bed.gz mm9 archived inconsistent platforms missing derived_from insufficient read depth ENCFF001YBM bed broadPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1898139 Ross Hardison, PennState 02613b67e5b605236ead0defbd3e651c https://www.encodeproject.org/files/ENCFF001YBM/@@download/ENCFF001YBM.bed.gz mm9 archived inconsistent platforms missing derived_from insufficient read depth ENCFF122QWR bam unfiltered alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LUW, ENCFF018NEO 3893584586 ENCODE Processing Pipeline 1ff8599ee172109ce8091fbdef32b789 https://www.encodeproject.org/files/ENCFF122QWR/@@download/ENCFF122QWR.bam mm10 released inconsistent platforms insufficient read depth ENCFF713PPI bam alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LUU, ENCFF018NEO 1470586118 ENCODE Processing Pipeline 5f3e31f694f9055df675d811ce9fa862 https://www.encodeproject.org/files/ENCFF713PPI/@@download/ENCFF713PPI.bam mm10 released inconsistent platforms insufficient read depth ENCFF893ERQ bam unfiltered alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LUU, ENCFF018NEO 1956433420 ENCODE Processing Pipeline 58b1939098a1bb6b666ca0d3369f0ea4 https://www.encodeproject.org/files/ENCFF893ERQ/@@download/ENCFF893ERQ.bam mm10 released inconsistent platforms insufficient read depth ENCFF426BGM bam alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LUW, ENCFF018NEO 3050058522 ENCODE Processing Pipeline 8d095b381e3f7f71f5108284d3c989e8 https://www.encodeproject.org/files/ENCFF426BGM/@@download/ENCFF426BGM.bam mm10 released inconsistent platforms insufficient read depth ENCFF398UJM bigBed narrowPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF583FWR 10160966 ENCODE Processing Pipeline 69ac83c906173760a4bdc6bfacbff1ac https://www.encodeproject.org/files/ENCFF398UJM/@@download/ENCFF398UJM.bigBed mm10 released inconsistent platforms insufficient read depth ENCFF334THG bigBed narrowPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF687XPM 10245207 ENCODE Processing Pipeline 3aa2d9c0f009e5ec2baf52cd63fb9cc2 https://www.encodeproject.org/files/ENCFF334THG/@@download/ENCFF334THG.bigBed mm10 released inconsistent platforms insufficient read depth ENCFF349YZI bed narrowPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF713PPI, ENCFF867VYO 3859932 ENCODE Processing Pipeline d8064729126de1cca37be9da57bb98b6 https://www.encodeproject.org/files/ENCFF349YZI/@@download/ENCFF349YZI.bed.gz mm10 released inconsistent platforms insufficient read depth ENCFF583FWR bed narrowPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF426BGM, ENCFF867VYO 4070578 ENCODE Processing Pipeline f3da269bc34ad5166cabf0edab5a5a5f https://www.encodeproject.org/files/ENCFF583FWR/@@download/ENCFF583FWR.bed.gz mm10 released inconsistent platforms insufficient read depth ENCFF624KAV bigBed narrowPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF349YZI 9785025 ENCODE Processing Pipeline 317fbf7981014604b57485a4077b28d4 https://www.encodeproject.org/files/ENCFF624KAV/@@download/ENCFF624KAV.bigBed mm10 released inconsistent platforms insufficient read depth ENCFF687XPM bed narrowPeak peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF426BGM, ENCFF713PPI, ENCFF867VYO 4076328 ENCODE Processing Pipeline eb4b5d2827c192bf116df6aeb5f5f453 https://www.encodeproject.org/files/ENCFF687XPM/@@download/ENCFF687XPM.bed.gz mm10 released inconsistent platforms insufficient read depth ENCFF524XTN bigWig signal p-value ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF713PPI, ENCFF867VYO 897387309 ENCODE Processing Pipeline e0b415eeeb2d27b6dc3764ab0e5dd7fa https://www.encodeproject.org/files/ENCFF524XTN/@@download/ENCFF524XTN.bigWig mm10 released inconsistent platforms insufficient read depth ENCFF384FUD bigWig signal p-value ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF426BGM, ENCFF867VYO 1133219703 ENCODE Processing Pipeline ad849cf6badd4d5744f69a5613781bee https://www.encodeproject.org/files/ENCFF384FUD/@@download/ENCFF384FUD.bigWig mm10 released inconsistent platforms insufficient read depth ENCFF183JYG bigWig signal p-value ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF426BGM, ENCFF713PPI, ENCFF867VYO 1588580643 ENCODE Processing Pipeline 4e63ecf5aa8bfc4f20952696bbb3c377 https://www.encodeproject.org/files/ENCFF183JYG/@@download/ENCFF183JYG.bigWig mm10 released inconsistent platforms insufficient read depth ENCFF051LQD bigWig fold change over control ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF713PPI, ENCFF867VYO 872208283 ENCODE Processing Pipeline 9b2605c84b1dde011cea6095f036e146 https://www.encodeproject.org/files/ENCFF051LQD/@@download/ENCFF051LQD.bigWig mm10 released inconsistent platforms insufficient read depth ENCFF656GHF bigWig fold change over control ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF426BGM, ENCFF867VYO 1408020177 ENCODE Processing Pipeline cdc361c46748ac3d0fdda3b3d673f579 https://www.encodeproject.org/files/ENCFF656GHF/@@download/ENCFF656GHF.bigWig mm10 released inconsistent platforms insufficient read depth ENCFF751XSP bigWig fold change over control ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF426BGM, ENCFF713PPI, ENCFF867VYO 1676808906 ENCODE Processing Pipeline 65e5b4f320fcd9e4c4f94ac2ebdc0009 https://www.encodeproject.org/files/ENCFF751XSP/@@download/ENCFF751XSP.bigWig mm10 released inconsistent platforms insufficient read depth ENCFF983MYN bed narrowPeak replicated peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF349YZI, ENCFF583FWR, ENCFF687XPM 4341854 ENCODE Processing Pipeline 455c5c6988b1778d0d99266ea3440556 https://www.encodeproject.org/files/ENCFF983MYN/@@download/ENCFF983MYN.bed.gz mm10 released inconsistent platforms insufficient read depth ENCFF685OFY bigBed narrowPeak replicated peaks ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF983MYN 7971804 ENCODE Processing Pipeline 212b76dbe8363a43895e852b296e1b3a https://www.encodeproject.org/files/ENCFF685OFY/@@download/ENCFF685OFY.bigBed mm10 released inconsistent platforms insufficient read depth ENCFF001NFS bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NFV 490068584 Michael Snyder, Stanford f36552af2f3326a09b63b8b02c391c90 https://www.encodeproject.org/files/ENCFF001NFS/@@download/ENCFF001NFS.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF001NFU bigBed narrowPeak peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YHV 925489 Michael Snyder, Stanford b31ed42d6a1993997da6233415173e1e https://www.encodeproject.org/files/ENCFF001NFU/@@download/ENCFF001NFU.bigBed mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF001NFV fastq reads ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 922302704 Michael Snyder, Stanford 2a124aca27e619a187404707ed92bb80 https://www.encodeproject.org/files/ENCFF001NFV/@@download/ENCFF001NFV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF001NFX fastq reads ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1231369423 Michael Snyder, Stanford 7f3be493716f27ba97d767dfdbaa0e74 https://www.encodeproject.org/files/ENCFF001NFX/@@download/ENCFF001NFX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF001NFZ bigWig signal ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NFS, ENCFF001NGA 367992395 Michael Snyder, Stanford 36bc6d8834eed47cb42f06cc3cfa893f https://www.encodeproject.org/files/ENCFF001NFZ/@@download/ENCFF001NFZ.bigWig mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF001NGA bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NFX 599883459 Michael Snyder, Stanford 43ff0358c85450383cd2938ffa1bb543 https://www.encodeproject.org/files/ENCFF001NGA/@@download/ENCFF001NGA.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF001YHV bed narrowPeak peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NFS, ENCFF001NGA 435791 Michael Snyder, Stanford f77d02c1aab88e3494ca7c27ecd5ac5b https://www.encodeproject.org/files/ENCFF001YHV/@@download/ENCFF001YHV.bed.gz mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF942TRM bam unfiltered alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NFV, ENCFF018NEO 1006078940 ENCODE Processing Pipeline ce00ca89ca1c7de59afbdb339ff19c98 https://www.encodeproject.org/files/ENCFF942TRM/@@download/ENCFF942TRM.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF639IMI bam unfiltered alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NFX, ENCFF018NEO 1330389773 ENCODE Processing Pipeline dfd1ef3728775349356ae31d42b25fbf https://www.encodeproject.org/files/ENCFF639IMI/@@download/ENCFF639IMI.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF852WML bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NFV, ENCFF018NEO 665237378 ENCODE Processing Pipeline dab97deefdab40c36c7016aca145672e https://www.encodeproject.org/files/ENCFF852WML/@@download/ENCFF852WML.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF803ESS bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NFX, ENCFF018NEO 859759657 ENCODE Processing Pipeline 491c7a6e3187808d0f25965e4e99cfc2 https://www.encodeproject.org/files/ENCFF803ESS/@@download/ENCFF803ESS.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF580FCF bigWig signal p-value ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF852WML 232273005 ENCODE Processing Pipeline abb776fef3c61fd8a62b9d186e8b8b69 https://www.encodeproject.org/files/ENCFF580FCF/@@download/ENCFF580FCF.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF811RYH bigWig signal p-value ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF803ESS 215207142 ENCODE Processing Pipeline e6fee6391b49597941ec1f043cde70ea https://www.encodeproject.org/files/ENCFF811RYH/@@download/ENCFF811RYH.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF368SFE bigWig fold change over control ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF852WML 278744779 ENCODE Processing Pipeline 76e87a99bf34ce4171b49a5720c0bce9 https://www.encodeproject.org/files/ENCFF368SFE/@@download/ENCFF368SFE.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF191PQC bigWig signal p-value ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF803ESS, ENCFF852WML 222242221 ENCODE Processing Pipeline f2a45582ea421d85d855dbf4600d868f https://www.encodeproject.org/files/ENCFF191PQC/@@download/ENCFF191PQC.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF739TFD bigWig fold change over control ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF803ESS 340225012 ENCODE Processing Pipeline b3c6b43376d51e284e602d3809e499c7 https://www.encodeproject.org/files/ENCFF739TFD/@@download/ENCFF739TFD.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF982BHY bed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF852WML 5004826 ENCODE Processing Pipeline 36d176606ef6918775132fd90207f372 https://www.encodeproject.org/files/ENCFF982BHY/@@download/ENCFF982BHY.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF210EXT bigWig fold change over control ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF803ESS, ENCFF852WML 528116488 ENCODE Processing Pipeline 3458c114ca094072e9f60dc304d486e2 https://www.encodeproject.org/files/ENCFF210EXT/@@download/ENCFF210EXT.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF015NGN bed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF803ESS, ENCFF852WML 5778208 ENCODE Processing Pipeline 3383160453ed884573861773b12b0a74 https://www.encodeproject.org/files/ENCFF015NGN/@@download/ENCFF015NGN.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF125MUD bed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF803ESS 5101910 ENCODE Processing Pipeline f9976f7c60612e5a93dd2d8fd6275348 https://www.encodeproject.org/files/ENCFF125MUD/@@download/ENCFF125MUD.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF768BYN bigBed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF982BHY 12607889 ENCODE Processing Pipeline 66ce93a6ae8d8c877e19b6744b4e9859 https://www.encodeproject.org/files/ENCFF768BYN/@@download/ENCFF768BYN.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF348FRF bigBed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF125MUD 12769342 ENCODE Processing Pipeline b043cdf7866bd3024e0855821cbdd6ed https://www.encodeproject.org/files/ENCFF348FRF/@@download/ENCFF348FRF.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF057KEC bigBed narrowPeak peaks and background as input for IDR ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF015NGN 12811121 ENCODE Processing Pipeline b7698ba1dc9ff543a26feb458fd559f8 https://www.encodeproject.org/files/ENCFF057KEC/@@download/ENCFF057KEC.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF737UCD bed narrowPeak optimal idr thresholded peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF015NGN, ENCFF125MUD, ENCFF547MET, ENCFF982BHY 245870 ENCODE Processing Pipeline be36fb4686aa2c84539dd2fcc5ba6964 https://www.encodeproject.org/files/ENCFF737UCD/@@download/ENCFF737UCD.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF780VDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF737UCD 508330 ENCODE Processing Pipeline 39b327410f83f3958777437bd07a86ec https://www.encodeproject.org/files/ENCFF780VDR/@@download/ENCFF780VDR.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF001MCE bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MCH 1070049299 Ross Hardison, PennState 97325aa30e7a3a93120e589594806772 https://www.encodeproject.org/files/ENCFF001MCE/@@download/ENCFF001MCE.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCG bigBed broadPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDM 2190445 Ross Hardison, PennState a0fec2e099d932137c67eed8e77019b8 https://www.encodeproject.org/files/ENCFF001MCG/@@download/ENCFF001MCG.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCH fastq reads ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 36 single-ended 854932478 Ross Hardison, PennState c61bdf5834498c6284f34c479d8fecbf https://www.encodeproject.org/files/ENCFF001MCH/@@download/ENCFF001MCH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCI bigBed broadPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDN 2237883 Ross Hardison, PennState a30b7522963e84dc4e20fd4afc6e63f2 https://www.encodeproject.org/files/ENCFF001MCI/@@download/ENCFF001MCI.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCJ bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MCR 6079582207 Ross Hardison, PennState 81f4e8bd400583d431b41f4ce9108508 https://www.encodeproject.org/files/ENCFF001MCJ/@@download/ENCFF001MCJ.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCK bigBed broadPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDO 2205620 Ross Hardison, PennState a3f4dc30473792993b07d1c3adc00767 https://www.encodeproject.org/files/ENCFF001MCK/@@download/ENCFF001MCK.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCL bigWig signal ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 3494411395 Ross Hardison, PennState fc24f55cf1b4ca22d5c63d4b5da42968 https://www.encodeproject.org/files/ENCFF001MCL/@@download/ENCFF001MCL.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MCM bigWig signal ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5961625398 Ross Hardison, PennState b28d081b007f2928b02b7e731b0c2177 https://www.encodeproject.org/files/ENCFF001MCM/@@download/ENCFF001MCM.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MCO bigWig signal ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 6108827306 Ross Hardison, PennState 6a93d2322bdea2b5f74019f9ce59d0e7 https://www.encodeproject.org/files/ENCFF001MCO/@@download/ENCFF001MCO.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MCR fastq reads ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 5496786898 Ross Hardison, PennState bd3d918795a43081c8ed96cd54822fb7 https://www.encodeproject.org/files/ENCFF001MCR/@@download/ENCFF001MCR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSW/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001YDM bed broadPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1347556 Ross Hardison, PennState 29f3599462e37893d0160fc93bc96f8e https://www.encodeproject.org/files/ENCFF001YDM/@@download/ENCFF001YDM.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDN bed broadPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 855589 Ross Hardison, PennState 414e26a47796f6d33fca93e57d0de455 https://www.encodeproject.org/files/ENCFF001YDN/@@download/ENCFF001YDN.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDO bed broadPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1306047 Ross Hardison, PennState d53a1de8ad8067e92d53691d7dc61415 https://www.encodeproject.org/files/ENCFF001YDO/@@download/ENCFF001YDO.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF819SKH bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MCR, ENCFF806TVZ 4770665955 ENCODE Processing Pipeline 208c0224981a1e967d96b63d5f578a90 https://www.encodeproject.org/files/ENCFF819SKH/@@download/ENCFF819SKH.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF450AMR bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MCH, ENCFF806TVZ 754184507 ENCODE Processing Pipeline eae3f60ff32ee4b1575365ce9f61370b https://www.encodeproject.org/files/ENCFF450AMR/@@download/ENCFF450AMR.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF881KIP bam unfiltered alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCH, ENCFF018NEO 1123074661 ENCODE Processing Pipeline 11446d107e36db3e138fcb5c8c10885f https://www.encodeproject.org/files/ENCFF881KIP/@@download/ENCFF881KIP.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF035MWY bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCH, ENCFF018NEO 754058920 ENCODE Processing Pipeline 01da2dbd269032f967c11a5ea44b13a5 https://www.encodeproject.org/files/ENCFF035MWY/@@download/ENCFF035MWY.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF856YVF bam unfiltered alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCR, ENCFF018NEO 4902528308 ENCODE Processing Pipeline 1dbb89e6ad8f243a65ff957536563571 https://www.encodeproject.org/files/ENCFF856YVF/@@download/ENCFF856YVF.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF750EGB bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCR, ENCFF018NEO 3518982306 ENCODE Processing Pipeline 31b7f0e23c56d9677b02f2d07849cdf6 https://www.encodeproject.org/files/ENCFF750EGB/@@download/ENCFF750EGB.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF293DYC bed narrowPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF750EGB 7170459 ENCODE Processing Pipeline cce66508a5eea51e2329106c96bebc7e https://www.encodeproject.org/files/ENCFF293DYC/@@download/ENCFF293DYC.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF594KZB bed narrowPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF035MWY, ENCFF383IWZ, ENCFF676LVI, ENCFF750EGB 7060972 ENCODE Processing Pipeline 91f8a937fdbacd8ff2eef6b3a3e6d34c https://www.encodeproject.org/files/ENCFF594KZB/@@download/ENCFF594KZB.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF169UUG bigBed narrowPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF923YGZ 8751245 ENCODE Processing Pipeline b1215c17fc8e700dfbf7cbdbe3482056 https://www.encodeproject.org/files/ENCFF169UUG/@@download/ENCFF169UUG.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF923YGZ bed narrowPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF035MWY, ENCFF383IWZ, ENCFF676LVI 4384775 ENCODE Processing Pipeline 812769792024e0f638da497c878503ca https://www.encodeproject.org/files/ENCFF923YGZ/@@download/ENCFF923YGZ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF119VGE bigBed narrowPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF293DYC 17023090 ENCODE Processing Pipeline 061e8e581b2a1201dfc5630d9ef33e59 https://www.encodeproject.org/files/ENCFF119VGE/@@download/ENCFF119VGE.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF146LYD bigBed narrowPeak peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF594KZB 16660559 ENCODE Processing Pipeline 2420b0f26abb6116c3929e2e5705416a https://www.encodeproject.org/files/ENCFF146LYD/@@download/ENCFF146LYD.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF053CUN bigWig signal p-value ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF035MWY, ENCFF383IWZ, ENCFF676LVI 964652866 ENCODE Processing Pipeline 77e310d5e32b5f6925f289664a716a99 https://www.encodeproject.org/files/ENCFF053CUN/@@download/ENCFF053CUN.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF016NOQ bigWig signal p-value ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF750EGB 1524317092 ENCODE Processing Pipeline 8fe524c72bef6479c83771d31bf9c055 https://www.encodeproject.org/files/ENCFF016NOQ/@@download/ENCFF016NOQ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF231HFI bigWig signal p-value ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF035MWY, ENCFF383IWZ, ENCFF676LVI, ENCFF750EGB 1404135781 ENCODE Processing Pipeline 754d0650d0c7943dab562c3c3ad67240 https://www.encodeproject.org/files/ENCFF231HFI/@@download/ENCFF231HFI.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF447HII bigWig fold change over control ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF035MWY, ENCFF383IWZ, ENCFF676LVI 625447398 ENCODE Processing Pipeline 3c7661f4b5f25131f9fbd57c6099922b https://www.encodeproject.org/files/ENCFF447HII/@@download/ENCFF447HII.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF438EYC bigWig fold change over control ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF750EGB 1616708899 ENCODE Processing Pipeline 10e8ee329b2d0d835a24c8400169a9b2 https://www.encodeproject.org/files/ENCFF438EYC/@@download/ENCFF438EYC.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF999SUS bigWig fold change over control ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF035MWY, ENCFF383IWZ, ENCFF676LVI, ENCFF750EGB 1739894725 ENCODE Processing Pipeline caed4af5ec851100baa3fd0c7486470c https://www.encodeproject.org/files/ENCFF999SUS/@@download/ENCFF999SUS.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF014IQD bed narrowPeak replicated peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF293DYC, ENCFF594KZB, ENCFF923YGZ 5312253 ENCODE Processing Pipeline f3bbb9b71490ade753903a8b5cd69fbb https://www.encodeproject.org/files/ENCFF014IQD/@@download/ENCFF014IQD.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF930KMW bigBed narrowPeak replicated peaks ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF014IQD 9386684 ENCODE Processing Pipeline 04e295047af9f6500627190da7141525 https://www.encodeproject.org/files/ENCFF930KMW/@@download/ENCFF930KMW.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF773SFT fastq reads ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1321666970 Richard Myers, HAIB 7f1c4cccc441abb963b29c1f69601a0c SRA:SRR5111042 https://www.encodeproject.org/files/ENCFF773SFT/@@download/ENCFF773SFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF691VJX/ released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF414VXY fastq reads ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1275066259 Richard Myers, HAIB 6fea55c06b046aa8b7d2f4319738ef59 SRA:SRR5111041 https://www.encodeproject.org/files/ENCFF414VXY/@@download/ENCFF414VXY.fastq.gz Illumina HiSeq 2000 /files/ENCFF691VJX/ released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF449TKR bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF414VXY, ENCFF806TVZ 829994867 ENCODE Processing Pipeline e91dfe5e1f51be2104a6df2661535609 https://www.encodeproject.org/files/ENCFF449TKR/@@download/ENCFF449TKR.bam mm10-minimal archived antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF671YYY bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF773SFT, ENCFF806TVZ 864704311 ENCODE Processing Pipeline 34a29f314d778a64e2bfd3c8e354488d https://www.encodeproject.org/files/ENCFF671YYY/@@download/ENCFF671YYY.bam mm10-minimal archived antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF836ILC bam unfiltered alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 1248798984 ENCODE Processing Pipeline ab2edf2fc4c85f5d12c81bf817aa6617 https://www.encodeproject.org/files/ENCFF836ILC/@@download/ENCFF836ILC.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF679LLO bam unfiltered alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 1204916507 ENCODE Processing Pipeline 639be99ab90e9d38c9db4eb89aa4cf95 https://www.encodeproject.org/files/ENCFF679LLO/@@download/ENCFF679LLO.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF464ZPC bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 864620000 ENCODE Processing Pipeline a92e2b5ebdcfcb46e7a947c387c931a8 https://www.encodeproject.org/files/ENCFF464ZPC/@@download/ENCFF464ZPC.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF039PBK bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 829916391 ENCODE Processing Pipeline 3f762d3d24129708c0728da1ca245b69 https://www.encodeproject.org/files/ENCFF039PBK/@@download/ENCFF039PBK.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF473UZT bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 377063707 ENCODE Processing Pipeline 098886ce0455791761af0218e63ae567 https://www.encodeproject.org/files/ENCFF473UZT/@@download/ENCFF473UZT.bigWig mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF179SMD bed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 5181326 ENCODE Processing Pipeline 1267c50169ee45fea9d6bf90ac74321f https://www.encodeproject.org/files/ENCFF179SMD/@@download/ENCFF179SMD.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF685PLR bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 317301536 ENCODE Processing Pipeline 8afa2b1ef7a5f56ac4b345888e92dae7 https://www.encodeproject.org/files/ENCFF685PLR/@@download/ENCFF685PLR.bigWig mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF978OVE bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 367319881 ENCODE Processing Pipeline 15c0b09158d7ac86c8fbd37dd5ecd0a0 https://www.encodeproject.org/files/ENCFF978OVE/@@download/ENCFF978OVE.bigWig mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF203JTB bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 255069612 ENCODE Processing Pipeline 04ddbc12d14abcd4d290e2c31a73a16a https://www.encodeproject.org/files/ENCFF203JTB/@@download/ENCFF203JTB.bigWig mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF661SPC bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 436793374 ENCODE Processing Pipeline 26023d7747701b12bd84c1a7c4e784cb https://www.encodeproject.org/files/ENCFF661SPC/@@download/ENCFF661SPC.bigWig mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF132AEN bigBed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF934ACG 10864936 ENCODE Processing Pipeline bdbe49d60873d3fd7a095be105974082 https://www.encodeproject.org/files/ENCFF132AEN/@@download/ENCFF132AEN.bigBed mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF459NLJ bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 264679390 ENCODE Processing Pipeline 845fa59253d82bdd825890a59e7b2ccd https://www.encodeproject.org/files/ENCFF459NLJ/@@download/ENCFF459NLJ.bigWig mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF934ACG bed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 5090017 ENCODE Processing Pipeline c56cde087a2d8ab8d6b5c5ea6d1b55fd https://www.encodeproject.org/files/ENCFF934ACG/@@download/ENCFF934ACG.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF445WGT bed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 5756267 ENCODE Processing Pipeline 0699b810072edc8131e34201f84ebc9a https://www.encodeproject.org/files/ENCFF445WGT/@@download/ENCFF445WGT.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF775IPY bigBed narrowPeak conservative idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF843CQM 2216368 ENCODE Processing Pipeline a902de514270438b53001ffd24ae9a15 https://www.encodeproject.org/files/ENCFF775IPY/@@download/ENCFF775IPY.bigBed mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF110SCV bigBed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF179SMD 10943369 ENCODE Processing Pipeline e0c1a2a5b8ca9f766a3fba5f426e32f7 https://www.encodeproject.org/files/ENCFF110SCV/@@download/ENCFF110SCV.bigBed mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF843CQM bed narrowPeak conservative idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF179SMD, ENCFF445WGT, ENCFF547MET, ENCFF934ACG 1127701 ENCODE Processing Pipeline 2ac9df70795bc04c653ce8c48d73a060 https://www.encodeproject.org/files/ENCFF843CQM/@@download/ENCFF843CQM.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF074DVX bed narrowPeak optimal idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF179SMD, ENCFF445WGT, ENCFF547MET, ENCFF934ACG 1173213 ENCODE Processing Pipeline c94fd16c74a71bbc5845c38311107108 https://www.encodeproject.org/files/ENCFF074DVX/@@download/ENCFF074DVX.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF809UGV bigBed narrowPeak peaks and background as input for IDR ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF445WGT 11164834 ENCODE Processing Pipeline ed7cb2701e3d5febb407751fd77d644f https://www.encodeproject.org/files/ENCFF809UGV/@@download/ENCFF809UGV.bigBed mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF787HQO bigBed narrowPeak optimal idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF074DVX 2278621 ENCODE Processing Pipeline 07b2833df3c0e7778f9adef71c61f6f3 https://www.encodeproject.org/files/ENCFF787HQO/@@download/ENCFF787HQO.bigBed mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF001LPT bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LQA 295786426 Bing Ren, UCSD d76f5fa60ebb498a08baa029817dbac0 https://www.encodeproject.org/files/ENCFF001LPT/@@download/ENCFF001LPT.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001LPU bigBed broadPeak peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAV 312524 Bing Ren, UCSD 019c18e835c6bcec0e827690becee3c0 https://www.encodeproject.org/files/ENCFF001LPU/@@download/ENCFF001LPU.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001LPV bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LQF 529930573 Bing Ren, UCSD 428bc6fb1a27db5eadde3b8638743d46 https://www.encodeproject.org/files/ENCFF001LPV/@@download/ENCFF001LPV.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001LPW bigWig signal ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPT, ENCFF001LPV 70153391 Bing Ren, UCSD 4c85db792305f9b0cb072e609cab962f https://www.encodeproject.org/files/ENCFF001LPW/@@download/ENCFF001LPW.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001LQA fastq reads ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 405519061 Bing Ren, UCSD d0688acd2c24d09d038c54a983224a0e https://www.encodeproject.org/files/ENCFF001LQA/@@download/ENCFF001LQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSH/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001LQF fastq reads ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 834938469 Bing Ren, UCSD 9ee80ebf60ff2ae3f5d4c281027613df https://www.encodeproject.org/files/ENCFF001LQF/@@download/ENCFF001LQF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSJ/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001YAV bed broadPeak peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPT, ENCFF001LPV 195780 Bing Ren, UCSD 9a0b9a172d312a5d7d2c78505d3a886a https://www.encodeproject.org/files/ENCFF001YAV/@@download/ENCFF001YAV.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF545CBR bam unfiltered alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQF, ENCFF018NEO 865568985 ENCODE Processing Pipeline bf8a4847a3fbcb35432ab7a181aec49b https://www.encodeproject.org/files/ENCFF545CBR/@@download/ENCFF545CBR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF074QUD bam unfiltered alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQA, ENCFF018NEO 453153800 ENCODE Processing Pipeline 5ec9bed92cbd25632668d09835ddb26d https://www.encodeproject.org/files/ENCFF074QUD/@@download/ENCFF074QUD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF526KRJ bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQF, ENCFF018NEO 388115545 ENCODE Processing Pipeline dc970721525d375b902d870408467535 https://www.encodeproject.org/files/ENCFF526KRJ/@@download/ENCFF526KRJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF097KLO bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQA, ENCFF018NEO 266750728 ENCODE Processing Pipeline 9048ed5dc8b9bb401c775fe63e5a88ef https://www.encodeproject.org/files/ENCFF097KLO/@@download/ENCFF097KLO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF210CNY bigWig fold change over control ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 237357684 ENCODE Processing Pipeline c141c4180ea36dcf43b215f7ceff4c26 https://www.encodeproject.org/files/ENCFF210CNY/@@download/ENCFF210CNY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF458VDY bed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF097KLO, ENCFF371CWA, ENCFF543ZOX 4299394 ENCODE Processing Pipeline 7d897044fa277b33621f14e098e22398 https://www.encodeproject.org/files/ENCFF458VDY/@@download/ENCFF458VDY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF272CKS bed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 5326604 ENCODE Processing Pipeline 44f2d9ac83e2a7360ee082b88c168104 https://www.encodeproject.org/files/ENCFF272CKS/@@download/ENCFF272CKS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF460VQY bigBed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF272CKS 12952601 ENCODE Processing Pipeline 227b9c211c8b169e24d0c62b40caab93 https://www.encodeproject.org/files/ENCFF460VQY/@@download/ENCFF460VQY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF177HVQ bed narrowPeak conservative idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF272CKS, ENCFF458VDY, ENCFF547MET, ENCFF855XCG 234554 ENCODE Processing Pipeline a5606835ba0a6392ac0e258188611e01 https://www.encodeproject.org/files/ENCFF177HVQ/@@download/ENCFF177HVQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF138KVE bigBed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF458VDY 10302204 ENCODE Processing Pipeline 8b5685b8592895a66b22657a0d8f2b09 https://www.encodeproject.org/files/ENCFF138KVE/@@download/ENCFF138KVE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF212ELZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF855XCG 13011064 ENCODE Processing Pipeline 7ad006edaf8c5998a43a8c83124c5b93 https://www.encodeproject.org/files/ENCFF212ELZ/@@download/ENCFF212ELZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF293KDO bigWig signal p-value ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF097KLO, ENCFF371CWA, ENCFF543ZOX 291113407 ENCODE Processing Pipeline f08ff306da22327f89cd97c60f8cd310 https://www.encodeproject.org/files/ENCFF293KDO/@@download/ENCFF293KDO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF800TFH bigWig fold change over control ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF097KLO, ENCFF371CWA, ENCFF543ZOX 201592370 ENCODE Processing Pipeline 9b30cae008efd44f04e8e12eede80793 https://www.encodeproject.org/files/ENCFF800TFH/@@download/ENCFF800TFH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF186SBE bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF177HVQ 557475 ENCODE Processing Pipeline a6857bae80a782583e02e1fe9dcaaed5 https://www.encodeproject.org/files/ENCFF186SBE/@@download/ENCFF186SBE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF252SAA bed narrowPeak optimal idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF272CKS, ENCFF458VDY, ENCFF547MET, ENCFF855XCG 246128 ENCODE Processing Pipeline 9e9373f5a7492124121909579ccab211 https://www.encodeproject.org/files/ENCFF252SAA/@@download/ENCFF252SAA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF774WRI bigWig signal p-value ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 343913464 ENCODE Processing Pipeline d064751448c9f7fe3cded0959970b431 https://www.encodeproject.org/files/ENCFF774WRI/@@download/ENCFF774WRI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF929ZOO bigWig signal p-value ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF097KLO, ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 412602899 ENCODE Processing Pipeline e2a3d9bd16402192b3a976099b20c0c6 https://www.encodeproject.org/files/ENCFF929ZOO/@@download/ENCFF929ZOO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF855XCG bed narrowPeak peaks and background as input for IDR ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF097KLO, ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 6283908 ENCODE Processing Pipeline 37115ea5ecdac6592b9cdc7abbb7d81f https://www.encodeproject.org/files/ENCFF855XCG/@@download/ENCFF855XCG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF193PLE bigWig fold change over control ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF097KLO, ENCFF371CWA, ENCFF526KRJ, ENCFF543ZOX 372096660 ENCODE Processing Pipeline bf45828ee43b2935169e78ee9203d312 https://www.encodeproject.org/files/ENCFF193PLE/@@download/ENCFF193PLE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF548OFL bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF252SAA 578353 ENCODE Processing Pipeline f1ba76771a9951d71330bbdba3424573 https://www.encodeproject.org/files/ENCFF548OFL/@@download/ENCFF548OFL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF456UKE fastq reads ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2358616573 Bing Ren, UCSD 544b0d9cde5074fe132fce99b7cd617a SRA:SRR3652246 https://www.encodeproject.org/files/ENCFF456UKE/@@download/ENCFF456UKE.fastq.gz Illumina HiSeq 2000 /files/ENCFF545UQA/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF920HBG fastq reads ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2518020873 Bing Ren, UCSD 6501da37bb5919efb4485f8eed317279 SRA:SRR3652247 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mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF187VOG bam unfiltered alignments ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF920HBG 2678227320 ENCODE Processing Pipeline 3c787181e24899b91a7461bf8bd63f00 https://www.encodeproject.org/files/ENCFF187VOG/@@download/ENCFF187VOG.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF981AGR bam unfiltered alignments ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF456UKE 2547267225 ENCODE Processing Pipeline c8ec41955005d52fa12a3e059260136f https://www.encodeproject.org/files/ENCFF981AGR/@@download/ENCFF981AGR.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF077YAW bam alignments ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF920HBG 1620643834 ENCODE Processing Pipeline fcd939a45da18bcef41f3451bce9f715 https://www.encodeproject.org/files/ENCFF077YAW/@@download/ENCFF077YAW.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF658CWV bam alignments ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF456UKE 1609940452 ENCODE Processing Pipeline 00671d84dbcb44c4216a1e080209cd80 https://www.encodeproject.org/files/ENCFF658CWV/@@download/ENCFF658CWV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF867OEM bed narrowPeak peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF658CWV, ENCFF884PDZ 671988 ENCODE Processing Pipeline 0f099d3a226caf0e4abe70894759995d https://www.encodeproject.org/files/ENCFF867OEM/@@download/ENCFF867OEM.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF988EFR bed narrowPeak peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF077YAW 677374 ENCODE Processing Pipeline d470c9e724d48933329ed39284a835ac https://www.encodeproject.org/files/ENCFF988EFR/@@download/ENCFF988EFR.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF149MII bed narrowPeak peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF077YAW, ENCFF658CWV, ENCFF884PDZ 758775 ENCODE Processing Pipeline d312ce7f47058f9cadbaef1657a21a7c https://www.encodeproject.org/files/ENCFF149MII/@@download/ENCFF149MII.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF683ZPY bigBed narrowPeak peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF867OEM 2132818 ENCODE Processing Pipeline 2dff3d1dba98c0199a2c0644f76afec5 https://www.encodeproject.org/files/ENCFF683ZPY/@@download/ENCFF683ZPY.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF404KOF bigBed narrowPeak peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF988EFR 2163604 ENCODE Processing Pipeline 31d950c9ff3a6f8259aed93f73c548e5 https://www.encodeproject.org/files/ENCFF404KOF/@@download/ENCFF404KOF.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF869XJA bigBed narrowPeak peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF149MII 2290788 ENCODE Processing Pipeline 3324dffd27474b928e96c891eb6fb45f https://www.encodeproject.org/files/ENCFF869XJA/@@download/ENCFF869XJA.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF469PWZ bigWig signal p-value ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF658CWV, ENCFF884PDZ 624240271 ENCODE Processing Pipeline 446181cc87561d9cc937121765116c82 https://www.encodeproject.org/files/ENCFF469PWZ/@@download/ENCFF469PWZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF376UDI bigWig signal p-value ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF077YAW 483928087 ENCODE Processing Pipeline cfd9f1126665aed65467a25731140bae https://www.encodeproject.org/files/ENCFF376UDI/@@download/ENCFF376UDI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF261OKA bigWig signal p-value ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF077YAW, ENCFF658CWV, ENCFF884PDZ 762137161 ENCODE Processing Pipeline d2212beccfde8f95cefeadfa2009cf04 https://www.encodeproject.org/files/ENCFF261OKA/@@download/ENCFF261OKA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF371FVH bigWig fold change over control ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF658CWV, ENCFF884PDZ 546374705 ENCODE Processing Pipeline 1bbc45038f941ead5dd5b4aa09d36a3b https://www.encodeproject.org/files/ENCFF371FVH/@@download/ENCFF371FVH.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF180ZQZ bigWig fold change over control ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF077YAW 523429836 ENCODE Processing Pipeline f881e530ccee880d4fabc6aa6041034f https://www.encodeproject.org/files/ENCFF180ZQZ/@@download/ENCFF180ZQZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF054NVM bigWig fold change over control ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF077YAW, ENCFF658CWV, ENCFF884PDZ 961484889 ENCODE Processing Pipeline 7086260926e641887b9d45a8a0f2b2d7 https://www.encodeproject.org/files/ENCFF054NVM/@@download/ENCFF054NVM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF740QCT bed narrowPeak replicated peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF149MII, ENCFF867OEM, ENCFF988EFR 855002 ENCODE Processing Pipeline 3623941a2144a36a390cd13274474ca3 https://www.encodeproject.org/files/ENCFF740QCT/@@download/ENCFF740QCT.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF624BET bigBed narrowPeak replicated peaks ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF740QCT 1945591 ENCODE Processing Pipeline 970a29f050baf3ebb245a1ae182e1964 https://www.encodeproject.org/files/ENCFF624BET/@@download/ENCFF624BET.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF002AKK fastq reads ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1526368584 Bing Ren, UCSD 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32d983308021b21a6cb8587eb6c8c40d https://www.encodeproject.org/files/ENCFF373AMM/@@download/ENCFF373AMM.bam mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF648CZO bam alignments ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKK, ENCFF806TVZ 1502444467 ENCODE Processing Pipeline 04c889ecd84cc229143658e0b86d2443 https://www.encodeproject.org/files/ENCFF648CZO/@@download/ENCFF648CZO.bam mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF910NZP bed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF373AMM, ENCFF648CZO, ENCFF946XCS 694304 ENCODE Processing Pipeline 626d2bdc657e1b6d55bc401354e8893d https://www.encodeproject.org/files/ENCFF910NZP/@@download/ENCFF910NZP.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF592XSK bigBed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF910NZP 1369385 ENCODE Processing Pipeline fb5c67b37a87bdc71b6e8c6fa1fa7c25 https://www.encodeproject.org/files/ENCFF592XSK/@@download/ENCFF592XSK.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF024YMP bed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF373AMM, ENCFF946XCS 1533305 ENCODE Processing Pipeline 812be2027b3c6c7ad3abe96a389f88a8 https://www.encodeproject.org/files/ENCFF024YMP/@@download/ENCFF024YMP.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF409ZCJ bigBed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF038EKV 2620956 ENCODE Processing Pipeline f9eae7a60071b236290d844de25ffc64 https://www.encodeproject.org/files/ENCFF409ZCJ/@@download/ENCFF409ZCJ.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF038EKV bed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF648CZO, ENCFF946XCS 1462680 ENCODE Processing Pipeline 619552b84237cd429c0377b2ad4181c1 https://www.encodeproject.org/files/ENCFF038EKV/@@download/ENCFF038EKV.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF893QUH bigBed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF024YMP 2706003 ENCODE Processing Pipeline c4ff52c1684219cbaf5e0894f21c294e https://www.encodeproject.org/files/ENCFF893QUH/@@download/ENCFF893QUH.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF421PQE bigWig signal p-value ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF648CZO, ENCFF946XCS 502940836 ENCODE Processing Pipeline 0a69aeb27a9c6ef622b1e19afc45f3a7 https://www.encodeproject.org/files/ENCFF421PQE/@@download/ENCFF421PQE.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF933DAQ bigWig signal p-value ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF373AMM, ENCFF946XCS 589731746 ENCODE Processing Pipeline 902c4944326af493be495cdae5b2f6a4 https://www.encodeproject.org/files/ENCFF933DAQ/@@download/ENCFF933DAQ.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF955KIG bigWig signal p-value ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF373AMM, ENCFF648CZO, ENCFF946XCS 592893284 ENCODE Processing Pipeline 7d78ddfe21da628c85f7c452ebf3b6c8 https://www.encodeproject.org/files/ENCFF955KIG/@@download/ENCFF955KIG.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF707YRN bigWig fold change over control ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF648CZO, ENCFF946XCS 520956881 ENCODE Processing Pipeline 774f2ee87ac5c84ae231148f20300e83 https://www.encodeproject.org/files/ENCFF707YRN/@@download/ENCFF707YRN.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF910YZB bigWig fold change over control ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF373AMM, ENCFF946XCS 533823630 ENCODE Processing Pipeline 5f6c429dca8a4df358d59b9b3c52e0ac https://www.encodeproject.org/files/ENCFF910YZB/@@download/ENCFF910YZB.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF145WKK bigWig fold change over control ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF373AMM, ENCFF648CZO, ENCFF946XCS 867937064 ENCODE Processing Pipeline ea9e9c13f8577727a00c418fac2afc3a https://www.encodeproject.org/files/ENCFF145WKK/@@download/ENCFF145WKK.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF188RUB bed narrowPeak replicated peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF024YMP, ENCFF038EKV, ENCFF910NZP 562190 ENCODE Processing Pipeline 504550a19a5564778c7bd9ea6d8a8ffa https://www.encodeproject.org/files/ENCFF188RUB/@@download/ENCFF188RUB.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF949HMM bigBed narrowPeak replicated peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF188RUB 1080951 ENCODE Processing Pipeline 430a73a7abfb3639b8c0828ae8f29368 https://www.encodeproject.org/files/ENCFF949HMM/@@download/ENCFF949HMM.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF872FLI bam unfiltered alignments ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKM, ENCFF018NEO 1712745052 ENCODE Processing Pipeline 2be2ddbbd02e4178763ad34f790b9f41 https://www.encodeproject.org/files/ENCFF872FLI/@@download/ENCFF872FLI.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF952ZFH bam unfiltered alignments ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKK, ENCFF018NEO 1593275707 ENCODE Processing Pipeline 023f202e60950c99c8037ed24ec76291 https://www.encodeproject.org/files/ENCFF952ZFH/@@download/ENCFF952ZFH.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF126TMF bam alignments ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKM, ENCFF018NEO 1234925859 ENCODE Processing Pipeline 98c15586e89456c4e9aa5030b1e823eb https://www.encodeproject.org/files/ENCFF126TMF/@@download/ENCFF126TMF.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF156ENX bam alignments ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKK, ENCFF018NEO 1162135181 ENCODE Processing Pipeline 6c8d0c86c239793d8ec08ca5de3dfb69 https://www.encodeproject.org/files/ENCFF156ENX/@@download/ENCFF156ENX.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF847OUZ bed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ENX, ENCFF292SSW, ENCFF482UTL 1464228 ENCODE Processing Pipeline 1b07caad4e8e825dcf66ff715c87df9d https://www.encodeproject.org/files/ENCFF847OUZ/@@download/ENCFF847OUZ.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF902CEV bed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126TMF, ENCFF482UTL 190294 ENCODE Processing Pipeline ef08c0e8a17ccf8642e13a0aad222a22 https://www.encodeproject.org/files/ENCFF902CEV/@@download/ENCFF902CEV.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF993QNZ bed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126TMF, ENCFF156ENX, ENCFF292SSW, ENCFF482UTL 688931 ENCODE Processing Pipeline 5acbc5e7478f5c7e3cfaac60ee2523a5 https://www.encodeproject.org/files/ENCFF993QNZ/@@download/ENCFF993QNZ.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF335NVT bigBed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF847OUZ 2610757 ENCODE Processing Pipeline 580f233549387eeb426be489f93f6fc7 https://www.encodeproject.org/files/ENCFF335NVT/@@download/ENCFF335NVT.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF782JNJ bigBed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF902CEV 412283 ENCODE Processing Pipeline 0eb29180d121236f3ffa16c2f85dd537 https://www.encodeproject.org/files/ENCFF782JNJ/@@download/ENCFF782JNJ.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF146TIA bigBed narrowPeak peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF993QNZ 1362777 ENCODE Processing Pipeline 45d8fc8fc7a259ec480bd6fbc38320c6 https://www.encodeproject.org/files/ENCFF146TIA/@@download/ENCFF146TIA.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF820HTP bigWig signal p-value ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ENX, ENCFF292SSW, ENCFF482UTL 457509215 ENCODE Processing Pipeline 2f7a2069c9ecdcb12b50ff2be26b944d https://www.encodeproject.org/files/ENCFF820HTP/@@download/ENCFF820HTP.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF926GES bigWig signal p-value ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126TMF, ENCFF482UTL 308775762 ENCODE Processing Pipeline 125668213f22fe6a4d482c9ce78f7d3a https://www.encodeproject.org/files/ENCFF926GES/@@download/ENCFF926GES.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF615TYG bigWig signal p-value ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126TMF, ENCFF156ENX, ENCFF292SSW, ENCFF482UTL 614224268 ENCODE Processing Pipeline 73c62b4e85d74a28616ed1a58880bbf8 https://www.encodeproject.org/files/ENCFF615TYG/@@download/ENCFF615TYG.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF897FMM bigWig fold change over control ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ENX, ENCFF292SSW, ENCFF482UTL 517948723 ENCODE Processing Pipeline 5ec33283b80ed45a338a974e7039a14e https://www.encodeproject.org/files/ENCFF897FMM/@@download/ENCFF897FMM.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF796PVJ bigWig fold change over control ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126TMF, ENCFF482UTL 439135331 ENCODE Processing Pipeline b8bea5c94859b31f79897fac1d4e2f51 https://www.encodeproject.org/files/ENCFF796PVJ/@@download/ENCFF796PVJ.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF629BDF bigWig fold change over control ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126TMF, ENCFF156ENX, ENCFF292SSW, ENCFF482UTL 855401696 ENCODE Processing Pipeline e38a1181f14122921a8c141b4d54e99d https://www.encodeproject.org/files/ENCFF629BDF/@@download/ENCFF629BDF.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF985EYF bed narrowPeak replicated peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF847OUZ, ENCFF902CEV, ENCFF993QNZ 438372 ENCODE Processing Pipeline 84aa79e9002af2526a2d8d9502bd0f12 https://www.encodeproject.org/files/ENCFF985EYF/@@download/ENCFF985EYF.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF339NSL bigBed narrowPeak replicated peaks ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF985EYF 878704 ENCODE Processing Pipeline 4508adaa624e3abfe4b12e27b76aeb0c https://www.encodeproject.org/files/ENCFF339NSL/@@download/ENCFF339NSL.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF002EUG fastq reads ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1153349618 Bing Ren, UCSD bf5ecb92082a832d3db6fe0501158bd2 SRA:SRR3653035 https://www.encodeproject.org/files/ENCFF002EUG/@@download/ENCFF002EUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXZ/ released low read length, low read depth ENCFF002EUH fastq reads ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1064693574 Bing Ren, UCSD 33e084d9c5219e1ee99860b499169952 SRA:SRR3653034 https://www.encodeproject.org/files/ENCFF002EUH/@@download/ENCFF002EUH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXX/ released low read length, low read depth ENCFF731WNY bam alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUG, ENCFF806TVZ 971620321 ENCODE Processing Pipeline 2c941a92047db1dc6ba08ad540a883ed https://www.encodeproject.org/files/ENCFF731WNY/@@download/ENCFF731WNY.bam mm10-minimal archived low read length, low read depth ENCFF308WGD bam alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUH, ENCFF806TVZ 896273987 ENCODE Processing Pipeline bba0bccfe0974b55ef13ff591116f5fc https://www.encodeproject.org/files/ENCFF308WGD/@@download/ENCFF308WGD.bam mm10-minimal archived low read length, low read depth ENCFF551NYB bigBed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF317EAA 2161676 ENCODE Processing Pipeline 084dfbb293d2f9de405ec60bb5b2b861 https://www.encodeproject.org/files/ENCFF551NYB/@@download/ENCFF551NYB.bigBed mm10-minimal archived low read length, low read depth ENCFF317EAA bed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF308WGD, ENCFF527LXR 744275 ENCODE Processing Pipeline 1da395a7e3ea48f1d8c0b6f740c89459 https://www.encodeproject.org/files/ENCFF317EAA/@@download/ENCFF317EAA.bed.gz mm10-minimal archived low read length, low read depth ENCFF248LFC bed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF308WGD, ENCFF527LXR, ENCFF731WNY 676575 ENCODE Processing Pipeline c0c114a4a80392ce109d941dcf3398a8 https://www.encodeproject.org/files/ENCFF248LFC/@@download/ENCFF248LFC.bed.gz mm10-minimal archived low read length, low read depth ENCFF384LXD bigWig signal p-value ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF308WGD, ENCFF527LXR 365537743 ENCODE Processing Pipeline 17cc615dea5e5462222d9e0ecf4cc778 https://www.encodeproject.org/files/ENCFF384LXD/@@download/ENCFF384LXD.bigWig mm10-minimal archived low read length, low read depth ENCFF876AEX bed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF731WNY 931072 ENCODE Processing Pipeline c68cb87967e383c9ed2954fdf91b65e8 https://www.encodeproject.org/files/ENCFF876AEX/@@download/ENCFF876AEX.bed.gz mm10-minimal archived low read length, low read depth ENCFF973UEZ bigBed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF876AEX 2673755 ENCODE Processing Pipeline d918d1e52036fac4af6decd982f0f117 https://www.encodeproject.org/files/ENCFF973UEZ/@@download/ENCFF973UEZ.bigBed mm10-minimal archived low read length, low read depth ENCFF360ZAG bigBed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF248LFC 1917304 ENCODE Processing Pipeline e46f8afedf76934e9bfca4ae5032ffa5 https://www.encodeproject.org/files/ENCFF360ZAG/@@download/ENCFF360ZAG.bigBed mm10-minimal archived low read length, low read depth ENCFF218VFT bigWig signal p-value ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF731WNY 423155293 ENCODE Processing Pipeline 3d5f0720aca4a764d1b4e85215df2632 https://www.encodeproject.org/files/ENCFF218VFT/@@download/ENCFF218VFT.bigWig mm10-minimal archived low read length, low read depth ENCFF185YNQ bigWig signal p-value ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF308WGD, ENCFF527LXR, ENCFF731WNY 502304344 ENCODE Processing Pipeline 65c49bb8b6c3da95f2365f4063fe2b03 https://www.encodeproject.org/files/ENCFF185YNQ/@@download/ENCFF185YNQ.bigWig mm10-minimal archived low read length, low read depth ENCFF189LKE bigWig fold change over control ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF308WGD, ENCFF527LXR 403608565 ENCODE Processing Pipeline f3e090f575d9e4f8f2a622ea354c02c1 https://www.encodeproject.org/files/ENCFF189LKE/@@download/ENCFF189LKE.bigWig mm10-minimal archived low read length, low read depth ENCFF670BCX bigBed narrowPeak replicated peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF389GAP 1732157 ENCODE Processing Pipeline 1c6fbaa6cd27bb2ee778f3b791a85214 https://www.encodeproject.org/files/ENCFF670BCX/@@download/ENCFF670BCX.bigBed mm10-minimal archived low read length, low read depth ENCFF954URX bigWig fold change over control ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF731WNY 422818467 ENCODE Processing Pipeline 16ad23a6f686bc2e9cde59222b32148b https://www.encodeproject.org/files/ENCFF954URX/@@download/ENCFF954URX.bigWig mm10-minimal archived low read length, low read depth ENCFF622AHR bigWig fold change over control ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF308WGD, ENCFF527LXR, ENCFF731WNY 653758884 ENCODE Processing Pipeline 98447feeb62fedb6da8fb321de148f1d https://www.encodeproject.org/files/ENCFF622AHR/@@download/ENCFF622AHR.bigWig mm10-minimal archived low read length, low read depth ENCFF389GAP bed narrowPeak replicated peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF248LFC, ENCFF317EAA, ENCFF876AEX 802838 ENCODE Processing Pipeline 0a340e9b8f352f20d34ee7aa80b2d6b7 https://www.encodeproject.org/files/ENCFF389GAP/@@download/ENCFF389GAP.bed.gz mm10-minimal archived low read length, low read depth ENCFF500HAR bam unfiltered alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUG, ENCFF018NEO 1459769654 ENCODE Processing Pipeline efc7916744817bf39b6b06f6af14264a https://www.encodeproject.org/files/ENCFF500HAR/@@download/ENCFF500HAR.bam mm10 released low read length, low read depth ENCFF904JCK bam alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUG, ENCFF018NEO 971424729 ENCODE Processing Pipeline d74ce88a47664e7c4fdce346d59e345a https://www.encodeproject.org/files/ENCFF904JCK/@@download/ENCFF904JCK.bam mm10 released low read length, low read depth ENCFF737PDL bam unfiltered alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUH, ENCFF018NEO 1357325716 ENCODE Processing Pipeline ea74feb210d0bb85f22f8eb85dbbbb16 https://www.encodeproject.org/files/ENCFF737PDL/@@download/ENCFF737PDL.bam mm10 released low read length, low read depth ENCFF574YSD bam alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUH, ENCFF018NEO 896064401 ENCODE Processing Pipeline 535cf5aa0307274642e333149b44f4aa https://www.encodeproject.org/files/ENCFF574YSD/@@download/ENCFF574YSD.bam mm10 released low read length, low read depth ENCFF686NCH bed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF574YSD 744709 ENCODE Processing Pipeline 2e5aa6cc93153a6b2726580f6f0093ab https://www.encodeproject.org/files/ENCFF686NCH/@@download/ENCFF686NCH.bed.gz mm10 released low read length, low read depth ENCFF073PFG bed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF904JCK 926012 ENCODE Processing Pipeline e8903ce7056725e6481fa9de84e72a15 https://www.encodeproject.org/files/ENCFF073PFG/@@download/ENCFF073PFG.bed.gz mm10 released low read length, low read depth ENCFF192JKH bed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF574YSD, ENCFF904JCK 677475 ENCODE Processing Pipeline 084b9e817a22f3aa001898310810c8db https://www.encodeproject.org/files/ENCFF192JKH/@@download/ENCFF192JKH.bed.gz mm10 released low read length, low read depth ENCFF452GFS bigBed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF686NCH 2162488 ENCODE Processing Pipeline 66db664dd9b7e1ff8438b912e03d1190 https://www.encodeproject.org/files/ENCFF452GFS/@@download/ENCFF452GFS.bigBed mm10 released low read length, low read depth ENCFF667XVR bigBed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF073PFG 2662174 ENCODE Processing Pipeline fefa3b4d476924041b7ab918206a4b1e https://www.encodeproject.org/files/ENCFF667XVR/@@download/ENCFF667XVR.bigBed mm10 released low read length, low read depth ENCFF552XWP bigBed narrowPeak peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF192JKH 1917963 ENCODE Processing Pipeline 90d4623e9d65141a8e03efb8dbb8d315 https://www.encodeproject.org/files/ENCFF552XWP/@@download/ENCFF552XWP.bigBed mm10 released low read length, low read depth ENCFF032ZNX bigWig signal p-value ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF574YSD 460667088 ENCODE Processing Pipeline f7188c072b8abf4720035bb6f8c98da0 https://www.encodeproject.org/files/ENCFF032ZNX/@@download/ENCFF032ZNX.bigWig mm10 released low read length, low read depth ENCFF434QMZ bigWig signal p-value ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF904JCK 398206254 ENCODE Processing Pipeline c0d0988359ee302630e3548c5b16fb33 https://www.encodeproject.org/files/ENCFF434QMZ/@@download/ENCFF434QMZ.bigWig mm10 released low read length, low read depth ENCFF853RKC bigWig signal p-value ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF574YSD, ENCFF904JCK 500570502 ENCODE Processing Pipeline 5b4eec07e30d9ead4221269d32fd0911 https://www.encodeproject.org/files/ENCFF853RKC/@@download/ENCFF853RKC.bigWig mm10 released low read length, low read depth ENCFF016HSY bigWig fold change over control ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF574YSD 401138300 ENCODE Processing Pipeline 8859807aa821c02c5a70e43f9c24a863 https://www.encodeproject.org/files/ENCFF016HSY/@@download/ENCFF016HSY.bigWig mm10 released low read length, low read depth ENCFF290ICH bigWig fold change over control ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF904JCK 426770612 ENCODE Processing Pipeline 9a0a89b552fcc5c979d29ed08b355234 https://www.encodeproject.org/files/ENCFF290ICH/@@download/ENCFF290ICH.bigWig mm10 released low read length, low read depth ENCFF164OJX bigWig fold change over control ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF574YSD, ENCFF904JCK 642732450 ENCODE Processing Pipeline 31f5e85faa945e6bfc7424322515f916 https://www.encodeproject.org/files/ENCFF164OJX/@@download/ENCFF164OJX.bigWig mm10 released low read length, low read depth ENCFF604SXS bed narrowPeak replicated peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF073PFG, ENCFF192JKH, ENCFF686NCH 808296 ENCODE Processing Pipeline f807cf13c7ef8142939c6a791f8cd97f https://www.encodeproject.org/files/ENCFF604SXS/@@download/ENCFF604SXS.bed.gz mm10 released low read length, low read depth ENCFF477WXK bigBed narrowPeak replicated peaks ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF604SXS 1746398 ENCODE Processing Pipeline 097d5e9ea3b95a8fbaca77a2fd00d930 https://www.encodeproject.org/files/ENCFF477WXK/@@download/ENCFF477WXK.bigBed mm10 released low read length, low read depth ENCFF535KNJ fastq reads ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2153589398 Bing Ren, UCSD bee0b284d9d38cc8ff557e6aef001c9b SRA:SRR3651787 https://www.encodeproject.org/files/ENCFF535KNJ/@@download/ENCFF535KNJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF324AEZ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF147DHF fastq reads ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 1921008430 Bing Ren, UCSD 5082140072fbb33790e01dc9c0254fee SRA:SRR3651788 https://www.encodeproject.org/files/ENCFF147DHF/@@download/ENCFF147DHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF637RQH/ released mild to moderate bottlenecking, inconsistent platforms ENCFF226HOB bam alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF535KNJ, ENCFF806TVZ 1562449380 ENCODE Processing Pipeline 6c4d23cf0e9177af294787addbde26c4 https://www.encodeproject.org/files/ENCFF226HOB/@@download/ENCFF226HOB.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF828RBX bam alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF147DHF, ENCFF806TVZ 1442846629 ENCODE Processing Pipeline 75e04b1182c00f3fb7f4cfad22414138 https://www.encodeproject.org/files/ENCFF828RBX/@@download/ENCFF828RBX.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF990VIN bed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101KOM, ENCFF226HOB 1606411 ENCODE Processing Pipeline f1b3a3023ad343af86a32b8a9f45bc72 https://www.encodeproject.org/files/ENCFF990VIN/@@download/ENCFF990VIN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF324HJR bigBed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF129IDP 4072185 ENCODE Processing Pipeline dbf02767ce06f13ad56b8e4367ebc774 https://www.encodeproject.org/files/ENCFF324HJR/@@download/ENCFF324HJR.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF129IDP bed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF828RBX 1815797 ENCODE Processing Pipeline cec921332f5b25c5da0e5d5ffd1aca83 https://www.encodeproject.org/files/ENCFF129IDP/@@download/ENCFF129IDP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF536OPH bed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF226HOB, ENCFF828RBX 2120314 ENCODE Processing Pipeline 22f5c7cddd4753dfea855907caba7738 https://www.encodeproject.org/files/ENCFF536OPH/@@download/ENCFF536OPH.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF646QKH bigBed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF990VIN 3645858 ENCODE Processing Pipeline dae8a84cf6f15dff0540f1264d5383c3 https://www.encodeproject.org/files/ENCFF646QKH/@@download/ENCFF646QKH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF506MLG bigWig signal p-value ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF828RBX 570795279 ENCODE Processing Pipeline 4a47f521366fa469d3d1c21371a27b63 https://www.encodeproject.org/files/ENCFF506MLG/@@download/ENCFF506MLG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF077ETJ bigBed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF536OPH 5868431 ENCODE Processing Pipeline 4e4247df009c623d53a2f98fb855953d https://www.encodeproject.org/files/ENCFF077ETJ/@@download/ENCFF077ETJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF678ANI bigWig signal p-value ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101KOM, ENCFF226HOB 516876485 ENCODE Processing Pipeline ad7eb333630a5026eca0713c1f134988 https://www.encodeproject.org/files/ENCFF678ANI/@@download/ENCFF678ANI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF227GFC bigWig signal p-value ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF226HOB, ENCFF828RBX 936609879 ENCODE Processing Pipeline 1ed6a4564ac432ce5187fba8f4688ba2 https://www.encodeproject.org/files/ENCFF227GFC/@@download/ENCFF227GFC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF043URO bigWig fold change over control ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101KOM, ENCFF226HOB 587779499 ENCODE Processing Pipeline e34c657b8d05c11f2459ece28a694b61 https://www.encodeproject.org/files/ENCFF043URO/@@download/ENCFF043URO.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF971QJO bigWig fold change over control ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF828RBX 512029791 ENCODE Processing Pipeline 213f175c89285688f294065c25779812 https://www.encodeproject.org/files/ENCFF971QJO/@@download/ENCFF971QJO.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF750OQJ bed narrowPeak replicated peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF129IDP, ENCFF536OPH, ENCFF990VIN 1591694 ENCODE Processing Pipeline 4b5212b87c8944ad3f72097dfd7b8170 https://www.encodeproject.org/files/ENCFF750OQJ/@@download/ENCFF750OQJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF570VDB bigWig fold change over control ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF226HOB, ENCFF828RBX 996945455 ENCODE Processing Pipeline bb9b12453e30a23cab59f3f05d53b9cf https://www.encodeproject.org/files/ENCFF570VDB/@@download/ENCFF570VDB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF241KJA bigBed narrowPeak replicated peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF750OQJ 3585799 ENCODE Processing Pipeline 83940f9f323286b0a99eda24720d3842 https://www.encodeproject.org/files/ENCFF241KJA/@@download/ENCFF241KJA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF095SUD bam unfiltered alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF147DHF 2227052539 ENCODE Processing Pipeline e36076f78cffbad2a82b30587d087f1f https://www.encodeproject.org/files/ENCFF095SUD/@@download/ENCFF095SUD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF520CTN bam unfiltered alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF535KNJ 2493195444 ENCODE Processing Pipeline 7f49d4dfd334271baa6578e758c75527 https://www.encodeproject.org/files/ENCFF520CTN/@@download/ENCFF520CTN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF235IHH bam alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF147DHF 1442631388 ENCODE Processing Pipeline f9debca1d326fd551c78ad5ec99f4175 https://www.encodeproject.org/files/ENCFF235IHH/@@download/ENCFF235IHH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF506WBP bam alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF535KNJ 1562182711 ENCODE Processing Pipeline f9db2231ebe1d3b0177043e1eed4af75 https://www.encodeproject.org/files/ENCFF506WBP/@@download/ENCFF506WBP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF915ZQJ bed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF235IHH, ENCFF904KQI 1851314 ENCODE Processing Pipeline 3bed06d7d46837f12ad5f3ac258ae7c6 https://www.encodeproject.org/files/ENCFF915ZQJ/@@download/ENCFF915ZQJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF454GPJ bed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF506WBP, ENCFF814RAT 1627420 ENCODE Processing Pipeline 7a2e62290f91fb992881442c603628ce https://www.encodeproject.org/files/ENCFF454GPJ/@@download/ENCFF454GPJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF382FMX bed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF235IHH, ENCFF506WBP, ENCFF814RAT, ENCFF904KQI 2153466 ENCODE Processing Pipeline d69eda2f34affac055871ce6c37796f6 https://www.encodeproject.org/files/ENCFF382FMX/@@download/ENCFF382FMX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF378GPZ bigBed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF915ZQJ 4140679 ENCODE Processing Pipeline 66c8a0d6e472e0e427700247f5c1732f https://www.encodeproject.org/files/ENCFF378GPZ/@@download/ENCFF378GPZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF865ADY bigBed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF454GPJ 3679913 ENCODE Processing Pipeline 0ab41dead2aa0e4679390d264c01c5f7 https://www.encodeproject.org/files/ENCFF865ADY/@@download/ENCFF865ADY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF614XXH bigBed narrowPeak peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF382FMX 5974274 ENCODE Processing Pipeline 097d7cfdfd9a68e88005f8e8c370dca3 https://www.encodeproject.org/files/ENCFF614XXH/@@download/ENCFF614XXH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF556BBS bigWig signal p-value ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF235IHH, ENCFF904KQI 483919816 ENCODE Processing Pipeline ec18e77a793e45a01beb09d0fcf34c3e https://www.encodeproject.org/files/ENCFF556BBS/@@download/ENCFF556BBS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF095XLQ bigWig signal p-value ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF506WBP, ENCFF814RAT 635262292 ENCODE Processing Pipeline 1580d53e2a17622cf149c581c0fe29d8 https://www.encodeproject.org/files/ENCFF095XLQ/@@download/ENCFF095XLQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF763ZDW bigWig signal p-value ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF235IHH, ENCFF506WBP, ENCFF814RAT, ENCFF904KQI 1072114030 ENCODE Processing Pipeline fc9a03311631ba5c78808c2bd5834df2 https://www.encodeproject.org/files/ENCFF763ZDW/@@download/ENCFF763ZDW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF607KSH bigWig fold change over control ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF235IHH, ENCFF904KQI 593945927 ENCODE Processing Pipeline ab16d4295cae8f4ef26c3ce59eaab062 https://www.encodeproject.org/files/ENCFF607KSH/@@download/ENCFF607KSH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF400KKX bigWig fold change over control ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF506WBP, ENCFF814RAT 616390293 ENCODE Processing Pipeline 48ced6081248c17f8f6bdfeb0c72dd35 https://www.encodeproject.org/files/ENCFF400KKX/@@download/ENCFF400KKX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF066PYN bigWig fold change over control ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF235IHH, ENCFF506WBP, ENCFF814RAT, ENCFF904KQI 1169030308 ENCODE Processing Pipeline f58dabba265c5d345154d51c5ee96853 https://www.encodeproject.org/files/ENCFF066PYN/@@download/ENCFF066PYN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF659YSV bed narrowPeak replicated peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF382FMX, ENCFF454GPJ, ENCFF915ZQJ 1639628 ENCODE Processing Pipeline 96551c8277e5f7103b3663257dc693bf https://www.encodeproject.org/files/ENCFF659YSV/@@download/ENCFF659YSV.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF351OXQ bigBed narrowPeak replicated peaks ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF659YSV 3651320 ENCODE Processing Pipeline 8d5a4486bab75d6dc07bf544ee56c43b https://www.encodeproject.org/files/ENCFF351OXQ/@@download/ENCFF351OXQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002DRZ fastq reads ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 2 36 single-ended 296507311 Bing Ren, UCSD fa5e3f6e8fc9ac933afbb9f4573dadd9 SRA:SRR3651271 https://www.encodeproject.org/files/ENCFF002DRZ/@@download/ENCFF002DRZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARJ/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates ENCFF002DSB fastq reads ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 36 single-ended 338579024 Bing Ren, UCSD b96ea7b79432343cdea884590a8f4392 SRA:SRR3651269 https://www.encodeproject.org/files/ENCFF002DSB/@@download/ENCFF002DSB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARK/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates ENCFF002DSE fastq reads ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1568359522 Bing Ren, UCSD 9c644aacff311d53260a45defdc4d6d1 SRA:SRR3651272 https://www.encodeproject.org/files/ENCFF002DSE/@@download/ENCFF002DSE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARJ/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates ENCFF002DSF fastq reads ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1869839505 Bing Ren, UCSD 05100a659900742c5cd9e6fff3f7761d SRA:SRR3651270 https://www.encodeproject.org/files/ENCFF002DSF/@@download/ENCFF002DSF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARK/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates ENCFF459JXT bam alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002DRZ, ENCFF002DSE, ENCFF806TVZ 1034654605 ENCODE Processing Pipeline 835ebc148c85b35d19887aa477bc6866 https://www.encodeproject.org/files/ENCFF459JXT/@@download/ENCFF459JXT.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF406XLW bam alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002DSB, ENCFF002DSF, ENCFF806TVZ 1120573865 ENCODE Processing Pipeline 91dd7a5c11a2b2f5fb428b0b17af4606 https://www.encodeproject.org/files/ENCFF406XLW/@@download/ENCFF406XLW.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF179PXE bed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF406XLW, ENCFF444YOE, ENCFF934LFS 809758 ENCODE Processing Pipeline c24642a01ddef9a06219882e0c164dcd https://www.encodeproject.org/files/ENCFF179PXE/@@download/ENCFF179PXE.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF603USW bed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF444YOE, ENCFF459JXT, ENCFF934LFS 408376 ENCODE Processing Pipeline 340f56c82d94ab011b909b58882b795c https://www.encodeproject.org/files/ENCFF603USW/@@download/ENCFF603USW.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF016SKN bed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF406XLW, ENCFF444YOE, ENCFF459JXT, ENCFF934LFS 632058 ENCODE Processing Pipeline 8048c463f9235fb75d73aa2b4c7f17b3 https://www.encodeproject.org/files/ENCFF016SKN/@@download/ENCFF016SKN.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF434KFF bigWig signal p-value ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF406XLW, ENCFF444YOE, ENCFF934LFS 428324869 ENCODE Processing Pipeline ce3c86a9f497259a09f20f02222a4ac1 https://www.encodeproject.org/files/ENCFF434KFF/@@download/ENCFF434KFF.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF588IGB bigBed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF179PXE 1736155 ENCODE Processing Pipeline ed6ad41fe22c52912f78165d265110c4 https://www.encodeproject.org/files/ENCFF588IGB/@@download/ENCFF588IGB.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF264IDH bigBed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF603USW 794546 ENCODE Processing Pipeline 2e94d28a7b950133eca2c4946b5e148c https://www.encodeproject.org/files/ENCFF264IDH/@@download/ENCFF264IDH.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF969AGL bigBed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF016SKN 1380318 ENCODE Processing Pipeline db9a807975048b88a5fbbbc4bec30fe8 https://www.encodeproject.org/files/ENCFF969AGL/@@download/ENCFF969AGL.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF381ETU bigWig signal p-value ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF444YOE, ENCFF459JXT, ENCFF934LFS 578949504 ENCODE Processing Pipeline 3bb7f02404db2d3d7b0abdf3ce2c055a https://www.encodeproject.org/files/ENCFF381ETU/@@download/ENCFF381ETU.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF747SVR bigWig signal p-value ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF406XLW, ENCFF444YOE, ENCFF459JXT, ENCFF934LFS 812773220 ENCODE Processing Pipeline 23283a91d2d6ef48445b4cc3afc57150 https://www.encodeproject.org/files/ENCFF747SVR/@@download/ENCFF747SVR.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF689XIN bigWig fold change over control ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF406XLW, ENCFF444YOE, ENCFF934LFS 515307106 ENCODE Processing Pipeline 52f6e7e767dabb7a92d77b03180ebf9e https://www.encodeproject.org/files/ENCFF689XIN/@@download/ENCFF689XIN.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF147QZI bigWig fold change over control ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF444YOE, ENCFF459JXT, ENCFF934LFS 520260801 ENCODE Processing Pipeline 13f9b9c554c2b91ad558022369d033ff https://www.encodeproject.org/files/ENCFF147QZI/@@download/ENCFF147QZI.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF599CML bigWig fold change over control ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF406XLW, ENCFF444YOE, ENCFF459JXT, ENCFF934LFS 822985797 ENCODE Processing Pipeline caa671dcb154d6f03c59c0c350e907ed https://www.encodeproject.org/files/ENCFF599CML/@@download/ENCFF599CML.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF648KVC bed narrowPeak replicated peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF016SKN, ENCFF179PXE, ENCFF603USW 254589 ENCODE Processing Pipeline b121cecdcfefe446765e8d1d2e4522a4 https://www.encodeproject.org/files/ENCFF648KVC/@@download/ENCFF648KVC.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF594REC bigBed narrowPeak replicated peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF648KVC 686043 ENCODE Processing Pipeline e4c7f37caa6f5a99720c283f79c1b2ce https://www.encodeproject.org/files/ENCFF594REC/@@download/ENCFF594REC.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates ENCFF427INE bam unfiltered alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DRZ, ENCFF002DSE, ENCFF018NEO 2365780890 ENCODE Processing Pipeline bcd73d226c1bad0f713c0f12e06961ee https://www.encodeproject.org/files/ENCFF427INE/@@download/ENCFF427INE.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF433HOL bam unfiltered alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSB, ENCFF002DSF, ENCFF018NEO 2778530811 ENCODE Processing Pipeline a0289c17f5d785630ae3d51e89ea641d https://www.encodeproject.org/files/ENCFF433HOL/@@download/ENCFF433HOL.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF127ZWH bam alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DRZ, ENCFF002DSE, ENCFF018NEO 1033933453 ENCODE Processing Pipeline 73f46dae3e4906069de60dedfbf1fd23 https://www.encodeproject.org/files/ENCFF127ZWH/@@download/ENCFF127ZWH.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF695DES bam alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSB, ENCFF002DSF, ENCFF018NEO 1119828265 ENCODE Processing Pipeline 5f6d45b541a43c0bdf32e98454fdd207 https://www.encodeproject.org/files/ENCFF695DES/@@download/ENCFF695DES.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF216JEY bed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF127ZWH, ENCFF319PHE, ENCFF681SBF 358363 ENCODE Processing Pipeline 779aa24d1c0b665b82af67e3b2da94a5 https://www.encodeproject.org/files/ENCFF216JEY/@@download/ENCFF216JEY.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF172RBV bed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF127ZWH, ENCFF319PHE, ENCFF681SBF, ENCFF695DES 530272 ENCODE Processing Pipeline 8c94f9f5c33df953df8b697402c5dc7b https://www.encodeproject.org/files/ENCFF172RBV/@@download/ENCFF172RBV.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF720IJO bed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF695DES 722817 ENCODE Processing Pipeline db97eec9cf3002d6f18ba2d6598e0bdd https://www.encodeproject.org/files/ENCFF720IJO/@@download/ENCFF720IJO.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF935PFG bigBed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF720IJO 1562312 ENCODE Processing Pipeline 93e7594306a4d940ac4783857285c3a3 https://www.encodeproject.org/files/ENCFF935PFG/@@download/ENCFF935PFG.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF442OZD bigBed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF216JEY 718130 ENCODE Processing Pipeline 3365ea344c5c9f222a63a36567a1ea35 https://www.encodeproject.org/files/ENCFF442OZD/@@download/ENCFF442OZD.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF387UPN bigBed narrowPeak peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF172RBV 1170991 ENCODE Processing Pipeline 126687853a3070eee02584a34f40eddb https://www.encodeproject.org/files/ENCFF387UPN/@@download/ENCFF387UPN.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF130WPR bigWig signal p-value ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF695DES 427148835 ENCODE Processing Pipeline 039f361216fcccb302e5fe013a6cdaf1 https://www.encodeproject.org/files/ENCFF130WPR/@@download/ENCFF130WPR.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF625WRA bigWig signal p-value ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF127ZWH, ENCFF319PHE, ENCFF681SBF 459774403 ENCODE Processing Pipeline 22c99e00099b1836fe43ffa6a81d71d3 https://www.encodeproject.org/files/ENCFF625WRA/@@download/ENCFF625WRA.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF041JPE bigWig signal p-value ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF127ZWH, ENCFF319PHE, ENCFF681SBF, ENCFF695DES 744406380 ENCODE Processing Pipeline 3d3d7db658413cc9387f6dd1164d8113 https://www.encodeproject.org/files/ENCFF041JPE/@@download/ENCFF041JPE.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF760NMK bigWig fold change over control ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF319PHE, ENCFF681SBF, ENCFF695DES 513418315 ENCODE Processing Pipeline e524e9cb124ebb458d0edfbc965b09e8 https://www.encodeproject.org/files/ENCFF760NMK/@@download/ENCFF760NMK.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF823UFA bigWig fold change over control ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF127ZWH, ENCFF319PHE, ENCFF681SBF 489501060 ENCODE Processing Pipeline 910e8a631f35f21753cd4d1d31a12c8c https://www.encodeproject.org/files/ENCFF823UFA/@@download/ENCFF823UFA.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF887HCS bigWig fold change over control ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF127ZWH, ENCFF319PHE, ENCFF681SBF, ENCFF695DES 789061357 ENCODE Processing Pipeline 66a0647b3a2bb33c37596bcad9dbfca7 https://www.encodeproject.org/files/ENCFF887HCS/@@download/ENCFF887HCS.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF696FPS bed narrowPeak replicated peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF172RBV, ENCFF216JEY, ENCFF720IJO 238650 ENCODE Processing Pipeline 50c440c6760f77cf401dd5b95deb4875 https://www.encodeproject.org/files/ENCFF696FPS/@@download/ENCFF696FPS.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF287BSQ bigBed narrowPeak replicated peaks ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF696FPS 647240 ENCODE Processing Pipeline e82403484eb5ffe0588d681a6265fde6 https://www.encodeproject.org/files/ENCFF287BSQ/@@download/ENCFF287BSQ.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF349WTC fastq reads ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 1868887648 Bing Ren, UCSD 3ace58566570777aea52a9c9d58f3503 SRA:SRR3652871 https://www.encodeproject.org/files/ENCFF349WTC/@@download/ENCFF349WTC.fastq.gz Illumina HiSeq 2000 /files/ENCFF545UQA/ released mild to moderate bottlenecking, inconsistent platforms ENCFF322WUF fastq reads ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2240445763 Bing Ren, UCSD 65622102bd7a8e1d0bfbab71244812b0 SRA:SRR3652872 https://www.encodeproject.org/files/ENCFF322WUF/@@download/ENCFF322WUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF393EAJ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF486JTJ bam alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF322WUF, ENCFF806TVZ 1689174872 ENCODE Processing Pipeline d0b8261f7020b3b505e38da264f0dc78 https://www.encodeproject.org/files/ENCFF486JTJ/@@download/ENCFF486JTJ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF026OCE bam alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF349WTC, ENCFF806TVZ 1365555910 ENCODE Processing Pipeline f8b711abaeef7ebc889628f03dd8d2be https://www.encodeproject.org/files/ENCFF026OCE/@@download/ENCFF026OCE.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF612MYO bed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF026OCE, ENCFF627MYB 1839749 ENCODE Processing Pipeline 75f6f9ec23677faa1932406ffe7af4f1 https://www.encodeproject.org/files/ENCFF612MYO/@@download/ENCFF612MYO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF875EQY bigBed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF711GXB 5124083 ENCODE Processing Pipeline f3b27aebb8ed9510b2fa546a4e7e1949 https://www.encodeproject.org/files/ENCFF875EQY/@@download/ENCFF875EQY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF711GXB bed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF371GCA, ENCFF486JTJ 1857638 ENCODE Processing Pipeline 5722ad47d145e0bfa833a61e6f36910f https://www.encodeproject.org/files/ENCFF711GXB/@@download/ENCFF711GXB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF791QMB bed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF026OCE, ENCFF371GCA, ENCFF486JTJ, ENCFF627MYB 2170574 ENCODE Processing Pipeline d1dd6e0f496c56d7b3fd0e42bd4cfa15 https://www.encodeproject.org/files/ENCFF791QMB/@@download/ENCFF791QMB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF365BUY bigBed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF791QMB 5833702 ENCODE Processing Pipeline e97f18cf45bc5b5bb2436c12cb5cfe15 https://www.encodeproject.org/files/ENCFF365BUY/@@download/ENCFF365BUY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF850GTZ bigWig signal p-value ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF026OCE, ENCFF627MYB 447074580 ENCODE Processing Pipeline 7af0735bfb484f71296452aa9e320439 https://www.encodeproject.org/files/ENCFF850GTZ/@@download/ENCFF850GTZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF142PSC bigBed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF612MYO 5030754 ENCODE Processing Pipeline 1fab39c3b6f5ebf43a032781df3092ec https://www.encodeproject.org/files/ENCFF142PSC/@@download/ENCFF142PSC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF524APX bigWig signal p-value ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF371GCA, ENCFF486JTJ 560286764 ENCODE Processing Pipeline 91ab291defeaa9f66e25b67a513fcffe https://www.encodeproject.org/files/ENCFF524APX/@@download/ENCFF524APX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF124YVH bigWig signal p-value ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF026OCE, ENCFF371GCA, ENCFF486JTJ, ENCFF627MYB 849037241 ENCODE Processing Pipeline 40062023fb94c25c3609481e9ce17527 https://www.encodeproject.org/files/ENCFF124YVH/@@download/ENCFF124YVH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF187ISM bigWig fold change over control ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF026OCE, ENCFF627MYB 501387900 ENCODE Processing Pipeline 898725fe39f32c932d6945f290b69ad3 https://www.encodeproject.org/files/ENCFF187ISM/@@download/ENCFF187ISM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF033EXH bigWig fold change over control ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF371GCA, ENCFF486JTJ 637591059 ENCODE Processing Pipeline 39d0e2cec989fdead6b748a8a09a5d0f https://www.encodeproject.org/files/ENCFF033EXH/@@download/ENCFF033EXH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF849HNR bigWig fold change over control ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF026OCE, ENCFF371GCA, ENCFF486JTJ, ENCFF627MYB 1031730060 ENCODE Processing Pipeline 1d050fca0e1e22b10c9fe34293caf43a https://www.encodeproject.org/files/ENCFF849HNR/@@download/ENCFF849HNR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF500VQU bigBed narrowPeak replicated peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF354TNR 3719994 ENCODE Processing Pipeline 391aa44c20e7ba3b42d56fa49a5f2325 https://www.encodeproject.org/files/ENCFF500VQU/@@download/ENCFF500VQU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF354TNR bed narrowPeak replicated peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF612MYO, ENCFF711GXB, ENCFF791QMB 1777102 ENCODE Processing Pipeline 9b82357bc1cf45d6310bc905b8790206 https://www.encodeproject.org/files/ENCFF354TNR/@@download/ENCFF354TNR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF706POI bam unfiltered alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF349WTC 2148183026 ENCODE Processing Pipeline da9f59d9efec65fc48f680a677de5bb2 https://www.encodeproject.org/files/ENCFF706POI/@@download/ENCFF706POI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF833TVU bam unfiltered alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF322WUF 2585337217 ENCODE Processing Pipeline 24897cbd4c869083857abbf41919d0a3 https://www.encodeproject.org/files/ENCFF833TVU/@@download/ENCFF833TVU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF695YAS bam alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF322WUF 1688875530 ENCODE Processing Pipeline bda495c10bc63df1089a88310d37ea7b https://www.encodeproject.org/files/ENCFF695YAS/@@download/ENCFF695YAS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF982HXU bam alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF349WTC 1365313913 ENCODE Processing Pipeline 044c75cec00c8cf2d8ed28071ee70ba8 https://www.encodeproject.org/files/ENCFF982HXU/@@download/ENCFF982HXU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF110DGO bed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF884PDZ, ENCFF982HXU 1880439 ENCODE Processing Pipeline 4a1a56f41923cf1b2ea040df4374482b https://www.encodeproject.org/files/ENCFF110DGO/@@download/ENCFF110DGO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF859DHZ bed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF695YAS 1847285 ENCODE Processing Pipeline 8b651379af7c007a17cdeefca468b9ad https://www.encodeproject.org/files/ENCFF859DHZ/@@download/ENCFF859DHZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF764BSR bed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF695YAS, ENCFF884PDZ, ENCFF982HXU 2210009 ENCODE Processing Pipeline a37d170097eab5323ceacd62f88bc545 https://www.encodeproject.org/files/ENCFF764BSR/@@download/ENCFF764BSR.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF713EDC bigBed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF110DGO 5145688 ENCODE Processing Pipeline 8e566d9b17346080f849e0c9c4b91d04 https://www.encodeproject.org/files/ENCFF713EDC/@@download/ENCFF713EDC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF982WMH bigBed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF859DHZ 5081906 ENCODE Processing Pipeline 12634b42646101c03c676184f54695f7 https://www.encodeproject.org/files/ENCFF982WMH/@@download/ENCFF982WMH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF605FNC bigBed narrowPeak peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF764BSR 5938231 ENCODE Processing Pipeline 207b7d00e62c2b7ee525d2a170f806ac https://www.encodeproject.org/files/ENCFF605FNC/@@download/ENCFF605FNC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF098BDB bigWig signal p-value ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF884PDZ, ENCFF982HXU 646708554 ENCODE Processing Pipeline cfedf482d26fdcb503cbf694c885a123 https://www.encodeproject.org/files/ENCFF098BDB/@@download/ENCFF098BDB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF793CZP bigWig signal p-value ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF695YAS 616986330 ENCODE Processing Pipeline f0743d4837234d5bcbbc995e609f1acf https://www.encodeproject.org/files/ENCFF793CZP/@@download/ENCFF793CZP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF790OFF bigWig signal p-value ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF695YAS, ENCFF884PDZ, ENCFF982HXU 1193143445 ENCODE Processing Pipeline 3fb9e7d1a702927dfe264ff114fc2feb https://www.encodeproject.org/files/ENCFF790OFF/@@download/ENCFF790OFF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF827JGU bigWig fold change over control ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF884PDZ, ENCFF982HXU 568460537 ENCODE Processing Pipeline 646192c4678918a083c1ea13674e83a4 https://www.encodeproject.org/files/ENCFF827JGU/@@download/ENCFF827JGU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF220YUI bigWig fold change over control ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF695YAS 639561173 ENCODE Processing Pipeline 339e8ba47e1fdda95fb81ba00efacf90 https://www.encodeproject.org/files/ENCFF220YUI/@@download/ENCFF220YUI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF870SQY bigWig fold change over control ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF695YAS, ENCFF884PDZ, ENCFF982HXU 1160660193 ENCODE Processing Pipeline 5d7c9017866361114f6323427d99f403 https://www.encodeproject.org/files/ENCFF870SQY/@@download/ENCFF870SQY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF583IBI bed narrowPeak replicated peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF110DGO, ENCFF764BSR, ENCFF859DHZ 1807069 ENCODE Processing Pipeline 7b8038efa13b4cd306170e30dca578fa https://www.encodeproject.org/files/ENCFF583IBI/@@download/ENCFF583IBI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF179FZV bigBed narrowPeak replicated peaks ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF583IBI 3753562 ENCODE Processing Pipeline aef26b833d47201fc2964e9b54000246 https://www.encodeproject.org/files/ENCFF179FZV/@@download/ENCFF179FZV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001KTL bam alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KTR 293105459 Bing Ren, UCSD 2cc187f08000f0975797b60825dc9f92 https://www.encodeproject.org/files/ENCFF001KTL/@@download/ENCFF001KTL.bam mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KTM bigBed broadPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYW 734478 Bing Ren, UCSD 5ff32723dab4f2c776c9d45f7fa7c55b https://www.encodeproject.org/files/ENCFF001KTM/@@download/ENCFF001KTM.bigBed mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KTN bam alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KTS 430816908 Bing Ren, UCSD 446aa86f1f3611728f277911580adc0e https://www.encodeproject.org/files/ENCFF001KTN/@@download/ENCFF001KTN.bam mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KTP bigWig signal ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KTL, ENCFF001KTN 55330255 Bing Ren, UCSD 7eca4933be2d10c2acc93e91308215f9 https://www.encodeproject.org/files/ENCFF001KTP/@@download/ENCFF001KTP.bigWig mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KTR fastq reads ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 339254687 Bing Ren, UCSD a80c71a54dbd67cbba7db4a520ecf160 https://www.encodeproject.org/files/ENCFF001KTR/@@download/ENCFF001KTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUJ/ released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KTS fastq reads ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 514388730 Bing Ren, UCSD d2df068dda690465736c022e4c44ab67 https://www.encodeproject.org/files/ENCFF001KTS/@@download/ENCFF001KTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001XYW bed broadPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KTL, ENCFF001KTN 487159 Bing Ren, UCSD 06b3ed9b1018230bcd01211f3813f497 https://www.encodeproject.org/files/ENCFF001XYW/@@download/ENCFF001XYW.bed.gz mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF780AXP bam unfiltered alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTR, ENCFF018NEO 386626916 ENCODE Processing Pipeline ab863b62fd6e35eebaaa362eb1e5e7a1 https://www.encodeproject.org/files/ENCFF780AXP/@@download/ENCFF780AXP.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF044LMH bam unfiltered alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTS, ENCFF018NEO 574673516 ENCODE Processing Pipeline 194d3f37ee3837db2180f5d45b1c1d1a https://www.encodeproject.org/files/ENCFF044LMH/@@download/ENCFF044LMH.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF068LAD bam alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTR, ENCFF018NEO 296587754 ENCODE Processing Pipeline 6be47ca09a9371485a460c85b57582d3 https://www.encodeproject.org/files/ENCFF068LAD/@@download/ENCFF068LAD.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF520ZBA bam alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTS, ENCFF018NEO 427541197 ENCODE Processing Pipeline 78833c4e3b951b4599bf989958112e0f https://www.encodeproject.org/files/ENCFF520ZBA/@@download/ENCFF520ZBA.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF741SRW bed narrowPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF068LAD, ENCFF242QZL, ENCFF520ZBA, ENCFF769FTV 1939533 ENCODE Processing Pipeline 34c2a3c172f9ee0fcd2ce1ed39053371 https://www.encodeproject.org/files/ENCFF741SRW/@@download/ENCFF741SRW.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF832YLU bed narrowPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF520ZBA 1724686 ENCODE Processing Pipeline 17ce745b3f3f9b7ec763cee08d3067ed https://www.encodeproject.org/files/ENCFF832YLU/@@download/ENCFF832YLU.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF812GKY bigBed narrowPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF483CAU 4293814 ENCODE Processing Pipeline 9d7bc54d8142979982b14c50ee9ce37a https://www.encodeproject.org/files/ENCFF812GKY/@@download/ENCFF812GKY.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF483CAU bed narrowPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF068LAD, ENCFF769FTV 1532022 ENCODE Processing Pipeline b26183ebe3645317b1b2d3c54101a1f4 https://www.encodeproject.org/files/ENCFF483CAU/@@download/ENCFF483CAU.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF971ZYE bigBed narrowPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF741SRW 5175709 ENCODE Processing Pipeline 830f0dbf3d54269e2263dc5ae33c52aa https://www.encodeproject.org/files/ENCFF971ZYE/@@download/ENCFF971ZYE.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF657FOB bigWig signal p-value ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF068LAD, ENCFF769FTV 289823657 ENCODE Processing Pipeline 280b55cbac75b260be4543179e84cd8f https://www.encodeproject.org/files/ENCFF657FOB/@@download/ENCFF657FOB.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF033UZR bigWig signal p-value ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF520ZBA 287021003 ENCODE Processing Pipeline 1bf37b5f90f3ea391b667af538280aa0 https://www.encodeproject.org/files/ENCFF033UZR/@@download/ENCFF033UZR.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF155RCO bigBed narrowPeak peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF832YLU 4749897 ENCODE Processing Pipeline 567a94d8d7b79416d90fd121b8299351 https://www.encodeproject.org/files/ENCFF155RCO/@@download/ENCFF155RCO.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF256EQQ bigWig signal p-value ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF068LAD, ENCFF242QZL, ENCFF520ZBA, ENCFF769FTV 476478401 ENCODE Processing Pipeline 847e185f691b54cb820f2af4387e2ce2 https://www.encodeproject.org/files/ENCFF256EQQ/@@download/ENCFF256EQQ.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF356JWL bigWig fold change over control ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF242QZL, ENCFF520ZBA 227271320 ENCODE Processing Pipeline d6c6a371f893909d34d0400ee01a8db1 https://www.encodeproject.org/files/ENCFF356JWL/@@download/ENCFF356JWL.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF212SMS bigWig fold change over control ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF068LAD, ENCFF242QZL, ENCFF520ZBA, ENCFF769FTV 433492264 ENCODE Processing Pipeline 620a1c4761e8828369e922fbbad57478 https://www.encodeproject.org/files/ENCFF212SMS/@@download/ENCFF212SMS.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF362TMC bigWig fold change over control ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF068LAD, ENCFF769FTV 168429079 ENCODE Processing Pipeline 1c8b36d7a6754e09f21bc6532ec98390 https://www.encodeproject.org/files/ENCFF362TMC/@@download/ENCFF362TMC.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF047ETI bed narrowPeak replicated peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF483CAU, ENCFF741SRW, ENCFF832YLU 1871422 ENCODE Processing Pipeline ad57025586466de8981a9861b582d407 https://www.encodeproject.org/files/ENCFF047ETI/@@download/ENCFF047ETI.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF374YYE bigBed narrowPeak replicated peaks ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF047ETI 3610650 ENCODE Processing Pipeline 334988f6c6df81c05de6526707d33f0a https://www.encodeproject.org/files/ENCFF374YYE/@@download/ENCFF374YYE.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF002AIS fastq reads ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1160673914 Bing Ren, UCSD 60cc3757d6f0d1fdb1cb827c26af782e SRA:SRR3652704 https://www.encodeproject.org/files/ENCFF002AIS/@@download/ENCFF002AIS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released mild to moderate bottlenecking, mixed read lengths, control low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates insufficient read depth ENCFF002AIT fastq reads ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1347234745 Bing Ren, UCSD 608cf23152ed7bd142b97d445a42a504 SRA:SRR3652703 https://www.encodeproject.org/files/ENCFF002AIT/@@download/ENCFF002AIT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARB/ released mild to moderate bottlenecking, mixed read lengths, control low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates insufficient read depth ENCFF770VHW bam alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIT, ENCFF806TVZ 971641184 ENCODE Processing Pipeline 895be908838747b2292290155314eafa https://www.encodeproject.org/files/ENCFF770VHW/@@download/ENCFF770VHW.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF635OYR fastq reads ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 1002458218 Bing Ren, UCSD f5f077f9f3fa7c367445d18b9304ee33 SRA:SRR3652705 https://www.encodeproject.org/files/ENCFF635OYR/@@download/ENCFF635OYR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF193SJR bam alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIS, ENCFF635OYR, ENCFF806TVZ 1209992150 ENCODE Processing Pipeline 0f7007b380f62a85870a8d8f6f1ef2d6 https://www.encodeproject.org/files/ENCFF193SJR/@@download/ENCFF193SJR.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF012KCB bigBed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290DSD 5948374 ENCODE Processing Pipeline d9a8748a9dbe14faf9c4980f60c7fbaf https://www.encodeproject.org/files/ENCFF012KCB/@@download/ENCFF012KCB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF803DWF bed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF193SJR, ENCFF261VSL, ENCFF819FNM 2965002 ENCODE Processing Pipeline 613cd483385138a6b863f315ecec8a5a https://www.encodeproject.org/files/ENCFF803DWF/@@download/ENCFF803DWF.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF222QYF bigWig signal p-value ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF193SJR, ENCFF261VSL, ENCFF819FNM 429105202 ENCODE Processing Pipeline 9a263847950f0b4742db51a3b08e9241 https://www.encodeproject.org/files/ENCFF222QYF/@@download/ENCFF222QYF.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF290DSD bed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF193SJR, ENCFF261VSL, ENCFF770VHW, ENCFF819FNM 2765871 ENCODE Processing Pipeline ce1c28c954bd5c3c86376a75f7bfe3f1 https://www.encodeproject.org/files/ENCFF290DSD/@@download/ENCFF290DSD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF953IRD bed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF770VHW, ENCFF819FNM 3103975 ENCODE Processing Pipeline 8d579dfdda9e7327526b2900c45a6ce6 https://www.encodeproject.org/files/ENCFF953IRD/@@download/ENCFF953IRD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF505SAK bigBed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF953IRD 6854448 ENCODE Processing Pipeline e507e780f547df3663d949ed9ee64426 https://www.encodeproject.org/files/ENCFF505SAK/@@download/ENCFF505SAK.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF049RWS bigBed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF803DWF 6479684 ENCODE Processing Pipeline 8a65254c82812ba5a5015513441e79ca https://www.encodeproject.org/files/ENCFF049RWS/@@download/ENCFF049RWS.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF632VDE bigWig signal p-value ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF770VHW, ENCFF819FNM 526819982 ENCODE Processing Pipeline 3b0bc17a9bbc9c990e2e3e9c8a2532cf https://www.encodeproject.org/files/ENCFF632VDE/@@download/ENCFF632VDE.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF667ZDT bigWig fold change over control ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF770VHW, ENCFF819FNM 452610504 ENCODE Processing Pipeline 82ca54ed1bcf4bf0d25edefd7ebd06bc https://www.encodeproject.org/files/ENCFF667ZDT/@@download/ENCFF667ZDT.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF352XFZ bigWig signal p-value ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF193SJR, ENCFF261VSL, ENCFF770VHW, ENCFF819FNM 725083060 ENCODE Processing Pipeline 8289188f78c5d3b56a9d46ed303e6db2 https://www.encodeproject.org/files/ENCFF352XFZ/@@download/ENCFF352XFZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF536JGT bigWig fold change over control ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF193SJR, ENCFF261VSL, ENCFF819FNM 516272909 ENCODE Processing Pipeline ba16e94d60b9ecc09dca959511f77b34 https://www.encodeproject.org/files/ENCFF536JGT/@@download/ENCFF536JGT.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF921MYG bed narrowPeak replicated peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290DSD, ENCFF803DWF, ENCFF953IRD 2441869 ENCODE Processing Pipeline b1e8dabc4c9cb6626ec603b91479e6fb https://www.encodeproject.org/files/ENCFF921MYG/@@download/ENCFF921MYG.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF307KBM bigBed narrowPeak replicated peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF921MYG 4400240 ENCODE Processing Pipeline 83bbb8925d6555b157ddcd6fa00f6f14 https://www.encodeproject.org/files/ENCFF307KBM/@@download/ENCFF307KBM.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF946GID bigWig fold change over control ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF193SJR, ENCFF261VSL, ENCFF770VHW, ENCFF819FNM 796344068 ENCODE Processing Pipeline b9c768021c99d3b72f071d62e0afd79a https://www.encodeproject.org/files/ENCFF946GID/@@download/ENCFF946GID.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF601RRY bam unfiltered alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIS, ENCFF018NEO, ENCFF635OYR 2326758887 ENCODE Processing Pipeline a6d1e9cce1df80a7f3bed3fada03db64 https://www.encodeproject.org/files/ENCFF601RRY/@@download/ENCFF601RRY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF957HBY bam unfiltered alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIT, ENCFF018NEO 1599514882 ENCODE Processing Pipeline 6fcc2b7ec464fcc250215d2feda539db https://www.encodeproject.org/files/ENCFF957HBY/@@download/ENCFF957HBY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF400RXO bam alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIT, ENCFF018NEO 971417749 ENCODE Processing Pipeline 26d6bb64403f1d6a275ce3398fdfcc3e https://www.encodeproject.org/files/ENCFF400RXO/@@download/ENCFF400RXO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF763FKZ bam alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIS, ENCFF018NEO, ENCFF635OYR 1051141557 ENCODE Processing Pipeline f635cf0a6bc7db156d88d252f5127a79 https://www.encodeproject.org/files/ENCFF763FKZ/@@download/ENCFF763FKZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF603FOJ bed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF400RXO, ENCFF438SAE, ENCFF451QHB 2868129 ENCODE Processing Pipeline 639b573b6fa169d8865dda3e801424ae https://www.encodeproject.org/files/ENCFF603FOJ/@@download/ENCFF603FOJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF906OHE bed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF763FKZ 3414780 ENCODE Processing Pipeline 766277abe9c69b507f1bd83af4587e98 https://www.encodeproject.org/files/ENCFF906OHE/@@download/ENCFF906OHE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF666PVE bed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF400RXO, ENCFF438SAE, ENCFF451QHB, ENCFF763FKZ 2921361 ENCODE Processing Pipeline 31a58561b5c7b4e1e132968d90b21a1a https://www.encodeproject.org/files/ENCFF666PVE/@@download/ENCFF666PVE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF029AXT bigBed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF603FOJ 6462457 ENCODE Processing Pipeline e87cabae018cb4466fe6f4eaed6f9014 https://www.encodeproject.org/files/ENCFF029AXT/@@download/ENCFF029AXT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF585VKQ bigBed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF906OHE 7574374 ENCODE Processing Pipeline e31dd677860fbc23fca7c3173f239b3b https://www.encodeproject.org/files/ENCFF585VKQ/@@download/ENCFF585VKQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF649TVN bigBed narrowPeak peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF666PVE 6340249 ENCODE Processing Pipeline a43a017387be7de528dc4d73f2d7e204 https://www.encodeproject.org/files/ENCFF649TVN/@@download/ENCFF649TVN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF035BTI bigWig signal p-value ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF400RXO, ENCFF438SAE, ENCFF451QHB 462448660 ENCODE Processing Pipeline 3a6312ec5061e73d265a5eeeb14d3c04 https://www.encodeproject.org/files/ENCFF035BTI/@@download/ENCFF035BTI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF099SNE bigWig signal p-value ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF763FKZ 438505117 ENCODE Processing Pipeline cfe59d5368b6602ac39a0e890593cb57 https://www.encodeproject.org/files/ENCFF099SNE/@@download/ENCFF099SNE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF229JQH bigWig signal p-value ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF400RXO, ENCFF438SAE, ENCFF451QHB, ENCFF763FKZ 668223246 ENCODE Processing Pipeline 699a68dc7bbe946e066300144e6d6c72 https://www.encodeproject.org/files/ENCFF229JQH/@@download/ENCFF229JQH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF792EFG bigWig fold change over control ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF400RXO, ENCFF438SAE, ENCFF451QHB 455848527 ENCODE Processing Pipeline 76b31153785a996a6d49dc115205c417 https://www.encodeproject.org/files/ENCFF792EFG/@@download/ENCFF792EFG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF576CAC bigWig fold change over control ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF763FKZ 463526796 ENCODE Processing Pipeline 8caa7678734bb41dde4e33013490b73a https://www.encodeproject.org/files/ENCFF576CAC/@@download/ENCFF576CAC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF555EBK bigWig fold change over control ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF400RXO, ENCFF438SAE, ENCFF451QHB, ENCFF763FKZ 755735455 ENCODE Processing Pipeline 60e300a2e0a447f648198843c85bb856 https://www.encodeproject.org/files/ENCFF555EBK/@@download/ENCFF555EBK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF369XCE bed narrowPeak replicated peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF603FOJ, ENCFF666PVE, ENCFF906OHE 2539677 ENCODE Processing Pipeline 789f22f65fef611ff6b638603a51b6fe https://www.encodeproject.org/files/ENCFF369XCE/@@download/ENCFF369XCE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF361EKE bigBed narrowPeak replicated peaks ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF369XCE 4592148 ENCODE Processing Pipeline a8d545a2794d53b4495b63bb43840215 https://www.encodeproject.org/files/ENCFF361EKE/@@download/ENCFF361EKE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF001NQZ bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJI 3024062 Michael Snyder, Stanford 9a0e8292d485a08e9b99928b1ffd0e2f https://www.encodeproject.org/files/ENCFF001NQZ/@@download/ENCFF001NQZ.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRG bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NRQ 501210840 Michael Snyder, Stanford 23d17c5a47e085aaf9c1f7c62860c523 https://www.encodeproject.org/files/ENCFF001NRG/@@download/ENCFF001NRG.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRH bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NRO 384521452 Michael Snyder, Stanford 639a6df2764f6fc852f73757b17977db https://www.encodeproject.org/files/ENCFF001NRH/@@download/ENCFF001NRH.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRI bigWig signal ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRG, ENCFF001NRH 306001220 Michael Snyder, Stanford cd3625141d4deddec58583df543f2008 https://www.encodeproject.org/files/ENCFF001NRI/@@download/ENCFF001NRI.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRO fastq reads ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 916820643 Michael Snyder, Stanford 58cae160a4926e589dbd9c89a132a8ac https://www.encodeproject.org/files/ENCFF001NRO/@@download/ENCFF001NRO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRQ fastq reads ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1162255225 Michael Snyder, Stanford 97248a1f5bcc75bc3c0e0d735cffc277 https://www.encodeproject.org/files/ENCFF001NRQ/@@download/ENCFF001NRQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJI bed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRG, ENCFF001NRH 1227546 Michael Snyder, Stanford 15c11c5be6b17165d7d72000cec4c90f https://www.encodeproject.org/files/ENCFF001YJI/@@download/ENCFF001YJI.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF280MLO bam unfiltered alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 988112950 ENCODE Processing Pipeline 5ea155371ccf83a08676f0eba30bdfda https://www.encodeproject.org/files/ENCFF280MLO/@@download/ENCFF280MLO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF356ALS bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 523433771 ENCODE Processing Pipeline fc25feda3d87c364c0e19dda4036a045 https://www.encodeproject.org/files/ENCFF356ALS/@@download/ENCFF356ALS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF576RKB bam unfiltered alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 1265946866 ENCODE Processing Pipeline 48c180ca54d99a1406dab0a0925d74df https://www.encodeproject.org/files/ENCFF576RKB/@@download/ENCFF576RKB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF079MWN bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 725071316 ENCODE Processing Pipeline ab1e4725ea22d1e34eb1bac2b14e2501 https://www.encodeproject.org/files/ENCFF079MWN/@@download/ENCFF079MWN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF993KMG bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 320717110 ENCODE Processing Pipeline 8a1f996d094b1b7044b74282cbc69c04 https://www.encodeproject.org/files/ENCFF993KMG/@@download/ENCFF993KMG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF218IPF bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 327320246 ENCODE Processing Pipeline cd9dc30435022d43726be336710d14f1 https://www.encodeproject.org/files/ENCFF218IPF/@@download/ENCFF218IPF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF515BPN bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 457292783 ENCODE Processing Pipeline 51c742c00df3932515c6679a29673994 https://www.encodeproject.org/files/ENCFF515BPN/@@download/ENCFF515BPN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF583EGX bed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 4715374 ENCODE Processing Pipeline ddd97ec989c73c253459d4b0b6ecc8b9 https://www.encodeproject.org/files/ENCFF583EGX/@@download/ENCFF583EGX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF496YAK bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 231515183 ENCODE Processing Pipeline 8bbe0d0ee4d710a29e22ea56c3fbd979 https://www.encodeproject.org/files/ENCFF496YAK/@@download/ENCFF496YAK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF591OWE bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 272210120 ENCODE Processing Pipeline cdb73f1e1bec071bfe353853af56d5be https://www.encodeproject.org/files/ENCFF591OWE/@@download/ENCFF591OWE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF460LZI bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 313895061 ENCODE Processing Pipeline 00895c902e12679966791f2aa2344375 https://www.encodeproject.org/files/ENCFF460LZI/@@download/ENCFF460LZI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF958LHR bed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 4852558 ENCODE Processing Pipeline fef2493ea2331cba9a6a648c0c476daf https://www.encodeproject.org/files/ENCFF958LHR/@@download/ENCFF958LHR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF955PBH bed narrowPeak conservative idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO, ENCFF547MET, ENCFF583EGX, ENCFF958LHR 637819 ENCODE Processing Pipeline 4e97ec0ed6a9e526c009a1c08124b76f https://www.encodeproject.org/files/ENCFF955PBH/@@download/ENCFF955PBH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF817XFN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF955PBH 1139426 ENCODE Processing Pipeline 61f0ad5a29d195c4e59cd4cb05484993 https://www.encodeproject.org/files/ENCFF817XFN/@@download/ENCFF817XFN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF543BMO bed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 4127012 ENCODE Processing Pipeline b22a4bfdfb91f45b33d9033cd4e9f0a5 https://www.encodeproject.org/files/ENCFF543BMO/@@download/ENCFF543BMO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF223ASW bed narrowPeak optimal idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO, ENCFF547MET, ENCFF583EGX, ENCFF958LHR 775076 ENCODE Processing Pipeline 48f656a23d53b1ca1c828da1ffe3a066 https://www.encodeproject.org/files/ENCFF223ASW/@@download/ENCFF223ASW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF304MER bigBed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF958LHR 10734144 ENCODE Processing Pipeline 50a7b815f53a983bad79853d15c7fb1e https://www.encodeproject.org/files/ENCFF304MER/@@download/ENCFF304MER.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF215IWE bigBed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO 8316299 ENCODE Processing Pipeline fced9b83d7b2b2de54535dbfa106ca5d https://www.encodeproject.org/files/ENCFF215IWE/@@download/ENCFF215IWE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF343YJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF223ASW 1327898 ENCODE Processing Pipeline 4c358c1ffc65c5e36d5a63c66c873145 https://www.encodeproject.org/files/ENCFF343YJO/@@download/ENCFF343YJO.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF900VFH bigBed narrowPeak peaks and background as input for IDR ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF583EGX 10513833 ENCODE Processing Pipeline d49b00be239e944b64438d86df1c0c59 https://www.encodeproject.org/files/ENCFF900VFH/@@download/ENCFF900VFH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF793OXW fastq reads ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2232618167 Bing Ren, UCSD 192851d87965d2e27f72d6148d309c07 SRA:SRR3652729 https://www.encodeproject.org/files/ENCFF793OXW/@@download/ENCFF793OXW.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF069RQA fastq reads ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2396852982 Bing Ren, UCSD 0d7066af642e71f98772549f64b8bb0a SRA:SRR3652728 https://www.encodeproject.org/files/ENCFF069RQA/@@download/ENCFF069RQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF402ZUD bam alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069RQA, ENCFF806TVZ 1510041368 ENCODE Processing Pipeline c903a046b1a16e461ca6d9298b0bdab5 https://www.encodeproject.org/files/ENCFF402ZUD/@@download/ENCFF402ZUD.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF688UYV bam alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF793OXW, ENCFF806TVZ 1438429850 ENCODE Processing Pipeline 468e853c78d9b75d77895eb2b5cb557f https://www.encodeproject.org/files/ENCFF688UYV/@@download/ENCFF688UYV.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF629JHI bigBed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF843CNA 3498510 ENCODE Processing Pipeline b202f529d5f7189bb14c5e0dfe9c1f95 https://www.encodeproject.org/files/ENCFF629JHI/@@download/ENCFF629JHI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF230GSB bed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF402ZUD, ENCFF541RVC, ENCFF674GBO, ENCFF688UYV 1917818 ENCODE Processing Pipeline 91a05e9cd5228e6f70768e6a82cc75ae https://www.encodeproject.org/files/ENCFF230GSB/@@download/ENCFF230GSB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF843CNA bed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF688UYV 1485397 ENCODE Processing Pipeline b25668185475dce5e9e0989460e64aa9 https://www.encodeproject.org/files/ENCFF843CNA/@@download/ENCFF843CNA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF904EJG bed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF402ZUD, ENCFF674GBO 1597315 ENCODE Processing Pipeline 74d6b7fbefe167720c87b32d6e5ec7f7 https://www.encodeproject.org/files/ENCFF904EJG/@@download/ENCFF904EJG.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF736PJZ bigBed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF904EJG 3712714 ENCODE Processing Pipeline d543a647c6927245134f2aa9daa2b25a https://www.encodeproject.org/files/ENCFF736PJZ/@@download/ENCFF736PJZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF922PGN bigBed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF230GSB 5460172 ENCODE Processing Pipeline 5de2a376fbd7c297c07e01f3b386088f https://www.encodeproject.org/files/ENCFF922PGN/@@download/ENCFF922PGN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF320HRV bigWig signal p-value ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF402ZUD, ENCFF674GBO 527489835 ENCODE Processing Pipeline d4ed1574fec4f089930fb495f6c3a170 https://www.encodeproject.org/files/ENCFF320HRV/@@download/ENCFF320HRV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF640TBS bigWig signal p-value ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF688UYV 495798113 ENCODE Processing Pipeline 4a1a5c20e7ae5c50eef20011dc1a878f https://www.encodeproject.org/files/ENCFF640TBS/@@download/ENCFF640TBS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF769FMG bigWig signal p-value ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF402ZUD, ENCFF541RVC, ENCFF674GBO, ENCFF688UYV 1014963495 ENCODE Processing Pipeline ba2afc6dec9c3acf8b603e50e4cf574b https://www.encodeproject.org/files/ENCFF769FMG/@@download/ENCFF769FMG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF050APV bigWig fold change over control ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF688UYV 523549245 ENCODE Processing Pipeline 19c1f0842dc0fb5d111554895d139158 https://www.encodeproject.org/files/ENCFF050APV/@@download/ENCFF050APV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF912XCG bigWig fold change over control ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF402ZUD, ENCFF674GBO 524015266 ENCODE Processing Pipeline 584d552a4c339fc1d2bc80a59077ddc1 https://www.encodeproject.org/files/ENCFF912XCG/@@download/ENCFF912XCG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF904BHC bigWig fold change over control ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF402ZUD, ENCFF541RVC, ENCFF674GBO, ENCFF688UYV 1047970439 ENCODE Processing Pipeline 94c772e9e641c3663581ac1f57756b6c https://www.encodeproject.org/files/ENCFF904BHC/@@download/ENCFF904BHC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF882OIP bigBed narrowPeak replicated peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF071ZHK 3043636 ENCODE Processing Pipeline ea3fa55937a156f74afb34de8bb7494e https://www.encodeproject.org/files/ENCFF882OIP/@@download/ENCFF882OIP.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF071ZHK bed narrowPeak replicated peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF230GSB, ENCFF843CNA, ENCFF904EJG 1333563 ENCODE Processing Pipeline a50083bc467d07d76072ce7d3cd81703 https://www.encodeproject.org/files/ENCFF071ZHK/@@download/ENCFF071ZHK.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF969HJP bam unfiltered alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF069RQA 2717712897 ENCODE Processing Pipeline 15476b4b9fc97efcf1d8ce3ea3c9eb60 https://www.encodeproject.org/files/ENCFF969HJP/@@download/ENCFF969HJP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF490RFW bam unfiltered alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF793OXW 2542094823 ENCODE Processing Pipeline 891a4431742d735566fc6b5b10cbf3dd https://www.encodeproject.org/files/ENCFF490RFW/@@download/ENCFF490RFW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF449TKZ bam alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF793OXW 1438136794 ENCODE Processing Pipeline 7635c2c2106db05d90c60ebf2056539d https://www.encodeproject.org/files/ENCFF449TKZ/@@download/ENCFF449TKZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF031GNX bam alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF069RQA 1509722644 ENCODE Processing Pipeline 7d0c1b4320926ac3719094b46b84014a https://www.encodeproject.org/files/ENCFF031GNX/@@download/ENCFF031GNX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF385CXA bed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF449TKZ, ENCFF561HVM 1569447 ENCODE Processing Pipeline 9c14ded18383212f85a046dbd93a4390 https://www.encodeproject.org/files/ENCFF385CXA/@@download/ENCFF385CXA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF489RLJ bed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF031GNX, ENCFF962XXR 1681050 ENCODE Processing Pipeline 13d1f047486cae5e93c5f4003a0e463a https://www.encodeproject.org/files/ENCFF489RLJ/@@download/ENCFF489RLJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF712MGG bed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF031GNX, ENCFF449TKZ, ENCFF561HVM, ENCFF962XXR 1995092 ENCODE Processing Pipeline cc7a787ed8815c2522e451f84c49f787 https://www.encodeproject.org/files/ENCFF712MGG/@@download/ENCFF712MGG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF487PCB bigBed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF385CXA 4625351 ENCODE Processing Pipeline e277b4be67a36a2de035015dd57390b2 https://www.encodeproject.org/files/ENCFF487PCB/@@download/ENCFF487PCB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF571JFU bigBed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF489RLJ 3910547 ENCODE Processing Pipeline 61022fe7bb6507f3e6d28c7e0d81b92f https://www.encodeproject.org/files/ENCFF571JFU/@@download/ENCFF571JFU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF335RVX bigBed narrowPeak peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF712MGG 5669351 ENCODE Processing Pipeline f1e0c9166feea422c6ec227c6d48c2a3 https://www.encodeproject.org/files/ENCFF335RVX/@@download/ENCFF335RVX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF772EAX bigWig signal p-value ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF449TKZ, ENCFF561HVM 638082703 ENCODE Processing Pipeline ea905be7bd4cd6f7fe218c840daf8d73 https://www.encodeproject.org/files/ENCFF772EAX/@@download/ENCFF772EAX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF606XXB bigWig signal p-value ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF031GNX, ENCFF962XXR 668309061 ENCODE Processing Pipeline e52309341a83c28c4b581d0f91c57e66 https://www.encodeproject.org/files/ENCFF606XXB/@@download/ENCFF606XXB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF337DML bigWig signal p-value ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF031GNX, ENCFF449TKZ, ENCFF561HVM, ENCFF962XXR 1033459794 ENCODE Processing Pipeline 3262ab1c8afafd064538fd4a7a18088b https://www.encodeproject.org/files/ENCFF337DML/@@download/ENCFF337DML.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF631PET bigWig fold change over control ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF449TKZ, ENCFF561HVM 613412787 ENCODE Processing Pipeline 4bf63902d7bca121702c3c6f6473fb61 https://www.encodeproject.org/files/ENCFF631PET/@@download/ENCFF631PET.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF241GSC bigWig fold change over control ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF031GNX, ENCFF962XXR 627819710 ENCODE Processing Pipeline 1559a200e36313ae3047daaa24f1c38a https://www.encodeproject.org/files/ENCFF241GSC/@@download/ENCFF241GSC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF416UPA bigWig fold change over control ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF031GNX, ENCFF449TKZ, ENCFF561HVM, ENCFF962XXR 1192239457 ENCODE Processing Pipeline 6ec63cc661861391d9bce34f80912175 https://www.encodeproject.org/files/ENCFF416UPA/@@download/ENCFF416UPA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF579HGD bed narrowPeak replicated peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF385CXA, ENCFF489RLJ, ENCFF712MGG 1385936 ENCODE Processing Pipeline c30db4d5083bb45d407235a271bbecab https://www.encodeproject.org/files/ENCFF579HGD/@@download/ENCFF579HGD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF052CTX bigBed narrowPeak replicated peaks ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF579HGD 3121889 ENCODE Processing Pipeline 403cdfdd7db30dd1422a8339e8775acb https://www.encodeproject.org/files/ENCFF052CTX/@@download/ENCFF052CTX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001MLC bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MLF 712711351 Ross Hardison, PennState 754bc2adc51fec6a7228d683c8f6cfbe https://www.encodeproject.org/files/ENCFF001MLC/@@download/ENCFF001MLC.bam mm9 archived low read length, inconsistent platforms, low read depth ENCFF001MLD bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MLG 950918917 Ross Hardison, PennState a61dddd59b2e8daa7f7b160c492bb689 https://www.encodeproject.org/files/ENCFF001MLD/@@download/ENCFF001MLD.bam mm9 archived low read length, inconsistent platforms, low read depth ENCFF001MLE bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEH 718435 Ross Hardison, PennState acb6168aeb3e491d98925cc5d2c8e2fe https://www.encodeproject.org/files/ENCFF001MLE/@@download/ENCFF001MLE.bigBed mm9 archived low read length, inconsistent platforms, low read depth ENCFF001MLF fastq reads ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 607480699 Ross Hardison, PennState 13cb55536563e2f404ef8356ca31096c https://www.encodeproject.org/files/ENCFF001MLF/@@download/ENCFF001MLF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLS/ released low read length, inconsistent platforms, low read depth ENCFF001MLG fastq reads ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 806190305 Ross Hardison, PennState cb106f71623b64b241c3bf8647d34d52 https://www.encodeproject.org/files/ENCFF001MLG/@@download/ENCFF001MLG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLY/ released low read length, inconsistent platforms, inconsistent control read length, low read depth ENCFF001MLH bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEI 529031 Ross Hardison, PennState 2a0c6497186dcc759975019f4d95010d https://www.encodeproject.org/files/ENCFF001MLH/@@download/ENCFF001MLH.bigBed mm9 archived low read length, inconsistent platforms, low read depth ENCFF001MLI bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEJ 622530 Ross Hardison, PennState f28a4f157e773ceb1ddcbe0f6fa359f5 https://www.encodeproject.org/files/ENCFF001MLI/@@download/ENCFF001MLI.bigBed mm9 archived low read length, inconsistent platforms, low read depth ENCFF001MLJ bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2734187727 Ross Hardison, PennState 677d897c5951a513e79af200b3c4dbb9 https://www.encodeproject.org/files/ENCFF001MLJ/@@download/ENCFF001MLJ.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MLL bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 3350621395 Ross Hardison, PennState af9c3b2482eee936cb314cf7ff0317ac https://www.encodeproject.org/files/ENCFF001MLL/@@download/ENCFF001MLL.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from ENCFF001MLN bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 4168038529 Ross Hardison, PennState f8ab794394be26e8a5a6c8ef656110d4 https://www.encodeproject.org/files/ENCFF001MLN/@@download/ENCFF001MLN.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from ENCFF001YEH bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 459472 Ross Hardison, PennState b660915c9181423a917523b5b503bbb7 https://www.encodeproject.org/files/ENCFF001YEH/@@download/ENCFF001YEH.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from ENCFF001YEI bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 325034 Ross Hardison, PennState 507e3ea67e41cf2f31f49dd86dc33fd6 https://www.encodeproject.org/files/ENCFF001YEI/@@download/ENCFF001YEI.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from ENCFF001YEJ bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 368527 Ross Hardison, PennState e9256686dfab3c9b4969b2969c866915 https://www.encodeproject.org/files/ENCFF001YEJ/@@download/ENCFF001YEJ.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from ENCFF572OOM bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 721210553 ENCODE Processing Pipeline 48caea704afd9d07d65699d70cfa16b7 https://www.encodeproject.org/files/ENCFF572OOM/@@download/ENCFF572OOM.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF647VRB bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 542081189 ENCODE Processing Pipeline 1b563fa83cf177b0aa0cb86f4fa85be1 https://www.encodeproject.org/files/ENCFF647VRB/@@download/ENCFF647VRB.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF868BBI bam unfiltered alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 751673017 ENCODE Processing Pipeline e639111bf5ba4d6317c5d7658e0248db https://www.encodeproject.org/files/ENCFF868BBI/@@download/ENCFF868BBI.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF263RYZ bam unfiltered alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 1019973809 ENCODE Processing Pipeline 9af021216b044a93dc01897a553ed6d2 https://www.encodeproject.org/files/ENCFF263RYZ/@@download/ENCFF263RYZ.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF631JAQ bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 691366940 ENCODE Processing Pipeline 6d283ba4053718b61fa7c810d9092c9f https://www.encodeproject.org/files/ENCFF631JAQ/@@download/ENCFF631JAQ.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF995TTU bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 819207950 ENCODE Processing Pipeline d7b1d9c8cfaf4e50e15003b675c43066 https://www.encodeproject.org/files/ENCFF995TTU/@@download/ENCFF995TTU.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF923OBH bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 881440500 ENCODE Processing Pipeline 0b146a2cc2ce851e216837971301cb95 https://www.encodeproject.org/files/ENCFF923OBH/@@download/ENCFF923OBH.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF980OLE bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 692018007 ENCODE Processing Pipeline 41ce349593596cca71049029dd73bf42 https://www.encodeproject.org/files/ENCFF980OLE/@@download/ENCFF980OLE.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF504OHG bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 508922016 ENCODE Processing Pipeline 6fd180e72114944b71776f7449bcdc69 https://www.encodeproject.org/files/ENCFF504OHG/@@download/ENCFF504OHG.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF844EOO bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 914199303 ENCODE Processing Pipeline 28df81cd95383ff7b16f6fa38c5e51c0 https://www.encodeproject.org/files/ENCFF844EOO/@@download/ENCFF844EOO.bigWig mm10 released low read length, inconsistent platforms, low read depth ENCFF173SFG bed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 5985352 ENCODE Processing Pipeline 36ab5b133fba34e67401c4c1017148e1 https://www.encodeproject.org/files/ENCFF173SFG/@@download/ENCFF173SFG.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF800OVO bigBed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF210RNE 13641968 ENCODE Processing Pipeline efd69a49353d077ae78d26d3ed1c77ff https://www.encodeproject.org/files/ENCFF800OVO/@@download/ENCFF800OVO.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF844FUF bed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 5709286 ENCODE Processing Pipeline 052d661edef6cfcab1526bd751eab798 https://www.encodeproject.org/files/ENCFF844FUF/@@download/ENCFF844FUF.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF743VIT bed narrowPeak conservative idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF173SFG, ENCFF210RNE, ENCFF547MET, ENCFF844FUF 431875 ENCODE Processing Pipeline 6963d12936de0a9d174aee666c5ed791 https://www.encodeproject.org/files/ENCFF743VIT/@@download/ENCFF743VIT.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF112IBI bed narrowPeak optimal idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF173SFG, ENCFF210RNE, ENCFF547MET, ENCFF844FUF 433324 ENCODE Processing Pipeline c6fb1e9f83feb30317b951668b09b110 https://www.encodeproject.org/files/ENCFF112IBI/@@download/ENCFF112IBI.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF685XHR bigBed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF173SFG 13267694 ENCODE Processing Pipeline 57f3a60b2184cf28fdf7b260b171abd4 https://www.encodeproject.org/files/ENCFF685XHR/@@download/ENCFF685XHR.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF984EPF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF112IBI 772031 ENCODE Processing Pipeline efabaf3bf3c980cdc9cb445f91d22171 https://www.encodeproject.org/files/ENCFF984EPF/@@download/ENCFF984EPF.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF210RNE bed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 6483099 ENCODE Processing Pipeline 8cf802e0d685ac8710d3af9a7fa54a7d https://www.encodeproject.org/files/ENCFF210RNE/@@download/ENCFF210RNE.bed.gz mm10 released low read length, inconsistent platforms, low read depth ENCFF455CGR bigBed narrowPeak peaks and background as input for IDR ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF844FUF 11336528 ENCODE Processing Pipeline 301177ff56aca04c4acd1b681556c172 https://www.encodeproject.org/files/ENCFF455CGR/@@download/ENCFF455CGR.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF615ZDE bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF743VIT 768536 ENCODE Processing Pipeline c8011e9ecdc6247d6751a8285f11c02e https://www.encodeproject.org/files/ENCFF615ZDE/@@download/ENCFF615ZDE.bigBed mm10 released low read length, inconsistent platforms, low read depth ENCFF001MXY bam alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001MYA 371210116 Michael Snyder, Stanford fef8b468ab3a73104ece1749c13ce37b https://www.encodeproject.org/files/ENCFF001MXY/@@download/ENCFF001MXY.bam mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MXZ bigBed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHE 420787 Michael Snyder, Stanford 0606a706def524a490b73961990a5c5c https://www.encodeproject.org/files/ENCFF001MXZ/@@download/ENCFF001MXZ.bigBed mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYA fastq reads ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 863757331 Michael Snyder, Stanford d1c6f9552c0ff3f112c7120b1227b631 https://www.encodeproject.org/files/ENCFF001MYA/@@download/ENCFF001MYA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NNN/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYC fastq reads ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1571557406 Michael Snyder, Stanford 9a668c7f558362a436551619f9805030 https://www.encodeproject.org/files/ENCFF001MYC/@@download/ENCFF001MYC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NNP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYE bigWig signal ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MXY, ENCFF001MYF 156936673 Michael Snyder, Stanford 0bb16c3509034ef80abd3b4e546ce391 https://www.encodeproject.org/files/ENCFF001MYE/@@download/ENCFF001MYE.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYF bam alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001MYC 586917247 Michael Snyder, Stanford 60f78ac3d44381787131ef85f31b8c14 https://www.encodeproject.org/files/ENCFF001MYF/@@download/ENCFF001MYF.bam mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001YHE bed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MXY, ENCFF001MYF 148706 Michael Snyder, Stanford aca5f387c0f088269fafc7e11d8b435e https://www.encodeproject.org/files/ENCFF001YHE/@@download/ENCFF001YHE.bed.gz mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF536JEH bam unfiltered alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYA, ENCFF018NEO 941364887 ENCODE Processing Pipeline 6822f17548f4d73510654f10b609ae45 https://www.encodeproject.org/files/ENCFF536JEH/@@download/ENCFF536JEH.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF802LZZ bam unfiltered alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYC, ENCFF018NEO 1683043534 ENCODE Processing Pipeline f251f24cc8e4041b0ab05ce49cc059c0 https://www.encodeproject.org/files/ENCFF802LZZ/@@download/ENCFF802LZZ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF981OYN bam alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYA, ENCFF018NEO 485743308 ENCODE Processing Pipeline 0028322736cc25e5b38c87f818337485 https://www.encodeproject.org/files/ENCFF981OYN/@@download/ENCFF981OYN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF029CMW bam alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYC, ENCFF018NEO 830088577 ENCODE Processing Pipeline 1d83ada7e522db73d7707d7f6b98291d https://www.encodeproject.org/files/ENCFF029CMW/@@download/ENCFF029CMW.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF759PJF bed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF029CMW, ENCFF074LDJ, ENCFF966YUS 955599 ENCODE Processing Pipeline f585c4cbb00a5bc832273837b7b573aa https://www.encodeproject.org/files/ENCFF759PJF/@@download/ENCFF759PJF.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF260MOE bed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF074LDJ, ENCFF966YUS, ENCFF981OYN 510012 ENCODE Processing Pipeline 057baa232640b6a124a22839e63bbf7c https://www.encodeproject.org/files/ENCFF260MOE/@@download/ENCFF260MOE.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF167BJT bigBed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF068TWZ 2193390 ENCODE Processing Pipeline c5baf52f629f8c88f92b4366286035de https://www.encodeproject.org/files/ENCFF167BJT/@@download/ENCFF167BJT.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF068TWZ bed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF029CMW, ENCFF074LDJ, ENCFF966YUS, ENCFF981OYN 971745 ENCODE Processing Pipeline f9ecefd2ad51a740cda52fa9e4a701e3 https://www.encodeproject.org/files/ENCFF068TWZ/@@download/ENCFF068TWZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF008FTS bigBed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF759PJF 1793421 ENCODE Processing Pipeline 9688b7569269c89b35740cf23d3f3ce5 https://www.encodeproject.org/files/ENCFF008FTS/@@download/ENCFF008FTS.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF805WPP bigBed narrowPeak peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF260MOE 1033948 ENCODE Processing Pipeline bcf7b94899388bf1877b995236033474 https://www.encodeproject.org/files/ENCFF805WPP/@@download/ENCFF805WPP.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF165ZBD bigWig signal p-value ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF074LDJ, ENCFF966YUS, ENCFF981OYN 438077390 ENCODE Processing Pipeline 00dc85d6721984850fd7827c9c89bd8b https://www.encodeproject.org/files/ENCFF165ZBD/@@download/ENCFF165ZBD.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF169QXZ bigWig signal p-value ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF029CMW, ENCFF074LDJ, ENCFF966YUS 561525227 ENCODE Processing Pipeline 60297205b92b2b3599f28ffab3e97c38 https://www.encodeproject.org/files/ENCFF169QXZ/@@download/ENCFF169QXZ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF419MWX bigWig signal p-value ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF029CMW, ENCFF074LDJ, ENCFF966YUS, ENCFF981OYN 605776665 ENCODE Processing Pipeline dc37d5901d235afd7e243a501ada8d28 https://www.encodeproject.org/files/ENCFF419MWX/@@download/ENCFF419MWX.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF415WEC bigWig fold change over control ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF074LDJ, ENCFF966YUS, ENCFF981OYN 301631713 ENCODE Processing Pipeline 8211a76c10ee7f285412d6dca2d567b2 https://www.encodeproject.org/files/ENCFF415WEC/@@download/ENCFF415WEC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF702RUB bigWig fold change over control ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF029CMW, ENCFF074LDJ, ENCFF966YUS 416772026 ENCODE Processing Pipeline f881ff58ffb75673e36e44c4544c8f2c https://www.encodeproject.org/files/ENCFF702RUB/@@download/ENCFF702RUB.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF325GQU bigWig fold change over control ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF029CMW, ENCFF074LDJ, ENCFF966YUS, ENCFF981OYN 596094735 ENCODE Processing Pipeline 52c819d9e384d57e015c8ce5293902e8 https://www.encodeproject.org/files/ENCFF325GQU/@@download/ENCFF325GQU.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF635QHU bigBed narrowPeak replicated peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF090UKL 517679 ENCODE Processing Pipeline e6aec6b7aa26c0d3a393d6367d78ee9a https://www.encodeproject.org/files/ENCFF635QHU/@@download/ENCFF635QHU.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF090UKL bed narrowPeak replicated peaks ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF068TWZ, ENCFF260MOE, ENCFF759PJF 166804 ENCODE Processing Pipeline 10224b8aa9a389626d9b3528a99db181 https://www.encodeproject.org/files/ENCFF090UKL/@@download/ENCFF090UKL.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001KPO bam alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KQA 438074259 Bing Ren, UCSD 9efa1cd268d69ec569e3500125932b77 https://www.encodeproject.org/files/ENCFF001KPO/@@download/ENCFF001KPO.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KPP bam alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KQB 518642070 Bing Ren, UCSD 283143968f8d7adfd1a88343afba919c https://www.encodeproject.org/files/ENCFF001KPP/@@download/ENCFF001KPP.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KPQ bigBed broadPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYI 375741 Bing Ren, UCSD ac0143438d0f6e84b2cc524cf1d52e0c https://www.encodeproject.org/files/ENCFF001KPQ/@@download/ENCFF001KPQ.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KPU bigWig signal ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KPO, ENCFF001KPP 16559920 Bing Ren, UCSD 05df0a27c5e5c1f4c32c8a1f74493f0d https://www.encodeproject.org/files/ENCFF001KPU/@@download/ENCFF001KPU.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KQA fastq reads ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 465774712 Bing Ren, UCSD 9acaedd19e475531096471090bfbe9e1 https://www.encodeproject.org/files/ENCFF001KQA/@@download/ENCFF001KQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KQB fastq reads ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 556280424 Bing Ren, UCSD 4ca222de2ac8dff849c325aaa84ad1b4 https://www.encodeproject.org/files/ENCFF001KQB/@@download/ENCFF001KQB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001XYI bed broadPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KPO, ENCFF001KPP 260261 Bing Ren, UCSD bfc6a6d9b4994d4504fb144959742680 https://www.encodeproject.org/files/ENCFF001XYI/@@download/ENCFF001XYI.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF385IFX bam unfiltered alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQB, ENCFF018NEO 535046512 ENCODE Processing Pipeline 269f6ce0aafdaa45b27dfcbc8f969d6e https://www.encodeproject.org/files/ENCFF385IFX/@@download/ENCFF385IFX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF213EVS bam unfiltered alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQA, ENCFF018NEO 452841803 ENCODE Processing Pipeline a83fda76f7942c0dee037a539c1f426a https://www.encodeproject.org/files/ENCFF213EVS/@@download/ENCFF213EVS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF452KBZ bam alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQA, ENCFF018NEO 321374852 ENCODE Processing Pipeline 7a63ca5e526f909b4f6841ffdd9ac5b3 https://www.encodeproject.org/files/ENCFF452KBZ/@@download/ENCFF452KBZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF406NKS bam alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQB, ENCFF018NEO 369524293 ENCODE Processing Pipeline 05d24da3a593a3ef750f9f3f7d985d35 https://www.encodeproject.org/files/ENCFF406NKS/@@download/ENCFF406NKS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF421QQP bed narrowPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF452KBZ, ENCFF780TFB 758777 ENCODE Processing Pipeline 73264e4ad941653ac791d2c869316d42 https://www.encodeproject.org/files/ENCFF421QQP/@@download/ENCFF421QQP.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF852VAU bed narrowPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF406NKS, ENCFF780TFB 704318 ENCODE Processing Pipeline 45631b428ecd1ca1ea587a6cc732726b https://www.encodeproject.org/files/ENCFF852VAU/@@download/ENCFF852VAU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF624SUF bigBed narrowPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF421QQP 2197248 ENCODE Processing Pipeline 409ae56b3bbe269e9b8acaaff0f27ffd https://www.encodeproject.org/files/ENCFF624SUF/@@download/ENCFF624SUF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF576GEV bigBed narrowPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF852VAU 2082834 ENCODE Processing Pipeline 895cc712e5d419c2778aec35d30dd1a3 https://www.encodeproject.org/files/ENCFF576GEV/@@download/ENCFF576GEV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF186APQ bed narrowPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF406NKS, ENCFF452KBZ, ENCFF780TFB 787761 ENCODE Processing Pipeline d46aa1b114bdce27b59fb746231dfb7d https://www.encodeproject.org/files/ENCFF186APQ/@@download/ENCFF186APQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF915OGG bigWig signal p-value ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF452KBZ, ENCFF780TFB 202901282 ENCODE Processing Pipeline 08b284b9e09713a7cb23648be522b936 https://www.encodeproject.org/files/ENCFF915OGG/@@download/ENCFF915OGG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF472WDV bigWig signal p-value ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF406NKS, ENCFF780TFB 166232694 ENCODE Processing Pipeline bb29b5cf2aed024827706ac44289d13f https://www.encodeproject.org/files/ENCFF472WDV/@@download/ENCFF472WDV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF487AOY bigBed narrowPeak peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF186APQ 2210364 ENCODE Processing Pipeline 3e1d3b9e2b40e8e4c1e1f3b61695e352 https://www.encodeproject.org/files/ENCFF487AOY/@@download/ENCFF487AOY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF335CVP bigWig signal p-value ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF406NKS, ENCFF452KBZ, ENCFF780TFB 254782248 ENCODE Processing Pipeline 8320871abd644f5abf212c29838d9b03 https://www.encodeproject.org/files/ENCFF335CVP/@@download/ENCFF335CVP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF132TWB bigWig fold change over control ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF342BIA, ENCFF452KBZ, ENCFF780TFB 103443139 ENCODE Processing Pipeline a5f93c6ad3c3683fe535f41ce24305cb https://www.encodeproject.org/files/ENCFF132TWB/@@download/ENCFF132TWB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF496UKK bigWig fold change over control ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF342BIA, ENCFF406NKS, ENCFF452KBZ, ENCFF780TFB 169881685 ENCODE Processing Pipeline b84b69247ef4c5425548692a855eaa99 https://www.encodeproject.org/files/ENCFF496UKK/@@download/ENCFF496UKK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF999ETR bigWig fold change over control ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF406NKS, ENCFF780TFB 99891349 ENCODE Processing Pipeline 421ad34984ac90e402a4952fbea4901e https://www.encodeproject.org/files/ENCFF999ETR/@@download/ENCFF999ETR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF302BKK bed narrowPeak replicated peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF186APQ, ENCFF421QQP, ENCFF852VAU 978632 ENCODE Processing Pipeline 5881c138c393ab744f81ff3572a275bf https://www.encodeproject.org/files/ENCFF302BKK/@@download/ENCFF302BKK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF545VDO bigBed narrowPeak replicated peaks ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF302BKK 2019647 ENCODE Processing Pipeline 9facdb4b70c91ecee08764a595366f26 https://www.encodeproject.org/files/ENCFF545VDO/@@download/ENCFF545VDO.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF017RTP fastq reads ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3724845365 Bing Ren, UCSD 45571b08fd89b72ecc4986a7e4269812 SRA:SRR3652136 https://www.encodeproject.org/files/ENCFF017RTP/@@download/ENCFF017RTP.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released inconsistent platforms ENCFF943EUQ fastq reads ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3580517097 Bing Ren, UCSD 2d939154957328300f83f881d2e8e8f1 SRA:SRR3652135 https://www.encodeproject.org/files/ENCFF943EUQ/@@download/ENCFF943EUQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released inconsistent platforms ENCFF265WOP bam alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF017RTP, ENCFF806TVZ 3214940692 ENCODE Processing Pipeline 8f3ea2558ed3517ae15dbff20c40a8e6 https://www.encodeproject.org/files/ENCFF265WOP/@@download/ENCFF265WOP.bam mm10-minimal archived inconsistent platforms ENCFF785UBI bam alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF943EUQ 3135525498 ENCODE Processing Pipeline 57cbb45f1617bfff00d0202670c2a669 https://www.encodeproject.org/files/ENCFF785UBI/@@download/ENCFF785UBI.bam mm10-minimal archived inconsistent platforms ENCFF257XWZ bed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF785UBI, ENCFF834ZUW 2712742 ENCODE Processing Pipeline 47cf12fe959952978257b205462713e2 https://www.encodeproject.org/files/ENCFF257XWZ/@@download/ENCFF257XWZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF101MDC bigBed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF865HIQ 7333665 ENCODE Processing Pipeline f2ccb3f2594bdad78619b84f661b05a1 https://www.encodeproject.org/files/ENCFF101MDC/@@download/ENCFF101MDC.bigBed mm10-minimal archived inconsistent platforms ENCFF371HTA bigBed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF257XWZ 7565759 ENCODE Processing Pipeline bc68b55aea44a989e8a298e3768e635d https://www.encodeproject.org/files/ENCFF371HTA/@@download/ENCFF371HTA.bigBed mm10-minimal archived inconsistent platforms ENCFF537UBF bigWig signal p-value ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF265WOP, ENCFF326YEF, ENCFF834ZUW 1164693449 ENCODE Processing Pipeline 87b99bb9b29dda752a429a02be8fba83 https://www.encodeproject.org/files/ENCFF537UBF/@@download/ENCFF537UBF.bigWig mm10-minimal archived inconsistent platforms ENCFF082AZL bed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF265WOP, ENCFF326YEF, ENCFF834ZUW 2886156 ENCODE Processing Pipeline 0dfce7a5f4ce758ef5299c84299b7e51 https://www.encodeproject.org/files/ENCFF082AZL/@@download/ENCFF082AZL.bed.gz mm10-minimal archived inconsistent platforms ENCFF865HIQ bed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF265WOP, ENCFF326YEF, ENCFF785UBI, ENCFF834ZUW 2633405 ENCODE Processing Pipeline 9c5577a76c122d6284a82c9d13bfeb82 https://www.encodeproject.org/files/ENCFF865HIQ/@@download/ENCFF865HIQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF367RGY bigBed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082AZL 8019731 ENCODE Processing Pipeline 02d6f09265320af2ad1bf21e9684d3de https://www.encodeproject.org/files/ENCFF367RGY/@@download/ENCFF367RGY.bigBed mm10-minimal archived inconsistent platforms ENCFF765AJO bigWig signal p-value ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF785UBI, ENCFF834ZUW 1107137752 ENCODE Processing Pipeline 9d70d60bbe4b6225816d370d6258fd67 https://www.encodeproject.org/files/ENCFF765AJO/@@download/ENCFF765AJO.bigWig mm10-minimal archived inconsistent platforms ENCFF185ZFF bigWig signal p-value ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF265WOP, ENCFF326YEF, ENCFF785UBI, ENCFF834ZUW 1559724989 ENCODE Processing Pipeline 66b402380683adfed05f4e7820a8fa60 https://www.encodeproject.org/files/ENCFF185ZFF/@@download/ENCFF185ZFF.bigWig mm10-minimal archived inconsistent platforms ENCFF985THB bigWig fold change over control ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF265WOP, ENCFF326YEF, ENCFF834ZUW 1241434281 ENCODE Processing Pipeline 5255e1692e52861f04fe0a735525bd42 https://www.encodeproject.org/files/ENCFF985THB/@@download/ENCFF985THB.bigWig mm10-minimal archived inconsistent platforms ENCFF922DIT bigWig fold change over control ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF785UBI, ENCFF834ZUW 1251565422 ENCODE Processing Pipeline 23e383b157e92256c6620d65d42e8241 https://www.encodeproject.org/files/ENCFF922DIT/@@download/ENCFF922DIT.bigWig mm10-minimal archived inconsistent platforms ENCFF007LQQ bigWig fold change over control ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF265WOP, ENCFF326YEF, ENCFF785UBI, ENCFF834ZUW 1804203543 ENCODE Processing Pipeline 7ecfbabf1f3529bd36c6d1a5ef0deb83 https://www.encodeproject.org/files/ENCFF007LQQ/@@download/ENCFF007LQQ.bigWig mm10-minimal archived inconsistent platforms ENCFF536TMS bigBed narrowPeak replicated peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF968MDL 5756686 ENCODE Processing Pipeline 1d682e6494c3c91c7e6a0bcac21c2f07 https://www.encodeproject.org/files/ENCFF536TMS/@@download/ENCFF536TMS.bigBed mm10-minimal archived inconsistent platforms ENCFF968MDL bed narrowPeak replicated peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082AZL, ENCFF257XWZ, ENCFF865HIQ 2779815 ENCODE Processing Pipeline df391eff2d7b2135acb038e21f59fb6c https://www.encodeproject.org/files/ENCFF968MDL/@@download/ENCFF968MDL.bed.gz mm10-minimal archived inconsistent platforms ENCFF583IMF bam unfiltered alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF017RTP, ENCFF018NEO 4418587428 ENCODE Processing Pipeline 8f32ef7cd7ebb64c103798ce60dfb881 https://www.encodeproject.org/files/ENCFF583IMF/@@download/ENCFF583IMF.bam mm10 released inconsistent platforms ENCFF889CXW bam unfiltered alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF943EUQ 4261684702 ENCODE Processing Pipeline 845c6d41c3dafb5b2e78ce7f07527ce0 https://www.encodeproject.org/files/ENCFF889CXW/@@download/ENCFF889CXW.bam mm10 released inconsistent platforms ENCFF526EGV bam alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF017RTP, ENCFF018NEO 3214314602 ENCODE Processing Pipeline e06b089bc2304728e77cfeb53335e764 https://www.encodeproject.org/files/ENCFF526EGV/@@download/ENCFF526EGV.bam mm10 released inconsistent platforms ENCFF190ZOW bam alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF943EUQ 3134915664 ENCODE Processing Pipeline a5d65b65511402dc7c09d04ea1ae8d40 https://www.encodeproject.org/files/ENCFF190ZOW/@@download/ENCFF190ZOW.bam mm10 released inconsistent platforms ENCFF551AXC bed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF526EGV, ENCFF643WUI, ENCFF916TFR 2689127 ENCODE Processing Pipeline 616992882ee23974e0e273847615e92d https://www.encodeproject.org/files/ENCFF551AXC/@@download/ENCFF551AXC.bed.gz mm10 released inconsistent platforms ENCFF280EUB bed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF190ZOW, ENCFF916TFR 2178737 ENCODE Processing Pipeline 7c1ab934ad3cd9bd92477f1e6b671f49 https://www.encodeproject.org/files/ENCFF280EUB/@@download/ENCFF280EUB.bed.gz mm10 released inconsistent platforms ENCFF555EBD bed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF190ZOW, ENCFF526EGV, ENCFF643WUI, ENCFF916TFR 2953734 ENCODE Processing Pipeline 7b42c2f59cbd10f05f178dbd37b1871e https://www.encodeproject.org/files/ENCFF555EBD/@@download/ENCFF555EBD.bed.gz mm10 released inconsistent platforms ENCFF421SZS bigBed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF551AXC 7514762 ENCODE Processing Pipeline 01697c3b0febc5e58d9e3735b5344cb8 https://www.encodeproject.org/files/ENCFF421SZS/@@download/ENCFF421SZS.bigBed mm10 released inconsistent platforms ENCFF475DZG bigBed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF280EUB 6132170 ENCODE Processing Pipeline bc2ce99bc18764a32a8cd651a2834504 https://www.encodeproject.org/files/ENCFF475DZG/@@download/ENCFF475DZG.bigBed mm10 released inconsistent platforms ENCFF254BXJ bigBed narrowPeak peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF555EBD 8159480 ENCODE Processing Pipeline 66556dd294de4f22fd9259521b66b202 https://www.encodeproject.org/files/ENCFF254BXJ/@@download/ENCFF254BXJ.bigBed mm10 released inconsistent platforms ENCFF903HNE bigWig signal p-value ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF526EGV, ENCFF643WUI, ENCFF916TFR 999689054 ENCODE Processing Pipeline 017b79dd021be949abbfa1986246ccf2 https://www.encodeproject.org/files/ENCFF903HNE/@@download/ENCFF903HNE.bigWig mm10 released inconsistent platforms ENCFF852DFQ bigWig signal p-value ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF190ZOW, ENCFF916TFR 928303330 ENCODE Processing Pipeline cf386d5a46785b93257dc686b4959e6e https://www.encodeproject.org/files/ENCFF852DFQ/@@download/ENCFF852DFQ.bigWig mm10 released inconsistent platforms ENCFF763NWK bigWig signal p-value ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF190ZOW, ENCFF526EGV, ENCFF643WUI, ENCFF916TFR 1697864747 ENCODE Processing Pipeline 159065294e77f20556bba1e67a935215 https://www.encodeproject.org/files/ENCFF763NWK/@@download/ENCFF763NWK.bigWig mm10 released inconsistent platforms ENCFF828NOP bigWig fold change over control ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF526EGV, ENCFF643WUI, ENCFF916TFR 1294214531 ENCODE Processing Pipeline ee32c8da46b0ef532a15e3e3aab42d99 https://www.encodeproject.org/files/ENCFF828NOP/@@download/ENCFF828NOP.bigWig mm10 released inconsistent platforms ENCFF639MSS bigWig fold change over control ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF190ZOW, ENCFF916TFR 1016910477 ENCODE Processing Pipeline 597f243b69ddb07dd294b2a783bb9a08 https://www.encodeproject.org/files/ENCFF639MSS/@@download/ENCFF639MSS.bigWig mm10 released inconsistent platforms ENCFF833YTL bigWig fold change over control ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF190ZOW, ENCFF526EGV, ENCFF643WUI, ENCFF916TFR 1841459246 ENCODE Processing Pipeline f4be2a338093c0261781bf126aeba026 https://www.encodeproject.org/files/ENCFF833YTL/@@download/ENCFF833YTL.bigWig mm10 released inconsistent platforms ENCFF568RKB bed narrowPeak replicated peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF280EUB, ENCFF551AXC, ENCFF555EBD 2636531 ENCODE Processing Pipeline e6616855f97c8bc05ee0a72610a3925b https://www.encodeproject.org/files/ENCFF568RKB/@@download/ENCFF568RKB.bed.gz mm10 released inconsistent platforms ENCFF859RLS bigBed narrowPeak replicated peaks ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF568RKB 5418657 ENCODE Processing Pipeline 9093c4e1821326b35f2e80c878aa197e https://www.encodeproject.org/files/ENCFF859RLS/@@download/ENCFF859RLS.bigBed mm10 released inconsistent platforms ENCFF180FSZ bam alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF202SUQ, ENCFF209PAZ, ENCFF806TVZ 2752258285 ENCODE Processing Pipeline a38f920755d30961673529054f657167 https://www.encodeproject.org/files/ENCFF180FSZ/@@download/ENCFF180FSZ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF101LJZ fastq reads ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2944979835 Bing Ren, UCSD d873cb958f2598bd17e1331915e68598 SRA:SRR3652084 https://www.encodeproject.org/files/ENCFF101LJZ/@@download/ENCFF101LJZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF209PAZ fastq reads ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2419664696 Bing Ren, UCSD 64d262f6e9dea8a5fa13f7b1a96e430a SRA:SRR3652082 https://www.encodeproject.org/files/ENCFF209PAZ/@@download/ENCFF209PAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF202SUQ fastq reads ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 676705779 Bing Ren, UCSD 640fba57793e28a849921983d51f390e SRA:SRR3652083 https://www.encodeproject.org/files/ENCFF202SUQ/@@download/ENCFF202SUQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF515ALU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF110VQJ bam alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF101LJZ, ENCFF806TVZ 2707509730 ENCODE Processing Pipeline aaf63d84e777d5799cceccef4020a825 https://www.encodeproject.org/files/ENCFF110VQJ/@@download/ENCFF110VQJ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF246IUZ bed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF180FSZ, ENCFF269MZC 3551492 ENCODE Processing Pipeline ff9c9c8669b521480fe040301f7c3d3f https://www.encodeproject.org/files/ENCFF246IUZ/@@download/ENCFF246IUZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF691TVM bigBed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF596JJP 6901863 ENCODE Processing Pipeline 0cde86a67796fe5303bb39d8999a01fa https://www.encodeproject.org/files/ENCFF691TVM/@@download/ENCFF691TVM.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF635XOV bigBed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF218OKX 8818929 ENCODE Processing Pipeline 9629bff7b2e09fdf449e945998857686 https://www.encodeproject.org/files/ENCFF635XOV/@@download/ENCFF635XOV.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF550ORO bigBed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF246IUZ 7028347 ENCODE Processing Pipeline 3653e0cd5fb5a2481147315e8f3a5e51 https://www.encodeproject.org/files/ENCFF550ORO/@@download/ENCFF550ORO.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF218OKX bed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF110VQJ, ENCFF170XAR, ENCFF180FSZ, ENCFF269MZC 3414046 ENCODE Processing Pipeline 8c5604fbc3f671e50eed4b74d620f925 https://www.encodeproject.org/files/ENCFF218OKX/@@download/ENCFF218OKX.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF596JJP bed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF110VQJ, ENCFF170XAR, ENCFF269MZC 3511393 ENCODE Processing Pipeline 778dcf63f3cc1a1160e3446cf4a89b4d https://www.encodeproject.org/files/ENCFF596JJP/@@download/ENCFF596JJP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF899APB bigWig signal p-value ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF110VQJ, ENCFF170XAR, ENCFF269MZC 724397135 ENCODE Processing Pipeline 6d5b434292b644ede4164c11dbdc50db https://www.encodeproject.org/files/ENCFF899APB/@@download/ENCFF899APB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF561BMN bigWig signal p-value ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF180FSZ, ENCFF269MZC 747183958 ENCODE Processing Pipeline 2fe068f321cd7c91863b682a8f03ecbb https://www.encodeproject.org/files/ENCFF561BMN/@@download/ENCFF561BMN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF115SRM bigWig signal p-value ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF110VQJ, ENCFF170XAR, ENCFF180FSZ, ENCFF269MZC 1151366297 ENCODE Processing Pipeline e08a2c6177ea36e46f47e53067d409b8 https://www.encodeproject.org/files/ENCFF115SRM/@@download/ENCFF115SRM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF239TGB bigWig fold change over control ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF110VQJ, ENCFF170XAR, ENCFF269MZC 906654485 ENCODE Processing Pipeline c740905c1847e82cafa9d675f471f264 https://www.encodeproject.org/files/ENCFF239TGB/@@download/ENCFF239TGB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF910DCK bigWig fold change over control ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF180FSZ, ENCFF269MZC 929610439 ENCODE Processing Pipeline d191627c8b0ec813e9661ae295cb1a1c https://www.encodeproject.org/files/ENCFF910DCK/@@download/ENCFF910DCK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF282LRW bigWig fold change over control ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF110VQJ, ENCFF170XAR, ENCFF180FSZ, ENCFF269MZC 1485493330 ENCODE Processing Pipeline c0c33fa09ed2a4697b92e43a92767b40 https://www.encodeproject.org/files/ENCFF282LRW/@@download/ENCFF282LRW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF993FIB bed narrowPeak replicated peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF218OKX, ENCFF246IUZ, ENCFF596JJP 3379741 ENCODE Processing Pipeline 3268582dcd4a512664644144b61bfdbc https://www.encodeproject.org/files/ENCFF993FIB/@@download/ENCFF993FIB.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF807GDS bigBed narrowPeak replicated peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF993FIB 7126156 ENCODE Processing Pipeline 7a29ab8e9875cc299c6c04ecd4b7acfc https://www.encodeproject.org/files/ENCFF807GDS/@@download/ENCFF807GDS.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF700FGN bam unfiltered alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF202SUQ, ENCFF209PAZ 3652664722 ENCODE Processing Pipeline c4997c382ee79ebf67ac0519e7460ce3 https://www.encodeproject.org/files/ENCFF700FGN/@@download/ENCFF700FGN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF074MHA bam unfiltered alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF101LJZ 3494631578 ENCODE Processing Pipeline a72aedbd1cb4115552200b48f2eacb86 https://www.encodeproject.org/files/ENCFF074MHA/@@download/ENCFF074MHA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF256EFQ bam alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF202SUQ, ENCFF209PAZ 2751721095 ENCODE Processing Pipeline 82c6f70c9190456e4fb10cf29e0bb3bc https://www.encodeproject.org/files/ENCFF256EFQ/@@download/ENCFF256EFQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF937SNJ bam alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF101LJZ 2707013622 ENCODE Processing Pipeline f726b150f20f0bafa57376d12dfdfa3d https://www.encodeproject.org/files/ENCFF937SNJ/@@download/ENCFF937SNJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF227ALY bed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF876QJH, ENCFF937SNJ 3377244 ENCODE Processing Pipeline 66b0e57ee59bc5359c4625a28ff126c3 https://www.encodeproject.org/files/ENCFF227ALY/@@download/ENCFF227ALY.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF503IDV bed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF256EFQ, ENCFF876QJH 3666672 ENCODE Processing Pipeline 172246918ad8334732ffff4c0f788caa https://www.encodeproject.org/files/ENCFF503IDV/@@download/ENCFF503IDV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF992QBE bed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF200JPL, ENCFF256EFQ, ENCFF876QJH, ENCFF937SNJ 4015411 ENCODE Processing Pipeline a82feff81eb00b32621221630846fb97 https://www.encodeproject.org/files/ENCFF992QBE/@@download/ENCFF992QBE.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF921IQG bigBed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF227ALY 6713325 ENCODE Processing Pipeline f9e89f318f0250a1c723c90c7f4c0c86 https://www.encodeproject.org/files/ENCFF921IQG/@@download/ENCFF921IQG.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF068GMD bigBed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF503IDV 9434400 ENCODE Processing Pipeline 6e91c06a19fdad6e71c3c58d2dcb4cc0 https://www.encodeproject.org/files/ENCFF068GMD/@@download/ENCFF068GMD.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF980PMI bigBed narrowPeak peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF992QBE 10278227 ENCODE Processing Pipeline 1e3fc016b1fcd938253420558a747f8a https://www.encodeproject.org/files/ENCFF980PMI/@@download/ENCFF980PMI.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF157ZRY bigWig signal p-value ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF876QJH, ENCFF937SNJ 720408592 ENCODE Processing Pipeline ce2b86d78d9b44e8617e9ef38aec460c https://www.encodeproject.org/files/ENCFF157ZRY/@@download/ENCFF157ZRY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF571SXA bigWig signal p-value ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF256EFQ, ENCFF876QJH 1072183144 ENCODE Processing Pipeline bdda8e69f5183ff901b832896b79b40d https://www.encodeproject.org/files/ENCFF571SXA/@@download/ENCFF571SXA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF886HIE bigWig signal p-value ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF200JPL, ENCFF256EFQ, ENCFF876QJH, ENCFF937SNJ 1537159895 ENCODE Processing Pipeline f7a252e716bf3aa0a205a19506f67f8a https://www.encodeproject.org/files/ENCFF886HIE/@@download/ENCFF886HIE.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF528VXD bigWig fold change over control ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF876QJH, ENCFF937SNJ 842171054 ENCODE Processing Pipeline 0508d8b84e255961d70fbb8ee27d3da3 https://www.encodeproject.org/files/ENCFF528VXD/@@download/ENCFF528VXD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF733VZY bigWig fold change over control ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF256EFQ, ENCFF876QJH 1061818028 ENCODE Processing Pipeline 01128d773c1b28b2080cc03a9a9def32 https://www.encodeproject.org/files/ENCFF733VZY/@@download/ENCFF733VZY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF255RIU bigWig fold change over control ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF200JPL, ENCFF256EFQ, ENCFF876QJH, ENCFF937SNJ 1592605316 ENCODE Processing Pipeline a7ad7e565088421ba9cffa4290896fdb https://www.encodeproject.org/files/ENCFF255RIU/@@download/ENCFF255RIU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF320PIN bed narrowPeak replicated peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF227ALY, ENCFF503IDV, ENCFF992QBE 3279060 ENCODE Processing Pipeline 13a27fcfba0db7614fcafa4767611fea https://www.encodeproject.org/files/ENCFF320PIN/@@download/ENCFF320PIN.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF964KFP bigBed narrowPeak replicated peaks ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF320PIN 6734736 ENCODE Processing Pipeline 10645c3d31396d9fdbfce3f31ddeca8e https://www.encodeproject.org/files/ENCFF964KFP/@@download/ENCFF964KFP.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002ETG fastq reads ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 791137910 Bing Ren, UCSD ba1c0f2faffdadc1d95fe419313dc931 SRA:SRR3653122 https://www.encodeproject.org/files/ENCFF002ETG/@@download/ENCFF002ETG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXU/ released low read length, low read depth ENCFF002ETH fastq reads ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 841019022 Bing Ren, UCSD e077c476395bd5cb9fd7dddc828540b1 SRA:SRR3653123 https://www.encodeproject.org/files/ENCFF002ETH/@@download/ENCFF002ETH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXS/ released low read length, low read depth ENCFF225VVC bam alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETH, ENCFF806TVZ 711334699 ENCODE Processing Pipeline 50d30996ececdd9ffd858f47e7518b9d https://www.encodeproject.org/files/ENCFF225VVC/@@download/ENCFF225VVC.bam mm10-minimal archived low read length, low read depth ENCFF348IMN bam alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETG, ENCFF806TVZ 646598065 ENCODE Processing Pipeline dac25c2b38b688f910034a6ab0eafa40 https://www.encodeproject.org/files/ENCFF348IMN/@@download/ENCFF348IMN.bam mm10-minimal archived low read length, low read depth ENCFF922DPO bed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF225VVC, ENCFF348IMN, ENCFF532IQU, ENCFF540VMM 1031217 ENCODE Processing Pipeline 75948c835b77866fb3bacbacde70856a https://www.encodeproject.org/files/ENCFF922DPO/@@download/ENCFF922DPO.bed.gz mm10-minimal archived low read length, low read depth ENCFF998RKB bigBed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF092HQG 3024066 ENCODE Processing Pipeline d90dda0996adcf26ca052a039aea232e https://www.encodeproject.org/files/ENCFF998RKB/@@download/ENCFF998RKB.bigBed mm10-minimal archived low read length, low read depth ENCFF200NNL bed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF225VVC, ENCFF532IQU, ENCFF540VMM 915598 ENCODE Processing Pipeline 4c4a7c58aa7388716f013645f5e36042 https://www.encodeproject.org/files/ENCFF200NNL/@@download/ENCFF200NNL.bed.gz mm10-minimal archived low read length, low read depth ENCFF092HQG bed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF348IMN, ENCFF532IQU, ENCFF540VMM 977752 ENCODE Processing Pipeline 42698cc912011c79420e30b3481059ae https://www.encodeproject.org/files/ENCFF092HQG/@@download/ENCFF092HQG.bed.gz mm10-minimal archived low read length, low read depth ENCFF927WUN bigWig signal p-value ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF348IMN, ENCFF532IQU, ENCFF540VMM 487088592 ENCODE Processing Pipeline b831cd5541f1f0230eeda42eb2baa48d https://www.encodeproject.org/files/ENCFF927WUN/@@download/ENCFF927WUN.bigWig mm10-minimal archived low read length, low read depth ENCFF425VWG bigBed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF200NNL 2850293 ENCODE Processing Pipeline 9c4227142ac9bd26f461a98364aa156e https://www.encodeproject.org/files/ENCFF425VWG/@@download/ENCFF425VWG.bigBed mm10-minimal archived low read length, low read depth ENCFF357FWZ bigWig signal p-value ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF225VVC, ENCFF532IQU, ENCFF540VMM 524308748 ENCODE Processing Pipeline d207701d204a239de836296cae33660f https://www.encodeproject.org/files/ENCFF357FWZ/@@download/ENCFF357FWZ.bigWig mm10-minimal archived low read length, low read depth ENCFF761SUZ bigWig signal p-value ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF225VVC, ENCFF348IMN, ENCFF532IQU, ENCFF540VMM 534879564 ENCODE Processing Pipeline 10619c1001477c31f959ac3c56fca31d https://www.encodeproject.org/files/ENCFF761SUZ/@@download/ENCFF761SUZ.bigWig mm10-minimal archived low read length, low read depth ENCFF391ZTU bigBed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF922DPO 3141288 ENCODE Processing Pipeline f06ac32b9af576b502a94741966f9455 https://www.encodeproject.org/files/ENCFF391ZTU/@@download/ENCFF391ZTU.bigBed mm10-minimal archived low read length, low read depth ENCFF514LHP bigWig fold change over control ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF225VVC, ENCFF532IQU, ENCFF540VMM 400802095 ENCODE Processing Pipeline be104a15e3ee35b1bc1ab00e17fe3d3b https://www.encodeproject.org/files/ENCFF514LHP/@@download/ENCFF514LHP.bigWig mm10-minimal archived low read length, low read depth ENCFF709GKI bigWig fold change over control ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF348IMN, ENCFF532IQU, ENCFF540VMM 358727676 ENCODE Processing Pipeline f9af6de7f4a85d3c4ee19273057fbcaf https://www.encodeproject.org/files/ENCFF709GKI/@@download/ENCFF709GKI.bigWig mm10-minimal archived low read length, low read depth ENCFF206KNX bigWig fold change over control ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF225VVC, ENCFF348IMN, ENCFF532IQU, ENCFF540VMM 608423612 ENCODE Processing Pipeline 59e10de30594c1982396120a8ad65ece https://www.encodeproject.org/files/ENCFF206KNX/@@download/ENCFF206KNX.bigWig mm10-minimal archived low read length, low read depth ENCFF724OKA bed narrowPeak replicated peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF092HQG, ENCFF200NNL, ENCFF922DPO 1114951 ENCODE Processing Pipeline 148a9c61b971aef17c0f8829e6c217fc https://www.encodeproject.org/files/ENCFF724OKA/@@download/ENCFF724OKA.bed.gz mm10-minimal archived low read length, low read depth ENCFF586MKJ bigBed narrowPeak replicated peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF724OKA 2462999 ENCODE Processing Pipeline 37e688d7301a66bfb0cae4ce4ed5b258 https://www.encodeproject.org/files/ENCFF586MKJ/@@download/ENCFF586MKJ.bigBed mm10-minimal archived low read length, low read depth ENCFF905NAQ bam unfiltered alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETH, ENCFF018NEO 1022289776 ENCODE Processing Pipeline 7e9193ce54816eb95aec2eea9f462639 https://www.encodeproject.org/files/ENCFF905NAQ/@@download/ENCFF905NAQ.bam mm10 released low read length, low read depth ENCFF777PZH bam unfiltered alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETG, ENCFF018NEO 945785610 ENCODE Processing Pipeline d4fe0b2bc1e5c8487375f6c2aea11f8b https://www.encodeproject.org/files/ENCFF777PZH/@@download/ENCFF777PZH.bam mm10 released low read length, low read depth ENCFF976AWB bam alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETH, ENCFF018NEO 711250816 ENCODE Processing Pipeline a43a27f947369d9b672a91eb0b5195b3 https://www.encodeproject.org/files/ENCFF976AWB/@@download/ENCFF976AWB.bam mm10 released low read length, low read depth ENCFF931ASG bam alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETG, ENCFF018NEO 646514433 ENCODE Processing Pipeline 20d6935f507319ab13f2922b8b03a68a https://www.encodeproject.org/files/ENCFF931ASG/@@download/ENCFF931ASG.bam mm10 released low read length, low read depth ENCFF572QPG bed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF742VJP, ENCFF976AWB 916007 ENCODE Processing Pipeline a00cee357ce20ee913191f4750083574 https://www.encodeproject.org/files/ENCFF572QPG/@@download/ENCFF572QPG.bed.gz mm10 released low read length, low read depth ENCFF675HTE bed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF742VJP, ENCFF931ASG 966139 ENCODE Processing Pipeline 0b33a42fcaee663fa25c6edd1cc3f352 https://www.encodeproject.org/files/ENCFF675HTE/@@download/ENCFF675HTE.bed.gz mm10 released low read length, low read depth ENCFF684ICA bed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF394IRO, ENCFF742VJP, ENCFF931ASG, ENCFF976AWB 1038148 ENCODE Processing Pipeline 32cefd8937c72ee706d6122f34f76059 https://www.encodeproject.org/files/ENCFF684ICA/@@download/ENCFF684ICA.bed.gz mm10 released low read length, low read depth ENCFF528OQO bigBed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF572QPG 2851700 ENCODE Processing Pipeline 362a16ee66dd40ecab4c0ed6b07cccc4 https://www.encodeproject.org/files/ENCFF528OQO/@@download/ENCFF528OQO.bigBed mm10 released low read length, low read depth ENCFF048XUB bigBed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF675HTE 2996015 ENCODE Processing Pipeline 77c2a585035455e5708c3627c1c6b6f9 https://www.encodeproject.org/files/ENCFF048XUB/@@download/ENCFF048XUB.bigBed mm10 released low read length, low read depth ENCFF928BSV bigBed narrowPeak peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF684ICA 3158544 ENCODE Processing Pipeline 617ef207f5d398e7dfe25e443339a91e https://www.encodeproject.org/files/ENCFF928BSV/@@download/ENCFF928BSV.bigBed mm10 released low read length, low read depth ENCFF309UIE bigWig signal p-value ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF742VJP, ENCFF976AWB 443266098 ENCODE Processing Pipeline c50cc1f2994e1664869c92c7a0384271 https://www.encodeproject.org/files/ENCFF309UIE/@@download/ENCFF309UIE.bigWig mm10 released low read length, low read depth ENCFF334WPX bigWig signal p-value ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF742VJP, ENCFF931ASG 487005701 ENCODE Processing Pipeline 83df1e1b13a17a5c5fa5a650fdf668d0 https://www.encodeproject.org/files/ENCFF334WPX/@@download/ENCFF334WPX.bigWig mm10 released low read length, low read depth ENCFF184MGA bigWig signal p-value ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF394IRO, ENCFF742VJP, ENCFF931ASG, ENCFF976AWB 631959432 ENCODE Processing Pipeline daa8c32e68fd98c92ec35124db768922 https://www.encodeproject.org/files/ENCFF184MGA/@@download/ENCFF184MGA.bigWig mm10 released low read length, low read depth ENCFF505FBF bigWig fold change over control ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF742VJP, ENCFF976AWB 401229844 ENCODE Processing Pipeline c74c5cca7cd785f0d49b01fb65809796 https://www.encodeproject.org/files/ENCFF505FBF/@@download/ENCFF505FBF.bigWig mm10 released low read length, low read depth ENCFF303DDX bigWig fold change over control ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF742VJP, ENCFF931ASG 370227938 ENCODE Processing Pipeline 4fc2862922033c41c53da0ee51eef138 https://www.encodeproject.org/files/ENCFF303DDX/@@download/ENCFF303DDX.bigWig mm10 released low read length, low read depth ENCFF736SAK bigWig fold change over control ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF394IRO, ENCFF742VJP, ENCFF931ASG, ENCFF976AWB 602038613 ENCODE Processing Pipeline dd227fdad03b93c01c5d34c8fa839fbf https://www.encodeproject.org/files/ENCFF736SAK/@@download/ENCFF736SAK.bigWig mm10 released low read length, low read depth ENCFF420KHT bed narrowPeak replicated peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF572QPG, ENCFF675HTE, ENCFF684ICA 1116797 ENCODE Processing Pipeline 5d0c091f5ef9e0db8a3c2aa0d606ebf5 https://www.encodeproject.org/files/ENCFF420KHT/@@download/ENCFF420KHT.bed.gz mm10 released low read length, low read depth ENCFF858VSB bigBed narrowPeak replicated peaks ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF420KHT 2474827 ENCODE Processing Pipeline 0a061994c35dc2717485c083e544b8a8 https://www.encodeproject.org/files/ENCFF858VSB/@@download/ENCFF858VSB.bigBed mm10 released low read length, low read depth ENCFF819CUB fastq reads ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2261497927 Bing Ren, UCSD f492d66bf434c6148e23530e191ed802 SRA:SRR3652980 https://www.encodeproject.org/files/ENCFF819CUB/@@download/ENCFF819CUB.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF614OCT fastq reads ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2218523565 Bing Ren, UCSD ff310c9c87b42d18538c6f7ad4f65b8d SRA:SRR3652981 https://www.encodeproject.org/files/ENCFF614OCT/@@download/ENCFF614OCT.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF984VBZ bam alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF614OCT, ENCFF806TVZ 1493041288 ENCODE Processing Pipeline 030b33f65215dd71329d726fa3ed4d5d https://www.encodeproject.org/files/ENCFF984VBZ/@@download/ENCFF984VBZ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF124TCN bam alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF819CUB 1535873661 ENCODE Processing Pipeline c452a41be9bbfae99bd081878747d4f3 https://www.encodeproject.org/files/ENCFF124TCN/@@download/ENCFF124TCN.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF430MFC bed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF124TCN, ENCFF493BXI 933392 ENCODE Processing Pipeline 22ed918c5ab49df0a5a5a188c6377f6b https://www.encodeproject.org/files/ENCFF430MFC/@@download/ENCFF430MFC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF156RWM bed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF984VBZ 882903 ENCODE Processing Pipeline 07998235c06d00aed2a78dcfac8ad815 https://www.encodeproject.org/files/ENCFF156RWM/@@download/ENCFF156RWM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF263TUY bed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF124TCN, ENCFF330HOT, ENCFF493BXI, ENCFF984VBZ 1021051 ENCODE Processing Pipeline 73f9d7acf27582d8b275e6fab3a813c1 https://www.encodeproject.org/files/ENCFF263TUY/@@download/ENCFF263TUY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF448ABZ bigBed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF263TUY 3167810 ENCODE Processing Pipeline df780c90445bf5c5b19d3e2d22b87271 https://www.encodeproject.org/files/ENCFF448ABZ/@@download/ENCFF448ABZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF693YTI bigBed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF430MFC 2938293 ENCODE Processing Pipeline 29039f0bd956b0246acad4446c599aab https://www.encodeproject.org/files/ENCFF693YTI/@@download/ENCFF693YTI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF033SDZ bigWig signal p-value ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF984VBZ 576249350 ENCODE Processing Pipeline 099d94b3ed481f0ccaaa54e76df67579 https://www.encodeproject.org/files/ENCFF033SDZ/@@download/ENCFF033SDZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF881YST bigBed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF156RWM 2811219 ENCODE Processing Pipeline cdef9cf691bedc75ff881eb8c0bdfba0 https://www.encodeproject.org/files/ENCFF881YST/@@download/ENCFF881YST.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF388WJJ bigWig signal p-value ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF124TCN, ENCFF493BXI 480159215 ENCODE Processing Pipeline 1993699794426ecce8c92c726a089e37 https://www.encodeproject.org/files/ENCFF388WJJ/@@download/ENCFF388WJJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF150TAY bigWig signal p-value ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF124TCN, ENCFF330HOT, ENCFF493BXI, ENCFF984VBZ 858427066 ENCODE Processing Pipeline fda9a8b009be3ade3be3bc3e08e4c463 https://www.encodeproject.org/files/ENCFF150TAY/@@download/ENCFF150TAY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF280JHI bigWig fold change over control ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF984VBZ 522373788 ENCODE Processing Pipeline 0f3904dc3b0679861a011b2ef0052dd9 https://www.encodeproject.org/files/ENCFF280JHI/@@download/ENCFF280JHI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF605JWI bigWig fold change over control ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF124TCN, ENCFF493BXI 541696442 ENCODE Processing Pipeline e7c565a3e89f8c6133bd82acc8b3b571 https://www.encodeproject.org/files/ENCFF605JWI/@@download/ENCFF605JWI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF693CGO bigWig fold change over control ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF124TCN, ENCFF330HOT, ENCFF493BXI, ENCFF984VBZ 960224452 ENCODE Processing Pipeline 0c67219e6a03914cd749c5765040e88f https://www.encodeproject.org/files/ENCFF693CGO/@@download/ENCFF693CGO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF788RFF bigBed narrowPeak replicated peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF711LVW 2460796 ENCODE Processing Pipeline 83c3432538ed2b4974d1eed73ed31cf8 https://www.encodeproject.org/files/ENCFF788RFF/@@download/ENCFF788RFF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF711LVW bed narrowPeak replicated peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF156RWM, ENCFF263TUY, ENCFF430MFC 1060305 ENCODE Processing Pipeline 29cb7aff4016969887ebe0f6f093e942 https://www.encodeproject.org/files/ENCFF711LVW/@@download/ENCFF711LVW.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF401EXB bam unfiltered alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF819CUB 2471208058 ENCODE Processing Pipeline 5b984c645e66e1d56bb68376eb0ef2a3 https://www.encodeproject.org/files/ENCFF401EXB/@@download/ENCFF401EXB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF130PKG bam alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF819CUB 1535644265 ENCODE Processing Pipeline 018e86c28967bc74f252827bf2d6762f https://www.encodeproject.org/files/ENCFF130PKG/@@download/ENCFF130PKG.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF391AKJ bam unfiltered alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF614OCT 2441060791 ENCODE Processing Pipeline 41a96c704212f8d733035c9fa94625a4 https://www.encodeproject.org/files/ENCFF391AKJ/@@download/ENCFF391AKJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF112XOU bam alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF614OCT 1492797645 ENCODE Processing Pipeline 6a5e11398fd0ea7d10d176d87665ddd6 https://www.encodeproject.org/files/ENCFF112XOU/@@download/ENCFF112XOU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF821BSP bed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF112XOU, ENCFF279URC 898372 ENCODE Processing Pipeline cca66803721d85fff08a1f7d536bfa36 https://www.encodeproject.org/files/ENCFF821BSP/@@download/ENCFF821BSP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF240KTQ bed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF130PKG, ENCFF893IOJ 950874 ENCODE Processing Pipeline 937173f2069779d1e6a15d833ce5ceea https://www.encodeproject.org/files/ENCFF240KTQ/@@download/ENCFF240KTQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF085SAM bigBed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF821BSP 2852966 ENCODE Processing Pipeline 579060f3d414fce81745b55e8df6ca5b https://www.encodeproject.org/files/ENCFF085SAM/@@download/ENCFF085SAM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF960VTR bed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF112XOU, ENCFF130PKG, ENCFF279URC, ENCFF893IOJ 1036831 ENCODE Processing Pipeline 744394511ae259106a781107fbf0a632 https://www.encodeproject.org/files/ENCFF960VTR/@@download/ENCFF960VTR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF086MXL bigBed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF240KTQ 2983657 ENCODE Processing Pipeline 92c039370da3f2bea6220cc954620c72 https://www.encodeproject.org/files/ENCFF086MXL/@@download/ENCFF086MXL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF155SSH bigBed narrowPeak peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF960VTR 3200946 ENCODE Processing Pipeline eaf024ed7babc6d95b3734af8568c70f https://www.encodeproject.org/files/ENCFF155SSH/@@download/ENCFF155SSH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF235KYH bigWig signal p-value ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF112XOU, ENCFF279URC 521492079 ENCODE Processing Pipeline 367c00f2e4b875efdac2ef78c2d93971 https://www.encodeproject.org/files/ENCFF235KYH/@@download/ENCFF235KYH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF940RWX bigWig signal p-value ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF130PKG, ENCFF893IOJ 628368914 ENCODE Processing Pipeline 1fdcfaa80ba13b9f6aaa88467820acd8 https://www.encodeproject.org/files/ENCFF940RWX/@@download/ENCFF940RWX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF260VHB bigWig signal p-value ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF112XOU, ENCFF130PKG, ENCFF279URC, ENCFF893IOJ 806435641 ENCODE Processing Pipeline e5b102e942e8d4361f93aac6f479d00a https://www.encodeproject.org/files/ENCFF260VHB/@@download/ENCFF260VHB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF090CAJ bigWig fold change over control ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF112XOU, ENCFF279URC 585055226 ENCODE Processing Pipeline 6eccdb91c177b12214400d8f99d7f0f2 https://www.encodeproject.org/files/ENCFF090CAJ/@@download/ENCFF090CAJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF250HDQ bigWig fold change over control ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF130PKG, ENCFF893IOJ 582073075 ENCODE Processing Pipeline 34cf7bfa9ab94e0464bb03b20686b088 https://www.encodeproject.org/files/ENCFF250HDQ/@@download/ENCFF250HDQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF173LCU bigWig fold change over control ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF112XOU, ENCFF130PKG, ENCFF279URC, ENCFF893IOJ 1061358056 ENCODE Processing Pipeline 4d344c6d7cd473e60f594521347d21b3 https://www.encodeproject.org/files/ENCFF173LCU/@@download/ENCFF173LCU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF945PEV bed narrowPeak replicated peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF240KTQ, ENCFF821BSP, ENCFF960VTR 1066499 ENCODE Processing Pipeline f47065b678b8c87798ac67564813b498 https://www.encodeproject.org/files/ENCFF945PEV/@@download/ENCFF945PEV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF974RCK bigBed narrowPeak replicated peaks ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF945PEV 2474575 ENCODE Processing Pipeline 1473176650cc49c3e4edef9515346788 https://www.encodeproject.org/files/ENCFF974RCK/@@download/ENCFF974RCK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF291VOE fastq reads ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2693807250 Bing Ren, UCSD 243545cb0713a1aac7789fa632f337d3 SRA:SRR3653192 https://www.encodeproject.org/files/ENCFF291VOE/@@download/ENCFF291VOE.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF661YTO fastq reads ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3634351239 Bing Ren, UCSD 1617038f6fda159131129834f8d692b2 SRA:SRR3653191 https://www.encodeproject.org/files/ENCFF661YTO/@@download/ENCFF661YTO.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF792GEI bam alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF661YTO, ENCFF806TVZ 2811089497 ENCODE Processing Pipeline 30ef045bcbb6f1cb28dc35f4c9e182ac https://www.encodeproject.org/files/ENCFF792GEI/@@download/ENCFF792GEI.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF002TFZ bam alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF291VOE, ENCFF806TVZ 2073430918 ENCODE Processing Pipeline 43843bece32d6d14cb138b2dab631c10 https://www.encodeproject.org/files/ENCFF002TFZ/@@download/ENCFF002TFZ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF379ZGJ bam unfiltered alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018NEO, ENCFF661YTO 4339330839 ENCODE Processing Pipeline b612d6efe553611c2a575ed638d8b0ef https://www.encodeproject.org/files/ENCFF379ZGJ/@@download/ENCFF379ZGJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF880SQD bam alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF661YTO 2810411214 ENCODE Processing Pipeline b3e3921420c1be6def09a502d40f22d6 https://www.encodeproject.org/files/ENCFF880SQD/@@download/ENCFF880SQD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF293HIQ fastq reads ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 212133161 Bing Ren, UCSD 971804fd87507744c768556b291fb850 SRA:SRR3653194 https://www.encodeproject.org/files/ENCFF293HIQ/@@download/ENCFF293HIQ.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF572OIN fastq reads ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 324851029 Bing Ren, UCSD f448e7f4e5ea86f6ac86fb0a1eec8215 SRA:SRR3653195 https://www.encodeproject.org/files/ENCFF572OIN/@@download/ENCFF572OIN.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF901RYX bam alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF291VOE, ENCFF293HIQ, ENCFF572OIN 2640005554 ENCODE Processing Pipeline 0631a74e1efa1477c01b53d9e3debe51 https://www.encodeproject.org/files/ENCFF901RYX/@@download/ENCFF901RYX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF669UJV bam unfiltered alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF018NEO, ENCFF291VOE, ENCFF293HIQ, ENCFF572OIN 4068120307 ENCODE Processing Pipeline baa39178e0f1a4b3f37253f52a15e50e https://www.encodeproject.org/files/ENCFF669UJV/@@download/ENCFF669UJV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001NRJ bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NSL 275939567 Michael Snyder, Stanford afc707cb16c55ddff7496e0d675584df https://www.encodeproject.org/files/ENCFF001NRJ/@@download/ENCFF001NRJ.bam mm9 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRL bigBed narrowPeak peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJJ 94928 Michael Snyder, Stanford 848b3a16dc76233a9c5b998a18a7de97 https://www.encodeproject.org/files/ENCFF001NRL/@@download/ENCFF001NRL.bigBed mm9 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRM bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NSK 337650880 Michael Snyder, Stanford df61bff0cefc1c86a170b3eda061559c https://www.encodeproject.org/files/ENCFF001NRM/@@download/ENCFF001NRM.bam mm9 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NRP bigWig signal ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRJ, ENCFF001NRM 260332922 Michael Snyder, Stanford e23c799dbf35e94422137646cd36f33e https://www.encodeproject.org/files/ENCFF001NRP/@@download/ENCFF001NRP.bigWig mm9 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSK fastq reads ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 891997675 Michael Snyder, Stanford 2fc8094f9680de41167f9f944bcbe339 https://www.encodeproject.org/files/ENCFF001NSK/@@download/ENCFF001NSK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSL fastq reads ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1031236911 Michael Snyder, Stanford 6c76ac286ce5eea82d5888148e48e571 https://www.encodeproject.org/files/ENCFF001NSL/@@download/ENCFF001NSL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJJ bed narrowPeak peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NRJ, ENCFF001NRM 14187 Michael Snyder, Stanford b1268bdb9b9d907a5ef5f0ca0d2d2dbf https://www.encodeproject.org/files/ENCFF001YJJ/@@download/ENCFF001YJJ.bed.gz mm9 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF244EWN bam unfiltered alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NSL, ENCFF018NEO 1166633828 ENCODE Processing Pipeline 6d263cd2efcaba82c10fd6d84616b65a https://www.encodeproject.org/files/ENCFF244EWN/@@download/ENCFF244EWN.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF335SKO bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NSL, ENCFF018NEO 593402730 ENCODE Processing Pipeline f61383b89828a5518beaf715fe7f16da https://www.encodeproject.org/files/ENCFF335SKO/@@download/ENCFF335SKO.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF529WRC bam unfiltered alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NSK, ENCFF018NEO 1051239211 ENCODE Processing Pipeline ee12e95e941af84607828de5652106fd https://www.encodeproject.org/files/ENCFF529WRC/@@download/ENCFF529WRC.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF899YSW bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NSK, ENCFF018NEO 643421780 ENCODE Processing Pipeline b8f3f25faa17d0c9e9b5879f43377202 https://www.encodeproject.org/files/ENCFF899YSW/@@download/ENCFF899YSW.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF956HAY bigWig fold change over control ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF899YSW 248907201 ENCODE Processing Pipeline 23e14e51ef3f082144e153f9191318b1 https://www.encodeproject.org/files/ENCFF956HAY/@@download/ENCFF956HAY.bigWig mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF624HQU bed narrowPeak optimal idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065JNG, ENCFF289QRZ, ENCFF334JLD, ENCFF547MET 92029 ENCODE Processing Pipeline 83a772de8b10e4c2dd0f4a93aecf6805 https://www.encodeproject.org/files/ENCFF624HQU/@@download/ENCFF624HQU.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF345SPY bigWig signal p-value ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF335SKO 246347686 ENCODE Processing Pipeline f05306517c5ce03e21143e4aa49f4032 https://www.encodeproject.org/files/ENCFF345SPY/@@download/ENCFF345SPY.bigWig mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF240ORP bigWig fold change over control ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF335SKO, ENCFF899YSW 408444486 ENCODE Processing Pipeline c0618b4d697a41ab4edaeea9fdaddfd3 https://www.encodeproject.org/files/ENCFF240ORP/@@download/ENCFF240ORP.bigWig mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF226SDU bigBed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF289QRZ 12702039 ENCODE Processing Pipeline ce52b7798a4b556db05c561d80ac6090 https://www.encodeproject.org/files/ENCFF226SDU/@@download/ENCFF226SDU.bigBed mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF894HXN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF227IUE 159810 ENCODE Processing Pipeline f9fac35e2359e77aae07593ee0a1fe9f https://www.encodeproject.org/files/ENCFF894HXN/@@download/ENCFF894HXN.bigBed mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF334JLD bed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF335SKO 4519766 ENCODE Processing Pipeline 07b87174c2516541a993c360d0ff4673 https://www.encodeproject.org/files/ENCFF334JLD/@@download/ENCFF334JLD.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF181DJD bigBed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065JNG 12924983 ENCODE Processing Pipeline d4e898bf666abef30672b009160a40ba https://www.encodeproject.org/files/ENCFF181DJD/@@download/ENCFF181DJD.bigBed mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF068FUP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF624HQU 218137 ENCODE Processing Pipeline adc277200f1442b3043e105dac4f38c3 https://www.encodeproject.org/files/ENCFF068FUP/@@download/ENCFF068FUP.bigBed mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF901TDO bigBed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF334JLD 10374541 ENCODE Processing Pipeline 99fb63b8012057ff945d1e135c0b6318 https://www.encodeproject.org/files/ENCFF901TDO/@@download/ENCFF901TDO.bigBed mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF705AHK bigWig signal p-value ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF899YSW 265076488 ENCODE Processing Pipeline 527f3880b26ebb17e9caf84d4937b39f https://www.encodeproject.org/files/ENCFF705AHK/@@download/ENCFF705AHK.bigWig mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF837UJM bigWig signal p-value ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF335SKO, ENCFF899YSW 302384021 ENCODE Processing Pipeline 10d848993e9e3ba79a52a736be4d6f97 https://www.encodeproject.org/files/ENCFF837UJM/@@download/ENCFF837UJM.bigWig mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF026OHN bigWig fold change over control ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF335SKO 237512277 ENCODE Processing Pipeline 8be96b6dd677aa9babd75325402ad07d https://www.encodeproject.org/files/ENCFF026OHN/@@download/ENCFF026OHN.bigWig mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF227IUE bed narrowPeak conservative idr thresholded peaks ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF065JNG, ENCFF289QRZ, ENCFF334JLD, ENCFF547MET 54425 ENCODE Processing Pipeline 349360792ac3174547ea5e6fdc448dd3 https://www.encodeproject.org/files/ENCFF227IUE/@@download/ENCFF227IUE.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF289QRZ bed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF899YSW 4989508 ENCODE Processing Pipeline b270438dc50c03c7c71674aa2ae91c8c https://www.encodeproject.org/files/ENCFF289QRZ/@@download/ENCFF289QRZ.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF065JNG bed narrowPeak peaks and background as input for IDR ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF335SKO, ENCFF899YSW 5337293 ENCODE Processing Pipeline cab11685164069fc96376da15a5cc312 https://www.encodeproject.org/files/ENCFF065JNG/@@download/ENCFF065JNG.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWC bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NWN 414324315 Michael Snyder, Stanford fde7a1efd99595b96e82d01eb4ce8ae4 https://www.encodeproject.org/files/ENCFF001NWC/@@download/ENCFF001NWC.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWD bigBed narrowPeak peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJU 690480 Michael Snyder, Stanford 132596b484aa17d9698a81185c72a022 https://www.encodeproject.org/files/ENCFF001NWD/@@download/ENCFF001NWD.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWE bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NWM 487404349 Michael Snyder, Stanford f34585fc7453624ef461928600123652 https://www.encodeproject.org/files/ENCFF001NWE/@@download/ENCFF001NWE.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWF bigWig signal ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWC, ENCFF001NWE 335898901 Michael Snyder, Stanford c4f3b093c23b26daf5ed05d5f94bee57 https://www.encodeproject.org/files/ENCFF001NWF/@@download/ENCFF001NWF.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWM fastq reads ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1010181748 Michael Snyder, Stanford 216a85454f84e59602c8b8fda8f1a9d6 https://www.encodeproject.org/files/ENCFF001NWM/@@download/ENCFF001NWM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWN fastq reads ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1178409479 Michael Snyder, Stanford f48252e5837f1a4326c431586f48ea3e https://www.encodeproject.org/files/ENCFF001NWN/@@download/ENCFF001NWN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJU bed narrowPeak peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWC, ENCFF001NWE 290699 Michael Snyder, Stanford 57bc5e40b33f16ca45b245c5e46ebdaa https://www.encodeproject.org/files/ENCFF001YJU/@@download/ENCFF001YJU.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF975EFZ bam unfiltered alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWM, ENCFF018NEO 1167519013 ENCODE Processing Pipeline 46342ed748508a2296c9935d0b485b67 https://www.encodeproject.org/files/ENCFF975EFZ/@@download/ENCFF975EFZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF662OAR bam unfiltered alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWN, ENCFF018NEO 1341519396 ENCODE Processing Pipeline fc650a2bb1240d59f9ee3a06610d49b3 https://www.encodeproject.org/files/ENCFF662OAR/@@download/ENCFF662OAR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF882LCZ bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWN, ENCFF018NEO 787576613 ENCODE Processing Pipeline 1b90a78a1bab67d1b9a27dd79fc8aff4 https://www.encodeproject.org/files/ENCFF882LCZ/@@download/ENCFF882LCZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF967BIA bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWM, ENCFF018NEO 748085534 ENCODE Processing Pipeline b87d4bcd5983069eefba01f5a1bf4b48 https://www.encodeproject.org/files/ENCFF967BIA/@@download/ENCFF967BIA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF492VIQ bigWig fold change over control ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF967BIA 315864352 ENCODE Processing Pipeline d820cf801b4a13788be85ab3445c2d59 https://www.encodeproject.org/files/ENCFF492VIQ/@@download/ENCFF492VIQ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF780AWC bigWig fold change over control ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF882LCZ, ENCFF967BIA 513736489 ENCODE Processing Pipeline 31e428dc0704d5faf2bd35a5a72462b0 https://www.encodeproject.org/files/ENCFF780AWC/@@download/ENCFF780AWC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF745WHA bed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF882LCZ 6053670 ENCODE Processing Pipeline bb170ba5a8b9add20515131ec6100273 https://www.encodeproject.org/files/ENCFF745WHA/@@download/ENCFF745WHA.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF019YYF bed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF967BIA 6070535 ENCODE Processing Pipeline 429914b8398717948bf47091608227f4 https://www.encodeproject.org/files/ENCFF019YYF/@@download/ENCFF019YYF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF060SFQ bed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF882LCZ, ENCFF967BIA 6624448 ENCODE Processing Pipeline 3e074efcfc5f8273ee51e4bdb1825f86 https://www.encodeproject.org/files/ENCFF060SFQ/@@download/ENCFF060SFQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF308ZDK bigWig signal p-value ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF882LCZ 296484909 ENCODE Processing Pipeline 19b7d440f745834803dc484562e62601 https://www.encodeproject.org/files/ENCFF308ZDK/@@download/ENCFF308ZDK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF614WMV bigWig signal p-value ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF967BIA 298358244 ENCODE Processing Pipeline b172953dfabd0cba0f4b5772e9479808 https://www.encodeproject.org/files/ENCFF614WMV/@@download/ENCFF614WMV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF293THU bigWig signal p-value ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF882LCZ, ENCFF967BIA 294804401 ENCODE Processing Pipeline 913de16adfbf831c21cdec325fd33aa6 https://www.encodeproject.org/files/ENCFF293THU/@@download/ENCFF293THU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF841TLD bigWig fold change over control ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF882LCZ 297694885 ENCODE Processing Pipeline a5b98d43cd3c7d90b055a1f149fc43b8 https://www.encodeproject.org/files/ENCFF841TLD/@@download/ENCFF841TLD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF766FEW bigBed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF745WHA 12682400 ENCODE Processing Pipeline 2e319b7c97d3bdd0c3272a19ecb06af2 https://www.encodeproject.org/files/ENCFF766FEW/@@download/ENCFF766FEW.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF963ABX bigBed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF019YYF 12871794 ENCODE Processing Pipeline 1f9f4ae3b51ad2c42666fe05c8a9fa34 https://www.encodeproject.org/files/ENCFF963ABX/@@download/ENCFF963ABX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF091HDM bigBed narrowPeak peaks and background as input for IDR ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF060SFQ 12913435 ENCODE Processing Pipeline 5cbd5386b39293d47a4b6a04ff07d0bf https://www.encodeproject.org/files/ENCFF091HDM/@@download/ENCFF091HDM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF500BVN bed narrowPeak conservative idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF019YYF, ENCFF060SFQ, ENCFF547MET, ENCFF745WHA 684702 ENCODE Processing Pipeline ad1fac54056f7a328580b012c5d72f47 https://www.encodeproject.org/files/ENCFF500BVN/@@download/ENCFF500BVN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF124TRY bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500BVN 1635308 ENCODE Processing Pipeline 71064188490596d7c1a01aeb67abf98d https://www.encodeproject.org/files/ENCFF124TRY/@@download/ENCFF124TRY.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF473GQJ bed narrowPeak optimal idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF019YYF, ENCFF060SFQ, ENCFF547MET, ENCFF745WHA 731093 ENCODE Processing Pipeline 0d2b8c6d083a873f54e06433cf2ad03a https://www.encodeproject.org/files/ENCFF473GQJ/@@download/ENCFF473GQJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF132BSG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF473GQJ 1730342 ENCODE Processing Pipeline f7a064e60bb2eec88edfa73bf78b34ca https://www.encodeproject.org/files/ENCFF132BSG/@@download/ENCFF132BSG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001KUR fastq reads ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 30 single-ended 522072851 Bing Ren, UCSD b708430929aff9f6d5e9846df82bca82 https://www.encodeproject.org/files/ENCFF001KUR/@@download/ENCFF001KUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KVR/ released mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length insufficient read depth, insufficient read length extremely low read depth ENCFF001KUV fastq reads ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 30 single-ended 333693336 Bing Ren, UCSD f3667a1d6a132c67c03014994f505997 https://www.encodeproject.org/files/ENCFF001KUV/@@download/ENCFF001KUV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001KWE/ released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001KVL bam alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KUV 339602047 Bing Ren, UCSD f9a8d4869fc483b88d4a38599112104c https://www.encodeproject.org/files/ENCFF001KVL/@@download/ENCFF001KVL.bam mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001KVM bigBed broadPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XZD 367276 Bing Ren, UCSD 02014410864620b4ee53ee1a0f8bcae5 https://www.encodeproject.org/files/ENCFF001KVM/@@download/ENCFF001KVM.bigBed mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001KVN bam alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KUR 520611069 Bing Ren, UCSD 1adb79952f432199c0358262201c2103 https://www.encodeproject.org/files/ENCFF001KVN/@@download/ENCFF001KVN.bam mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001KVO bigWig signal ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KVL, ENCFF001KVN 34641966 Bing Ren, UCSD 656a5a157a2d6de05f3246a1abb0757c https://www.encodeproject.org/files/ENCFF001KVO/@@download/ENCFF001KVO.bigWig mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001XZD bed broadPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KVL, ENCFF001KVN 238100 Bing Ren, UCSD 92b175685ed346d01e92abcb1f3ccda3 https://www.encodeproject.org/files/ENCFF001XZD/@@download/ENCFF001XZD.bed.gz mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF510VPW bam unfiltered alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 30 ENCFF001KUV, ENCFF018NEO 365451995 ENCODE Processing Pipeline 9e727b98a78224f3366b5b0fe1d3cf8a https://www.encodeproject.org/files/ENCFF510VPW/@@download/ENCFF510VPW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF703NIT bam unfiltered alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 30 ENCFF001KUR, ENCFF018NEO 537988653 ENCODE Processing Pipeline d6707c3c5cdb1272ebd8e47299887cad https://www.encodeproject.org/files/ENCFF703NIT/@@download/ENCFF703NIT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF723UVS bam alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 30 ENCFF001KUV, ENCFF018NEO 182510659 ENCODE Processing Pipeline aed3e6dc9ce5b127648ace4a848f3b4f https://www.encodeproject.org/files/ENCFF723UVS/@@download/ENCFF723UVS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF986ZHA bam alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 30 ENCFF001KUR, ENCFF018NEO 329343883 ENCODE Processing Pipeline 3c40a4f3e8e65677ef353f2c9cd08603 https://www.encodeproject.org/files/ENCFF986ZHA/@@download/ENCFF986ZHA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF112HJE bed narrowPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF986ZHA 790376 ENCODE Processing Pipeline ba530b21d008348dea7e35c89e8bbff1 https://www.encodeproject.org/files/ENCFF112HJE/@@download/ENCFF112HJE.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF574OJR bed narrowPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF314OGN, ENCFF705BZU, ENCFF723UVS 1365631 ENCODE Processing Pipeline 2376c97acd3cc4cccbc1fee96ada5283 https://www.encodeproject.org/files/ENCFF574OJR/@@download/ENCFF574OJR.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF737AYT bed narrowPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF314OGN, ENCFF705BZU, ENCFF723UVS, ENCFF986ZHA 780406 ENCODE Processing Pipeline 2964323a963fe9e474a44f0a3be925e6 https://www.encodeproject.org/files/ENCFF737AYT/@@download/ENCFF737AYT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF724WQV bigBed narrowPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF112HJE 2307090 ENCODE Processing Pipeline b54f54e8f4b86f195a7185964c82ca3a https://www.encodeproject.org/files/ENCFF724WQV/@@download/ENCFF724WQV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF794HKU bigBed narrowPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF574OJR 3564243 ENCODE Processing Pipeline f3c27b732001ca1a2a9135a248e2aa98 https://www.encodeproject.org/files/ENCFF794HKU/@@download/ENCFF794HKU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF554NRR bigBed narrowPeak peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF737AYT 2246580 ENCODE Processing Pipeline 5c998f3c8d0a1374601f5242fefd8a59 https://www.encodeproject.org/files/ENCFF554NRR/@@download/ENCFF554NRR.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF769BAR bed narrowPeak replicated peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF112HJE, ENCFF574OJR, ENCFF737AYT 815834 ENCODE Processing Pipeline 7e6ee38fa860ccdbc28864a119add389 https://www.encodeproject.org/files/ENCFF769BAR/@@download/ENCFF769BAR.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF347ZYP bigWig fold change over control ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF314OGN, ENCFF705BZU, ENCFF723UVS, ENCFF986ZHA 239032050 ENCODE Processing Pipeline a956d47a157904c54298513528cb41d9 https://www.encodeproject.org/files/ENCFF347ZYP/@@download/ENCFF347ZYP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF316LSU bigWig fold change over control ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF986ZHA 149939124 ENCODE Processing Pipeline 1023892a5bc8200c61a5aeb9f3e820cd https://www.encodeproject.org/files/ENCFF316LSU/@@download/ENCFF316LSU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF268GIQ bigBed narrowPeak replicated peaks ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF769BAR 1808367 ENCODE Processing Pipeline b96c0a14534c9ec0a7d02d6f212ea7e4 https://www.encodeproject.org/files/ENCFF268GIQ/@@download/ENCFF268GIQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF328TUE bigWig signal p-value ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF986ZHA 396723014 ENCODE Processing Pipeline 9226ccc0d4cad01951a473696d77c909 https://www.encodeproject.org/files/ENCFF328TUE/@@download/ENCFF328TUE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF130VNI bigWig signal p-value ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF314OGN, ENCFF705BZU, ENCFF723UVS, ENCFF986ZHA 433013403 ENCODE Processing Pipeline e84c7231e9b471a44374bc35271199bc https://www.encodeproject.org/files/ENCFF130VNI/@@download/ENCFF130VNI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF972ZNE bigWig fold change over control ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF314OGN, ENCFF705BZU, ENCFF723UVS 111935633 ENCODE Processing Pipeline f9ad96c05e756c5ae4a3aded093dba8d https://www.encodeproject.org/files/ENCFF972ZNE/@@download/ENCFF972ZNE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF280DSI bigWig signal p-value ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF314OGN, ENCFF705BZU, ENCFF723UVS 362629976 ENCODE Processing Pipeline 5ac0f37ae6f1cb05cf9d59de60c8f528 https://www.encodeproject.org/files/ENCFF280DSI/@@download/ENCFF280DSI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001ZRA fastq reads ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 622602112 Bing Ren, UCSD b21dacda759a0203ff6b3c18024a7233 SRA:SRR3652027 https://www.encodeproject.org/files/ENCFF001ZRA/@@download/ENCFF001ZRA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001ZRC fastq reads ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 728395213 Bing Ren, UCSD 04bd24d3391ad96604ddcbfd61541b5c SRA:SRR3652026 https://www.encodeproject.org/files/ENCFF001ZRC/@@download/ENCFF001ZRC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUI/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF474USE bam alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRC, ENCFF806TVZ 551046507 ENCODE Processing Pipeline 9ba3b476d97eb9c21deaf3249c74a878 https://www.encodeproject.org/files/ENCFF474USE/@@download/ENCFF474USE.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF199HGH bam alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRA, ENCFF806TVZ 523433808 ENCODE Processing Pipeline f4796c6641ebc7ca99067532244e4ef6 https://www.encodeproject.org/files/ENCFF199HGH/@@download/ENCFF199HGH.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF336TSA bed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF199HGH, ENCFF265KAG, ENCFF851KTA 1018893 ENCODE Processing Pipeline 1af4308519c91a7cb9e27eac54c97da1 https://www.encodeproject.org/files/ENCFF336TSA/@@download/ENCFF336TSA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF556JOO bed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF474USE, ENCFF851KTA 667922 ENCODE Processing Pipeline de5d5772a5a1991d457a7a36714e610c https://www.encodeproject.org/files/ENCFF556JOO/@@download/ENCFF556JOO.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF982UPB bed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF199HGH, ENCFF265KAG, ENCFF474USE, ENCFF851KTA 741912 ENCODE Processing Pipeline c5dcf152b81da0b56510d26126b3d53e https://www.encodeproject.org/files/ENCFF982UPB/@@download/ENCFF982UPB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF774ZYK bigBed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF336TSA 2608275 ENCODE Processing Pipeline 9a91b9bd51791ffb26c23fa58ab30320 https://www.encodeproject.org/files/ENCFF774ZYK/@@download/ENCFF774ZYK.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF833LCB bigBed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF556JOO 1786363 ENCODE Processing Pipeline e3474e9ede6b06ee51fb11db6b15d20c https://www.encodeproject.org/files/ENCFF833LCB/@@download/ENCFF833LCB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF571KWA bigBed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF982UPB 1922863 ENCODE Processing Pipeline f8e82cc406943ccb66c01ff2463342ba https://www.encodeproject.org/files/ENCFF571KWA/@@download/ENCFF571KWA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF339LDR bigWig signal p-value ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF199HGH, ENCFF265KAG, ENCFF851KTA 244052923 ENCODE Processing Pipeline 44b77cc6e59f4ca94476efb4620275d8 https://www.encodeproject.org/files/ENCFF339LDR/@@download/ENCFF339LDR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF876UVG bigWig signal p-value ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF474USE, ENCFF851KTA 281026070 ENCODE Processing Pipeline 294bbc8f26a68cf76805ed0c7a9f387d https://www.encodeproject.org/files/ENCFF876UVG/@@download/ENCFF876UVG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF436CKY bigWig signal p-value ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF199HGH, ENCFF265KAG, ENCFF474USE, ENCFF851KTA 420274650 ENCODE Processing Pipeline 1a40a384097c0e89f91044feeba76fda https://www.encodeproject.org/files/ENCFF436CKY/@@download/ENCFF436CKY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF110YOP bigWig fold change over control ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF474USE, ENCFF851KTA 257770321 ENCODE Processing Pipeline 74f215c35b5690b3feb8592f7f4a6818 https://www.encodeproject.org/files/ENCFF110YOP/@@download/ENCFF110YOP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF390TQN bigWig fold change over control ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF199HGH, ENCFF265KAG, ENCFF851KTA 252960186 ENCODE Processing Pipeline 6ff0bdf21d9afba639c1429b8e9c7573 https://www.encodeproject.org/files/ENCFF390TQN/@@download/ENCFF390TQN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF109VNX bigWig fold change over control ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF199HGH, ENCFF265KAG, ENCFF474USE, ENCFF851KTA 426557310 ENCODE Processing Pipeline 2a45ad897047b7009d238dcf26a7d5bc https://www.encodeproject.org/files/ENCFF109VNX/@@download/ENCFF109VNX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF965YEH bigBed narrowPeak replicated peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF931ISB 1251983 ENCODE Processing Pipeline 2ba805716ee684487475226764a5fc97 https://www.encodeproject.org/files/ENCFF965YEH/@@download/ENCFF965YEH.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF931ISB bed narrowPeak replicated peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF336TSA, ENCFF556JOO, ENCFF982UPB 548222 ENCODE Processing Pipeline 1e0a012bc293d4e273202e972f3ed08f https://www.encodeproject.org/files/ENCFF931ISB/@@download/ENCFF931ISB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF512SFE bam unfiltered alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRA, ENCFF018NEO 804168569 ENCODE Processing Pipeline d88fa13d3a46a8590f05bad7445d1e17 https://www.encodeproject.org/files/ENCFF512SFE/@@download/ENCFF512SFE.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF515PKL bam unfiltered alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRC, ENCFF018NEO 923863510 ENCODE Processing Pipeline c45409e5bbcfbabbc5b25556043fc8c0 https://www.encodeproject.org/files/ENCFF515PKL/@@download/ENCFF515PKL.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF968EIP bam alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRA, ENCFF018NEO 523288754 ENCODE Processing Pipeline f3549d62c7f1962b038543a0435319f5 https://www.encodeproject.org/files/ENCFF968EIP/@@download/ENCFF968EIP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF297SAH bam alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRC, ENCFF018NEO 550900372 ENCODE Processing Pipeline 1499b95195df94f6cb4e1bf83832c193 https://www.encodeproject.org/files/ENCFF297SAH/@@download/ENCFF297SAH.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF036LSD bed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297SAH, ENCFF512NUW 492413 ENCODE Processing Pipeline a4b4cdf3fd2b59e47eea1d3f0f216b17 https://www.encodeproject.org/files/ENCFF036LSD/@@download/ENCFF036LSD.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF386VOW bigWig fold change over control ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297SAH, ENCFF512NUW 211970880 ENCODE Processing Pipeline ef7c3dc62c60580f936853e0a840d3a7 https://www.encodeproject.org/files/ENCFF386VOW/@@download/ENCFF386VOW.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF348LXJ bigBed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF555YHT 1923803 ENCODE Processing Pipeline 649b7d063992a48afa85145c56f051ac https://www.encodeproject.org/files/ENCFF348LXJ/@@download/ENCFF348LXJ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF919ZKM bigWig signal p-value ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297SAH, ENCFF512NUW 218120472 ENCODE Processing Pipeline 02e70b8fa82450901cd50373ba348b47 https://www.encodeproject.org/files/ENCFF919ZKM/@@download/ENCFF919ZKM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF967PUJ bigWig signal p-value ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297SAH, ENCFF377IXU, ENCFF512NUW, ENCFF968EIP 420148546 ENCODE Processing Pipeline 94550ea8ec3ab33513f20b8955304360 https://www.encodeproject.org/files/ENCFF967PUJ/@@download/ENCFF967PUJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF251KMJ bigBed narrowPeak replicated peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF272TNO 1215172 ENCODE Processing Pipeline 171c3de629617a2a6dde4431f0830ebd https://www.encodeproject.org/files/ENCFF251KMJ/@@download/ENCFF251KMJ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF555YHT bed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297SAH, ENCFF377IXU, ENCFF512NUW, ENCFF968EIP 742076 ENCODE Processing Pipeline 8a83feb4d12af9cc3ab454ce1c5e4535 https://www.encodeproject.org/files/ENCFF555YHT/@@download/ENCFF555YHT.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF898MOQ bed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF968EIP 1019441 ENCODE Processing Pipeline 3bfdb5c2c70afef96353d60594eadbe8 https://www.encodeproject.org/files/ENCFF898MOQ/@@download/ENCFF898MOQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF996IHL bigBed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF898MOQ 2609576 ENCODE Processing Pipeline 30c0b4fd52323e3d63f819baae3a63d6 https://www.encodeproject.org/files/ENCFF996IHL/@@download/ENCFF996IHL.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF492VRB bigBed narrowPeak peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036LSD 1384813 ENCODE Processing Pipeline 62dbee1e88f3aa540657e5407784045d https://www.encodeproject.org/files/ENCFF492VRB/@@download/ENCFF492VRB.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF218WVC bigWig signal p-value ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF968EIP 330416744 ENCODE Processing Pipeline 661cd7ee656632ba1a5d3b53feb33c7c https://www.encodeproject.org/files/ENCFF218WVC/@@download/ENCFF218WVC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF564VNL bigWig fold change over control ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF968EIP 252498905 ENCODE Processing Pipeline 9dc10049d66b2fc08797fb0838a56ffe https://www.encodeproject.org/files/ENCFF564VNL/@@download/ENCFF564VNL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF089IXS bigWig fold change over control ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297SAH, ENCFF377IXU, ENCFF512NUW, ENCFF968EIP 427082308 ENCODE Processing Pipeline 3de37de8bc82afbb2f6630b17af4b8f8 https://www.encodeproject.org/files/ENCFF089IXS/@@download/ENCFF089IXS.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF272TNO bed narrowPeak replicated peaks ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036LSD, ENCFF555YHT, ENCFF898MOQ 528199 ENCODE Processing Pipeline a9f30d07c73ed99ccdd0222fefac0b54 https://www.encodeproject.org/files/ENCFF272TNO/@@download/ENCFF272TNO.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001MVZ bam alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MWB 657611441 Ross Hardison, PennState 793fcd334f2f550ff3e708cf73b0378a https://www.encodeproject.org/files/ENCFF001MVZ/@@download/ENCFF001MVZ.bam mm9 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF001MWA bam alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MWM 6592274471 Ross Hardison, PennState fcec7eef6d8170bd6f87c4b3db28b565 https://www.encodeproject.org/files/ENCFF001MWA/@@download/ENCFF001MWA.bam mm9 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF001MWB fastq reads ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 553803104 Ross Hardison, PennState eb11a3bed9bd0a27335511756b1f0ae4 https://www.encodeproject.org/files/ENCFF001MWB/@@download/ENCFF001MWB.fastq.gz Illumina Genome Analyzer IIx released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF001MWC bigWig signal ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1036623236 Ross Hardison, PennState b0e6e13af5f44865c3e2dcbf59800d53 https://www.encodeproject.org/files/ENCFF001MWC/@@download/ENCFF001MWC.bigWig mm9 released low read length, inconsistent platforms, mixed read lengths missing derived_from insufficient read depth ENCFF001MWD bigWig signal ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5500082782 Ross Hardison, PennState 8b87fe200d2f725e150180c71ca8d091 https://www.encodeproject.org/files/ENCFF001MWD/@@download/ENCFF001MWD.bigWig mm9 released low read length, inconsistent platforms, mixed read lengths missing derived_from insufficient read depth ENCFF001MWE bigWig signal ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 5656886852 Ross Hardison, PennState a920b3ea13270fb08a1ac15e1c1afab0 https://www.encodeproject.org/files/ENCFF001MWE/@@download/ENCFF001MWE.bigWig mm9 released low read length, inconsistent platforms, mixed read lengths missing derived_from insufficient read depth ENCFF001MWM fastq reads ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 5579742041 Ross Hardison, PennState 0b903105a848c33fc360eb2efca81eaf https://www.encodeproject.org/files/ENCFF001MWM/@@download/ENCFF001MWM.fastq.gz Illumina HiSeq 2000 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF697IJQ bam unfiltered alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MWM, ENCFF806TVZ 6795953133 J. Michael Cherry, Stanford 468f7b5db8c9dd5717c71b9038c2fbf7 https://www.encodeproject.org/files/ENCFF697IJQ/@@download/ENCFF697IJQ.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF929RCI bam unfiltered alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MWB, ENCFF806TVZ 694345090 J. Michael Cherry, Stanford a23c546b32f545b84c95c7f4c2ccf115 https://www.encodeproject.org/files/ENCFF929RCI/@@download/ENCFF929RCI.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF522XPD bam unfiltered alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWB, ENCFF018NEO 695036067 ENCODE Processing Pipeline a4b3f97209a17fb0783eeacfb09ca500 https://www.encodeproject.org/files/ENCFF522XPD/@@download/ENCFF522XPD.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF339MRB bam alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWB, ENCFF018NEO 495432195 ENCODE Processing Pipeline 5088db2c1fdb124df1e7112a2144abe7 https://www.encodeproject.org/files/ENCFF339MRB/@@download/ENCFF339MRB.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF522JXN bam unfiltered alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWM, ENCFF018NEO 5400011509 ENCODE Processing Pipeline d1d47fe55ddef775c598ea2acd10a8d0 https://www.encodeproject.org/files/ENCFF522JXN/@@download/ENCFF522JXN.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF484XJK bam alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWM, ENCFF018NEO 3747967475 ENCODE Processing Pipeline fddfe5d8f96792c3b98b221f48d490ff https://www.encodeproject.org/files/ENCFF484XJK/@@download/ENCFF484XJK.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF290RFB fastq reads ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2176387365 Bing Ren, UCSD 253afc05ce76638418dd71b302d0fbd8 SRA:SRR3652896 https://www.encodeproject.org/files/ENCFF290RFB/@@download/ENCFF290RFB.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF896FUL fastq reads ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2304895409 Bing Ren, UCSD 8620e1ac68fa57e733a92d02dbf57cc3 SRA:SRR3652895 https://www.encodeproject.org/files/ENCFF896FUL/@@download/ENCFF896FUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF903NUM bam alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF896FUL 1540125435 ENCODE Processing Pipeline ef37e5169a0223a1ede6d609a99902f4 https://www.encodeproject.org/files/ENCFF903NUM/@@download/ENCFF903NUM.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF537KDI bam alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF290RFB, ENCFF806TVZ 1390847008 ENCODE Processing Pipeline 709ddd131239bae66a74846b1f8c6d76 https://www.encodeproject.org/files/ENCFF537KDI/@@download/ENCFF537KDI.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF697UCX bed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF537KDI, ENCFF541RVC 863475 ENCODE Processing Pipeline e1c693b11d5f85ee0e9be2a4294a2e8f https://www.encodeproject.org/files/ENCFF697UCX/@@download/ENCFF697UCX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF489MNF bed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF674GBO, ENCFF903NUM 827216 ENCODE Processing Pipeline 0f86c9b227610a81e182e624142c8800 https://www.encodeproject.org/files/ENCFF489MNF/@@download/ENCFF489MNF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF912MHM bed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF537KDI, ENCFF541RVC, ENCFF674GBO, ENCFF903NUM 950233 ENCODE Processing Pipeline 3aca7e825b3d8cff2c794bf07e63b152 https://www.encodeproject.org/files/ENCFF912MHM/@@download/ENCFF912MHM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF619TLP bigBed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF489MNF 2577371 ENCODE Processing Pipeline 5293693e6c32d0c76959e9fd02d88460 https://www.encodeproject.org/files/ENCFF619TLP/@@download/ENCFF619TLP.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF523IZD bigBed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF697UCX 2665097 ENCODE Processing Pipeline 97e070867742f618d05f026430a03369 https://www.encodeproject.org/files/ENCFF523IZD/@@download/ENCFF523IZD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF105NIA bigBed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF912MHM 2856368 ENCODE Processing Pipeline dd1183dc296e4742b293f450f31bddf8 https://www.encodeproject.org/files/ENCFF105NIA/@@download/ENCFF105NIA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF343BQM bigWig signal p-value ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF537KDI, ENCFF541RVC 506596725 ENCODE Processing Pipeline 90c90ab66ab26a09e18b2cb641f76e0e https://www.encodeproject.org/files/ENCFF343BQM/@@download/ENCFF343BQM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF928DIM bigWig signal p-value ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF674GBO, ENCFF903NUM 535008653 ENCODE Processing Pipeline dfc493156aba65a3ca2570cac5558df0 https://www.encodeproject.org/files/ENCFF928DIM/@@download/ENCFF928DIM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF394SIJ bigWig fold change over control ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF537KDI, ENCFF541RVC 466965472 ENCODE Processing Pipeline cbd8d0c5bc0181eb7602d2a21f2366a3 https://www.encodeproject.org/files/ENCFF394SIJ/@@download/ENCFF394SIJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF438UBQ bigWig signal p-value ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF537KDI, ENCFF541RVC, ENCFF674GBO, ENCFF903NUM 788452772 ENCODE Processing Pipeline c1ff1bc5bfca83a3d676b3309092388d https://www.encodeproject.org/files/ENCFF438UBQ/@@download/ENCFF438UBQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF557WUY bigWig fold change over control ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF674GBO, ENCFF903NUM 518496461 ENCODE Processing Pipeline 0252c256268d62f764f013c6282cc03a https://www.encodeproject.org/files/ENCFF557WUY/@@download/ENCFF557WUY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF987SWE bigWig fold change over control ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF537KDI, ENCFF541RVC, ENCFF674GBO, ENCFF903NUM 970005957 ENCODE Processing Pipeline 5c7689522413465acb6186874653f255 https://www.encodeproject.org/files/ENCFF987SWE/@@download/ENCFF987SWE.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF105LNJ bed narrowPeak replicated peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF489MNF, ENCFF697UCX, ENCFF912MHM 1035477 ENCODE Processing Pipeline 741d786eb1905deef2b6ba2772516629 https://www.encodeproject.org/files/ENCFF105LNJ/@@download/ENCFF105LNJ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF410RNI bigBed narrowPeak replicated peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF105LNJ 2290790 ENCODE Processing Pipeline 6c22de246dda778b105be3bba1e205f0 https://www.encodeproject.org/files/ENCFF410RNI/@@download/ENCFF410RNI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF992XBC bam unfiltered alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF290RFB 2355654020 ENCODE Processing Pipeline 6e7c9c4689231215db6acbbac6d09cab https://www.encodeproject.org/files/ENCFF992XBC/@@download/ENCFF992XBC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF913SYU bam unfiltered alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF896FUL 2518945517 ENCODE Processing Pipeline 4b2e3fc02b77009bd2301ba81e8bd4a4 https://www.encodeproject.org/files/ENCFF913SYU/@@download/ENCFF913SYU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF191ZBM bam alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF290RFB 1390611583 ENCODE Processing Pipeline 05b73df16d630189e881c0cb47d1ef47 https://www.encodeproject.org/files/ENCFF191ZBM/@@download/ENCFF191ZBM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF581JBZ bam alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF896FUL 1539824272 ENCODE Processing Pipeline ca0708a1ce1d09966b6e3753cdcd30b8 https://www.encodeproject.org/files/ENCFF581JBZ/@@download/ENCFF581JBZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF412NSD bed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF191ZBM, ENCFF561HVM 888164 ENCODE Processing Pipeline 3a0c7c38179899fdf3f4924d062cdf90 https://www.encodeproject.org/files/ENCFF412NSD/@@download/ENCFF412NSD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF981ZBT bed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF581JBZ, ENCFF962XXR 845645 ENCODE Processing Pipeline efe1b1d6ba4552347ec8ffdd19f83164 https://www.encodeproject.org/files/ENCFF981ZBT/@@download/ENCFF981ZBT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF478RWO bed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF191ZBM, ENCFF561HVM, ENCFF581JBZ, ENCFF962XXR 939559 ENCODE Processing Pipeline dcfc91f1ac62ffa4000273aa1593ddb2 https://www.encodeproject.org/files/ENCFF478RWO/@@download/ENCFF478RWO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF295GGH bigBed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF412NSD 2729892 ENCODE Processing Pipeline 60519d2789ecfe5caa668579dbab8beb https://www.encodeproject.org/files/ENCFF295GGH/@@download/ENCFF295GGH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF250FBM bigBed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF981ZBT 2605680 ENCODE Processing Pipeline 4b97750ac443f16baf5e1c92da419e5c https://www.encodeproject.org/files/ENCFF250FBM/@@download/ENCFF250FBM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF873SAE bigBed narrowPeak peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF478RWO 2794207 ENCODE Processing Pipeline 3c2621e4b7e921d63c21d093e538600c https://www.encodeproject.org/files/ENCFF873SAE/@@download/ENCFF873SAE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF105UWE bigWig signal p-value ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF191ZBM, ENCFF561HVM 529068534 ENCODE Processing Pipeline baa471f33b1a7861d8be1906ac517ff7 https://www.encodeproject.org/files/ENCFF105UWE/@@download/ENCFF105UWE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF689EDU bigWig signal p-value ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF581JBZ, ENCFF962XXR 601968042 ENCODE Processing Pipeline 967f0b0021604c267eb971abe6b55b44 https://www.encodeproject.org/files/ENCFF689EDU/@@download/ENCFF689EDU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF279KGY bigWig signal p-value ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF191ZBM, ENCFF561HVM, ENCFF581JBZ, ENCFF962XXR 1019783648 ENCODE Processing Pipeline e038db9317698b15f1bd561ef004fdd5 https://www.encodeproject.org/files/ENCFF279KGY/@@download/ENCFF279KGY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF886XST bigWig fold change over control ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF191ZBM, ENCFF561HVM 560339137 ENCODE Processing Pipeline 678c6edf40c56a55f30ab17e77416376 https://www.encodeproject.org/files/ENCFF886XST/@@download/ENCFF886XST.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF306OXZ bigWig fold change over control ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF581JBZ, ENCFF962XXR 585918353 ENCODE Processing Pipeline 223fbbab3aff6acb96e59583caf3f1cd https://www.encodeproject.org/files/ENCFF306OXZ/@@download/ENCFF306OXZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF769YBW bigWig fold change over control ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF191ZBM, ENCFF561HVM, ENCFF581JBZ, ENCFF962XXR 1108910046 ENCODE Processing Pipeline a5b314aac58388d5503331a5166ab884 https://www.encodeproject.org/files/ENCFF769YBW/@@download/ENCFF769YBW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF872YAF bed narrowPeak replicated peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF412NSD, ENCFF478RWO, ENCFF981ZBT 1033650 ENCODE Processing Pipeline 4ef3e835e8135e496ec87b5183f2f23f https://www.encodeproject.org/files/ENCFF872YAF/@@download/ENCFF872YAF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF841DKZ bigBed narrowPeak replicated peaks ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF872YAF 2278241 ENCODE Processing Pipeline 542aaeeb5f734ad8e041bc7d99283d10 https://www.encodeproject.org/files/ENCFF841DKZ/@@download/ENCFF841DKZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF930MQT fastq reads ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2324525778 Bing Ren, UCSD 202a1ed3c573a63f83e7066d5de46e4e SRA:SRR3651529 https://www.encodeproject.org/files/ENCFF930MQT/@@download/ENCFF930MQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF162EWP fastq reads ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2283585569 Bing Ren, UCSD c9c8dbe1dfdeeb0a5b928d94fc7c152b SRA:SRR3651528 https://www.encodeproject.org/files/ENCFF162EWP/@@download/ENCFF162EWP.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF459SIX bam alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF930MQT 1284067037 ENCODE Processing Pipeline fe8b3100c51adc8be27fb58acfccf727 https://www.encodeproject.org/files/ENCFF459SIX/@@download/ENCFF459SIX.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF872IZV bam alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF162EWP, ENCFF806TVZ 1274853058 ENCODE Processing Pipeline 840392ace231641a252081967391b036 https://www.encodeproject.org/files/ENCFF872IZV/@@download/ENCFF872IZV.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF536QZG bed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF872IZV 1861165 ENCODE Processing Pipeline 1efdd2679486a2f418871f6702e99bc3 https://www.encodeproject.org/files/ENCFF536QZG/@@download/ENCFF536QZG.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF080IKG bigBed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF768RBK 4728268 ENCODE Processing Pipeline 865ebaf178e40bc7f29887b8f96b8661 https://www.encodeproject.org/files/ENCFF080IKG/@@download/ENCFF080IKG.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF259EYV bed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF459SIX, ENCFF872IZV 1944317 ENCODE Processing Pipeline 834afdf453980b622d42110fd152b5af https://www.encodeproject.org/files/ENCFF259EYV/@@download/ENCFF259EYV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF768RBK bed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF459SIX 1805734 ENCODE Processing Pipeline 3d4196ab10c293a0c3468789ca1f952e https://www.encodeproject.org/files/ENCFF768RBK/@@download/ENCFF768RBK.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF350AKS bigBed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF536QZG 4892073 ENCODE Processing Pipeline 6058454e723fc6a1943a7e0eeae11864 https://www.encodeproject.org/files/ENCFF350AKS/@@download/ENCFF350AKS.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF801IPJ bigBed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF259EYV 4898489 ENCODE Processing Pipeline 9db11211f7e652fc6769a963c0ac7687 https://www.encodeproject.org/files/ENCFF801IPJ/@@download/ENCFF801IPJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF212KWP bigWig signal p-value ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF872IZV 724938853 ENCODE Processing Pipeline f6ae48b0b642d715a657801112a2d9ea https://www.encodeproject.org/files/ENCFF212KWP/@@download/ENCFF212KWP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF788BDN bigWig signal p-value ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF459SIX 605696149 ENCODE Processing Pipeline 183343c19979bd1962a982a257569f05 https://www.encodeproject.org/files/ENCFF788BDN/@@download/ENCFF788BDN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF041PSM bigWig signal p-value ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF459SIX, ENCFF872IZV 841127403 ENCODE Processing Pipeline bf9d96e1f9a1c136117888b397eba780 https://www.encodeproject.org/files/ENCFF041PSM/@@download/ENCFF041PSM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF041ONG bigWig fold change over control ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF872IZV 660240511 ENCODE Processing Pipeline b2e8216e4b6349e14f51031c468eef33 https://www.encodeproject.org/files/ENCFF041ONG/@@download/ENCFF041ONG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF186KSY bigWig fold change over control ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF459SIX 616993128 ENCODE Processing Pipeline 0e4edfda423787c7284f0bcea082a820 https://www.encodeproject.org/files/ENCFF186KSY/@@download/ENCFF186KSY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF939UNN bigBed narrowPeak replicated peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF538ICO 2887341 ENCODE Processing Pipeline 72ab572a8e81cf943b98b7a7f7491279 https://www.encodeproject.org/files/ENCFF939UNN/@@download/ENCFF939UNN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF797YID bigWig fold change over control ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF459SIX, ENCFF872IZV 1008334230 ENCODE Processing Pipeline db2b7dae8a6f17525d8105ee3c1f99e7 https://www.encodeproject.org/files/ENCFF797YID/@@download/ENCFF797YID.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF538ICO bed narrowPeak replicated peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF259EYV, ENCFF536QZG, ENCFF768RBK 1468483 ENCODE Processing Pipeline 25b626a769da59f6eab869d897dfa4a4 https://www.encodeproject.org/files/ENCFF538ICO/@@download/ENCFF538ICO.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF607WZZ bam unfiltered alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF930MQT 2579194271 ENCODE Processing Pipeline 101a2d4b51419ed3fd5d9f19236115a9 https://www.encodeproject.org/files/ENCFF607WZZ/@@download/ENCFF607WZZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF443DSD bam unfiltered alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF162EWP 2535523598 ENCODE Processing Pipeline 64106b2b6c494705345daa39b0f8962e https://www.encodeproject.org/files/ENCFF443DSD/@@download/ENCFF443DSD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF423EOT bam alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF930MQT 1283804899 ENCODE Processing Pipeline 92504c40ef7f2ba76dcf5a2e8c6e7d37 https://www.encodeproject.org/files/ENCFF423EOT/@@download/ENCFF423EOT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF458FQT bam alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF162EWP 1274569933 ENCODE Processing Pipeline f032dc3cfa2cced5e0dcfdd5067052bf https://www.encodeproject.org/files/ENCFF458FQT/@@download/ENCFF458FQT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF880ETK bed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF423EOT 1693384 ENCODE Processing Pipeline dfbeefa5a0f27abe9216c9f804e9c295 https://www.encodeproject.org/files/ENCFF880ETK/@@download/ENCFF880ETK.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF003NLS bed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF396QPU, ENCFF458FQT 1724160 ENCODE Processing Pipeline 6768c96db975b423185b7895724025f3 https://www.encodeproject.org/files/ENCFF003NLS/@@download/ENCFF003NLS.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF075OPO bed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF423EOT, ENCFF458FQT 1983026 ENCODE Processing Pipeline 05473919df25646baa6de7e830cef724 https://www.encodeproject.org/files/ENCFF075OPO/@@download/ENCFF075OPO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF697CBK bigBed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF003NLS 4555157 ENCODE Processing Pipeline 489772777fdcf50b79d1970763774f61 https://www.encodeproject.org/files/ENCFF697CBK/@@download/ENCFF697CBK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF572PKW bigBed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF880ETK 4450149 ENCODE Processing Pipeline cd5230e40cee4e02a7147da8c4f0e736 https://www.encodeproject.org/files/ENCFF572PKW/@@download/ENCFF572PKW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF958MDE bigBed narrowPeak peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF075OPO 4985504 ENCODE Processing Pipeline c035c8ee7a6508bec75b077d2ad80749 https://www.encodeproject.org/files/ENCFF958MDE/@@download/ENCFF958MDE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF394XTC bigWig signal p-value ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF396QPU, ENCFF458FQT 595460780 ENCODE Processing Pipeline e2352e271756c9e84a4bd3fba636ab01 https://www.encodeproject.org/files/ENCFF394XTC/@@download/ENCFF394XTC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF722ELJ bigWig signal p-value ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF423EOT 518838798 ENCODE Processing Pipeline 53e947c5da8926a888f5a425d7398db7 https://www.encodeproject.org/files/ENCFF722ELJ/@@download/ENCFF722ELJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF190LEN bigWig signal p-value ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF423EOT, ENCFF458FQT 1066787672 ENCODE Processing Pipeline 0bc6602c3541b24575a589c2abb755a9 https://www.encodeproject.org/files/ENCFF190LEN/@@download/ENCFF190LEN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF051DUM bigWig fold change over control ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF396QPU, ENCFF458FQT 545509122 ENCODE Processing Pipeline 8f244220870382807f10115f0f4898d1 https://www.encodeproject.org/files/ENCFF051DUM/@@download/ENCFF051DUM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF338WOF bigWig fold change over control ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF423EOT 553960258 ENCODE Processing Pipeline 8efc9fc64a2e14d5d705e542874173f2 https://www.encodeproject.org/files/ENCFF338WOF/@@download/ENCFF338WOF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF289PYS bigWig fold change over control ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF423EOT, ENCFF458FQT 1068627005 ENCODE Processing Pipeline 8681966eb5eeefdc58ead2f02d9b05a3 https://www.encodeproject.org/files/ENCFF289PYS/@@download/ENCFF289PYS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF682NDH bigBed narrowPeak replicated peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF196WCO 2761381 ENCODE Processing Pipeline a80a1a7a44d6f336ee0c4828d388b871 https://www.encodeproject.org/files/ENCFF682NDH/@@download/ENCFF682NDH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF196WCO bed narrowPeak replicated peaks ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF003NLS, ENCFF075OPO, ENCFF880ETK 1408363 ENCODE Processing Pipeline 5d116840ceed5df1996b43773dcc3804 https://www.encodeproject.org/files/ENCFF196WCO/@@download/ENCFF196WCO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001KXY bigBed broadPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZM 337920 Bing Ren, UCSD 7d1a458b4f0d2acbe1c056e83449e257 https://www.encodeproject.org/files/ENCFF001KXY/@@download/ENCFF001KXY.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KXZ bam alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KYH 1521604525 Bing Ren, UCSD ccfb49e20022bcab5c4eb1b408952d2c https://www.encodeproject.org/files/ENCFF001KXZ/@@download/ENCFF001KXZ.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KYA bam alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KYL 1458095921 Bing Ren, UCSD 50bad0198d5c866719dca610b15726f3 https://www.encodeproject.org/files/ENCFF001KYA/@@download/ENCFF001KYA.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KYB bigWig signal ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KXZ, ENCFF001KYA 78582368 Bing Ren, UCSD b5538f588b27fc74665d2921e2c9b162 https://www.encodeproject.org/files/ENCFF001KYB/@@download/ENCFF001KYB.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KYH fastq reads ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1487989134 Bing Ren, UCSD 40ab68184c333b228eaa3bac63ab515f https://www.encodeproject.org/files/ENCFF001KYH/@@download/ENCFF001KYH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001KYL fastq reads ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1508487581 Bing Ren, UCSD 8855ac5b14363b6a4ad7ca873f49ad6b https://www.encodeproject.org/files/ENCFF001KYL/@@download/ENCFF001KYL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001XZM bed broadPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KXZ, ENCFF001KYA 156091 Bing Ren, UCSD 58b51b0f444f473859d31e1a7b4f309d https://www.encodeproject.org/files/ENCFF001XZM/@@download/ENCFF001XZM.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF329AQK bam unfiltered alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KYH, ENCFF018NEO 1665761343 ENCODE Processing Pipeline 29be9230900e17e4d10b1b7b6fbca2f0 https://www.encodeproject.org/files/ENCFF329AQK/@@download/ENCFF329AQK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF369JUB bam alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KYH, ENCFF018NEO 850034222 ENCODE Processing Pipeline 85bacf243a5649e95188515821dee70e https://www.encodeproject.org/files/ENCFF369JUB/@@download/ENCFF369JUB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF883ZWJ bed narrowPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF283CTW, ENCFF347BCY, ENCFF369JUB 1121820 ENCODE Processing Pipeline f8144516460fab79e40c9f3ad582c1de https://www.encodeproject.org/files/ENCFF883ZWJ/@@download/ENCFF883ZWJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF370HMP bigBed narrowPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF883ZWJ 2237290 ENCODE Processing Pipeline 036bb01dd465c7341f91afd24b881b46 https://www.encodeproject.org/files/ENCFF370HMP/@@download/ENCFF370HMP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF015MRO bigWig signal p-value ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF283CTW, ENCFF347BCY, ENCFF369JUB 371151128 ENCODE Processing Pipeline 957983badf34fed638c4a19040631e96 https://www.encodeproject.org/files/ENCFF015MRO/@@download/ENCFF015MRO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF417UWJ bigWig fold change over control ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF283CTW, ENCFF347BCY, ENCFF369JUB 339761391 ENCODE Processing Pipeline 7819921f6530fa5f321eae00eb56d2a8 https://www.encodeproject.org/files/ENCFF417UWJ/@@download/ENCFF417UWJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF111ALG bam unfiltered alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KYL, ENCFF018NEO 1167037447 ENCODE Processing Pipeline bdaeab55e9727112e325d022bafb86c1 https://www.encodeproject.org/files/ENCFF111ALG/@@download/ENCFF111ALG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF135BIZ bam alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KYL, ENCFF018NEO 247916746 ENCODE Processing Pipeline aeced48f53b9ed70a6560d307486f12b https://www.encodeproject.org/files/ENCFF135BIZ/@@download/ENCFF135BIZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF482PSK bed narrowPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF135BIZ, ENCFF347BCY 1337216 ENCODE Processing Pipeline 673b41ce265e0e088e6817f97c14f529 https://www.encodeproject.org/files/ENCFF482PSK/@@download/ENCFF482PSK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF107XKQ bed narrowPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF135BIZ, ENCFF283CTW, ENCFF347BCY, ENCFF369JUB 555432 ENCODE Processing Pipeline 2904488224b455e2400fd6c81ed57b77 https://www.encodeproject.org/files/ENCFF107XKQ/@@download/ENCFF107XKQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF053DWL bigBed narrowPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF482PSK 2827817 ENCODE Processing Pipeline 9047b2a1db31a352fd125a7902d4467d https://www.encodeproject.org/files/ENCFF053DWL/@@download/ENCFF053DWL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF742NSW bigBed narrowPeak peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF107XKQ 1446373 ENCODE Processing Pipeline a269cb26a39f80235d3f62cb93c652d2 https://www.encodeproject.org/files/ENCFF742NSW/@@download/ENCFF742NSW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF244LUP bigWig signal p-value ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF135BIZ, ENCFF347BCY 174770694 ENCODE Processing Pipeline 3f445c595c2ad7d5cd64cb854ff5bbdb https://www.encodeproject.org/files/ENCFF244LUP/@@download/ENCFF244LUP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF795SRA bigWig signal p-value ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF135BIZ, ENCFF283CTW, ENCFF347BCY, ENCFF369JUB 439260887 ENCODE Processing Pipeline a5ebbdec44f881a18560b3d25a7d64da https://www.encodeproject.org/files/ENCFF795SRA/@@download/ENCFF795SRA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF075QKU bigWig fold change over control ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF135BIZ, ENCFF347BCY 112220894 ENCODE Processing Pipeline a279491b5257de50fd25d462809fe938 https://www.encodeproject.org/files/ENCFF075QKU/@@download/ENCFF075QKU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF476YTS bigWig fold change over control ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF135BIZ, ENCFF283CTW, ENCFF347BCY, ENCFF369JUB 422013954 ENCODE Processing Pipeline 387b001e175f88953dd87da664a54c12 https://www.encodeproject.org/files/ENCFF476YTS/@@download/ENCFF476YTS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF478UYW bed narrowPeak replicated peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF107XKQ, ENCFF482PSK, ENCFF883ZWJ 322279 ENCODE Processing Pipeline 73d8cb02342a78cf2affd089579b9b91 https://www.encodeproject.org/files/ENCFF478UYW/@@download/ENCFF478UYW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF257ZCY bigBed narrowPeak replicated peaks ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF478UYW 743883 ENCODE Processing Pipeline 54c076c8ac6654bbb7ba04a3f729ad67 https://www.encodeproject.org/files/ENCFF257ZCY/@@download/ENCFF257ZCY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF001JYW bam alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001JZE 420848540 Bing Ren, UCSD 03548767fe2481277d3d5b7d342cf834 https://www.encodeproject.org/files/ENCFF001JYW/@@download/ENCFF001JYW.bam mm9 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF001JYX bam alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001JZL 1016720812 Bing Ren, UCSD 0ea34de484e14aa50e1cb6096d760ab2 https://www.encodeproject.org/files/ENCFF001JYX/@@download/ENCFF001JYX.bam mm9 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF001JYZ bigWig signal ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001JYW, ENCFF001JYX 74005241 Bing Ren, UCSD 7fd233de5cd70511023b93d183712f0d https://www.encodeproject.org/files/ENCFF001JYZ/@@download/ENCFF001JYZ.bigWig mm9 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF001JZE fastq reads ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 394295675 Bing Ren, UCSD 39af63acbc5308e7d404333ebee640ea https://www.encodeproject.org/files/ENCFF001JZE/@@download/ENCFF001JZE.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF001JZL fastq reads ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 45 single-ended 972787770 Bing Ren, UCSD 4480896e9c8dc7293ebc3f7ccce84b62 https://www.encodeproject.org/files/ENCFF001JZL/@@download/ENCFF001JZL.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF691MRC bam unfiltered alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001JZL, ENCFF806TVZ 1097328699 J. Michael Cherry, Stanford 99a82787e2ecc3e950f02e5e7ea0e26b https://www.encodeproject.org/files/ENCFF691MRC/@@download/ENCFF691MRC.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth ENCFF928CZJ bam unfiltered alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001JZE, ENCFF806TVZ 475162808 J. Michael Cherry, Stanford 5c8918bc551f896403485f57463260f5 https://www.encodeproject.org/files/ENCFF928CZJ/@@download/ENCFF928CZJ.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth ENCFF436OKP bam alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001JZE, ENCFF018NEO 328418920 ENCODE Processing Pipeline 28b5e6d89f174212084efd8ba860e672 https://www.encodeproject.org/files/ENCFF436OKP/@@download/ENCFF436OKP.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF265OGU bam unfiltered alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001JZE, ENCFF018NEO 476151338 ENCODE Processing Pipeline db4c2024d26dc5377c17bad4c321986d https://www.encodeproject.org/files/ENCFF265OGU/@@download/ENCFF265OGU.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF380RIM bam alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001JZL, ENCFF018NEO 633186768 ENCODE Processing Pipeline 978da62059b297ff6f8f9ea78576da40 https://www.encodeproject.org/files/ENCFF380RIM/@@download/ENCFF380RIM.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF262IDB bam unfiltered alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001JZL, ENCFF018NEO 948944387 ENCODE Processing Pipeline dbc960cfc2735cee9f6fd883d02e9222 https://www.encodeproject.org/files/ENCFF262IDB/@@download/ENCFF262IDB.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF001KVP bam alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KVR 821729717 Bing Ren, UCSD 105e46459ce0e640f8fdbdb40aa2ac50 https://www.encodeproject.org/files/ENCFF001KVP/@@download/ENCFF001KVP.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF001KVQ bam alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KWE 959339811 Bing Ren, UCSD 45fca209125f846fa60caefffb07d448 https://www.encodeproject.org/files/ENCFF001KVQ/@@download/ENCFF001KVQ.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF001KVR fastq reads ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 886019922 Bing Ren, UCSD e0f271084fed9038c1f5c224e2857985 https://www.encodeproject.org/files/ENCFF001KVR/@@download/ENCFF001KVR.fastq.gz Illumina Genome Analyzer II released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF001KVU bigWig signal ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001KVP, ENCFF001KVQ 76591243 Bing Ren, UCSD 9380ce48fa05cce34c4126c6b82b5b7c https://www.encodeproject.org/files/ENCFF001KVU/@@download/ENCFF001KVU.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF001KWE fastq reads ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 30 single-ended 920088653 Bing Ren, UCSD e230080184bc232569ae1db500dd4e0f https://www.encodeproject.org/files/ENCFF001KWE/@@download/ENCFF001KWE.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF799VCF bam unfiltered alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KWE, ENCFF806TVZ 1054584682 J. Michael Cherry, Stanford 0d829e5c758f622a31eeba3353c95169 https://www.encodeproject.org/files/ENCFF799VCF/@@download/ENCFF799VCF.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF686TAK bam unfiltered alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KVR, ENCFF806TVZ 1068896402 J. Michael Cherry, Stanford 8dbb67054b68be0005d6109af1f5bc6b https://www.encodeproject.org/files/ENCFF686TAK/@@download/ENCFF686TAK.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF283OEI bam unfiltered alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001KWE, ENCFF018NEO 1056317538 ENCODE Processing Pipeline 9313125b8955385c2dc81bce50f15fe3 https://www.encodeproject.org/files/ENCFF283OEI/@@download/ENCFF283OEI.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF705BZU bam alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001KWE, ENCFF018NEO 529876577 ENCODE Processing Pipeline c8d224a0ef4b0d26f81369a58d8cb6b1 https://www.encodeproject.org/files/ENCFF705BZU/@@download/ENCFF705BZU.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF713QUP bam unfiltered alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001KVR, ENCFF018NEO 999898685 ENCODE Processing Pipeline b8c067091f1c2760d188d6f6c36f81b9 https://www.encodeproject.org/files/ENCFF713QUP/@@download/ENCFF713QUP.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF314OGN bam alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001KVR, ENCFF018NEO 581800730 ENCODE Processing Pipeline 3fc7a4e52692ef44cd1e5cd0533a5bd9 https://www.encodeproject.org/files/ENCFF314OGN/@@download/ENCFF314OGN.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF001NHX bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NIA 590662173 Michael Snyder, Stanford f31c0d4472d4bee1390fe31670f0701c https://www.encodeproject.org/files/ENCFF001NHX/@@download/ENCFF001NHX.bam mm9 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF001NHY bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NIC 588675355 Michael Snyder, Stanford e8a318fb57a9d18e199f6548e70f9c7c https://www.encodeproject.org/files/ENCFF001NHY/@@download/ENCFF001NHY.bam mm9 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF001NHZ bigBed narrowPeak peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIC 1645969 Michael Snyder, Stanford 185a62ce716bb0d89468665721d90343 https://www.encodeproject.org/files/ENCFF001NHZ/@@download/ENCFF001NHZ.bigBed mm9 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF001NIA fastq reads ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1310165379 Michael Snyder, Stanford f62994515a5d09a7d293452cadbc72da https://www.encodeproject.org/files/ENCFF001NIA/@@download/ENCFF001NIA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF001NIC fastq reads ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1254153649 Michael Snyder, Stanford 96dfb01dab77c3fc0f454e57f2414bef https://www.encodeproject.org/files/ENCFF001NIC/@@download/ENCFF001NIC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF001NIE bigWig signal ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHX, ENCFF001NHY 396825105 Michael Snyder, Stanford 4cc384ca1d7ac98eb1d4b674e4950cd3 https://www.encodeproject.org/files/ENCFF001NIE/@@download/ENCFF001NIE.bigWig mm9 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF001YIC bed narrowPeak peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NHX, ENCFF001NHY 749006 Michael Snyder, Stanford fced0886cd2904895d00f09ec4ccd83c https://www.encodeproject.org/files/ENCFF001YIC/@@download/ENCFF001YIC.bed.gz mm9 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF978KHB bam unfiltered alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIA, ENCFF018NEO 1447206869 ENCODE Processing Pipeline c304c4e0099f3f23f30220ff8ec0a017 https://www.encodeproject.org/files/ENCFF978KHB/@@download/ENCFF978KHB.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF228URL bam unfiltered alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIC, ENCFF018NEO 1366205442 ENCODE Processing Pipeline b597776b7851827fa3a9d3429bddc42b https://www.encodeproject.org/files/ENCFF228URL/@@download/ENCFF228URL.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF293AUO bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIC, ENCFF018NEO 905656227 ENCODE Processing Pipeline d326cb709ade95966e3e65ccc63d165b https://www.encodeproject.org/files/ENCFF293AUO/@@download/ENCFF293AUO.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF803DOV bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIA, ENCFF018NEO 963917869 ENCODE Processing Pipeline 50498abb57016ec11e2eff4dc4c7dcda https://www.encodeproject.org/files/ENCFF803DOV/@@download/ENCFF803DOV.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF928VVV bigWig signal p-value ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF803DOV 208636834 ENCODE Processing Pipeline f640b4e3cc9b157ba71143da65899b77 https://www.encodeproject.org/files/ENCFF928VVV/@@download/ENCFF928VVV.bigWig mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF832LUX bigWig signal p-value ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF293AUO, ENCFF339ZWC 224343307 ENCODE Processing Pipeline 58b74337d3c4795e471c01ae1732e8ce https://www.encodeproject.org/files/ENCFF832LUX/@@download/ENCFF832LUX.bigWig mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF367AWT bigWig fold change over control ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF803DOV 333683640 ENCODE Processing Pipeline 718c6f54a5860f2503df6eb9651ecde9 https://www.encodeproject.org/files/ENCFF367AWT/@@download/ENCFF367AWT.bigWig mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF560XBX bigWig fold change over control ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF293AUO, ENCFF339ZWC 355040834 ENCODE Processing Pipeline 317f0efabb464f2280697c8c04739f35 https://www.encodeproject.org/files/ENCFF560XBX/@@download/ENCFF560XBX.bigWig mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF339HVI bigWig signal p-value ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293AUO, ENCFF339ZWC, ENCFF803DOV 207770797 ENCODE Processing Pipeline 5aa19f8e5d7a841682de928e75e12c51 https://www.encodeproject.org/files/ENCFF339HVI/@@download/ENCFF339HVI.bigWig mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF727IMP bigWig fold change over control ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293AUO, ENCFF339ZWC, ENCFF803DOV 582649211 ENCODE Processing Pipeline 939940342239728a7c3bed62cfc69727 https://www.encodeproject.org/files/ENCFF727IMP/@@download/ENCFF727IMP.bigWig mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF085OPN bed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF293AUO, ENCFF339ZWC 5108009 ENCODE Processing Pipeline c1dfd0682127396f17845a69cc0e0a89 https://www.encodeproject.org/files/ENCFF085OPN/@@download/ENCFF085OPN.bed.gz mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF809MLM bed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF803DOV 727827 ENCODE Processing Pipeline 9d318318395664f4b1fa8ad6e6a7542c https://www.encodeproject.org/files/ENCFF809MLM/@@download/ENCFF809MLM.bed.gz mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF893RVJ bed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF293AUO, ENCFF339ZWC, ENCFF803DOV 5558563 ENCODE Processing Pipeline 896573cde8923b67af7db21b8ceebfa5 https://www.encodeproject.org/files/ENCFF893RVJ/@@download/ENCFF893RVJ.bed.gz mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF740QUU bigBed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF085OPN 12838801 ENCODE Processing Pipeline 9e09913eb88b771641bf7ee1d3678f20 https://www.encodeproject.org/files/ENCFF740QUU/@@download/ENCFF740QUU.bigBed mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF071ZOF bigBed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF809MLM 1495665 ENCODE Processing Pipeline 712adac00986713ab4630495b18f5765 https://www.encodeproject.org/files/ENCFF071ZOF/@@download/ENCFF071ZOF.bigBed mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF441WRA bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF981BEO 348030 ENCODE Processing Pipeline 3da1b3d06e4711067549e4baaf41f700 https://www.encodeproject.org/files/ENCFF441WRA/@@download/ENCFF441WRA.bigBed mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF290WGR bed narrowPeak optimal idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF085OPN, ENCFF547MET, ENCFF809MLM, ENCFF893RVJ 390830 ENCODE Processing Pipeline d64150a52d887cc55594e77461446ee1 https://www.encodeproject.org/files/ENCFF290WGR/@@download/ENCFF290WGR.bed.gz mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF981BEO bed narrowPeak conservative idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF085OPN, ENCFF547MET, ENCFF809MLM, ENCFF893RVJ 161055 ENCODE Processing Pipeline df3cd6f24fb98203357477bd0b45f7ca https://www.encodeproject.org/files/ENCFF981BEO/@@download/ENCFF981BEO.bed.gz mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF570FCS bigBed narrowPeak peaks and background as input for IDR ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF893RVJ 13072106 ENCODE Processing Pipeline 46dfb104d0204ecec37c4876888e2e85 https://www.encodeproject.org/files/ENCFF570FCS/@@download/ENCFF570FCS.bigBed mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF095OCE bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF290WGR 672537 ENCODE Processing Pipeline 70cad92a9d985fa5d1f921cd8e3edc1f https://www.encodeproject.org/files/ENCFF095OCE/@@download/ENCFF095OCE.bigBed mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF002AHM fastq reads ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1214340370 Bing Ren, UCSD 6a503825395af0dd9effb9633fe84c66 SRA:SRR3653363 https://www.encodeproject.org/files/ENCFF002AHM/@@download/ENCFF002AHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARI/ released low read length insufficient read depth, control insufficient read depth ENCFF002AHN fastq reads ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1266415354 Bing Ren, UCSD e0d02ec8558489833252a2fe29256d9c SRA:SRR3653364 https://www.encodeproject.org/files/ENCFF002AHN/@@download/ENCFF002AHN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARL/ released low read length insufficient read depth, control insufficient read depth ENCFF839KDL bam alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHM, ENCFF806TVZ 904146943 ENCODE Processing Pipeline 355e635e3cb8363bbe45313dcedf1acf https://www.encodeproject.org/files/ENCFF839KDL/@@download/ENCFF839KDL.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF470CYC bam alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHN, ENCFF806TVZ 954784766 ENCODE Processing Pipeline 9d3e3165d2bcec9e1f91343f98354e2a https://www.encodeproject.org/files/ENCFF470CYC/@@download/ENCFF470CYC.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF961AEI bed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF839KDL, ENCFF946XCS 234433 ENCODE Processing Pipeline 4f4ae5820d41c04577f6ebbfa3f2abd4 https://www.encodeproject.org/files/ENCFF961AEI/@@download/ENCFF961AEI.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF917VPR bigBed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF947XYV 1202925 ENCODE Processing Pipeline c718210c203b54886a14a50780dc8ea6 https://www.encodeproject.org/files/ENCFF917VPR/@@download/ENCFF917VPR.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF910IIR bigBed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF497EHW 557240 ENCODE Processing Pipeline 99b4756780c71d82dc1ac286fdb4848d https://www.encodeproject.org/files/ENCFF910IIR/@@download/ENCFF910IIR.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF947XYV bed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF470CYC, ENCFF946XCS 576267 ENCODE Processing Pipeline 19ebb0698f985b6047264164496c6b41 https://www.encodeproject.org/files/ENCFF947XYV/@@download/ENCFF947XYV.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF497EHW bed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF470CYC, ENCFF839KDL, ENCFF946XCS 215843 ENCODE Processing Pipeline 80b8c53fb48cde61c1c195af24114521 https://www.encodeproject.org/files/ENCFF497EHW/@@download/ENCFF497EHW.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF931LLD bigBed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF961AEI 517230 ENCODE Processing Pipeline afc2403364f9ff734367650051423fe4 https://www.encodeproject.org/files/ENCFF931LLD/@@download/ENCFF931LLD.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF713UBO bigWig signal p-value ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF839KDL, ENCFF946XCS 457526618 ENCODE Processing Pipeline 5341bee218a297755fed7286959726ba https://www.encodeproject.org/files/ENCFF713UBO/@@download/ENCFF713UBO.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF250TZI bigWig signal p-value ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF470CYC, ENCFF946XCS 381301758 ENCODE Processing Pipeline ea6d3c64d50b8b0e089d064f0f623db1 https://www.encodeproject.org/files/ENCFF250TZI/@@download/ENCFF250TZI.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF602XBN bigWig signal p-value ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF470CYC, ENCFF839KDL, ENCFF946XCS 607725530 ENCODE Processing Pipeline 67544dc8f3d90afd9987b185a4aa4b3c https://www.encodeproject.org/files/ENCFF602XBN/@@download/ENCFF602XBN.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF769BID bigWig fold change over control ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF839KDL, ENCFF946XCS 433251958 ENCODE Processing Pipeline 02fc8645cf8468b37f07b913293ccb92 https://www.encodeproject.org/files/ENCFF769BID/@@download/ENCFF769BID.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF311YNU bigWig fold change over control ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF470CYC, ENCFF946XCS 457217543 ENCODE Processing Pipeline 09ceb314fc5f40afb59366c9e6d8cded https://www.encodeproject.org/files/ENCFF311YNU/@@download/ENCFF311YNU.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF163TCD bigWig fold change over control ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF470CYC, ENCFF839KDL, ENCFF946XCS 692874942 ENCODE Processing Pipeline f1641f1df51a02cf3eae6e0607178d71 https://www.encodeproject.org/files/ENCFF163TCD/@@download/ENCFF163TCD.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF768NCW bed narrowPeak replicated peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF497EHW, ENCFF947XYV, ENCFF961AEI 113977 ENCODE Processing Pipeline 5f808d0823d83fe33d2e393c0aead256 https://www.encodeproject.org/files/ENCFF768NCW/@@download/ENCFF768NCW.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF333ZYW bigBed narrowPeak replicated peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF768NCW 324376 ENCODE Processing Pipeline d1b065b78dd4ab6260fa3964fc905b61 https://www.encodeproject.org/files/ENCFF333ZYW/@@download/ENCFF333ZYW.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF103KZX bam unfiltered alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHN, ENCFF018NEO 1397315829 ENCODE Processing Pipeline 7cbf3f4ebadaa50ca77e3469295c502f https://www.encodeproject.org/files/ENCFF103KZX/@@download/ENCFF103KZX.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF652NBI bam unfiltered alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHM, ENCFF018NEO 1338119018 ENCODE Processing Pipeline 0df3451a346592c6a7659a93f70b8144 https://www.encodeproject.org/files/ENCFF652NBI/@@download/ENCFF652NBI.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF503EBL bam alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHM, ENCFF018NEO 903839319 ENCODE Processing Pipeline 4322f8cbcc25d0dc5de7131d5178bc15 https://www.encodeproject.org/files/ENCFF503EBL/@@download/ENCFF503EBL.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF062TRB bam alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHN, ENCFF018NEO 954521473 ENCODE Processing Pipeline 4a39d4665867eeabb4f298f4f2736b72 https://www.encodeproject.org/files/ENCFF062TRB/@@download/ENCFF062TRB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF911QZL bed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF062TRB, ENCFF482UTL 196956 ENCODE Processing Pipeline 7f04cb8b3e39ccbde0cafde8bcf0f2ae https://www.encodeproject.org/files/ENCFF911QZL/@@download/ENCFF911QZL.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF326BUD bed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF503EBL 236671 ENCODE Processing Pipeline fe44ae5ed042d548bb425e28a751f92b https://www.encodeproject.org/files/ENCFF326BUD/@@download/ENCFF326BUD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF140LBU bed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF062TRB, ENCFF292SSW, ENCFF482UTL, ENCFF503EBL 205607 ENCODE Processing Pipeline b9222f01dc699dedd6a28337881b2957 https://www.encodeproject.org/files/ENCFF140LBU/@@download/ENCFF140LBU.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF186QLI bigBed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF911QZL 552380 ENCODE Processing Pipeline 31825c7dbb2aeea73177ef5694eae930 https://www.encodeproject.org/files/ENCFF186QLI/@@download/ENCFF186QLI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF900RNT bigBed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF326BUD 521676 ENCODE Processing Pipeline a893780c941b956d614758e4df5e59d1 https://www.encodeproject.org/files/ENCFF900RNT/@@download/ENCFF900RNT.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF721DDZ bigBed narrowPeak peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF140LBU 533618 ENCODE Processing Pipeline 2781142713ed5a0a6ab9e72695da8245 https://www.encodeproject.org/files/ENCFF721DDZ/@@download/ENCFF721DDZ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF240HFN bigWig signal p-value ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF503EBL 435463349 ENCODE Processing Pipeline e3c4960fc43733ecc566e88b7c4c90e9 https://www.encodeproject.org/files/ENCFF240HFN/@@download/ENCFF240HFN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF636MSP bigWig signal p-value ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF062TRB, ENCFF482UTL 314525140 ENCODE Processing Pipeline 5f384f87278704578f98734931244fc8 https://www.encodeproject.org/files/ENCFF636MSP/@@download/ENCFF636MSP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF580FXQ bigWig signal p-value ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF062TRB, ENCFF292SSW, ENCFF482UTL, ENCFF503EBL 612528877 ENCODE Processing Pipeline c340cb4704e0262719d7babe741b4ae6 https://www.encodeproject.org/files/ENCFF580FXQ/@@download/ENCFF580FXQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF496VDO bigWig fold change over control ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF503EBL 433466735 ENCODE Processing Pipeline 56c907a45a3b5b91584a6616fc220478 https://www.encodeproject.org/files/ENCFF496VDO/@@download/ENCFF496VDO.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF300CFV bigWig fold change over control ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF062TRB, ENCFF482UTL 367965639 ENCODE Processing Pipeline ccc5153254620278ed60a51da7034f79 https://www.encodeproject.org/files/ENCFF300CFV/@@download/ENCFF300CFV.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF587CHP bigWig fold change over control ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF062TRB, ENCFF292SSW, ENCFF482UTL, ENCFF503EBL 696094796 ENCODE Processing Pipeline 92e19cf40b04f757d7f39336c4dfbba5 https://www.encodeproject.org/files/ENCFF587CHP/@@download/ENCFF587CHP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF549MVD bed narrowPeak replicated peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF140LBU, ENCFF326BUD, ENCFF911QZL 98983 ENCODE Processing Pipeline ab00fb505e6c85133eb9beb3f70ccdc1 https://www.encodeproject.org/files/ENCFF549MVD/@@download/ENCFF549MVD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF027QVR bigBed narrowPeak replicated peaks ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF549MVD 292726 ENCODE Processing Pipeline 1ee712d77f608edb254158eab52f58cc https://www.encodeproject.org/files/ENCFF027QVR/@@download/ENCFF027QVR.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001NGX bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NGZ 545197453 Michael Snyder, Stanford b59520ab5f7fc19afe47b3ba19059c1b https://www.encodeproject.org/files/ENCFF001NGX/@@download/ENCFF001NGX.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NGY bigBed narrowPeak peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YHZ 659798 Michael Snyder, Stanford d08ddd61f6f127654a510165a8c06ab1 https://www.encodeproject.org/files/ENCFF001NGY/@@download/ENCFF001NGY.bigBed mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NGZ fastq reads ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 990815467 Michael Snyder, Stanford dd8c2ecf15a343ff6f891260e9be65c2 https://www.encodeproject.org/files/ENCFF001NGZ/@@download/ENCFF001NGZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NHB fastq reads ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1158186924 Michael Snyder, Stanford c87b908d060998922e6eba92feeaf437 https://www.encodeproject.org/files/ENCFF001NHB/@@download/ENCFF001NHB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NHD bigWig signal ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NGX, ENCFF001NHE 386555919 Michael Snyder, Stanford 88536296ef5f4825c5e85cd893814818 https://www.encodeproject.org/files/ENCFF001NHD/@@download/ENCFF001NHD.bigWig mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NHE bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NHB 600759755 Michael Snyder, Stanford 3a8add0e84e56f5ba3a003fd65884267 https://www.encodeproject.org/files/ENCFF001NHE/@@download/ENCFF001NHE.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001YHZ bed narrowPeak peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NGX, ENCFF001NHE 297304 Michael Snyder, Stanford d35b5cac99da3b8a583439ed5aa3bda7 https://www.encodeproject.org/files/ENCFF001YHZ/@@download/ENCFF001YHZ.bed.gz mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF210MOO bam unfiltered alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHB, ENCFF018NEO 1308788829 ENCODE Processing Pipeline 89f3f23bee52f8f97bb4c608b6c4a198 https://www.encodeproject.org/files/ENCFF210MOO/@@download/ENCFF210MOO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF271WNO bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHB, ENCFF018NEO 887607689 ENCODE Processing Pipeline dd670eda7de552e256f5455cc74a5b95 https://www.encodeproject.org/files/ENCFF271WNO/@@download/ENCFF271WNO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF545NCO bam unfiltered alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NGZ, ENCFF018NEO 1107426408 ENCODE Processing Pipeline 2f27deb3469eb018dbb0630a36ff0e40 https://www.encodeproject.org/files/ENCFF545NCO/@@download/ENCFF545NCO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF552KJL bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NGZ, ENCFF018NEO 785473760 ENCODE Processing Pipeline 22e41dfd0cc88ef28ef1ab0cdf9defe1 https://www.encodeproject.org/files/ENCFF552KJL/@@download/ENCFF552KJL.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF320XHF bigWig fold change over control ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF552KJL 310659765 ENCODE Processing Pipeline 986f5d8252b985b7bb644c1c2b37f9fa https://www.encodeproject.org/files/ENCFF320XHF/@@download/ENCFF320XHF.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF349HNU bigWig signal p-value ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF271WNO, ENCFF339ZWC 207425973 ENCODE Processing Pipeline 7fd6c604d0dfc6f4a5b1606bef251acd https://www.encodeproject.org/files/ENCFF349HNU/@@download/ENCFF349HNU.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF883NTS bigWig signal p-value ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF552KJL 246039627 ENCODE Processing Pipeline 67943ac8e2b6b66c7ff7692fd1173ad0 https://www.encodeproject.org/files/ENCFF883NTS/@@download/ENCFF883NTS.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF136MMK bigWig signal p-value ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF271WNO, ENCFF339ZWC, ENCFF552KJL 230682579 ENCODE Processing Pipeline 9c0afbce8fb2328444c31f4d4b9b3fe3 https://www.encodeproject.org/files/ENCFF136MMK/@@download/ENCFF136MMK.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF585PZU bed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF552KJL 577645 ENCODE Processing Pipeline 0c51edb0c55b2e35902f368de1b1b0a7 https://www.encodeproject.org/files/ENCFF585PZU/@@download/ENCFF585PZU.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF679YBA bigWig fold change over control ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF271WNO, ENCFF339ZWC 338999963 ENCODE Processing Pipeline 42ac383bb22e3f61227086d3f0c84329 https://www.encodeproject.org/files/ENCFF679YBA/@@download/ENCFF679YBA.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF835AUM bigWig fold change over control ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF271WNO, ENCFF339ZWC, ENCFF552KJL 564170799 ENCODE Processing Pipeline 6ce317680ec85ccf0d5e50bbf9330f27 https://www.encodeproject.org/files/ENCFF835AUM/@@download/ENCFF835AUM.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF456RMG bed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF271WNO, ENCFF339ZWC, ENCFF552KJL 5317635 ENCODE Processing Pipeline 93202eb5f7ea660dc7ff1e0727e22304 https://www.encodeproject.org/files/ENCFF456RMG/@@download/ENCFF456RMG.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF964IQI bigBed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF585PZU 1342767 ENCODE Processing Pipeline 43d0ba543ef30d2655911f8234079f36 https://www.encodeproject.org/files/ENCFF964IQI/@@download/ENCFF964IQI.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF519AAU bed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF271WNO, ENCFF339ZWC 4680678 ENCODE Processing Pipeline f54a41c29d5ea056518e63ce7fea92cf https://www.encodeproject.org/files/ENCFF519AAU/@@download/ENCFF519AAU.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF827RNT bigBed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF519AAU 10603038 ENCODE Processing Pipeline 14f2fc8664cf90b1342f08a28c6d8797 https://www.encodeproject.org/files/ENCFF827RNT/@@download/ENCFF827RNT.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF057ZCS bigBed narrowPeak peaks and background as input for IDR ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456RMG 12979780 ENCODE Processing Pipeline 5648a13beb00db1c3493d40878a936d8 https://www.encodeproject.org/files/ENCFF057ZCS/@@download/ENCFF057ZCS.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF199RWK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF578TRR 226946 ENCODE Processing Pipeline 731cb01c3e45210d312af64bce4544bc https://www.encodeproject.org/files/ENCFF199RWK/@@download/ENCFF199RWK.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF578TRR bed narrowPeak conservative idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456RMG, ENCFF519AAU, ENCFF547MET, ENCFF585PZU 92251 ENCODE Processing Pipeline d4370dcf896ada23f7e623131103c44b https://www.encodeproject.org/files/ENCFF578TRR/@@download/ENCFF578TRR.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF305FHK bed narrowPeak optimal idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456RMG, ENCFF519AAU, ENCFF547MET, ENCFF585PZU 225029 ENCODE Processing Pipeline 62f34e97c52ee49f5b5bc81d182f5407 https://www.encodeproject.org/files/ENCFF305FHK/@@download/ENCFF305FHK.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF884IGX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF305FHK 497705 ENCODE Processing Pipeline 9fee190f18a264b53d8affec03a67e82 https://www.encodeproject.org/files/ENCFF884IGX/@@download/ENCFF884IGX.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF002AIK fastq reads ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 992790435 Bing Ren, UCSD 37f11d74e64a1011dac3d8ebf34ac579 SRA:SRR3652166 https://www.encodeproject.org/files/ENCFF002AIK/@@download/ENCFF002AIK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQX/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AIO fastq reads ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2067530598 Bing Ren, UCSD fdc912d25d17e5360401722901284c31 SRA:SRR3652165 https://www.encodeproject.org/files/ENCFF002AIO/@@download/ENCFF002AIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQT/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF359RLE bam alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIO, ENCFF806TVZ 1532180096 ENCODE Processing Pipeline d1d54dfa59acee9ace800714084e33f0 https://www.encodeproject.org/files/ENCFF359RLE/@@download/ENCFF359RLE.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF868WED fastq reads ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 537322009 Bing Ren, UCSD 1dd7abeae03cfaec474e5c5f6c2d3579 SRA:SRR3652167 https://www.encodeproject.org/files/ENCFF868WED/@@download/ENCFF868WED.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQX/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF646BRW bam alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIK, ENCFF806TVZ, ENCFF868WED 1326390139 ENCODE Processing Pipeline d25799384aea89057078a1aaff662eb6 https://www.encodeproject.org/files/ENCFF646BRW/@@download/ENCFF646BRW.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF016PNE bed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF359RLE, ENCFF431MET 1848512 ENCODE Processing Pipeline 59c557c0da4c59739af5494c2a43aa12 https://www.encodeproject.org/files/ENCFF016PNE/@@download/ENCFF016PNE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF609JVH bigWig signal p-value ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF359RLE, ENCFF431MET 510397101 ENCODE Processing Pipeline 7b0188e2ef20b2f5cc16602a4afe2628 https://www.encodeproject.org/files/ENCFF609JVH/@@download/ENCFF609JVH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF254VIE bed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF646BRW 2319331 ENCODE Processing Pipeline 8adfd182dc59f1497df7285a8340f203 https://www.encodeproject.org/files/ENCFF254VIE/@@download/ENCFF254VIE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF765EFU bigBed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF254VIE 5158102 ENCODE Processing Pipeline ca6926ab737aa5a80df383944544935f https://www.encodeproject.org/files/ENCFF765EFU/@@download/ENCFF765EFU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF613RXQ bigBed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF946KGB 4893330 ENCODE Processing Pipeline 43ef6cae371095f109ac9efe3860bc7e https://www.encodeproject.org/files/ENCFF613RXQ/@@download/ENCFF613RXQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF946KGB bed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF359RLE, ENCFF431MET, ENCFF646BRW 2218238 ENCODE Processing Pipeline 83238226b7b65a8a9fd2402acca70e43 https://www.encodeproject.org/files/ENCFF946KGB/@@download/ENCFF946KGB.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF079YAW bigWig signal p-value ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF359RLE, ENCFF431MET, ENCFF646BRW 886222724 ENCODE Processing Pipeline edb837d11282f8ec3bb0d499dbd8a5e0 https://www.encodeproject.org/files/ENCFF079YAW/@@download/ENCFF079YAW.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF731EJZ bigBed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF016PNE 3402027 ENCODE Processing Pipeline 7aea229a3a0926bff82c7e77defaa29d https://www.encodeproject.org/files/ENCFF731EJZ/@@download/ENCFF731EJZ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF042ZOT bigWig signal p-value ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF646BRW 596546965 ENCODE Processing Pipeline 4cac7d8feb0eea240efe93c6b82461ed https://www.encodeproject.org/files/ENCFF042ZOT/@@download/ENCFF042ZOT.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF390GOR bigWig fold change over control ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF359RLE, ENCFF431MET 611576733 ENCODE Processing Pipeline bbb01e85490d40b696e2e9902b5ae633 https://www.encodeproject.org/files/ENCFF390GOR/@@download/ENCFF390GOR.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF454HVL bigWig fold change over control ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF646BRW 578650787 ENCODE Processing Pipeline 4d3d327e4b0273d869d067b3f7c698ec https://www.encodeproject.org/files/ENCFF454HVL/@@download/ENCFF454HVL.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF061XMP bigWig fold change over control ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF359RLE, ENCFF431MET, ENCFF646BRW 889982255 ENCODE Processing Pipeline c3bf0650921b7c28b5fcb28ef4af008e https://www.encodeproject.org/files/ENCFF061XMP/@@download/ENCFF061XMP.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF847KLG bigBed narrowPeak replicated peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF318VQG 2925242 ENCODE Processing Pipeline 605c7efd106b5a2f846c033e185d0238 https://www.encodeproject.org/files/ENCFF847KLG/@@download/ENCFF847KLG.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF318VQG bed narrowPeak replicated peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF016PNE, ENCFF254VIE, ENCFF946KGB 1502376 ENCODE Processing Pipeline 50e2ef7d9cc1e35daf0395c7e25c73e1 https://www.encodeproject.org/files/ENCFF318VQG/@@download/ENCFF318VQG.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF238YIZ bam unfiltered alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIO, ENCFF018NEO 1767293507 ENCODE Processing Pipeline a0343d2d5609462b58b5d94fb018e592 https://www.encodeproject.org/files/ENCFF238YIZ/@@download/ENCFF238YIZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF620PAX bam unfiltered alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIK, ENCFF018NEO, ENCFF868WED 1798839104 ENCODE Processing Pipeline 1f3a3b8b8cbdc2d36ed2b1683f33bad2 https://www.encodeproject.org/files/ENCFF620PAX/@@download/ENCFF620PAX.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF259AIP bam alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIO, ENCFF018NEO 1156689166 ENCODE Processing Pipeline 0f3558c34335845ded889d1cfe4ad790 https://www.encodeproject.org/files/ENCFF259AIP/@@download/ENCFF259AIP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF109EIV bam alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIK, ENCFF018NEO, ENCFF868WED 1199513196 ENCODE Processing Pipeline 16a93998a0c58b93a3af1c0ec581dcea https://www.encodeproject.org/files/ENCFF109EIV/@@download/ENCFF109EIV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF399WSX bed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF259AIP, ENCFF517WIG 1685255 ENCODE Processing Pipeline 31d8ff454b759945745be1f7de6a11c3 https://www.encodeproject.org/files/ENCFF399WSX/@@download/ENCFF399WSX.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF336IUL bed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF109EIV, ENCFF517WIG 2261229 ENCODE Processing Pipeline e7844906ccb8d61b22cbf01c28211eaf https://www.encodeproject.org/files/ENCFF336IUL/@@download/ENCFF336IUL.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF194CJT bed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF109EIV, ENCFF259AIP, ENCFF517WIG 2360284 ENCODE Processing Pipeline d0aefa270902812dcde6c1e7e61a64a1 https://www.encodeproject.org/files/ENCFF194CJT/@@download/ENCFF194CJT.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF701FGX bigBed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399WSX 3157979 ENCODE Processing Pipeline fcc47ba5470cc3195076d1c2b1e9c980 https://www.encodeproject.org/files/ENCFF701FGX/@@download/ENCFF701FGX.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF748SPA bigBed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF336IUL 5121156 ENCODE Processing Pipeline 4e9a31667244be2b557eb011049a8adc https://www.encodeproject.org/files/ENCFF748SPA/@@download/ENCFF748SPA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF950IHT bigBed narrowPeak peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF194CJT 5293784 ENCODE Processing Pipeline a4c7f4f9b9a9a2503f75ff1462e2bf7c https://www.encodeproject.org/files/ENCFF950IHT/@@download/ENCFF950IHT.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF213GHD bigWig signal p-value ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF259AIP, ENCFF517WIG 497090805 ENCODE Processing Pipeline 5870212979525b7d165a497fb96c3732 https://www.encodeproject.org/files/ENCFF213GHD/@@download/ENCFF213GHD.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF184XCE bigWig signal p-value ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF109EIV, ENCFF517WIG 558683012 ENCODE Processing Pipeline 9f1ef59e5a42548555b4e5907def3778 https://www.encodeproject.org/files/ENCFF184XCE/@@download/ENCFF184XCE.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF227QPH bigWig signal p-value ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF109EIV, ENCFF259AIP, ENCFF517WIG 902062609 ENCODE Processing Pipeline 9544c9681d7bd37ee8ad0b112757e482 https://www.encodeproject.org/files/ENCFF227QPH/@@download/ENCFF227QPH.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF902TZR bigWig fold change over control ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF259AIP, ENCFF517WIG 594155726 ENCODE Processing Pipeline 0983190ebba43408dbdce2ed9545da9e https://www.encodeproject.org/files/ENCFF902TZR/@@download/ENCFF902TZR.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF254LSM bigWig fold change over control ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF109EIV, ENCFF517WIG 615121251 ENCODE Processing Pipeline 9575c8ae00cba1113d0393b4159ea278 https://www.encodeproject.org/files/ENCFF254LSM/@@download/ENCFF254LSM.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF562BME bigWig fold change over control ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF109EIV, ENCFF259AIP, ENCFF517WIG 902651227 ENCODE Processing Pipeline 3b66bbd1dfe0e7990492f6b35f59043c https://www.encodeproject.org/files/ENCFF562BME/@@download/ENCFF562BME.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF894AGF bed narrowPeak replicated peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF194CJT, ENCFF336IUL, ENCFF399WSX 1541301 ENCODE Processing Pipeline 5497b3943d4385b9c571ee28c879e7fa https://www.encodeproject.org/files/ENCFF894AGF/@@download/ENCFF894AGF.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF381FKU bigBed narrowPeak replicated peaks ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF894AGF 3044514 ENCODE Processing Pipeline 91c3b32ab4b404550b3a9e7c00b4732e https://www.encodeproject.org/files/ENCFF381FKU/@@download/ENCFF381FKU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF311QBQ fastq reads ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1545957131 Bing Ren, UCSD 9903b4cb952021f776b5976636261bcc SRA:SRR3652029 https://www.encodeproject.org/files/ENCFF311QBQ/@@download/ENCFF311QBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released mild to moderate bottlenecking, inconsistent platforms ENCFF313TTW fastq reads ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2135594136 Bing Ren, UCSD 04472adac751948df00ab94bbdf0a3ad SRA:SRR3652028 https://www.encodeproject.org/files/ENCFF313TTW/@@download/ENCFF313TTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released mild to moderate bottlenecking, inconsistent platforms ENCFF988KOX bam alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF313TTW, ENCFF806TVZ 1703203996 ENCODE Processing Pipeline 8e4f430dc760b3938d46f833e5ce9184 https://www.encodeproject.org/files/ENCFF988KOX/@@download/ENCFF988KOX.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF641GFN bam alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF311QBQ, ENCFF806TVZ 1255131647 ENCODE Processing Pipeline 68681d4f3d1851029b8c981a253ec195 https://www.encodeproject.org/files/ENCFF641GFN/@@download/ENCFF641GFN.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF914TBT bed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF641GFN, ENCFF792GEI 791008 ENCODE Processing Pipeline 22cffc6c769c102d4bd951fc9b224616 https://www.encodeproject.org/files/ENCFF914TBT/@@download/ENCFF914TBT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF749HUJ bigBed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF914TBT 2484219 ENCODE Processing Pipeline c21260c444f88b8992d02aeccb0c64ec https://www.encodeproject.org/files/ENCFF749HUJ/@@download/ENCFF749HUJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF537GKM bed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF988KOX 816850 ENCODE Processing Pipeline 5f5b52b4df05c838ae6754d1758e2c19 https://www.encodeproject.org/files/ENCFF537GKM/@@download/ENCFF537GKM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF582CIG bigWig signal p-value ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF641GFN, ENCFF792GEI 732877448 ENCODE Processing Pipeline 6b6ab7163e83e98c81e8c06ea1b0c45e https://www.encodeproject.org/files/ENCFF582CIG/@@download/ENCFF582CIG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF527FDZ bed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF641GFN, ENCFF792GEI, ENCFF988KOX 877531 ENCODE Processing Pipeline ae6db6d0b1dbfa65a07a282b2af22b4e https://www.encodeproject.org/files/ENCFF527FDZ/@@download/ENCFF527FDZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF138BAD bigWig signal p-value ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF988KOX 815852296 ENCODE Processing Pipeline 73ca1617cb4bacdf3a034d1c87cd6808 https://www.encodeproject.org/files/ENCFF138BAD/@@download/ENCFF138BAD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF759VQX bigWig signal p-value ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF641GFN, ENCFF792GEI, ENCFF988KOX 1049126264 ENCODE Processing Pipeline 435d72233963d35ef1c7649ccf242176 https://www.encodeproject.org/files/ENCFF759VQX/@@download/ENCFF759VQX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF914HDW bigBed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF537GKM 2536529 ENCODE Processing Pipeline 8e2464037ecc1bdbf50b1a6f1e896a9f https://www.encodeproject.org/files/ENCFF914HDW/@@download/ENCFF914HDW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF701XYV bigBed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF527FDZ 2647254 ENCODE Processing Pipeline 723bb5778013b1fe940584912410f5b2 https://www.encodeproject.org/files/ENCFF701XYV/@@download/ENCFF701XYV.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF846BBT bed narrowPeak replicated peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF527FDZ, ENCFF537GKM, ENCFF914TBT 968923 ENCODE Processing Pipeline c69d85e9031cd6b0e42cd911bddaee04 https://www.encodeproject.org/files/ENCFF846BBT/@@download/ENCFF846BBT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF091QDX bigWig fold change over control ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF641GFN, ENCFF792GEI, ENCFF988KOX 1134581600 ENCODE Processing Pipeline 45365629df720ebdffed27ee656ccd20 https://www.encodeproject.org/files/ENCFF091QDX/@@download/ENCFF091QDX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF307VMR bigWig fold change over control ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF641GFN, ENCFF792GEI 724835919 ENCODE Processing Pipeline 1792518b5ecdeeeaeff51ef5f7c165f8 https://www.encodeproject.org/files/ENCFF307VMR/@@download/ENCFF307VMR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF862JTO bigWig fold change over control ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF988KOX 875239965 ENCODE Processing Pipeline 47524d24ca7355c003ac5fb77eabaa35 https://www.encodeproject.org/files/ENCFF862JTO/@@download/ENCFF862JTO.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF870FBZ bigBed narrowPeak replicated peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF846BBT 2158336 ENCODE Processing Pipeline 8145a2751e538eeac75e2ded44482048 https://www.encodeproject.org/files/ENCFF870FBZ/@@download/ENCFF870FBZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF774BWF bam unfiltered alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF311QBQ 1794826052 ENCODE Processing Pipeline e338269b2170cca91c3c07187c5f4ffe https://www.encodeproject.org/files/ENCFF774BWF/@@download/ENCFF774BWF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF920SVF bam unfiltered alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF313TTW 2466941210 ENCODE Processing Pipeline 389f7a3885a10fa7a15ffb4b5aa7d21e https://www.encodeproject.org/files/ENCFF920SVF/@@download/ENCFF920SVF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF579SSL bam alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF311QBQ 1254907094 ENCODE Processing Pipeline 434c0a37cb748d9c88f15642e23a622b https://www.encodeproject.org/files/ENCFF579SSL/@@download/ENCFF579SSL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF530AAI bam alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF313TTW 1702896297 ENCODE Processing Pipeline 0e4349b4c0118682fce112e8bc9996b0 https://www.encodeproject.org/files/ENCFF530AAI/@@download/ENCFF530AAI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF014IJR bed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF579SSL, ENCFF901RYX 769809 ENCODE Processing Pipeline 17c7645831f754fdcc17a74c40ea9396 https://www.encodeproject.org/files/ENCFF014IJR/@@download/ENCFF014IJR.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF039GMI bed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF530AAI, ENCFF880SQD 793242 ENCODE Processing Pipeline 0d1e6ddaabb10c84eac5541514889c9b https://www.encodeproject.org/files/ENCFF039GMI/@@download/ENCFF039GMI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF043JLZ bigBed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF039GMI 2502576 ENCODE Processing Pipeline c9190854c2148969131c66e0e5f318af https://www.encodeproject.org/files/ENCFF043JLZ/@@download/ENCFF043JLZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF930DSK bed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF530AAI, ENCFF579SSL, ENCFF880SQD, ENCFF901RYX 889476 ENCODE Processing Pipeline a1490847091d6cc453e3ffd991e49ce3 https://www.encodeproject.org/files/ENCFF930DSK/@@download/ENCFF930DSK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF074WRS bigBed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF014IJR 2447388 ENCODE Processing Pipeline 73998df03631d89e13b514b7fa9291f6 https://www.encodeproject.org/files/ENCFF074WRS/@@download/ENCFF074WRS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF058EID bigBed narrowPeak peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF930DSK 2674183 ENCODE Processing Pipeline c7998324605ad81dbee9f0aafa1b1aca https://www.encodeproject.org/files/ENCFF058EID/@@download/ENCFF058EID.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF871CMB bigWig signal p-value ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF579SSL, ENCFF901RYX 579410415 ENCODE Processing Pipeline a54aa1446d1e9810065e3ce770f4be4e https://www.encodeproject.org/files/ENCFF871CMB/@@download/ENCFF871CMB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF683UVG bigWig signal p-value ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF530AAI, ENCFF880SQD 737851701 ENCODE Processing Pipeline bf8fe895a2a8a2fbc0dd90ba1129f189 https://www.encodeproject.org/files/ENCFF683UVG/@@download/ENCFF683UVG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF404BMG bigWig signal p-value ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF530AAI, ENCFF579SSL, ENCFF880SQD, ENCFF901RYX 933030191 ENCODE Processing Pipeline e54b4818cd1380037307ed1b6bf38548 https://www.encodeproject.org/files/ENCFF404BMG/@@download/ENCFF404BMG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF807RJO bigWig fold change over control ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF579SSL, ENCFF901RYX 573924655 ENCODE Processing Pipeline 90e6655ff75dea124c087c7f460dc5a7 https://www.encodeproject.org/files/ENCFF807RJO/@@download/ENCFF807RJO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF761SGC bigWig fold change over control ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF530AAI, ENCFF880SQD 685260846 ENCODE Processing Pipeline 9f1e1b1d38095a76a6920e0b2e539eb7 https://www.encodeproject.org/files/ENCFF761SGC/@@download/ENCFF761SGC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF083ZPL bigWig fold change over control ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF530AAI, ENCFF579SSL, ENCFF880SQD, ENCFF901RYX 1201093519 ENCODE Processing Pipeline 0b3ca09dea809ebcbdfc3a9721955b00 https://www.encodeproject.org/files/ENCFF083ZPL/@@download/ENCFF083ZPL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF799TEJ bed narrowPeak replicated peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF014IJR, ENCFF039GMI, ENCFF930DSK 965923 ENCODE Processing Pipeline 3fe00e11adc6fd1e517c0a3c9aa11265 https://www.encodeproject.org/files/ENCFF799TEJ/@@download/ENCFF799TEJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF717QCU bigBed narrowPeak replicated peaks ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF799TEJ 2151349 ENCODE Processing Pipeline 7179c5aefaa67155145db726c2cc96b2 https://www.encodeproject.org/files/ENCFF717QCU/@@download/ENCFF717QCU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001KST bam alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KTC 249359896 Bing Ren, UCSD f231ffb8c9dc1ec2e222bb93041097ed https://www.encodeproject.org/files/ENCFF001KST/@@download/ENCFF001KST.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001KSV bam alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KTF 424037117 Bing Ren, UCSD 42edbb82dc96a37ef2571d24767d1958 https://www.encodeproject.org/files/ENCFF001KSV/@@download/ENCFF001KSV.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001KSW bigWig signal ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KST, ENCFF001KSV 75849942 Bing Ren, UCSD 0ceca399c1aaf77cb69661bf34df4d69 https://www.encodeproject.org/files/ENCFF001KSW/@@download/ENCFF001KSW.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001KTC fastq reads ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 493100371 Bing Ren, UCSD 176f8640b25410359ff87dda00cac4ab https://www.encodeproject.org/files/ENCFF001KTC/@@download/ENCFF001KTC.fastq.gz Illumina HiSeq 2000 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001KTF fastq reads ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 649686565 Bing Ren, UCSD b0fbce764a723e7190b7a09952f1d469 https://www.encodeproject.org/files/ENCFF001KTF/@@download/ENCFF001KTF.fastq.gz Illumina HiSeq 2000 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF815IVY bam unfiltered alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KTC, ENCFF516HDY 502146549 J. Michael Cherry, Stanford 75ab25d91f9ac3157bde2171b5f1a791 https://www.encodeproject.org/files/ENCFF815IVY/@@download/ENCFF815IVY.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF799XBR bam unfiltered alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KTF, ENCFF516HDY 732258908 J. Michael Cherry, Stanford 6f2d4722e5518f9fe431a36421023a2f https://www.encodeproject.org/files/ENCFF799XBR/@@download/ENCFF799XBR.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF866LQQ bam unfiltered alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KTF, ENCFF018NEO 733745633 ENCODE Processing Pipeline b543a773138090a8cd0e4d3efc38856a https://www.encodeproject.org/files/ENCFF866LQQ/@@download/ENCFF866LQQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF166ROS bam unfiltered alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KTC, ENCFF018NEO 503024233 ENCODE Processing Pipeline 693eb6e4d12e61dba4334799bc395f3a https://www.encodeproject.org/files/ENCFF166ROS/@@download/ENCFF166ROS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF914TSC bam alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTF, ENCFF018NEO 437264371 ENCODE Processing Pipeline 6f8e87a3cdf85c521c37cc2cf84c9ce6 https://www.encodeproject.org/files/ENCFF914TSC/@@download/ENCFF914TSC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF674KWP bam alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTC, ENCFF018NEO 189143845 ENCODE Processing Pipeline 80adad1918db1859dfc15cabda2d598a https://www.encodeproject.org/files/ENCFF674KWP/@@download/ENCFF674KWP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF002AHK fastq reads ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1017761231 Bing Ren, UCSD 0dcc862a30e343eb589614b6f4362caf SRA:SRR3652517 https://www.encodeproject.org/files/ENCFF002AHK/@@download/ENCFF002AHK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF316RCH fastq reads ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 314277757 Bing Ren, UCSD af3c3d66a69d10b43d85eb95f9ae6b38 SRA:SRR3652518 https://www.encodeproject.org/files/ENCFF316RCH/@@download/ENCFF316RCH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF291XMI fastq reads ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1648260406 Bing Ren, UCSD 7320d3dd045d6f0fd7229c43b392910a SRA:SRR3652519 https://www.encodeproject.org/files/ENCFF291XMI/@@download/ENCFF291XMI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APR/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF974FPN bam alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF291XMI, ENCFF806TVZ 1380612985 ENCODE Processing Pipeline a03e53e43e5cfc3bc443ab93448cb14b https://www.encodeproject.org/files/ENCFF974FPN/@@download/ENCFF974FPN.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF083SYK bam alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHK, ENCFF316RCH, ENCFF806TVZ 1115897392 ENCODE Processing Pipeline 6b3db4d5b0dd21b72ae9360fdd120a53 https://www.encodeproject.org/files/ENCFF083SYK/@@download/ENCFF083SYK.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF011TKZ bed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF083SYK, ENCFF126APW 2873167 ENCODE Processing Pipeline 207d514bff8a07ed955d5e9e3c9b9652 https://www.encodeproject.org/files/ENCFF011TKZ/@@download/ENCFF011TKZ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF469CSI bigBed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF479WXE 6264047 ENCODE Processing Pipeline 7d67740739d96b176af6cc136d387d82 https://www.encodeproject.org/files/ENCFF469CSI/@@download/ENCFF469CSI.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF341UAY bigWig signal p-value ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF083SYK, ENCFF126APW 405828784 ENCODE Processing Pipeline a1bc67bbed521ba7d6192bf41b2d6437 https://www.encodeproject.org/files/ENCFF341UAY/@@download/ENCFF341UAY.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF168EUW bigWig fold change over control ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF083SYK, ENCFF126APW 446962038 ENCODE Processing Pipeline 0867dfec03782601382c9fb573881262 https://www.encodeproject.org/files/ENCFF168EUW/@@download/ENCFF168EUW.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF960GZD bed narrowPeak replicated peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF011TKZ, ENCFF448QNY, ENCFF479WXE 2373519 ENCODE Processing Pipeline d4a3db806ac3509281bd72a5f232ab29 https://www.encodeproject.org/files/ENCFF960GZD/@@download/ENCFF960GZD.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF095FON bigBed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF448QNY 6481222 ENCODE Processing Pipeline 6fc7c8f66f8fbe9f76739ab39442f272 https://www.encodeproject.org/files/ENCFF095FON/@@download/ENCFF095FON.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF917OUD bigBed narrowPeak replicated peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF960GZD 4127859 ENCODE Processing Pipeline 12fa612218db59978a6bb43ae6e877e0 https://www.encodeproject.org/files/ENCFF917OUD/@@download/ENCFF917OUD.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF448QNY bed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF893KXG, ENCFF974FPN 2969527 ENCODE Processing Pipeline 530b23884443aa6c76d90704c58365bd https://www.encodeproject.org/files/ENCFF448QNY/@@download/ENCFF448QNY.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF479WXE bed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF083SYK, ENCFF126APW, ENCFF893KXG, ENCFF974FPN 2927688 ENCODE Processing Pipeline 6ad8ee83c0d97306599f4f496e93a5b1 https://www.encodeproject.org/files/ENCFF479WXE/@@download/ENCFF479WXE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF197INE bigBed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF011TKZ 6141757 ENCODE Processing Pipeline c8bd63ee0b393dca7e79f99c6678febc https://www.encodeproject.org/files/ENCFF197INE/@@download/ENCFF197INE.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF020PSR bigWig signal p-value ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF893KXG, ENCFF974FPN 603848937 ENCODE Processing Pipeline eefe6def92984bb2751b0d01468a08bd https://www.encodeproject.org/files/ENCFF020PSR/@@download/ENCFF020PSR.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF357ZRZ bigWig signal p-value ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF083SYK, ENCFF126APW, ENCFF893KXG, ENCFF974FPN 911625640 ENCODE Processing Pipeline 912a03e50606137c8b3929359608e552 https://www.encodeproject.org/files/ENCFF357ZRZ/@@download/ENCFF357ZRZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF648LPH bigWig fold change over control ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF893KXG, ENCFF974FPN 612206655 ENCODE Processing Pipeline 8b4e89809344f009b6b645a3d19e64a3 https://www.encodeproject.org/files/ENCFF648LPH/@@download/ENCFF648LPH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF425GDH bigWig fold change over control ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF083SYK, ENCFF126APW, ENCFF893KXG, ENCFF974FPN 914944596 ENCODE Processing Pipeline 2ada4f563c260046da080fffbcd332cf https://www.encodeproject.org/files/ENCFF425GDH/@@download/ENCFF425GDH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF286BFL bam unfiltered alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHK, ENCFF018NEO, ENCFF316RCH 1518761194 ENCODE Processing Pipeline 79873d8741cb7ff4eece8fa51f87cae6 https://www.encodeproject.org/files/ENCFF286BFL/@@download/ENCFF286BFL.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF080PJE bam unfiltered alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF291XMI 1652143777 ENCODE Processing Pipeline af782d304e04988e8d3c63af4d5abfeb https://www.encodeproject.org/files/ENCFF080PJE/@@download/ENCFF080PJE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF282WAG bam alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHK, ENCFF018NEO, ENCFF316RCH 1045109386 ENCODE Processing Pipeline c8f398ce796926959b48f93f0bf0eeac https://www.encodeproject.org/files/ENCFF282WAG/@@download/ENCFF282WAG.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF197GEE bam alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF291XMI 1067258971 ENCODE Processing Pipeline f1178702e8442018cf0002a1721da490 https://www.encodeproject.org/files/ENCFF197GEE/@@download/ENCFF197GEE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF272GYC bed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF282WAG, ENCFF921XQX 2915435 ENCODE Processing Pipeline 37c606e7b129ab882a1c78fb3e7374f3 https://www.encodeproject.org/files/ENCFF272GYC/@@download/ENCFF272GYC.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF036IJJ bed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF197GEE, ENCFF255XXC, ENCFF921XQX 3311745 ENCODE Processing Pipeline ae6a3bbc1bde962c23ce57299c1c2ce4 https://www.encodeproject.org/files/ENCFF036IJJ/@@download/ENCFF036IJJ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF009TYF bed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF197GEE, ENCFF255XXC, ENCFF282WAG, ENCFF921XQX 2874486 ENCODE Processing Pipeline 7258e309f739f70127f669fc9e8e344b https://www.encodeproject.org/files/ENCFF009TYF/@@download/ENCFF009TYF.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF034JZZ bigBed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF272GYC 6191409 ENCODE Processing Pipeline 36c44e039d60f23e2210ae9f97a9126b https://www.encodeproject.org/files/ENCFF034JZZ/@@download/ENCFF034JZZ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF295NSR bigBed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036IJJ 7195423 ENCODE Processing Pipeline 99bea792f7b62d94915d530300e901e1 https://www.encodeproject.org/files/ENCFF295NSR/@@download/ENCFF295NSR.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF498KUU bigBed narrowPeak peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009TYF 6187190 ENCODE Processing Pipeline 341a1169c98b7cbc17b813189d6fb741 https://www.encodeproject.org/files/ENCFF498KUU/@@download/ENCFF498KUU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF565JUY bigWig signal p-value ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF282WAG, ENCFF921XQX 384827648 ENCODE Processing Pipeline b2b274ba778d743412fded2bd37dd986 https://www.encodeproject.org/files/ENCFF565JUY/@@download/ENCFF565JUY.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF752LXM bigWig signal p-value ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF197GEE, ENCFF255XXC, ENCFF921XQX 520627559 ENCODE Processing Pipeline 81e78f1afa019dfd229b65d34df532a3 https://www.encodeproject.org/files/ENCFF752LXM/@@download/ENCFF752LXM.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF142BZN bigWig signal p-value ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF197GEE, ENCFF255XXC, ENCFF282WAG, ENCFF921XQX 908882287 ENCODE Processing Pipeline 38a77cc64e3f43972f5ae9daca4f189c https://www.encodeproject.org/files/ENCFF142BZN/@@download/ENCFF142BZN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF766TQE bigWig fold change over control ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF282WAG, ENCFF921XQX 438191749 ENCODE Processing Pipeline ff2452e20a05bede6ccf5e182db2c746 https://www.encodeproject.org/files/ENCFF766TQE/@@download/ENCFF766TQE.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF784ZPS bigWig fold change over control ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF197GEE, ENCFF255XXC, ENCFF921XQX 571626846 ENCODE Processing Pipeline 481c879defd76090c00ff30add4a85ee https://www.encodeproject.org/files/ENCFF784ZPS/@@download/ENCFF784ZPS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF965EJR bigWig fold change over control ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF197GEE, ENCFF255XXC, ENCFF282WAG, ENCFF921XQX 908075671 ENCODE Processing Pipeline 87a73bf66bf882939359f814f8c13a94 https://www.encodeproject.org/files/ENCFF965EJR/@@download/ENCFF965EJR.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF012TIE bed narrowPeak replicated peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009TYF, ENCFF036IJJ, ENCFF272GYC 2457946 ENCODE Processing Pipeline b409c3fc41587730407855bb3f1bc0f1 https://www.encodeproject.org/files/ENCFF012TIE/@@download/ENCFF012TIE.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF591UNE bigBed narrowPeak replicated peaks ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF012TIE 4274789 ENCODE Processing Pipeline b6b045e2708e2afcceb972e5d8c72147 https://www.encodeproject.org/files/ENCFF591UNE/@@download/ENCFF591UNE.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001MBV bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MCF 1606796886 Ross Hardison, PennState 34d5f54de246695f337ebd9a23dd82ff https://www.encodeproject.org/files/ENCFF001MBV/@@download/ENCFF001MBV.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBX bigBed broadPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDJ 3086630 Ross Hardison, PennState 8cf7081a0b60181bd81c7eb86c5675d6 https://www.encodeproject.org/files/ENCFF001MBX/@@download/ENCFF001MBX.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBY bigBed broadPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDK 2084594 Ross Hardison, PennState 5345aa1788f8589ff0ba8d2771624496 https://www.encodeproject.org/files/ENCFF001MBY/@@download/ENCFF001MBY.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBZ bigBed broadPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDL 2985440 Ross Hardison, PennState a3113cf52664e10a1b31096db04a1dc1 https://www.encodeproject.org/files/ENCFF001MBZ/@@download/ENCFF001MBZ.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCA bigWig signal ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 4061933153 Ross Hardison, PennState 69ebc27b7c37de512d212fd46d98ece5 https://www.encodeproject.org/files/ENCFF001MCA/@@download/ENCFF001MCA.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MCB bigWig signal ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5320493043 Ross Hardison, PennState 7f892abf189821d31163d7c1ef96448f https://www.encodeproject.org/files/ENCFF001MCB/@@download/ENCFF001MCB.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MCC bigWig signal ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 5743434979 Ross Hardison, PennState 9125da495e8cd7078e19f7d0ad7eb0cf https://www.encodeproject.org/files/ENCFF001MCC/@@download/ENCFF001MCC.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MCD bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MCN 4774171725 Ross Hardison, PennState 1dde3d43d11b9e93bc00492718ef5868 https://www.encodeproject.org/files/ENCFF001MCD/@@download/ENCFF001MCD.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCF fastq reads ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 41 single-ended 1319357618 Ross Hardison, PennState f1dda95e720324b718f1208afcce7267 https://www.encodeproject.org/files/ENCFF001MCF/@@download/ENCFF001MCF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MCN fastq reads ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4276865227 Ross Hardison, PennState cf1a1955d0e7db25edd926eb622bc979 https://www.encodeproject.org/files/ENCFF001MCN/@@download/ENCFF001MCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSW/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001YDJ bed broadPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1576661 Ross Hardison, PennState 6b97db8a653fe96f4ebe5e299011d647 https://www.encodeproject.org/files/ENCFF001YDJ/@@download/ENCFF001YDJ.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDK bed broadPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 777750 Ross Hardison, PennState 46d5fbd7c435a9b5f939d860d76a5dad https://www.encodeproject.org/files/ENCFF001YDK/@@download/ENCFF001YDK.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDL bed broadPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1448268 Ross Hardison, PennState 0667f697de9ffaeae6e2e00a0f91de6a https://www.encodeproject.org/files/ENCFF001YDL/@@download/ENCFF001YDL.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF334SWW bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MCN, ENCFF806TVZ 2890576808 ENCODE Processing Pipeline 20b08353a381ef186e397939496f462b https://www.encodeproject.org/files/ENCFF334SWW/@@download/ENCFF334SWW.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF093FRE bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MCF, ENCFF806TVZ 941107693 ENCODE Processing Pipeline 7642b00c90a700d938ca0dbe244fe990 https://www.encodeproject.org/files/ENCFF093FRE/@@download/ENCFF093FRE.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF469TBD bam unfiltered alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCF, ENCFF018NEO 1566380279 ENCODE Processing Pipeline 6e3090cb5d779085c763b829a4a7db1c https://www.encodeproject.org/files/ENCFF469TBD/@@download/ENCFF469TBD.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF309DLC bam unfiltered alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCN, ENCFF018NEO 3813916897 ENCODE Processing Pipeline 8e853170a844c366030304eaf67aaccf https://www.encodeproject.org/files/ENCFF309DLC/@@download/ENCFF309DLC.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF256URV bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCN, ENCFF018NEO 2053315902 ENCODE Processing Pipeline 36f4434fffa3dbe8f16f3de12bbfcde2 https://www.encodeproject.org/files/ENCFF256URV/@@download/ENCFF256URV.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF188NHC bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCF, ENCFF018NEO 819733996 ENCODE Processing Pipeline b5252115231f3091a0eb198626f94ad6 https://www.encodeproject.org/files/ENCFF188NHC/@@download/ENCFF188NHC.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF995SHC bed narrowPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF256URV, ENCFF383IWZ, ENCFF676LVI 4791611 ENCODE Processing Pipeline f7b96043f676eb5c8a968a8cc0e06aaa https://www.encodeproject.org/files/ENCFF995SHC/@@download/ENCFF995SHC.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF458MTW bed narrowPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF188NHC, ENCFF256URV, ENCFF383IWZ, ENCFF676LVI 5961694 ENCODE Processing Pipeline de1bb63b8b93173bb90c20abf59d7d97 https://www.encodeproject.org/files/ENCFF458MTW/@@download/ENCFF458MTW.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF705NKW bigBed narrowPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF609QXL 8781093 ENCODE Processing Pipeline e8ee686e5854bcc49587f6034e1cdc9d https://www.encodeproject.org/files/ENCFF705NKW/@@download/ENCFF705NKW.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF526ZRG bigBed narrowPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF995SHC 11408442 ENCODE Processing Pipeline 01e059ff2691fe4fb4c8e9eef4daccde https://www.encodeproject.org/files/ENCFF526ZRG/@@download/ENCFF526ZRG.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF609QXL bed narrowPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF188NHC, ENCFF383IWZ, ENCFF676LVI 4682712 ENCODE Processing Pipeline b3676f2918f68f6e3234a4e4528fca31 https://www.encodeproject.org/files/ENCFF609QXL/@@download/ENCFF609QXL.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF648XEU bigBed narrowPeak peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF458MTW 13949580 ENCODE Processing Pipeline d4f5d9a3eb3e1b673002d4640cf9f0e9 https://www.encodeproject.org/files/ENCFF648XEU/@@download/ENCFF648XEU.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF004HSI bigWig signal p-value ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF188NHC, ENCFF383IWZ, ENCFF676LVI 868283334 ENCODE Processing Pipeline c860f75112ca3f0d9cb952b41b1e34cf https://www.encodeproject.org/files/ENCFF004HSI/@@download/ENCFF004HSI.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF458VRS bigWig signal p-value ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF256URV, ENCFF383IWZ, ENCFF676LVI 1131452031 ENCODE Processing Pipeline 3e6bc1e1354c97016c79d4bd44a7fe04 https://www.encodeproject.org/files/ENCFF458VRS/@@download/ENCFF458VRS.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF797WTR bigWig signal p-value ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF188NHC, ENCFF256URV, ENCFF383IWZ, ENCFF676LVI 1093150203 ENCODE Processing Pipeline 1faba371fd31e0130469574b4f83d797 https://www.encodeproject.org/files/ENCFF797WTR/@@download/ENCFF797WTR.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF319CBA bigWig fold change over control ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF188NHC, ENCFF383IWZ, ENCFF676LVI 595789625 ENCODE Processing Pipeline 990f25d2eb5e7cb07ae5bfc7943a1d88 https://www.encodeproject.org/files/ENCFF319CBA/@@download/ENCFF319CBA.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF616EII bigWig fold change over control ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF256URV, ENCFF383IWZ, ENCFF676LVI 1187926384 ENCODE Processing Pipeline 07751d4ddb9d28ed0ad98307b6512889 https://www.encodeproject.org/files/ENCFF616EII/@@download/ENCFF616EII.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF797MYD bigWig fold change over control ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF188NHC, ENCFF256URV, ENCFF383IWZ, ENCFF676LVI 1351944645 ENCODE Processing Pipeline 454673a8c8d0226e3824d295a2ff388f https://www.encodeproject.org/files/ENCFF797MYD/@@download/ENCFF797MYD.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF428NIU bed narrowPeak replicated peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF458MTW, ENCFF609QXL, ENCFF995SHC 4710466 ENCODE Processing Pipeline 6b039d6553b1fc7ebc26102ab3ab660d https://www.encodeproject.org/files/ENCFF428NIU/@@download/ENCFF428NIU.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF083LUF bigBed narrowPeak replicated peaks ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF428NIU 8648431 ENCODE Processing Pipeline 285243939f4f5d03ff1aa69bcb74390e https://www.encodeproject.org/files/ENCFF083LUF/@@download/ENCFF083LUF.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF002BGI fastq reads ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1458635398 Bing Ren, UCSD a1e9866074803a61b09fd7a202f4684f SRA:SRR3651782 https://www.encodeproject.org/files/ENCFF002BGI/@@download/ENCFF002BGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARA/ released low read length, inconsistent control read length, low read depth ENCFF002BGR fastq reads ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 855806292 Bing Ren, UCSD bc0953270af7ebd1a1e38d8c3f5f87f3 SRA:SRR3651783 https://www.encodeproject.org/files/ENCFF002BGR/@@download/ENCFF002BGR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQY/ released low read length, inconsistent control read length, low read depth ENCFF058CIU bam alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGI, ENCFF806TVZ 1134950858 ENCODE Processing Pipeline 4be6b3fb8c621acf4b393435054ec44b https://www.encodeproject.org/files/ENCFF058CIU/@@download/ENCFF058CIU.bam mm10-minimal archived low read length, low read depth ENCFF165MWZ bam alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGR, ENCFF806TVZ 721267371 ENCODE Processing Pipeline 0ef602b15616b8c4d8ff245aaafa3f45 https://www.encodeproject.org/files/ENCFF165MWZ/@@download/ENCFF165MWZ.bam mm10-minimal archived low read length, low read depth ENCFF018RCI bigBed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387YXL 2432158 ENCODE Processing Pipeline 2690fd82a0ea33e6eb64b32e89c61e14 https://www.encodeproject.org/files/ENCFF018RCI/@@download/ENCFF018RCI.bigBed mm10-minimal archived low read length, low read depth ENCFF387YXL bed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF165MWZ, ENCFF175WRM, ENCFF184XIW 965438 ENCODE Processing Pipeline 1d53b251c2ab42e7d74156c1083a0d02 https://www.encodeproject.org/files/ENCFF387YXL/@@download/ENCFF387YXL.bed.gz mm10-minimal archived low read length, low read depth ENCFF724MUF bed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF058CIU, ENCFF175WRM, ENCFF184XIW 1057306 ENCODE Processing Pipeline 8c75f00e0c79f504387128bb9e0032b1 https://www.encodeproject.org/files/ENCFF724MUF/@@download/ENCFF724MUF.bed.gz mm10-minimal archived low read length, low read depth ENCFF731FMI bed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF058CIU, ENCFF165MWZ, ENCFF175WRM, ENCFF184XIW 1282289 ENCODE Processing Pipeline 37e769350f4ebd8a0abd31011e6408e8 https://www.encodeproject.org/files/ENCFF731FMI/@@download/ENCFF731FMI.bed.gz mm10-minimal archived low read length, low read depth ENCFF232RJA bigBed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF731FMI 2985939 ENCODE Processing Pipeline 91e3653812b4bf4622d730d0e657e6eb https://www.encodeproject.org/files/ENCFF232RJA/@@download/ENCFF232RJA.bigBed mm10-minimal archived low read length, low read depth ENCFF242VTT bigWig signal p-value ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF165MWZ, ENCFF175WRM, ENCFF184XIW 410341564 ENCODE Processing Pipeline a48b61b1d1fc5c2de7b6ef752d00e757 https://www.encodeproject.org/files/ENCFF242VTT/@@download/ENCFF242VTT.bigWig mm10-minimal archived low read length, low read depth ENCFF150LJW bigBed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF724MUF 2563261 ENCODE Processing Pipeline 025e6a4cf994466f9b9c990ad38a5f7b https://www.encodeproject.org/files/ENCFF150LJW/@@download/ENCFF150LJW.bigBed mm10-minimal archived low read length, low read depth ENCFF136DSR bigWig signal p-value ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF058CIU, ENCFF175WRM, ENCFF184XIW 578457624 ENCODE Processing Pipeline 4da14cbca28724bc467c49cb0a95dc18 https://www.encodeproject.org/files/ENCFF136DSR/@@download/ENCFF136DSR.bigWig mm10-minimal archived low read length, low read depth ENCFF017PIZ bigWig signal p-value ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF058CIU, ENCFF165MWZ, ENCFF175WRM, ENCFF184XIW 722231330 ENCODE Processing Pipeline 0f0f7aafee25a7ca1efb080c894bd7cc https://www.encodeproject.org/files/ENCFF017PIZ/@@download/ENCFF017PIZ.bigWig mm10-minimal archived low read length, low read depth ENCFF447ATJ bigWig fold change over control ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF165MWZ, ENCFF175WRM, ENCFF184XIW 402377652 ENCODE Processing Pipeline 03589eb816764b565e069bdd3b139b05 https://www.encodeproject.org/files/ENCFF447ATJ/@@download/ENCFF447ATJ.bigWig mm10-minimal archived low read length, low read depth ENCFF435TTO bigWig fold change over control ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF058CIU, ENCFF175WRM, ENCFF184XIW 602791213 ENCODE Processing Pipeline 8087a2e221bb97c30a5933e359c5bead https://www.encodeproject.org/files/ENCFF435TTO/@@download/ENCFF435TTO.bigWig mm10-minimal archived low read length, low read depth ENCFF656BVS bigWig fold change over control ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF058CIU, ENCFF165MWZ, ENCFF175WRM, ENCFF184XIW 783881087 ENCODE Processing Pipeline 8cf052553965b9f2d8bd9ea3a86aafab https://www.encodeproject.org/files/ENCFF656BVS/@@download/ENCFF656BVS.bigWig mm10-minimal archived low read length, low read depth ENCFF474ING bigBed narrowPeak replicated peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF293CFR 1744580 ENCODE Processing Pipeline 0380a64c970e134b2e7224ed5c684f16 https://www.encodeproject.org/files/ENCFF474ING/@@download/ENCFF474ING.bigBed mm10-minimal archived low read length, low read depth ENCFF293CFR bed narrowPeak replicated peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387YXL, ENCFF724MUF, ENCFF731FMI 699848 ENCODE Processing Pipeline 9ffe0213d7e329fab19db49044fdb5b5 https://www.encodeproject.org/files/ENCFF293CFR/@@download/ENCFF293CFR.bed.gz mm10-minimal archived low read length, low read depth ENCFF673XQE bam unfiltered alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGR, ENCFF018NEO 1094276988 ENCODE Processing Pipeline ff10d6640f7f43b13c013d268417e04e https://www.encodeproject.org/files/ENCFF673XQE/@@download/ENCFF673XQE.bam mm10 released low read length, low read depth ENCFF397HRP bam unfiltered alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGI, ENCFF018NEO 1659430672 ENCODE Processing Pipeline 455ac0a22e4ddf8903cb77fcec7c3e41 https://www.encodeproject.org/files/ENCFF397HRP/@@download/ENCFF397HRP.bam mm10 released low read length, low read depth ENCFF301RJU bam alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGR, ENCFF018NEO 721057885 ENCODE Processing Pipeline 35831c17d4ba9c185ae77b6a36d8d760 https://www.encodeproject.org/files/ENCFF301RJU/@@download/ENCFF301RJU.bam mm10 released low read length, low read depth ENCFF720PCI bam alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGI, ENCFF018NEO 1134698747 ENCODE Processing Pipeline eb1c3267281da28195da8a3b17010115 https://www.encodeproject.org/files/ENCFF720PCI/@@download/ENCFF720PCI.bam mm10 released low read length, low read depth ENCFF414KWF bigBed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF597WYL 2463426 ENCODE Processing Pipeline 35e2a80d097221f281946d140919717c https://www.encodeproject.org/files/ENCFF414KWF/@@download/ENCFF414KWF.bigBed mm10 released low read length, low read depth ENCFF579FKA bed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF301RJU, ENCFF523XKB 952432 ENCODE Processing Pipeline 90ee19016840756d99c8832079f6768d https://www.encodeproject.org/files/ENCFF579FKA/@@download/ENCFF579FKA.bed.gz mm10 released low read length, low read depth ENCFF597WYL bed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF720PCI 1001607 ENCODE Processing Pipeline 8460dbaa8566fa1d39275f3273da7847 https://www.encodeproject.org/files/ENCFF597WYL/@@download/ENCFF597WYL.bed.gz mm10 released low read length, low read depth ENCFF147ARF bed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF301RJU, ENCFF523XKB, ENCFF720PCI 1063539 ENCODE Processing Pipeline 0d0a5cfcdbc579775c657632db901636 https://www.encodeproject.org/files/ENCFF147ARF/@@download/ENCFF147ARF.bed.gz mm10 released low read length, low read depth ENCFF615PIV bigBed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF579FKA 2423553 ENCODE Processing Pipeline d9a3b41c9cd42f9010075924290565d8 https://www.encodeproject.org/files/ENCFF615PIV/@@download/ENCFF615PIV.bigBed mm10 released low read length, low read depth ENCFF731SMC bigBed narrowPeak peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147ARF 2554402 ENCODE Processing Pipeline 2ad7e122a5de199febf241b861ca464d https://www.encodeproject.org/files/ENCFF731SMC/@@download/ENCFF731SMC.bigBed mm10 released low read length, low read depth ENCFF131TPO bigWig signal p-value ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF301RJU, ENCFF523XKB 490363896 ENCODE Processing Pipeline b5398cbacfd2f8d5df8edcc4bd66c16e https://www.encodeproject.org/files/ENCFF131TPO/@@download/ENCFF131TPO.bigWig mm10 released low read length, low read depth ENCFF449IPA bigWig signal p-value ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF720PCI 557723311 ENCODE Processing Pipeline 6728a39f20a0b93afda84a723e7295cd https://www.encodeproject.org/files/ENCFF449IPA/@@download/ENCFF449IPA.bigWig mm10 released low read length, low read depth ENCFF357TID bigWig signal p-value ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF301RJU, ENCFF523XKB, ENCFF720PCI 758936368 ENCODE Processing Pipeline b8e45bcf3c73b57f2468448df5d45283 https://www.encodeproject.org/files/ENCFF357TID/@@download/ENCFF357TID.bigWig mm10 released low read length, low read depth ENCFF313EVX bigWig fold change over control ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF301RJU, ENCFF523XKB 451119093 ENCODE Processing Pipeline 555b77f7be8f58a6b08a80a24954bc1d https://www.encodeproject.org/files/ENCFF313EVX/@@download/ENCFF313EVX.bigWig mm10 released low read length, low read depth ENCFF875XVM bigWig fold change over control ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF720PCI 598450260 ENCODE Processing Pipeline 51d7caca9510e664d2c2999c2aeab73c https://www.encodeproject.org/files/ENCFF875XVM/@@download/ENCFF875XVM.bigWig mm10 released low read length, low read depth ENCFF495TXX bigWig fold change over control ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF301RJU, ENCFF523XKB, ENCFF720PCI 816058721 ENCODE Processing Pipeline 77d9dd92c10de38e142f0258d728dc35 https://www.encodeproject.org/files/ENCFF495TXX/@@download/ENCFF495TXX.bigWig mm10 released low read length, low read depth ENCFF621ENB bed narrowPeak replicated peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147ARF, ENCFF579FKA, ENCFF597WYL 708091 ENCODE Processing Pipeline dc4db836cca204c7b2d03db411823630 https://www.encodeproject.org/files/ENCFF621ENB/@@download/ENCFF621ENB.bed.gz mm10 released low read length, low read depth ENCFF365TKQ bigBed narrowPeak replicated peaks ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF621ENB 1739267 ENCODE Processing Pipeline 98e2e46cbb4d94baff39d9f8ef5f573f https://www.encodeproject.org/files/ENCFF365TKQ/@@download/ENCFF365TKQ.bigBed mm10 released low read length, low read depth ENCFF243GMK fastq reads ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1936285258 Bing Ren, UCSD f832f3a88c4be77693520ccb00fd5e59 SRA:SRR3652917 https://www.encodeproject.org/files/ENCFF243GMK/@@download/ENCFF243GMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released inconsistent platforms ENCFF131IIM fastq reads ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2313214913 Bing Ren, UCSD 4f1c205af5c10a18970dd8dbd8da30a3 SRA:SRR3652918 https://www.encodeproject.org/files/ENCFF131IIM/@@download/ENCFF131IIM.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released inconsistent platforms ENCFF646VKL bam alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF243GMK, ENCFF806TVZ 1602255126 ENCODE Processing Pipeline b3f409edd1dec383e9a688c7d03494f0 https://www.encodeproject.org/files/ENCFF646VKL/@@download/ENCFF646VKL.bam mm10-minimal archived inconsistent platforms ENCFF760BNV bam alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF131IIM, ENCFF806TVZ 1844796257 ENCODE Processing Pipeline 57c6ff4590095e468af700500d48328e https://www.encodeproject.org/files/ENCFF760BNV/@@download/ENCFF760BNV.bam mm10-minimal archived inconsistent platforms ENCFF169MUH bigBed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF585LAD 2875400 ENCODE Processing Pipeline be0bfd0a2fd2087a3bc49daa0a0f25fa https://www.encodeproject.org/files/ENCFF169MUH/@@download/ENCFF169MUH.bigBed mm10-minimal archived inconsistent platforms ENCFF705LUR bigBed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF025LUS 3012248 ENCODE Processing Pipeline d4962000570b171814293a3c59e59d07 https://www.encodeproject.org/files/ENCFF705LUR/@@download/ENCFF705LUR.bigBed mm10-minimal archived inconsistent platforms ENCFF942VVH bigWig signal p-value ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF646VKL, ENCFF792GEI 789504880 ENCODE Processing Pipeline 799fadc77902f844d7a8fbb807cccb3b https://www.encodeproject.org/files/ENCFF942VVH/@@download/ENCFF942VVH.bigWig mm10-minimal archived inconsistent platforms ENCFF025LUS bed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF646VKL, ENCFF760BNV, ENCFF792GEI 994876 ENCODE Processing Pipeline 056e6b1da64ef96c715203d0f9ee1a3f https://www.encodeproject.org/files/ENCFF025LUS/@@download/ENCFF025LUS.bed.gz mm10-minimal archived inconsistent platforms ENCFF686UFX bigWig signal p-value ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF760BNV, ENCFF792GEI 877674478 ENCODE Processing Pipeline e5f38b54d9616165c439f0bc6172887e https://www.encodeproject.org/files/ENCFF686UFX/@@download/ENCFF686UFX.bigWig mm10-minimal archived inconsistent platforms ENCFF365ZMK bigWig signal p-value ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF646VKL, ENCFF760BNV, ENCFF792GEI 942907722 ENCODE Processing Pipeline 1108c25e0a7540ecbae2c9e622007e27 https://www.encodeproject.org/files/ENCFF365ZMK/@@download/ENCFF365ZMK.bigWig mm10-minimal archived inconsistent platforms ENCFF232JFJ bed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF760BNV, ENCFF792GEI 859997 ENCODE Processing Pipeline 47ffe5035c5bc7d1d6bbb765b5ab0662 https://www.encodeproject.org/files/ENCFF232JFJ/@@download/ENCFF232JFJ.bed.gz mm10-minimal archived inconsistent platforms ENCFF585LAD bed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF646VKL, ENCFF792GEI 912740 ENCODE Processing Pipeline c542fc7cc2f68ca81f768581c845f727 https://www.encodeproject.org/files/ENCFF585LAD/@@download/ENCFF585LAD.bed.gz mm10-minimal archived inconsistent platforms ENCFF415BIM bigBed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF232JFJ 2708625 ENCODE Processing Pipeline 944144c2989a6da09050e2d15267231b https://www.encodeproject.org/files/ENCFF415BIM/@@download/ENCFF415BIM.bigBed mm10-minimal archived inconsistent platforms ENCFF910TYE bigWig fold change over control ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF646VKL, ENCFF792GEI 875223546 ENCODE Processing Pipeline b7488a681f589dd069064982effe66c0 https://www.encodeproject.org/files/ENCFF910TYE/@@download/ENCFF910TYE.bigWig mm10-minimal archived inconsistent platforms ENCFF200DWT bigWig fold change over control ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF646VKL, ENCFF760BNV, ENCFF792GEI 1284139326 ENCODE Processing Pipeline 40fe0111729531c24d015c799a53c691 https://www.encodeproject.org/files/ENCFF200DWT/@@download/ENCFF200DWT.bigWig mm10-minimal archived inconsistent platforms ENCFF384BMO bed narrowPeak replicated peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF025LUS, ENCFF232JFJ, ENCFF585LAD 806405 ENCODE Processing Pipeline f69931fff2e0a6ec2b13701839339eba https://www.encodeproject.org/files/ENCFF384BMO/@@download/ENCFF384BMO.bed.gz mm10-minimal archived inconsistent platforms ENCFF735RZK bigWig fold change over control ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF760BNV, ENCFF792GEI 935348359 ENCODE Processing Pipeline 9b764bbbbe53506ae4414f7a51392d76 https://www.encodeproject.org/files/ENCFF735RZK/@@download/ENCFF735RZK.bigWig mm10-minimal archived inconsistent platforms ENCFF544USF bigBed narrowPeak replicated peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF384BMO 1859106 ENCODE Processing Pipeline 578bef6126175aed22b30aa2dec39b2c https://www.encodeproject.org/files/ENCFF544USF/@@download/ENCFF544USF.bigBed mm10-minimal archived inconsistent platforms ENCFF006BED bam unfiltered alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF131IIM 2743348353 ENCODE Processing Pipeline 9a720e9539c8211fa3a6b3bc2010f0fb https://www.encodeproject.org/files/ENCFF006BED/@@download/ENCFF006BED.bam mm10 released inconsistent platforms ENCFF453YHC bam unfiltered alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF243GMK 2312482253 ENCODE Processing Pipeline 70439b4610393d7b91293bac58c295ad https://www.encodeproject.org/files/ENCFF453YHC/@@download/ENCFF453YHC.bam mm10 released inconsistent platforms ENCFF201FOH bam alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF131IIM 1844425525 ENCODE Processing Pipeline 3fd802196f245c6f120f230e80506755 https://www.encodeproject.org/files/ENCFF201FOH/@@download/ENCFF201FOH.bam mm10 released inconsistent platforms ENCFF382CMT bam alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF243GMK 1601934097 ENCODE Processing Pipeline 59bc052153a1ae47f4d1d36266081098 https://www.encodeproject.org/files/ENCFF382CMT/@@download/ENCFF382CMT.bam mm10 released inconsistent platforms ENCFF685UME bed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF382CMT, ENCFF901RYX 839291 ENCODE Processing Pipeline 5bd23c714348820ef9b0bc1587b79d51 https://www.encodeproject.org/files/ENCFF685UME/@@download/ENCFF685UME.bed.gz mm10 released inconsistent platforms ENCFF253SLM bed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF201FOH, ENCFF382CMT, ENCFF880SQD, ENCFF901RYX 1024208 ENCODE Processing Pipeline 815bccdcd3690a8fde696f02540cc0f1 https://www.encodeproject.org/files/ENCFF253SLM/@@download/ENCFF253SLM.bed.gz mm10 released inconsistent platforms ENCFF774ROB bed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF201FOH, ENCFF880SQD 826168 ENCODE Processing Pipeline 15cf02e2e2dd4c0029d27a491cd3b6c2 https://www.encodeproject.org/files/ENCFF774ROB/@@download/ENCFF774ROB.bed.gz mm10 released inconsistent platforms ENCFF109BLM bigBed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF685UME 2674130 ENCODE Processing Pipeline ef64eb4fc222fdecb8c0a754d127a25f https://www.encodeproject.org/files/ENCFF109BLM/@@download/ENCFF109BLM.bigBed mm10 released inconsistent platforms ENCFF566VDQ bigBed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF774ROB 2626396 ENCODE Processing Pipeline 0f7ed56caee29437ac629dcf1c2925eb https://www.encodeproject.org/files/ENCFF566VDQ/@@download/ENCFF566VDQ.bigBed mm10 released inconsistent platforms ENCFF398MOX bigBed narrowPeak peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF253SLM 3089199 ENCODE Processing Pipeline 4909980554c5496523b96b46fce9d5d3 https://www.encodeproject.org/files/ENCFF398MOX/@@download/ENCFF398MOX.bigBed mm10 released inconsistent platforms ENCFF222DCK bigWig signal p-value ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF382CMT, ENCFF901RYX 622283160 ENCODE Processing Pipeline ebb60f8656b2a056f92766f1425eb012 https://www.encodeproject.org/files/ENCFF222DCK/@@download/ENCFF222DCK.bigWig mm10 released inconsistent platforms ENCFF979NFM bigWig signal p-value ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF201FOH, ENCFF880SQD 763595719 ENCODE Processing Pipeline 1b0dfbd5e559b2e8880321be82262b60 https://www.encodeproject.org/files/ENCFF979NFM/@@download/ENCFF979NFM.bigWig mm10 released inconsistent platforms ENCFF585UFC bigWig signal p-value ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF201FOH, ENCFF382CMT, ENCFF880SQD, ENCFF901RYX 1244176685 ENCODE Processing Pipeline f78e0d416c90011c356d783bbcfeb023 https://www.encodeproject.org/files/ENCFF585UFC/@@download/ENCFF585UFC.bigWig mm10 released inconsistent platforms ENCFF580MNK bigWig fold change over control ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF382CMT, ENCFF901RYX 678822767 ENCODE Processing Pipeline 96bfe5e72d997cfc46260bb44e562845 https://www.encodeproject.org/files/ENCFF580MNK/@@download/ENCFF580MNK.bigWig mm10 released inconsistent platforms ENCFF018UKS bigWig fold change over control ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF201FOH, ENCFF880SQD 716694491 ENCODE Processing Pipeline f06d4ee3dc622a463e119625c8588cac https://www.encodeproject.org/files/ENCFF018UKS/@@download/ENCFF018UKS.bigWig mm10 released inconsistent platforms ENCFF391DVK bigWig fold change over control ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF201FOH, ENCFF382CMT, ENCFF880SQD, ENCFF901RYX 1354875341 ENCODE Processing Pipeline e554dab15f247dbc1cfad99d3d4f351a https://www.encodeproject.org/files/ENCFF391DVK/@@download/ENCFF391DVK.bigWig mm10 released inconsistent platforms ENCFF091BOK bed narrowPeak replicated peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF253SLM, ENCFF685UME, ENCFF774ROB 801380 ENCODE Processing Pipeline b1077bcb217bc9f33044bfbea8deffa9 https://www.encodeproject.org/files/ENCFF091BOK/@@download/ENCFF091BOK.bed.gz mm10 released inconsistent platforms ENCFF910MMD bigBed narrowPeak replicated peaks ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF091BOK 1845628 ENCODE Processing Pipeline ec5cae2e7b41d020181eca6b91e47be0 https://www.encodeproject.org/files/ENCFF910MMD/@@download/ENCFF910MMD.bigBed mm10 released inconsistent platforms ENCFF001JZS bam alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KAE 315355023 Bing Ren, UCSD e14530b46a70209d9297d5ad2f626e82 https://www.encodeproject.org/files/ENCFF001JZS/@@download/ENCFF001JZS.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001JZT bam alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KAD 645407589 Bing Ren, UCSD 70c8a3cd61d5a431d4a8b8a85a705057 https://www.encodeproject.org/files/ENCFF001JZT/@@download/ENCFF001JZT.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001JZU bigBed broadPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XWD 436118 Bing Ren, UCSD 9b47fb1b06542fd8d28dc0909f097caf https://www.encodeproject.org/files/ENCFF001JZU/@@download/ENCFF001JZU.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001JZX bigWig signal ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001JZS, ENCFF001JZT 23375746 Bing Ren, UCSD f5ef85c4fef07c0ec16e4ca31752a7e8 https://www.encodeproject.org/files/ENCFF001JZX/@@download/ENCFF001JZX.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KAD fastq reads ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 855477527 Bing Ren, UCSD 80c3d6645c8a768ab31cda4693d9ec40 https://www.encodeproject.org/files/ENCFF001KAD/@@download/ENCFF001KAD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAK/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001KAE fastq reads ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 732446985 Bing Ren, UCSD 20ddf0647b8c570a7ec73df7ad03df50 https://www.encodeproject.org/files/ENCFF001KAE/@@download/ENCFF001KAE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAM/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001XWD bed broadPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001JZS, ENCFF001JZT 290721 Bing Ren, UCSD 65dded51883fadb7938ca9584d996657 https://www.encodeproject.org/files/ENCFF001XWD/@@download/ENCFF001XWD.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF014UNU bam unfiltered alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KAE, ENCFF018NEO 733295522 ENCODE Processing Pipeline 61da0dc38ca417aaf15efabd0b548d72 https://www.encodeproject.org/files/ENCFF014UNU/@@download/ENCFF014UNU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF346GQI bam unfiltered alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KAD, ENCFF018NEO 863474120 ENCODE Processing Pipeline fff862f76b23c605afc514bfc3ad037a https://www.encodeproject.org/files/ENCFF346GQI/@@download/ENCFF346GQI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF087DDW bam alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KAE, ENCFF018NEO 312943171 ENCODE Processing Pipeline 3129825bb9b597b35ff5abbcb15a256c https://www.encodeproject.org/files/ENCFF087DDW/@@download/ENCFF087DDW.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF693UTV bam alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KAD, ENCFF018NEO 516846534 ENCODE Processing Pipeline f6e1fbb48516a7ab097b31c657fe58b4 https://www.encodeproject.org/files/ENCFF693UTV/@@download/ENCFF693UTV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF827DGB bed narrowPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF087DDW, ENCFF111GKZ, ENCFF389ARL, ENCFF693UTV 915148 ENCODE Processing Pipeline a6c8939c5b4e7f3f13162ef15de155fc https://www.encodeproject.org/files/ENCFF827DGB/@@download/ENCFF827DGB.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF546IPU bigBed narrowPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF380KWP 2893024 ENCODE Processing Pipeline 2e34c1e009e2d5fb59d0611de8a50412 https://www.encodeproject.org/files/ENCFF546IPU/@@download/ENCFF546IPU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF303WWA bigBed narrowPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF827DGB 2559802 ENCODE Processing Pipeline d41e521869fcfe6800c1ba3d72933bbc https://www.encodeproject.org/files/ENCFF303WWA/@@download/ENCFF303WWA.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF478TKX bed narrowPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF087DDW, ENCFF111GKZ, ENCFF389ARL 721963 ENCODE Processing Pipeline f854221794fce1aac305f4291ff595ef https://www.encodeproject.org/files/ENCFF478TKX/@@download/ENCFF478TKX.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF380KWP bed narrowPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF693UTV 1040357 ENCODE Processing Pipeline 2ef2e70f62b70d175d18cdb86a7ee221 https://www.encodeproject.org/files/ENCFF380KWP/@@download/ENCFF380KWP.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF750SQZ bigBed narrowPeak peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF478TKX 2160340 ENCODE Processing Pipeline c36a4557d2e7e380ac6d63c9c9fefc4c https://www.encodeproject.org/files/ENCFF750SQZ/@@download/ENCFF750SQZ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF416LLO bigWig signal p-value ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF087DDW, ENCFF111GKZ, ENCFF389ARL 273700590 ENCODE Processing Pipeline b44fb23d78e3821cc347387bf80f5d37 https://www.encodeproject.org/files/ENCFF416LLO/@@download/ENCFF416LLO.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF009IUI bigWig signal p-value ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF693UTV 333164337 ENCODE Processing Pipeline 7068b82e075d3a92a77b87c0d21c6dd6 https://www.encodeproject.org/files/ENCFF009IUI/@@download/ENCFF009IUI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF110BJJ bigWig fold change over control ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF693UTV 165521877 ENCODE Processing Pipeline 58064b10b24964b790052a9be21e7563 https://www.encodeproject.org/files/ENCFF110BJJ/@@download/ENCFF110BJJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF009XAS bigWig signal p-value ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF087DDW, ENCFF111GKZ, ENCFF389ARL, ENCFF693UTV 272738276 ENCODE Processing Pipeline b5409ed873f60f9cd1b8c38af9bff9bc https://www.encodeproject.org/files/ENCFF009XAS/@@download/ENCFF009XAS.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF428PUP bigWig fold change over control ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF087DDW, ENCFF111GKZ, ENCFF389ARL 108162417 ENCODE Processing Pipeline ff88a5238fe477fcfce0daf35eddb5b7 https://www.encodeproject.org/files/ENCFF428PUP/@@download/ENCFF428PUP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF288SAJ bigWig fold change over control ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF087DDW, ENCFF111GKZ, ENCFF389ARL, ENCFF693UTV 215500848 ENCODE Processing Pipeline ef4d3b49173bcb04c164ce19c6e38350 https://www.encodeproject.org/files/ENCFF288SAJ/@@download/ENCFF288SAJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF831XNV bigBed narrowPeak replicated peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF026XUO 2010248 ENCODE Processing Pipeline 76c5b20f9429a4049fdc5e630434349e https://www.encodeproject.org/files/ENCFF831XNV/@@download/ENCFF831XNV.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF026XUO bed narrowPeak replicated peaks ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF380KWP, ENCFF478TKX, ENCFF827DGB 946285 ENCODE Processing Pipeline 188d6ab4dd6b8ca7945dffc18b6f38a2 https://www.encodeproject.org/files/ENCFF026XUO/@@download/ENCFF026XUO.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF001JXO bam alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001JYA 670772959 Bing Ren, UCSD 0db17c6ee7110eb122d1203c730a5225 https://www.encodeproject.org/files/ENCFF001JXO/@@download/ENCFF001JXO.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001JXP bigBed broadPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XVV 1589699 Bing Ren, UCSD 84db64055256c77d7ca2a994f1d0ea93 https://www.encodeproject.org/files/ENCFF001JXP/@@download/ENCFF001JXP.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001JXQ bam alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001JYB 858106747 Bing Ren, UCSD fac805c7184ac6964866cdd816f0e715 https://www.encodeproject.org/files/ENCFF001JXQ/@@download/ENCFF001JXQ.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001JXR bigWig signal ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001JXO, ENCFF001JXQ 72334323 Bing Ren, UCSD 67a3904f053eb9cc8b6dbb5a68e8f5f2 https://www.encodeproject.org/files/ENCFF001JXR/@@download/ENCFF001JXR.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001JYA fastq reads ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 801954426 Bing Ren, UCSD 8b0dd7d4d8b0ebf2f4db1eae7e4c03f9 https://www.encodeproject.org/files/ENCFF001JYA/@@download/ENCFF001JYA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYN/ released low read length insufficient read depth, control insufficient read depth ENCFF001JYB fastq reads ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 949836802 Bing Ren, UCSD 0423c1ed3f1a22171aa6450b1b251dd8 https://www.encodeproject.org/files/ENCFF001JYB/@@download/ENCFF001JYB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYM/ released low read length insufficient read depth, control insufficient read depth ENCFF001XVV bed broadPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001JXO, ENCFF001JXQ 816711 Bing Ren, UCSD d86a88762fd231c1e637f47e6a0b1c49 https://www.encodeproject.org/files/ENCFF001XVV/@@download/ENCFF001XVV.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF411DUI bam unfiltered alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JYA, ENCFF018NEO 911268658 ENCODE Processing Pipeline e9ebed065e500e2919690902cce9ff16 https://www.encodeproject.org/files/ENCFF411DUI/@@download/ENCFF411DUI.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF733SJA bam unfiltered alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JYB, ENCFF018NEO 1117001347 ENCODE Processing Pipeline a143cb4c23c7e75e34160e230e6fb838 https://www.encodeproject.org/files/ENCFF733SJA/@@download/ENCFF733SJA.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF057HUV bam alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JYA, ENCFF018NEO 589302339 ENCODE Processing Pipeline e23ed11570fa664ae7f9d353d46eafda https://www.encodeproject.org/files/ENCFF057HUV/@@download/ENCFF057HUV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF470SBJ bam alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JYB, ENCFF018NEO 718685068 ENCODE Processing Pipeline d6a670c002b032979781f9ce0e977490 https://www.encodeproject.org/files/ENCFF470SBJ/@@download/ENCFF470SBJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF038WHD bed narrowPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF470SBJ, ENCFF543ZVH 321292 ENCODE Processing Pipeline f2f591acc1b4e0f6cdba063f4c5751a1 https://www.encodeproject.org/files/ENCFF038WHD/@@download/ENCFF038WHD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF625RAP bed narrowPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF057HUV, ENCFF249NVZ, ENCFF543ZVH 3480787 ENCODE Processing Pipeline b7f2b025919feecc5cf0eeedd67b3dbd https://www.encodeproject.org/files/ENCFF625RAP/@@download/ENCFF625RAP.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF379HDJ bigBed narrowPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF625RAP 8123347 ENCODE Processing Pipeline 8fb44ebbc8f490bc22ad8f7bf2868ccb https://www.encodeproject.org/files/ENCFF379HDJ/@@download/ENCFF379HDJ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF032ZLD bed narrowPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF057HUV, ENCFF249NVZ, ENCFF470SBJ, ENCFF543ZVH 1176273 ENCODE Processing Pipeline 56369356ddff4722b7906c3fb9cf2dcd https://www.encodeproject.org/files/ENCFF032ZLD/@@download/ENCFF032ZLD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF885CHM bigBed narrowPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF032ZLD 3031721 ENCODE Processing Pipeline 60690496304b0332c77797e67961a849 https://www.encodeproject.org/files/ENCFF885CHM/@@download/ENCFF885CHM.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF580UUU bigBed narrowPeak peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF038WHD 810229 ENCODE Processing Pipeline 1f616cb04e8383d5e750a958275b7d2f https://www.encodeproject.org/files/ENCFF580UUU/@@download/ENCFF580UUU.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF674VTA bigWig signal p-value ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF057HUV, ENCFF249NVZ, ENCFF543ZVH 309026003 ENCODE Processing Pipeline d2d4465aaa0c727aa4bfd75a399e0441 https://www.encodeproject.org/files/ENCFF674VTA/@@download/ENCFF674VTA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF544WJI bigWig signal p-value ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF470SBJ, ENCFF543ZVH 173995119 ENCODE Processing Pipeline 5a2574195c0f4718799cd9fe333066cd https://www.encodeproject.org/files/ENCFF544WJI/@@download/ENCFF544WJI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF557LTZ bigWig signal p-value ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF057HUV, ENCFF249NVZ, ENCFF470SBJ, ENCFF543ZVH 342447240 ENCODE Processing Pipeline 98c5af70861941ffdce939aca4b13f29 https://www.encodeproject.org/files/ENCFF557LTZ/@@download/ENCFF557LTZ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF584AQN bigWig fold change over control ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF057HUV, ENCFF249NVZ, ENCFF543ZVH 229540453 ENCODE Processing Pipeline 3fe7876a3f9e25553267d5c2dcb9d32a https://www.encodeproject.org/files/ENCFF584AQN/@@download/ENCFF584AQN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF674MJE bigWig fold change over control ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF470SBJ, ENCFF543ZVH 280189898 ENCODE Processing Pipeline a2a648a4860bb5e3378f88551220ebfa https://www.encodeproject.org/files/ENCFF674MJE/@@download/ENCFF674MJE.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF518BJU bigWig fold change over control ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF057HUV, ENCFF249NVZ, ENCFF470SBJ, ENCFF543ZVH 501948147 ENCODE Processing Pipeline a0ca39d952eba142502ba762a80599aa https://www.encodeproject.org/files/ENCFF518BJU/@@download/ENCFF518BJU.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF699MDE bed narrowPeak replicated peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF032ZLD, ENCFF038WHD, ENCFF625RAP 957988 ENCODE Processing Pipeline f755d2befcfb1b6d71b7d8ff13d4350e https://www.encodeproject.org/files/ENCFF699MDE/@@download/ENCFF699MDE.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF448MQU bigBed narrowPeak replicated peaks ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF699MDE 2003812 ENCODE Processing Pipeline 7e7d6156fb5392572c50154ebe280fd2 https://www.encodeproject.org/files/ENCFF448MQU/@@download/ENCFF448MQU.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF454VLS fastq reads ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1997467032 Bing Ren, UCSD ad99716f1f295178f9a5bb632b914279 SRA:SRR3652854 https://www.encodeproject.org/files/ENCFF454VLS/@@download/ENCFF454VLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released mild to moderate bottlenecking, inconsistent platforms ENCFF397QZC fastq reads ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2350210942 Bing Ren, UCSD 18e70cd087c5440307aeb3ae5af55fd6 SRA:SRR3652853 https://www.encodeproject.org/files/ENCFF397QZC/@@download/ENCFF397QZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released mild to moderate bottlenecking, inconsistent platforms ENCFF712BCY bam alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF454VLS, ENCFF806TVZ 1662099318 ENCODE Processing Pipeline c75de1680f5fc6402b17787c64a08d97 https://www.encodeproject.org/files/ENCFF712BCY/@@download/ENCFF712BCY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF236LMZ bam alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF397QZC, ENCFF806TVZ 1940761682 ENCODE Processing Pipeline 2e7f7b334aec9db1f0e8c0e82f4e0675 https://www.encodeproject.org/files/ENCFF236LMZ/@@download/ENCFF236LMZ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF186SQH bed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF236LMZ, ENCFF712BCY, ENCFF792GEI 1771320 ENCODE Processing Pipeline 0efe40677f8b8917e935748910653dff https://www.encodeproject.org/files/ENCFF186SQH/@@download/ENCFF186SQH.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF250RIZ bed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF712BCY, ENCFF792GEI 1579595 ENCODE Processing Pipeline 64cd238a444129415b08fbc4f7b99a1a https://www.encodeproject.org/files/ENCFF250RIZ/@@download/ENCFF250RIZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF246YXS bigBed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF250RIZ 4601585 ENCODE Processing Pipeline 7bf3cd9d471c617d18714341abb671d1 https://www.encodeproject.org/files/ENCFF246YXS/@@download/ENCFF246YXS.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF129FJM bigBed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF934HHT 4650517 ENCODE Processing Pipeline 092945551c68fba43762f6dd5f481e78 https://www.encodeproject.org/files/ENCFF129FJM/@@download/ENCFF129FJM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF636JWW bigWig signal p-value ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF236LMZ, ENCFF792GEI 854790066 ENCODE Processing Pipeline 2cedabcbe1a1769bdd8a202aa63ba355 https://www.encodeproject.org/files/ENCFF636JWW/@@download/ENCFF636JWW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF934HHT bed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF236LMZ, ENCFF792GEI 1595436 ENCODE Processing Pipeline cfbea52a8547fac2b3eb9566880f95ba https://www.encodeproject.org/files/ENCFF934HHT/@@download/ENCFF934HHT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF847CBH bigWig signal p-value ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF712BCY, ENCFF792GEI 855584370 ENCODE Processing Pipeline 625e80fe35205090621c6dcae58470d4 https://www.encodeproject.org/files/ENCFF847CBH/@@download/ENCFF847CBH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF494ZFK bigWig signal p-value ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF236LMZ, ENCFF712BCY, ENCFF792GEI 1016832855 ENCODE Processing Pipeline e23376b3645207ea448356dfbf43ceae https://www.encodeproject.org/files/ENCFF494ZFK/@@download/ENCFF494ZFK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF223IXH bigBed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF186SQH 5041962 ENCODE Processing Pipeline 10b3dfe9a44603d1a71f8c23b4a87bd4 https://www.encodeproject.org/files/ENCFF223IXH/@@download/ENCFF223IXH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF432RYV bigWig fold change over control ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF236LMZ, ENCFF792GEI 960144395 ENCODE Processing Pipeline 4b2efe7d25862920360f0cbf0bdd0cea https://www.encodeproject.org/files/ENCFF432RYV/@@download/ENCFF432RYV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF928VWW bigWig fold change over control ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF712BCY, ENCFF792GEI 925541877 ENCODE Processing Pipeline f2a3fc35373531a831f35667ced58898 https://www.encodeproject.org/files/ENCFF928VWW/@@download/ENCFF928VWW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF991LSA bigWig fold change over control ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF236LMZ, ENCFF712BCY, ENCFF792GEI 1327532104 ENCODE Processing Pipeline 6d0a553f173dc47c1cf125aca4899fec https://www.encodeproject.org/files/ENCFF991LSA/@@download/ENCFF991LSA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF836MLE bigBed narrowPeak replicated peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF051NIF 3346793 ENCODE Processing Pipeline b18b58957f78d51cba353475fc2be482 https://www.encodeproject.org/files/ENCFF836MLE/@@download/ENCFF836MLE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF051NIF bed narrowPeak replicated peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF186SQH, ENCFF250RIZ, ENCFF934HHT 1537639 ENCODE Processing Pipeline 94bc6f9ea03dbe2c613894032f848105 https://www.encodeproject.org/files/ENCFF051NIF/@@download/ENCFF051NIF.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF952NHF bam unfiltered alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF397QZC 2773782152 ENCODE Processing Pipeline 183bf91f9d3840d2c4794f40dad869c2 https://www.encodeproject.org/files/ENCFF952NHF/@@download/ENCFF952NHF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF608YNE bam unfiltered alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF454VLS 2354370636 ENCODE Processing Pipeline e6967fdf1d5b34d41427b21b58d1a5aa https://www.encodeproject.org/files/ENCFF608YNE/@@download/ENCFF608YNE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF236VKK bam alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF397QZC 1940488470 ENCODE Processing Pipeline 6f6f52052c21f76277dcaae359b72255 https://www.encodeproject.org/files/ENCFF236VKK/@@download/ENCFF236VKK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF761HMI bam alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF454VLS 1661887053 ENCODE Processing Pipeline 6319d2ad00831319012aec72e397ea08 https://www.encodeproject.org/files/ENCFF761HMI/@@download/ENCFF761HMI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF692WUH bed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF761HMI, ENCFF901RYX 1532309 ENCODE Processing Pipeline 898ecb59fa2612106827694a933eb799 https://www.encodeproject.org/files/ENCFF692WUH/@@download/ENCFF692WUH.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF958JLP bed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF236VKK, ENCFF880SQD 1411294 ENCODE Processing Pipeline 9788d82aa4f79389481d58a67e488e48 https://www.encodeproject.org/files/ENCFF958JLP/@@download/ENCFF958JLP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF640GKJ bed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236VKK, ENCFF761HMI, ENCFF880SQD, ENCFF901RYX 1766158 ENCODE Processing Pipeline e7ca5d213553d4e67f53ab8cc3b146c0 https://www.encodeproject.org/files/ENCFF640GKJ/@@download/ENCFF640GKJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF430QEN bigBed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF692WUH 4489939 ENCODE Processing Pipeline a815d10be0604f60521a12f111a30ec2 https://www.encodeproject.org/files/ENCFF430QEN/@@download/ENCFF430QEN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF452QNB bigBed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF958JLP 4167474 ENCODE Processing Pipeline 45d3a8bd9a13632bc74c2fdafc87a437 https://www.encodeproject.org/files/ENCFF452QNB/@@download/ENCFF452QNB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF556BJW bigBed narrowPeak peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF640GKJ 5023194 ENCODE Processing Pipeline ef9d5cf653b9fd26cc163cdf851e7ce6 https://www.encodeproject.org/files/ENCFF556BJW/@@download/ENCFF556BJW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF034RLI bigWig signal p-value ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF761HMI, ENCFF901RYX 782390851 ENCODE Processing Pipeline ea754db91a84597ea352c463c1bc0471 https://www.encodeproject.org/files/ENCFF034RLI/@@download/ENCFF034RLI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF634MTU bigWig signal p-value ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF236VKK, ENCFF880SQD 697470092 ENCODE Processing Pipeline 9b138914527e3d089971e706e5204143 https://www.encodeproject.org/files/ENCFF634MTU/@@download/ENCFF634MTU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF499FHB bigWig signal p-value ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236VKK, ENCFF761HMI, ENCFF880SQD, ENCFF901RYX 1118888952 ENCODE Processing Pipeline 0ee07882b13bf7a7181311f4bd4cb248 https://www.encodeproject.org/files/ENCFF499FHB/@@download/ENCFF499FHB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF638ZJQ bigWig fold change over control ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF761HMI, ENCFF901RYX 712561922 ENCODE Processing Pipeline c87a965ef045d24c625172e549187b3a https://www.encodeproject.org/files/ENCFF638ZJQ/@@download/ENCFF638ZJQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF547PUC bigWig fold change over control ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF236VKK, ENCFF880SQD 771157249 ENCODE Processing Pipeline 8a61ccdaf84880e6fcbb3cc36f9e9aa0 https://www.encodeproject.org/files/ENCFF547PUC/@@download/ENCFF547PUC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF440SCC bigWig fold change over control ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236VKK, ENCFF761HMI, ENCFF880SQD, ENCFF901RYX 1407322016 ENCODE Processing Pipeline b0ecfa8a50c07a990a0bbdba4a55a9cf https://www.encodeproject.org/files/ENCFF440SCC/@@download/ENCFF440SCC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF366XXD bed narrowPeak replicated peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF640GKJ, ENCFF692WUH, ENCFF958JLP 1450740 ENCODE Processing Pipeline 5618fac80ea90726dbd4937edd6030f0 https://www.encodeproject.org/files/ENCFF366XXD/@@download/ENCFF366XXD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF484IHT bigBed narrowPeak replicated peaks ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF366XXD 3161426 ENCODE Processing Pipeline 7c786a01d51bd7038ff87ebe39942ecf https://www.encodeproject.org/files/ENCFF484IHT/@@download/ENCFF484IHT.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001KGB bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KGL 409808794 Bing Ren, UCSD df9fe8f2752797e7648a6c73c8ac2c7c https://www.encodeproject.org/files/ENCFF001KGB/@@download/ENCFF001KGB.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF001KGC bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KGJ 448200705 Bing Ren, UCSD e7db0c887e7f4734c3d5d50bc181ee15 https://www.encodeproject.org/files/ENCFF001KGC/@@download/ENCFF001KGC.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF001KGD bigBed broadPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXA 378062 Bing Ren, UCSD a8e480fdea9790ed81e755564dc3ee1e https://www.encodeproject.org/files/ENCFF001KGD/@@download/ENCFF001KGD.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF001KGG bigWig signal ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGB, ENCFF001KGC 18064252 Bing Ren, UCSD bbec8ad6982027b66ba66a3159680793 https://www.encodeproject.org/files/ENCFF001KGG/@@download/ENCFF001KGG.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF001KGJ fastq reads ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 565840272 Bing Ren, UCSD 413e641cc021e5e02ea009e4809b3b5a https://www.encodeproject.org/files/ENCFF001KGJ/@@download/ENCFF001KGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIO/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF001KGL fastq reads ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 503110844 Bing Ren, UCSD ba3be214346933e44743391ace108a8c https://www.encodeproject.org/files/ENCFF001KGL/@@download/ENCFF001KGL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIU/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF001XXA bed broadPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGB, ENCFF001KGC 256427 Bing Ren, UCSD 01a7a5c0721729400bcd06f4c6fd5fa9 https://www.encodeproject.org/files/ENCFF001XXA/@@download/ENCFF001XXA.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF773SAG bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KGL, ENCFF806TVZ 353362412 ENCODE Processing Pipeline bda6d2cc54ff8cd57e89e5a2bb357248 https://www.encodeproject.org/files/ENCFF773SAG/@@download/ENCFF773SAG.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF453PWP bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KGJ, ENCFF806TVZ 327192486 ENCODE Processing Pipeline 2465abbd000d3503a33a1bde3ab5b6a6 https://www.encodeproject.org/files/ENCFF453PWP/@@download/ENCFF453PWP.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF304QUX bed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF773SAG 677193 ENCODE Processing Pipeline 46e4ecca107d867dbb597d1157530d39 https://www.encodeproject.org/files/ENCFF304QUX/@@download/ENCFF304QUX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF742YYQ bed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF419RGB, ENCFF452QHE, ENCFF453PWP, ENCFF773SAG 667150 ENCODE Processing Pipeline aca52a1f29fbf941074bc23419f10690 https://www.encodeproject.org/files/ENCFF742YYQ/@@download/ENCFF742YYQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF600GCF bed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF419RGB, ENCFF452QHE, ENCFF453PWP 628938 ENCODE Processing Pipeline dc9bd29e7661ccb6667a315a997b4bcf https://www.encodeproject.org/files/ENCFF600GCF/@@download/ENCFF600GCF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF347QNY bigBed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF304QUX 2121075 ENCODE Processing Pipeline 534aad9edf358867cf7b924b41ef3fcb https://www.encodeproject.org/files/ENCFF347QNY/@@download/ENCFF347QNY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF155CBZ bigWig signal p-value ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF419RGB, ENCFF452QHE, ENCFF453PWP, ENCFF773SAG 282530475 ENCODE Processing Pipeline 7dd2d96816b1729824ae259b7ba5d0e7 https://www.encodeproject.org/files/ENCFF155CBZ/@@download/ENCFF155CBZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF818XUQ bigWig signal p-value ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF773SAG 274362621 ENCODE Processing Pipeline 9bdb17185bbbb2ba2028d5f7ee04d3ad https://www.encodeproject.org/files/ENCFF818XUQ/@@download/ENCFF818XUQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF346BOF bigWig fold change over control ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF419RGB, ENCFF452QHE, ENCFF453PWP, ENCFF773SAG 170300790 ENCODE Processing Pipeline 1dc915dea331f303cd76bed313708217 https://www.encodeproject.org/files/ENCFF346BOF/@@download/ENCFF346BOF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF859VXF bigBed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF742YYQ 2041302 ENCODE Processing Pipeline bf71c1b7113f8f1313f66b51ac2ef88b https://www.encodeproject.org/files/ENCFF859VXF/@@download/ENCFF859VXF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF658HEY bigWig fold change over control ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF773SAG 122184586 ENCODE Processing Pipeline 419292b3e84af85a84af9d9d533e4472 https://www.encodeproject.org/files/ENCFF658HEY/@@download/ENCFF658HEY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF974EMC bed narrowPeak replicated peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF304QUX, ENCFF600GCF, ENCFF742YYQ 852390 ENCODE Processing Pipeline 4f9f5ff9416c4afb9eaef008e8120819 https://www.encodeproject.org/files/ENCFF974EMC/@@download/ENCFF974EMC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF025KAT bigBed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF600GCF 2009776 ENCODE Processing Pipeline 149f341b596f7671a854b2f82fdffdf2 https://www.encodeproject.org/files/ENCFF025KAT/@@download/ENCFF025KAT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF852JMW bigWig signal p-value ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF419RGB, ENCFF452QHE, ENCFF453PWP 230364097 ENCODE Processing Pipeline 4f6aa002fc520d51cc96107278c8590e https://www.encodeproject.org/files/ENCFF852JMW/@@download/ENCFF852JMW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF036ZAB bigBed narrowPeak replicated peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF974EMC 1908947 ENCODE Processing Pipeline 6bb18770854f01ba8bd39f8e84f9412c https://www.encodeproject.org/files/ENCFF036ZAB/@@download/ENCFF036ZAB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF362GMO bigWig fold change over control ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF419RGB, ENCFF452QHE, ENCFF453PWP 91950050 ENCODE Processing Pipeline 728e9177fbb0960d76d1a67678ea5701 https://www.encodeproject.org/files/ENCFF362GMO/@@download/ENCFF362GMO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF297NEG bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGJ, ENCFF018NEO 327244222 ENCODE Processing Pipeline 3479fd32fdb0fb3e29808303f33ce264 https://www.encodeproject.org/files/ENCFF297NEG/@@download/ENCFF297NEG.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF656OFZ bam unfiltered alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGJ, ENCFF018NEO 514961712 ENCODE Processing Pipeline 2f24dd2aab6057e32b35a662ef1a3936 https://www.encodeproject.org/files/ENCFF656OFZ/@@download/ENCFF656OFZ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF198IHG bam unfiltered alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGL, ENCFF018NEO 490032077 ENCODE Processing Pipeline a54e3a372389d3fd2ce75eb12c842d91 https://www.encodeproject.org/files/ENCFF198IHG/@@download/ENCFF198IHG.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF169GZC bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGL, ENCFF018NEO 353381641 ENCODE Processing Pipeline b32faf9a87a7c8e629c43abff827ff6e https://www.encodeproject.org/files/ENCFF169GZC/@@download/ENCFF169GZC.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF197NKV bigBed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF959NHW 1970918 ENCODE Processing Pipeline e5d724bde726893d6d0f28464ab4ceb7 https://www.encodeproject.org/files/ENCFF197NKV/@@download/ENCFF197NKV.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF982WRQ bed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF297NEG, ENCFF842YLI, ENCFF951GMQ 629750 ENCODE Processing Pipeline 26bb7cf36d495633ecc2c08dbc5c726d https://www.encodeproject.org/files/ENCFF982WRQ/@@download/ENCFF982WRQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF255JSM bed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF169GZC, ENCFF297NEG, ENCFF842YLI, ENCFF951GMQ 667473 ENCODE Processing Pipeline 6120d87a22a6f21a14ed44d5d8733dc1 https://www.encodeproject.org/files/ENCFF255JSM/@@download/ENCFF255JSM.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF495UBY bigWig fold change over control ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF297NEG, ENCFF842YLI, ENCFF951GMQ 91796946 ENCODE Processing Pipeline 0f2c0d7f5631eba129932109eeb1f74a https://www.encodeproject.org/files/ENCFF495UBY/@@download/ENCFF495UBY.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF959NHW bed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF169GZC, ENCFF842YLI 608584 ENCODE Processing Pipeline 5e0afc7219f4275b7d20dc0dae8131f5 https://www.encodeproject.org/files/ENCFF959NHW/@@download/ENCFF959NHW.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF743UFJ bigBed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF255JSM 2042950 ENCODE Processing Pipeline b45c837b1aa6bce47ba2082600b3bdb8 https://www.encodeproject.org/files/ENCFF743UFJ/@@download/ENCFF743UFJ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF909GRF bigWig signal p-value ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF297NEG, ENCFF842YLI, ENCFF951GMQ 240500010 ENCODE Processing Pipeline 5c8b646fd735ecb12a05047194634258 https://www.encodeproject.org/files/ENCFF909GRF/@@download/ENCFF909GRF.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF232JLU bigWig signal p-value ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF169GZC, ENCFF842YLI 168285097 ENCODE Processing Pipeline a17ab80cd97182df138e461054123de8 https://www.encodeproject.org/files/ENCFF232JLU/@@download/ENCFF232JLU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF183LUH bigWig fold change over control ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF169GZC, ENCFF842YLI 102073707 ENCODE Processing Pipeline acacd7fc2d255f4b310cd16d0a7de174 https://www.encodeproject.org/files/ENCFF183LUH/@@download/ENCFF183LUH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF479GFA bigBed narrowPeak peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF982WRQ 2011792 ENCODE Processing Pipeline 475712bb6cb49f73c73b6697c34cef5b https://www.encodeproject.org/files/ENCFF479GFA/@@download/ENCFF479GFA.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF227BHG bigWig fold change over control ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF169GZC, ENCFF297NEG, ENCFF842YLI, ENCFF951GMQ 169945904 ENCODE Processing Pipeline 3604efd79a07778a611e5a515c6a0517 https://www.encodeproject.org/files/ENCFF227BHG/@@download/ENCFF227BHG.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF861SQU bigWig signal p-value ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF169GZC, ENCFF297NEG, ENCFF842YLI, ENCFF951GMQ 282538769 ENCODE Processing Pipeline 2a631026d8a23ffdf1c54247656136e0 https://www.encodeproject.org/files/ENCFF861SQU/@@download/ENCFF861SQU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF102NPI bed narrowPeak replicated peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF255JSM, ENCFF959NHW, ENCFF982WRQ 844148 ENCODE Processing Pipeline b9d4324f9e6b936cbcc225aeb63fe72a https://www.encodeproject.org/files/ENCFF102NPI/@@download/ENCFF102NPI.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF536XJH bigBed narrowPeak replicated peaks ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF102NPI 1894366 ENCODE Processing Pipeline a0cfd8a5cec4d30a1e7469cdeb8630d6 https://www.encodeproject.org/files/ENCFF536XJH/@@download/ENCFF536XJH.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF002BXH fastq reads ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1441652823 Bing Ren, UCSD e5560b83e3c5050d602f2b5936850dc7 SRA:SRR3651796 https://www.encodeproject.org/files/ENCFF002BXH/@@download/ENCFF002BXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXY/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002BWX fastq reads ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1105336220 Bing Ren, UCSD cc8cd8fb7d6f2396528ed5d433ace68f SRA:SRR3651795 https://www.encodeproject.org/files/ENCFF002BWX/@@download/ENCFF002BWX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYA/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF645LUJ bam alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXH, ENCFF806TVZ 1065341441 ENCODE Processing Pipeline 722e95fe038bfef75f86bbc068f672d5 https://www.encodeproject.org/files/ENCFF645LUJ/@@download/ENCFF645LUJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF257YGV bam alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWX, ENCFF806TVZ 855985172 ENCODE Processing Pipeline 6643808df7ee9e517e695dca11e84e97 https://www.encodeproject.org/files/ENCFF257YGV/@@download/ENCFF257YGV.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF460OSQ bed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF257YGV 597913 ENCODE Processing Pipeline c71709f21b49e461c05c91f03ea947e5 https://www.encodeproject.org/files/ENCFF460OSQ/@@download/ENCFF460OSQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF992WYW bed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF645LUJ 640739 ENCODE Processing Pipeline 7fdb8f7cb7b9f503f1251a5fe2d7b327 https://www.encodeproject.org/files/ENCFF992WYW/@@download/ENCFF992WYW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF709IHQ bigBed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF460OSQ 1909205 ENCODE Processing Pipeline b47809c4e6f57c6bb68ccca571b9b61a https://www.encodeproject.org/files/ENCFF709IHQ/@@download/ENCFF709IHQ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF194GAC bed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF257YGV, ENCFF645LUJ 600620 ENCODE Processing Pipeline b12468846c34a8f46669ce89dad92f04 https://www.encodeproject.org/files/ENCFF194GAC/@@download/ENCFF194GAC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF714YDP bigBed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF992WYW 2031412 ENCODE Processing Pipeline eccfba1ea92b72213c6ca317fafb0f60 https://www.encodeproject.org/files/ENCFF714YDP/@@download/ENCFF714YDP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF877HLK bigWig signal p-value ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF257YGV 461908878 ENCODE Processing Pipeline 46ae015babedc409550bae00c5637f04 https://www.encodeproject.org/files/ENCFF877HLK/@@download/ENCFF877HLK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF486KUU bigBed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF194GAC 1882187 ENCODE Processing Pipeline 55334bbb4cff71082711aac6efbcdd46 https://www.encodeproject.org/files/ENCFF486KUU/@@download/ENCFF486KUU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF951JBS bigWig signal p-value ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF645LUJ 509074653 ENCODE Processing Pipeline 5e2edf88fa86f50b671695372760578b https://www.encodeproject.org/files/ENCFF951JBS/@@download/ENCFF951JBS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF258CLE bigWig fold change over control ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF645LUJ 408621456 ENCODE Processing Pipeline 76c3532693eaebb9551e155e7b79bba5 https://www.encodeproject.org/files/ENCFF258CLE/@@download/ENCFF258CLE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF240PUU bigWig fold change over control ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF257YGV, ENCFF645LUJ 603689673 ENCODE Processing Pipeline 274d0a15a52a2c18dca6538c91d8404a https://www.encodeproject.org/files/ENCFF240PUU/@@download/ENCFF240PUU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF885IUB bigWig signal p-value ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF257YGV, ENCFF645LUJ 477326283 ENCODE Processing Pipeline 9bb6fca7f14fb5ed65cc6a71c9b6d6a2 https://www.encodeproject.org/files/ENCFF885IUB/@@download/ENCFF885IUB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF981QKI bigWig fold change over control ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF257YGV 347429526 ENCODE Processing Pipeline 9cab40d3e9dff2d888ded5a770de0c96 https://www.encodeproject.org/files/ENCFF981QKI/@@download/ENCFF981QKI.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF574YXI bed narrowPeak replicated peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF194GAC, ENCFF460OSQ, ENCFF992WYW 776310 ENCODE Processing Pipeline 11783d88a53c175255421e0e1bf9dbb9 https://www.encodeproject.org/files/ENCFF574YXI/@@download/ENCFF574YXI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF838NIR bigBed narrowPeak replicated peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF574YXI 1802826 ENCODE Processing Pipeline beeb7646285577c6bc8c5f41c46b2d01 https://www.encodeproject.org/files/ENCFF838NIR/@@download/ENCFF838NIR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF411LZZ bam unfiltered alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXH, ENCFF018NEO 1689002891 ENCODE Processing Pipeline 7810991b6c1664b36507445a31d79521 https://www.encodeproject.org/files/ENCFF411LZZ/@@download/ENCFF411LZZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF620BKI bam unfiltered alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWX, ENCFF018NEO 1299504755 ENCODE Processing Pipeline 59b14301abd31690afdc2659667a3137 https://www.encodeproject.org/files/ENCFF620BKI/@@download/ENCFF620BKI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF844DSD bam alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWX, ENCFF018NEO 855887300 ENCODE Processing Pipeline a8cece301dff5775efd9c2525ab642e1 https://www.encodeproject.org/files/ENCFF844DSD/@@download/ENCFF844DSD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF437ESL bam alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXH, ENCFF018NEO 1065209360 ENCODE Processing Pipeline b3a48e88327343e02550c8cd3ef2b6e9 https://www.encodeproject.org/files/ENCFF437ESL/@@download/ENCFF437ESL.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF816VRX bed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF437ESL, ENCFF855ISH 521128 ENCODE Processing Pipeline 02db2bfbdda158b65f033f3fd5d9eb7f https://www.encodeproject.org/files/ENCFF816VRX/@@download/ENCFF816VRX.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF740QTT bed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF844DSD, ENCFF855ISH 594054 ENCODE Processing Pipeline d5a4908010a48a52ffdca23ca29aa976 https://www.encodeproject.org/files/ENCFF740QTT/@@download/ENCFF740QTT.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF202KSH bed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF437ESL, ENCFF844DSD, ENCFF855ISH 600873 ENCODE Processing Pipeline d4f348d99d2f6d51665e3a9d2f9be5bd https://www.encodeproject.org/files/ENCFF202KSH/@@download/ENCFF202KSH.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF746IXZ bigBed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF816VRX 1739150 ENCODE Processing Pipeline 4f95800528dbea7a93954e55a6de70c5 https://www.encodeproject.org/files/ENCFF746IXZ/@@download/ENCFF746IXZ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF640GTB bigBed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF202KSH 1884097 ENCODE Processing Pipeline ed0c56cb7882181fe900f053304467b4 https://www.encodeproject.org/files/ENCFF640GTB/@@download/ENCFF640GTB.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF296RFK bigBed narrowPeak peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF740QTT 1896382 ENCODE Processing Pipeline c9c186b192c0b0106d0c263483cc65fc https://www.encodeproject.org/files/ENCFF296RFK/@@download/ENCFF296RFK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF286IPP bigWig signal p-value ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF844DSD, ENCFF855ISH 383436812 ENCODE Processing Pipeline 37876338377e35d5e14db8ef66535f1a https://www.encodeproject.org/files/ENCFF286IPP/@@download/ENCFF286IPP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF399FBF bigWig signal p-value ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF437ESL, ENCFF855ISH 261898641 ENCODE Processing Pipeline c6de4c2b4b4ee520a1b10d84a72e0986 https://www.encodeproject.org/files/ENCFF399FBF/@@download/ENCFF399FBF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF334GMG bigWig signal p-value ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF437ESL, ENCFF844DSD, ENCFF855ISH 477317235 ENCODE Processing Pipeline 5d9c5313bc9e846fc5783e7d677f3bfe https://www.encodeproject.org/files/ENCFF334GMG/@@download/ENCFF334GMG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF614TMB bigWig fold change over control ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF844DSD, ENCFF855ISH 350458240 ENCODE Processing Pipeline a801237f3b1e398bdf4c212756ed7087 https://www.encodeproject.org/files/ENCFF614TMB/@@download/ENCFF614TMB.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF941JTG bigWig fold change over control ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF437ESL, ENCFF855ISH 319015407 ENCODE Processing Pipeline b2384b6d4f6effd45e1511d0a9cd3faf https://www.encodeproject.org/files/ENCFF941JTG/@@download/ENCFF941JTG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF389JEL bigWig fold change over control ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF437ESL, ENCFF844DSD, ENCFF855ISH 603641490 ENCODE Processing Pipeline 8d460fe006de8d0b28f33036b4dc2b10 https://www.encodeproject.org/files/ENCFF389JEL/@@download/ENCFF389JEL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF246QSQ bed narrowPeak replicated peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF202KSH, ENCFF740QTT, ENCFF816VRX 759010 ENCODE Processing Pipeline 3c298bad8dd30ef55fa22c70df13474f https://www.encodeproject.org/files/ENCFF246QSQ/@@download/ENCFF246QSQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF187MDC bigBed narrowPeak replicated peaks ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF246QSQ 1767471 ENCODE Processing Pipeline 53b16a56c4001145c818a27c2b38bc15 https://www.encodeproject.org/files/ENCFF187MDC/@@download/ENCFF187MDC.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002APN fastq reads ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 268127564 Bing Ren, UCSD 9ed4332155e5c08812fadcd7f3d65f54 SRA:SRR3651900 https://www.encodeproject.org/files/ENCFF002APN/@@download/ENCFF002APN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARB/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002APP fastq reads ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 36 single-ended 1147096157 Bing Ren, UCSD ce103cf8f0508912bd70286d1216a0c9 SRA:SRR3651901 https://www.encodeproject.org/files/ENCFF002APP/@@download/ENCFF002APP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARB/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002APO fastq reads ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 404304677 Bing Ren, UCSD c026dcfa3e53befd8287f36912d50808 SRA:SRR3651898 https://www.encodeproject.org/files/ENCFF002APO/@@download/ENCFF002APO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002AQB fastq reads ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 2 50 single-ended 4015983369 Bing Ren, UCSD 06822759d2d27c992fe5f0d0694c9bee SRA:SRR3651899 https://www.encodeproject.org/files/ENCFF002AQB/@@download/ENCFF002AQB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQW/ released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF002APY fastq reads ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 3 50 single-ended 3605228721 Bing Ren, UCSD e2c8c8e9e34346b559bf9e740103bd06 SRA:SRR3651902 https://www.encodeproject.org/files/ENCFF002APY/@@download/ENCFF002APY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARB/ released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF361URL bam alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002APN, ENCFF002APP, ENCFF002APY, ENCFF806TVZ 2213559195 ENCODE Processing Pipeline 8d451b6a4615a2dd6c7da1a42fafb2f2 https://www.encodeproject.org/files/ENCFF361URL/@@download/ENCFF361URL.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF939YFF bam alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002APO, ENCFF002AQB, ENCFF806TVZ 2018513756 ENCODE Processing Pipeline 092b8bf55573e07f0a02e9bfbd0887c7 https://www.encodeproject.org/files/ENCFF939YFF/@@download/ENCFF939YFF.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF412OOX bed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF261VSL, ENCFF819FNM, ENCFF939YFF 718798 ENCODE Processing Pipeline fa2470885ba329b6be08b32374edea51 https://www.encodeproject.org/files/ENCFF412OOX/@@download/ENCFF412OOX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF828ACI bed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF261VSL, ENCFF361URL, ENCFF819FNM 607913 ENCODE Processing Pipeline bbe14f7abdd42c2d88f228c7d5e111c4 https://www.encodeproject.org/files/ENCFF828ACI/@@download/ENCFF828ACI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF227HXZ bigBed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF828ACI 1115953 ENCODE Processing Pipeline 6607d8f3d3155a035c29195c8116e2fb https://www.encodeproject.org/files/ENCFF227HXZ/@@download/ENCFF227HXZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF950DHZ bigBed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF412OOX 1267853 ENCODE Processing Pipeline c07364fec46f67b8203bbf2e4d88a363 https://www.encodeproject.org/files/ENCFF950DHZ/@@download/ENCFF950DHZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF827ZIG bed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF261VSL, ENCFF361URL, ENCFF819FNM, ENCFF939YFF 243806 ENCODE Processing Pipeline aed0288e096ab1c0fd4e74913e1a3c4a https://www.encodeproject.org/files/ENCFF827ZIG/@@download/ENCFF827ZIG.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF830TXV bigBed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF827ZIG 541194 ENCODE Processing Pipeline cecf66840d6ed0c62b6ed02d5ddfaf52 https://www.encodeproject.org/files/ENCFF830TXV/@@download/ENCFF830TXV.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF237OZN bigWig signal p-value ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF261VSL, ENCFF361URL, ENCFF819FNM 687180463 ENCODE Processing Pipeline c2320ff4f3bd182982348d65d2cf63a6 https://www.encodeproject.org/files/ENCFF237OZN/@@download/ENCFF237OZN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF487GCT bigWig signal p-value ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF261VSL, ENCFF361URL, ENCFF819FNM, ENCFF939YFF 669865968 ENCODE Processing Pipeline 959f5973a2af6487c3331686f39cd720 https://www.encodeproject.org/files/ENCFF487GCT/@@download/ENCFF487GCT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF006YBK bigWig signal p-value ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF261VSL, ENCFF819FNM, ENCFF939YFF 574441503 ENCODE Processing Pipeline f1f2fd70efec033e27f006ec9152988d https://www.encodeproject.org/files/ENCFF006YBK/@@download/ENCFF006YBK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF557CWW bigWig fold change over control ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF261VSL, ENCFF361URL, ENCFF819FNM 690037954 ENCODE Processing Pipeline 7755c635598bd4215a0c152f2c07d04a https://www.encodeproject.org/files/ENCFF557CWW/@@download/ENCFF557CWW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF333XXY bigWig fold change over control ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF261VSL, ENCFF819FNM, ENCFF939YFF 617169610 ENCODE Processing Pipeline 368f9661f63ae11398938c8c8978365f https://www.encodeproject.org/files/ENCFF333XXY/@@download/ENCFF333XXY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF035WLU bigWig fold change over control ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF261VSL, ENCFF361URL, ENCFF819FNM, ENCFF939YFF 1071805701 ENCODE Processing Pipeline c2fd1f4e3ab8ad64f2cdd199307bc688 https://www.encodeproject.org/files/ENCFF035WLU/@@download/ENCFF035WLU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF964UBI bed narrowPeak replicated peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF412OOX, ENCFF827ZIG, ENCFF828ACI 196215 ENCODE Processing Pipeline 012006f37dfe2d0ee5fd93cce6a62aed https://www.encodeproject.org/files/ENCFF964UBI/@@download/ENCFF964UBI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF671DHZ bigBed narrowPeak replicated peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF964UBI 431456 ENCODE Processing Pipeline f6e5ce105738bf7fba9cd3c59b6c1f17 https://www.encodeproject.org/files/ENCFF671DHZ/@@download/ENCFF671DHZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF626HAF bam unfiltered alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002APO, ENCFF002AQB, ENCFF018NEO 3648762726 ENCODE Processing Pipeline b4957c16578db75ebe1aa88d2447df65 https://www.encodeproject.org/files/ENCFF626HAF/@@download/ENCFF626HAF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF737WKK bam unfiltered alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002APN, ENCFF002APP, ENCFF002APY, ENCFF018NEO 4243647268 ENCODE Processing Pipeline a6b01d81ee9af2102dae16d998f41d16 https://www.encodeproject.org/files/ENCFF737WKK/@@download/ENCFF737WKK.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF642ZHP bam alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002APO, ENCFF002AQB, ENCFF018NEO 1524577602 ENCODE Processing Pipeline f8b31ec4ab8cddb99ca59a37835a6206 https://www.encodeproject.org/files/ENCFF642ZHP/@@download/ENCFF642ZHP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF782MHQ bam alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002APN, ENCFF002APP, ENCFF002APY, ENCFF018NEO 1773380863 ENCODE Processing Pipeline a9ac6cdf93c37b95525d745d0ab6c783 https://www.encodeproject.org/files/ENCFF782MHQ/@@download/ENCFF782MHQ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF900EJU bed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF782MHQ 473438 ENCODE Processing Pipeline 7680e128986ed11e81dbcb0d5f88a651 https://www.encodeproject.org/files/ENCFF900EJU/@@download/ENCFF900EJU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF162NGS bed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF642ZHP 855696 ENCODE Processing Pipeline b32192539433a040d0e86558483aa2a6 https://www.encodeproject.org/files/ENCFF162NGS/@@download/ENCFF162NGS.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF307KZP bigBed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF900EJU 941249 ENCODE Processing Pipeline 58029a95444c36eb11c2f918fd0122d9 https://www.encodeproject.org/files/ENCFF307KZP/@@download/ENCFF307KZP.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF702FZA bed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF642ZHP, ENCFF782MHQ 264726 ENCODE Processing Pipeline 8a45cad9ee3fb60385cdd4ad7e612b83 https://www.encodeproject.org/files/ENCFF702FZA/@@download/ENCFF702FZA.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF906THK bigBed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF162NGS 1909214 ENCODE Processing Pipeline 25405f5e32deb6c15ac7a93256e64efd https://www.encodeproject.org/files/ENCFF906THK/@@download/ENCFF906THK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF835LHO bigBed narrowPeak peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF702FZA 585363 ENCODE Processing Pipeline c3b417c4aa4d9e7052da51ffcf336ebc https://www.encodeproject.org/files/ENCFF835LHO/@@download/ENCFF835LHO.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF087ZBN bigWig signal p-value ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF782MHQ 730781582 ENCODE Processing Pipeline 49de7169f38d46da2db81a92a5ea2840 https://www.encodeproject.org/files/ENCFF087ZBN/@@download/ENCFF087ZBN.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF393CCI bigWig signal p-value ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF642ZHP 479003995 ENCODE Processing Pipeline 387eb2e8d97b5ef75023c043b39836d3 https://www.encodeproject.org/files/ENCFF393CCI/@@download/ENCFF393CCI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF098ALU bigWig signal p-value ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF642ZHP, ENCFF782MHQ 681189539 ENCODE Processing Pipeline d83bde975cc9ba6ab06a2794faf04a41 https://www.encodeproject.org/files/ENCFF098ALU/@@download/ENCFF098ALU.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF823CFL bigWig fold change over control ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF782MHQ 731603180 ENCODE Processing Pipeline 52cb20f9c1124d10ae75581b66d2a2b2 https://www.encodeproject.org/files/ENCFF823CFL/@@download/ENCFF823CFL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF883BHE bigWig fold change over control ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF642ZHP 630801652 ENCODE Processing Pipeline 1a8dbbdf5ff0efd71f90ef9c0f86b6be https://www.encodeproject.org/files/ENCFF883BHE/@@download/ENCFF883BHE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF040LFN bigWig fold change over control ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF642ZHP, ENCFF782MHQ 1065859777 ENCODE Processing Pipeline 473917aa80693a546a978077e5de32c2 https://www.encodeproject.org/files/ENCFF040LFN/@@download/ENCFF040LFN.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF216NSI bed narrowPeak replicated peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF162NGS, ENCFF702FZA, ENCFF900EJU 193614 ENCODE Processing Pipeline bd80c5eef617336e3a9e2946a3ecd725 https://www.encodeproject.org/files/ENCFF216NSI/@@download/ENCFF216NSI.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF166MIE bigBed narrowPeak replicated peaks ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF216NSI 438038 ENCODE Processing Pipeline fecfe1f12ff324240a3df3ccd5f4bcab https://www.encodeproject.org/files/ENCFF166MIE/@@download/ENCFF166MIE.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF001KRF bam alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KRS 405994377 Bing Ren, UCSD 43550c114b540bce994e47da64a8e9c9 https://www.encodeproject.org/files/ENCFF001KRF/@@download/ENCFF001KRF.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KRG bigBed broadPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYO 1321458 Bing Ren, UCSD 55daaa9fdcdf735e42fcd0b65fd887b1 https://www.encodeproject.org/files/ENCFF001KRG/@@download/ENCFF001KRG.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KRH bam alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KRT 510702199 Bing Ren, UCSD 4d5b48f53f989c5e7df04c4d1da22a6f https://www.encodeproject.org/files/ENCFF001KRH/@@download/ENCFF001KRH.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KRI bigWig signal ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KRF, ENCFF001KRH 43640198 Bing Ren, UCSD 725d884b6491fa49fc65ef1a090cdcc7 https://www.encodeproject.org/files/ENCFF001KRI/@@download/ENCFF001KRI.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KRS fastq reads ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 448338467 Bing Ren, UCSD d8382efe7075570e5c802b12036433ef https://www.encodeproject.org/files/ENCFF001KRS/@@download/ENCFF001KRS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSH/ released low read length insufficient read depth, control insufficient read depth ENCFF001KRT fastq reads ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 565147495 Bing Ren, UCSD 6f25ecaaa9ff1e031589f435df70b29a https://www.encodeproject.org/files/ENCFF001KRT/@@download/ENCFF001KRT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSJ/ released low read length insufficient read depth, control insufficient read depth ENCFF001XYO bed broadPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KRF, ENCFF001KRH 898586 Bing Ren, UCSD e2bb28f76fcbeb431e8dc09532e20a72 https://www.encodeproject.org/files/ENCFF001XYO/@@download/ENCFF001XYO.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF390JQM bam unfiltered alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRS, ENCFF018NEO 513104639 ENCODE Processing Pipeline 9acfa6f426d62dddaccdfbe03dc1c6a5 https://www.encodeproject.org/files/ENCFF390JQM/@@download/ENCFF390JQM.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF820MBU bam unfiltered alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRT, ENCFF018NEO 631211733 ENCODE Processing Pipeline cc03e9c16b89268a4d1d09cd18f5a7ac https://www.encodeproject.org/files/ENCFF820MBU/@@download/ENCFF820MBU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF144LFW bam alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRS, ENCFF018NEO 407168970 ENCODE Processing Pipeline 3a35f666275a08b693c68604b60c2aff https://www.encodeproject.org/files/ENCFF144LFW/@@download/ENCFF144LFW.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF764AGV bam alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRT, ENCFF018NEO 505977305 ENCODE Processing Pipeline c1f1d81465f25224a0db07e479e21a2b https://www.encodeproject.org/files/ENCFF764AGV/@@download/ENCFF764AGV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF378DBP bed narrowPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF543ZOX, ENCFF764AGV 3710843 ENCODE Processing Pipeline e2c69eca6baa3cf7a5e6b558e515a7b2 https://www.encodeproject.org/files/ENCFF378DBP/@@download/ENCFF378DBP.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF711RKL bed narrowPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF144LFW, ENCFF371CWA, ENCFF543ZOX, ENCFF764AGV 3443809 ENCODE Processing Pipeline 17e6177c49088c2c7bf66f6687dc145b https://www.encodeproject.org/files/ENCFF711RKL/@@download/ENCFF711RKL.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF060QGH bigBed narrowPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF593EZE 8596594 ENCODE Processing Pipeline cf95b679ef50c05be0be9f2b2c4d9f18 https://www.encodeproject.org/files/ENCFF060QGH/@@download/ENCFF060QGH.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF593EZE bed narrowPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF144LFW, ENCFF371CWA, ENCFF543ZOX 2980090 ENCODE Processing Pipeline dc50f5523fc6d1a08c8bb922d5e8cf1f https://www.encodeproject.org/files/ENCFF593EZE/@@download/ENCFF593EZE.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF608NFA bigBed narrowPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF378DBP 10597625 ENCODE Processing Pipeline 0b2a3f8878bb9d1cac11a50270fe75e0 https://www.encodeproject.org/files/ENCFF608NFA/@@download/ENCFF608NFA.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF021LIW bigBed narrowPeak peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF711RKL 9836516 ENCODE Processing Pipeline 0679e7c64af5a13d9f192c6680fa2703 https://www.encodeproject.org/files/ENCFF021LIW/@@download/ENCFF021LIW.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF190TPP bigWig signal p-value ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF144LFW, ENCFF371CWA, ENCFF543ZOX 375761390 ENCODE Processing Pipeline 240164c630cf8f3f9b07faeb6e0ab972 https://www.encodeproject.org/files/ENCFF190TPP/@@download/ENCFF190TPP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF012WMM bigWig signal p-value ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF543ZOX, ENCFF764AGV 391663546 ENCODE Processing Pipeline d7e9adcf8127d8f818c6175c33aa232a https://www.encodeproject.org/files/ENCFF012WMM/@@download/ENCFF012WMM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF985MFD bigWig signal p-value ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF144LFW, ENCFF371CWA, ENCFF543ZOX, ENCFF764AGV 522545030 ENCODE Processing Pipeline c76378e8d61c2eb4e48cb9f0d47466ad https://www.encodeproject.org/files/ENCFF985MFD/@@download/ENCFF985MFD.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF360NKY bigWig fold change over control ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF144LFW, ENCFF371CWA, ENCFF543ZOX 251915247 ENCODE Processing Pipeline d2fd2d8846bcae7b4160b093fddfa3b6 https://www.encodeproject.org/files/ENCFF360NKY/@@download/ENCFF360NKY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF232ZEX bigWig fold change over control ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF543ZOX, ENCFF764AGV 283064110 ENCODE Processing Pipeline d921c86a60506fd5943459e43224b1ed https://www.encodeproject.org/files/ENCFF232ZEX/@@download/ENCFF232ZEX.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF733KTU bigWig fold change over control ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF144LFW, ENCFF371CWA, ENCFF543ZOX, ENCFF764AGV 429505563 ENCODE Processing Pipeline d6564118779c6e1599fac403e388555f https://www.encodeproject.org/files/ENCFF733KTU/@@download/ENCFF733KTU.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF905YWB bed narrowPeak replicated peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF378DBP, ENCFF593EZE, ENCFF711RKL 3769901 ENCODE Processing Pipeline d55ba0d90a53c0d18678f569fea9d7e1 https://www.encodeproject.org/files/ENCFF905YWB/@@download/ENCFF905YWB.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF787SFY bigBed narrowPeak replicated peaks ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF905YWB 7613101 ENCODE Processing Pipeline 0efa2a954271ded5d0936804c7e2e850 https://www.encodeproject.org/files/ENCFF787SFY/@@download/ENCFF787SFY.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF299JNL fastq reads ENCSR014GMV ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-09 ENCODE 1 1 50 single-ended 1397468210 Richard Myers, HAIB 8407312291d9cccd103bf6aacd514e31 SRA:SRR5112436 https://www.encodeproject.org/files/ENCFF299JNL/@@download/ENCFF299JNL.fastq.gz Illumina HiSeq 2500 released insufficient read depth for broad peaks control ENCFF280ERM bam unfiltered alignments ENCSR014GMV ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-09 ENCODE 1 ENCFF018NEO, ENCFF299JNL 1547388740 ENCODE Processing Pipeline 74381b2edb8e152f223623532268e8c7 https://www.encodeproject.org/files/ENCFF280ERM/@@download/ENCFF280ERM.bam mm10 released insufficient read depth for broad peaks control ENCFF431RNJ bam alignments ENCSR014GMV ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-09 ENCODE 1 50 ENCFF018NEO, ENCFF299JNL 1135888339 ENCODE Processing Pipeline 4a09cfd6d6ad06a67bc386330af9266c https://www.encodeproject.org/files/ENCFF431RNJ/@@download/ENCFF431RNJ.bam mm10 released insufficient read depth for broad peaks control ENCFF002APE fastq reads ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1481984841 Bing Ren, UCSD 5b1af37e6a2f783733ca3e4ee61173fe SRA:SRR3651257 https://www.encodeproject.org/files/ENCFF002APE/@@download/ENCFF002APE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARI/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, mixed read lengths ENCFF002APG fastq reads ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1806413722 Bing Ren, UCSD 3634a5d229f2c4c0be02db3375f2c864 SRA:SRR3651258 https://www.encodeproject.org/files/ENCFF002APG/@@download/ENCFF002APG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARL/ released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF290SMX bam alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APG, ENCFF806TVZ 1380677075 ENCODE Processing Pipeline 3e70d2791d8a85e2fba1bb31e3f6cf21 https://www.encodeproject.org/files/ENCFF290SMX/@@download/ENCFF290SMX.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF791FTM bam alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APE, ENCFF806TVZ 1337085803 ENCODE Processing Pipeline 6255545a3d3704cb6e85d259cb83a354 https://www.encodeproject.org/files/ENCFF791FTM/@@download/ENCFF791FTM.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF400TSH bed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF290SMX, ENCFF791FTM, ENCFF946XCS 657026 ENCODE Processing Pipeline b5721aa98ea66bc40b39ed5166aec967 https://www.encodeproject.org/files/ENCFF400TSH/@@download/ENCFF400TSH.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF409PBW bed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF791FTM, ENCFF946XCS 809281 ENCODE Processing Pipeline 49e7e64e981e2e2197dc1ae069419342 https://www.encodeproject.org/files/ENCFF409PBW/@@download/ENCFF409PBW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF245EEY bigBed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF456MGF 2711802 ENCODE Processing Pipeline a92ec341b97fbbd008e102e6bec6539f https://www.encodeproject.org/files/ENCFF245EEY/@@download/ENCFF245EEY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF062WFT bigBed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF409PBW 1991313 ENCODE Processing Pipeline d05d4e4572340b0b1c7f50646b586b8b https://www.encodeproject.org/files/ENCFF062WFT/@@download/ENCFF062WFT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF456MGF bed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF290SMX, ENCFF946XCS 1146213 ENCODE Processing Pipeline 905275d69fa9254dc9b58ce85003e5e0 https://www.encodeproject.org/files/ENCFF456MGF/@@download/ENCFF456MGF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF142UOA bigBed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF400TSH 1633929 ENCODE Processing Pipeline 53a58d077c00401dda59bc032d9c3356 https://www.encodeproject.org/files/ENCFF142UOA/@@download/ENCFF142UOA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF219KEO bigWig signal p-value ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF791FTM, ENCFF946XCS 463602900 ENCODE Processing Pipeline 5dd49ac53bb5b2896dc94fc7f7c42459 https://www.encodeproject.org/files/ENCFF219KEO/@@download/ENCFF219KEO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF847VFL bigWig signal p-value ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF290SMX, ENCFF946XCS 462144694 ENCODE Processing Pipeline 98e4c7f7a201de421c65b2a9de2b82f7 https://www.encodeproject.org/files/ENCFF847VFL/@@download/ENCFF847VFL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF712XFZ bigWig fold change over control ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF791FTM, ENCFF946XCS 453911251 ENCODE Processing Pipeline 6d294c77c6093bf7e6983d0060d79d69 https://www.encodeproject.org/files/ENCFF712XFZ/@@download/ENCFF712XFZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF234PKT bigWig signal p-value ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF290SMX, ENCFF791FTM, ENCFF946XCS 600000806 ENCODE Processing Pipeline 39c6185566f413e954d2110952c60931 https://www.encodeproject.org/files/ENCFF234PKT/@@download/ENCFF234PKT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF530BGH bigWig fold change over control ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF290SMX, ENCFF946XCS 568530531 ENCODE Processing Pipeline 502a27f43f26cf84ef5ba010b16af214 https://www.encodeproject.org/files/ENCFF530BGH/@@download/ENCFF530BGH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF519FMW bigWig fold change over control ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF290SMX, ENCFF791FTM, ENCFF946XCS 816272258 ENCODE Processing Pipeline 6a4815d8e259fb959daf4818e00bc066 https://www.encodeproject.org/files/ENCFF519FMW/@@download/ENCFF519FMW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF080MUG bed narrowPeak replicated peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF400TSH, ENCFF409PBW, ENCFF456MGF 655216 ENCODE Processing Pipeline 46278c0e3a86731532a5449451af0721 https://www.encodeproject.org/files/ENCFF080MUG/@@download/ENCFF080MUG.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF452GAT bigBed narrowPeak replicated peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080MUG 1409179 ENCODE Processing Pipeline bd2a1f09c923b63f4893e0a4ad897648 https://www.encodeproject.org/files/ENCFF452GAT/@@download/ENCFF452GAT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF112CTZ bam unfiltered alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APE, ENCFF018NEO 1508046389 ENCODE Processing Pipeline f11ca09716ab019051d27d54f1e748b9 https://www.encodeproject.org/files/ENCFF112CTZ/@@download/ENCFF112CTZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF597MXC bam unfiltered alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APG, ENCFF018NEO 2048046957 ENCODE Processing Pipeline 1aad34bafd091a990860a08fbe15bc12 https://www.encodeproject.org/files/ENCFF597MXC/@@download/ENCFF597MXC.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF482CUI bam alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APE, ENCFF018NEO 996783779 ENCODE Processing Pipeline 1e2830b6b63a36b4ae4becaa3183e3bd https://www.encodeproject.org/files/ENCFF482CUI/@@download/ENCFF482CUI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF881HDU bam alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APG, ENCFF018NEO 1380319885 ENCODE Processing Pipeline b37599889374969528780526b46e5a6f https://www.encodeproject.org/files/ENCFF881HDU/@@download/ENCFF881HDU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF203VNI bed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482CUI, ENCFF482UTL 1187627 ENCODE Processing Pipeline 8d901f87251dcb8e846511bee8373385 https://www.encodeproject.org/files/ENCFF203VNI/@@download/ENCFF203VNI.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF813WBG bed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF482UTL, ENCFF881HDU 468280 ENCODE Processing Pipeline b442b523dadf02218b6c59fcc0c8caed https://www.encodeproject.org/files/ENCFF813WBG/@@download/ENCFF813WBG.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF345SRS bed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF292SSW, ENCFF482CUI, ENCFF482UTL, ENCFF881HDU 652403 ENCODE Processing Pipeline b043940b34d02bc74a16df14d85a5e97 https://www.encodeproject.org/files/ENCFF345SRS/@@download/ENCFF345SRS.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF170JGY bigBed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF203VNI 2782297 ENCODE Processing Pipeline 5bbd3fc5295c70bdb7a4f9a455432db5 https://www.encodeproject.org/files/ENCFF170JGY/@@download/ENCFF170JGY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF402WDF bigBed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF813WBG 1236450 ENCODE Processing Pipeline c22d4e5019ff1a59d4b190126e8ad462 https://www.encodeproject.org/files/ENCFF402WDF/@@download/ENCFF402WDF.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF832QHV bigBed narrowPeak peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF345SRS 1626324 ENCODE Processing Pipeline 0c85c5af550dc64f55292d15f9e00411 https://www.encodeproject.org/files/ENCFF832QHV/@@download/ENCFF832QHV.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF491NPP bigWig signal p-value ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482CUI, ENCFF482UTL 409492458 ENCODE Processing Pipeline de467da12a4b60cdefe3fcda5efcfb3f https://www.encodeproject.org/files/ENCFF491NPP/@@download/ENCFF491NPP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF711OAM bigWig signal p-value ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF482UTL, ENCFF881HDU 318305629 ENCODE Processing Pipeline 6c448b4e08b0afa9d14ef76a085f5d2d https://www.encodeproject.org/files/ENCFF711OAM/@@download/ENCFF711OAM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF436YEQ bigWig signal p-value ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF292SSW, ENCFF482CUI, ENCFF482UTL, ENCFF881HDU 595533175 ENCODE Processing Pipeline 7997b6ae1e5e3894bb79489bcf6de9ac https://www.encodeproject.org/files/ENCFF436YEQ/@@download/ENCFF436YEQ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF217WLF bigWig fold change over control ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482CUI, ENCFF482UTL 435870281 ENCODE Processing Pipeline 7302420fa89b8581a8b964a5dbc93491 https://www.encodeproject.org/files/ENCFF217WLF/@@download/ENCFF217WLF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF767FOO bigWig fold change over control ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF482UTL, ENCFF881HDU 459715473 ENCODE Processing Pipeline 969b7e87e444f05a56b569a0eb464df5 https://www.encodeproject.org/files/ENCFF767FOO/@@download/ENCFF767FOO.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF563JNZ bigWig fold change over control ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF292SSW, ENCFF482CUI, ENCFF482UTL, ENCFF881HDU 801364738 ENCODE Processing Pipeline 1068bbf69ea656db421d4ba156b1fa4d https://www.encodeproject.org/files/ENCFF563JNZ/@@download/ENCFF563JNZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF804RLZ bed narrowPeak replicated peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF203VNI, ENCFF345SRS, ENCFF813WBG 612242 ENCODE Processing Pipeline 2fefc32beb84d2058d716e447831f656 https://www.encodeproject.org/files/ENCFF804RLZ/@@download/ENCFF804RLZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF046ESP bigBed narrowPeak replicated peaks ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF804RLZ 1333702 ENCODE Processing Pipeline 327a607aecceef4d0719cf81480e7800 https://www.encodeproject.org/files/ENCFF046ESP/@@download/ENCFF046ESP.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF475REW fastq reads ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2570253242 Bing Ren, UCSD 172d5d141f7c6fa6879b565e0387207e SRA:SRR4235681 https://www.encodeproject.org/files/ENCFF475REW/@@download/ENCFF475REW.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released mild to moderate bottlenecking, moderate library complexity ENCFF773FQJ fastq reads ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 3179741748 Bing Ren, UCSD 62169d1711ae9228ec1158b0e91ba937 SRA:SRR4235682 https://www.encodeproject.org/files/ENCFF773FQJ/@@download/ENCFF773FQJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF024PVD/ released mild to moderate bottlenecking, moderate library complexity ENCFF438UXW bam unfiltered alignments ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF475REW 3179227177 ENCODE Processing Pipeline 9bf0a85ea2f3c3c4bb0f09f84bd80c11 https://www.encodeproject.org/files/ENCFF438UXW/@@download/ENCFF438UXW.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF418JUO bam unfiltered alignments ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF773FQJ 3901200277 ENCODE Processing Pipeline 4d04957bcaa1a6e5c9016aaea5b95adf https://www.encodeproject.org/files/ENCFF418JUO/@@download/ENCFF418JUO.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF799PON bam alignments ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF475REW 2034236817 ENCODE Processing Pipeline 27729ba4b5ac1af39e3e2ff906d2df7c https://www.encodeproject.org/files/ENCFF799PON/@@download/ENCFF799PON.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF911LOT bam alignments ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF773FQJ 2657115247 ENCODE Processing Pipeline e8e5be97c00f93bee15928281fc04409 https://www.encodeproject.org/files/ENCFF911LOT/@@download/ENCFF911LOT.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF927PFM bed narrowPeak peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF869IME, ENCFF911LOT, ENCFF940GMW 4334881 ENCODE Processing Pipeline 635666712deec4008dcc3f3f6eb0aa65 https://www.encodeproject.org/files/ENCFF927PFM/@@download/ENCFF927PFM.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF113NKD bigBed narrowPeak peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF149HEP 5270511 ENCODE Processing Pipeline ca8be4e00fc5e0f1d9d2f5a703045333 https://www.encodeproject.org/files/ENCFF113NKD/@@download/ENCFF113NKD.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF695DFF bigWig signal p-value ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF869IME, ENCFF911LOT, ENCFF940GMW 1077348163 ENCODE Processing Pipeline a66e069903d68888d18ac1c8050b6451 https://www.encodeproject.org/files/ENCFF695DFF/@@download/ENCFF695DFF.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF747YTU bed narrowPeak peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF799PON, ENCFF869IME, ENCFF911LOT, ENCFF940GMW 4073200 ENCODE Processing Pipeline 7004f318d677e1034933116a6e43fb08 https://www.encodeproject.org/files/ENCFF747YTU/@@download/ENCFF747YTU.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF149HEP bed narrowPeak peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF799PON, ENCFF869IME 2492627 ENCODE Processing Pipeline de1870c7f39975c1e8721de18898ef4d https://www.encodeproject.org/files/ENCFF149HEP/@@download/ENCFF149HEP.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF587XKE bigBed narrowPeak peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF927PFM 9021268 ENCODE Processing Pipeline 87ac4a211a5fa10a1225388ece027827 https://www.encodeproject.org/files/ENCFF587XKE/@@download/ENCFF587XKE.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF606UDI bigBed narrowPeak peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF747YTU 8366891 ENCODE Processing Pipeline 4cd5799c72578ac961d657941e6ff496 https://www.encodeproject.org/files/ENCFF606UDI/@@download/ENCFF606UDI.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF724END bigWig signal p-value ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF799PON, ENCFF869IME 656741501 ENCODE Processing Pipeline 20abe69ccb2b6b3bf646e834018b1e14 https://www.encodeproject.org/files/ENCFF724END/@@download/ENCFF724END.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF162KTD bigWig fold change over control ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF869IME, ENCFF911LOT, ENCFF940GMW 1152464054 ENCODE Processing Pipeline e52e672301d97298602798ac2ee379b2 https://www.encodeproject.org/files/ENCFF162KTD/@@download/ENCFF162KTD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF849IIY bigWig signal p-value ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF799PON, ENCFF869IME, ENCFF911LOT, ENCFF940GMW 1491800627 ENCODE Processing Pipeline 3f30dcdf0b2b730436a5f6944cc5a998 https://www.encodeproject.org/files/ENCFF849IIY/@@download/ENCFF849IIY.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF623AYG bigWig fold change over control ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF799PON, ENCFF869IME 799285783 ENCODE Processing Pipeline 9046410ad7f5e99dd67475d579430d3b https://www.encodeproject.org/files/ENCFF623AYG/@@download/ENCFF623AYG.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF644DVO bigWig fold change over control ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF799PON, ENCFF869IME, ENCFF911LOT, ENCFF940GMW 1506964362 ENCODE Processing Pipeline f0d5f85d7d0770f9fe98083f64ad37a6 https://www.encodeproject.org/files/ENCFF644DVO/@@download/ENCFF644DVO.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF565QAD bed narrowPeak replicated peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF149HEP, ENCFF747YTU, ENCFF927PFM 3274722 ENCODE Processing Pipeline 4f839ec9b008724a9ddb50d9f1720c05 https://www.encodeproject.org/files/ENCFF565QAD/@@download/ENCFF565QAD.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF289QTC bigBed narrowPeak replicated peaks ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF565QAD 5425572 ENCODE Processing Pipeline 56f727ad9f693f680470b96767511a71 https://www.encodeproject.org/files/ENCFF289QTC/@@download/ENCFF289QTC.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF001MBL bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MBR 506365884 Ross Hardison, PennState c53f036214d50e340af849794f53587e https://www.encodeproject.org/files/ENCFF001MBL/@@download/ENCFF001MBL.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBM bigBed broadPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDG 3364388 Ross Hardison, PennState 0ba1393375d973d25a5cd1dc3a4f8fb3 https://www.encodeproject.org/files/ENCFF001MBM/@@download/ENCFF001MBM.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBN bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MBW 5374431985 Ross Hardison, PennState 88f143501e67f47dc776e46fd53ed5a9 https://www.encodeproject.org/files/ENCFF001MBN/@@download/ENCFF001MBN.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBO bigBed broadPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDH 945065 Ross Hardison, PennState 4c0d984ae6b4af9dcf7f53690a644629 https://www.encodeproject.org/files/ENCFF001MBO/@@download/ENCFF001MBO.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBP bigBed broadPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDI 4008775 Ross Hardison, PennState bdb5be0e19b79cc8caba034fd399483e https://www.encodeproject.org/files/ENCFF001MBP/@@download/ENCFF001MBP.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBQ bigWig signal ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1055302359 Ross Hardison, PennState 4af5be583fc4f63c8feed71cbcd9ea2a https://www.encodeproject.org/files/ENCFF001MBQ/@@download/ENCFF001MBQ.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MBR fastq reads ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 36 single-ended 447852228 Ross Hardison, PennState e2fe5a6573836ff0243dfae0721a280c https://www.encodeproject.org/files/ENCFF001MBR/@@download/ENCFF001MBR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001MBS bigWig signal ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5903924231 Ross Hardison, PennState 6bda07c1912ee0845fc2fb89d2a73fc0 https://www.encodeproject.org/files/ENCFF001MBS/@@download/ENCFF001MBS.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MBT bigWig signal ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 5947486512 Ross Hardison, PennState 6b42bda7854a6f73b1a3a4a61c21d0f3 https://www.encodeproject.org/files/ENCFF001MBT/@@download/ENCFF001MBT.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MBW fastq reads ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4805375909 Ross Hardison, PennState 633165468d298416ba03a5bba35d5269 https://www.encodeproject.org/files/ENCFF001MBW/@@download/ENCFF001MBW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSW/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF001YDG bed broadPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1196911 Ross Hardison, PennState b28eb096ef613d0382b60188e5108b05 https://www.encodeproject.org/files/ENCFF001YDG/@@download/ENCFF001YDG.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDH bed broadPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 377368 Ross Hardison, PennState 2ab36591bb60e686d1e0b02ddd0a5022 https://www.encodeproject.org/files/ENCFF001YDH/@@download/ENCFF001YDH.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YDI bed broadPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1374788 Ross Hardison, PennState ff5f98ecdde915c491d9195eae9049a1 https://www.encodeproject.org/files/ENCFF001YDI/@@download/ENCFF001YDI.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF627LQZ bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MBW, ENCFF806TVZ 3840902002 ENCODE Processing Pipeline 4dc02b87d443f0f59fb78548de5d0e47 https://www.encodeproject.org/files/ENCFF627LQZ/@@download/ENCFF627LQZ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF178OUE bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MBR, ENCFF806TVZ 360419271 ENCODE Processing Pipeline dc10fab995d249213f5274ff7aa662c3 https://www.encodeproject.org/files/ENCFF178OUE/@@download/ENCFF178OUE.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF254JHP bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MBR, ENCFF018NEO 360484549 ENCODE Processing Pipeline 2aca636820afb01286b3466a3f7059e2 https://www.encodeproject.org/files/ENCFF254JHP/@@download/ENCFF254JHP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF805RTF bam unfiltered alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MBW, ENCFF018NEO 4294053285 ENCODE Processing Pipeline 6dbbd3c08179ca3ab7cc9277bfedf59d https://www.encodeproject.org/files/ENCFF805RTF/@@download/ENCFF805RTF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF164MEF bam unfiltered alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MBR, ENCFF018NEO 526951479 ENCODE Processing Pipeline 0f7081a25c53d1537be9e51688722f0a https://www.encodeproject.org/files/ENCFF164MEF/@@download/ENCFF164MEF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF211VNX bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MBW, ENCFF018NEO 2844300217 ENCODE Processing Pipeline c421be743020df1a2d2f3788af1988d4 https://www.encodeproject.org/files/ENCFF211VNX/@@download/ENCFF211VNX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF027UZH bigBed narrowPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF072HQN 6942767 ENCODE Processing Pipeline 030b60ae8c99ded8076bde2162c8e310 https://www.encodeproject.org/files/ENCFF027UZH/@@download/ENCFF027UZH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF252MFJ bed narrowPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF254JHP, ENCFF383IWZ, ENCFF676LVI 922692 ENCODE Processing Pipeline 8492287afe582312a1cc7980598ff95b https://www.encodeproject.org/files/ENCFF252MFJ/@@download/ENCFF252MFJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF476BCZ bigWig signal p-value ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF254JHP, ENCFF383IWZ, ENCFF676LVI 720158323 ENCODE Processing Pipeline fd39393b03be8422ba28b193fb324930 https://www.encodeproject.org/files/ENCFF476BCZ/@@download/ENCFF476BCZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF607MAY bed narrowPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF211VNX, ENCFF383IWZ, ENCFF676LVI 3490287 ENCODE Processing Pipeline 0f2ffb1c0e74ec7acdb7e5e893c74ef3 https://www.encodeproject.org/files/ENCFF607MAY/@@download/ENCFF607MAY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF072HQN bed narrowPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF211VNX, ENCFF254JHP, ENCFF383IWZ, ENCFF676LVI 2878059 ENCODE Processing Pipeline 2e8b06f84a3f3cb65def33fead77c77f https://www.encodeproject.org/files/ENCFF072HQN/@@download/ENCFF072HQN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF514XWH bigBed narrowPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF607MAY 8622467 ENCODE Processing Pipeline 3efea76590398549226f6284a9bfb8c9 https://www.encodeproject.org/files/ENCFF514XWH/@@download/ENCFF514XWH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF810MLA bigBed narrowPeak peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF252MFJ 2467094 ENCODE Processing Pipeline 45145422af079c6b0a198e1b6757cccd https://www.encodeproject.org/files/ENCFF810MLA/@@download/ENCFF810MLA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF127QIP bigWig signal p-value ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF211VNX, ENCFF383IWZ, ENCFF676LVI 1380072007 ENCODE Processing Pipeline 683e2d573ed9393c6335fadd295fc60b https://www.encodeproject.org/files/ENCFF127QIP/@@download/ENCFF127QIP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF082IFN bigWig signal p-value ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF211VNX, ENCFF254JHP, ENCFF383IWZ, ENCFF676LVI 1630937089 ENCODE Processing Pipeline bd7823a4a24b0417e42c45611a7ef1a7 https://www.encodeproject.org/files/ENCFF082IFN/@@download/ENCFF082IFN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF215NPU bigWig fold change over control ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF254JHP, ENCFF383IWZ, ENCFF676LVI 186787132 ENCODE Processing Pipeline 89f0aefd69478f2c06399b786aafd5e8 https://www.encodeproject.org/files/ENCFF215NPU/@@download/ENCFF215NPU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF526UQK bigWig fold change over control ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF211VNX, ENCFF383IWZ, ENCFF676LVI 1521052866 ENCODE Processing Pipeline ca477a5d1ca722ad9f3a85284ee1f04d https://www.encodeproject.org/files/ENCFF526UQK/@@download/ENCFF526UQK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF299BAW bigWig fold change over control ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF211VNX, ENCFF254JHP, ENCFF383IWZ, ENCFF676LVI 1566101777 ENCODE Processing Pipeline e5c8cfcc37a2893db98b029f71b14f37 https://www.encodeproject.org/files/ENCFF299BAW/@@download/ENCFF299BAW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF698ERY bed narrowPeak replicated peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF072HQN, ENCFF252MFJ, ENCFF607MAY 1145538 ENCODE Processing Pipeline 68d1facf1f64eeaeb84d9dd53870da72 https://www.encodeproject.org/files/ENCFF698ERY/@@download/ENCFF698ERY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF536KWR bigBed narrowPeak replicated peaks ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF698ERY 2263005 ENCODE Processing Pipeline e2f4f77467e41e44b5014d566367dcb6 https://www.encodeproject.org/files/ENCFF536KWR/@@download/ENCFF536KWR.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF002ESX fastq reads ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 401413179 Bing Ren, UCSD 0b0eb23b208c0652b953eed9e91bac72 SRA:SRR3653240 https://www.encodeproject.org/files/ENCFF002ESX/@@download/ENCFF002ESX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYB/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ETC fastq reads ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1147599113 Bing Ren, UCSD c7e106b5aa0d8ae947f8229ae4bbb43a SRA:SRR3653239 https://www.encodeproject.org/files/ENCFF002ETC/@@download/ENCFF002ETC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYC/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF842NLM bam alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETC, ENCFF806TVZ 1032196335 ENCODE Processing Pipeline cbe7d0fa1967509ef5f9a9674ad023b5 https://www.encodeproject.org/files/ENCFF842NLM/@@download/ENCFF842NLM.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF865KDT fastq reads ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 1480380225 Bing Ren, UCSD 2504d48fb87a729884f37164ad31957f SRA:SRR3653241 https://www.encodeproject.org/files/ENCFF865KDT/@@download/ENCFF865KDT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYB/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF305WUF bam alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESX, ENCFF806TVZ, ENCFF865KDT 1674562832 ENCODE Processing Pipeline 3da950b008ac2bc05d837f68324799ab https://www.encodeproject.org/files/ENCFF305WUF/@@download/ENCFF305WUF.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF060XDE bigBed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF231OQI 4910511 ENCODE Processing Pipeline a18037aa76cda91df3e606d1691f790b https://www.encodeproject.org/files/ENCFF060XDE/@@download/ENCFF060XDE.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF364TPW bigBed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF949JAK 6618337 ENCODE Processing Pipeline 5f8ab8f965ffceb736c9c28ac3a1597f https://www.encodeproject.org/files/ENCFF364TPW/@@download/ENCFF364TPW.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF845RSR bed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF305WUF, ENCFF783YRC 2356046 ENCODE Processing Pipeline 7cf922cfadd8740a0db0ff18fd33322e https://www.encodeproject.org/files/ENCFF845RSR/@@download/ENCFF845RSR.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF231OQI bed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF842NLM 2167092 ENCODE Processing Pipeline 721f83c35e1ce938dc8545157d23cb77 https://www.encodeproject.org/files/ENCFF231OQI/@@download/ENCFF231OQI.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF949JAK bed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF305WUF, ENCFF783YRC, ENCFF842NLM 2354379 ENCODE Processing Pipeline fd74668665c0f08e709dbc791607c942 https://www.encodeproject.org/files/ENCFF949JAK/@@download/ENCFF949JAK.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF459ABF bigBed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF845RSR 6754381 ENCODE Processing Pipeline 5df20b12689dbc11d69ae2a6888b0f17 https://www.encodeproject.org/files/ENCFF459ABF/@@download/ENCFF459ABF.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF373DQZ bigWig signal p-value ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF305WUF, ENCFF783YRC 784245856 ENCODE Processing Pipeline f210cd438aeca24851ee77652b019138 https://www.encodeproject.org/files/ENCFF373DQZ/@@download/ENCFF373DQZ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF200DHZ bigWig signal p-value ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF842NLM 381788715 ENCODE Processing Pipeline 78744fc10c4604ac1d9c8f110fb59532 https://www.encodeproject.org/files/ENCFF200DHZ/@@download/ENCFF200DHZ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF827GIS bigWig signal p-value ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF305WUF, ENCFF783YRC, ENCFF842NLM 926136653 ENCODE Processing Pipeline 53124b3ca8cd0639d4355c4e40a38e21 https://www.encodeproject.org/files/ENCFF827GIS/@@download/ENCFF827GIS.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF224KVE bigWig fold change over control ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF141POR, ENCFF305WUF, ENCFF783YRC, ENCFF842NLM 1029126292 ENCODE Processing Pipeline 205a2a84079bf67da21d8126cfdf03c7 https://www.encodeproject.org/files/ENCFF224KVE/@@download/ENCFF224KVE.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF100VGX bigWig fold change over control ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF842NLM 454378873 ENCODE Processing Pipeline ea29c3ddea3547436ba174611cd4b649 https://www.encodeproject.org/files/ENCFF100VGX/@@download/ENCFF100VGX.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF186YJT bigWig fold change over control ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF305WUF, ENCFF783YRC 745017037 ENCODE Processing Pipeline 486fab7b08e69f5226eec88005189e03 https://www.encodeproject.org/files/ENCFF186YJT/@@download/ENCFF186YJT.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF689YUD bigBed narrowPeak replicated peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF493CKG 4300424 ENCODE Processing Pipeline c4a8738f8b54ba6fc8d1e7b65238df27 https://www.encodeproject.org/files/ENCFF689YUD/@@download/ENCFF689YUD.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF493CKG bed narrowPeak replicated peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF231OQI, ENCFF845RSR, ENCFF949JAK 1911141 ENCODE Processing Pipeline 693c271df5c0f4ace427aed056934e66 https://www.encodeproject.org/files/ENCFF493CKG/@@download/ENCFF493CKG.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF813DCB bam unfiltered alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETC, ENCFF018NEO 1470295815 ENCODE Processing Pipeline e5395cd653ab06e00cb0016402ae17b8 https://www.encodeproject.org/files/ENCFF813DCB/@@download/ENCFF813DCB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF835AHO bam unfiltered alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESX, ENCFF018NEO, ENCFF865KDT 2020473881 ENCODE Processing Pipeline 4873cbe564c930676f4e5cd423e5d9cb https://www.encodeproject.org/files/ENCFF835AHO/@@download/ENCFF835AHO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF298UEM bam alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETC, ENCFF018NEO 1031951976 ENCODE Processing Pipeline f14e2ac18ef62654d8e4b56611bb922f https://www.encodeproject.org/files/ENCFF298UEM/@@download/ENCFF298UEM.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF929HGZ bam alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESX, ENCFF018NEO, ENCFF865KDT 1360545174 ENCODE Processing Pipeline 99b20431f4c06cc3441afcbaccebaede https://www.encodeproject.org/files/ENCFF929HGZ/@@download/ENCFF929HGZ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF277GYA bed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF298UEM 2115959 ENCODE Processing Pipeline be0bf6bfadc95c7f5588e7f1eee94315 https://www.encodeproject.org/files/ENCFF277GYA/@@download/ENCFF277GYA.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF595LQP bed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF929HGZ 2490192 ENCODE Processing Pipeline 69ccc0e479aca2489ddb04e585763498 https://www.encodeproject.org/files/ENCFF595LQP/@@download/ENCFF595LQP.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF139CFC bed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF298UEM, ENCFF658UBJ, ENCFF929HGZ 2633436 ENCODE Processing Pipeline 25b2305fc45e17fadcf998d92a848edd https://www.encodeproject.org/files/ENCFF139CFC/@@download/ENCFF139CFC.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF774MPK bigBed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF595LQP 7065071 ENCODE Processing Pipeline 56fbdbd1efdc22019ac6db600bb05d62 https://www.encodeproject.org/files/ENCFF774MPK/@@download/ENCFF774MPK.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF796MPO bigBed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF277GYA 4786808 ENCODE Processing Pipeline 0461479a380cbfe7adc2b4b4451600b5 https://www.encodeproject.org/files/ENCFF796MPO/@@download/ENCFF796MPO.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF987FYJ bigBed narrowPeak peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF139CFC 7336406 ENCODE Processing Pipeline 115718e41bd3c12acbd34d75f93067c2 https://www.encodeproject.org/files/ENCFF987FYJ/@@download/ENCFF987FYJ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF685VKC bigWig signal p-value ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF929HGZ 650098445 ENCODE Processing Pipeline 0377f7c5c07813a025aa0c7dde7cdd7c https://www.encodeproject.org/files/ENCFF685VKC/@@download/ENCFF685VKC.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF171COW bigWig signal p-value ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF298UEM 426882225 ENCODE Processing Pipeline ee703ba320a91818068039430d48439d https://www.encodeproject.org/files/ENCFF171COW/@@download/ENCFF171COW.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF236PNN bigWig signal p-value ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF298UEM, ENCFF658UBJ, ENCFF929HGZ 927481116 ENCODE Processing Pipeline ef0c4a7db8f9857d87c2d8f6f3d257be https://www.encodeproject.org/files/ENCFF236PNN/@@download/ENCFF236PNN.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF066CHX bigWig fold change over control ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF929HGZ 734701043 ENCODE Processing Pipeline 972d6ae853c9f410cdec3756442660cf https://www.encodeproject.org/files/ENCFF066CHX/@@download/ENCFF066CHX.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF767KEL bigWig fold change over control ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF298UEM 459687195 ENCODE Processing Pipeline 13432511e1dab8fc56e4c96596fc5549 https://www.encodeproject.org/files/ENCFF767KEL/@@download/ENCFF767KEL.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF043PGB bigWig fold change over control ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF298UEM, ENCFF658UBJ, ENCFF929HGZ 983622826 ENCODE Processing Pipeline 1132f3fdead210537178111c8b755203 https://www.encodeproject.org/files/ENCFF043PGB/@@download/ENCFF043PGB.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF814BNR bed narrowPeak replicated peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF139CFC, ENCFF277GYA, ENCFF595LQP 1939630 ENCODE Processing Pipeline b36b7b6d0648eb1bdc99f083d7659324 https://www.encodeproject.org/files/ENCFF814BNR/@@download/ENCFF814BNR.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF235DUM bigBed narrowPeak replicated peaks ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF814BNR 4345459 ENCODE Processing Pipeline 9e1b863208ca268793e91c5722e1322b https://www.encodeproject.org/files/ENCFF235DUM/@@download/ENCFF235DUM.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF929WDB fastq reads ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2651193989 Bing Ren, UCSD 55f3eb33605ae9a921d15cab3526d73d SRA:SRR4235703 https://www.encodeproject.org/files/ENCFF929WDB/@@download/ENCFF929WDB.fastq.gz Illumina HiSeq 4000 released ENCFF183PVA fastq reads ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2701900624 Bing Ren, UCSD 9f6fd765cbe699d0d6900000e7a16ec9 SRA:SRR4235704 https://www.encodeproject.org/files/ENCFF183PVA/@@download/ENCFF183PVA.fastq.gz Illumina HiSeq 4000 released ENCFF725DVQ bam unfiltered alignments ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF929WDB 3619549728 ENCODE Processing Pipeline d13bb6176e87603574a59e2b5a3ef130 https://www.encodeproject.org/files/ENCFF725DVQ/@@download/ENCFF725DVQ.bam mm10 released ENCFF961OGK bam unfiltered alignments ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF183PVA 3687566982 ENCODE Processing Pipeline ec97cc2e8186bba9f8d2d39ad4834fc4 https://www.encodeproject.org/files/ENCFF961OGK/@@download/ENCFF961OGK.bam mm10 released ENCFF128QRQ bam alignments ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF183PVA 2707333828 ENCODE Processing Pipeline 65c8004a9aeb140d023ead687337a620 https://www.encodeproject.org/files/ENCFF128QRQ/@@download/ENCFF128QRQ.bam mm10 released ENCFF887RXR bam alignments ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF929WDB 2663902464 ENCODE Processing Pipeline 63277868f26b80e010599f5af191e16d https://www.encodeproject.org/files/ENCFF887RXR/@@download/ENCFF887RXR.bam mm10 released ENCFF001IAI bigBed narrowPeak peaks ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUN 192672 Barbara Wold, Caltech fdc605901db162911f59ee31c14a8028 https://www.encodeproject.org/files/ENCFF001IAI/@@download/ENCFF001IAI.bigBed mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAJ fastq reads ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 198205554 Barbara Wold, Caltech a8040d0a9292145d9cb03113bea1dd79 https://www.encodeproject.org/files/ENCFF001IAJ/@@download/ENCFF001IAJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAK fastq reads ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 350435043 Barbara Wold, Caltech ae374ed4807d518532424bb3a6038b8c https://www.encodeproject.org/files/ENCFF001IAK/@@download/ENCFF001IAK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAL fastq reads ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 323505771 Barbara Wold, Caltech 37aff8fd9bc947e7af6c5b3b837d70ae https://www.encodeproject.org/files/ENCFF001IAL/@@download/ENCFF001IAL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAM bigWig signal ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAN 173640310 Barbara Wold, Caltech 653223b483b616f535280c02177debee https://www.encodeproject.org/files/ENCFF001IAM/@@download/ENCFF001IAM.bigWig mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IAN bam alignments ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IAJ, ENCFF001IAK, ENCFF001IAL 1076510908 Barbara Wold, Caltech 62ba5579213e7facba61e88c6721c76d https://www.encodeproject.org/files/ENCFF001IAN/@@download/ENCFF001IAN.bam mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001XUN bed narrowPeak peaks ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAN 67911 Barbara Wold, Caltech c6f8a8f39764ca306ca46c3912678e72 https://www.encodeproject.org/files/ENCFF001XUN/@@download/ENCFF001XUN.bed.gz mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF093NUK bam unfiltered alignments ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001IAJ, ENCFF001IAK, ENCFF001IAL, ENCFF018NEO 1179685092 ENCODE Processing Pipeline 0d7e599e9e7dc02070f5c32fd6149359 https://www.encodeproject.org/files/ENCFF093NUK/@@download/ENCFF093NUK.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF647SBM bam alignments ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001IAJ, ENCFF001IAK, ENCFF001IAL, ENCFF018NEO 677484590 ENCODE Processing Pipeline d7464487f08dc1e55693bd604ed1c9b7 https://www.encodeproject.org/files/ENCFF647SBM/@@download/ENCFF647SBM.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF287RGE bigBed narrowPeak peaks ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF044YOI 4182815 ENCODE Processing Pipeline e993ccfc2ea02bf047b1c4881447e8e1 https://www.encodeproject.org/files/ENCFF287RGE/@@download/ENCFF287RGE.bigBed mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF224LIF bigWig signal p-value ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF258NUS, ENCFF647SBM 372097898 ENCODE Processing Pipeline 18871c2bb8fe8a6beccebe48929c3c4c https://www.encodeproject.org/files/ENCFF224LIF/@@download/ENCFF224LIF.bigWig mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF044YOI bed narrowPeak peaks ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF258NUS, ENCFF647SBM 1954868 ENCODE Processing Pipeline 5197487dcd7f9e10ceb4f221e520c0cc https://www.encodeproject.org/files/ENCFF044YOI/@@download/ENCFF044YOI.bed.gz mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF488BZX bigWig fold change over control ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF258NUS, ENCFF647SBM 350262644 ENCODE Processing Pipeline 29bd3df75b09484e93f2d366aea619c3 https://www.encodeproject.org/files/ENCFF488BZX/@@download/ENCFF488BZX.bigWig mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF920VJA bigBed narrowPeak stable peaks ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF364SPR 2814525 ENCODE Processing Pipeline c968d925cc7b1a65e89d1ad358cbfcb9 https://www.encodeproject.org/files/ENCFF920VJA/@@download/ENCFF920VJA.bigBed mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF364SPR bed narrowPeak stable peaks ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF044YOI 1604453 ENCODE Processing Pipeline db4eb952995b2a2d48d4730d2ad4bdbb https://www.encodeproject.org/files/ENCFF364SPR/@@download/ENCFF364SPR.bed.gz mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IDR bam alignments ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 ENCFF001IDS, ENCFF001IDT, ENCFF001IDU, ENCFF001IDV 1119305700 Barbara Wold, Caltech 6b921a7ed23ea98998f62f2163ea8791 https://www.encodeproject.org/files/ENCFF001IDR/@@download/ENCFF001IDR.bam mm9 released insufficient read depth, insufficient read length ENCFF001IDS fastq reads ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 1 32 single-ended 392692266 Barbara Wold, Caltech 30a1184a3bace1c795ef8f49a674d5cd https://www.encodeproject.org/files/ENCFF001IDS/@@download/ENCFF001IDS.fastq.gz Illumina Genome Analyzer II released insufficient read depth, insufficient read length ENCFF001IDW bigWig signal ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 1 ENCFF001IDR 79478588 Barbara Wold, Caltech f5e9a583aeb5315b25c8be8a3c639bac https://www.encodeproject.org/files/ENCFF001IDW/@@download/ENCFF001IDW.bigWig mm9 released insufficient read depth, insufficient read length ENCFF001IDU fastq reads ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 1 32 single-ended 223912419 Barbara Wold, Caltech 57317cab1fbb9777ac9a8742d9e624ab https://www.encodeproject.org/files/ENCFF001IDU/@@download/ENCFF001IDU.fastq.gz Illumina Genome Analyzer II released insufficient read depth, insufficient read length ENCFF001IDV fastq reads ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 1 32 single-ended 197674966 Barbara Wold, Caltech 9d477bd290ad230bba21755f63944f14 https://www.encodeproject.org/files/ENCFF001IDV/@@download/ENCFF001IDV.fastq.gz Illumina Genome Analyzer II released insufficient read depth, insufficient read length ENCFF001IDT fastq reads ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 1 32 single-ended 214876284 Barbara Wold, Caltech 824d595a032705e80bc580bce271f971 https://www.encodeproject.org/files/ENCFF001IDT/@@download/ENCFF001IDT.fastq.gz Illumina Genome Analyzer II released insufficient read depth, insufficient read length ENCFF230ZXB bam unfiltered alignments ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 ENCFF001IDS, ENCFF001IDT, ENCFF001IDU, ENCFF001IDV, ENCFF806TVZ 1177837791 ENCODE Processing Pipeline dc0f58bad75e9586056d34be7f9675a1 https://www.encodeproject.org/files/ENCFF230ZXB/@@download/ENCFF230ZXB.bam mm10-minimal archived insufficient read depth, insufficient read length ENCFF414LJU bam unfiltered alignments ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 32 ENCFF001IDS, ENCFF001IDT, ENCFF001IDU, ENCFF001IDV, ENCFF018NEO 1178363780 ENCODE Processing Pipeline c7cfd130e9b10a209d02b138c62da6e3 https://www.encodeproject.org/files/ENCFF414LJU/@@download/ENCFF414LJU.bam mm10 released insufficient read depth, insufficient read length ENCFF122QLV bam alignments ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 32 ENCFF001IDS, ENCFF001IDT, ENCFF001IDU, ENCFF001IDV, ENCFF018NEO 402355030 ENCODE Processing Pipeline 312e0810511dcc638f8a80dc996b67b6 https://www.encodeproject.org/files/ENCFF122QLV/@@download/ENCFF122QLV.bam mm10 released insufficient read depth, insufficient read length ENCFF001IGK bigBed narrowPeak peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVE 987416 Barbara Wold, Caltech 2ceb94a6ee9b7353563161eecd6f130e https://www.encodeproject.org/files/ENCFF001IGK/@@download/ENCFF001IGK.bigBed mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IGL fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 354505514 Barbara Wold, Caltech ab3de5ee627beead9f205872d0804df4 https://www.encodeproject.org/files/ENCFF001IGL/@@download/ENCFF001IGL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IGM fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 468789419 Barbara Wold, Caltech d1f4b24c557959ebb259576a66c2c303 https://www.encodeproject.org/files/ENCFF001IGM/@@download/ENCFF001IGM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IGN fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 569539236 Barbara Wold, Caltech 04479943668dadbb10e2c0a6edc12665 https://www.encodeproject.org/files/ENCFF001IGN/@@download/ENCFF001IGN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IGO fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 409630624 Barbara Wold, Caltech bb2fe9f30ca70354a3df29cf49e72345 https://www.encodeproject.org/files/ENCFF001IGO/@@download/ENCFF001IGO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IGP fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 350416581 Barbara Wold, Caltech 1b4ff10730de588c66174eba18481e24 https://www.encodeproject.org/files/ENCFF001IGP/@@download/ENCFF001IGP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IGQ fastq reads ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 361993040 Barbara Wold, Caltech c9c3d293a70231cc4c5dc26bb6b0e39f https://www.encodeproject.org/files/ENCFF001IGQ/@@download/ENCFF001IGQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IGR bigWig signal ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHB 130474093 Barbara Wold, Caltech b490553a42c6914d5394880101b3fdfb https://www.encodeproject.org/files/ENCFF001IGR/@@download/ENCFF001IGR.bigWig mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IHB bam alignments ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IGL, ENCFF001IGM, ENCFF001IGN, ENCFF001IGO, ENCFF001IGP, ENCFF001IGQ 2573873462 Barbara Wold, Caltech 5a15994c672069a170b212dd129e16a7 https://www.encodeproject.org/files/ENCFF001IHB/@@download/ENCFF001IHB.bam mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001XVE bed narrowPeak peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHB 562073 Barbara Wold, Caltech 93ccb8a660b7bee933555e07b415ca78 https://www.encodeproject.org/files/ENCFF001XVE/@@download/ENCFF001XVE.bed.gz mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF439IMG bam unfiltered alignments ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGL, ENCFF001IGM, ENCFF001IGN, ENCFF001IGO, ENCFF001IGP, ENCFF001IGQ, ENCFF018NEO 2651117488 ENCODE Processing Pipeline 4439a3fc5374693f9e84b121c71af9c6 https://www.encodeproject.org/files/ENCFF439IMG/@@download/ENCFF439IMG.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF194DXG bam alignments ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGL, ENCFF001IGM, ENCFF001IGN, ENCFF001IGO, ENCFF001IGP, ENCFF001IGQ, ENCFF018NEO 615283563 ENCODE Processing Pipeline b002458df956692115f27295cffb0d66 https://www.encodeproject.org/files/ENCFF194DXG/@@download/ENCFF194DXG.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF804NRW bigWig signal p-value ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF194DXG, ENCFF258NUS 357386113 ENCODE Processing Pipeline 74420181e11764ccf912ed708072684e https://www.encodeproject.org/files/ENCFF804NRW/@@download/ENCFF804NRW.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF059BXG bigWig fold change over control ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF194DXG, ENCFF258NUS 247531438 ENCODE Processing Pipeline c98ed6c9e587db603df356ecc8ea552b https://www.encodeproject.org/files/ENCFF059BXG/@@download/ENCFF059BXG.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF431UTD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF118YGD, ENCFF547MET 552921 ENCODE Processing Pipeline 9747916c759c892baee88aa8ba74e62c https://www.encodeproject.org/files/ENCFF431UTD/@@download/ENCFF431UTD.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF118YGD bed narrowPeak peaks and background as input for IDR ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF194DXG, ENCFF258NUS 5197946 ENCODE Processing Pipeline 50603f7d49ad4dabff171f890b99a930 https://www.encodeproject.org/files/ENCFF118YGD/@@download/ENCFF118YGD.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF733GLH bigBed narrowPeak peaks and background as input for IDR ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF118YGD 10627464 ENCODE Processing Pipeline 4fe0910f1fae6dfca792e3a9c9d366ff https://www.encodeproject.org/files/ENCFF733GLH/@@download/ENCFF733GLH.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF147NFZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF431UTD 903051 ENCODE Processing Pipeline e44266daecbe0c64d347440e10a5879f https://www.encodeproject.org/files/ENCFF147NFZ/@@download/ENCFF147NFZ.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001KIP bam alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KJA 491044481 Bing Ren, UCSD 4f3115b7ae58e0ba1d8327fdd03d5f6b https://www.encodeproject.org/files/ENCFF001KIP/@@download/ENCFF001KIP.bam mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KIQ bigBed broadPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXK 771422 Bing Ren, UCSD 6b05a926fa0d34b52018d6f12e1dd9cb https://www.encodeproject.org/files/ENCFF001KIQ/@@download/ENCFF001KIQ.bigBed mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KIS bigWig signal ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KIP, ENCFF001KIT 55642639 Bing Ren, UCSD b3fbc24894d323609f3866faa576cfe0 https://www.encodeproject.org/files/ENCFF001KIS/@@download/ENCFF001KIS.bigWig mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KIT bam alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KIZ 489670583 Bing Ren, UCSD f6289fbe36ce9853cca490028b879569 https://www.encodeproject.org/files/ENCFF001KIT/@@download/ENCFF001KIT.bam mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KIZ fastq reads ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 472943617 Bing Ren, UCSD 870e4aca36cbe10f0e8750d2b71fe31e https://www.encodeproject.org/files/ENCFF001KIZ/@@download/ENCFF001KIZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KKF/ released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KJA fastq reads ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 466024720 Bing Ren, UCSD 8e93af677d6a280826a830b3d5b7b29a https://www.encodeproject.org/files/ENCFF001KJA/@@download/ENCFF001KJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KKE/ released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001XXK bed broadPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KIP, ENCFF001KIT 508001 Bing Ren, UCSD 4f4188cb0dc7ec4fec89200d0755b843 https://www.encodeproject.org/files/ENCFF001XXK/@@download/ENCFF001XXK.bed.gz mm9 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF686ADC bam unfiltered alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIZ, ENCFF018NEO 515198272 ENCODE Processing Pipeline 4eace8dfdeca620d053f21359c43cf9b https://www.encodeproject.org/files/ENCFF686ADC/@@download/ENCFF686ADC.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF599QRY bam unfiltered alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KJA, ENCFF018NEO 533233535 ENCODE Processing Pipeline 7382eabca811bbc80d8f0e695f2fcd7b https://www.encodeproject.org/files/ENCFF599QRY/@@download/ENCFF599QRY.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF772RIL bam alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KJA, ENCFF018NEO 407644590 ENCODE Processing Pipeline d0b2c7a27af772487ac4a8ecabaffe16 https://www.encodeproject.org/files/ENCFF772RIL/@@download/ENCFF772RIL.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF188XVF bam alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIZ, ENCFF018NEO 390478766 ENCODE Processing Pipeline 92b52b5525d70962849395e92e02f11b https://www.encodeproject.org/files/ENCFF188XVF/@@download/ENCFF188XVF.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF191VQZ bed narrowPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF188XVF, ENCFF396FNQ, ENCFF772RIL, ENCFF862XUW 1854586 ENCODE Processing Pipeline e3345f8ae098939afad5a070fd1049e7 https://www.encodeproject.org/files/ENCFF191VQZ/@@download/ENCFF191VQZ.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF829FSX bigBed narrowPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF191VQZ 4957769 ENCODE Processing Pipeline b3178939dc4980d2418f5b09563c884a https://www.encodeproject.org/files/ENCFF829FSX/@@download/ENCFF829FSX.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF346YAH bed narrowPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF396FNQ, ENCFF772RIL, ENCFF862XUW 1650403 ENCODE Processing Pipeline 02b592df458aaf40e5e435745317117a https://www.encodeproject.org/files/ENCFF346YAH/@@download/ENCFF346YAH.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF012DNC bigBed narrowPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF346YAH 4538106 ENCODE Processing Pipeline 8afc97d6d93ea1765eaf7c57b8ba2696 https://www.encodeproject.org/files/ENCFF012DNC/@@download/ENCFF012DNC.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF660CQT bed narrowPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF188XVF, ENCFF396FNQ, ENCFF862XUW 1959087 ENCODE Processing Pipeline 8796b596e7e1a734ea8f1db5a5beca1e https://www.encodeproject.org/files/ENCFF660CQT/@@download/ENCFF660CQT.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF884LSG bigBed narrowPeak peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF660CQT 5310851 ENCODE Processing Pipeline 10cf1d854493b617ffae0714e6112a97 https://www.encodeproject.org/files/ENCFF884LSG/@@download/ENCFF884LSG.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF604XON bigWig signal p-value ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF188XVF, ENCFF396FNQ, ENCFF862XUW 267013464 ENCODE Processing Pipeline 883f48c6a032095549b3ee97d36a0264 https://www.encodeproject.org/files/ENCFF604XON/@@download/ENCFF604XON.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF126NSO bigWig signal p-value ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF396FNQ, ENCFF772RIL, ENCFF862XUW 289453108 ENCODE Processing Pipeline 76eb1b1660ce491c829bb352d6902146 https://www.encodeproject.org/files/ENCFF126NSO/@@download/ENCFF126NSO.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF883KBO bigWig signal p-value ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF188XVF, ENCFF396FNQ, ENCFF772RIL, ENCFF862XUW 390847395 ENCODE Processing Pipeline 725392efa95b5567c916aae5c8dd0283 https://www.encodeproject.org/files/ENCFF883KBO/@@download/ENCFF883KBO.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF179NTO bigWig fold change over control ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF396FNQ, ENCFF772RIL, ENCFF862XUW 230984457 ENCODE Processing Pipeline 748ae69e220f84f9906f169b57f469dc https://www.encodeproject.org/files/ENCFF179NTO/@@download/ENCFF179NTO.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF657WLN bigWig fold change over control ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF188XVF, ENCFF396FNQ, ENCFF862XUW 195669780 ENCODE Processing Pipeline 1a472b1d7afb07f0fc61cbf80b309424 https://www.encodeproject.org/files/ENCFF657WLN/@@download/ENCFF657WLN.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF338WZP bed narrowPeak replicated peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF191VQZ, ENCFF346YAH, ENCFF660CQT 2011153 ENCODE Processing Pipeline d0cd458b5819f99d76b6da3ccb6005e5 https://www.encodeproject.org/files/ENCFF338WZP/@@download/ENCFF338WZP.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF188DKO bigWig fold change over control ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF188XVF, ENCFF396FNQ, ENCFF772RIL, ENCFF862XUW 353571483 ENCODE Processing Pipeline 750bae19e55f285346433f8c0953307b https://www.encodeproject.org/files/ENCFF188DKO/@@download/ENCFF188DKO.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF115EMU bigBed narrowPeak replicated peaks ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF338WZP 3919423 ENCODE Processing Pipeline 3c46eddbab8b178417d81bab9fb1b127 https://www.encodeproject.org/files/ENCFF115EMU/@@download/ENCFF115EMU.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001NSN bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NSQ 472064371 Michael Snyder, Stanford deefa333f936322dd38569d1efd9f49c https://www.encodeproject.org/files/ENCFF001NSN/@@download/ENCFF001NSN.bam mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSO bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NSS 577967067 Michael Snyder, Stanford 9130e24921dc122c37b21f1af328c5c6 https://www.encodeproject.org/files/ENCFF001NSO/@@download/ENCFF001NSO.bam mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSP bigBed narrowPeak peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJN 163163 Michael Snyder, Stanford bea1cc661d60eeab8ade8f61b7244af5 https://www.encodeproject.org/files/ENCFF001NSP/@@download/ENCFF001NSP.bigBed mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSQ fastq reads ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 920487504 Michael Snyder, Stanford 6fb1baea7318694adb55067f654a9b39 https://www.encodeproject.org/files/ENCFF001NSQ/@@download/ENCFF001NSQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSS fastq reads ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1390380610 Michael Snyder, Stanford a4bd075033aef9015285de8d173d03d1 https://www.encodeproject.org/files/ENCFF001NSS/@@download/ENCFF001NSS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSU bigWig signal ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSN, ENCFF001NSO 549388468 Michael Snyder, Stanford 303785d46d8341b4328e7b111bbcdc4b https://www.encodeproject.org/files/ENCFF001NSU/@@download/ENCFF001NSU.bigWig mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJN bed narrowPeak peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSN, ENCFF001NSO 49911 Michael Snyder, Stanford 4101de7c1445d167b2573d4b27475230 https://www.encodeproject.org/files/ENCFF001YJN/@@download/ENCFF001YJN.bed.gz mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF263BNN bam unfiltered alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSQ, ENCFF018NEO 1034365583 ENCODE Processing Pipeline 439f4c73868c0a7d4074e98864fafd65 https://www.encodeproject.org/files/ENCFF263BNN/@@download/ENCFF263BNN.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF078QCR bam unfiltered alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NSS, ENCFF018NEO 1555901948 ENCODE Processing Pipeline 78571cdae608db81e66d1c3328b728a7 https://www.encodeproject.org/files/ENCFF078QCR/@@download/ENCFF078QCR.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF609VXJ bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSQ, ENCFF018NEO 713201107 ENCODE Processing Pipeline c81a15bd1992c2b93c2215e6cb7c8a45 https://www.encodeproject.org/files/ENCFF609VXJ/@@download/ENCFF609VXJ.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF839CIT bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NSS, ENCFF018NEO 1009588005 ENCODE Processing Pipeline 29ceb40f94999a433512f3f2232e4af1 https://www.encodeproject.org/files/ENCFF839CIT/@@download/ENCFF839CIT.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF517BOP bigWig signal p-value ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF609VXJ 334953569 ENCODE Processing Pipeline 51c355b5966949381f732048ad53b6bc https://www.encodeproject.org/files/ENCFF517BOP/@@download/ENCFF517BOP.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF915TBX bigWig fold change over control ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF609VXJ 329499595 ENCODE Processing Pipeline eb736521fca866beb5443ed5020b5c8d https://www.encodeproject.org/files/ENCFF915TBX/@@download/ENCFF915TBX.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF699YLJ bed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF839CIT 4773159 ENCODE Processing Pipeline a5711d0367bcab03be9533bae23698e1 https://www.encodeproject.org/files/ENCFF699YLJ/@@download/ENCFF699YLJ.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF262YAQ bed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF609VXJ 4894458 ENCODE Processing Pipeline 7b640f7d2aed4c2a8c9d609bcda7da10 https://www.encodeproject.org/files/ENCFF262YAQ/@@download/ENCFF262YAQ.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF520BUV bigWig signal p-value ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF609VXJ, ENCFF839CIT 337106614 ENCODE Processing Pipeline decd40ad6e16bda5ab645ffe690a5f2c https://www.encodeproject.org/files/ENCFF520BUV/@@download/ENCFF520BUV.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF276SCN bigWig fold change over control ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF839CIT 366781385 ENCODE Processing Pipeline 101d76ad5af65a2df5b70a5dbc37fcf4 https://www.encodeproject.org/files/ENCFF276SCN/@@download/ENCFF276SCN.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF013LGH bigWig fold change over control ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF609VXJ, ENCFF839CIT 602684921 ENCODE Processing Pipeline cb92bd6d56e9f5b1d78b1cabf3b6002e https://www.encodeproject.org/files/ENCFF013LGH/@@download/ENCFF013LGH.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF375ZYJ bed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF609VXJ, ENCFF839CIT 5620449 ENCODE Processing Pipeline 2127dab9b719c8ce33af27437bce1d81 https://www.encodeproject.org/files/ENCFF375ZYJ/@@download/ENCFF375ZYJ.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF579MRA bigBed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF262YAQ 10660812 ENCODE Processing Pipeline 70f98be12188b6078bf8104a92be723e https://www.encodeproject.org/files/ENCFF579MRA/@@download/ENCFF579MRA.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF350QGT bigBed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF699YLJ 10597366 ENCODE Processing Pipeline 43a6fcb43193d4c0d960fb133a0c2fad https://www.encodeproject.org/files/ENCFF350QGT/@@download/ENCFF350QGT.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF639AUY bigWig signal p-value ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF839CIT 311163953 ENCODE Processing Pipeline f9a787465027cb354642c155b51c45c1 https://www.encodeproject.org/files/ENCFF639AUY/@@download/ENCFF639AUY.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF672FKP bed narrowPeak optimal idr thresholded peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF262YAQ, ENCFF375ZYJ, ENCFF547MET, ENCFF699YLJ 122568 ENCODE Processing Pipeline 39c3f442a8640ad8caff33646eca95d6 https://www.encodeproject.org/files/ENCFF672FKP/@@download/ENCFF672FKP.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF790AUX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF672FKP 276224 ENCODE Processing Pipeline 2be1cc1848857bdc670b33a97fa1f5ce https://www.encodeproject.org/files/ENCFF790AUX/@@download/ENCFF790AUX.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF456WXT bigBed narrowPeak peaks and background as input for IDR ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF375ZYJ 13055419 ENCODE Processing Pipeline 3ce399c7d2ffe6bb69337eb93a53bc06 https://www.encodeproject.org/files/ENCFF456WXT/@@download/ENCFF456WXT.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001IFR bigBed narrowPeak peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVA 694519 Barbara Wold, Caltech 86ad649193a7b36f39f0fca421a60944 https://www.encodeproject.org/files/ENCFF001IFR/@@download/ENCFF001IFR.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IFS fastq reads ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 701466814 Barbara Wold, Caltech 7f3c46009e4b62f6bfd78f6067254874 https://www.encodeproject.org/files/ENCFF001IFS/@@download/ENCFF001IFS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IFT fastq reads ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 656146691 Barbara Wold, Caltech 7adbaf4d55d962f1e3206850ae89dd7b https://www.encodeproject.org/files/ENCFF001IFT/@@download/ENCFF001IFT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IFU bigWig signal ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFV 89148823 Barbara Wold, Caltech c1f5f709b60e5779fa06a904306a1fc6 https://www.encodeproject.org/files/ENCFF001IFU/@@download/ENCFF001IFU.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001IFV bam alignments ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IFS, ENCFF001IFT 1405203986 Barbara Wold, Caltech 58fb0f6446a8fd6223380834bf211365 https://www.encodeproject.org/files/ENCFF001IFV/@@download/ENCFF001IFV.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF001XVA bed narrowPeak peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFV 387321 Barbara Wold, Caltech 6ebcfc51411ffc0ee4af6105c9829f55 https://www.encodeproject.org/files/ENCFF001XVA/@@download/ENCFF001XVA.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF841SDD bam unfiltered alignments ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFS, ENCFF001IFT, ENCFF018NEO 1445562371 ENCODE Processing Pipeline 9246216dc1e6412f0b4727f2d65e23e3 https://www.encodeproject.org/files/ENCFF841SDD/@@download/ENCFF841SDD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF640NNK bam alignments ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFS, ENCFF001IFT, ENCFF018NEO 506340195 ENCODE Processing Pipeline 746fa4d169cd0596a9608a2a3d6e6a52 https://www.encodeproject.org/files/ENCFF640NNK/@@download/ENCFF640NNK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF910OZJ bigWig signal p-value ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF640NNK 277063311 ENCODE Processing Pipeline 1e8ee48f92462ed6a093017c776eda43 https://www.encodeproject.org/files/ENCFF910OZJ/@@download/ENCFF910OZJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF501CSO bed narrowPeak peaks and background as input for IDR ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF640NNK 5443714 ENCODE Processing Pipeline ba086916990a1199e124b56e6f521fb1 https://www.encodeproject.org/files/ENCFF501CSO/@@download/ENCFF501CSO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF680DPI bigWig fold change over control ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF640NNK 170519745 ENCODE Processing Pipeline 26242f7e8301db2d8ceb20b6282f4d8a https://www.encodeproject.org/files/ENCFF680DPI/@@download/ENCFF680DPI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF799XWG bigBed narrowPeak peaks and background as input for IDR ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF501CSO 11525190 ENCODE Processing Pipeline f91189c435c4789cb2f918bcd0dc2537 https://www.encodeproject.org/files/ENCFF799XWG/@@download/ENCFF799XWG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF276CXM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF501CSO, ENCFF547MET 421511 ENCODE Processing Pipeline 4eff2d14ae1ab6c2008d65557f28ac4a https://www.encodeproject.org/files/ENCFF276CXM/@@download/ENCFF276CXM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF636SKZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF276CXM 866672 ENCODE Processing Pipeline aad8c4077a00560078062469e239575f https://www.encodeproject.org/files/ENCFF636SKZ/@@download/ENCFF636SKZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF002DQY fastq reads ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 2 36 single-ended 582729534 Bing Ren, UCSD e13ef1d0fa47ece245a60c24a45b6df9 SRA:SRR3652879 https://www.encodeproject.org/files/ENCFF002DQY/@@download/ENCFF002DQY.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APX/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRA fastq reads ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 2 36 single-ended 673542291 Bing Ren, UCSD 54208d1ae8384265244a4d0cbd2db93b SRA:SRR3652877 https://www.encodeproject.org/files/ENCFF002DRA/@@download/ENCFF002DRA.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQA/ released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRC fastq reads ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 36 single-ended 1171673998 Bing Ren, UCSD 42c9b0b0ed283410850ae7b213221dd6 SRA:SRR3652880 https://www.encodeproject.org/files/ENCFF002DRC/@@download/ENCFF002DRC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APX/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRD fastq reads ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 36 single-ended 1189990033 Bing Ren, UCSD 7e438a6089a9a7250c10c30cbbb33a0f SRA:SRR3652878 https://www.encodeproject.org/files/ENCFF002DRD/@@download/ENCFF002DRD.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQA/ released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF600ACM bam alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF002DQY, ENCFF002DRC, ENCFF806TVZ 977607243 ENCODE Processing Pipeline 7a4569394f41e40d0f180e173ee282aa https://www.encodeproject.org/files/ENCFF600ACM/@@download/ENCFF600ACM.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF325CZK bam alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF002DRA, ENCFF002DRD, ENCFF806TVZ 1141528107 ENCODE Processing Pipeline ca0616fbe3a327d133e7f56fe7f1c636 https://www.encodeproject.org/files/ENCFF325CZK/@@download/ENCFF325CZK.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF857VZB bed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF009SMR, ENCFF600ACM, ENCFF775YLK 561051 ENCODE Processing Pipeline b77376f54b2b5e8b43d78310477c372f https://www.encodeproject.org/files/ENCFF857VZB/@@download/ENCFF857VZB.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF252CXB bed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF009SMR, ENCFF325CZK, ENCFF600ACM, ENCFF775YLK 552833 ENCODE Processing Pipeline c1d1bbf403882154424a371b2d88a53b https://www.encodeproject.org/files/ENCFF252CXB/@@download/ENCFF252CXB.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF441YLP bed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF009SMR, ENCFF325CZK, ENCFF775YLK 569663 ENCODE Processing Pipeline 4f60f23327879c8e01407092be64bfc0 https://www.encodeproject.org/files/ENCFF441YLP/@@download/ENCFF441YLP.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF724SJV bigBed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF857VZB 1382851 ENCODE Processing Pipeline 2e2375d12e08b8c5479001ea9fea3ba8 https://www.encodeproject.org/files/ENCFF724SJV/@@download/ENCFF724SJV.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF479RPJ bigBed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF252CXB 1345209 ENCODE Processing Pipeline 728fdbca5027fca379a14d1d68c5b447 https://www.encodeproject.org/files/ENCFF479RPJ/@@download/ENCFF479RPJ.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF554SUV bigBed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF441YLP 1103928 ENCODE Processing Pipeline 916457371d5bbc38dc520a3d5ec4dbdd https://www.encodeproject.org/files/ENCFF554SUV/@@download/ENCFF554SUV.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF912NGZ bigWig signal p-value ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF009SMR, ENCFF600ACM, ENCFF775YLK 523387876 ENCODE Processing Pipeline 08df61f0dc72d262f5570cf90400bea3 https://www.encodeproject.org/files/ENCFF912NGZ/@@download/ENCFF912NGZ.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF902RCM bigWig signal p-value ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF009SMR, ENCFF325CZK, ENCFF775YLK 513693477 ENCODE Processing Pipeline f6382192aa0643c856b84cdb81d9516c https://www.encodeproject.org/files/ENCFF902RCM/@@download/ENCFF902RCM.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF790TVK bigWig signal p-value ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF009SMR, ENCFF325CZK, ENCFF600ACM, ENCFF775YLK 747307025 ENCODE Processing Pipeline 0b3255d06bc2bfee4626485346c0eda4 https://www.encodeproject.org/files/ENCFF790TVK/@@download/ENCFF790TVK.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF350EHH bigWig fold change over control ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF009SMR, ENCFF600ACM, ENCFF775YLK 570028987 ENCODE Processing Pipeline 1cce60457d972e38de07515c9e7a2271 https://www.encodeproject.org/files/ENCFF350EHH/@@download/ENCFF350EHH.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF666GAG bigWig fold change over control ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF009SMR, ENCFF325CZK, ENCFF775YLK 629849872 ENCODE Processing Pipeline 6a5a26e1f10e6d430e02cc9c77385907 https://www.encodeproject.org/files/ENCFF666GAG/@@download/ENCFF666GAG.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF429AEP bigWig fold change over control ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF009SMR, ENCFF325CZK, ENCFF600ACM, ENCFF775YLK 881641533 ENCODE Processing Pipeline b9717f30fdef3dfc5cb7ae1318563539 https://www.encodeproject.org/files/ENCFF429AEP/@@download/ENCFF429AEP.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF153SJX bed narrowPeak replicated peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF252CXB, ENCFF441YLP, ENCFF857VZB 250768 ENCODE Processing Pipeline 646f6428c3ef178a06b1fce119ea356d https://www.encodeproject.org/files/ENCFF153SJX/@@download/ENCFF153SJX.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF144JNN bigBed narrowPeak replicated peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF153SJX 512553 ENCODE Processing Pipeline 016c1f576fd575e2cff3d60a9d1298bd https://www.encodeproject.org/files/ENCFF144JNN/@@download/ENCFF144JNN.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF399JZB bam unfiltered alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRA, ENCFF002DRD, ENCFF018NEO 2405482095 ENCODE Processing Pipeline 3b2353f4d12cde4de9d93c52da6754c3 https://www.encodeproject.org/files/ENCFF399JZB/@@download/ENCFF399JZB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF216RTO bam unfiltered alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DQY, ENCFF002DRC, ENCFF018NEO 2251216271 ENCODE Processing Pipeline 0d21525c105be478e4e9ad79f5ea8bf2 https://www.encodeproject.org/files/ENCFF216RTO/@@download/ENCFF216RTO.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF019TTQ bam alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRA, ENCFF002DRD, ENCFF018NEO 1140868915 ENCODE Processing Pipeline bf2d5801f053ed548b672138fa07d75e https://www.encodeproject.org/files/ENCFF019TTQ/@@download/ENCFF019TTQ.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF771PAB bam alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DQY, ENCFF002DRC, ENCFF018NEO 977016104 ENCODE Processing Pipeline df73f1fb7120d763e675bbfe3774b197 https://www.encodeproject.org/files/ENCFF771PAB/@@download/ENCFF771PAB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF461IYD bigBed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF482RRL 322184 ENCODE Processing Pipeline 9ccf1f61534bc2b8dc8b462a8d423af1 https://www.encodeproject.org/files/ENCFF461IYD/@@download/ENCFF461IYD.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF482RRL bed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF019TTQ, ENCFF911DNW 116702 ENCODE Processing Pipeline be5e81812ef012d2be8fcd4067560a38 https://www.encodeproject.org/files/ENCFF482RRL/@@download/ENCFF482RRL.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF038IAW bigBed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF910DKR 1358949 ENCODE Processing Pipeline 73e79e1723e3bf4a8805a6542c3d29e4 https://www.encodeproject.org/files/ENCFF038IAW/@@download/ENCFF038IAW.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF910DKR bed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF771PAB, ENCFF831XWF, ENCFF911DNW 548724 ENCODE Processing Pipeline 85c668bb236c41a921ada3cda3596dbd https://www.encodeproject.org/files/ENCFF910DKR/@@download/ENCFF910DKR.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF559QYH bed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF019TTQ, ENCFF771PAB, ENCFF831XWF, ENCFF911DNW 438646 ENCODE Processing Pipeline c404e2f557271e6d42fcdeb56d3773db https://www.encodeproject.org/files/ENCFF559QYH/@@download/ENCFF559QYH.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF021TMI bigBed narrowPeak peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF559QYH 1109397 ENCODE Processing Pipeline 7cdf674e7535f1639d88bfdea10d160b https://www.encodeproject.org/files/ENCFF021TMI/@@download/ENCFF021TMI.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF444XAE bigWig signal p-value ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF771PAB, ENCFF831XWF, ENCFF911DNW 620161132 ENCODE Processing Pipeline a0af0c7c7c59a69f0320e42ad5a0a8f6 https://www.encodeproject.org/files/ENCFF444XAE/@@download/ENCFF444XAE.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF644ONG bigWig signal p-value ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF019TTQ, ENCFF911DNW 440882183 ENCODE Processing Pipeline f1db980cd7d47c6b238fcfad2f720f09 https://www.encodeproject.org/files/ENCFF644ONG/@@download/ENCFF644ONG.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF961JPN bigWig signal p-value ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF019TTQ, ENCFF771PAB, ENCFF831XWF, ENCFF911DNW 762923934 ENCODE Processing Pipeline d8fe18fc653e0fbf8b162a60665942be https://www.encodeproject.org/files/ENCFF961JPN/@@download/ENCFF961JPN.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF450OEB bigWig fold change over control ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF019TTQ, ENCFF911DNW 511400665 ENCODE Processing Pipeline d9c90e3228874e6710c9b51430a235cf https://www.encodeproject.org/files/ENCFF450OEB/@@download/ENCFF450OEB.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF173NMT bigWig fold change over control ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF771PAB, ENCFF831XWF, ENCFF911DNW 558996096 ENCODE Processing Pipeline 6c96ff2a878b0958222e15e7c15340e6 https://www.encodeproject.org/files/ENCFF173NMT/@@download/ENCFF173NMT.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF010EOK bed narrowPeak replicated peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF482RRL, ENCFF559QYH, ENCFF910DKR 231161 ENCODE Processing Pipeline a2c25ae51b5b3d7e135f0b0305491e8b https://www.encodeproject.org/files/ENCFF010EOK/@@download/ENCFF010EOK.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF814OZR bigWig fold change over control ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF019TTQ, ENCFF771PAB, ENCFF831XWF, ENCFF911DNW 916675915 ENCODE Processing Pipeline 58330f97aa1a4c8f8f86457af640d449 https://www.encodeproject.org/files/ENCFF814OZR/@@download/ENCFF814OZR.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF834ZZG bigBed narrowPeak replicated peaks ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF010EOK 605180 ENCODE Processing Pipeline 8bca5a40f6fb4ab494d57aff297e75bf https://www.encodeproject.org/files/ENCFF834ZZG/@@download/ENCFF834ZZG.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF170JRT fastq reads ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1974144263 Bing Ren, UCSD fee96c0afffaf1aac984adba07694e2a SRA:SRR3651765 https://www.encodeproject.org/files/ENCFF170JRT/@@download/ENCFF170JRT.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF441BDB fastq reads ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1146928155 Bing Ren, UCSD 4a51c821f48eeab2358c5665a79c25dd SRA:SRR3651766 https://www.encodeproject.org/files/ENCFF441BDB/@@download/ENCFF441BDB.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF683GIH fastq reads ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1278872662 Bing Ren, UCSD 169a6ef924b712606adaa456be33e4de SRA:SRR3651768 https://www.encodeproject.org/files/ENCFF683GIH/@@download/ENCFF683GIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF280OBC fastq reads ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 1122654677 Bing Ren, UCSD 155f2192b05d2c0e4b07ad3c3f89fc73 SRA:SRR3651767 https://www.encodeproject.org/files/ENCFF280OBC/@@download/ENCFF280OBC.fastq.gz Illumina HiSeq 2500 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF213QFH fastq reads ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2270818181 Bing Ren, UCSD 41326d98be819b2705183a73d5e7774f SRA:SRR3651769 https://www.encodeproject.org/files/ENCFF213QFH/@@download/ENCFF213QFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF035CQN bam alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF170JRT, ENCFF280OBC, ENCFF441BDB, ENCFF806TVZ 3458736773 ENCODE Processing Pipeline fc05af85f2c1972e5b05833fa4611d99 https://www.encodeproject.org/files/ENCFF035CQN/@@download/ENCFF035CQN.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF344FRV bam alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF213QFH, ENCFF683GIH, ENCFF806TVZ 3070837210 ENCODE Processing Pipeline d619fe43658411e00275a807441bc7ff https://www.encodeproject.org/files/ENCFF344FRV/@@download/ENCFF344FRV.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF684LGN bed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF035CQN, ENCFF236JLN, ENCFF711NEU 734214 ENCODE Processing Pipeline 5370ecf1137047b2161181ee1c04109e https://www.encodeproject.org/files/ENCFF684LGN/@@download/ENCFF684LGN.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF675GFK bed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF344FRV, ENCFF711NEU 865990 ENCODE Processing Pipeline 331b5b5fd59cf1d5f1014e7c3391c4a0 https://www.encodeproject.org/files/ENCFF675GFK/@@download/ENCFF675GFK.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF877GVO bed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF035CQN, ENCFF236JLN, ENCFF344FRV, ENCFF711NEU 498462 ENCODE Processing Pipeline 7839efb745788065acd3aea6e971c92a https://www.encodeproject.org/files/ENCFF877GVO/@@download/ENCFF877GVO.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF389GIR bigBed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF684LGN 1735747 ENCODE Processing Pipeline d64f5adde5b1fd84267786ec762cb4f3 https://www.encodeproject.org/files/ENCFF389GIR/@@download/ENCFF389GIR.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF606ZBH bigBed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF877GVO 1379691 ENCODE Processing Pipeline 9b1f89fe421a77f74b1d7ca3506957b0 https://www.encodeproject.org/files/ENCFF606ZBH/@@download/ENCFF606ZBH.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF676VCK bigBed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF675GFK 2015786 ENCODE Processing Pipeline 12ff6c869b22a15f6ed476b7ef23ba73 https://www.encodeproject.org/files/ENCFF676VCK/@@download/ENCFF676VCK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF073STW bigWig signal p-value ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF344FRV, ENCFF711NEU 940640148 ENCODE Processing Pipeline 1c10278d00953825b55e19e658d8dd18 https://www.encodeproject.org/files/ENCFF073STW/@@download/ENCFF073STW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF798ORB bigWig signal p-value ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF035CQN, ENCFF236JLN, ENCFF711NEU 1017129729 ENCODE Processing Pipeline 228569c8f879639cae72c648ff0351d7 https://www.encodeproject.org/files/ENCFF798ORB/@@download/ENCFF798ORB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF086JEU bigWig signal p-value ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF035CQN, ENCFF236JLN, ENCFF344FRV, ENCFF711NEU 1219727610 ENCODE Processing Pipeline 11b834d262a964943e16af5923a32bbb https://www.encodeproject.org/files/ENCFF086JEU/@@download/ENCFF086JEU.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF576QTZ bigWig fold change over control ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF344FRV, ENCFF711NEU 1138068943 ENCODE Processing Pipeline 0ffbb8b42eb7181f819050024b2efbb3 https://www.encodeproject.org/files/ENCFF576QTZ/@@download/ENCFF576QTZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF403BCA bigWig fold change over control ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF035CQN, ENCFF236JLN, ENCFF344FRV, ENCFF711NEU 1641794863 ENCODE Processing Pipeline 4020e8e6e3128eb23853ffddf7b85431 https://www.encodeproject.org/files/ENCFF403BCA/@@download/ENCFF403BCA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF120PMN bigWig fold change over control ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF035CQN, ENCFF236JLN, ENCFF711NEU 1171086760 ENCODE Processing Pipeline 5f5a6d2dcb1672db61f134e55e412a70 https://www.encodeproject.org/files/ENCFF120PMN/@@download/ENCFF120PMN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF793RFJ bigBed narrowPeak replicated peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF516SBS 972718 ENCODE Processing Pipeline 3d8f7e258afb2e96c24bf387801f18a0 https://www.encodeproject.org/files/ENCFF793RFJ/@@download/ENCFF793RFJ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF516SBS bed narrowPeak replicated peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF675GFK, ENCFF684LGN, ENCFF877GVO 399940 ENCODE Processing Pipeline 750acad3f7fffdd85aa130c992e2e445 https://www.encodeproject.org/files/ENCFF516SBS/@@download/ENCFF516SBS.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF550ZUF bam unfiltered alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF170JRT, ENCFF280OBC, ENCFF441BDB 5087608802 ENCODE Processing Pipeline 988d11ad0adef408ec58ed8742b8b6b2 https://www.encodeproject.org/files/ENCFF550ZUF/@@download/ENCFF550ZUF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF933LGS bam unfiltered alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF213QFH, ENCFF683GIH 4276525018 ENCODE Processing Pipeline 205049d1f31a52fc0e6ea9148daac25d https://www.encodeproject.org/files/ENCFF933LGS/@@download/ENCFF933LGS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF871PQI bam alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF170JRT, ENCFF280OBC, ENCFF441BDB 3457983956 ENCODE Processing Pipeline e62675cb4b1677a9110604eb822116fa https://www.encodeproject.org/files/ENCFF871PQI/@@download/ENCFF871PQI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF677RAC bam alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF213QFH, ENCFF683GIH 3070194011 ENCODE Processing Pipeline 94f315d889758b91c5e8662b580712fa https://www.encodeproject.org/files/ENCFF677RAC/@@download/ENCFF677RAC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF141PQX bed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF580YCN, ENCFF677RAC 792491 ENCODE Processing Pipeline 2691de3cca62ccb88a2117962f9a97b5 https://www.encodeproject.org/files/ENCFF141PQX/@@download/ENCFF141PQX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF188JWA bed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF580YCN, ENCFF677RAC, ENCFF871PQI 950979 ENCODE Processing Pipeline 79c9f158c4a0b2e3eddead2049756b15 https://www.encodeproject.org/files/ENCFF188JWA/@@download/ENCFF188JWA.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF780MKQ bed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF871PQI 750338 ENCODE Processing Pipeline f16209c867f5d38aa071a322c029abb1 https://www.encodeproject.org/files/ENCFF780MKQ/@@download/ENCFF780MKQ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF243XSM bigBed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF780MKQ 1779075 ENCODE Processing Pipeline c3e527d8b725e738725e328563981aa6 https://www.encodeproject.org/files/ENCFF243XSM/@@download/ENCFF243XSM.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF675HEI bigBed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF188JWA 2109392 ENCODE Processing Pipeline 93734e87d7c00be47090a5a6ff41eba3 https://www.encodeproject.org/files/ENCFF675HEI/@@download/ENCFF675HEI.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF816ZXB bigBed narrowPeak peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF141PQX 1837575 ENCODE Processing Pipeline 104ba1161d7bf1982e5daccbc5b5b390 https://www.encodeproject.org/files/ENCFF816ZXB/@@download/ENCFF816ZXB.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF833EAK bigWig signal p-value ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF580YCN, ENCFF677RAC 1154926700 ENCODE Processing Pipeline a1a578854c4528381346d73d72a9008f https://www.encodeproject.org/files/ENCFF833EAK/@@download/ENCFF833EAK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF203RNU bigWig signal p-value ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF871PQI 1209565299 ENCODE Processing Pipeline 82a2f8055dbe3dec6260f955b289fbf0 https://www.encodeproject.org/files/ENCFF203RNU/@@download/ENCFF203RNU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF472BDD bigWig signal p-value ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF580YCN, ENCFF677RAC, ENCFF871PQI 1673773259 ENCODE Processing Pipeline 0c437ea4e753e5d96abfa2d0a4151833 https://www.encodeproject.org/files/ENCFF472BDD/@@download/ENCFF472BDD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF958LPR bigWig fold change over control ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF580YCN, ENCFF677RAC 1229871275 ENCODE Processing Pipeline 4b6afb9c06225bb392881e60c8f0a6f6 https://www.encodeproject.org/files/ENCFF958LPR/@@download/ENCFF958LPR.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF259AJN bigWig fold change over control ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF871PQI 1359724834 ENCODE Processing Pipeline 4b13c84bc1e02afb1401b4aea5ee5a9c https://www.encodeproject.org/files/ENCFF259AJN/@@download/ENCFF259AJN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF886OPQ bigWig fold change over control ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF580YCN, ENCFF677RAC, ENCFF871PQI 1764023759 ENCODE Processing Pipeline a3a85448d0f96ed21775de1d162fd93e https://www.encodeproject.org/files/ENCFF886OPQ/@@download/ENCFF886OPQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF556VVF bed narrowPeak replicated peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF141PQX, ENCFF188JWA, ENCFF780MKQ 397965 ENCODE Processing Pipeline 58c9c9fd79fffe3beed6a66478518fd3 https://www.encodeproject.org/files/ENCFF556VVF/@@download/ENCFF556VVF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF208CUM bigBed narrowPeak replicated peaks ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF556VVF 950599 ENCODE Processing Pipeline 048da2f6d6c385e7da8c15436375eb19 https://www.encodeproject.org/files/ENCFF208CUM/@@download/ENCFF208CUM.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF185WHY fastq reads ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1182731537 Bing Ren, UCSD 00bd5f7212e5e7c0d33fc600be69fd4f SRA:SRR4235730 https://www.encodeproject.org/files/ENCFF185WHY/@@download/ENCFF185WHY.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released moderate library complexity, mild to moderate bottlenecking ENCFF837FLC fastq reads ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2427846275 Bing Ren, UCSD 7e71665c8e40d3aefd39bab9992ab4a9 SRA:SRR4235729 https://www.encodeproject.org/files/ENCFF837FLC/@@download/ENCFF837FLC.fastq.gz Illumina HiSeq 4000 /files/ENCFF366TEJ/ released moderate library complexity, mild to moderate bottlenecking ENCFF293MTH bam alignments ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF185WHY 1043471739 ENCODE Processing Pipeline fb529317cb69628929876cb2d42fa2ff https://www.encodeproject.org/files/ENCFF293MTH/@@download/ENCFF293MTH.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF926YCV bam unfiltered alignments ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF185WHY 1454140832 ENCODE Processing Pipeline 2af6e4b5edda73614a4bf80847a98ac4 https://www.encodeproject.org/files/ENCFF926YCV/@@download/ENCFF926YCV.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF300ZRU bam unfiltered alignments ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF837FLC 2817868431 ENCODE Processing Pipeline 7910ec37dce2482364362677a976d10e https://www.encodeproject.org/files/ENCFF300ZRU/@@download/ENCFF300ZRU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF251WXG bam alignments ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF837FLC 1741518671 ENCODE Processing Pipeline 647e775a7702f95e649f99d67ba86356 https://www.encodeproject.org/files/ENCFF251WXG/@@download/ENCFF251WXG.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF996AUO bed narrowPeak peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF251WXG, ENCFF344GQQ 967634 ENCODE Processing Pipeline 1356cfa4f79fd93fb4a4650fe7c21787 https://www.encodeproject.org/files/ENCFF996AUO/@@download/ENCFF996AUO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF521HCI bigBed narrowPeak peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF748QEA 2126941 ENCODE Processing Pipeline 396847cf1190d953620b15832722fd04 https://www.encodeproject.org/files/ENCFF521HCI/@@download/ENCFF521HCI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF681TKD bigBed narrowPeak peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF755ZWX 2597063 ENCODE Processing Pipeline 6f078e6065823cdce10fc4a8278c5441 https://www.encodeproject.org/files/ENCFF681TKD/@@download/ENCFF681TKD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF748QEA bed narrowPeak peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF293MTH, ENCFF344GQQ 681824 ENCODE Processing Pipeline 7e3b23c7275f9f8ec22bd25338ab87bf https://www.encodeproject.org/files/ENCFF748QEA/@@download/ENCFF748QEA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF755ZWX bed narrowPeak peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF181QWR, ENCFF251WXG, ENCFF293MTH, ENCFF344GQQ 892344 ENCODE Processing Pipeline f1188192ff4d818937c042466899d553 https://www.encodeproject.org/files/ENCFF755ZWX/@@download/ENCFF755ZWX.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF613VAU bigBed narrowPeak peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF996AUO 2815014 ENCODE Processing Pipeline 1a250669e07a0fb2c12acc60aba48da9 https://www.encodeproject.org/files/ENCFF613VAU/@@download/ENCFF613VAU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF801MQR bigWig signal p-value ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF293MTH, ENCFF344GQQ 717323677 ENCODE Processing Pipeline bfa53bc9daa021b1411279d3e918b7db https://www.encodeproject.org/files/ENCFF801MQR/@@download/ENCFF801MQR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF877GMJ bigWig signal p-value ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF251WXG, ENCFF344GQQ 931227772 ENCODE Processing Pipeline b79b677f8d3d893351ad7117d5109a89 https://www.encodeproject.org/files/ENCFF877GMJ/@@download/ENCFF877GMJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF696BZG bigWig fold change over control ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF251WXG, ENCFF344GQQ 885016765 ENCODE Processing Pipeline 6e7dd56f617668ecf8e2ca98b0f93b74 https://www.encodeproject.org/files/ENCFF696BZG/@@download/ENCFF696BZG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF731VKN bigWig fold change over control ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF293MTH, ENCFF344GQQ 584741651 ENCODE Processing Pipeline 97a04bdf4492550577914eb23ab0db44 https://www.encodeproject.org/files/ENCFF731VKN/@@download/ENCFF731VKN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF837WPH bigWig signal p-value ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF181QWR, ENCFF251WXG, ENCFF293MTH, ENCFF344GQQ 1057946494 ENCODE Processing Pipeline 10937acecfd7ddf2e8be2f21c1c37948 https://www.encodeproject.org/files/ENCFF837WPH/@@download/ENCFF837WPH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF432UHX bed narrowPeak replicated peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF748QEA, ENCFF755ZWX, ENCFF996AUO 841989 ENCODE Processing Pipeline ad0cb5f08a2c5d68387559c97082fc0f https://www.encodeproject.org/files/ENCFF432UHX/@@download/ENCFF432UHX.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF026PRW bigBed narrowPeak replicated peaks ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF432UHX 1929872 ENCODE Processing Pipeline 0dea71e0142440bd3469cb034a821c14 https://www.encodeproject.org/files/ENCFF026PRW/@@download/ENCFF026PRW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF863DGY bigWig fold change over control ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF181QWR, ENCFF251WXG, ENCFF293MTH, ENCFF344GQQ 1057916586 ENCODE Processing Pipeline bb65ce78a1a39e51a179c14f80cfe981 https://www.encodeproject.org/files/ENCFF863DGY/@@download/ENCFF863DGY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF002ESS fastq reads ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 721991975 Bing Ren, UCSD d24bd02ee6feddfea066713c15e5b2fd SRA:SRR3652216 https://www.encodeproject.org/files/ENCFF002ESS/@@download/ENCFF002ESS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXZ/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF002ESV fastq reads ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 2452840523 Bing Ren, UCSD 675de685fdbfa85ee044dd5cb4679eb4 SRA:SRR3652218 https://www.encodeproject.org/files/ENCFF002ESV/@@download/ENCFF002ESV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXX/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF279VPQ bam alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESV, ENCFF806TVZ 1993055931 ENCODE Processing Pipeline 8e2e2a45f12f59de29533e7b2ea1b5ed https://www.encodeproject.org/files/ENCFF279VPQ/@@download/ENCFF279VPQ.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF211QPE fastq reads ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 1512631726 Bing Ren, UCSD 29b697c02a8abeab0709cfb33602f5be SRA:SRR3652217 https://www.encodeproject.org/files/ENCFF211QPE/@@download/ENCFF211QPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXZ/ released mixed read lengths, low read length, inconsistent control read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF253IUT bam alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESS, ENCFF211QPE, ENCFF806TVZ 2004578962 ENCODE Processing Pipeline 55d4499331d13cba5ec5b4e5bc9eb062 https://www.encodeproject.org/files/ENCFF253IUT/@@download/ENCFF253IUT.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF337XEF bed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF253IUT, ENCFF527LXR 1388122 ENCODE Processing Pipeline bd6cf31fcd44c0528dfaf1e68aed38eb https://www.encodeproject.org/files/ENCFF337XEF/@@download/ENCFF337XEF.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF135CJZ bigBed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF117LYM 4919976 ENCODE Processing Pipeline 1bce83a16e190b4493c656ee940cd468 https://www.encodeproject.org/files/ENCFF135CJZ/@@download/ENCFF135CJZ.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF331WUS bigBed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF337XEF 3796302 ENCODE Processing Pipeline f9537006199ff2f0cac9ed791bbcf7d0 https://www.encodeproject.org/files/ENCFF331WUS/@@download/ENCFF331WUS.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF980WPQ bigBed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF656ZBT 4081299 ENCODE Processing Pipeline 5004a1281c77cd8d6a248a605c875d3f https://www.encodeproject.org/files/ENCFF980WPQ/@@download/ENCFF980WPQ.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF117LYM bed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF279VPQ, ENCFF527LXR 1862874 ENCODE Processing Pipeline f1d7ce5e0ddd5df440c97a8eb8b4bd1a https://www.encodeproject.org/files/ENCFF117LYM/@@download/ENCFF117LYM.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF656ZBT bed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF253IUT, ENCFF279VPQ, ENCFF527LXR 1540021 ENCODE Processing Pipeline e770e10054e2fc98442684ec9d4dd8f0 https://www.encodeproject.org/files/ENCFF656ZBT/@@download/ENCFF656ZBT.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF801UNU bigWig fold change over control ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF279VPQ, ENCFF527LXR 716326456 ENCODE Processing Pipeline 21eb3172387b80d6d676ae0248018679 https://www.encodeproject.org/files/ENCFF801UNU/@@download/ENCFF801UNU.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF987ZOX bigWig signal p-value ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF279VPQ, ENCFF527LXR 495055169 ENCODE Processing Pipeline 2fd0da1568f4fdc49ce60cf653d4fc70 https://www.encodeproject.org/files/ENCFF987ZOX/@@download/ENCFF987ZOX.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF216NLJ bigWig signal p-value ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF253IUT, ENCFF527LXR 496972472 ENCODE Processing Pipeline f569e51abe984a4619ec5b78522d2eaa https://www.encodeproject.org/files/ENCFF216NLJ/@@download/ENCFF216NLJ.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF012KYF bigWig signal p-value ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF253IUT, ENCFF279VPQ, ENCFF527LXR 482652537 ENCODE Processing Pipeline c31ed1971b3b44ea816d34781db1de5b https://www.encodeproject.org/files/ENCFF012KYF/@@download/ENCFF012KYF.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF943OQC bigWig fold change over control ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF253IUT, ENCFF527LXR 680667161 ENCODE Processing Pipeline 5bdd4ab1a127d80573f204304e30010c https://www.encodeproject.org/files/ENCFF943OQC/@@download/ENCFF943OQC.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF754BKJ bigWig fold change over control ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF253IUT, ENCFF279VPQ, ENCFF527LXR 1121894514 ENCODE Processing Pipeline 9739248f368fc73804aa17030297ba7e https://www.encodeproject.org/files/ENCFF754BKJ/@@download/ENCFF754BKJ.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF491VYV bed narrowPeak replicated peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF117LYM, ENCFF337XEF, ENCFF656ZBT 1677550 ENCODE Processing Pipeline d73f70fc9b2dc0877ef3a5331af7a43e https://www.encodeproject.org/files/ENCFF491VYV/@@download/ENCFF491VYV.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF050CDU bigBed narrowPeak replicated peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF491VYV 3420128 ENCODE Processing Pipeline 294371f13366699450ad5208709eb636 https://www.encodeproject.org/files/ENCFF050CDU/@@download/ENCFF050CDU.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF879VKI bam unfiltered alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESS, ENCFF018NEO, ENCFF211QPE 2432782203 ENCODE Processing Pipeline 47900db6b0c0d6e24cd48cc6c7366f7b https://www.encodeproject.org/files/ENCFF879VKI/@@download/ENCFF879VKI.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF007KSG bam unfiltered alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESV, ENCFF018NEO 3032536421 ENCODE Processing Pipeline 3a3d4912360ed2b8fa1b89a7a678749a https://www.encodeproject.org/files/ENCFF007KSG/@@download/ENCFF007KSG.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF282ONU bam alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESS, ENCFF018NEO, ENCFF211QPE 1679733637 ENCODE Processing Pipeline a90073bba3e92b96dc7b3d307433a88f https://www.encodeproject.org/files/ENCFF282ONU/@@download/ENCFF282ONU.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF539SPH bam alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESV, ENCFF018NEO 1992625981 ENCODE Processing Pipeline 3fd548d645c62cd54cec9f735f71dcc5 https://www.encodeproject.org/files/ENCFF539SPH/@@download/ENCFF539SPH.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF127CBX bed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF282ONU, ENCFF426BAZ 1460934 ENCODE Processing Pipeline d7934d4c08ddf9629f4354869b36ebc1 https://www.encodeproject.org/files/ENCFF127CBX/@@download/ENCFF127CBX.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF301FOI bed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF539SPH 1842077 ENCODE Processing Pipeline 3c8994a61df51ef5981454865cd518c7 https://www.encodeproject.org/files/ENCFF301FOI/@@download/ENCFF301FOI.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF175MQX bed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF282ONU, ENCFF426BAZ, ENCFF539SPH 1593273 ENCODE Processing Pipeline e5880c7f50e30d933f7b5ded7b2ccf44 https://www.encodeproject.org/files/ENCFF175MQX/@@download/ENCFF175MQX.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF352DLN bigBed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF301FOI 4871032 ENCODE Processing Pipeline 79e58be18194a7dc493f17189b7b6f46 https://www.encodeproject.org/files/ENCFF352DLN/@@download/ENCFF352DLN.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF351OTL bigBed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF175MQX 4223785 ENCODE Processing Pipeline 9fe735e78d5033ccd65036986873160b https://www.encodeproject.org/files/ENCFF351OTL/@@download/ENCFF351OTL.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF734HHB bigBed narrowPeak peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF127CBX 3965783 ENCODE Processing Pipeline 57dd215df9a41db49428f80be1dd0ce5 https://www.encodeproject.org/files/ENCFF734HHB/@@download/ENCFF734HHB.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF614GXQ bigWig signal p-value ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF539SPH 497068266 ENCODE Processing Pipeline 0ca2efec8835c0cafea16352f8a8134d https://www.encodeproject.org/files/ENCFF614GXQ/@@download/ENCFF614GXQ.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF046AXT bigWig signal p-value ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF282ONU, ENCFF426BAZ 504584754 ENCODE Processing Pipeline 22ffc232e2cf40ba4084cb17efbc3bf2 https://www.encodeproject.org/files/ENCFF046AXT/@@download/ENCFF046AXT.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF250LOK bigWig signal p-value ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF282ONU, ENCFF426BAZ, ENCFF539SPH 488695977 ENCODE Processing Pipeline d606c3c39bce52aeafecceaa12e1d73a https://www.encodeproject.org/files/ENCFF250LOK/@@download/ENCFF250LOK.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF508ODF bigWig fold change over control ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF539SPH 713562800 ENCODE Processing Pipeline e0e67143b2905146480eb9257b3aed27 https://www.encodeproject.org/files/ENCFF508ODF/@@download/ENCFF508ODF.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF521QBV bigWig fold change over control ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF282ONU, ENCFF426BAZ 669520925 ENCODE Processing Pipeline f11947b997aca4a972851cb12a5830c0 https://www.encodeproject.org/files/ENCFF521QBV/@@download/ENCFF521QBV.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF544BIS bigWig fold change over control ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF282ONU, ENCFF426BAZ, ENCFF539SPH 1105448310 ENCODE Processing Pipeline f63013a3fcc585096b4e7495d19aa95e https://www.encodeproject.org/files/ENCFF544BIS/@@download/ENCFF544BIS.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF317PNJ bed narrowPeak replicated peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF127CBX, ENCFF175MQX, ENCFF301FOI 1733154 ENCODE Processing Pipeline 41ad30febe115b792f11782e966f1daa https://www.encodeproject.org/files/ENCFF317PNJ/@@download/ENCFF317PNJ.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF798LMB bigBed narrowPeak replicated peaks ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF317PNJ 3520970 ENCODE Processing Pipeline 3ec35bc111bd7304b3d0936803d36cdf https://www.encodeproject.org/files/ENCFF798LMB/@@download/ENCFF798LMB.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF496DOX fastq reads ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 796700483 Bing Ren, UCSD 661a3a229607c88801b096933df8936e SRA:SRR4235797 https://www.encodeproject.org/files/ENCFF496DOX/@@download/ENCFF496DOX.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF174LQN fastq reads ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 3280752270 Bing Ren, UCSD d31af96db2698f43ea08fb2f0629aeec SRA:SRR4235798 https://www.encodeproject.org/files/ENCFF174LQN/@@download/ENCFF174LQN.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF566UUW fastq reads ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 3 50 single-ended 840115680 Bing Ren, UCSD fa8267bec308319a083e74a615fa0485 SRA:SRR4235799 https://www.encodeproject.org/files/ENCFF566UUW/@@download/ENCFF566UUW.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF091BUN fastq reads ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2851869524 Bing Ren, UCSD 0c46d26ec476c6746870963a8f971c55 SRA:SRR4235794 https://www.encodeproject.org/files/ENCFF091BUN/@@download/ENCFF091BUN.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF145TFL fastq reads ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 3 50 single-ended 730196896 Bing Ren, UCSD e804ae5b4bcaad1b774bc418b5bccfc8 SRA:SRR4235795 https://www.encodeproject.org/files/ENCFF145TFL/@@download/ENCFF145TFL.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF797GFE fastq reads ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 2 50 single-ended 3740251342 Bing Ren, UCSD 7c0d1bc192289daeec9bc7004fc3de1c SRA:SRR4235796 https://www.encodeproject.org/files/ENCFF797GFE/@@download/ENCFF797GFE.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF308QKX bam unfiltered alignments ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF174LQN, ENCFF496DOX, ENCFF566UUW 5342458513 ENCODE Processing Pipeline a9d469598745c2f9567076d8bfefdb1a https://www.encodeproject.org/files/ENCFF308QKX/@@download/ENCFF308QKX.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF867KIO bam alignments ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF174LQN, ENCFF496DOX, ENCFF566UUW 1517801130 ENCODE Processing Pipeline 34ae5a7b3ee62cd42b8135573999b034 https://www.encodeproject.org/files/ENCFF867KIO/@@download/ENCFF867KIO.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF585UML bam unfiltered alignments ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF091BUN, ENCFF145TFL, ENCFF797GFE 7823877948 ENCODE Processing Pipeline 3373d87bf644c29b73deb70bafccf72c https://www.encodeproject.org/files/ENCFF585UML/@@download/ENCFF585UML.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF582AST bam alignments ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF091BUN, ENCFF145TFL, ENCFF797GFE 2138435720 ENCODE Processing Pipeline 99004831c798c0c4dec3a300da8a9a13 https://www.encodeproject.org/files/ENCFF582AST/@@download/ENCFF582AST.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF536NNN bed narrowPeak peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF531DRS, ENCFF582AST 2023050 ENCODE Processing Pipeline f03038f4a52488d74ab62e1371a4a5aa https://www.encodeproject.org/files/ENCFF536NNN/@@download/ENCFF536NNN.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF599YUN bed narrowPeak peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF531DRS, ENCFF582AST, ENCFF867KIO 2600476 ENCODE Processing Pipeline f55bea1b0ac4f1e45cc4df867a9e1807 https://www.encodeproject.org/files/ENCFF599YUN/@@download/ENCFF599YUN.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF370SSV bigBed narrowPeak peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF371UWK 4488975 ENCODE Processing Pipeline 1e6869b2c3b2eb4ac2b417d910169b47 https://www.encodeproject.org/files/ENCFF370SSV/@@download/ENCFF370SSV.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF371UWK bed narrowPeak peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF867KIO 1858990 ENCODE Processing Pipeline b40ff8a11cd671360de1aca92ca9689d https://www.encodeproject.org/files/ENCFF371UWK/@@download/ENCFF371UWK.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF303WTB bigBed narrowPeak peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF536NNN 4712688 ENCODE Processing Pipeline e11a0929799377b00dad848c74637acb https://www.encodeproject.org/files/ENCFF303WTB/@@download/ENCFF303WTB.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF299QHQ bigWig signal p-value ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF867KIO 608197975 ENCODE Processing Pipeline fac653238fa9f7d46128db5890e27a65 https://www.encodeproject.org/files/ENCFF299QHQ/@@download/ENCFF299QHQ.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF781MVR bigBed narrowPeak peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF599YUN 6052400 ENCODE Processing Pipeline 490e30d877c288bfb00044d644a088c7 https://www.encodeproject.org/files/ENCFF781MVR/@@download/ENCFF781MVR.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF015SHL bigWig signal p-value ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF531DRS, ENCFF582AST 791266874 ENCODE Processing Pipeline 72b9a5e73e9dc3f20cb554c0370a75f5 https://www.encodeproject.org/files/ENCFF015SHL/@@download/ENCFF015SHL.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF935WYG bigWig signal p-value ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF531DRS, ENCFF582AST, ENCFF867KIO 1366086095 ENCODE Processing Pipeline 89a634f4260e1b50e99008fbb25790e5 https://www.encodeproject.org/files/ENCFF935WYG/@@download/ENCFF935WYG.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF972CVT bigWig fold change over control ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF867KIO 709410286 ENCODE Processing Pipeline ef0586b1c2225c9f99f06ea60f8bd71f https://www.encodeproject.org/files/ENCFF972CVT/@@download/ENCFF972CVT.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF416APG bed narrowPeak replicated peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF371UWK, ENCFF536NNN, ENCFF599YUN 1455800 ENCODE Processing Pipeline dc3951364a8be3ae09391b70e8989401 https://www.encodeproject.org/files/ENCFF416APG/@@download/ENCFF416APG.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF718CTV bigWig fold change over control ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF531DRS, ENCFF582AST 921745277 ENCODE Processing Pipeline 2426a7afa1c8bd5afe67e59c6441e0e8 https://www.encodeproject.org/files/ENCFF718CTV/@@download/ENCFF718CTV.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF217MZD bigWig fold change over control ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF531DRS, ENCFF582AST, ENCFF867KIO 1502342267 ENCODE Processing Pipeline 8edcd0f22cc47d14cd3dbb15f9025cc3 https://www.encodeproject.org/files/ENCFF217MZD/@@download/ENCFF217MZD.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF008AFA bigBed narrowPeak replicated peaks ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF416APG 2743683 ENCODE Processing Pipeline 5f4dc94c799d80676c4ad2bab0d325db https://www.encodeproject.org/files/ENCFF008AFA/@@download/ENCFF008AFA.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF565YDK fastq reads ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 50 single-ended 1865053792 Bing Ren, UCSD 1d0922c8974c79902a9942491234417a SRA:SRR3652229 https://www.encodeproject.org/files/ENCFF565YDK/@@download/ENCFF565YDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF226JKY fastq reads ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 2 50 single-ended 314525534 Bing Ren, UCSD 55d89fe9be101b24d3a80edd9dd221bb SRA:SRR3652230 https://www.encodeproject.org/files/ENCFF226JKY/@@download/ENCFF226JKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF452BON fastq reads ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 50 single-ended 1882083026 Bing Ren, UCSD 90c9f17eec70e5108774608288f8f3c7 SRA:SRR3652227 https://www.encodeproject.org/files/ENCFF452BON/@@download/ENCFF452BON.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF168HAA fastq reads ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 2 50 single-ended 153967462 Bing Ren, UCSD d8c3f84884a5acdab487c87ffa6bc2d4 SRA:SRR3652228 https://www.encodeproject.org/files/ENCFF168HAA/@@download/ENCFF168HAA.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF907DVF bam alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF226JKY, ENCFF565YDK, ENCFF806TVZ 1246389519 ENCODE Processing Pipeline 2c13f69c05cd2d44e0a198097567a224 https://www.encodeproject.org/files/ENCFF907DVF/@@download/ENCFF907DVF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF810DDY bam alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF168HAA, ENCFF452BON, ENCFF806TVZ 1078477608 ENCODE Processing Pipeline c2b80742102f929815eafbbbf1758d11 https://www.encodeproject.org/files/ENCFF810DDY/@@download/ENCFF810DDY.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF619IMZ bed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF476GUX, ENCFF592WTG, ENCFF810DDY, ENCFF907DVF 956670 ENCODE Processing Pipeline f6edee8d86936e3605f20a28467ee0f7 https://www.encodeproject.org/files/ENCFF619IMZ/@@download/ENCFF619IMZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF438MLX bed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF476GUX, ENCFF810DDY 558290 ENCODE Processing Pipeline c21e25955a1eb58bdac9db3272d336e1 https://www.encodeproject.org/files/ENCFF438MLX/@@download/ENCFF438MLX.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF135VRR bigBed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF438MLX 1326516 ENCODE Processing Pipeline ed92496f31d1ffea8e06a6b7c84e09b8 https://www.encodeproject.org/files/ENCFF135VRR/@@download/ENCFF135VRR.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF449NUE bigBed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF619IMZ 2038983 ENCODE Processing Pipeline 7c59bf0f305ac0c86171045e302e9245 https://www.encodeproject.org/files/ENCFF449NUE/@@download/ENCFF449NUE.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF835ZJF bigBed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF837VTI 1166462 ENCODE Processing Pipeline 2dec4723ef21e534d59534885705f8f6 https://www.encodeproject.org/files/ENCFF835ZJF/@@download/ENCFF835ZJF.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF671HZK bigWig signal p-value ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF592WTG, ENCFF907DVF 535376355 ENCODE Processing Pipeline 0a3f48ced597b5589b5cf3f96286cf93 https://www.encodeproject.org/files/ENCFF671HZK/@@download/ENCFF671HZK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF463YFI bigWig signal p-value ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF476GUX, ENCFF810DDY 457210874 ENCODE Processing Pipeline 8e3f0b95d11ed6cbd0750974db08aa55 https://www.encodeproject.org/files/ENCFF463YFI/@@download/ENCFF463YFI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF837VTI bed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF592WTG, ENCFF907DVF 614758 ENCODE Processing Pipeline e6eee9ade8cc7d969c96d960edd93701 https://www.encodeproject.org/files/ENCFF837VTI/@@download/ENCFF837VTI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF257LAG bigWig signal p-value ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF476GUX, ENCFF592WTG, ENCFF810DDY, ENCFF907DVF 911609190 ENCODE Processing Pipeline 7b8b36de650f1e1cd933a99e6516c2eb https://www.encodeproject.org/files/ENCFF257LAG/@@download/ENCFF257LAG.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF681JCF bigWig fold change over control ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF592WTG, ENCFF907DVF 551317896 ENCODE Processing Pipeline 36a28060c4093cdb6586902e6ba48e31 https://www.encodeproject.org/files/ENCFF681JCF/@@download/ENCFF681JCF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF103OQO bigWig fold change over control ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF476GUX, ENCFF810DDY 440531430 ENCODE Processing Pipeline b19318c5903507809db7fcdd916a2a70 https://www.encodeproject.org/files/ENCFF103OQO/@@download/ENCFF103OQO.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF565KOM bigWig fold change over control ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF476GUX, ENCFF592WTG, ENCFF810DDY, ENCFF907DVF 922411217 ENCODE Processing Pipeline 1675d0eda5793c4012f685637d12f306 https://www.encodeproject.org/files/ENCFF565KOM/@@download/ENCFF565KOM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF228QOK bigBed narrowPeak replicated peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF099XYZ 608885 ENCODE Processing Pipeline bc6721a67447082522e17b070d6706c1 https://www.encodeproject.org/files/ENCFF228QOK/@@download/ENCFF228QOK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF099XYZ bed narrowPeak replicated peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF438MLX, ENCFF619IMZ, ENCFF837VTI 259346 ENCODE Processing Pipeline 6e6822a10b9b0cbb5b81eec4a0436261 https://www.encodeproject.org/files/ENCFF099XYZ/@@download/ENCFF099XYZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF087TTN bam unfiltered alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF226JKY, ENCFF565YDK 2647066952 ENCODE Processing Pipeline 3d9454efd13807f3433ae0ff5c8ca921 https://www.encodeproject.org/files/ENCFF087TTN/@@download/ENCFF087TTN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF157AWD bam unfiltered alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF168HAA, ENCFF452BON 2471140978 ENCODE Processing Pipeline 42751a6c0b2229a6c7728ccd88475e99 https://www.encodeproject.org/files/ENCFF157AWD/@@download/ENCFF157AWD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF148BAU bam alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF226JKY, ENCFF565YDK 1245682985 ENCODE Processing Pipeline 11fb8200d491a255addb76080b977d80 https://www.encodeproject.org/files/ENCFF148BAU/@@download/ENCFF148BAU.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF110BCP bam alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF168HAA, ENCFF452BON 1077834255 ENCODE Processing Pipeline a78c24ac9586d9482d6b76314b167ea0 https://www.encodeproject.org/files/ENCFF110BCP/@@download/ENCFF110BCP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF458KFV bed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF148BAU, ENCFF627RIT 587149 ENCODE Processing Pipeline 00079efed9a7ce15bcd8f21e6091ca3f https://www.encodeproject.org/files/ENCFF458KFV/@@download/ENCFF458KFV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF675TID bed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF110BCP, ENCFF285XPR 534857 ENCODE Processing Pipeline 757a5ffee07059c6a5f6e3ce6b526764 https://www.encodeproject.org/files/ENCFF675TID/@@download/ENCFF675TID.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF742QJL bed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF110BCP, ENCFF148BAU, ENCFF285XPR, ENCFF627RIT 975746 ENCODE Processing Pipeline 66b76e0fe416e77f802e15556e3a9eac https://www.encodeproject.org/files/ENCFF742QJL/@@download/ENCFF742QJL.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF308EKE bigBed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF458KFV 1120642 ENCODE Processing Pipeline 12316c03889858a04909840301c4a48d https://www.encodeproject.org/files/ENCFF308EKE/@@download/ENCFF308EKE.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF111IWV bigBed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF675TID 1282648 ENCODE Processing Pipeline b12e6f745b39e6f931ac5cee0433dd8d https://www.encodeproject.org/files/ENCFF111IWV/@@download/ENCFF111IWV.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF389XMR bigBed narrowPeak peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF742QJL 2081121 ENCODE Processing Pipeline c8d165170336d48e7cdbb72d45624d7d https://www.encodeproject.org/files/ENCFF389XMR/@@download/ENCFF389XMR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF260HUB bigWig signal p-value ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF148BAU, ENCFF627RIT 494620635 ENCODE Processing Pipeline 76ef2713c0f004006c24421109938887 https://www.encodeproject.org/files/ENCFF260HUB/@@download/ENCFF260HUB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF946KTJ bigWig signal p-value ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF110BCP, ENCFF285XPR 428531480 ENCODE Processing Pipeline f297719051655cb2ce7200835c61facf https://www.encodeproject.org/files/ENCFF946KTJ/@@download/ENCFF946KTJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF117WUT bigWig signal p-value ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF110BCP, ENCFF148BAU, ENCFF285XPR, ENCFF627RIT 1011443223 ENCODE Processing Pipeline b5f8f7a54a8281750108e49b7d63ad51 https://www.encodeproject.org/files/ENCFF117WUT/@@download/ENCFF117WUT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF095MJJ bigWig fold change over control ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF148BAU, ENCFF627RIT 527910875 ENCODE Processing Pipeline f6929c7f1c1275d0c2e7f0a265f0ca94 https://www.encodeproject.org/files/ENCFF095MJJ/@@download/ENCFF095MJJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF488WZN bigWig fold change over control ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF110BCP, ENCFF285XPR 478334418 ENCODE Processing Pipeline 997c65ddc0fb2488e1b02ee255c58b65 https://www.encodeproject.org/files/ENCFF488WZN/@@download/ENCFF488WZN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF209XEZ bigWig fold change over control ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF110BCP, ENCFF148BAU, ENCFF285XPR, ENCFF627RIT 1009137570 ENCODE Processing Pipeline 5186cb634b97ef983bccdf55e25b2504 https://www.encodeproject.org/files/ENCFF209XEZ/@@download/ENCFF209XEZ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF700ZGY bed narrowPeak replicated peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF458KFV, ENCFF675TID, ENCFF742QJL 261572 ENCODE Processing Pipeline c97a88c3343bf79c9ffb52047d2077a4 https://www.encodeproject.org/files/ENCFF700ZGY/@@download/ENCFF700ZGY.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF451QID bigBed narrowPeak replicated peaks ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF700ZGY 614943 ENCODE Processing Pipeline a3ef19343654088de8de8e42a1b0e547 https://www.encodeproject.org/files/ENCFF451QID/@@download/ENCFF451QID.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF603WTI fastq reads ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 2127579070 Bing Ren, UCSD f3b81100b83ca8baccd62052ea9ba7cc SRA:SRR4235609 https://www.encodeproject.org/files/ENCFF603WTI/@@download/ENCFF603WTI.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF987CWK fastq reads ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2287996960 Bing Ren, UCSD 71c922d54f31ca97d6e4eaf58dfcf213 SRA:SRR4235610 https://www.encodeproject.org/files/ENCFF987CWK/@@download/ENCFF987CWK.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF018NGQ fastq reads ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2676762414 Bing Ren, UCSD c11a58197ca1eba78060636b9da06b51 SRA:SRR4235608 https://www.encodeproject.org/files/ENCFF018NGQ/@@download/ENCFF018NGQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF533UEL bam unfiltered alignments ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF018NGQ 3294538813 ENCODE Processing Pipeline 61c65f60136c7cee45ce3071e4b8c52d https://www.encodeproject.org/files/ENCFF533UEL/@@download/ENCFF533UEL.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF773QLL bam unfiltered alignments ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF603WTI, ENCFF987CWK 5225753441 ENCODE Processing Pipeline e3465127eb6fe25a26f23f3aeefbf6ff https://www.encodeproject.org/files/ENCFF773QLL/@@download/ENCFF773QLL.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF039UQO bam alignments ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF018NGQ 2138843722 ENCODE Processing Pipeline 0fd3ef9b6345f79dd7dfd05fb007364d https://www.encodeproject.org/files/ENCFF039UQO/@@download/ENCFF039UQO.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF407ATI bam alignments ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF603WTI, ENCFF987CWK 2659531396 ENCODE Processing Pipeline 82847a2a5beb8095282c68c00f48e347 https://www.encodeproject.org/files/ENCFF407ATI/@@download/ENCFF407ATI.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF612RRI bed narrowPeak peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF407ATI, ENCFF531DRS 5064447 ENCODE Processing Pipeline 5b1b8f7a40eb9adabea21e8156a71e6f https://www.encodeproject.org/files/ENCFF612RRI/@@download/ENCFF612RRI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF048HTS bed narrowPeak peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF039UQO, ENCFF280XYK, ENCFF407ATI, ENCFF531DRS 4127251 ENCODE Processing Pipeline 7f2f660972a6bd8002203054ae02538d https://www.encodeproject.org/files/ENCFF048HTS/@@download/ENCFF048HTS.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF178RHU bigBed narrowPeak peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF612RRI 10602868 ENCODE Processing Pipeline cb1d1b2679f53e27701db37aea15e48a https://www.encodeproject.org/files/ENCFF178RHU/@@download/ENCFF178RHU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF922RJO bigBed narrowPeak peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF048HTS 8572908 ENCODE Processing Pipeline 2f6ba3acc9ecf0fd210a25f790115ac8 https://www.encodeproject.org/files/ENCFF922RJO/@@download/ENCFF922RJO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF045KIJ bed narrowPeak peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF039UQO, ENCFF531DRS 2979470 ENCODE Processing Pipeline 5351429aebd820549e00708832138547 https://www.encodeproject.org/files/ENCFF045KIJ/@@download/ENCFF045KIJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF706EUG bigBed narrowPeak peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF045KIJ 6204582 ENCODE Processing Pipeline 751326276e5d97f23f520c0ecdee472d https://www.encodeproject.org/files/ENCFF706EUG/@@download/ENCFF706EUG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF874WPL bigWig signal p-value ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF407ATI, ENCFF531DRS 1265704113 ENCODE Processing Pipeline 19d6fa14645754f9dae2925c173b7ce1 https://www.encodeproject.org/files/ENCFF874WPL/@@download/ENCFF874WPL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF262BUB bigWig signal p-value ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF039UQO, ENCFF280XYK, ENCFF407ATI, ENCFF531DRS 1623527974 ENCODE Processing Pipeline 1b69adf6d05ace9cbeab7876e99fdbc1 https://www.encodeproject.org/files/ENCFF262BUB/@@download/ENCFF262BUB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF415XWX bigWig signal p-value ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF039UQO, ENCFF531DRS 825532604 ENCODE Processing Pipeline 13b48ffed8e901319c6577ae8612e266 https://www.encodeproject.org/files/ENCFF415XWX/@@download/ENCFF415XWX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF390EUI bigWig fold change over control ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF407ATI, ENCFF531DRS 1173348728 ENCODE Processing Pipeline 83f466367d5387f352ccb2bb5bb2305f https://www.encodeproject.org/files/ENCFF390EUI/@@download/ENCFF390EUI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF261HFF bigWig fold change over control ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF039UQO, ENCFF531DRS 823362388 ENCODE Processing Pipeline b8f0f00274b67486fecb536eaf54e061 https://www.encodeproject.org/files/ENCFF261HFF/@@download/ENCFF261HFF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF297OQP bed narrowPeak replicated peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF045KIJ, ENCFF048HTS, ENCFF612RRI 3708117 ENCODE Processing Pipeline aaa9c2e4401d5f1283ccb5bfbb9fc8f0 https://www.encodeproject.org/files/ENCFF297OQP/@@download/ENCFF297OQP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF449MXR bigBed narrowPeak replicated peaks ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF297OQP 6110561 ENCODE Processing Pipeline efd4a6e6dcabc5bc0f4e85b0a1d97d6e https://www.encodeproject.org/files/ENCFF449MXR/@@download/ENCFF449MXR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF918CGY bigWig fold change over control ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF039UQO, ENCFF280XYK, ENCFF407ATI, ENCFF531DRS 1617454047 ENCODE Processing Pipeline 97e3cca98a1dac4c34fe0c2ed37cda55 https://www.encodeproject.org/files/ENCFF918CGY/@@download/ENCFF918CGY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF538KES fastq reads ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1212827134 Bing Ren, UCSD c9bec3ac71cefd86e393648edfacd9b3 SRA:SRR3651707 https://www.encodeproject.org/files/ENCFF538KES/@@download/ENCFF538KES.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length insufficient read depth, control insufficient read depth ENCFF443RTP fastq reads ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1447153022 Bing Ren, UCSD 28235cfb78ca95b13eca194ad86a6229 SRA:SRR3651708 https://www.encodeproject.org/files/ENCFF443RTP/@@download/ENCFF443RTP.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length insufficient read depth, control insufficient read depth ENCFF034XZH bam alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF538KES, ENCFF806TVZ 1189345049 ENCODE Processing Pipeline 9be6f65630d6458c6dff91ab99ac6c7c https://www.encodeproject.org/files/ENCFF034XZH/@@download/ENCFF034XZH.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF998JCW bam alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF443RTP, ENCFF806TVZ 1371964414 ENCODE Processing Pipeline b9dd94905dabb7ab88305cb31fe600cd https://www.encodeproject.org/files/ENCFF998JCW/@@download/ENCFF998JCW.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF166MQH bed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF034XZH, ENCFF562EMV, ENCFF623BMA 2245905 ENCODE Processing Pipeline 8689786e515c1c10d41affba39f32ca9 https://www.encodeproject.org/files/ENCFF166MQH/@@download/ENCFF166MQH.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF900GGU bigBed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF776QYG 5052822 ENCODE Processing Pipeline 8a374b861b0a3457244e968ed5b55481 https://www.encodeproject.org/files/ENCFF900GGU/@@download/ENCFF900GGU.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF045UTW bed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF998JCW 2063233 ENCODE Processing Pipeline 5b716478e6f08c6115e952a960435921 https://www.encodeproject.org/files/ENCFF045UTW/@@download/ENCFF045UTW.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF878AGW bigBed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF166MQH 5055165 ENCODE Processing Pipeline dd49bfe9bb4dcfc7db33c87763ac0464 https://www.encodeproject.org/files/ENCFF878AGW/@@download/ENCFF878AGW.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF776QYG bed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF034XZH, ENCFF562EMV, ENCFF623BMA, ENCFF998JCW 1759899 ENCODE Processing Pipeline d74fbc630b4aa81f79be6f6e00e0f362 https://www.encodeproject.org/files/ENCFF776QYG/@@download/ENCFF776QYG.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF440YNQ bigBed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF045UTW 5871678 ENCODE Processing Pipeline b60d15b41f7885caa402ef06624f9634 https://www.encodeproject.org/files/ENCFF440YNQ/@@download/ENCFF440YNQ.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF778ZGU bigWig signal p-value ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF034XZH, ENCFF562EMV, ENCFF623BMA 482955443 ENCODE Processing Pipeline fa97d7fa6622a7b6d5649a241da2941f https://www.encodeproject.org/files/ENCFF778ZGU/@@download/ENCFF778ZGU.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF990DBK bigWig signal p-value ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF034XZH, ENCFF562EMV, ENCFF623BMA, ENCFF998JCW 471068227 ENCODE Processing Pipeline 8f32706359cb5a7f63b52c17a1ed4da1 https://www.encodeproject.org/files/ENCFF990DBK/@@download/ENCFF990DBK.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF510IGW bigWig fold change over control ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF034XZH, ENCFF562EMV, ENCFF623BMA 481702931 ENCODE Processing Pipeline 168780ef9a0a664c19ec078d3bc1f93b https://www.encodeproject.org/files/ENCFF510IGW/@@download/ENCFF510IGW.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF749WJI bigWig signal p-value ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF998JCW 496125709 ENCODE Processing Pipeline 7db197d080dfd883f112555b292acac4 https://www.encodeproject.org/files/ENCFF749WJI/@@download/ENCFF749WJI.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF633EIG bigWig fold change over control ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF998JCW 600280038 ENCODE Processing Pipeline a4d1f0d8ebd8d6d35489aab817496178 https://www.encodeproject.org/files/ENCFF633EIG/@@download/ENCFF633EIG.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF125OPL bigWig fold change over control ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF034XZH, ENCFF562EMV, ENCFF623BMA, ENCFF998JCW 881146504 ENCODE Processing Pipeline 5d21e5a7775e341898fa7ef11fb55780 https://www.encodeproject.org/files/ENCFF125OPL/@@download/ENCFF125OPL.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF011VFX bed narrowPeak replicated peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF045UTW, ENCFF166MQH, ENCFF776QYG 1865223 ENCODE Processing Pipeline 1bdf9ba95887020ce680f64a8be738a9 https://www.encodeproject.org/files/ENCFF011VFX/@@download/ENCFF011VFX.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF161EEN bigBed narrowPeak replicated peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF011VFX 4318127 ENCODE Processing Pipeline db0d12db62b7c06a0ad7145434255939 https://www.encodeproject.org/files/ENCFF161EEN/@@download/ENCFF161EEN.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF445BJR bam unfiltered alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF443RTP 1874954250 ENCODE Processing Pipeline b3556fdf5e9071d20be72bb9306877cb https://www.encodeproject.org/files/ENCFF445BJR/@@download/ENCFF445BJR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF586LES bam unfiltered alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF538KES 1578085572 ENCODE Processing Pipeline 9ed943ae84dc6a07f803797f6d8560e7 https://www.encodeproject.org/files/ENCFF586LES/@@download/ENCFF586LES.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF025FVF bam alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF443RTP 1371725568 ENCODE Processing Pipeline d242ef23de7b4d39dc72b3023fb8ca15 https://www.encodeproject.org/files/ENCFF025FVF/@@download/ENCFF025FVF.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF052DTO bam alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF538KES 1189116067 ENCODE Processing Pipeline 204479570c47ff6313aed588283c7364 https://www.encodeproject.org/files/ENCFF052DTO/@@download/ENCFF052DTO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF220QEK bed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052DTO, ENCFF903NWQ, ENCFF995XOU 2227380 ENCODE Processing Pipeline 93786b1def911f2d775d872a7c0ae3ce https://www.encodeproject.org/files/ENCFF220QEK/@@download/ENCFF220QEK.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF708PMS bed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025FVF, ENCFF903NWQ 1006152 ENCODE Processing Pipeline 352972ec628120d8d7a8da064f1da21b https://www.encodeproject.org/files/ENCFF708PMS/@@download/ENCFF708PMS.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF264KOE bigBed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF220QEK 5013550 ENCODE Processing Pipeline b595c7251e191d43fe5e54c13f70417a https://www.encodeproject.org/files/ENCFF264KOE/@@download/ENCFF264KOE.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF646JLQ bed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025FVF, ENCFF052DTO, ENCFF903NWQ, ENCFF995XOU 1761270 ENCODE Processing Pipeline 8aa846e7e850e2d2cd792b1ad020ccaf https://www.encodeproject.org/files/ENCFF646JLQ/@@download/ENCFF646JLQ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF934VUV bigBed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF708PMS 2453019 ENCODE Processing Pipeline d14103041029a86ff6cae1bf12ef6d02 https://www.encodeproject.org/files/ENCFF934VUV/@@download/ENCFF934VUV.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF799DDU bigBed narrowPeak peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF646JLQ 5050743 ENCODE Processing Pipeline b207c882107bd8f6d306a390e6a3ee17 https://www.encodeproject.org/files/ENCFF799DDU/@@download/ENCFF799DDU.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF766IXY bigWig signal p-value ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052DTO, ENCFF903NWQ, ENCFF995XOU 485321801 ENCODE Processing Pipeline da0cf3c93acf8879240c7850fba3d321 https://www.encodeproject.org/files/ENCFF766IXY/@@download/ENCFF766IXY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF600KSF bigWig signal p-value ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025FVF, ENCFF903NWQ 222689042 ENCODE Processing Pipeline 2f92d0f4f98724544ea4a536fa1187cc https://www.encodeproject.org/files/ENCFF600KSF/@@download/ENCFF600KSF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF736JDI bigWig signal p-value ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025FVF, ENCFF052DTO, ENCFF903NWQ, ENCFF995XOU 470854209 ENCODE Processing Pipeline f4e9c0deed12a96d03cc66072525eea4 https://www.encodeproject.org/files/ENCFF736JDI/@@download/ENCFF736JDI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF512IPE bigWig fold change over control ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052DTO, ENCFF903NWQ, ENCFF995XOU 484721861 ENCODE Processing Pipeline ee3045655e67a1ec8574b9fdc2a1bbc9 https://www.encodeproject.org/files/ENCFF512IPE/@@download/ENCFF512IPE.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF311DXM bigWig fold change over control ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025FVF, ENCFF903NWQ 491528932 ENCODE Processing Pipeline a61debb5e8e5ac7ec2733c95e8cb4f23 https://www.encodeproject.org/files/ENCFF311DXM/@@download/ENCFF311DXM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF667NCZ bigWig fold change over control ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025FVF, ENCFF052DTO, ENCFF903NWQ, ENCFF995XOU 875558370 ENCODE Processing Pipeline 4832dcacae39830859268b2bae788fb3 https://www.encodeproject.org/files/ENCFF667NCZ/@@download/ENCFF667NCZ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF961WJN bed narrowPeak replicated peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF220QEK, ENCFF646JLQ, ENCFF708PMS 1642854 ENCODE Processing Pipeline b5af43b91483b16384f1b7faaedc9009 https://www.encodeproject.org/files/ENCFF961WJN/@@download/ENCFF961WJN.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF919VWP bigBed narrowPeak replicated peaks ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF961WJN 3870908 ENCODE Processing Pipeline 73d42a42938ea2d198d8161fd7667a49 https://www.encodeproject.org/files/ENCFF919VWP/@@download/ENCFF919VWP.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF916TDC fastq reads ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2722958474 Bing Ren, UCSD f00682de493f9b84b0342d0e1b2e59e4 SRA:SRR4235742 https://www.encodeproject.org/files/ENCFF916TDC/@@download/ENCFF916TDC.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released moderate library complexity, mild to moderate bottlenecking ENCFF612XSF fastq reads ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2754419585 Bing Ren, UCSD b0af3e908c87c8510c7c97243f32b73a SRA:SRR4235741 https://www.encodeproject.org/files/ENCFF612XSF/@@download/ENCFF612XSF.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released moderate library complexity, mild to moderate bottlenecking ENCFF380OUJ bam unfiltered alignments ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF916TDC 3388747469 ENCODE Processing Pipeline bebd9db1ae5b9b6ac8627e04bc8ab2e6 https://www.encodeproject.org/files/ENCFF380OUJ/@@download/ENCFF380OUJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF479RKK bam unfiltered alignments ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF612XSF 3387684858 ENCODE Processing Pipeline d84f581a6be85207cebee6777ce32c93 https://www.encodeproject.org/files/ENCFF479RKK/@@download/ENCFF479RKK.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF547GUP bam alignments ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF612XSF 2220887323 ENCODE Processing Pipeline a366526e193847835916e44dcac079b0 https://www.encodeproject.org/files/ENCFF547GUP/@@download/ENCFF547GUP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF662MMA bam alignments ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF916TDC 2327905168 ENCODE Processing Pipeline c35e506c85f0544da49ba77ae23c36b8 https://www.encodeproject.org/files/ENCFF662MMA/@@download/ENCFF662MMA.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF851AOI bed narrowPeak peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF547GUP 4115014 ENCODE Processing Pipeline 83d4740dd0ab64b9f13a715b3a355edf https://www.encodeproject.org/files/ENCFF851AOI/@@download/ENCFF851AOI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF858SYM bigBed narrowPeak peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF738VQW 9850677 ENCODE Processing Pipeline 77ae71a37c118354c8d346c8cf16b9c8 https://www.encodeproject.org/files/ENCFF858SYM/@@download/ENCFF858SYM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF270WPW bigBed narrowPeak peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF851AOI 8500173 ENCODE Processing Pipeline bc43ae93bd827cd789cc3700f9e0bab8 https://www.encodeproject.org/files/ENCFF270WPW/@@download/ENCFF270WPW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF996TPZ bed narrowPeak peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF547GUP, ENCFF662MMA 4463069 ENCODE Processing Pipeline 2b636ace64310e655c19fb369ec89002 https://www.encodeproject.org/files/ENCFF996TPZ/@@download/ENCFF996TPZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF738VQW bed narrowPeak peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF298TEL, ENCFF528BOJ, ENCFF662MMA 4884266 ENCODE Processing Pipeline 2876bb8f7a9164aea845e51bffc20f5c https://www.encodeproject.org/files/ENCFF738VQW/@@download/ENCFF738VQW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF213SAD bigBed narrowPeak peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF996TPZ 9045780 ENCODE Processing Pipeline e0a77bafe6293232bd46d6b6bc349ad9 https://www.encodeproject.org/files/ENCFF213SAD/@@download/ENCFF213SAD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF581EEO bigWig signal p-value ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF298TEL, ENCFF528BOJ, ENCFF662MMA 833066760 ENCODE Processing Pipeline 10288b03132e1af1180c571163a64496 https://www.encodeproject.org/files/ENCFF581EEO/@@download/ENCFF581EEO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF621XEF bigWig signal p-value ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF547GUP 849702957 ENCODE Processing Pipeline 51cd11f2eae6974a9591e6dacf2f0820 https://www.encodeproject.org/files/ENCFF621XEF/@@download/ENCFF621XEF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF631WPF bigWig fold change over control ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF298TEL, ENCFF528BOJ, ENCFF662MMA 876661970 ENCODE Processing Pipeline dcbaa4f532a6d3edf8fd151b630dd8f8 https://www.encodeproject.org/files/ENCFF631WPF/@@download/ENCFF631WPF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF513ILD bigWig signal p-value ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF547GUP, ENCFF662MMA 1486658924 ENCODE Processing Pipeline 6c5194ae17f460c21c0773117f068844 https://www.encodeproject.org/files/ENCFF513ILD/@@download/ENCFF513ILD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF373SQM bigWig fold change over control ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF547GUP 799916361 ENCODE Processing Pipeline 292d2ee37082337dc29f54b256022a07 https://www.encodeproject.org/files/ENCFF373SQM/@@download/ENCFF373SQM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF102KDV bigWig fold change over control ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF547GUP, ENCFF662MMA 1482956630 ENCODE Processing Pipeline 30909eb697b28e8a40c88755b7e7c4e2 https://www.encodeproject.org/files/ENCFF102KDV/@@download/ENCFF102KDV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF759LSQ bed narrowPeak replicated peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF738VQW, ENCFF851AOI, ENCFF996TPZ 3482003 ENCODE Processing Pipeline bad0e8569cc94ac18835eba3d403e1b9 https://www.encodeproject.org/files/ENCFF759LSQ/@@download/ENCFF759LSQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF484RAH bigBed narrowPeak replicated peaks ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF759LSQ 5820502 ENCODE Processing Pipeline 0b112dc5afb9e094365ae280ab5d28ad https://www.encodeproject.org/files/ENCFF484RAH/@@download/ENCFF484RAH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001KOY bam alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KPJ 299959152 Bing Ren, UCSD 76fad047e775de8cd8ca7534c4225a47 https://www.encodeproject.org/files/ENCFF001KOY/@@download/ENCFF001KOY.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001KOZ bigBed broadPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XYG 416941 Bing Ren, UCSD e6abf4adcf49c2af7354fee90952b3e6 https://www.encodeproject.org/files/ENCFF001KOZ/@@download/ENCFF001KOZ.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001KPA bam alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KPH 340156436 Bing Ren, UCSD f4df88671b97922e715a6cc370a41244 https://www.encodeproject.org/files/ENCFF001KPA/@@download/ENCFF001KPA.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001KPC bigWig signal ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KOY, ENCFF001KPA 34694378 Bing Ren, UCSD 84902d5c208de40cd0bebee6a8e912c8 https://www.encodeproject.org/files/ENCFF001KPC/@@download/ENCFF001KPC.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001KPH fastq reads ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 806591445 Bing Ren, UCSD e0d988e0bc75d98c60f41f1177026e22 https://www.encodeproject.org/files/ENCFF001KPH/@@download/ENCFF001KPH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPS/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001KPJ fastq reads ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 839073153 Bing Ren, UCSD 750b9609b5913e928eb949d5ccc25d36 https://www.encodeproject.org/files/ENCFF001KPJ/@@download/ENCFF001KPJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPR/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001XYG bed broadPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KOY, ENCFF001KPA 279653 Bing Ren, UCSD bb1ed9a8f85c119c8c9b3f5b2fb1eec8 https://www.encodeproject.org/files/ENCFF001XYG/@@download/ENCFF001XYG.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF214QES bam unfiltered alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPH, ENCFF018NEO 811429373 ENCODE Processing Pipeline e74c42c0953d007ffb91b32bb319b754 https://www.encodeproject.org/files/ENCFF214QES/@@download/ENCFF214QES.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF987QSS bam unfiltered alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPJ, ENCFF018NEO 830576567 ENCODE Processing Pipeline 7e166e7046317ad815cb2ef4a66ccdf6 https://www.encodeproject.org/files/ENCFF987QSS/@@download/ENCFF987QSS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF113EPQ bam alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPJ, ENCFF018NEO 245469841 ENCODE Processing Pipeline 44730b6d4a3b4ada61264d35ef032be9 https://www.encodeproject.org/files/ENCFF113EPQ/@@download/ENCFF113EPQ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF905SDU bam alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPH, ENCFF018NEO 275112875 ENCODE Processing Pipeline 374643c1b57f8be07a79a3f73ea75802 https://www.encodeproject.org/files/ENCFF905SDU/@@download/ENCFF905SDU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF072FSS bed narrowPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF545AEW, ENCFF905SDU 680253 ENCODE Processing Pipeline bbd4269571947c47dc97cf5d804804d3 https://www.encodeproject.org/files/ENCFF072FSS/@@download/ENCFF072FSS.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF677UQK bed narrowPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF113EPQ, ENCFF161DPJ, ENCFF545AEW, ENCFF905SDU 744209 ENCODE Processing Pipeline 9794dcf3ad3878b3f72f814eed7b2024 https://www.encodeproject.org/files/ENCFF677UQK/@@download/ENCFF677UQK.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF566EKQ bigBed narrowPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF897QUE 2022623 ENCODE Processing Pipeline 216cadf87b729f6c32c0670b2563c12e https://www.encodeproject.org/files/ENCFF566EKQ/@@download/ENCFF566EKQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF897QUE bed narrowPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF113EPQ, ENCFF161DPJ 692298 ENCODE Processing Pipeline 3852ce79af31e6f4480737db85ae0b42 https://www.encodeproject.org/files/ENCFF897QUE/@@download/ENCFF897QUE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF695BMP bigWig signal p-value ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF113EPQ, ENCFF161DPJ 250422178 ENCODE Processing Pipeline ee7815833d65abfc83c1127c4b7dcf8a https://www.encodeproject.org/files/ENCFF695BMP/@@download/ENCFF695BMP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF665LZZ bigBed narrowPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF677UQK 2011416 ENCODE Processing Pipeline 53fb08c324f3a0292f95fcfe67335afc https://www.encodeproject.org/files/ENCFF665LZZ/@@download/ENCFF665LZZ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF064WXU bigBed narrowPeak peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF072FSS 1978877 ENCODE Processing Pipeline 350ea09539f501a93a021dabfcb4b8ad https://www.encodeproject.org/files/ENCFF064WXU/@@download/ENCFF064WXU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF735NXD bigWig signal p-value ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF113EPQ, ENCFF161DPJ, ENCFF545AEW, ENCFF905SDU 433121309 ENCODE Processing Pipeline 346a95a233d5f1df5a230f1132bd501d https://www.encodeproject.org/files/ENCFF735NXD/@@download/ENCFF735NXD.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF721GDI bigWig signal p-value ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF545AEW, ENCFF905SDU 286743444 ENCODE Processing Pipeline 83cfdd53f944e1d61cd2f14dd4cbbeaf https://www.encodeproject.org/files/ENCFF721GDI/@@download/ENCFF721GDI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF581VIC bigWig fold change over control ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF113EPQ, ENCFF161DPJ 93221931 ENCODE Processing Pipeline 40c14c1ffff29fd0f6fd93a9b95e6fab https://www.encodeproject.org/files/ENCFF581VIC/@@download/ENCFF581VIC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF379VFT bigWig fold change over control ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF113EPQ, ENCFF161DPJ, ENCFF545AEW, ENCFF905SDU 228244224 ENCODE Processing Pipeline e9c91f5fcc3c08236e76714e44058e8f https://www.encodeproject.org/files/ENCFF379VFT/@@download/ENCFF379VFT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF357JNZ bed narrowPeak replicated peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF072FSS, ENCFF677UQK, ENCFF897QUE 831985 ENCODE Processing Pipeline 2544790d6b13d60b20df07ddadc58dd4 https://www.encodeproject.org/files/ENCFF357JNZ/@@download/ENCFF357JNZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF985LOZ bigWig fold change over control ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF545AEW, ENCFF905SDU 113374170 ENCODE Processing Pipeline ebfc0f0330fb9d288b73d18809b86977 https://www.encodeproject.org/files/ENCFF985LOZ/@@download/ENCFF985LOZ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF782TBP bigBed narrowPeak replicated peaks ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF357JNZ 1721507 ENCODE Processing Pipeline 64da9ad6cfaf7cfe1a19aab580c84268 https://www.encodeproject.org/files/ENCFF782TBP/@@download/ENCFF782TBP.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF992ZDK fastq reads ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2404990495 Bing Ren, UCSD e828dc4f34e90d057166484ad7a1ed65 SRA:SRR3653269 https://www.encodeproject.org/files/ENCFF992ZDK/@@download/ENCFF992ZDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms ENCFF377FPI fastq reads ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1929630417 Bing Ren, UCSD 812239cc856616a3d084cf5b6ad4b409 SRA:SRR3653268 https://www.encodeproject.org/files/ENCFF377FPI/@@download/ENCFF377FPI.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms ENCFF201AZE bam alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF992ZDK 2012101872 ENCODE Processing Pipeline f8c527aaf5bd5fb4fd99b81dc434636b https://www.encodeproject.org/files/ENCFF201AZE/@@download/ENCFF201AZE.bam mm10-minimal archived inconsistent platforms ENCFF919PKG bam alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF377FPI, ENCFF806TVZ 1575966597 ENCODE Processing Pipeline a21814536c195cef13428cd4acafc09c https://www.encodeproject.org/files/ENCFF919PKG/@@download/ENCFF919PKG.bam mm10-minimal archived inconsistent platforms ENCFF097HTH bed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF711NEU, ENCFF919PKG 1347586 ENCODE Processing Pipeline 4c8adf7e8906d5aec97063383b8a3924 https://www.encodeproject.org/files/ENCFF097HTH/@@download/ENCFF097HTH.bed.gz mm10-minimal archived inconsistent platforms ENCFF806RRK bed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF201AZE, ENCFF236JLN, ENCFF711NEU, ENCFF919PKG 1824278 ENCODE Processing Pipeline d7638e14c0b7231ffa2d699a7e179be7 https://www.encodeproject.org/files/ENCFF806RRK/@@download/ENCFF806RRK.bed.gz mm10-minimal archived inconsistent platforms ENCFF884XEK bed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF201AZE, ENCFF236JLN 1727416 ENCODE Processing Pipeline c6a326b1b56fb2ab214cde76df55c1ae https://www.encodeproject.org/files/ENCFF884XEK/@@download/ENCFF884XEK.bed.gz mm10-minimal archived inconsistent platforms ENCFF298IQH bigBed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF884XEK 4829179 ENCODE Processing Pipeline ca7937742ab1fe877745ca4abbb8dd12 https://www.encodeproject.org/files/ENCFF298IQH/@@download/ENCFF298IQH.bigBed mm10-minimal archived inconsistent platforms ENCFF208VAW bigBed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF097HTH 3154596 ENCODE Processing Pipeline f156a4cb1ccd8e918c32f7405542c345 https://www.encodeproject.org/files/ENCFF208VAW/@@download/ENCFF208VAW.bigBed mm10-minimal archived inconsistent platforms ENCFF497UHF bigBed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF806RRK 5058436 ENCODE Processing Pipeline 82043a47cc21cb41c2d6ce00f03a24d6 https://www.encodeproject.org/files/ENCFF497UHF/@@download/ENCFF497UHF.bigBed mm10-minimal archived inconsistent platforms ENCFF594AKQ bigWig signal p-value ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF201AZE, ENCFF236JLN 608113349 ENCODE Processing Pipeline 894fb894ce9ea775b30c574b1fcd6423 https://www.encodeproject.org/files/ENCFF594AKQ/@@download/ENCFF594AKQ.bigWig mm10-minimal archived inconsistent platforms ENCFF282HQY bigWig signal p-value ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF711NEU, ENCFF919PKG 530190646 ENCODE Processing Pipeline db8288f7de9bd3c5dca1c8e3c7958dd6 https://www.encodeproject.org/files/ENCFF282HQY/@@download/ENCFF282HQY.bigWig mm10-minimal archived inconsistent platforms ENCFF262ROB bigWig signal p-value ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF201AZE, ENCFF236JLN, ENCFF711NEU, ENCFF919PKG 1009671078 ENCODE Processing Pipeline 76722349768b29e2c1aebb09d59cf56a https://www.encodeproject.org/files/ENCFF262ROB/@@download/ENCFF262ROB.bigWig mm10-minimal archived inconsistent platforms ENCFF366PAW bigWig fold change over control ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF201AZE, ENCFF236JLN 682008723 ENCODE Processing Pipeline 93e0fb0ddc1c8cadda4298b780f9832a https://www.encodeproject.org/files/ENCFF366PAW/@@download/ENCFF366PAW.bigWig mm10-minimal archived inconsistent platforms ENCFF606QWA bigWig fold change over control ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF711NEU, ENCFF919PKG 566355488 ENCODE Processing Pipeline 4bb83c81f965b1da5cc77bd8ded41d93 https://www.encodeproject.org/files/ENCFF606QWA/@@download/ENCFF606QWA.bigWig mm10-minimal archived inconsistent platforms ENCFF266SZY bigWig fold change over control ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF201AZE, ENCFF236JLN, ENCFF711NEU, ENCFF919PKG 1230838890 ENCODE Processing Pipeline b674ddb8a3fe45291767fb8931956a3c https://www.encodeproject.org/files/ENCFF266SZY/@@download/ENCFF266SZY.bigWig mm10-minimal archived inconsistent platforms ENCFF276LGV bigBed narrowPeak replicated peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF635UQJ 2956842 ENCODE Processing Pipeline fa301936b55caa1ea1f0102369e3161c https://www.encodeproject.org/files/ENCFF276LGV/@@download/ENCFF276LGV.bigBed mm10-minimal archived inconsistent platforms ENCFF635UQJ bed narrowPeak replicated peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF097HTH, ENCFF806RRK, ENCFF884XEK 1326489 ENCODE Processing Pipeline 6e34312391e1f6b91ac561a26151fd13 https://www.encodeproject.org/files/ENCFF635UQJ/@@download/ENCFF635UQJ.bed.gz mm10-minimal archived inconsistent platforms ENCFF432ZYO bam unfiltered alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF377FPI 2319959554 ENCODE Processing Pipeline 9ee636dcdf9caee3248c58906cc8800d https://www.encodeproject.org/files/ENCFF432ZYO/@@download/ENCFF432ZYO.bam mm10 released inconsistent platforms ENCFF149ZUF bam unfiltered alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF992ZDK 2866285248 ENCODE Processing Pipeline d4fc57536b58886e5243d892a0f186ac https://www.encodeproject.org/files/ENCFF149ZUF/@@download/ENCFF149ZUF.bam mm10 released inconsistent platforms ENCFF939RVY bam alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF377FPI 1575549245 ENCODE Processing Pipeline 89e1f6448660e39d0a4045776f6693ed https://www.encodeproject.org/files/ENCFF939RVY/@@download/ENCFF939RVY.bam mm10 released inconsistent platforms ENCFF114TCD bam alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF992ZDK 2011681956 ENCODE Processing Pipeline 0aa6487bcf0e168c0b373544b8c0e378 https://www.encodeproject.org/files/ENCFF114TCD/@@download/ENCFF114TCD.bam mm10 released inconsistent platforms ENCFF914ACE bed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF114TCD, ENCFF125FAE, ENCFF580YCN, ENCFF939RVY 1898755 ENCODE Processing Pipeline 3475cbfd8457d3043e4ddc7623b3f681 https://www.encodeproject.org/files/ENCFF914ACE/@@download/ENCFF914ACE.bed.gz mm10 released inconsistent platforms ENCFF656DVY bed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF114TCD, ENCFF125FAE, ENCFF580YCN 1842256 ENCODE Processing Pipeline 306402f3b8d6b18d7d1463e500a2b5be https://www.encodeproject.org/files/ENCFF656DVY/@@download/ENCFF656DVY.bed.gz mm10 released inconsistent platforms ENCFF134JDQ bed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF939RVY 1486710 ENCODE Processing Pipeline b1d7c8838f5b343c0b9acbcdbc626970 https://www.encodeproject.org/files/ENCFF134JDQ/@@download/ENCFF134JDQ.bed.gz mm10 released inconsistent platforms ENCFF679XVE bigBed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF656DVY 5137738 ENCODE Processing Pipeline 3ab2da81899b62eec1f319744c88a8fd https://www.encodeproject.org/files/ENCFF679XVE/@@download/ENCFF679XVE.bigBed mm10 released inconsistent platforms ENCFF338SLG bigBed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF134JDQ 3474186 ENCODE Processing Pipeline 48d013635dedbc31be31be862edc8426 https://www.encodeproject.org/files/ENCFF338SLG/@@download/ENCFF338SLG.bigBed mm10 released inconsistent platforms ENCFF803YFN bigWig signal p-value ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF114TCD, ENCFF125FAE, ENCFF580YCN 925353308 ENCODE Processing Pipeline 1bfa438958d8b27f95d69cb63f7d2ff0 https://www.encodeproject.org/files/ENCFF803YFN/@@download/ENCFF803YFN.bigWig mm10 released inconsistent platforms ENCFF184EKU bigBed narrowPeak peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF914ACE 5235234 ENCODE Processing Pipeline 096de07f1de41d95433993d0486c944a https://www.encodeproject.org/files/ENCFF184EKU/@@download/ENCFF184EKU.bigBed mm10 released inconsistent platforms ENCFF466PFJ bigWig signal p-value ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF939RVY 857151610 ENCODE Processing Pipeline 3d144b7f9ec6c070bbdc13767af97cb8 https://www.encodeproject.org/files/ENCFF466PFJ/@@download/ENCFF466PFJ.bigWig mm10 released inconsistent platforms ENCFF989PBH bigWig signal p-value ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF114TCD, ENCFF125FAE, ENCFF580YCN, ENCFF939RVY 1282348797 ENCODE Processing Pipeline eba9856801802926ff81757e2367a2b4 https://www.encodeproject.org/files/ENCFF989PBH/@@download/ENCFF989PBH.bigWig mm10 released inconsistent platforms ENCFF745KBA bigWig fold change over control ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF114TCD, ENCFF125FAE, ENCFF580YCN 985445508 ENCODE Processing Pipeline cadbd3943927b0a1fc6a74b9f696eb12 https://www.encodeproject.org/files/ENCFF745KBA/@@download/ENCFF745KBA.bigWig mm10 released inconsistent platforms ENCFF150ZGQ bigWig fold change over control ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF580YCN, ENCFF939RVY 862313617 ENCODE Processing Pipeline 0ae84105ca2dc25084c1698173e67df4 https://www.encodeproject.org/files/ENCFF150ZGQ/@@download/ENCFF150ZGQ.bigWig mm10 released inconsistent platforms ENCFF604BOY bigWig fold change over control ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF114TCD, ENCFF125FAE, ENCFF580YCN, ENCFF939RVY 1299796131 ENCODE Processing Pipeline 5cf421a692c239000c3f1f64c9e324aa https://www.encodeproject.org/files/ENCFF604BOY/@@download/ENCFF604BOY.bigWig mm10 released inconsistent platforms ENCFF160HCA bed narrowPeak replicated peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF134JDQ, ENCFF656DVY, ENCFF914ACE 1417198 ENCODE Processing Pipeline 07e1120c4fc1ef8e61cbcd084a633cbb https://www.encodeproject.org/files/ENCFF160HCA/@@download/ENCFF160HCA.bed.gz mm10 released inconsistent platforms ENCFF941GHF bigBed narrowPeak replicated peaks ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF160HCA 3108302 ENCODE Processing Pipeline fa6eb867d3ea0ac3129a3f1b7bcab3c1 https://www.encodeproject.org/files/ENCFF941GHF/@@download/ENCFF941GHF.bigBed mm10 released inconsistent platforms ENCFF994NHO fastq reads ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2663325786 Bing Ren, UCSD dd406e46d7de2308914e669c5d28751a SRA:SRR4235740 https://www.encodeproject.org/files/ENCFF994NHO/@@download/ENCFF994NHO.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released mild to moderate bottlenecking ENCFF629KPS fastq reads ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2146148643 Bing Ren, UCSD 22dd1589025ca15d829f383b79927c90 SRA:SRR4235739 https://www.encodeproject.org/files/ENCFF629KPS/@@download/ENCFF629KPS.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released mild to moderate bottlenecking ENCFF995LSU bam unfiltered alignments ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF994NHO 3519912987 ENCODE Processing Pipeline b5e04d4b2a3ed6f45f27027640b30654 https://www.encodeproject.org/files/ENCFF995LSU/@@download/ENCFF995LSU.bam mm10 released mild to moderate bottlenecking ENCFF904BTD bam unfiltered alignments ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF629KPS 2817471465 ENCODE Processing Pipeline 646dab59ffe9f6093eabdfa4083a0329 https://www.encodeproject.org/files/ENCFF904BTD/@@download/ENCFF904BTD.bam mm10 released mild to moderate bottlenecking ENCFF069APB bam alignments ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF629KPS 953648619 ENCODE Processing Pipeline fc9c45e261a823daf6dff82739f2a6a8 https://www.encodeproject.org/files/ENCFF069APB/@@download/ENCFF069APB.bam mm10 released mild to moderate bottlenecking ENCFF113IBJ bam alignments ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF994NHO 1656116181 ENCODE Processing Pipeline 90061ee94d6176d7aeb4c7181dd67005 https://www.encodeproject.org/files/ENCFF113IBJ/@@download/ENCFF113IBJ.bam mm10 released mild to moderate bottlenecking ENCFF784YAU bed narrowPeak peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF069APB, ENCFF778IFH 2210326 ENCODE Processing Pipeline 101431c5849667f29cde53978110ecbe https://www.encodeproject.org/files/ENCFF784YAU/@@download/ENCFF784YAU.bed.gz mm10 released mild to moderate bottlenecking ENCFF883CPR bed narrowPeak peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF113IBJ, ENCFF689YLF 955237 ENCODE Processing Pipeline 7da1e6a41f6c581c509e3eda6a988f4e https://www.encodeproject.org/files/ENCFF883CPR/@@download/ENCFF883CPR.bed.gz mm10 released mild to moderate bottlenecking ENCFF176BLI bed narrowPeak peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF069APB, ENCFF113IBJ, ENCFF689YLF, ENCFF778IFH 2068727 ENCODE Processing Pipeline 9c5317ac7150dffd2b114d71028f5f05 https://www.encodeproject.org/files/ENCFF176BLI/@@download/ENCFF176BLI.bed.gz mm10 released mild to moderate bottlenecking ENCFF047TBN bigBed narrowPeak peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF784YAU 4836821 ENCODE Processing Pipeline 133aac2ba7590184fd421daca8edfcbc https://www.encodeproject.org/files/ENCFF047TBN/@@download/ENCFF047TBN.bigBed mm10 released mild to moderate bottlenecking ENCFF478BCM bigBed narrowPeak peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF883CPR 2030063 ENCODE Processing Pipeline a660a46882a0989221975e918d10231b https://www.encodeproject.org/files/ENCFF478BCM/@@download/ENCFF478BCM.bigBed mm10 released mild to moderate bottlenecking ENCFF069KKE bigWig signal p-value ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF069APB, ENCFF778IFH 556393418 ENCODE Processing Pipeline 7196cdd8785ef11a915cf9b209b035a5 https://www.encodeproject.org/files/ENCFF069KKE/@@download/ENCFF069KKE.bigWig mm10 released mild to moderate bottlenecking ENCFF736UQM bigBed narrowPeak peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF176BLI 4646907 ENCODE Processing Pipeline 080051151c45e167b192565d01c7ae85 https://www.encodeproject.org/files/ENCFF736UQM/@@download/ENCFF736UQM.bigBed mm10 released mild to moderate bottlenecking ENCFF485MZX bigWig signal p-value ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF113IBJ, ENCFF689YLF 602281361 ENCODE Processing Pipeline adc7904ddb44299c6a99d5fd82232ba1 https://www.encodeproject.org/files/ENCFF485MZX/@@download/ENCFF485MZX.bigWig mm10 released mild to moderate bottlenecking ENCFF620MEH bigWig signal p-value ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF069APB, ENCFF113IBJ, ENCFF689YLF, ENCFF778IFH 949622736 ENCODE Processing Pipeline b0ddf7306327225d31b6d5f347fbbdb3 https://www.encodeproject.org/files/ENCFF620MEH/@@download/ENCFF620MEH.bigWig mm10 released mild to moderate bottlenecking ENCFF384CMP bigWig fold change over control ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF069APB, ENCFF778IFH 475059888 ENCODE Processing Pipeline 5aa561fb8f9dd2b838d42da3b38f489e https://www.encodeproject.org/files/ENCFF384CMP/@@download/ENCFF384CMP.bigWig mm10 released mild to moderate bottlenecking ENCFF111BMZ bigWig fold change over control ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF113IBJ, ENCFF689YLF 665388892 ENCODE Processing Pipeline 5f964a5ad188a5d19b7e0ab6c51efb7f https://www.encodeproject.org/files/ENCFF111BMZ/@@download/ENCFF111BMZ.bigWig mm10 released mild to moderate bottlenecking ENCFF075BNF bigWig fold change over control ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF069APB, ENCFF113IBJ, ENCFF689YLF, ENCFF778IFH 1155620855 ENCODE Processing Pipeline 1082eb427118cd48d50ff95a224c7857 https://www.encodeproject.org/files/ENCFF075BNF/@@download/ENCFF075BNF.bigWig mm10 released mild to moderate bottlenecking ENCFF683NUM bigBed narrowPeak replicated peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF009ZBN 2092044 ENCODE Processing Pipeline 0c1501f077c10b84aa0447c98f203063 https://www.encodeproject.org/files/ENCFF683NUM/@@download/ENCFF683NUM.bigBed mm10 released mild to moderate bottlenecking ENCFF009ZBN bed narrowPeak replicated peaks ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF176BLI, ENCFF784YAU, ENCFF883CPR 977272 ENCODE Processing Pipeline c5d5303edd6a74e4cba78ce50143d040 https://www.encodeproject.org/files/ENCFF009ZBN/@@download/ENCFF009ZBN.bed.gz mm10 released mild to moderate bottlenecking ENCFF347VNX fastq reads ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2279573901 Bing Ren, UCSD e09f5a5ff95b93f2888bb69b5d68c5e3 SRA:SRR4235753 https://www.encodeproject.org/files/ENCFF347VNX/@@download/ENCFF347VNX.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released mild to moderate bottlenecking ENCFF604NXN fastq reads ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2011771569 Bing Ren, UCSD 9fa7998a6b08af0ca62caed3db2f9803 SRA:SRR4235752 https://www.encodeproject.org/files/ENCFF604NXN/@@download/ENCFF604NXN.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released mild to moderate bottlenecking ENCFF609QGN bam unfiltered alignments ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF347VNX 3022725876 ENCODE Processing Pipeline bbc3f62610b772c8f6ef6dee339fb9a7 https://www.encodeproject.org/files/ENCFF609QGN/@@download/ENCFF609QGN.bam mm10 released mild to moderate bottlenecking ENCFF107JLR bam unfiltered alignments ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF604NXN 2655853657 ENCODE Processing Pipeline 21d092accc97a1fc12677c915151a889 https://www.encodeproject.org/files/ENCFF107JLR/@@download/ENCFF107JLR.bam mm10 released mild to moderate bottlenecking ENCFF977HIL bam alignments ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF604NXN 948777549 ENCODE Processing Pipeline 7f8d5298474b2a9499c0c3dbe95d65fa https://www.encodeproject.org/files/ENCFF977HIL/@@download/ENCFF977HIL.bam mm10 released mild to moderate bottlenecking ENCFF828JBJ bam alignments ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF347VNX 1337352661 ENCODE Processing Pipeline ca7a8d1c149e260a20e8b1e493d2184a https://www.encodeproject.org/files/ENCFF828JBJ/@@download/ENCFF828JBJ.bam mm10 released mild to moderate bottlenecking ENCFF699LOQ bed narrowPeak peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF528BOJ, ENCFF977HIL 2010371 ENCODE Processing Pipeline e154d2e0e1d81f52f8351ca065bee4cb https://www.encodeproject.org/files/ENCFF699LOQ/@@download/ENCFF699LOQ.bed.gz mm10 released mild to moderate bottlenecking ENCFF224AGN bed narrowPeak peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF828JBJ 937735 ENCODE Processing Pipeline f9c89fca03c04d9a22f055778499dc8c https://www.encodeproject.org/files/ENCFF224AGN/@@download/ENCFF224AGN.bed.gz mm10 released mild to moderate bottlenecking ENCFF888SOZ bed narrowPeak peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF828JBJ, ENCFF977HIL 2649778 ENCODE Processing Pipeline d503096f35c3853856360fc994c02c0a https://www.encodeproject.org/files/ENCFF888SOZ/@@download/ENCFF888SOZ.bed.gz mm10 released mild to moderate bottlenecking ENCFF673GQB bigBed narrowPeak peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF699LOQ 4363072 ENCODE Processing Pipeline 7d9a3a929f49ef0ee03e5dbda09102c1 https://www.encodeproject.org/files/ENCFF673GQB/@@download/ENCFF673GQB.bigBed mm10 released mild to moderate bottlenecking ENCFF367DDU bigWig signal p-value ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF828JBJ 562071974 ENCODE Processing Pipeline 46787e9fa906c461e2d7f6284673b085 https://www.encodeproject.org/files/ENCFF367DDU/@@download/ENCFF367DDU.bigWig mm10 released mild to moderate bottlenecking ENCFF138JIM bigBed narrowPeak peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF224AGN 1915311 ENCODE Processing Pipeline 2b084dc0b10707bf47d023cf066787c4 https://www.encodeproject.org/files/ENCFF138JIM/@@download/ENCFF138JIM.bigBed mm10 released mild to moderate bottlenecking ENCFF170TWS bigBed narrowPeak peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF888SOZ 5733015 ENCODE Processing Pipeline 88af603030ed482757b79ad1d5d12cf0 https://www.encodeproject.org/files/ENCFF170TWS/@@download/ENCFF170TWS.bigBed mm10 released mild to moderate bottlenecking ENCFF524PBP bigWig signal p-value ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF528BOJ, ENCFF977HIL 508529208 ENCODE Processing Pipeline 30d13f7aab7ebbe38233148d6f8d4667 https://www.encodeproject.org/files/ENCFF524PBP/@@download/ENCFF524PBP.bigWig mm10 released mild to moderate bottlenecking ENCFF146OEL bigWig signal p-value ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF828JBJ, ENCFF977HIL 959946021 ENCODE Processing Pipeline 4277c7275058992290006ead2af31876 https://www.encodeproject.org/files/ENCFF146OEL/@@download/ENCFF146OEL.bigWig mm10 released mild to moderate bottlenecking ENCFF116WGJ bigWig fold change over control ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF828JBJ 557014172 ENCODE Processing Pipeline 47bfb4644912a10db35149e8634e214e https://www.encodeproject.org/files/ENCFF116WGJ/@@download/ENCFF116WGJ.bigWig mm10 released mild to moderate bottlenecking ENCFF070FOU bigWig fold change over control ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF528BOJ, ENCFF977HIL 419753963 ENCODE Processing Pipeline 9513e5ad91995516e1704c807a895a06 https://www.encodeproject.org/files/ENCFF070FOU/@@download/ENCFF070FOU.bigWig mm10 released mild to moderate bottlenecking ENCFF343IMA bed narrowPeak replicated peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF224AGN, ENCFF699LOQ, ENCFF888SOZ 924728 ENCODE Processing Pipeline 678d83d366871c36c66dc62cf329af8f https://www.encodeproject.org/files/ENCFF343IMA/@@download/ENCFF343IMA.bed.gz mm10 released mild to moderate bottlenecking ENCFF190AYI bigWig fold change over control ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF828JBJ, ENCFF977HIL 1043288069 ENCODE Processing Pipeline fb01393beb8c83cb974e03f411db19aa https://www.encodeproject.org/files/ENCFF190AYI/@@download/ENCFF190AYI.bigWig mm10 released mild to moderate bottlenecking ENCFF339BXS bigBed narrowPeak replicated peaks ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF343IMA 1943336 ENCODE Processing Pipeline bc222628124e0b6306bf2dd4abf21f80 https://www.encodeproject.org/files/ENCFF339BXS/@@download/ENCFF339BXS.bigBed mm10 released mild to moderate bottlenecking ENCFF001KJF bam alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KJS 392920993 Bing Ren, UCSD ccecdd02877c8797358b88aea4c4562e https://www.encodeproject.org/files/ENCFF001KJF/@@download/ENCFF001KJF.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KJG bam alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KJU 649001871 Bing Ren, UCSD 35723c1d22a94efe4522f5157ca95428 https://www.encodeproject.org/files/ENCFF001KJG/@@download/ENCFF001KJG.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KJH bigBed broadPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XXN 1699093 Bing Ren, UCSD 4cbe10b724bd0fa763e784d9ea2f060b https://www.encodeproject.org/files/ENCFF001KJH/@@download/ENCFF001KJH.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KJL bigWig signal ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KJF, ENCFF001KJG 55389943 Bing Ren, UCSD 10fbd65f657a3420f52640053343f1b6 https://www.encodeproject.org/files/ENCFF001KJL/@@download/ENCFF001KJL.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KJS fastq reads ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 634493920 Bing Ren, UCSD 90c3045e59a024a9a27fc3485be510ea https://www.encodeproject.org/files/ENCFF001KJS/@@download/ENCFF001KJS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKE/ released low read length insufficient read depth, control insufficient read depth ENCFF001KJU fastq reads ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 681506389 Bing Ren, UCSD 53f94ac56a1471b853817545f59a119b https://www.encodeproject.org/files/ENCFF001KJU/@@download/ENCFF001KJU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKF/ released low read length insufficient read depth, control insufficient read depth ENCFF001XXN bed broadPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KJF, ENCFF001KJG 901153 Bing Ren, UCSD b8733594185a2d105a41123b6cae6151 https://www.encodeproject.org/files/ENCFF001XXN/@@download/ENCFF001XXN.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF881OBU bam alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KJU, ENCFF018NEO 570811298 ENCODE Processing Pipeline d6ed7ef0be77bc06621ed6a05bd2b580 https://www.encodeproject.org/files/ENCFF881OBU/@@download/ENCFF881OBU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF080AYI bam unfiltered alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KJS, ENCFF018NEO 703776437 ENCODE Processing Pipeline 1cd4aef7a7cabe6450bbcb15c44257a5 https://www.encodeproject.org/files/ENCFF080AYI/@@download/ENCFF080AYI.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF837MCX bam unfiltered alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KJU, ENCFF018NEO 789165809 ENCODE Processing Pipeline 86af2ae74d33658c678c9e089ccb1cdb https://www.encodeproject.org/files/ENCFF837MCX/@@download/ENCFF837MCX.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF563LOO bam alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KJS, ENCFF018NEO 431747254 ENCODE Processing Pipeline 9269d5308e8369eeaffc560b2c7a061f https://www.encodeproject.org/files/ENCFF563LOO/@@download/ENCFF563LOO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF379DWO bed narrowPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF396FNQ, ENCFF563LOO, ENCFF862XUW, ENCFF881OBU 2402787 ENCODE Processing Pipeline 8660865b6baa4aeae7b198d26a93a09b https://www.encodeproject.org/files/ENCFF379DWO/@@download/ENCFF379DWO.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF764QKN bed narrowPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF396FNQ, ENCFF563LOO, ENCFF862XUW 2815630 ENCODE Processing Pipeline 0c88599f55756315b5889c69a0dd9692 https://www.encodeproject.org/files/ENCFF764QKN/@@download/ENCFF764QKN.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF242PZD bed narrowPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF396FNQ, ENCFF862XUW, ENCFF881OBU 2178740 ENCODE Processing Pipeline b637c6b2de0194ffc42a5c420b70ac9a https://www.encodeproject.org/files/ENCFF242PZD/@@download/ENCFF242PZD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF367OTD bigBed narrowPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF379DWO 6830034 ENCODE Processing Pipeline e169e5fff313a4809c28f47ec61f7ebc https://www.encodeproject.org/files/ENCFF367OTD/@@download/ENCFF367OTD.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF050FEG bigBed narrowPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF764QKN 7762047 ENCODE Processing Pipeline b0014591279527c49415f56c56992221 https://www.encodeproject.org/files/ENCFF050FEG/@@download/ENCFF050FEG.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF655CWU bigBed narrowPeak peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF242PZD 5453920 ENCODE Processing Pipeline b99ef1ed91bff397b3363dd8cb96c49e https://www.encodeproject.org/files/ENCFF655CWU/@@download/ENCFF655CWU.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF701ZCC bigWig signal p-value ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF396FNQ, ENCFF563LOO, ENCFF862XUW 296703368 ENCODE Processing Pipeline 3ac5914901c9c88bf69aff4a7ff92678 https://www.encodeproject.org/files/ENCFF701ZCC/@@download/ENCFF701ZCC.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF059HHS bigWig signal p-value ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF396FNQ, ENCFF862XUW, ENCFF881OBU 397963811 ENCODE Processing Pipeline 364b26f1f77ae41e65a2fe02bc4f25b1 https://www.encodeproject.org/files/ENCFF059HHS/@@download/ENCFF059HHS.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF245RVA bigWig signal p-value ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF396FNQ, ENCFF563LOO, ENCFF862XUW, ENCFF881OBU 399100886 ENCODE Processing Pipeline a4faee4aa24b7fe7cdf939cb2d398220 https://www.encodeproject.org/files/ENCFF245RVA/@@download/ENCFF245RVA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF859PSM bigWig fold change over control ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF396FNQ, ENCFF862XUW, ENCFF881OBU 257088468 ENCODE Processing Pipeline cfc009c6aa5457015a63ac37a5ac8f7b https://www.encodeproject.org/files/ENCFF859PSM/@@download/ENCFF859PSM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF734ZRI bigWig fold change over control ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF396FNQ, ENCFF563LOO, ENCFF862XUW 204880975 ENCODE Processing Pipeline 7c19ec2d02e595a8d40b8c30d0287d54 https://www.encodeproject.org/files/ENCFF734ZRI/@@download/ENCFF734ZRI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF192PPW bigWig fold change over control ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF396FNQ, ENCFF563LOO, ENCFF862XUW, ENCFF881OBU 390673363 ENCODE Processing Pipeline 37828d0e3c34ea1a115e89a6cc500cf7 https://www.encodeproject.org/files/ENCFF192PPW/@@download/ENCFF192PPW.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF580CRI bigBed narrowPeak replicated peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF323VQM 4618898 ENCODE Processing Pipeline 8837ecf9a7ae4afb2efec11b6d15b008 https://www.encodeproject.org/files/ENCFF580CRI/@@download/ENCFF580CRI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF323VQM bed narrowPeak replicated peaks ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF242PZD, ENCFF379DWO, ENCFF764QKN 2075237 ENCODE Processing Pipeline ccf8a73cfd71f67080ab6cffa808eaf0 https://www.encodeproject.org/files/ENCFF323VQM/@@download/ENCFF323VQM.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001NTX bigWig signal ENCSR125ZWM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2011-09-19 ENCODE 367668406 Sherman Weissman, Yale 21afe4070b371432f83b06c2f1d58c19 https://www.encodeproject.org/files/ENCFF001NTX/@@download/ENCFF001NTX.bigWig mm9 released low read length, mild to moderate bottlenecking missing derived_from, insufficient read depth for broad peaks control ENCFF001NTM fastq reads ENCSR125ZWM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 913289068 Sherman Weissman, Yale 44e036fc1848140df04974b94ca5d2c3 https://www.encodeproject.org/files/ENCFF001NTM/@@download/ENCFF001NTM.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking insufficient read depth for broad peaks control ENCFF001NTP fastq reads ENCSR125ZWM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1228087096 Sherman Weissman, Yale d0e286aad5f5a3840382b24c83cc6da3 https://www.encodeproject.org/files/ENCFF001NTP/@@download/ENCFF001NTP.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking insufficient read depth for broad peaks control ENCFF001NTR bam alignments ENCSR125ZWM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2011-09-19 ENCODE 964712233 Sherman Weissman, Yale 5c4733267c2290e645aa99e4efc0b437 https://www.encodeproject.org/files/ENCFF001NTR/@@download/ENCFF001NTR.bam mm9 released low read length, mild to moderate bottlenecking missing derived_from, insufficient read depth for broad peaks control ENCFF157WIR bam unfiltered alignments ENCSR125ZWM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTM, ENCFF001NTP, ENCFF018NEO 2375525193 ENCODE Processing Pipeline 506c16516493907fb44c31ae6a2a6909 https://www.encodeproject.org/files/ENCFF157WIR/@@download/ENCFF157WIR.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth for broad peaks control ENCFF063LRW bam alignments ENCSR125ZWM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTM, ENCFF001NTP, ENCFF018NEO 1533474863 ENCODE Processing Pipeline 9f97a5b07907e6a74085b564ffb01904 https://www.encodeproject.org/files/ENCFF063LRW/@@download/ENCFF063LRW.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth for broad peaks control ENCFF143QHO fastq reads ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1805634967 Bing Ren, UCSD 0dcc0ca57fa01d6f0ce3e40cf50e9709 SRA:SRR3651941 https://www.encodeproject.org/files/ENCFF143QHO/@@download/ENCFF143QHO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXL/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF777MGT fastq reads ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1710752931 Bing Ren, UCSD 8f326767e04938b1430a217394a3bd74 SRA:SRR3651939 https://www.encodeproject.org/files/ENCFF777MGT/@@download/ENCFF777MGT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXM/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF130AYG fastq reads ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 2 36 single-ended 497691844 Bing Ren, UCSD 457f906085841fadb8f56a34e932d5f1 SRA:SRR3651940 https://www.encodeproject.org/files/ENCFF130AYG/@@download/ENCFF130AYG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXM/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF324UQL bam alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF143QHO, ENCFF806TVZ 950208464 ENCODE Processing Pipeline 616f943f109933544cdfb5b771a80835 https://www.encodeproject.org/files/ENCFF324UQL/@@download/ENCFF324UQL.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF052QAP bam alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF130AYG, ENCFF777MGT, ENCFF806TVZ 989769668 ENCODE Processing Pipeline 03a0c477a43d8b6d67f547e21e7dbd87 https://www.encodeproject.org/files/ENCFF052QAP/@@download/ENCFF052QAP.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF619QAS bed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF324UQL, ENCFF395ALO, ENCFF956BKJ 496509 ENCODE Processing Pipeline 104b7d1b6d66006d7de4b6f253243f1f https://www.encodeproject.org/files/ENCFF619QAS/@@download/ENCFF619QAS.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF157MEY bed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF052QAP, ENCFF395ALO, ENCFF956BKJ 773001 ENCODE Processing Pipeline 9734ae75b895a7049b2a9850a21c637d https://www.encodeproject.org/files/ENCFF157MEY/@@download/ENCFF157MEY.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF266JIT bigBed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF619QAS 998516 ENCODE Processing Pipeline 5e9a7ec492d98e7cdc5aecd48dc5050e https://www.encodeproject.org/files/ENCFF266JIT/@@download/ENCFF266JIT.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF877ECM bigBed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF853MIN 888682 ENCODE Processing Pipeline 61f0e0402c5b1386aa463a662c887bb3 https://www.encodeproject.org/files/ENCFF877ECM/@@download/ENCFF877ECM.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF232FXY bigWig signal p-value ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF324UQL, ENCFF395ALO, ENCFF956BKJ 490338591 ENCODE Processing Pipeline a349707a29cdae213a4df6cb1dd366df https://www.encodeproject.org/files/ENCFF232FXY/@@download/ENCFF232FXY.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF853MIN bed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF052QAP, ENCFF324UQL, ENCFF395ALO, ENCFF956BKJ 349102 ENCODE Processing Pipeline 8c3c58888c9f8607e308e40af7fae60c https://www.encodeproject.org/files/ENCFF853MIN/@@download/ENCFF853MIN.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF057AML bigBed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF157MEY 1780508 ENCODE Processing Pipeline cb3faac7add5751a7e1ba4127def2963 https://www.encodeproject.org/files/ENCFF057AML/@@download/ENCFF057AML.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF232GXP bigWig signal p-value ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF052QAP, ENCFF395ALO, ENCFF956BKJ 438688942 ENCODE Processing Pipeline 10e914df10433a84b3c76dd0eddda987 https://www.encodeproject.org/files/ENCFF232GXP/@@download/ENCFF232GXP.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF809CVD bigWig signal p-value ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF052QAP, ENCFF324UQL, ENCFF395ALO, ENCFF956BKJ 529862333 ENCODE Processing Pipeline 33d359d8af773d3a195706cacc46d65f https://www.encodeproject.org/files/ENCFF809CVD/@@download/ENCFF809CVD.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF754KKD bigWig fold change over control ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF324UQL, ENCFF395ALO, ENCFF956BKJ 436630941 ENCODE Processing Pipeline d46e46e782e4826d69a81d2db93f1d76 https://www.encodeproject.org/files/ENCFF754KKD/@@download/ENCFF754KKD.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF319FKC bigWig fold change over control ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF052QAP, ENCFF395ALO, ENCFF956BKJ 442170016 ENCODE Processing Pipeline 590464e89b378f1831176fe1893a8529 https://www.encodeproject.org/files/ENCFF319FKC/@@download/ENCFF319FKC.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF830IYC bigWig fold change over control ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF052QAP, ENCFF324UQL, ENCFF395ALO, ENCFF956BKJ 705234868 ENCODE Processing Pipeline 1fc38b60e3d73cbfd9af227faea66fd7 https://www.encodeproject.org/files/ENCFF830IYC/@@download/ENCFF830IYC.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF681UVY bigBed narrowPeak replicated peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF885KMT 681374 ENCODE Processing Pipeline fc17081d8b989abf1f03d0fb01c41e0e https://www.encodeproject.org/files/ENCFF681UVY/@@download/ENCFF681UVY.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF885KMT bed narrowPeak replicated peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF157MEY, ENCFF619QAS, ENCFF853MIN 282315 ENCODE Processing Pipeline f5e36a19f14e0800948ab3efe6b3086e https://www.encodeproject.org/files/ENCFF885KMT/@@download/ENCFF885KMT.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF704ZJB bam unfiltered alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF143QHO 2270668518 ENCODE Processing Pipeline b8caca7ea03b23e8763036fa0981d046 https://www.encodeproject.org/files/ENCFF704ZJB/@@download/ENCFF704ZJB.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF155ZYB bam unfiltered alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF130AYG, ENCFF777MGT 2740764095 ENCODE Processing Pipeline 3b528ee6614ac45e3d09df55c015bfbe https://www.encodeproject.org/files/ENCFF155ZYB/@@download/ENCFF155ZYB.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF592PLJ bam alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF143QHO 949627326 ENCODE Processing Pipeline 196ef54c4126f9d71f44b7ea17efe1d6 https://www.encodeproject.org/files/ENCFF592PLJ/@@download/ENCFF592PLJ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF605ZYA bam alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF130AYG, ENCFF777MGT 989229358 ENCODE Processing Pipeline 86ffb8702a0196243469974ba294d875 https://www.encodeproject.org/files/ENCFF605ZYA/@@download/ENCFF605ZYA.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF341ARH bed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF592PLJ 499189 ENCODE Processing Pipeline 947468be6e09f4944cb51f771832dcac https://www.encodeproject.org/files/ENCFF341ARH/@@download/ENCFF341ARH.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF453KZU bed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF488PXJ, ENCFF605ZYA 300380 ENCODE Processing Pipeline c85fb473b18a840f5042c9b3af907123 https://www.encodeproject.org/files/ENCFF453KZU/@@download/ENCFF453KZU.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF105YDA bed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF592PLJ, ENCFF605ZYA 335300 ENCODE Processing Pipeline 48556f76ffa5717521b82f0bba7354fe https://www.encodeproject.org/files/ENCFF105YDA/@@download/ENCFF105YDA.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF908DPC bigBed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF341ARH 1002507 ENCODE Processing Pipeline 4a99f3a95fd3c329b252d5627e43ab9e https://www.encodeproject.org/files/ENCFF908DPC/@@download/ENCFF908DPC.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF974ZAB bigBed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF453KZU 643457 ENCODE Processing Pipeline e290ed923f3ed8266163c88f5bda1e50 https://www.encodeproject.org/files/ENCFF974ZAB/@@download/ENCFF974ZAB.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF459WMQ bigBed narrowPeak peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF105YDA 861250 ENCODE Processing Pipeline f5d35cf89f0546cd4c2494f9a7478d0f https://www.encodeproject.org/files/ENCFF459WMQ/@@download/ENCFF459WMQ.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF061SVR bigWig signal p-value ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF592PLJ 402050847 ENCODE Processing Pipeline 1af13bf6bf66f619933b86c3585fd914 https://www.encodeproject.org/files/ENCFF061SVR/@@download/ENCFF061SVR.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF893ISP bigWig signal p-value ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF488PXJ, ENCFF605ZYA 279665414 ENCODE Processing Pipeline 0137905df2c63aa1bd07d3ffe9dd6c14 https://www.encodeproject.org/files/ENCFF893ISP/@@download/ENCFF893ISP.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF349MCD bigWig signal p-value ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF592PLJ, ENCFF605ZYA 527851556 ENCODE Processing Pipeline e64f907c06e24502d942de66a50e61be https://www.encodeproject.org/files/ENCFF349MCD/@@download/ENCFF349MCD.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF218ECJ bigWig fold change over control ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF592PLJ 438145184 ENCODE Processing Pipeline 5fd8c1b91d5ecbb14d206f124d12ade4 https://www.encodeproject.org/files/ENCFF218ECJ/@@download/ENCFF218ECJ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF087WBV bigWig fold change over control ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF488PXJ, ENCFF605ZYA 356094483 ENCODE Processing Pipeline 5ccab205e72e5739a41bba9a56201424 https://www.encodeproject.org/files/ENCFF087WBV/@@download/ENCFF087WBV.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF809PQF bigWig fold change over control ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF592PLJ, ENCFF605ZYA 702375417 ENCODE Processing Pipeline d977f54e2f98383490ad2f14a8aae60b https://www.encodeproject.org/files/ENCFF809PQF/@@download/ENCFF809PQF.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF090SVU bed narrowPeak replicated peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF105YDA, ENCFF341ARH, ENCFF453KZU 247527 ENCODE Processing Pipeline ad9fdea213cdec3e3bca7f79819f0e3b https://www.encodeproject.org/files/ENCFF090SVU/@@download/ENCFF090SVU.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF373VJE bigBed narrowPeak replicated peaks ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF090SVU 617407 ENCODE Processing Pipeline 94a1733f8ea9e213e949a36107a493eb https://www.encodeproject.org/files/ENCFF373VJE/@@download/ENCFF373VJE.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF747FRP fastq reads ENCSR236UIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1713958557 Richard Myers, HAIB e09894cf06b2f9a24bfbf429add9d808 SRA:SRR5111332 https://www.encodeproject.org/files/ENCFF747FRP/@@download/ENCFF747FRP.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF284BYN bam unfiltered alignments ENCSR236UIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF747FRP 1887937626 ENCODE Processing Pipeline c323cb88c77247f10fde6f3897fb0c86 https://www.encodeproject.org/files/ENCFF284BYN/@@download/ENCFF284BYN.bam mm10 released insufficient read depth for broad peaks control ENCFF814DMW bam alignments ENCSR236UIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF747FRP 1391040425 ENCODE Processing Pipeline d1177c956a352e3b196903a1234ccf5e https://www.encodeproject.org/files/ENCFF814DMW/@@download/ENCFF814DMW.bam mm10 released insufficient read depth for broad peaks control ENCFF001KPD bam alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KPR 820159431 Bing Ren, UCSD 42b09efdf9c196fa88aabbc0a194e839 https://www.encodeproject.org/files/ENCFF001KPD/@@download/ENCFF001KPD.bam mm9 released low read length, low read depth ENCFF001KPF bam alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KPS 829225192 Bing Ren, UCSD 0307d21dcc9214cd355e3a3230c71b91 https://www.encodeproject.org/files/ENCFF001KPF/@@download/ENCFF001KPF.bam mm9 released low read length, low read depth ENCFF001KPI bigWig signal ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KPD, ENCFF001KPF 81238587 Bing Ren, UCSD 190cf540fef841e10e8206d90cbd01e1 https://www.encodeproject.org/files/ENCFF001KPI/@@download/ENCFF001KPI.bigWig mm9 released low read length, low read depth ENCFF001KPR fastq reads ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 877794843 Bing Ren, UCSD 0efb30e0740e12cbe44c180dd5f27800 https://www.encodeproject.org/files/ENCFF001KPR/@@download/ENCFF001KPR.fastq.gz Illumina Genome Analyzer II released low read length, low read depth ENCFF001KPS fastq reads ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 912121354 Bing Ren, UCSD 542911abfc6951dfaa9d7cdbf15ba0af https://www.encodeproject.org/files/ENCFF001KPS/@@download/ENCFF001KPS.fastq.gz Illumina Genome Analyzer II released low read length, low read depth ENCFF396NOQ bam unfiltered alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KPS, ENCFF806TVZ 1074811895 J. Michael Cherry, Stanford 88c644e29063aff51068c835de28eeb7 https://www.encodeproject.org/files/ENCFF396NOQ/@@download/ENCFF396NOQ.bam mm10-minimal archived low read length, low read depth ENCFF482HSX bam unfiltered alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KPR, ENCFF806TVZ 1040646511 J. Michael Cherry, Stanford 59702f8e4695817b76fcc6eb45299c62 https://www.encodeproject.org/files/ENCFF482HSX/@@download/ENCFF482HSX.bam mm10-minimal archived low read length, low read depth ENCFF545AEW bam alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPS, ENCFF018NEO 697336880 ENCODE Processing Pipeline bc85991ca16af327728e78c180fe077c https://www.encodeproject.org/files/ENCFF545AEW/@@download/ENCFF545AEW.bam mm10 released low read length, low read depth ENCFF161DPJ bam alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPR, ENCFF018NEO 681864507 ENCODE Processing Pipeline 0ef7014ad5d6075bfed1b6656f7f5d8b https://www.encodeproject.org/files/ENCFF161DPJ/@@download/ENCFF161DPJ.bam mm10 released low read length, low read depth ENCFF042RPX bam unfiltered alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KPR, ENCFF018NEO 1041926354 ENCODE Processing Pipeline 87b3b940a43e082a4734feab87ec9bac https://www.encodeproject.org/files/ENCFF042RPX/@@download/ENCFF042RPX.bam mm10 released low read length, low read depth ENCFF196HKI bam unfiltered alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KPS, ENCFF018NEO 1075937130 ENCODE Processing Pipeline 67183d76dd23f30b4a91578d73c07af2 https://www.encodeproject.org/files/ENCFF196HKI/@@download/ENCFF196HKI.bam mm10 released low read length, low read depth ENCFF334SSJ fastq reads ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2748936138 Bing Ren, UCSD ce516db0edb382c1ab34b388ea069228 SRA:SRR4235717 https://www.encodeproject.org/files/ENCFF334SSJ/@@download/ENCFF334SSJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF366TEJ/ released mild to moderate bottlenecking, moderate library complexity ENCFF910GVN fastq reads ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1573537103 Bing Ren, UCSD e04960d8670a51c9e606e7e966d3fa95 SRA:SRR4235716 https://www.encodeproject.org/files/ENCFF910GVN/@@download/ENCFF910GVN.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released mild to moderate bottlenecking, moderate library complexity ENCFF138YRJ bam unfiltered alignments ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF910GVN 2133599685 ENCODE Processing Pipeline 618bf958fe45cc2e159145bec523e098 https://www.encodeproject.org/files/ENCFF138YRJ/@@download/ENCFF138YRJ.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF753QAH bam unfiltered alignments ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF334SSJ 3409211539 ENCODE Processing Pipeline 9b2165b61209c3c1b4590ea6b68acb98 https://www.encodeproject.org/files/ENCFF753QAH/@@download/ENCFF753QAH.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF135OCE bam alignments ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF910GVN 1669901685 ENCODE Processing Pipeline 58d72ad68e8081b2d70928d4f5c9cba8 https://www.encodeproject.org/files/ENCFF135OCE/@@download/ENCFF135OCE.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF721KJH bam alignments ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF334SSJ 2323225956 ENCODE Processing Pipeline 4b7923d089dd179759afd3445441f021 https://www.encodeproject.org/files/ENCFF721KJH/@@download/ENCFF721KJH.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF647HJY bed narrowPeak peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF135OCE, ENCFF181QWR, ENCFF344GQQ 2205116 ENCODE Processing Pipeline d46d79cbb43ce35c3c0becaad3eac564 https://www.encodeproject.org/files/ENCFF647HJY/@@download/ENCFF647HJY.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF710PTH bed narrowPeak peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF135OCE, ENCFF181QWR, ENCFF344GQQ, ENCFF721KJH 3015491 ENCODE Processing Pipeline 93d3d8a7783e0e965039c0b242015d0f https://www.encodeproject.org/files/ENCFF710PTH/@@download/ENCFF710PTH.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF345DEG bed narrowPeak peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF721KJH 2602939 ENCODE Processing Pipeline fcd7a00eac81d80088b623d7f36f9143 https://www.encodeproject.org/files/ENCFF345DEG/@@download/ENCFF345DEG.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF282UPD bigBed narrowPeak peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF647HJY 6015852 ENCODE Processing Pipeline 2d5525e4247a457151df7353ac581227 https://www.encodeproject.org/files/ENCFF282UPD/@@download/ENCFF282UPD.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF137UEZ bigBed narrowPeak peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF710PTH 7855786 ENCODE Processing Pipeline d04343e1d9ef075dea50b7f60702271a https://www.encodeproject.org/files/ENCFF137UEZ/@@download/ENCFF137UEZ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF638MAO bigBed narrowPeak peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF345DEG 5409140 ENCODE Processing Pipeline 2451d8b276f76182c38378b84a141ed8 https://www.encodeproject.org/files/ENCFF638MAO/@@download/ENCFF638MAO.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF194LJL bigWig signal p-value ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF135OCE, ENCFF181QWR, ENCFF344GQQ 764680527 ENCODE Processing Pipeline eef367fbb53dec09b18c9a60429452bc https://www.encodeproject.org/files/ENCFF194LJL/@@download/ENCFF194LJL.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF032UDH bigWig signal p-value ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF721KJH 990564496 ENCODE Processing Pipeline 4f7fac3ac284a8c03a7ad489e4d4abe6 https://www.encodeproject.org/files/ENCFF032UDH/@@download/ENCFF032UDH.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF352FWC bigWig signal p-value ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF135OCE, ENCFF181QWR, ENCFF344GQQ, ENCFF721KJH 1296128670 ENCODE Processing Pipeline aa286b5538e3f4581fa76b219da4e172 https://www.encodeproject.org/files/ENCFF352FWC/@@download/ENCFF352FWC.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF207KAE bigWig fold change over control ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF721KJH 1099819817 ENCODE Processing Pipeline 2d24be07599ef7ab29525b1cac97bf6d https://www.encodeproject.org/files/ENCFF207KAE/@@download/ENCFF207KAE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF120WDY bigWig fold change over control ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF135OCE, ENCFF181QWR, ENCFF344GQQ 877449010 ENCODE Processing Pipeline 56b2c53b015c4d09e94854a6e49afd0a https://www.encodeproject.org/files/ENCFF120WDY/@@download/ENCFF120WDY.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF751ZHP bed narrowPeak replicated peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF345DEG, ENCFF647HJY, ENCFF710PTH 2100742 ENCODE Processing Pipeline af47919137d348ee9b399e22049e2756 https://www.encodeproject.org/files/ENCFF751ZHP/@@download/ENCFF751ZHP.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF782RAO bigWig fold change over control ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF135OCE, ENCFF181QWR, ENCFF344GQQ, ENCFF721KJH 1455669897 ENCODE Processing Pipeline 63ffcacd10061f3335535ee55434df92 https://www.encodeproject.org/files/ENCFF782RAO/@@download/ENCFF782RAO.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF510MLG bigBed narrowPeak replicated peaks ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF751ZHP 4424816 ENCODE Processing Pipeline 7508c9312c6761d071dfb923f8eb6046 https://www.encodeproject.org/files/ENCFF510MLG/@@download/ENCFF510MLG.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF536ZIH fastq reads ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1253252179 Bing Ren, UCSD 82d18dee9c83aa0ecfdb1651baf09257 SRA:SRR4235757 https://www.encodeproject.org/files/ENCFF536ZIH/@@download/ENCFF536ZIH.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released moderate library complexity, mild to moderate bottlenecking ENCFF114XWK fastq reads ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2664794480 Bing Ren, UCSD 3ac1ad3a4f86b8b4452d08de731923ac SRA:SRR4235756 https://www.encodeproject.org/files/ENCFF114XWK/@@download/ENCFF114XWK.fastq.gz Illumina HiSeq 4000 /files/ENCFF024PVD/ released moderate library complexity, mild to moderate bottlenecking ENCFF045IPK bam unfiltered alignments ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF536ZIH 1525179599 ENCODE Processing Pipeline 014b0ee94e3c8fc8f8ec0c644f089031 https://www.encodeproject.org/files/ENCFF045IPK/@@download/ENCFF045IPK.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF626VEX bam alignments ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF536ZIH 1070031101 ENCODE Processing Pipeline 47e79e4f602ce9145e9428e2dbc585c3 https://www.encodeproject.org/files/ENCFF626VEX/@@download/ENCFF626VEX.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF124UYX bam unfiltered alignments ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF114XWK 3022150921 ENCODE Processing Pipeline c820a2f05bafaae1f8ce9a7a6a535c46 https://www.encodeproject.org/files/ENCFF124UYX/@@download/ENCFF124UYX.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF960QQM bam alignments ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF114XWK 1862024473 ENCODE Processing Pipeline a9f44fcce949f6e2f326fce39f789581 https://www.encodeproject.org/files/ENCFF960QQM/@@download/ENCFF960QQM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF076CMD bigBed narrowPeak peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF890XRL 2674822 ENCODE Processing Pipeline 48e9ce834370b494fb59d4e1aaed6601 https://www.encodeproject.org/files/ENCFF076CMD/@@download/ENCFF076CMD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF726VJP bed narrowPeak peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF626VEX, ENCFF869IME 697889 ENCODE Processing Pipeline c092d5e0560a1186ee461c225ca4e048 https://www.encodeproject.org/files/ENCFF726VJP/@@download/ENCFF726VJP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF935ABK bigBed narrowPeak peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF726VJP 2166877 ENCODE Processing Pipeline 5aa5ad957083cd412ab8a282b6774388 https://www.encodeproject.org/files/ENCFF935ABK/@@download/ENCFF935ABK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF146WWW bigWig signal p-value ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF626VEX, ENCFF869IME 506874575 ENCODE Processing Pipeline f9c479d713592f005c803f3b75c95678 https://www.encodeproject.org/files/ENCFF146WWW/@@download/ENCFF146WWW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF208IPP bed narrowPeak peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF940GMW, ENCFF960QQM 872656 ENCODE Processing Pipeline 4ac485da9429bf72a5f31f08de3dadf5 https://www.encodeproject.org/files/ENCFF208IPP/@@download/ENCFF208IPP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF580SGT bigWig signal p-value ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF940GMW, ENCFF960QQM 549384008 ENCODE Processing Pipeline 0f293e6162157e4c0e03c05ae0ed93bc https://www.encodeproject.org/files/ENCFF580SGT/@@download/ENCFF580SGT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF890XRL bed narrowPeak peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF626VEX, ENCFF869IME, ENCFF940GMW, ENCFF960QQM 928629 ENCODE Processing Pipeline 60152e93856acccba46588e650a9a92b https://www.encodeproject.org/files/ENCFF890XRL/@@download/ENCFF890XRL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF058GWK bigBed narrowPeak peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF208IPP 2577612 ENCODE Processing Pipeline fd61b5a1ac098329eddc0bdfb39a91fe https://www.encodeproject.org/files/ENCFF058GWK/@@download/ENCFF058GWK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF035OJN bigWig fold change over control ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF940GMW, ENCFF960QQM 660027648 ENCODE Processing Pipeline e378cde9a49c4989272a15b415a6440d https://www.encodeproject.org/files/ENCFF035OJN/@@download/ENCFF035OJN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF675TVC bigWig fold change over control ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF626VEX, ENCFF869IME, ENCFF940GMW, ENCFF960QQM 1024224337 ENCODE Processing Pipeline 344037cbc7d6474352eedfa9b9284fb5 https://www.encodeproject.org/files/ENCFF675TVC/@@download/ENCFF675TVC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF493AOC bigWig signal p-value ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF626VEX, ENCFF869IME, ENCFF940GMW, ENCFF960QQM 872843180 ENCODE Processing Pipeline 72fc1c1cec414b7436e871528c245b49 https://www.encodeproject.org/files/ENCFF493AOC/@@download/ENCFF493AOC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF900BMQ bed narrowPeak replicated peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF208IPP, ENCFF726VJP, ENCFF890XRL 876974 ENCODE Processing Pipeline 0f84113f9b7f1b4d337a5e2aeae2cabf https://www.encodeproject.org/files/ENCFF900BMQ/@@download/ENCFF900BMQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF082HFT bigWig fold change over control ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF626VEX, ENCFF869IME 498331491 ENCODE Processing Pipeline 93c4f97438c0f059e334597c0414c24b https://www.encodeproject.org/files/ENCFF082HFT/@@download/ENCFF082HFT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF091IOT bigBed narrowPeak replicated peaks ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF900BMQ 1979457 ENCODE Processing Pipeline 650b12ab4d2805351a1bb9b66e272962 https://www.encodeproject.org/files/ENCFF091IOT/@@download/ENCFF091IOT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF002BGH fastq reads ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2073301293 Bing Ren, UCSD a82c90bc194d2eeb709c019e4b0b429c SRA:SRR3651462 https://www.encodeproject.org/files/ENCFF002BGH/@@download/ENCFF002BGH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUZ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth severe bottlenecking ENCFF002BHA fastq reads ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1832570480 Bing Ren, UCSD 63e817b52a545a55a7884086d6f2c72b SRA:SRR3651463 https://www.encodeproject.org/files/ENCFF002BHA/@@download/ENCFF002BHA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVA/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth severe bottlenecking ENCFF452NTG bam alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGH, ENCFF806TVZ 1019547624 ENCODE Processing Pipeline 2184621eba4cab7faa3eaee83ab2bef2 https://www.encodeproject.org/files/ENCFF452NTG/@@download/ENCFF452NTG.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF467UWM bam alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BHA, ENCFF806TVZ 798812526 ENCODE Processing Pipeline 7cd3f062b3adeaa5d447f0efbb33c079 https://www.encodeproject.org/files/ENCFF467UWM/@@download/ENCFF467UWM.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF588EKU bigBed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF918VZU 2641583 ENCODE Processing Pipeline 069c3921201537fa7557196c7aed5cd8 https://www.encodeproject.org/files/ENCFF588EKU/@@download/ENCFF588EKU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF769EFQ bed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF467UWM, ENCFF976TWF 937423 ENCODE Processing Pipeline df381fa64b4345d4f52210c8a9b8adfd https://www.encodeproject.org/files/ENCFF769EFQ/@@download/ENCFF769EFQ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF918VZU bed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF452NTG, ENCFF976TWF 836401 ENCODE Processing Pipeline c6ca34940ce15aa62d10da3b9baecacf https://www.encodeproject.org/files/ENCFF918VZU/@@download/ENCFF918VZU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF271DLE bed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF452NTG, ENCFF467UWM, ENCFF976TWF 666342 ENCODE Processing Pipeline 68b52e998b79b7255ef44a1222559329 https://www.encodeproject.org/files/ENCFF271DLE/@@download/ENCFF271DLE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF087NMI bigBed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF769EFQ 2427655 ENCODE Processing Pipeline df6ac2c9b8eb80d7e584791a041792a1 https://www.encodeproject.org/files/ENCFF087NMI/@@download/ENCFF087NMI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF379YOI bigBed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271DLE 2156331 ENCODE Processing Pipeline f03ee34d48231791a10d68903207e784 https://www.encodeproject.org/files/ENCFF379YOI/@@download/ENCFF379YOI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF391YJI bigWig signal p-value ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF467UWM, ENCFF976TWF 361883772 ENCODE Processing Pipeline dd32dac06a5b09ab1b44f57044799a6b https://www.encodeproject.org/files/ENCFF391YJI/@@download/ENCFF391YJI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF801CTK bigWig signal p-value ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF452NTG, ENCFF976TWF 402164979 ENCODE Processing Pipeline b4f3b95901bd57904fe21c7df36d3be3 https://www.encodeproject.org/files/ENCFF801CTK/@@download/ENCFF801CTK.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF820GWM bigWig signal p-value ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF452NTG, ENCFF467UWM, ENCFF976TWF 514946273 ENCODE Processing Pipeline 760bcbe4e79188a98cb35a47f1bc0e26 https://www.encodeproject.org/files/ENCFF820GWM/@@download/ENCFF820GWM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF525JML bigWig fold change over control ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF467UWM, ENCFF976TWF 315297847 ENCODE Processing Pipeline 179f10567b77d4eec6479d79eecf067e https://www.encodeproject.org/files/ENCFF525JML/@@download/ENCFF525JML.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF044WQU bigWig fold change over control ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF452NTG, ENCFF976TWF 362472721 ENCODE Processing Pipeline 9a6f25cd3e15ad6e1ca323d49fd20a49 https://www.encodeproject.org/files/ENCFF044WQU/@@download/ENCFF044WQU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF091LIC bigWig fold change over control ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF452NTG, ENCFF467UWM, ENCFF976TWF 570310317 ENCODE Processing Pipeline 3450dc8d1d5f8c512ab49aecd8b20582 https://www.encodeproject.org/files/ENCFF091LIC/@@download/ENCFF091LIC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF445ZPE bed narrowPeak replicated peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271DLE, ENCFF769EFQ, ENCFF918VZU 773900 ENCODE Processing Pipeline f7c49658e2c225c12c62e8f6df986855 https://www.encodeproject.org/files/ENCFF445ZPE/@@download/ENCFF445ZPE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF467GJA bigBed narrowPeak replicated peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF445ZPE 1902013 ENCODE Processing Pipeline c1e28074604e07218558a55a62c85c6d https://www.encodeproject.org/files/ENCFF467GJA/@@download/ENCFF467GJA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF398MND bam unfiltered alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BHA, ENCFF018NEO 1645010920 ENCODE Processing Pipeline dff355b1497d9aad6a46dbfaa050ed96 https://www.encodeproject.org/files/ENCFF398MND/@@download/ENCFF398MND.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF842LQC bam unfiltered alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGH, ENCFF018NEO 1838445748 ENCODE Processing Pipeline d949b32d409dd83c5e078565a9094ff5 https://www.encodeproject.org/files/ENCFF842LQC/@@download/ENCFF842LQC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF122NZU bam alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BHA, ENCFF018NEO 621218548 ENCODE Processing Pipeline 8032f99b7d5f81952b698db52ebabce1 https://www.encodeproject.org/files/ENCFF122NZU/@@download/ENCFF122NZU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF664RRL bam alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGH, ENCFF018NEO 802214902 ENCODE Processing Pipeline 198dcf9743ea3cd23686d5ce9ecbb83a https://www.encodeproject.org/files/ENCFF664RRL/@@download/ENCFF664RRL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF648GVN bed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF122NZU, ENCFF563TGK, ENCFF903TSE 902923 ENCODE Processing Pipeline 278167fe7f54a63dcadc6ba13dbad34e https://www.encodeproject.org/files/ENCFF648GVN/@@download/ENCFF648GVN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF139GLN bed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF122NZU, ENCFF563TGK, ENCFF664RRL, ENCFF903TSE 714213 ENCODE Processing Pipeline 3c37caef021bf2ec3640ce3c6a6434c1 https://www.encodeproject.org/files/ENCFF139GLN/@@download/ENCFF139GLN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF776VJM bed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF664RRL, ENCFF903TSE 845154 ENCODE Processing Pipeline 616a5c60b615f6e17774b0e5e6ca043b https://www.encodeproject.org/files/ENCFF776VJM/@@download/ENCFF776VJM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF301WXV bigBed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF648GVN 2335093 ENCODE Processing Pipeline 7fb05cf5ac28e123ecfd37e1b85b3054 https://www.encodeproject.org/files/ENCFF301WXV/@@download/ENCFF301WXV.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF997DSB bigBed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF776VJM 2658984 ENCODE Processing Pipeline 6a460ee0a9a91265e71d90756e53aed3 https://www.encodeproject.org/files/ENCFF997DSB/@@download/ENCFF997DSB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF392THT bigBed narrowPeak peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF139GLN 2284771 ENCODE Processing Pipeline c16d91a9c1b19fdeb0bbbf226b547dd7 https://www.encodeproject.org/files/ENCFF392THT/@@download/ENCFF392THT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF942UEC bigWig signal p-value ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF122NZU, ENCFF563TGK, ENCFF903TSE 335596112 ENCODE Processing Pipeline 79f12dc71196aac3e32f71c9c53e97d0 https://www.encodeproject.org/files/ENCFF942UEC/@@download/ENCFF942UEC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF616TTT bigWig signal p-value ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF664RRL, ENCFF903TSE 358208278 ENCODE Processing Pipeline 246f9f97ad17600c5a332609b2ba05ea https://www.encodeproject.org/files/ENCFF616TTT/@@download/ENCFF616TTT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF682HNX bigWig signal p-value ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF122NZU, ENCFF563TGK, ENCFF664RRL, ENCFF903TSE 509185401 ENCODE Processing Pipeline 4420616920bf77731c51cf8dfea3d53b https://www.encodeproject.org/files/ENCFF682HNX/@@download/ENCFF682HNX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF667JYQ bigWig fold change over control ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF122NZU, ENCFF563TGK, ENCFF903TSE 311212117 ENCODE Processing Pipeline 38f2f6606c2b88b5556c4b8502b32090 https://www.encodeproject.org/files/ENCFF667JYQ/@@download/ENCFF667JYQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF725FEI bigWig fold change over control ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF664RRL, ENCFF903TSE 356651338 ENCODE Processing Pipeline 93cf30454ac14cba0d5ed5c28421e5fb https://www.encodeproject.org/files/ENCFF725FEI/@@download/ENCFF725FEI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF061QXI bigWig fold change over control ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF122NZU, ENCFF563TGK, ENCFF664RRL, ENCFF903TSE 548661012 ENCODE Processing Pipeline 5ac8fdf6d781e863fdaa221594da55c6 https://www.encodeproject.org/files/ENCFF061QXI/@@download/ENCFF061QXI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF696AXB bed narrowPeak replicated peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF139GLN, ENCFF648GVN, ENCFF776VJM 775220 ENCODE Processing Pipeline 39a5c8d9a0782b64e29aa29e5baa56d3 https://www.encodeproject.org/files/ENCFF696AXB/@@download/ENCFF696AXB.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF511KAF bigBed narrowPeak replicated peaks ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF696AXB 1898464 ENCODE Processing Pipeline 9eaa0775687232c86f5c5ad83a50e5f1 https://www.encodeproject.org/files/ENCFF511KAF/@@download/ENCFF511KAF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF051PSQ fastq reads ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 852699723 Richard Myers, HAIB 8d7419104a40d88e536e1e9fa30c9d84 SRA:SRR5112332 https://www.encodeproject.org/files/ENCFF051PSQ/@@download/ENCFF051PSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF286ECX/ released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF797QNA fastq reads ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 936368635 Richard Myers, HAIB c1649907e4a03eaf4982f07ceadfd2b6 SRA:SRR5112333 https://www.encodeproject.org/files/ENCFF797QNA/@@download/ENCFF797QNA.fastq.gz Illumina HiSeq 2000 /files/ENCFF197BDN/ released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF590JMP bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF051PSQ, ENCFF806TVZ 677356279 ENCODE Processing Pipeline 1750444a2ef9fb845ac581152d2d2fe1 https://www.encodeproject.org/files/ENCFF590JMP/@@download/ENCFF590JMP.bam mm10-minimal archived antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF453ACX bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF797QNA, ENCFF806TVZ 744324139 ENCODE Processing Pipeline be394ee59a13554a68243789d4d017c5 https://www.encodeproject.org/files/ENCFF453ACX/@@download/ENCFF453ACX.bam mm10-minimal archived antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF281IER bam unfiltered alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF051PSQ 933980110 ENCODE Processing Pipeline ba9184901e0bbb7655e5311b461b0be4 https://www.encodeproject.org/files/ENCFF281IER/@@download/ENCFF281IER.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF296RQE bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF797QNA 744187819 ENCODE Processing Pipeline c64db4250d7d72fae588cef8104b13e9 https://www.encodeproject.org/files/ENCFF296RQE/@@download/ENCFF296RQE.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF563KAP bam unfiltered alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF797QNA 1023979108 ENCODE Processing Pipeline bb0160bccce784a1958a579afe68e51b https://www.encodeproject.org/files/ENCFF563KAP/@@download/ENCFF563KAP.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF844MYB bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF051PSQ 677244030 ENCODE Processing Pipeline 321923a573d1d8fd575f0e37f8780d3e https://www.encodeproject.org/files/ENCFF844MYB/@@download/ENCFF844MYB.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF205DDI bigWig signal p-value ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF363JGX, ENCFF844MYB 310849813 ENCODE Processing Pipeline 1f88210410a9be16005284ecf7b83b47 https://www.encodeproject.org/files/ENCFF205DDI/@@download/ENCFF205DDI.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF591LJF bigWig signal p-value ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF296RQE, ENCFF352PVF, ENCFF363JGX, ENCFF844MYB 595437959 ENCODE Processing Pipeline 9b951419f5884f44b27642e0ef9c30b8 https://www.encodeproject.org/files/ENCFF591LJF/@@download/ENCFF591LJF.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF704DPP bigWig fold change over control ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF363JGX, ENCFF844MYB 346612728 ENCODE Processing Pipeline bb227d6461528c2a7ea91d2b6f793c9d https://www.encodeproject.org/files/ENCFF704DPP/@@download/ENCFF704DPP.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF784VLV bigWig signal p-value ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF296RQE, ENCFF352PVF 327642675 ENCODE Processing Pipeline 8293e0361d46c4cca4844aebe66c5153 https://www.encodeproject.org/files/ENCFF784VLV/@@download/ENCFF784VLV.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF367NLZ bigWig fold change over control ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF296RQE, ENCFF352PVF 363215501 ENCODE Processing Pipeline dc09233d2c39872860f6e66013d88b1d https://www.encodeproject.org/files/ENCFF367NLZ/@@download/ENCFF367NLZ.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF184GHO bed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF296RQE, ENCFF352PVF 4602071 ENCODE Processing Pipeline 0304efff164cdd77ee0f38c0f6991d3b https://www.encodeproject.org/files/ENCFF184GHO/@@download/ENCFF184GHO.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF514IKI bed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF296RQE, ENCFF352PVF, ENCFF363JGX, ENCFF844MYB 5735264 ENCODE Processing Pipeline 66dfe8a85183dd10d99bfbeed71f964d https://www.encodeproject.org/files/ENCFF514IKI/@@download/ENCFF514IKI.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF787DRX bed narrowPeak optimal idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF184GHO, ENCFF514IKI, ENCFF547MET, ENCFF845YIG 300441 ENCODE Processing Pipeline 9d0f2b10155454b870c0e7d1d1b2b776 https://www.encodeproject.org/files/ENCFF787DRX/@@download/ENCFF787DRX.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF406NAB bigBed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF845YIG 10756393 ENCODE Processing Pipeline 53bafe9d3928c65d357028175f0832ea https://www.encodeproject.org/files/ENCFF406NAB/@@download/ENCFF406NAB.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF696JSM bigBed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF184GHO 10876772 ENCODE Processing Pipeline 0ad6d54a252e60124610ae060e7ac33c https://www.encodeproject.org/files/ENCFF696JSM/@@download/ENCFF696JSM.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF805ZNE bigBed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF514IKI 11394515 ENCODE Processing Pipeline 633182eb0905aaffc3368f78368cb021 https://www.encodeproject.org/files/ENCFF805ZNE/@@download/ENCFF805ZNE.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF845YIG bed narrowPeak peaks and background as input for IDR ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF363JGX, ENCFF844MYB 4589856 ENCODE Processing Pipeline 31cfc05b4e4102b4f8c47f51c79add16 https://www.encodeproject.org/files/ENCFF845YIG/@@download/ENCFF845YIG.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF427SVX bigBed narrowPeak conservative idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF544EQO 626463 ENCODE Processing Pipeline 9d68dce3afbe1473305419c0bcb6f950 https://www.encodeproject.org/files/ENCFF427SVX/@@download/ENCFF427SVX.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF549QHQ bigWig fold change over control ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF296RQE, ENCFF352PVF, ENCFF363JGX, ENCFF844MYB 738832427 ENCODE Processing Pipeline e3d7adb6256331562854b22840702a64 https://www.encodeproject.org/files/ENCFF549QHQ/@@download/ENCFF549QHQ.bigWig mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF544EQO bed narrowPeak conservative idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF184GHO, ENCFF514IKI, ENCFF547MET, ENCFF845YIG 278636 ENCODE Processing Pipeline 44fdcc30d0dbe91934147252949f0b4d https://www.encodeproject.org/files/ENCFF544EQO/@@download/ENCFF544EQO.bed.gz mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF138PST bigBed narrowPeak optimal idr thresholded peaks ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF787DRX 661563 ENCODE Processing Pipeline b0c9fc904c8fe82acb17c4e7395d1ab9 https://www.encodeproject.org/files/ENCFF138PST/@@download/ENCFF138PST.bigBed mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF126KYO fastq reads ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2394562129 Bing Ren, UCSD ef727039f615a5010663b3d7b43c1f0d SRA:SRR4235766 https://www.encodeproject.org/files/ENCFF126KYO/@@download/ENCFF126KYO.fastq.gz Illumina HiSeq 4000 released ENCFF814HQS fastq reads ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2365288253 Bing Ren, UCSD 48b0114134333e486d8262a668cc779d SRA:SRR4235767 https://www.encodeproject.org/files/ENCFF814HQS/@@download/ENCFF814HQS.fastq.gz Illumina HiSeq 4000 released ENCFF557WCA bam unfiltered alignments ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF126KYO 3277114369 ENCODE Processing Pipeline d1a9dfeca66c5b528dc3cb700c72e8db https://www.encodeproject.org/files/ENCFF557WCA/@@download/ENCFF557WCA.bam mm10 released ENCFF856BVR bam unfiltered alignments ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF814HQS 3328388751 ENCODE Processing Pipeline 468566d59fe78aaf9d4a4029dc9f778a https://www.encodeproject.org/files/ENCFF856BVR/@@download/ENCFF856BVR.bam mm10 released ENCFF778IFH bam alignments ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF126KYO 2429855724 ENCODE Processing Pipeline a439251e8c67a8f7fa58ca0b96ba8713 https://www.encodeproject.org/files/ENCFF778IFH/@@download/ENCFF778IFH.bam mm10 released ENCFF689YLF bam alignments ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF814HQS 2456765503 ENCODE Processing Pipeline 4a5de0a72988628528b0ca6bec53ea0b https://www.encodeproject.org/files/ENCFF689YLF/@@download/ENCFF689YLF.bam mm10 released ENCFF892KDP fastq reads ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2400569660 Bing Ren, UCSD b675a6634195f3a12dc7ac92c3e7a634 SRA:SRR4235599 https://www.encodeproject.org/files/ENCFF892KDP/@@download/ENCFF892KDP.fastq.gz Illumina HiSeq 4000 released ENCFF366TEJ fastq reads ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2994900939 Bing Ren, UCSD ff348b29be5c04ff8bb0462f8b3c1bb8 SRA:SRR4235600 https://www.encodeproject.org/files/ENCFF366TEJ/@@download/ENCFF366TEJ.fastq.gz Illumina HiSeq 4000 released ENCFF732UTF bam unfiltered alignments ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF892KDP 3380096263 ENCODE Processing Pipeline 819caf73885118f4844cc4edc8a948b8 https://www.encodeproject.org/files/ENCFF732UTF/@@download/ENCFF732UTF.bam mm10 released ENCFF049WZF bam unfiltered alignments ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF366TEJ 4044494978 ENCODE Processing Pipeline d11a6d999b27b183fdb516afc42d4be7 https://www.encodeproject.org/files/ENCFF049WZF/@@download/ENCFF049WZF.bam mm10 released ENCFF344GQQ bam alignments ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF892KDP 2494507891 ENCODE Processing Pipeline 7e2e4da6f774d1e7090ae4468088a688 https://www.encodeproject.org/files/ENCFF344GQQ/@@download/ENCFF344GQQ.bam mm10 released ENCFF181QWR bam alignments ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF366TEJ 2991473841 ENCODE Processing Pipeline f683b0a364334c5b045fb2d16251cf96 https://www.encodeproject.org/files/ENCFF181QWR/@@download/ENCFF181QWR.bam mm10 released ENCFF001ZSZ fastq reads ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1089332825 Bing Ren, UCSD 9aa685473a645b4f0de6b024734a8156 SRA:SRR3651287 https://www.encodeproject.org/files/ENCFF001ZSZ/@@download/ENCFF001ZSZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF001ZTC fastq reads ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1101475043 Bing Ren, UCSD 299b5ea1466e8143dae70d457ece10b3 SRA:SRR3651285 https://www.encodeproject.org/files/ENCFF001ZTC/@@download/ENCFF001ZTC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF497HCD bam alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSZ, ENCFF806TVZ 810238327 ENCODE Processing Pipeline 02ed14043c58a160e9cbad655fd5218f https://www.encodeproject.org/files/ENCFF497HCD/@@download/ENCFF497HCD.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF593DDG fastq reads ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 75935119 Bing Ren, UCSD f9cdb1ef80b6bd4d65885c8484f3f632 SRA:SRR3651286 https://www.encodeproject.org/files/ENCFF593DDG/@@download/ENCFF593DDG.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/, /files/ENCFF825VCS/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF043NDN bam alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTC, ENCFF593DDG, ENCFF806TVZ 482088959 ENCODE Processing Pipeline ea6f2d9075903db0aa5b009601b7451a https://www.encodeproject.org/files/ENCFF043NDN/@@download/ENCFF043NDN.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF439HZV bed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF043NDN, ENCFF204GFG, ENCFF695ODM 869879 ENCODE Processing Pipeline b735e78f9df7ee912623fe5165927255 https://www.encodeproject.org/files/ENCFF439HZV/@@download/ENCFF439HZV.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF140WFO bed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF043NDN, ENCFF204GFG, ENCFF497HCD, ENCFF695ODM 710237 ENCODE Processing Pipeline a03c103ef8990647ef99f74010bffb8c https://www.encodeproject.org/files/ENCFF140WFO/@@download/ENCFF140WFO.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF573CCA bigBed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439HZV 2199522 ENCODE Processing Pipeline ea5ecd18fd1da9c70e9a1976da8a62cf https://www.encodeproject.org/files/ENCFF573CCA/@@download/ENCFF573CCA.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF777VXY bed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF497HCD, ENCFF695ODM 795164 ENCODE Processing Pipeline 2343c97d45905436725a63a69985bead https://www.encodeproject.org/files/ENCFF777VXY/@@download/ENCFF777VXY.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF199KUJ bigBed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF777VXY 2508032 ENCODE Processing Pipeline 6f15e3f7816eb743ea6510cec209f76c https://www.encodeproject.org/files/ENCFF199KUJ/@@download/ENCFF199KUJ.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF824UKA bigBed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF140WFO 2275630 ENCODE Processing Pipeline 5f6bd81c582c4e667f57caa97a0bdaeb https://www.encodeproject.org/files/ENCFF824UKA/@@download/ENCFF824UKA.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF700SJQ bigWig signal p-value ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF043NDN, ENCFF204GFG, ENCFF695ODM 303143065 ENCODE Processing Pipeline 02b3e2b91a57f196250e38ade6f74035 https://www.encodeproject.org/files/ENCFF700SJQ/@@download/ENCFF700SJQ.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF845FHM bigWig signal p-value ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF497HCD, ENCFF695ODM 363677265 ENCODE Processing Pipeline 71d08c4b85d8c1063f8aa0b29c7dac38 https://www.encodeproject.org/files/ENCFF845FHM/@@download/ENCFF845FHM.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF862XLG bigWig signal p-value ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF043NDN, ENCFF204GFG, ENCFF497HCD, ENCFF695ODM 465194606 ENCODE Processing Pipeline 2bd6e856121ed157a94ce9bde1e14d9f https://www.encodeproject.org/files/ENCFF862XLG/@@download/ENCFF862XLG.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF045ACO bigWig fold change over control ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF043NDN, ENCFF204GFG, ENCFF695ODM 206173301 ENCODE Processing Pipeline cd0e671f409acc0281044cf8c255cc94 https://www.encodeproject.org/files/ENCFF045ACO/@@download/ENCFF045ACO.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF115MDA bigBed narrowPeak replicated peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF150FVO 1917633 ENCODE Processing Pipeline 29045094369a1f39fabe85b0cf111592 https://www.encodeproject.org/files/ENCFF115MDA/@@download/ENCFF115MDA.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF832LQW bigWig fold change over control ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF497HCD, ENCFF695ODM 307702567 ENCODE Processing Pipeline 866a9b007a5d4a06364e7d75ffd6a5c7 https://www.encodeproject.org/files/ENCFF832LQW/@@download/ENCFF832LQW.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF751HWL bigWig fold change over control ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF043NDN, ENCFF204GFG, ENCFF497HCD, ENCFF695ODM 448603972 ENCODE Processing Pipeline 67486c4869138fa34c430fbe6514ee12 https://www.encodeproject.org/files/ENCFF751HWL/@@download/ENCFF751HWL.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF150FVO bed narrowPeak replicated peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF140WFO, ENCFF439HZV, ENCFF777VXY 777914 ENCODE Processing Pipeline a44a324e532284d42419fb4fa90043c8 https://www.encodeproject.org/files/ENCFF150FVO/@@download/ENCFF150FVO.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF671RMT bam unfiltered alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSZ, ENCFF018NEO 1315036387 ENCODE Processing Pipeline de82a629718560b822c47b987767d96c https://www.encodeproject.org/files/ENCFF671RMT/@@download/ENCFF671RMT.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF089SYA bam unfiltered alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTC, ENCFF018NEO, ENCFF593DDG 1345971903 ENCODE Processing Pipeline 13ecc988d8abeeb5ee92e8d866c5b014 https://www.encodeproject.org/files/ENCFF089SYA/@@download/ENCFF089SYA.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF420QXG bam alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSZ, ENCFF018NEO 810119433 ENCODE Processing Pipeline d6fdc2fe924634791ee465907baa315a https://www.encodeproject.org/files/ENCFF420QXG/@@download/ENCFF420QXG.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF106DNK bam alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTC, ENCFF018NEO, ENCFF593DDG 463043541 ENCODE Processing Pipeline bd81004a68cb3a48a2a6334ec4cfa915 https://www.encodeproject.org/files/ENCFF106DNK/@@download/ENCFF106DNK.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF721ZKH bed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF106DNK, ENCFF631YQS, ENCFF658BBR 870343 ENCODE Processing Pipeline 625e6ebc68b0d095e470fc32d8212e6c https://www.encodeproject.org/files/ENCFF721ZKH/@@download/ENCFF721ZKH.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF382KXP bed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF420QXG, ENCFF631YQS, ENCFF658BBR 797048 ENCODE Processing Pipeline fe240edc1b110c9b327742bac3db49ae https://www.encodeproject.org/files/ENCFF382KXP/@@download/ENCFF382KXP.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF162TBR bed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF106DNK, ENCFF420QXG, ENCFF631YQS, ENCFF658BBR 712431 ENCODE Processing Pipeline 98fa15e580fdf751dd8be1132a24c92d https://www.encodeproject.org/files/ENCFF162TBR/@@download/ENCFF162TBR.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF713DZX bigBed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF382KXP 2512199 ENCODE Processing Pipeline e244ab3529e439321bf0a2294e5892b5 https://www.encodeproject.org/files/ENCFF713DZX/@@download/ENCFF713DZX.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF947CAP bigBed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF721ZKH 2201612 ENCODE Processing Pipeline 491b557d0f6605b3036fd4e779f005a8 https://www.encodeproject.org/files/ENCFF947CAP/@@download/ENCFF947CAP.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF189VWD bigBed narrowPeak peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF162TBR 2280953 ENCODE Processing Pipeline 1e8b3602c2bbd200e058b82a735d63d0 https://www.encodeproject.org/files/ENCFF189VWD/@@download/ENCFF189VWD.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF136WUE bigWig signal p-value ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF106DNK, ENCFF631YQS, ENCFF658BBR 286953861 ENCODE Processing Pipeline c65bc09ed4127b9ebcb8887cd359cf6f https://www.encodeproject.org/files/ENCFF136WUE/@@download/ENCFF136WUE.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF405KXQ bigWig signal p-value ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF420QXG, ENCFF631YQS, ENCFF658BBR 406115509 ENCODE Processing Pipeline 4da4c3b47ea6c6f45b00595beac4bf00 https://www.encodeproject.org/files/ENCFF405KXQ/@@download/ENCFF405KXQ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF939MPC bigWig signal p-value ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF106DNK, ENCFF420QXG, ENCFF631YQS, ENCFF658BBR 465287266 ENCODE Processing Pipeline 497ba7a30a1699f04c92581b492069c6 https://www.encodeproject.org/files/ENCFF939MPC/@@download/ENCFF939MPC.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF876VPA bigWig fold change over control ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF106DNK, ENCFF631YQS, ENCFF658BBR 204536100 ENCODE Processing Pipeline 4eb78ff4ae3e897d446c669234cf6862 https://www.encodeproject.org/files/ENCFF876VPA/@@download/ENCFF876VPA.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF512SOA bigWig fold change over control ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF420QXG, ENCFF631YQS, ENCFF658BBR 308312393 ENCODE Processing Pipeline af39639d489559cd4fc25f6b4940bace https://www.encodeproject.org/files/ENCFF512SOA/@@download/ENCFF512SOA.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF880WPO bigWig fold change over control ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF106DNK, ENCFF420QXG, ENCFF631YQS, ENCFF658BBR 449925028 ENCODE Processing Pipeline fec378e1ac310f6947cc1347b4f828fb https://www.encodeproject.org/files/ENCFF880WPO/@@download/ENCFF880WPO.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF405JZZ bed narrowPeak replicated peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF162TBR, ENCFF382KXP, ENCFF721ZKH 769563 ENCODE Processing Pipeline 3a6f0e1d5f01106cc5dafb34a1d4e182 https://www.encodeproject.org/files/ENCFF405JZZ/@@download/ENCFF405JZZ.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF486VPU bigBed narrowPeak replicated peaks ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF405JZZ 1898399 ENCODE Processing Pipeline 038f4039dd980326130732f974672bd5 https://www.encodeproject.org/files/ENCFF486VPU/@@download/ENCFF486VPU.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF076IRY fastq reads ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2798499491 Bing Ren, UCSD 80f51c73670a0b46bdec077796fd7b3f SRA:SRR3653178 https://www.encodeproject.org/files/ENCFF076IRY/@@download/ENCFF076IRY.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF879XFV fastq reads ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3227336531 Bing Ren, UCSD 864bd5cdf4f4f2d9133fc0eb07b1ec3a SRA:SRR3653181 https://www.encodeproject.org/files/ENCFF879XFV/@@download/ENCFF879XFV.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF582LOU bam alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF879XFV 2622596253 ENCODE Processing Pipeline 06839582766a527c808a68214b04633d https://www.encodeproject.org/files/ENCFF582LOU/@@download/ENCFF582LOU.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF245YVK bam alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF076IRY, ENCFF806TVZ 2312359748 ENCODE Processing Pipeline 8eee11926d727272e1df34e3bcea1932 https://www.encodeproject.org/files/ENCFF245YVK/@@download/ENCFF245YVK.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF155LYM fastq reads ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 239802972 Bing Ren, UCSD f2ec8341e1069f04d53b948b65dd7272 SRA:SRR3653179 https://www.encodeproject.org/files/ENCFF155LYM/@@download/ENCFF155LYM.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF947EDP fastq reads ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 118802732 Bing Ren, UCSD 19c12cd00859f0ec1c31aaa969b1fab2 SRA:SRR3653182 https://www.encodeproject.org/files/ENCFF947EDP/@@download/ENCFF947EDP.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF856YXG fastq reads ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 270931576 Bing Ren, UCSD d74188141dbb333e08f8d7290afc1a43 SRA:SRR3653180 https://www.encodeproject.org/files/ENCFF856YXG/@@download/ENCFF856YXG.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF245OIS bam alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF879XFV, ENCFF947EDP 2758313492 ENCODE Processing Pipeline bb8c3a3d5387152824e941f06ddbb9e9 https://www.encodeproject.org/files/ENCFF245OIS/@@download/ENCFF245OIS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF911TKL bam unfiltered alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF879XFV, ENCFF947EDP 4110558510 ENCODE Processing Pipeline f4a50071a777b25e96a851952282abe2 https://www.encodeproject.org/files/ENCFF911TKL/@@download/ENCFF911TKL.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF389YBT bam alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF076IRY, ENCFF155LYM, ENCFF856YXG 2852644827 ENCODE Processing Pipeline b733474cd6416cb373be17b7ac168fa2 https://www.encodeproject.org/files/ENCFF389YBT/@@download/ENCFF389YBT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF514ZTX bam unfiltered alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF076IRY, ENCFF155LYM, ENCFF856YXG 4187977939 ENCODE Processing Pipeline 8ac66300e5878e3bedf264844c6fcff5 https://www.encodeproject.org/files/ENCFF514ZTX/@@download/ENCFF514ZTX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF493BXI bam alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF890PHI 2056706130 ENCODE Processing Pipeline ee44f1754ca678986909de3d1f764639 https://www.encodeproject.org/files/ENCFF493BXI/@@download/ENCFF493BXI.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF330HOT bam alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF586JAL, ENCFF806TVZ 1966113154 ENCODE Processing Pipeline e4c2cce6e7ce9b80528c49d3b2238cec https://www.encodeproject.org/files/ENCFF330HOT/@@download/ENCFF330HOT.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF586JAL fastq reads ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2311643390 Bing Ren, UCSD 85c6c0c9f1d50187032639caa4684a50 SRA:SRR3652949 https://www.encodeproject.org/files/ENCFF586JAL/@@download/ENCFF586JAL.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF890PHI fastq reads ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2416988087 Bing Ren, UCSD 9b75c3d424edf59fdcc9668a87c0f270 SRA:SRR3652947 https://www.encodeproject.org/files/ENCFF890PHI/@@download/ENCFF890PHI.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF974QSS fastq reads ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 428429775 Bing Ren, UCSD f0233e83a341e1fa6ba10a22e81f510f SRA:SRR3652948 https://www.encodeproject.org/files/ENCFF974QSS/@@download/ENCFF974QSS.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF573WFQ fastq reads ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 834827890 Bing Ren, UCSD 68b4629fc7f7ec59afa6af4bc25616d8 SRA:SRR3652950 https://www.encodeproject.org/files/ENCFF573WFQ/@@download/ENCFF573WFQ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF117QRC bam unfiltered alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF573WFQ, ENCFF586JAL 4059656649 ENCODE Processing Pipeline 26accd9040cb3afa83f455e551fb93ba https://www.encodeproject.org/files/ENCFF117QRC/@@download/ENCFF117QRC.bam mm10 released sequencing runs labeled as technical replicates ENCFF893IOJ bam alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF890PHI, ENCFF974QSS 2514805851 ENCODE Processing Pipeline 375fd17961df577a17fd9605cbb6cafa https://www.encodeproject.org/files/ENCFF893IOJ/@@download/ENCFF893IOJ.bam mm10 released sequencing runs labeled as technical replicates ENCFF248PGK bam unfiltered alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF890PHI, ENCFF974QSS 3613892781 ENCODE Processing Pipeline 5590edfdad9b30da4a6bc84a493b69d1 https://www.encodeproject.org/files/ENCFF248PGK/@@download/ENCFF248PGK.bam mm10 released sequencing runs labeled as technical replicates ENCFF279URC bam alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF573WFQ, ENCFF586JAL 2813654969 ENCODE Processing Pipeline fa7bd58daf95d2dced0618c425d7d4ae https://www.encodeproject.org/files/ENCFF279URC/@@download/ENCFF279URC.bam mm10 released sequencing runs labeled as technical replicates ENCFF854EKF fastq reads ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2822290746 Bing Ren, UCSD 2d9fdfcaa3d0f225ae81b5631a577abb SRA:SRR4235759 https://www.encodeproject.org/files/ENCFF854EKF/@@download/ENCFF854EKF.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released mild to moderate bottlenecking ENCFF410JWH fastq reads ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2582136479 Bing Ren, UCSD 51b6b8f32c89a60771ad715b865ed1c1 SRA:SRR4235758 https://www.encodeproject.org/files/ENCFF410JWH/@@download/ENCFF410JWH.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released mild to moderate bottlenecking ENCFF880HSO bam unfiltered alignments ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF410JWH 3352408995 ENCODE Processing Pipeline b86df36448f25bc57d7fa85acd754ac3 https://www.encodeproject.org/files/ENCFF880HSO/@@download/ENCFF880HSO.bam mm10 released mild to moderate bottlenecking ENCFF392EVY bam unfiltered alignments ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF854EKF 3682288632 ENCODE Processing Pipeline aaf3585ca2658cc0433b0071459f116c https://www.encodeproject.org/files/ENCFF392EVY/@@download/ENCFF392EVY.bam mm10 released mild to moderate bottlenecking ENCFF053DHE bam alignments ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF410JWH 2620580470 ENCODE Processing Pipeline bc7eb67069f1a5e1ebac7b03bdfb5f3b https://www.encodeproject.org/files/ENCFF053DHE/@@download/ENCFF053DHE.bam mm10 released mild to moderate bottlenecking ENCFF600FIR bam alignments ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF854EKF 2794806637 ENCODE Processing Pipeline 3cb11e244c7baca8042ce4d636b2bd3d https://www.encodeproject.org/files/ENCFF600FIR/@@download/ENCFF600FIR.bam mm10 released mild to moderate bottlenecking ENCFF374GJI bed narrowPeak peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF600FIR, ENCFF887RXR 3811171 ENCODE Processing Pipeline 1794e811ec552f8af6ab25473cba2a32 https://www.encodeproject.org/files/ENCFF374GJI/@@download/ENCFF374GJI.bed.gz mm10 released mild to moderate bottlenecking ENCFF134LBS bed narrowPeak peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF053DHE, ENCFF128QRQ, ENCFF600FIR, ENCFF887RXR 4208262 ENCODE Processing Pipeline 92cc591f4f71980b50694972bb09ee43 https://www.encodeproject.org/files/ENCFF134LBS/@@download/ENCFF134LBS.bed.gz mm10 released mild to moderate bottlenecking ENCFF451ZXH bed narrowPeak peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF053DHE, ENCFF887RXR 3408368 ENCODE Processing Pipeline 4a28c82c9632b4d2064bcfb7635837ae https://www.encodeproject.org/files/ENCFF451ZXH/@@download/ENCFF451ZXH.bed.gz mm10 released mild to moderate bottlenecking ENCFF407MVH bigBed narrowPeak peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF374GJI 9913935 ENCODE Processing Pipeline 3c264bbbea80335f61db643728572d59 https://www.encodeproject.org/files/ENCFF407MVH/@@download/ENCFF407MVH.bigBed mm10 released mild to moderate bottlenecking ENCFF755NDV bigBed narrowPeak peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF451ZXH 8893700 ENCODE Processing Pipeline ccb941e3435aee797f4a616d1999ad61 https://www.encodeproject.org/files/ENCFF755NDV/@@download/ENCFF755NDV.bigBed mm10 released mild to moderate bottlenecking ENCFF693NTW bigWig signal p-value ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF600FIR, ENCFF887RXR 1015765645 ENCODE Processing Pipeline ecfd636d729e221544eacba963d70e33 https://www.encodeproject.org/files/ENCFF693NTW/@@download/ENCFF693NTW.bigWig mm10 released mild to moderate bottlenecking ENCFF034XTI bigBed narrowPeak peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF134LBS 10665253 ENCODE Processing Pipeline 877522b519371be5e8d1dafc6926b627 https://www.encodeproject.org/files/ENCFF034XTI/@@download/ENCFF034XTI.bigBed mm10 released mild to moderate bottlenecking ENCFF343DXX bigWig signal p-value ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF053DHE, ENCFF887RXR 1033062471 ENCODE Processing Pipeline ff13ec9816997fa36e738252f0782eb6 https://www.encodeproject.org/files/ENCFF343DXX/@@download/ENCFF343DXX.bigWig mm10 released mild to moderate bottlenecking ENCFF136AKD bigWig signal p-value ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF053DHE, ENCFF128QRQ, ENCFF600FIR, ENCFF887RXR 1680851887 ENCODE Processing Pipeline 9e746adef2073d114c48e371d49fd41f https://www.encodeproject.org/files/ENCFF136AKD/@@download/ENCFF136AKD.bigWig mm10 released mild to moderate bottlenecking ENCFF877JIK bigWig fold change over control ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF053DHE, ENCFF887RXR 1030980025 ENCODE Processing Pipeline 41e24af4def35dd13a3a2f7f334ca2d9 https://www.encodeproject.org/files/ENCFF877JIK/@@download/ENCFF877JIK.bigWig mm10 released mild to moderate bottlenecking ENCFF239OPG bigWig fold change over control ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF600FIR, ENCFF887RXR 1335146880 ENCODE Processing Pipeline 4852d4b9b440cac31fc068206fa7a353 https://www.encodeproject.org/files/ENCFF239OPG/@@download/ENCFF239OPG.bigWig mm10 released mild to moderate bottlenecking ENCFF778ZYF bigBed narrowPeak replicated peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF043CBA 6617277 ENCODE Processing Pipeline 6c65b167ddf0ffba2b5598554e47bc3c https://www.encodeproject.org/files/ENCFF778ZYF/@@download/ENCFF778ZYF.bigBed mm10 released mild to moderate bottlenecking ENCFF513MGM bigWig fold change over control ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF053DHE, ENCFF128QRQ, ENCFF600FIR, ENCFF887RXR 1729702508 ENCODE Processing Pipeline 6d1ff8650ca025326f2fa178cc7c3a2a https://www.encodeproject.org/files/ENCFF513MGM/@@download/ENCFF513MGM.bigWig mm10 released mild to moderate bottlenecking ENCFF043CBA bed narrowPeak replicated peaks ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF134LBS, ENCFF374GJI, ENCFF451ZXH 3390117 ENCODE Processing Pipeline 841ff9e8eadf36f52c2f22af9c4b72db https://www.encodeproject.org/files/ENCFF043CBA/@@download/ENCFF043CBA.bed.gz mm10 released mild to moderate bottlenecking ENCFF821LPZ fastq reads ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1670565442 Bing Ren, UCSD 984f28ff7d70529ae1f1fdb48f747c50 SRA:SRR3653215 https://www.encodeproject.org/files/ENCFF821LPZ/@@download/ENCFF821LPZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF176UWV fastq reads ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1675495099 Bing Ren, UCSD fcfe4586c0fd15089a66797540699e49 SRA:SRR3653214 https://www.encodeproject.org/files/ENCFF176UWV/@@download/ENCFF176UWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released mild to moderate bottlenecking, inconsistent platforms ENCFF646XWJ bam alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF821LPZ 1364248932 ENCODE Processing Pipeline 23f9c1ef2ded4484a8e737bff089d4b5 https://www.encodeproject.org/files/ENCFF646XWJ/@@download/ENCFF646XWJ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF681DHD bam alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF176UWV, ENCFF806TVZ 1247584990 ENCODE Processing Pipeline e1711b38515675086cb7d3b0025cf47f https://www.encodeproject.org/files/ENCFF681DHD/@@download/ENCFF681DHD.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF157TAR bed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF681DHD 1496061 ENCODE Processing Pipeline 385f9161eda4db88e5cfd1fc49cee862 https://www.encodeproject.org/files/ENCFF157TAR/@@download/ENCFF157TAR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF080ZHO bigBed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF157TAR 4267765 ENCODE Processing Pipeline d21f145a13d04e0fadec15c802ed4ef2 https://www.encodeproject.org/files/ENCFF080ZHO/@@download/ENCFF080ZHO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF031MRU bed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF646XWJ, ENCFF949WTQ 1521380 ENCODE Processing Pipeline fbabe1880ca3a32e9584b9d0b1f23622 https://www.encodeproject.org/files/ENCFF031MRU/@@download/ENCFF031MRU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF963FGS bigBed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF438NDX 5091099 ENCODE Processing Pipeline 1b103405691d54f92071ab6f23ef17f7 https://www.encodeproject.org/files/ENCFF963FGS/@@download/ENCFF963FGS.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF438NDX bed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF646XWJ, ENCFF681DHD, ENCFF949WTQ 1837995 ENCODE Processing Pipeline 29ce16797439710e1796104d5bdb38cb https://www.encodeproject.org/files/ENCFF438NDX/@@download/ENCFF438NDX.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF881KUL bigBed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031MRU 4378061 ENCODE Processing Pipeline 9dbe9a27d02e79ced34dcbc24e25ae7c https://www.encodeproject.org/files/ENCFF881KUL/@@download/ENCFF881KUL.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF719XPQ bigWig signal p-value ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF681DHD 413240616 ENCODE Processing Pipeline 4ff5496b1336db404afceec47a44ecf0 https://www.encodeproject.org/files/ENCFF719XPQ/@@download/ENCFF719XPQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF418MZQ bigWig signal p-value ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF646XWJ, ENCFF949WTQ 576171578 ENCODE Processing Pipeline 954a3be70e23827998afb4d99dfc199e https://www.encodeproject.org/files/ENCFF418MZQ/@@download/ENCFF418MZQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF810HVX bigWig signal p-value ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF646XWJ, ENCFF681DHD, ENCFF949WTQ 1058056320 ENCODE Processing Pipeline 5756554679141d1af5655867d4cbea71 https://www.encodeproject.org/files/ENCFF810HVX/@@download/ENCFF810HVX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF577DNL bigWig fold change over control ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF681DHD 511178634 ENCODE Processing Pipeline 92f4ba0fb9a695c4fba2497f32a2cfe6 https://www.encodeproject.org/files/ENCFF577DNL/@@download/ENCFF577DNL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF336JOA bigWig fold change over control ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF646XWJ, ENCFF949WTQ 587899919 ENCODE Processing Pipeline 1bc8c958b0a2b725d84aabdf08d759c0 https://www.encodeproject.org/files/ENCFF336JOA/@@download/ENCFF336JOA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF993NMS bed narrowPeak replicated peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031MRU, ENCFF157TAR, ENCFF438NDX 1524624 ENCODE Processing Pipeline 30504f0b4c12c53986a450b6d5cf0305 https://www.encodeproject.org/files/ENCFF993NMS/@@download/ENCFF993NMS.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF040FBL bigWig fold change over control ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF646XWJ, ENCFF681DHD, ENCFF949WTQ 1046969729 ENCODE Processing Pipeline c033d31ccd6de7051bd5392adc8696ab https://www.encodeproject.org/files/ENCFF040FBL/@@download/ENCFF040FBL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF595JTH bigBed narrowPeak replicated peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF993NMS 3236347 ENCODE Processing Pipeline f5971dc65813c5acfc2d9577087639c5 https://www.encodeproject.org/files/ENCFF595JTH/@@download/ENCFF595JTH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF117SAH bam unfiltered alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF176UWV 1955711249 ENCODE Processing Pipeline 84d044bbe23760350e0aef956b4cc984 https://www.encodeproject.org/files/ENCFF117SAH/@@download/ENCFF117SAH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF499WHI bam unfiltered alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF821LPZ 1990604878 ENCODE Processing Pipeline 1663c560a928581bf020bd0afa20d236 https://www.encodeproject.org/files/ENCFF499WHI/@@download/ENCFF499WHI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF561MSI bam alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF176UWV 1247346107 ENCODE Processing Pipeline 0cba3167e4b089988f54e766470ee9a5 https://www.encodeproject.org/files/ENCFF561MSI/@@download/ENCFF561MSI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF497ZYH bam alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF821LPZ 1363941363 ENCODE Processing Pipeline f2d736c144e5bacd0ba339ea887c625e https://www.encodeproject.org/files/ENCFF497ZYH/@@download/ENCFF497ZYH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF364ZHQ bed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF497ZYH, ENCFF561MSI 1876123 ENCODE Processing Pipeline 14eb0ce991c5a281f139165fd98bcef6 https://www.encodeproject.org/files/ENCFF364ZHQ/@@download/ENCFF364ZHQ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF311FBS bed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF561MSI 1602681 ENCODE Processing Pipeline 581e3f94b74d32a1aa302f977085bd68 https://www.encodeproject.org/files/ENCFF311FBS/@@download/ENCFF311FBS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF572KBE bigBed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF110BHT 4533797 ENCODE Processing Pipeline 64368747285c6d85f387a36a3cbcc2fa https://www.encodeproject.org/files/ENCFF572KBE/@@download/ENCFF572KBE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF110BHT bed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF497ZYH 1579227 ENCODE Processing Pipeline 8c5a31e775bd0762b59011b424d57d8b https://www.encodeproject.org/files/ENCFF110BHT/@@download/ENCFF110BHT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF681LVY bigBed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF311FBS 4548125 ENCODE Processing Pipeline 4ad292dcae7b7c72884acbc8fd6a9dc4 https://www.encodeproject.org/files/ENCFF681LVY/@@download/ENCFF681LVY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF867KFQ bigBed narrowPeak peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF364ZHQ 5191898 ENCODE Processing Pipeline 28e530e25611e6c2ad26db554570c1f9 https://www.encodeproject.org/files/ENCFF867KFQ/@@download/ENCFF867KFQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF273JYO bigWig signal p-value ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF561MSI 555506665 ENCODE Processing Pipeline 2e26aa5ebbc6929b26ee48063a9e3574 https://www.encodeproject.org/files/ENCFF273JYO/@@download/ENCFF273JYO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF462JAJ bigWig signal p-value ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF497ZYH 616810254 ENCODE Processing Pipeline 1715508ed0c908a07e61fe119b4219a4 https://www.encodeproject.org/files/ENCFF462JAJ/@@download/ENCFF462JAJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF542FOH bigWig signal p-value ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF497ZYH, ENCFF561MSI 1058028282 ENCODE Processing Pipeline 68905b673effc6e7029f56c4bccdd204 https://www.encodeproject.org/files/ENCFF542FOH/@@download/ENCFF542FOH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF163NQB bigWig fold change over control ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF561MSI 617710507 ENCODE Processing Pipeline 4bc8bebfc84c5621cba88313984a696b https://www.encodeproject.org/files/ENCFF163NQB/@@download/ENCFF163NQB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF704JYE bigWig fold change over control ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF497ZYH 665813487 ENCODE Processing Pipeline 7455454c03c64dfcf6c6a60470556932 https://www.encodeproject.org/files/ENCFF704JYE/@@download/ENCFF704JYE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF018LWM bigWig fold change over control ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF497ZYH, ENCFF561MSI 1261542383 ENCODE Processing Pipeline 7782879afa3c4a4ece577e8c175f277e https://www.encodeproject.org/files/ENCFF018LWM/@@download/ENCFF018LWM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF399WYR bed narrowPeak replicated peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF110BHT, ENCFF311FBS, ENCFF364ZHQ 1602100 ENCODE Processing Pipeline 143a32f946ef295d5e471a69e90c3aee https://www.encodeproject.org/files/ENCFF399WYR/@@download/ENCFF399WYR.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF201HCN bigBed narrowPeak replicated peaks ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF399WYR 3351833 ENCODE Processing Pipeline 34023c2855e2157007c904f89aa2cf84 https://www.encodeproject.org/files/ENCFF201HCN/@@download/ENCFF201HCN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF278VQW fastq reads ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2370403808 Bing Ren, UCSD bc4f22882faf1da5da84eda99ac485d1 SRA:SRR4235656 https://www.encodeproject.org/files/ENCFF278VQW/@@download/ENCFF278VQW.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released ENCFF466CFM fastq reads ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2652531871 Bing Ren, UCSD 210b247f58fe0efc00eef327381d478d SRA:SRR4235657 https://www.encodeproject.org/files/ENCFF466CFM/@@download/ENCFF466CFM.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released ENCFF886VGQ bam unfiltered alignments ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF278VQW 3051188609 ENCODE Processing Pipeline b6ec354787a177eeb31709979ebfa969 https://www.encodeproject.org/files/ENCFF886VGQ/@@download/ENCFF886VGQ.bam mm10 released ENCFF219VAE bam unfiltered alignments ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF466CFM 3430500634 ENCODE Processing Pipeline a05688656eb66452a79260432ffc3285 https://www.encodeproject.org/files/ENCFF219VAE/@@download/ENCFF219VAE.bam mm10 released ENCFF019KCC bam alignments ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF278VQW 2497987571 ENCODE Processing Pipeline 4ab1e380831fd16fcfc7a443eb35a87d https://www.encodeproject.org/files/ENCFF019KCC/@@download/ENCFF019KCC.bam mm10 released ENCFF109KRV bam alignments ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF466CFM 2758492446 ENCODE Processing Pipeline 8430f1345bc9d30b0897ff061114b5e0 https://www.encodeproject.org/files/ENCFF109KRV/@@download/ENCFF109KRV.bam mm10 released ENCFF415BQR bed narrowPeak peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF109KRV, ENCFF298TEL 2506228 ENCODE Processing Pipeline 0fa31db3bb7a02200c4fd25a7be08176 https://www.encodeproject.org/files/ENCFF415BQR/@@download/ENCFF415BQR.bed.gz mm10 released ENCFF533HGO bigWig signal p-value ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF019KCC, ENCFF298TEL, ENCFF528BOJ 890920410 ENCODE Processing Pipeline ec69e4653d524a610174d285fad36270 https://www.encodeproject.org/files/ENCFF533HGO/@@download/ENCFF533HGO.bigWig mm10 released ENCFF473MEB bed narrowPeak peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF019KCC, ENCFF109KRV, ENCFF298TEL, ENCFF528BOJ 3424801 ENCODE Processing Pipeline 288f029b7efb6bd252e6ff4b73278bcf https://www.encodeproject.org/files/ENCFF473MEB/@@download/ENCFF473MEB.bed.gz mm10 released ENCFF823MFR bed narrowPeak peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF019KCC, ENCFF298TEL, ENCFF528BOJ 3324015 ENCODE Processing Pipeline fbfdba0e998741071f1ec9bc6892b1fb https://www.encodeproject.org/files/ENCFF823MFR/@@download/ENCFF823MFR.bed.gz mm10 released ENCFF890PYV bigBed narrowPeak peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF415BQR 6759442 ENCODE Processing Pipeline 18fd305de14efb175b309acb4ae686d6 https://www.encodeproject.org/files/ENCFF890PYV/@@download/ENCFF890PYV.bigBed mm10 released ENCFF879OSI bigWig signal p-value ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF109KRV, ENCFF298TEL 841400495 ENCODE Processing Pipeline bee3552ea9f89687e54a422bf08a034a https://www.encodeproject.org/files/ENCFF879OSI/@@download/ENCFF879OSI.bigWig mm10 released ENCFF426JHF bigBed narrowPeak peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF823MFR 8654919 ENCODE Processing Pipeline cc8e2c0f0eae3f8790b20d3e1f0fcb92 https://www.encodeproject.org/files/ENCFF426JHF/@@download/ENCFF426JHF.bigBed mm10 released ENCFF332RIU bigBed narrowPeak peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF473MEB 8949751 ENCODE Processing Pipeline 979b43908668ea3b841207daceffeb3a https://www.encodeproject.org/files/ENCFF332RIU/@@download/ENCFF332RIU.bigBed mm10 released ENCFF369ZSZ bigWig fold change over control ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF019KCC, ENCFF298TEL, ENCFF528BOJ 1055106782 ENCODE Processing Pipeline c9552c6c7f23b18889d5aef895aad7e6 https://www.encodeproject.org/files/ENCFF369ZSZ/@@download/ENCFF369ZSZ.bigWig mm10 released ENCFF576SGM bigWig signal p-value ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF019KCC, ENCFF109KRV, ENCFF298TEL, ENCFF528BOJ 1488249612 ENCODE Processing Pipeline 530edc48b34a47ac076aed80f169891d https://www.encodeproject.org/files/ENCFF576SGM/@@download/ENCFF576SGM.bigWig mm10 released ENCFF811RLU bigWig fold change over control ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF109KRV, ENCFF298TEL 995998775 ENCODE Processing Pipeline f3c3e879dafd82f740daa45d3cee811a https://www.encodeproject.org/files/ENCFF811RLU/@@download/ENCFF811RLU.bigWig mm10 released ENCFF919SMC bigBed narrowPeak replicated peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF191NER 6428711 ENCODE Processing Pipeline 1624d28a70507c89278c0b17fac25ff5 https://www.encodeproject.org/files/ENCFF919SMC/@@download/ENCFF919SMC.bigBed mm10 released ENCFF853FDI bigWig fold change over control ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF019KCC, ENCFF109KRV, ENCFF298TEL, ENCFF528BOJ 1646799297 ENCODE Processing Pipeline 802f82090069ebae44d65a1367fe4448 https://www.encodeproject.org/files/ENCFF853FDI/@@download/ENCFF853FDI.bigWig mm10 released ENCFF191NER bed narrowPeak replicated peaks ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF415BQR, ENCFF473MEB, ENCFF823MFR 3116823 ENCODE Processing Pipeline 54028b925833ca90534d4ed288f523e5 https://www.encodeproject.org/files/ENCFF191NER/@@download/ENCFF191NER.bed.gz mm10 released ENCFF277EWJ fastq reads ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2757424346 Bing Ren, UCSD 350280dfd37caf9318cc4b19c64adf90 SRA:SRR4235697 https://www.encodeproject.org/files/ENCFF277EWJ/@@download/ENCFF277EWJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released mild to moderate bottlenecking ENCFF803LSX fastq reads ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2563674579 Bing Ren, UCSD b03ed2f17be483bc3fc6bd0dd9e19748 SRA:SRR4235696 https://www.encodeproject.org/files/ENCFF803LSX/@@download/ENCFF803LSX.fastq.gz Illumina HiSeq 4000 /files/ENCFF366TEJ/ released mild to moderate bottlenecking ENCFF707AGS bam unfiltered alignments ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF803LSX 3305360697 ENCODE Processing Pipeline 11081228f6439c31112e2663c547323f https://www.encodeproject.org/files/ENCFF707AGS/@@download/ENCFF707AGS.bam mm10 released mild to moderate bottlenecking ENCFF609DJW bam unfiltered alignments ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF277EWJ 3548847790 ENCODE Processing Pipeline 88d91aa32a5864c4f209d04938b73d12 https://www.encodeproject.org/files/ENCFF609DJW/@@download/ENCFF609DJW.bam mm10 released mild to moderate bottlenecking ENCFF416MSB bam alignments ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF803LSX 2613689206 ENCODE Processing Pipeline f03ecb77c71046d3da2d271a2cba66a7 https://www.encodeproject.org/files/ENCFF416MSB/@@download/ENCFF416MSB.bam mm10 released mild to moderate bottlenecking ENCFF170VVI bam alignments ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF277EWJ 2872197619 ENCODE Processing Pipeline 34988b51e20dcbea6a74f356d3d33ec0 https://www.encodeproject.org/files/ENCFF170VVI/@@download/ENCFF170VVI.bam mm10 released mild to moderate bottlenecking ENCFF182VGX bigBed narrowPeak peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF485GZX 9350378 ENCODE Processing Pipeline 06263a5af48594e1734f23210df99ca3 https://www.encodeproject.org/files/ENCFF182VGX/@@download/ENCFF182VGX.bigBed mm10 released mild to moderate bottlenecking ENCFF485GZX bed narrowPeak peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF416MSB 3659433 ENCODE Processing Pipeline 4697b389f2395d3a178b0ed6fd03664a https://www.encodeproject.org/files/ENCFF485GZX/@@download/ENCFF485GZX.bed.gz mm10 released mild to moderate bottlenecking ENCFF598SEJ bed narrowPeak peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF170VVI, ENCFF181QWR, ENCFF344GQQ 3227581 ENCODE Processing Pipeline 413423215903a1b93d76b372365d9751 https://www.encodeproject.org/files/ENCFF598SEJ/@@download/ENCFF598SEJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF968GGT bigBed narrowPeak peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF598SEJ 8352091 ENCODE Processing Pipeline f350f054c05bbaf69dd247b974c5ce93 https://www.encodeproject.org/files/ENCFF968GGT/@@download/ENCFF968GGT.bigBed mm10 released mild to moderate bottlenecking ENCFF724CUB bed narrowPeak peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF170VVI, ENCFF181QWR, ENCFF344GQQ, ENCFF416MSB 4290343 ENCODE Processing Pipeline 50f10e9cb58124a24ae4de3bf24c8234 https://www.encodeproject.org/files/ENCFF724CUB/@@download/ENCFF724CUB.bed.gz mm10 released mild to moderate bottlenecking ENCFF871UHT bigBed narrowPeak peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF724CUB 10839146 ENCODE Processing Pipeline b122c811dd56164aae75ca46669c201b https://www.encodeproject.org/files/ENCFF871UHT/@@download/ENCFF871UHT.bigBed mm10 released mild to moderate bottlenecking ENCFF950CJW bigWig signal p-value ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF416MSB 856932925 ENCODE Processing Pipeline 3d725c12210b554daeedb37dd93f3ced https://www.encodeproject.org/files/ENCFF950CJW/@@download/ENCFF950CJW.bigWig mm10 released mild to moderate bottlenecking ENCFF762KHE bigWig fold change over control ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF170VVI, ENCFF181QWR, ENCFF344GQQ 1209916023 ENCODE Processing Pipeline 0a6a7d4c90bf8bf55d49864a3bd39eb6 https://www.encodeproject.org/files/ENCFF762KHE/@@download/ENCFF762KHE.bigWig mm10 released mild to moderate bottlenecking ENCFF888CSF bigWig signal p-value ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF170VVI, ENCFF181QWR, ENCFF344GQQ 1059024910 ENCODE Processing Pipeline 29d9d2722911dc24c9c2fe516406eb5a https://www.encodeproject.org/files/ENCFF888CSF/@@download/ENCFF888CSF.bigWig mm10 released mild to moderate bottlenecking ENCFF381PET bigWig signal p-value ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF170VVI, ENCFF181QWR, ENCFF344GQQ, ENCFF416MSB 1678795993 ENCODE Processing Pipeline 454fadcd24b85e1c261732b5ceb8b7c6 https://www.encodeproject.org/files/ENCFF381PET/@@download/ENCFF381PET.bigWig mm10 released mild to moderate bottlenecking ENCFF536YCP bigWig fold change over control ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF416MSB 1154948341 ENCODE Processing Pipeline 4734f5f8c045966feba9c7a7948d114b https://www.encodeproject.org/files/ENCFF536YCP/@@download/ENCFF536YCP.bigWig mm10 released mild to moderate bottlenecking ENCFF945SSM bed narrowPeak replicated peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF485GZX, ENCFF598SEJ, ENCFF724CUB 3470040 ENCODE Processing Pipeline b44237ff209eb8a65a7964256a1ac472 https://www.encodeproject.org/files/ENCFF945SSM/@@download/ENCFF945SSM.bed.gz mm10 released mild to moderate bottlenecking ENCFF894YHQ bigWig fold change over control ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF170VVI, ENCFF181QWR, ENCFF344GQQ, ENCFF416MSB 1717264606 ENCODE Processing Pipeline 8f2977e653726d0a26c940a82faa2600 https://www.encodeproject.org/files/ENCFF894YHQ/@@download/ENCFF894YHQ.bigWig mm10 released mild to moderate bottlenecking ENCFF570EEN bigBed narrowPeak replicated peaks ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF945SSM 6955391 ENCODE Processing Pipeline 5d399464821e12113f915172fae00851 https://www.encodeproject.org/files/ENCFF570EEN/@@download/ENCFF570EEN.bigBed mm10 released mild to moderate bottlenecking ENCFF186DJM fastq reads ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2595573914 Bing Ren, UCSD 5918378c7cdcbbff57678afe8ee0be1d SRA:SRR4235679 https://www.encodeproject.org/files/ENCFF186DJM/@@download/ENCFF186DJM.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released moderate library complexity, mild to moderate bottlenecking ENCFF735DRJ fastq reads ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 3061166432 Bing Ren, UCSD 39aa1ce2e785c16d263d94ae1bc59290 SRA:SRR4235680 https://www.encodeproject.org/files/ENCFF735DRJ/@@download/ENCFF735DRJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released moderate library complexity, mild to moderate bottlenecking ENCFF382RSG bam unfiltered alignments ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF735DRJ 3767238493 ENCODE Processing Pipeline 46c9ed6504611be92df64836b2ddde02 https://www.encodeproject.org/files/ENCFF382RSG/@@download/ENCFF382RSG.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF360VBP bam unfiltered alignments ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF186DJM 3238306932 ENCODE Processing Pipeline 92599bdd15db57391b9a50359a29af73 https://www.encodeproject.org/files/ENCFF360VBP/@@download/ENCFF360VBP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF040LTV bam alignments ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF735DRJ 2512948997 ENCODE Processing Pipeline d43d3235ecc5cdeeffc31552d43cf51e https://www.encodeproject.org/files/ENCFF040LTV/@@download/ENCFF040LTV.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF372RCJ bam alignments ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF186DJM 2299620837 ENCODE Processing Pipeline 0b3597b4552017286781621bee2b237d https://www.encodeproject.org/files/ENCFF372RCJ/@@download/ENCFF372RCJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF139CXF bed narrowPeak peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF372RCJ, ENCFF689YLF, ENCFF778IFH 4932337 ENCODE Processing Pipeline 1190a3a8a7abe1d9f689a34f0d644b3b https://www.encodeproject.org/files/ENCFF139CXF/@@download/ENCFF139CXF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF707EDR bed narrowPeak peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF040LTV, ENCFF372RCJ, ENCFF689YLF, ENCFF778IFH 3034333 ENCODE Processing Pipeline 045b99524719a034df966cd4ae29e784 https://www.encodeproject.org/files/ENCFF707EDR/@@download/ENCFF707EDR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF265LXX bigBed narrowPeak peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF139CXF 10028199 ENCODE Processing Pipeline 57d5ce1765c3433a4cec75e5066e6d17 https://www.encodeproject.org/files/ENCFF265LXX/@@download/ENCFF265LXX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF188OWA bed narrowPeak peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF040LTV, ENCFF689YLF 3899513 ENCODE Processing Pipeline dda340b4328db8862f873241157b7ef2 https://www.encodeproject.org/files/ENCFF188OWA/@@download/ENCFF188OWA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF331XTU bigBed narrowPeak peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF188OWA 8006917 ENCODE Processing Pipeline 73cd14f28701ded9196c471fbd12ae77 https://www.encodeproject.org/files/ENCFF331XTU/@@download/ENCFF331XTU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF579GMO bigWig signal p-value ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF372RCJ, ENCFF689YLF, ENCFF778IFH 903622740 ENCODE Processing Pipeline 4d83f3fa7995de9b043a69716f3da26c https://www.encodeproject.org/files/ENCFF579GMO/@@download/ENCFF579GMO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF746KFX bigBed narrowPeak peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF707EDR 6284677 ENCODE Processing Pipeline 3d59701fd236c85404e63f55e5da34e3 https://www.encodeproject.org/files/ENCFF746KFX/@@download/ENCFF746KFX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF584TSV bigWig fold change over control ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF372RCJ, ENCFF689YLF, ENCFF778IFH 939689186 ENCODE Processing Pipeline 690aa77c44fe1f5930d34404dc435e56 https://www.encodeproject.org/files/ENCFF584TSV/@@download/ENCFF584TSV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF941LCB bigWig signal p-value ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF040LTV, ENCFF689YLF 877603869 ENCODE Processing Pipeline 1ea6fcab0a1689b69b729f47c33534b6 https://www.encodeproject.org/files/ENCFF941LCB/@@download/ENCFF941LCB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF402QFU bigWig signal p-value ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF040LTV, ENCFF372RCJ, ENCFF689YLF, ENCFF778IFH 1481428951 ENCODE Processing Pipeline f265e81e10e7a77d183bf7d756a25ba0 https://www.encodeproject.org/files/ENCFF402QFU/@@download/ENCFF402QFU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF210MLA bigWig fold change over control ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF040LTV, ENCFF689YLF 879070735 ENCODE Processing Pipeline 816eb3c9c8914ca855e5b5a20bf2b293 https://www.encodeproject.org/files/ENCFF210MLA/@@download/ENCFF210MLA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF517LVB bigBed narrowPeak replicated peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF095AYA 4157276 ENCODE Processing Pipeline 25265d6c86816804cd9b49845f03c5c7 https://www.encodeproject.org/files/ENCFF517LVB/@@download/ENCFF517LVB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF095AYA bed narrowPeak replicated peaks ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF139CXF, ENCFF188OWA, ENCFF707EDR 2522560 ENCODE Processing Pipeline d115f2c7e9e78aa7dc35a4f10345a702 https://www.encodeproject.org/files/ENCFF095AYA/@@download/ENCFF095AYA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF450RTN bigWig fold change over control ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF040LTV, ENCFF372RCJ, ENCFF689YLF, ENCFF778IFH 1532737711 ENCODE Processing Pipeline 84df3645fa4dc3630c181ae5edb990e3 https://www.encodeproject.org/files/ENCFF450RTN/@@download/ENCFF450RTN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF002ANZ fastq reads ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1510646019 Bing Ren, UCSD 36575270a14287af02f53c00c464dacb SRA:SRR3651538 https://www.encodeproject.org/files/ENCFF002ANZ/@@download/ENCFF002ANZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released ENCFF002AOB fastq reads ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1939318289 Bing Ren, UCSD 0d4e5fe861931c16222084a17aef69a6 SRA:SRR3651539 https://www.encodeproject.org/files/ENCFF002AOB/@@download/ENCFF002AOB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APW/ released ENCFF496YTA bam alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOB, ENCFF806TVZ 1545574102 ENCODE Processing Pipeline 7fb2217bd6860b6658e14f1bae30f20b https://www.encodeproject.org/files/ENCFF496YTA/@@download/ENCFF496YTA.bam mm10-minimal archived ENCFF257OQZ bam alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANZ, ENCFF806TVZ 1263212335 ENCODE Processing Pipeline 0f284c2741aaafa6b9f0a7b716d21543 https://www.encodeproject.org/files/ENCFF257OQZ/@@download/ENCFF257OQZ.bam mm10-minimal archived ENCFF290XDA bed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF257OQZ, ENCFF417WKH, ENCFF496YTA, ENCFF716BBX 1215507 ENCODE Processing Pipeline c0de2bf5863981a0e10ea77cc8e918ee https://www.encodeproject.org/files/ENCFF290XDA/@@download/ENCFF290XDA.bed.gz mm10-minimal archived ENCFF062EHC bigBed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF752UFJ 3045280 ENCODE Processing Pipeline 62f6f3da897f0395d8a7a7c73f0eacee https://www.encodeproject.org/files/ENCFF062EHC/@@download/ENCFF062EHC.bigBed mm10-minimal archived ENCFF752UFJ bed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF496YTA, ENCFF716BBX 975998 ENCODE Processing Pipeline b7c79eb389098b2cf6882bee387b1159 https://www.encodeproject.org/files/ENCFF752UFJ/@@download/ENCFF752UFJ.bed.gz mm10-minimal archived ENCFF310BNU bed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF257OQZ, ENCFF417WKH 928215 ENCODE Processing Pipeline 0afcec87707f1555a12f3ebb6d8274fe https://www.encodeproject.org/files/ENCFF310BNU/@@download/ENCFF310BNU.bed.gz mm10-minimal archived ENCFF236BQT bigBed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF310BNU 2879909 ENCODE Processing Pipeline 426715ab5402cf502948a1671b80880e https://www.encodeproject.org/files/ENCFF236BQT/@@download/ENCFF236BQT.bigBed mm10-minimal archived ENCFF714QIP bigBed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290XDA 3615400 ENCODE Processing Pipeline 7d12fe7a9ee3e7110f762e7c211d020f https://www.encodeproject.org/files/ENCFF714QIP/@@download/ENCFF714QIP.bigBed mm10-minimal archived ENCFF992EST bigWig signal p-value ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF496YTA, ENCFF716BBX 542462386 ENCODE Processing Pipeline 39084b1cc3a75be3611a8f6f4dbdf84a https://www.encodeproject.org/files/ENCFF992EST/@@download/ENCFF992EST.bigWig mm10-minimal archived ENCFF403YSG bigWig signal p-value ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF257OQZ, ENCFF417WKH 401213183 ENCODE Processing Pipeline 758e9fa0986ea48788961b902b6be298 https://www.encodeproject.org/files/ENCFF403YSG/@@download/ENCFF403YSG.bigWig mm10-minimal archived ENCFF599LHV bigWig signal p-value ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF257OQZ, ENCFF417WKH, ENCFF496YTA, ENCFF716BBX 716357943 ENCODE Processing Pipeline d8d5041d4e09d827a425dc0612e32bf1 https://www.encodeproject.org/files/ENCFF599LHV/@@download/ENCFF599LHV.bigWig mm10-minimal archived ENCFF036IDG bigWig fold change over control ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF496YTA, ENCFF716BBX 537731768 ENCODE Processing Pipeline 111c3d4257505ab5d30aeaf794fe5797 https://www.encodeproject.org/files/ENCFF036IDG/@@download/ENCFF036IDG.bigWig mm10-minimal archived ENCFF057BKE bigWig fold change over control ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF257OQZ, ENCFF417WKH 472929437 ENCODE Processing Pipeline 316fc93f111d5881537887a69e8ea606 https://www.encodeproject.org/files/ENCFF057BKE/@@download/ENCFF057BKE.bigWig mm10-minimal archived ENCFF686NIK bigWig fold change over control ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF257OQZ, ENCFF417WKH, ENCFF496YTA, ENCFF716BBX 934100455 ENCODE Processing Pipeline fbf3b1800ce499ed19c1a60c74445f3f https://www.encodeproject.org/files/ENCFF686NIK/@@download/ENCFF686NIK.bigWig mm10-minimal archived ENCFF639GNW bigBed narrowPeak replicated peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF208SUO 2070631 ENCODE Processing Pipeline 50c964d3715ca21ec6a8c470e0a0fb5b https://www.encodeproject.org/files/ENCFF639GNW/@@download/ENCFF639GNW.bigBed mm10-minimal archived ENCFF208SUO bed narrowPeak replicated peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290XDA, ENCFF310BNU, ENCFF752UFJ 898662 ENCODE Processing Pipeline 63645b124e5cc63b6c051c3b1c28663c https://www.encodeproject.org/files/ENCFF208SUO/@@download/ENCFF208SUO.bed.gz mm10-minimal archived ENCFF935IEG bam unfiltered alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ANZ, ENCFF018NEO 1642106908 ENCODE Processing Pipeline 17666657a86562c451f09bfa5c907230 https://www.encodeproject.org/files/ENCFF935IEG/@@download/ENCFF935IEG.bam mm10 released ENCFF083RYW bam unfiltered alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOB, ENCFF018NEO 2078367943 ENCODE Processing Pipeline 7c216f0dc2abc1c434025c69823a6cab https://www.encodeproject.org/files/ENCFF083RYW/@@download/ENCFF083RYW.bam mm10 released ENCFF643PMC bam alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ANZ, ENCFF018NEO 1263025814 ENCODE Processing Pipeline d8eaf4213febb4aa3e9a205858e48502 https://www.encodeproject.org/files/ENCFF643PMC/@@download/ENCFF643PMC.bam mm10 released ENCFF310VFG bam alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOB, ENCFF018NEO 1545274965 ENCODE Processing Pipeline 09b5e492512aab1c67be46c859b44c6b https://www.encodeproject.org/files/ENCFF310VFG/@@download/ENCFF310VFG.bam mm10 released ENCFF942FYK bed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310VFG, ENCFF416UQK 976264 ENCODE Processing Pipeline 33915c292cab27c23e6e488e31edaefe https://www.encodeproject.org/files/ENCFF942FYK/@@download/ENCFF942FYK.bed.gz mm10 released ENCFF595XLB bed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF643PMC 928404 ENCODE Processing Pipeline 857f1a02e795760cf57fb2a73de15aca https://www.encodeproject.org/files/ENCFF595XLB/@@download/ENCFF595XLB.bed.gz mm10 released ENCFF984PNN bed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF310VFG, ENCFF416UQK, ENCFF643PMC 1217026 ENCODE Processing Pipeline 5d6f77a4ed11f809465bf43df63a602d https://www.encodeproject.org/files/ENCFF984PNN/@@download/ENCFF984PNN.bed.gz mm10 released ENCFF297FWJ bigBed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF942FYK 3046907 ENCODE Processing Pipeline 8702855faee7fed9acb4874558a3b264 https://www.encodeproject.org/files/ENCFF297FWJ/@@download/ENCFF297FWJ.bigBed mm10 released ENCFF126IOB bigBed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF595XLB 2881055 ENCODE Processing Pipeline 6bb75f039a5d668acefbdc5b56e05960 https://www.encodeproject.org/files/ENCFF126IOB/@@download/ENCFF126IOB.bigBed mm10 released ENCFF135RYT bigBed narrowPeak peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF984PNN 3618934 ENCODE Processing Pipeline aad8842724a418709cb683c20e9f1cf4 https://www.encodeproject.org/files/ENCFF135RYT/@@download/ENCFF135RYT.bigBed mm10 released ENCFF723FOO bigWig signal p-value ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310VFG, ENCFF416UQK 512587686 ENCODE Processing Pipeline 24ffccc4b341541db96f08de7b260ca9 https://www.encodeproject.org/files/ENCFF723FOO/@@download/ENCFF723FOO.bigWig mm10 released ENCFF791PXM bigWig signal p-value ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF643PMC 496464918 ENCODE Processing Pipeline af15da95e930884a4aa401b9c8d8daad https://www.encodeproject.org/files/ENCFF791PXM/@@download/ENCFF791PXM.bigWig mm10 released ENCFF074JOS bigWig signal p-value ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF310VFG, ENCFF416UQK, ENCFF643PMC 825819867 ENCODE Processing Pipeline a74f334889e7f76b77263024f899a15e https://www.encodeproject.org/files/ENCFF074JOS/@@download/ENCFF074JOS.bigWig mm10 released ENCFF099PAD bigWig fold change over control ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310VFG, ENCFF416UQK 538726690 ENCODE Processing Pipeline 37803186f4b4ed3873d7878ba3c30b59 https://www.encodeproject.org/files/ENCFF099PAD/@@download/ENCFF099PAD.bigWig mm10 released ENCFF357BBN bigWig fold change over control ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF271IBK, ENCFF643PMC 471526179 ENCODE Processing Pipeline f4cb6c42824fe5a3d3e1b24952ea0319 https://www.encodeproject.org/files/ENCFF357BBN/@@download/ENCFF357BBN.bigWig mm10 released ENCFF361RBA bigWig fold change over control ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF271IBK, ENCFF310VFG, ENCFF416UQK, ENCFF643PMC 935352671 ENCODE Processing Pipeline 94e69dcf79c43ee3229963c41a38db47 https://www.encodeproject.org/files/ENCFF361RBA/@@download/ENCFF361RBA.bigWig mm10 released ENCFF445SCM bed narrowPeak replicated peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF595XLB, ENCFF942FYK, ENCFF984PNN 894886 ENCODE Processing Pipeline 2269c3556efcdc89c8c5cdd25a36f63b https://www.encodeproject.org/files/ENCFF445SCM/@@download/ENCFF445SCM.bed.gz mm10 released ENCFF883VLI bigBed narrowPeak replicated peaks ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF445SCM 2060035 ENCODE Processing Pipeline 27d5befbca9a4ebe461a07483fa696c7 https://www.encodeproject.org/files/ENCFF883VLI/@@download/ENCFF883VLI.bigBed mm10 released ENCFF002AMO fastq reads ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1258504513 Bing Ren, UCSD ff84d3409a3c22433b489a7b9c3138e2 SRA:SRR3652717 https://www.encodeproject.org/files/ENCFF002AMO/@@download/ENCFF002AMO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQE/ released low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AMR fastq reads ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1509176016 Bing Ren, UCSD 7c8356f930fa483683b0e1622f8821f9 SRA:SRR3652718 https://www.encodeproject.org/files/ENCFF002AMR/@@download/ENCFF002AMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQC/ released low read length, mild to moderate bottlenecking, low read depth ENCFF547STJ bam alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMR, ENCFF806TVZ 951236562 ENCODE Processing Pipeline 66c7b1cf915b1d5fe6aa7c0bcca744e5 https://www.encodeproject.org/files/ENCFF547STJ/@@download/ENCFF547STJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF679KQS bam alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMO, ENCFF806TVZ 835297961 ENCODE Processing Pipeline f41f369cefb2f2951053bea410fef337 https://www.encodeproject.org/files/ENCFF679KQS/@@download/ENCFF679KQS.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF085FAT bed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF679KQS, ENCFF999TAG 571271 ENCODE Processing Pipeline 580b9a1e2cba50e15cc89187d6430d17 https://www.encodeproject.org/files/ENCFF085FAT/@@download/ENCFF085FAT.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF951VQP bed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF547STJ, ENCFF999TAG 554530 ENCODE Processing Pipeline e8677357c50fcace9803db0dc9c2e727 https://www.encodeproject.org/files/ENCFF951VQP/@@download/ENCFF951VQP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF561PFZ bed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF547STJ, ENCFF679KQS, ENCFF999TAG 519093 ENCODE Processing Pipeline 291dcc35dbcff3a0a516c12b297c4695 https://www.encodeproject.org/files/ENCFF561PFZ/@@download/ENCFF561PFZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF665EEV bigBed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF085FAT 1511934 ENCODE Processing Pipeline 7dcca37af549441e2020e7263b72f31b https://www.encodeproject.org/files/ENCFF665EEV/@@download/ENCFF665EEV.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF074RJQ bigBed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF561PFZ 1715091 ENCODE Processing Pipeline 6b42fd2b344cce97cc84ceefaf9ac91a https://www.encodeproject.org/files/ENCFF074RJQ/@@download/ENCFF074RJQ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF646GXP bigBed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF951VQP 1808852 ENCODE Processing Pipeline 0d44d572c010fda17f61bc0298f5da8e https://www.encodeproject.org/files/ENCFF646GXP/@@download/ENCFF646GXP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF854CPG bigWig signal p-value ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF679KQS, ENCFF999TAG 364225569 ENCODE Processing Pipeline b5376a17115fa8a17b1ff0802f436aa4 https://www.encodeproject.org/files/ENCFF854CPG/@@download/ENCFF854CPG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF350WIC bigWig signal p-value ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF547STJ, ENCFF999TAG 451512577 ENCODE Processing Pipeline 801064c997a689418ceaa0e8053fb4c3 https://www.encodeproject.org/files/ENCFF350WIC/@@download/ENCFF350WIC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF072XZY bigWig signal p-value ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF547STJ, ENCFF679KQS, ENCFF999TAG 629266429 ENCODE Processing Pipeline 5932d302396067a48aa6cb57fdec11ff https://www.encodeproject.org/files/ENCFF072XZY/@@download/ENCFF072XZY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF005PRH bigWig fold change over control ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF679KQS, ENCFF999TAG 413945107 ENCODE Processing Pipeline 8aa7d588dd612a405e59247bc93c79c6 https://www.encodeproject.org/files/ENCFF005PRH/@@download/ENCFF005PRH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF301LOF bigWig fold change over control ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF547STJ, ENCFF999TAG 407690098 ENCODE Processing Pipeline bf21a3ba48f0b436a5beb30340bf4e80 https://www.encodeproject.org/files/ENCFF301LOF/@@download/ENCFF301LOF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF482MZB bed narrowPeak replicated peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF085FAT, ENCFF561PFZ, ENCFF951VQP 638550 ENCODE Processing Pipeline 7f9a32efc8ec619356716ca62c21c5a3 https://www.encodeproject.org/files/ENCFF482MZB/@@download/ENCFF482MZB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF152FWK bigWig fold change over control ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF547STJ, ENCFF679KQS, ENCFF999TAG 676453519 ENCODE Processing Pipeline 66ba858bf325d838a338c48544d235ee https://www.encodeproject.org/files/ENCFF152FWK/@@download/ENCFF152FWK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF672ZZL bigBed narrowPeak replicated peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF482MZB 1567191 ENCODE Processing Pipeline cf08185782ddd2b3fa4e71ab96295afb https://www.encodeproject.org/files/ENCFF672ZZL/@@download/ENCFF672ZZL.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF226NOQ bam unfiltered alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMO, ENCFF018NEO 1321468088 ENCODE Processing Pipeline e631a50501ce3889b8bab120a12e0af8 https://www.encodeproject.org/files/ENCFF226NOQ/@@download/ENCFF226NOQ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF996ELE bam alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMO, ENCFF018NEO 834959613 ENCODE Processing Pipeline e00487ed6a2d9d96c6b5bca81cc10c85 https://www.encodeproject.org/files/ENCFF996ELE/@@download/ENCFF996ELE.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF364MKL bam unfiltered alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMR, ENCFF018NEO 1494648928 ENCODE Processing Pipeline 761e36f3182a9210ae9b448530f780d1 https://www.encodeproject.org/files/ENCFF364MKL/@@download/ENCFF364MKL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF527OOW bam alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMR, ENCFF018NEO 951076235 ENCODE Processing Pipeline 0aa101deac044e0d6067e993e3bdc1b6 https://www.encodeproject.org/files/ENCFF527OOW/@@download/ENCFF527OOW.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF303AXK bed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF996ELE 530219 ENCODE Processing Pipeline 7a97854a43a5973e33627d449f39dc2d https://www.encodeproject.org/files/ENCFF303AXK/@@download/ENCFF303AXK.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF855ZIG bed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF527OOW 557478 ENCODE Processing Pipeline a3f0ba106da871e9a259cb4149530059 https://www.encodeproject.org/files/ENCFF855ZIG/@@download/ENCFF855ZIG.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF707CNR bigBed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF855ZIG 1810779 ENCODE Processing Pipeline c710b61295c1392ed99e297562830061 https://www.encodeproject.org/files/ENCFF707CNR/@@download/ENCFF707CNR.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF416JZH bigWig fold change over control ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF527OOW 401125719 ENCODE Processing Pipeline 7e3ef02fc8c5bfba354f5c77052b78d1 https://www.encodeproject.org/files/ENCFF416JZH/@@download/ENCFF416JZH.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF696ITD bigWig fold change over control ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF446WFN, ENCFF527OOW, ENCFF996ELE 657606519 ENCODE Processing Pipeline 8c60299265450e052a2b51f172e7865c https://www.encodeproject.org/files/ENCFF696ITD/@@download/ENCFF696ITD.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF341YJE bigBed narrowPeak replicated peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF077SVM 1567279 ENCODE Processing Pipeline e4da4638d5685839716de39e708e5a3f https://www.encodeproject.org/files/ENCFF341YJE/@@download/ENCFF341YJE.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF185GVH bed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF446WFN, ENCFF527OOW, ENCFF996ELE 516231 ENCODE Processing Pipeline e94322dd1f61bb8210713a808e630d5b https://www.encodeproject.org/files/ENCFF185GVH/@@download/ENCFF185GVH.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF697ITM bigBed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185GVH 1710005 ENCODE Processing Pipeline 663be72f22e478b84ccd79cd4abd375a https://www.encodeproject.org/files/ENCFF697ITM/@@download/ENCFF697ITM.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF785HVQ bigWig signal p-value ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF527OOW 478674422 ENCODE Processing Pipeline 0f4503b37a926c9ac19ba54679def5ab https://www.encodeproject.org/files/ENCFF785HVQ/@@download/ENCFF785HVQ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF305VXG bigBed narrowPeak peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF303AXK 1779637 ENCODE Processing Pipeline cb43b3cedde8b4d2b0b47c9f3569d0e3 https://www.encodeproject.org/files/ENCFF305VXG/@@download/ENCFF305VXG.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF367GDV bigWig signal p-value ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF996ELE 435678305 ENCODE Processing Pipeline 7f246d9c24067b58a50474487056c0c2 https://www.encodeproject.org/files/ENCFF367GDV/@@download/ENCFF367GDV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF818JQR bigWig signal p-value ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF446WFN, ENCFF527OOW, ENCFF996ELE 587148425 ENCODE Processing Pipeline 90d8a989e379e9844622e1c59f9bc882 https://www.encodeproject.org/files/ENCFF818JQR/@@download/ENCFF818JQR.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF024RDG bigWig fold change over control ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF996ELE 448179586 ENCODE Processing Pipeline 3207afac6aec6127e706374445253067 https://www.encodeproject.org/files/ENCFF024RDG/@@download/ENCFF024RDG.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF077SVM bed narrowPeak replicated peaks ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185GVH, ENCFF303AXK, ENCFF855ZIG 633046 ENCODE Processing Pipeline 47cf37dc5a6337c6af54ccd62323dc30 https://www.encodeproject.org/files/ENCFF077SVM/@@download/ENCFF077SVM.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF001ZSQ fastq reads ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 999523556 Bing Ren, UCSD 0994b980f27dcb9066c293f464813a90 SRA:SRR3652018 https://www.encodeproject.org/files/ENCFF001ZSQ/@@download/ENCFF001ZSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUM/ released low read length ENCFF001ZST fastq reads ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1176855269 Bing Ren, UCSD a15cd239bbc9f134025bc18bf2903ded SRA:SRR3652017 https://www.encodeproject.org/files/ENCFF001ZST/@@download/ENCFF001ZST.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUS/ released low read length ENCFF393VJB bam alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSQ, ENCFF806TVZ 926243078 ENCODE Processing Pipeline 58cef7277824c62dbf684512d704a140 https://www.encodeproject.org/files/ENCFF393VJB/@@download/ENCFF393VJB.bam mm10-minimal archived low read length ENCFF054JIU bam alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZST, ENCFF806TVZ 1067009705 ENCODE Processing Pipeline efcd2c1cc750fa8f8e3f49c227ca0ec6 https://www.encodeproject.org/files/ENCFF054JIU/@@download/ENCFF054JIU.bam mm10-minimal archived low read length ENCFF547MIS bed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF393VJB, ENCFF695ODM 908495 ENCODE Processing Pipeline ce2c051f626bf1f5544bf2771c65c9ab https://www.encodeproject.org/files/ENCFF547MIS/@@download/ENCFF547MIS.bed.gz mm10-minimal archived low read length ENCFF940HXB bed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF054JIU, ENCFF204GFG, ENCFF695ODM 1005914 ENCODE Processing Pipeline 6a28ed0c72112819c282c06b85096cb1 https://www.encodeproject.org/files/ENCFF940HXB/@@download/ENCFF940HXB.bed.gz mm10-minimal archived low read length ENCFF722WAA bed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF054JIU, ENCFF204GFG, ENCFF393VJB, ENCFF695ODM 681386 ENCODE Processing Pipeline 18ac27dd9ea550de7dc6a85cd0026c7c https://www.encodeproject.org/files/ENCFF722WAA/@@download/ENCFF722WAA.bed.gz mm10-minimal archived low read length ENCFF481UAY bigBed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF940HXB 2472798 ENCODE Processing Pipeline c8961c4d912ec1b54ae00a8be3d4a263 https://www.encodeproject.org/files/ENCFF481UAY/@@download/ENCFF481UAY.bigBed mm10-minimal archived low read length ENCFF547YXQ bigBed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF722WAA 2167293 ENCODE Processing Pipeline 60ff7e8fcf53b6fcf1393f4da63b5020 https://www.encodeproject.org/files/ENCFF547YXQ/@@download/ENCFF547YXQ.bigBed mm10-minimal archived low read length ENCFF656HLC bigWig fold change over control ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF054JIU, ENCFF204GFG, ENCFF393VJB, ENCFF695ODM 700435446 ENCODE Processing Pipeline 4a0fd082c69f173233f2dd80439f21bc https://www.encodeproject.org/files/ENCFF656HLC/@@download/ENCFF656HLC.bigWig mm10-minimal archived low read length ENCFF868JEC bigBed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF547MIS 2293424 ENCODE Processing Pipeline 23c2d86ef37f06c7d498e2dff7d782bb https://www.encodeproject.org/files/ENCFF868JEC/@@download/ENCFF868JEC.bigBed mm10-minimal archived low read length ENCFF238DMP bigWig fold change over control ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF393VJB, ENCFF695ODM 417760256 ENCODE Processing Pipeline 79fd1fd9a728c231e8019f8e6ceb2d94 https://www.encodeproject.org/files/ENCFF238DMP/@@download/ENCFF238DMP.bigWig mm10-minimal archived low read length ENCFF480NZN bed narrowPeak replicated peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF547MIS, ENCFF722WAA, ENCFF940HXB 781159 ENCODE Processing Pipeline 81e8a7c831deca2001dba60ae597549a https://www.encodeproject.org/files/ENCFF480NZN/@@download/ENCFF480NZN.bed.gz mm10-minimal archived low read length ENCFF827PYN bigWig signal p-value ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF054JIU, ENCFF204GFG, ENCFF695ODM 379578667 ENCODE Processing Pipeline 8d863e802dda20367357f5d9ee965049 https://www.encodeproject.org/files/ENCFF827PYN/@@download/ENCFF827PYN.bigWig mm10-minimal archived low read length ENCFF628VPI bigWig signal p-value ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF054JIU, ENCFF204GFG, ENCFF393VJB, ENCFF695ODM 506324380 ENCODE Processing Pipeline d2a35283faeb93d9a3c012cd2860edf6 https://www.encodeproject.org/files/ENCFF628VPI/@@download/ENCFF628VPI.bigWig mm10-minimal archived low read length ENCFF766UTA bigWig fold change over control ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF054JIU, ENCFF204GFG, ENCFF695ODM 458654916 ENCODE Processing Pipeline 3ff9d9ec73022fce10efffac35d327ee https://www.encodeproject.org/files/ENCFF766UTA/@@download/ENCFF766UTA.bigWig mm10-minimal archived low read length ENCFF951ABB bigWig signal p-value ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF393VJB, ENCFF695ODM 475350635 ENCODE Processing Pipeline c04a4297b94044d6f6b76b11e3f0f3a6 https://www.encodeproject.org/files/ENCFF951ABB/@@download/ENCFF951ABB.bigWig mm10-minimal archived low read length ENCFF793KPK bigBed narrowPeak replicated peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF480NZN 1979379 ENCODE Processing Pipeline 08ffcbab599c9a0383b7722e4afd73ba https://www.encodeproject.org/files/ENCFF793KPK/@@download/ENCFF793KPK.bigBed mm10-minimal archived low read length ENCFF357OOH bam unfiltered alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSQ, ENCFF018NEO 1303627615 ENCODE Processing Pipeline 0ecf4fa5abacca64e9d6a86b380ad99a https://www.encodeproject.org/files/ENCFF357OOH/@@download/ENCFF357OOH.bam mm10 released low read length ENCFF273GOF bam unfiltered alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZST, ENCFF018NEO 1507045374 ENCODE Processing Pipeline 0751769c15d1b55cc1d25f3ce869176c https://www.encodeproject.org/files/ENCFF273GOF/@@download/ENCFF273GOF.bam mm10 released low read length ENCFF012BNH bam alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSQ, ENCFF018NEO 926033146 ENCODE Processing Pipeline 415b3da81d11157be04f569a70a8726c https://www.encodeproject.org/files/ENCFF012BNH/@@download/ENCFF012BNH.bam mm10 released low read length ENCFF950CZX bam alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZST, ENCFF018NEO 1066817139 ENCODE Processing Pipeline 289b852c0252a3fef18a428fcce83ba6 https://www.encodeproject.org/files/ENCFF950CZX/@@download/ENCFF950CZX.bam mm10 released low read length ENCFF937DZX bed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF012BNH, ENCFF631YQS, ENCFF658BBR 908457 ENCODE Processing Pipeline 7b5115da15eeb83266e824259e4b65e7 https://www.encodeproject.org/files/ENCFF937DZX/@@download/ENCFF937DZX.bed.gz mm10 released low read length ENCFF692RAZ bed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF012BNH, ENCFF631YQS, ENCFF658BBR, ENCFF950CZX 682801 ENCODE Processing Pipeline f982b7637867e1be4cbd25103ce99573 https://www.encodeproject.org/files/ENCFF692RAZ/@@download/ENCFF692RAZ.bed.gz mm10 released low read length ENCFF633XGM bed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF950CZX 1008500 ENCODE Processing Pipeline 69f6c03e9882c3e7082c47c9cff06a80 https://www.encodeproject.org/files/ENCFF633XGM/@@download/ENCFF633XGM.bed.gz mm10 released low read length ENCFF737CRA bigBed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF937DZX 2296232 ENCODE Processing Pipeline a869c361ace740b619a3b8a349e65a07 https://www.encodeproject.org/files/ENCFF737CRA/@@download/ENCFF737CRA.bigBed mm10 released low read length ENCFF210JHE bigBed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF633XGM 2478518 ENCODE Processing Pipeline db079814adb7316e18d2077d1333c753 https://www.encodeproject.org/files/ENCFF210JHE/@@download/ENCFF210JHE.bigBed mm10 released low read length ENCFF540KXS bigBed narrowPeak peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF692RAZ 2171489 ENCODE Processing Pipeline c74f99f7523ac4d277f5df3c8dc2fa40 https://www.encodeproject.org/files/ENCFF540KXS/@@download/ENCFF540KXS.bigBed mm10 released low read length ENCFF299XWN bigWig signal p-value ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF012BNH, ENCFF631YQS, ENCFF658BBR 409197050 ENCODE Processing Pipeline 264a704d94836b23baae66c858e7d217 https://www.encodeproject.org/files/ENCFF299XWN/@@download/ENCFF299XWN.bigWig mm10 released low read length ENCFF098NFO bigWig signal p-value ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF950CZX 412062824 ENCODE Processing Pipeline 3113217485bace8fc89325f304790f81 https://www.encodeproject.org/files/ENCFF098NFO/@@download/ENCFF098NFO.bigWig mm10 released low read length ENCFF475MSF bigWig signal p-value ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF012BNH, ENCFF631YQS, ENCFF658BBR, ENCFF950CZX 506825373 ENCODE Processing Pipeline 313d28fe3ccc6755607b3a59ac4fd0db https://www.encodeproject.org/files/ENCFF475MSF/@@download/ENCFF475MSF.bigWig mm10 released low read length ENCFF308ACE bigWig fold change over control ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF012BNH, ENCFF631YQS, ENCFF658BBR 416527025 ENCODE Processing Pipeline 32b8ad53bf8c229f4fd35a2a205fe66f https://www.encodeproject.org/files/ENCFF308ACE/@@download/ENCFF308ACE.bigWig mm10 released low read length ENCFF297TTF bigWig fold change over control ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF950CZX 453932840 ENCODE Processing Pipeline 5faa18dd2a686ce874c76d9a4507a400 https://www.encodeproject.org/files/ENCFF297TTF/@@download/ENCFF297TTF.bigWig mm10 released low read length ENCFF855PPC bigWig fold change over control ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF012BNH, ENCFF631YQS, ENCFF658BBR, ENCFF950CZX 700258091 ENCODE Processing Pipeline 84c9899551d0d8d50b12731fc205f8d0 https://www.encodeproject.org/files/ENCFF855PPC/@@download/ENCFF855PPC.bigWig mm10 released low read length ENCFF554QXT bed narrowPeak replicated peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF633XGM, ENCFF692RAZ, ENCFF937DZX 781340 ENCODE Processing Pipeline bece96170b430cfc6499387a41d13177 https://www.encodeproject.org/files/ENCFF554QXT/@@download/ENCFF554QXT.bed.gz mm10 released low read length ENCFF850AEZ bigBed narrowPeak replicated peaks ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF554QXT 1976294 ENCODE Processing Pipeline 0c84dcf7c36122cdc6a95e53f378ff30 https://www.encodeproject.org/files/ENCFF850AEZ/@@download/ENCFF850AEZ.bigBed mm10 released low read length ENCFF189CVV bam alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF580JZM, ENCFF806TVZ 2062262271 ENCODE Processing Pipeline 55b9c4d6de665f5a74c57acb02235e63 https://www.encodeproject.org/files/ENCFF189CVV/@@download/ENCFF189CVV.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF366PSQ bam alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF037ZOC, ENCFF806TVZ 1923093134 ENCODE Processing Pipeline 04a2fdb83e8f87bab20f09df58306078 https://www.encodeproject.org/files/ENCFF366PSQ/@@download/ENCFF366PSQ.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF037ZOC fastq reads ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2262295805 Bing Ren, UCSD 5a7a4fb560880845b32e2b8462269847 SRA:SRR3652506 https://www.encodeproject.org/files/ENCFF037ZOC/@@download/ENCFF037ZOC.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF580JZM fastq reads ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2443951067 Bing Ren, UCSD 72a6a7198d868f40c4ed5254731b3269 SRA:SRR3652504 https://www.encodeproject.org/files/ENCFF580JZM/@@download/ENCFF580JZM.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF387BTM fastq reads ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 834131717 Bing Ren, UCSD b7a5e9e073404be7ffc6f7e69204beb7 SRA:SRR3652507 https://www.encodeproject.org/files/ENCFF387BTM/@@download/ENCFF387BTM.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF131YVS fastq reads ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 835240799 Bing Ren, UCSD 573cbd599bbf111f3332d6bf7b19277f SRA:SRR3652505 https://www.encodeproject.org/files/ENCFF131YVS/@@download/ENCFF131YVS.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF072LCQ bam unfiltered alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF018NEO, ENCFF131YVS, ENCFF580JZM 4229353961 ENCODE Processing Pipeline d3bd4fc9c20c0106b619a84b1cd05f06 https://www.encodeproject.org/files/ENCFF072LCQ/@@download/ENCFF072LCQ.bam mm10 released sequencing runs labeled as technical replicates ENCFF493APT bam unfiltered alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018NEO, ENCFF037ZOC, ENCFF387BTM 4017117880 ENCODE Processing Pipeline f40b3112df71361a7c7119ee636a8448 https://www.encodeproject.org/files/ENCFF493APT/@@download/ENCFF493APT.bam mm10 released sequencing runs labeled as technical replicates ENCFF837CRH bam alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF131YVS, ENCFF580JZM 2924218788 ENCODE Processing Pipeline ea8dc04f42b75710b6cd51cb984e7541 https://www.encodeproject.org/files/ENCFF837CRH/@@download/ENCFF837CRH.bam mm10 released sequencing runs labeled as technical replicates ENCFF956XFI bam alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF037ZOC, ENCFF387BTM 2795972550 ENCODE Processing Pipeline fac211477b4f06c39dabfa72a69aac79 https://www.encodeproject.org/files/ENCFF956XFI/@@download/ENCFF956XFI.bam mm10 released sequencing runs labeled as technical replicates ENCFF001ZRD fastq reads ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 891806146 Bing Ren, UCSD 26b60337224baa649c93524aea9bfea7 SRA:SRR3651758 https://www.encodeproject.org/files/ENCFF001ZRD/@@download/ENCFF001ZRD.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, low read depth ENCFF001ZRF fastq reads ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 992995782 Bing Ren, UCSD cdd6bd6e7cc0fde23af0c80ff28836a6 SRA:SRR3651759 https://www.encodeproject.org/files/ENCFF001ZRF/@@download/ENCFF001ZRF.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/ released low read length, low read depth ENCFF710YKT bam alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRD, ENCFF806TVZ 770157346 ENCODE Processing Pipeline e6eaa488ec73b99c62c7717374f7ca22 https://www.encodeproject.org/files/ENCFF710YKT/@@download/ENCFF710YKT.bam mm10-minimal archived low read length, low read depth ENCFF211GZM bam alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRF, ENCFF806TVZ 736520799 ENCODE Processing Pipeline cdb7cada1a3704d34dc26024ee21ced0 https://www.encodeproject.org/files/ENCFF211GZM/@@download/ENCFF211GZM.bam mm10-minimal archived low read length, low read depth ENCFF301MDV bed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF710YKT 819518 ENCODE Processing Pipeline d70c84128c68c64c743dc8d9ee4917b5 https://www.encodeproject.org/files/ENCFF301MDV/@@download/ENCFF301MDV.bed.gz mm10-minimal archived low read length, low read depth ENCFF455QBL bigBed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF315TFW 1807095 ENCODE Processing Pipeline 84ff0addbab4bdf213cb88131f16aa96 https://www.encodeproject.org/files/ENCFF455QBL/@@download/ENCFF455QBL.bigBed mm10-minimal archived low read length, low read depth ENCFF094IZX bigWig signal p-value ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF211GZM, ENCFF695ODM, ENCFF710YKT 517339700 ENCODE Processing Pipeline d63d8a8126ec7a4adf0ea99643b9d155 https://www.encodeproject.org/files/ENCFF094IZX/@@download/ENCFF094IZX.bigWig mm10-minimal archived low read length, low read depth ENCFF168TRI bigWig fold change over control ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF211GZM, ENCFF695ODM, ENCFF710YKT 580376348 ENCODE Processing Pipeline dd417517173c95d4fff632e3a54ef1f4 https://www.encodeproject.org/files/ENCFF168TRI/@@download/ENCFF168TRI.bigWig mm10-minimal archived low read length, low read depth ENCFF891YEV bigBed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF052BYL 2009336 ENCODE Processing Pipeline ca4bb8a96f70175755f984789295de0f https://www.encodeproject.org/files/ENCFF891YEV/@@download/ENCFF891YEV.bigBed mm10-minimal archived low read length, low read depth ENCFF181IPO bigWig fold change over control ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF710YKT 372618552 ENCODE Processing Pipeline 75a01ada9a771b6f820088867aab1dcb https://www.encodeproject.org/files/ENCFF181IPO/@@download/ENCFF181IPO.bigWig mm10-minimal archived low read length, low read depth ENCFF686JWX bed narrowPeak replicated peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF052BYL, ENCFF301MDV, ENCFF315TFW 591928 ENCODE Processing Pipeline 6a1aec583898b260c874fb92f8196fba https://www.encodeproject.org/files/ENCFF686JWX/@@download/ENCFF686JWX.bed.gz mm10-minimal archived low read length, low read depth ENCFF177GWA bigWig signal p-value ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF710YKT 348559586 ENCODE Processing Pipeline 5054f2ba2c56f1bd00c0ef114966a9cd https://www.encodeproject.org/files/ENCFF177GWA/@@download/ENCFF177GWA.bigWig mm10-minimal archived low read length, low read depth ENCFF052BYL bed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF211GZM, ENCFF695ODM 752899 ENCODE Processing Pipeline 8cb304331a9f6b740a75062871f38dfd https://www.encodeproject.org/files/ENCFF052BYL/@@download/ENCFF052BYL.bed.gz mm10-minimal archived low read length, low read depth ENCFF315TFW bed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204GFG, ENCFF211GZM, ENCFF695ODM, ENCFF710YKT 702277 ENCODE Processing Pipeline 0cce8648b05278a23e25c663259a8c2c https://www.encodeproject.org/files/ENCFF315TFW/@@download/ENCFF315TFW.bed.gz mm10-minimal archived low read length, low read depth ENCFF777ZTM bigWig signal p-value ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF211GZM, ENCFF695ODM 377691046 ENCODE Processing Pipeline 0bf2ac172e6a7b0b3ae90b395f27212e https://www.encodeproject.org/files/ENCFF777ZTM/@@download/ENCFF777ZTM.bigWig mm10-minimal archived low read length, low read depth ENCFF819BIP bigWig fold change over control ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204GFG, ENCFF211GZM, ENCFF695ODM 342515401 ENCODE Processing Pipeline 3648aac7103cd8cfdd58da39dc379883 https://www.encodeproject.org/files/ENCFF819BIP/@@download/ENCFF819BIP.bigWig mm10-minimal archived low read length, low read depth ENCFF642AVN bigBed narrowPeak replicated peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF686JWX 1311684 ENCODE Processing Pipeline 3ebdbd406eabc519ea856cc3fadabefc https://www.encodeproject.org/files/ENCFF642AVN/@@download/ENCFF642AVN.bigBed mm10-minimal archived low read length, low read depth ENCFF742SSJ bigBed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF301MDV 2061199 ENCODE Processing Pipeline cbf200a09cee349115759307ca191cc4 https://www.encodeproject.org/files/ENCFF742SSJ/@@download/ENCFF742SSJ.bigBed mm10-minimal archived low read length, low read depth ENCFF345CEL bam unfiltered alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRF, ENCFF018NEO 1246817873 ENCODE Processing Pipeline 2304dcbf50e6abd67c8192fee7049836 https://www.encodeproject.org/files/ENCFF345CEL/@@download/ENCFF345CEL.bam mm10 released low read length, low read depth ENCFF401DPM bam unfiltered alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRD, ENCFF018NEO 1149810997 ENCODE Processing Pipeline af783aee35b9de9726a2e8526bcd20e7 https://www.encodeproject.org/files/ENCFF401DPM/@@download/ENCFF401DPM.bam mm10 released low read length, low read depth ENCFF439HJF bam alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRF, ENCFF018NEO 736331088 ENCODE Processing Pipeline d0a0ac2ae1c3f158ad3677aacbee1e87 https://www.encodeproject.org/files/ENCFF439HJF/@@download/ENCFF439HJF.bam mm10 released low read length, low read depth ENCFF393PYK bam alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRD, ENCFF018NEO 769998415 ENCODE Processing Pipeline 88beaed7fe0451e1be32874f0d4c6a95 https://www.encodeproject.org/files/ENCFF393PYK/@@download/ENCFF393PYK.bam mm10 released low read length, low read depth ENCFF839EJA bed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439HJF, ENCFF631YQS, ENCFF658BBR 674209 ENCODE Processing Pipeline 0d29fdc2f44f68c8d3fda4e527d6b4ba https://www.encodeproject.org/files/ENCFF839EJA/@@download/ENCFF839EJA.bed.gz mm10 released low read length, low read depth ENCFF503LUA bed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF393PYK, ENCFF439HJF, ENCFF631YQS, ENCFF658BBR 703069 ENCODE Processing Pipeline a71cde18583cefad44a7356de55a118a https://www.encodeproject.org/files/ENCFF503LUA/@@download/ENCFF503LUA.bed.gz mm10 released low read length, low read depth ENCFF815AXB bed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF393PYK, ENCFF631YQS, ENCFF658BBR 820852 ENCODE Processing Pipeline d9074ba92ab693c34cb0f9884d76c9eb https://www.encodeproject.org/files/ENCFF815AXB/@@download/ENCFF815AXB.bed.gz mm10 released low read length, low read depth ENCFF745VJB bigBed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF839EJA 1822935 ENCODE Processing Pipeline c872dd8ee612f0baa71a1bdfdaf27546 https://www.encodeproject.org/files/ENCFF745VJB/@@download/ENCFF745VJB.bigBed mm10 released low read length, low read depth ENCFF546UNG bigBed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF815AXB 2066890 ENCODE Processing Pipeline 19712b49c2bbcb3a62f1d133dd7bf3fc https://www.encodeproject.org/files/ENCFF546UNG/@@download/ENCFF546UNG.bigBed mm10 released low read length, low read depth ENCFF844BLP bigBed narrowPeak peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF503LUA 1809545 ENCODE Processing Pipeline 02c0e6cef606e75390f468da94d309c3 https://www.encodeproject.org/files/ENCFF844BLP/@@download/ENCFF844BLP.bigBed mm10 released low read length, low read depth ENCFF007JHD bigWig signal p-value ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439HJF, ENCFF631YQS, ENCFF658BBR 358890180 ENCODE Processing Pipeline 370a96f6c853a60c131b90bc9d1d2408 https://www.encodeproject.org/files/ENCFF007JHD/@@download/ENCFF007JHD.bigWig mm10 released low read length, low read depth ENCFF448SVQ bigWig signal p-value ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF393PYK, ENCFF631YQS, ENCFF658BBR 439467411 ENCODE Processing Pipeline 38d6bd76582bd3e1f0b3597be1ba7840 https://www.encodeproject.org/files/ENCFF448SVQ/@@download/ENCFF448SVQ.bigWig mm10 released low read length, low read depth ENCFF785PSS bigWig signal p-value ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF393PYK, ENCFF439HJF, ENCFF631YQS, ENCFF658BBR 517804910 ENCODE Processing Pipeline 1aa6862aa538282f46685c21cb6e5880 https://www.encodeproject.org/files/ENCFF785PSS/@@download/ENCFF785PSS.bigWig mm10 released low read length, low read depth ENCFF354KBI bigWig fold change over control ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439HJF, ENCFF631YQS, ENCFF658BBR 343529704 ENCODE Processing Pipeline 9ae73c8205cabd12c6e0a21a9801b739 https://www.encodeproject.org/files/ENCFF354KBI/@@download/ENCFF354KBI.bigWig mm10 released low read length, low read depth ENCFF416JBJ bigWig fold change over control ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF393PYK, ENCFF631YQS, ENCFF658BBR 372055370 ENCODE Processing Pipeline b4c108f58d197a56ee96c7ca3ffc2614 https://www.encodeproject.org/files/ENCFF416JBJ/@@download/ENCFF416JBJ.bigWig mm10 released low read length, low read depth ENCFF827WXG bigWig fold change over control ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF393PYK, ENCFF439HJF, ENCFF631YQS, ENCFF658BBR 584895925 ENCODE Processing Pipeline d05e340b4cd506f6707c9bca04d229aa https://www.encodeproject.org/files/ENCFF827WXG/@@download/ENCFF827WXG.bigWig mm10 released low read length, low read depth ENCFF897EEM bed narrowPeak replicated peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF503LUA, ENCFF815AXB, ENCFF839EJA 587937 ENCODE Processing Pipeline a635efd49a2bd9b2c683218d2a0ad3bf https://www.encodeproject.org/files/ENCFF897EEM/@@download/ENCFF897EEM.bed.gz mm10 released low read length, low read depth ENCFF171IEJ bigBed narrowPeak replicated peaks ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF897EEM 1303810 ENCODE Processing Pipeline e460e7745c85864cf454c940f61df493 https://www.encodeproject.org/files/ENCFF171IEJ/@@download/ENCFF171IEJ.bigBed mm10 released low read length, low read depth ENCFF197BDN fastq reads ENCSR982SZZ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1031041627 Richard Myers, HAIB fd48deac42175f8890a6e4c39b71144f SRA:SRR5112363 https://www.encodeproject.org/files/ENCFF197BDN/@@download/ENCFF197BDN.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF717QTX bam unfiltered alignments ENCSR982SZZ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF197BDN 1140720746 ENCODE Processing Pipeline 7fbf4fc7229bbba2bc9229fc138bb17b https://www.encodeproject.org/files/ENCFF717QTX/@@download/ENCFF717QTX.bam mm10 released insufficient read depth for broad peaks control ENCFF352PVF bam alignments ENCSR982SZZ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF197BDN 832494382 ENCODE Processing Pipeline 53f26a715a0db2a1e033c6387b05ced7 https://www.encodeproject.org/files/ENCFF352PVF/@@download/ENCFF352PVF.bam mm10 released insufficient read depth for broad peaks control ENCFF001KFO bam alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KGA 1443041230 Bing Ren, UCSD 384164fc31a6bbf87053a0d2e41c108e https://www.encodeproject.org/files/ENCFF001KFO/@@download/ENCFF001KFO.bam mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KFP bam alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KGE 1355408450 Bing Ren, UCSD 009293aa9d70c219a7baa612bd68b758 https://www.encodeproject.org/files/ENCFF001KFP/@@download/ENCFF001KFP.bam mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KFQ bigBed broadPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWZ 1175363 Bing Ren, UCSD f8545a88c73e70140db1bb1c06e8aff9 https://www.encodeproject.org/files/ENCFF001KFQ/@@download/ENCFF001KFQ.bigBed mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KFT bigWig signal ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 62297713 Bing Ren, UCSD 9e345cfc972b73e135577a96020a7890 https://www.encodeproject.org/files/ENCFF001KFT/@@download/ENCFF001KFT.bigWig mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KGA fastq reads ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1484634941 Bing Ren, UCSD 0225e689544d6c75aa23cc47dd741507 https://www.encodeproject.org/files/ENCFF001KGA/@@download/ENCFF001KGA.fastq.gz Illumina HiSeq 2000 /files/ENCFF071UWJ/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KGE fastq reads ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1446556052 Bing Ren, UCSD 49c262c053b630fb8cb1ab684a452ac9 https://www.encodeproject.org/files/ENCFF001KGE/@@download/ENCFF001KGE.fastq.gz Illumina HiSeq 2000 /files/ENCFF659VUB/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XWZ bed broadPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 773435 Bing Ren, UCSD 3dea9781c7e55346107b7c190903ab0b https://www.encodeproject.org/files/ENCFF001XWZ/@@download/ENCFF001XWZ.bed.gz mm9 archived low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF018NHJ bam alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KGA, ENCFF018NEO 627012377 ENCODE Processing Pipeline 02d002628596eddb38a24854f2cb9066 https://www.encodeproject.org/files/ENCFF018NHJ/@@download/ENCFF018NHJ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF043VXI bam alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KGE, ENCFF018NEO 380230556 ENCODE Processing Pipeline a36124c516bce907efc5c8fcd09ee387 https://www.encodeproject.org/files/ENCFF043VXI/@@download/ENCFF043VXI.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF155YQQ bam unfiltered alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KGE, ENCFF018NEO 1372096552 ENCODE Processing Pipeline c0f00af24f5410eff7faf6df152ac455 https://www.encodeproject.org/files/ENCFF155YQQ/@@download/ENCFF155YQQ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF328HNN bam unfiltered alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KGA, ENCFF018NEO 1516773112 ENCODE Processing Pipeline d4e87f1eeb020ca23e28083484251e73 https://www.encodeproject.org/files/ENCFF328HNN/@@download/ENCFF328HNN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF562LCG bed narrowPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF018NHJ, ENCFF318EHA, ENCFF682ICT 3074063 ENCODE Processing Pipeline 6aa8bb6fc376016a2dcd91076f075f51 https://www.encodeproject.org/files/ENCFF562LCG/@@download/ENCFF562LCG.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF809XYB bigBed narrowPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF562LCG 8116105 ENCODE Processing Pipeline ecfb34f83be5978d421abd2a0b3d4f16 https://www.encodeproject.org/files/ENCFF809XYB/@@download/ENCFF809XYB.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF287FRM bed narrowPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF043VXI, ENCFF318EHA, ENCFF682ICT 2142579 ENCODE Processing Pipeline 27548d01eb059b3c32a03247ff202273 https://www.encodeproject.org/files/ENCFF287FRM/@@download/ENCFF287FRM.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF620BQA bigBed narrowPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF287FRM 5274594 ENCODE Processing Pipeline 9ca629014606bb28fab417e996cc58b4 https://www.encodeproject.org/files/ENCFF620BQA/@@download/ENCFF620BQA.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF351GWI bed narrowPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF018NHJ, ENCFF043VXI, ENCFF318EHA, ENCFF682ICT 2639461 ENCODE Processing Pipeline 7f0859efd03a56b5a4f7d7c9170c83ad https://www.encodeproject.org/files/ENCFF351GWI/@@download/ENCFF351GWI.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF497LTT bigWig signal p-value ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF018NHJ, ENCFF043VXI, ENCFF318EHA, ENCFF682ICT 486653987 ENCODE Processing Pipeline 3ae66292f890117e523dc042096f8bb0 https://www.encodeproject.org/files/ENCFF497LTT/@@download/ENCFF497LTT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF774TRF bigWig fold change over control ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF018NHJ, ENCFF318EHA, ENCFF682ICT 309451849 ENCODE Processing Pipeline b952bca38de926a2897f1246c04c79bd https://www.encodeproject.org/files/ENCFF774TRF/@@download/ENCFF774TRF.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF701ZDH bigBed narrowPeak peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF351GWI 6580241 ENCODE Processing Pipeline ad0cdbaab156400245dd8734cee0c5ea https://www.encodeproject.org/files/ENCFF701ZDH/@@download/ENCFF701ZDH.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF381CQJ bigWig signal p-value ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF018NHJ, ENCFF318EHA, ENCFF682ICT 365299894 ENCODE Processing Pipeline 5a3b358c8679c325c0089ea1e78514c6 https://www.encodeproject.org/files/ENCFF381CQJ/@@download/ENCFF381CQJ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF234BIN bigWig signal p-value ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF043VXI, ENCFF318EHA, ENCFF682ICT 359083848 ENCODE Processing Pipeline fb02ea904dd853250d9b973d452cdc48 https://www.encodeproject.org/files/ENCFF234BIN/@@download/ENCFF234BIN.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF642TKI bigWig fold change over control ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF043VXI, ENCFF318EHA, ENCFF682ICT 233777831 ENCODE Processing Pipeline a90e5b6f2af784126eb522e9b67cc4b0 https://www.encodeproject.org/files/ENCFF642TKI/@@download/ENCFF642TKI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF556TVG bed narrowPeak replicated peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF287FRM, ENCFF351GWI, ENCFF562LCG 2317469 ENCODE Processing Pipeline b508d9852af5ff9d4c45a68a8e6a20a0 https://www.encodeproject.org/files/ENCFF556TVG/@@download/ENCFF556TVG.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF111CIF bigWig fold change over control ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF018NHJ, ENCFF043VXI, ENCFF318EHA, ENCFF682ICT 455202026 ENCODE Processing Pipeline 57a589ef578fc9805f6ea61924afa4db https://www.encodeproject.org/files/ENCFF111CIF/@@download/ENCFF111CIF.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF865SQO bigBed narrowPeak replicated peaks ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF556TVG 4326336 ENCODE Processing Pipeline a37555c8571f139d646f9b451513a6a5 https://www.encodeproject.org/files/ENCFF865SQO/@@download/ENCFF865SQO.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KNA bam alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KNL 297128449 Bing Ren, UCSD e9d947b0cfc9d94042db03cd45da9ace https://www.encodeproject.org/files/ENCFF001KNA/@@download/ENCFF001KNA.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF001KNB bigBed broadPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XYA 386081 Bing Ren, UCSD 17cb559e2d969a0602ff32a74f9811ea https://www.encodeproject.org/files/ENCFF001KNB/@@download/ENCFF001KNB.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF001KNC bam alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KNM 652489691 Bing Ren, UCSD 5c4c205a5296f2ceb3ccd8101935ca7c https://www.encodeproject.org/files/ENCFF001KNC/@@download/ENCFF001KNC.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF001KND bigWig signal ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KNA, ENCFF001KNC 29675257 Bing Ren, UCSD 3076959daaddbf8f957f472b797d36b0 https://www.encodeproject.org/files/ENCFF001KND/@@download/ENCFF001KND.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF001KNL fastq reads ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 781500523 Bing Ren, UCSD 148899d0717fe970425bf860f37a45f0 https://www.encodeproject.org/files/ENCFF001KNL/@@download/ENCFF001KNL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNY/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF001KNM fastq reads ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 863475125 Bing Ren, UCSD c52bd33218ca823601349b08f91f8242 https://www.encodeproject.org/files/ENCFF001KNM/@@download/ENCFF001KNM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNX/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF001XYA bed broadPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KNA, ENCFF001KNC 251145 Bing Ren, UCSD a496cd4d539e7681f3028dec5a63d316 https://www.encodeproject.org/files/ENCFF001XYA/@@download/ENCFF001XYA.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF436PNH bam unfiltered alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KNM, ENCFF018NEO 810809193 ENCODE Processing Pipeline 9a4aee9f6bddff795c8e946a83f55e59 https://www.encodeproject.org/files/ENCFF436PNH/@@download/ENCFF436PNH.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF681VBR bam unfiltered alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KNL, ENCFF018NEO 773247953 ENCODE Processing Pipeline 3f56395858b26ab8f76bd14feb638a7d https://www.encodeproject.org/files/ENCFF681VBR/@@download/ENCFF681VBR.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF262ALD bam alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KNL, ENCFF018NEO 253874073 ENCODE Processing Pipeline af41b2234694833f8fb32015db5be3b2 https://www.encodeproject.org/files/ENCFF262ALD/@@download/ENCFF262ALD.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF538SCQ bam alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KNM, ENCFF018NEO 432072036 ENCODE Processing Pipeline 4d6fca43a410272e7b721ded0187cc8a https://www.encodeproject.org/files/ENCFF538SCQ/@@download/ENCFF538SCQ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF069QUB bed narrowPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF538SCQ 849505 ENCODE Processing Pipeline f771d3579d8fbcbb3bd0478e58a76053 https://www.encodeproject.org/files/ENCFF069QUB/@@download/ENCFF069QUB.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF854RIZ bed narrowPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF262ALD, ENCFF465JMB, ENCFF515GCB, ENCFF538SCQ 818802 ENCODE Processing Pipeline b7589489a6e48b1e627ca6778741436c https://www.encodeproject.org/files/ENCFF854RIZ/@@download/ENCFF854RIZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF248OJK bigBed narrowPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF854RIZ 2281633 ENCODE Processing Pipeline 94637e5729121d16eafa05b9ccf8a9a5 https://www.encodeproject.org/files/ENCFF248OJK/@@download/ENCFF248OJK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF829VTZ bigBed narrowPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF625DES 2579650 ENCODE Processing Pipeline 95d95c3fe8131c2b71b4a3b9cab9c57a https://www.encodeproject.org/files/ENCFF829VTZ/@@download/ENCFF829VTZ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF996HSD bigWig signal p-value ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF538SCQ 316047384 ENCODE Processing Pipeline 16d62a47ec966d67b38d012d3d3f0099 https://www.encodeproject.org/files/ENCFF996HSD/@@download/ENCFF996HSD.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF939CUS bigBed narrowPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF069QUB 2392520 ENCODE Processing Pipeline 3d079c918c2d0524c92c698bab3182ad https://www.encodeproject.org/files/ENCFF939CUS/@@download/ENCFF939CUS.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF625DES bed narrowPeak peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF262ALD, ENCFF465JMB, ENCFF515GCB 877844 ENCODE Processing Pipeline 4028d5764ca6b5b65e46f8e0314fd6e1 https://www.encodeproject.org/files/ENCFF625DES/@@download/ENCFF625DES.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF018SLX bigWig signal p-value ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF262ALD, ENCFF465JMB, ENCFF515GCB, ENCFF538SCQ 324289827 ENCODE Processing Pipeline 45b0f1a35270a51f8144da97022c8982 https://www.encodeproject.org/files/ENCFF018SLX/@@download/ENCFF018SLX.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF817XPP bigWig signal p-value ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF262ALD, ENCFF465JMB, ENCFF515GCB 243783559 ENCODE Processing Pipeline e5048f397ce1d3f06c3aa688cc8e7c1a https://www.encodeproject.org/files/ENCFF817XPP/@@download/ENCFF817XPP.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF709AJU bigWig fold change over control ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF262ALD, ENCFF465JMB, ENCFF515GCB 92675922 ENCODE Processing Pipeline 1494cc444aea54ca57ea8f973c71784a https://www.encodeproject.org/files/ENCFF709AJU/@@download/ENCFF709AJU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF615JEF bigWig fold change over control ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF538SCQ 183389811 ENCODE Processing Pipeline e814e3d3819d2c38ce8c89d06c6703db https://www.encodeproject.org/files/ENCFF615JEF/@@download/ENCFF615JEF.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF753IXB bigWig fold change over control ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF262ALD, ENCFF465JMB, ENCFF515GCB, ENCFF538SCQ 229126685 ENCODE Processing Pipeline d294d740acaa06b117a51ea17d2afe49 https://www.encodeproject.org/files/ENCFF753IXB/@@download/ENCFF753IXB.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF836HUT bigBed narrowPeak replicated peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF420PUU 2011045 ENCODE Processing Pipeline 45a213e2e5b77843b64222451d6bf325 https://www.encodeproject.org/files/ENCFF836HUT/@@download/ENCFF836HUT.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF420PUU bed narrowPeak replicated peaks ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF069QUB, ENCFF625DES, ENCFF854RIZ 947930 ENCODE Processing Pipeline a09d2c49ec2f1d2e1f82f37302d00f5f https://www.encodeproject.org/files/ENCFF420PUU/@@download/ENCFF420PUU.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF320KGQ fastq reads ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1074085655 Richard Myers, HAIB 1e743e6524539c8817bb146ada8c2a98 SRA:SRR5111179 https://www.encodeproject.org/files/ENCFF320KGQ/@@download/ENCFF320KGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF787LKE/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF024MXS fastq reads ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1407393091 Richard Myers, HAIB 0fd358519919412a579bfc33a07c063e SRA:SRR5111178 https://www.encodeproject.org/files/ENCFF024MXS/@@download/ENCFF024MXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF787LKE/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF670KVQ bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF320KGQ, ENCFF806TVZ 861215974 ENCODE Processing Pipeline 5aae8b0c47cc727a4fcb7c5fb75c94bd https://www.encodeproject.org/files/ENCFF670KVQ/@@download/ENCFF670KVQ.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF567NZA bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF024MXS, ENCFF806TVZ 1106855829 ENCODE Processing Pipeline 10bf525a791724e1a9e951c130c5019d https://www.encodeproject.org/files/ENCFF567NZA/@@download/ENCFF567NZA.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF880IOE bam unfiltered alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1475148937 ENCODE Processing Pipeline f73c770a24afa036c8b43690d3758fde https://www.encodeproject.org/files/ENCFF880IOE/@@download/ENCFF880IOE.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF682ZRK bam unfiltered alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 1133298867 ENCODE Processing Pipeline b2703240814894c4ab033995f4ff030d https://www.encodeproject.org/files/ENCFF682ZRK/@@download/ENCFF682ZRK.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF669TDH bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 861135818 ENCODE Processing Pipeline 06492bff37c8cc8b15dafefc8d0d556b https://www.encodeproject.org/files/ENCFF669TDH/@@download/ENCFF669TDH.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF748CWC bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1106721174 ENCODE Processing Pipeline 46516b80c0e373adce07483fda8b1f8c https://www.encodeproject.org/files/ENCFF748CWC/@@download/ENCFF748CWC.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF145CPH bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 320059809 ENCODE Processing Pipeline 92aaebe184a2d6753872e1dc66434be7 https://www.encodeproject.org/files/ENCFF145CPH/@@download/ENCFF145CPH.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF665MXC bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 318040832 ENCODE Processing Pipeline 26198951d656988797b2f1253c9cc25a https://www.encodeproject.org/files/ENCFF665MXC/@@download/ENCFF665MXC.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF036ACY bed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 5264286 ENCODE Processing Pipeline 602519cd7874f8d4abbfbe628a067f61 https://www.encodeproject.org/files/ENCFF036ACY/@@download/ENCFF036ACY.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF640IKM bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 308663630 ENCODE Processing Pipeline caf30eebdb1df44671eaf3539e6406ec https://www.encodeproject.org/files/ENCFF640IKM/@@download/ENCFF640IKM.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF273HAY bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 285327551 ENCODE Processing Pipeline 457b072b628ec8d2b909bb7550794602 https://www.encodeproject.org/files/ENCFF273HAY/@@download/ENCFF273HAY.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF677WOX bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 385336833 ENCODE Processing Pipeline 2660f8b15a242c0c83a4b63995f7f06e https://www.encodeproject.org/files/ENCFF677WOX/@@download/ENCFF677WOX.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF636SDF bed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 5135103 ENCODE Processing Pipeline bc7543272dc050c215c13591edec0bfc https://www.encodeproject.org/files/ENCFF636SDF/@@download/ENCFF636SDF.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF251FHP bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 569653823 ENCODE Processing Pipeline 0753352294f2fe7f79ec6444c73f082c https://www.encodeproject.org/files/ENCFF251FHP/@@download/ENCFF251FHP.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF242NJN bed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 4891991 ENCODE Processing Pipeline 9d8ec6beac5b14cc2b3196d75aa8b69b https://www.encodeproject.org/files/ENCFF242NJN/@@download/ENCFF242NJN.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF045EUI bigBed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF242NJN 10831588 ENCODE Processing Pipeline 7be662de11b29d1ab9ab040ea94abc3b https://www.encodeproject.org/files/ENCFF045EUI/@@download/ENCFF045EUI.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF260XLJ bigBed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF036ACY 11025982 ENCODE Processing Pipeline 7d19c63da459aa40802057adb8982efd https://www.encodeproject.org/files/ENCFF260XLJ/@@download/ENCFF260XLJ.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF268HZV bed narrowPeak conservative idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF036ACY, ENCFF242NJN, ENCFF547MET, ENCFF636SDF 964419 ENCODE Processing Pipeline d26c774b305c957972ed94cf1ba7c0b1 https://www.encodeproject.org/files/ENCFF268HZV/@@download/ENCFF268HZV.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF731MTR bigBed narrowPeak peaks and background as input for IDR ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF636SDF 9688369 ENCODE Processing Pipeline 0fc7fe8285cf7740de5b26e1ec7f8d6b https://www.encodeproject.org/files/ENCFF731MTR/@@download/ENCFF731MTR.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF852CPY bigBed narrowPeak conservative idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF268HZV 1946346 ENCODE Processing Pipeline ffcfd6cf34a402ae43c736446eb8f7d0 https://www.encodeproject.org/files/ENCFF852CPY/@@download/ENCFF852CPY.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF308FHB bed narrowPeak optimal idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF036ACY, ENCFF242NJN, ENCFF547MET, ENCFF636SDF 1008807 ENCODE Processing Pipeline 18c6f76162003817c8615d42b2228fbe https://www.encodeproject.org/files/ENCFF308FHB/@@download/ENCFF308FHB.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF868NVS bigBed narrowPeak optimal idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF308FHB 2011236 ENCODE Processing Pipeline 046173a88a9a3e5b331df3829732cc6c https://www.encodeproject.org/files/ENCFF868NVS/@@download/ENCFF868NVS.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF001KWZ bam alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KXE 146032491 Bing Ren, UCSD e7b9a727c230a3e10c3e0f24a415f914 https://www.encodeproject.org/files/ENCFF001KWZ/@@download/ENCFF001KWZ.bam mm9 released low read length insufficient read depth extremely low read depth ENCFF001KXA bam alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KXN 199299535 Bing Ren, UCSD 2d36e017e6dee39a41b74ed4debdcffe https://www.encodeproject.org/files/ENCFF001KXA/@@download/ENCFF001KXA.bam mm9 released low read length insufficient read depth extremely low read depth ENCFF001KXD bigWig signal ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KWZ, ENCFF001KXA 75907686 Bing Ren, UCSD bff645d73f0e4e48807a4499a54e07ed https://www.encodeproject.org/files/ENCFF001KXD/@@download/ENCFF001KXD.bigWig mm9 released low read length insufficient read depth extremely low read depth ENCFF001KXE fastq reads ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 205819642 Bing Ren, UCSD 1e3717575bcd495cdffc88f35c8c4228 https://www.encodeproject.org/files/ENCFF001KXE/@@download/ENCFF001KXE.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth extremely low read depth ENCFF001KXN fastq reads ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 264821992 Bing Ren, UCSD 857b39c6a3768ce97f6f467a82fd516d https://www.encodeproject.org/files/ENCFF001KXN/@@download/ENCFF001KXN.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth extremely low read depth ENCFF221MKR bam unfiltered alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KXN, ENCFF806TVZ 313271308 J. Michael Cherry, Stanford 354ada32bdf655fea7cb20ac1cce0efd https://www.encodeproject.org/files/ENCFF221MKR/@@download/ENCFF221MKR.bam mm10-minimal archived low read length insufficient read depth extremely low read depth ENCFF372END bam unfiltered alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KXE, ENCFF806TVZ 232364187 J. Michael Cherry, Stanford aaaa1ea63612de92634d601dcac204cb https://www.encodeproject.org/files/ENCFF372END/@@download/ENCFF372END.bam mm10-minimal archived low read length insufficient read depth extremely low read depth ENCFF288QPC bam alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXN, ENCFF018NEO 202154066 ENCODE Processing Pipeline 6372c05db61cf5c5a040faaf4aaccb14 https://www.encodeproject.org/files/ENCFF288QPC/@@download/ENCFF288QPC.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF942MHC bam alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXE, ENCFF018NEO 132905874 ENCODE Processing Pipeline b91c8926bd4401bdeca970a99ffe3de1 https://www.encodeproject.org/files/ENCFF942MHC/@@download/ENCFF942MHC.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF161EFY bam unfiltered alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXE, ENCFF018NEO 232719953 ENCODE Processing Pipeline 614ee0b8e89915c9a5502fd600342eb8 https://www.encodeproject.org/files/ENCFF161EFY/@@download/ENCFF161EFY.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF453DXT bam unfiltered alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXN, ENCFF018NEO 313840294 ENCODE Processing Pipeline eb293a250825b585c049eb1f916f9b04 https://www.encodeproject.org/files/ENCFF453DXT/@@download/ENCFF453DXT.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF144QAH fastq reads ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1648524303 Bing Ren, UCSD e2c3b10428849243f871356b557b1be0 SRA:SRR3653354 https://www.encodeproject.org/files/ENCFF144QAH/@@download/ENCFF144QAH.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released mild to moderate bottlenecking ENCFF468OSP fastq reads ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1487500390 Bing Ren, UCSD 98b7e72e5ca1f6b3bf50cf136fc49f8b SRA:SRR3653353 https://www.encodeproject.org/files/ENCFF468OSP/@@download/ENCFF468OSP.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/, /files/ENCFF788YDC/ released mild to moderate bottlenecking ENCFF958YCB bam alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF144QAH, ENCFF806TVZ 1441378853 ENCODE Processing Pipeline 85faf661f08ec87c7d56b431b832e948 https://www.encodeproject.org/files/ENCFF958YCB/@@download/ENCFF958YCB.bam mm10-minimal archived mild to moderate bottlenecking ENCFF817HZB bam alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF468OSP, ENCFF806TVZ 1375212280 ENCODE Processing Pipeline df6b2f6696854247dee6618c90182d5b https://www.encodeproject.org/files/ENCFF817HZB/@@download/ENCFF817HZB.bam mm10-minimal archived mild to moderate bottlenecking ENCFF878QMQ bed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF670KZF, ENCFF817HZB, ENCFF950FXV, ENCFF958YCB 1763647 ENCODE Processing Pipeline 89f32d1333dcccc1941d3b51b0c2f3ae https://www.encodeproject.org/files/ENCFF878QMQ/@@download/ENCFF878QMQ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF321EBA bigWig signal p-value ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF817HZB, ENCFF950FXV 574601828 ENCODE Processing Pipeline 65dfb590e0b18bbcaa25a92a68c29a8b https://www.encodeproject.org/files/ENCFF321EBA/@@download/ENCFF321EBA.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF725LCQ bigBed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF945ZTP 3702285 ENCODE Processing Pipeline 6f14797d66a10e84e4926effe68e36fc https://www.encodeproject.org/files/ENCFF725LCQ/@@download/ENCFF725LCQ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF522XGR bigWig signal p-value ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF670KZF, ENCFF958YCB 593277317 ENCODE Processing Pipeline a62956ecb52facd38f63edbc080464fc https://www.encodeproject.org/files/ENCFF522XGR/@@download/ENCFF522XGR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF945ZTP bed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF817HZB, ENCFF950FXV 1620129 ENCODE Processing Pipeline d85f767b9124da11462a79c7c9637a14 https://www.encodeproject.org/files/ENCFF945ZTP/@@download/ENCFF945ZTP.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF189GHO bigBed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF909GHT 3561625 ENCODE Processing Pipeline 1849e60438848e5e46a3f5d60203456c https://www.encodeproject.org/files/ENCFF189GHO/@@download/ENCFF189GHO.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF242JZF bigBed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF878QMQ 3943495 ENCODE Processing Pipeline b28d7d1fd9f9e734dd717356c40a1d3e https://www.encodeproject.org/files/ENCFF242JZF/@@download/ENCFF242JZF.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF909GHT bed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF670KZF, ENCFF958YCB 1528884 ENCODE Processing Pipeline 8ea593dd6592bde1f08b54e177a30e87 https://www.encodeproject.org/files/ENCFF909GHT/@@download/ENCFF909GHT.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF955JYB bigWig signal p-value ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF670KZF, ENCFF817HZB, ENCFF950FXV, ENCFF958YCB 1153162293 ENCODE Processing Pipeline 9e263136458c0a7079d1d3973f675312 https://www.encodeproject.org/files/ENCFF955JYB/@@download/ENCFF955JYB.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF794MUZ bigWig fold change over control ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF817HZB, ENCFF950FXV 646588107 ENCODE Processing Pipeline 130f91eecac3c4c95639f5546378c56a https://www.encodeproject.org/files/ENCFF794MUZ/@@download/ENCFF794MUZ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF258PFG bigWig fold change over control ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF670KZF, ENCFF958YCB 625040648 ENCODE Processing Pipeline 2fa6f0080fa313bd76f1fff954ee7d70 https://www.encodeproject.org/files/ENCFF258PFG/@@download/ENCFF258PFG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF770UND bigWig fold change over control ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF670KZF, ENCFF817HZB, ENCFF950FXV, ENCFF958YCB 1147739858 ENCODE Processing Pipeline 5c24ebf1cce3b0886fb793c502a0210d https://www.encodeproject.org/files/ENCFF770UND/@@download/ENCFF770UND.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF579APR bigBed narrowPeak replicated peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF099XCX 2829221 ENCODE Processing Pipeline bfade9ec7340a372d9c89a788751b976 https://www.encodeproject.org/files/ENCFF579APR/@@download/ENCFF579APR.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF099XCX bed narrowPeak replicated peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF878QMQ, ENCFF909GHT, ENCFF945ZTP 1188247 ENCODE Processing Pipeline 7ff8b761b3cd627bdf06f8fc5bfc4c64 https://www.encodeproject.org/files/ENCFF099XCX/@@download/ENCFF099XCX.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF094CEC bam unfiltered alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF468OSP 1972973056 ENCODE Processing Pipeline 7aca153f046e83a843ae120295b79e4a https://www.encodeproject.org/files/ENCFF094CEC/@@download/ENCFF094CEC.bam mm10 released mild to moderate bottlenecking ENCFF374ZLW bam unfiltered alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF144QAH 2172185163 ENCODE Processing Pipeline d094390979225eaf77871c27697f2911 https://www.encodeproject.org/files/ENCFF374ZLW/@@download/ENCFF374ZLW.bam mm10 released mild to moderate bottlenecking ENCFF913ZAZ bam alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF144QAH 1441054136 ENCODE Processing Pipeline ec20bcb6d1f157789d121a5b40453762 https://www.encodeproject.org/files/ENCFF913ZAZ/@@download/ENCFF913ZAZ.bam mm10 released mild to moderate bottlenecking ENCFF708TFR bam alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF468OSP 1374950066 ENCODE Processing Pipeline 95d937ea9e516d17f707c3f1bcae2338 https://www.encodeproject.org/files/ENCFF708TFR/@@download/ENCFF708TFR.bam mm10 released mild to moderate bottlenecking ENCFF305VDZ bed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF708TFR 1651821 ENCODE Processing Pipeline 3371cc861cd88894ec1432a01aea3129 https://www.encodeproject.org/files/ENCFF305VDZ/@@download/ENCFF305VDZ.bed.gz mm10 released mild to moderate bottlenecking ENCFF226MPJ bed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF741BBU, ENCFF913ZAZ 1529677 ENCODE Processing Pipeline 486375f989693faf3f9af4df7e1f0da9 https://www.encodeproject.org/files/ENCFF226MPJ/@@download/ENCFF226MPJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF865FBN bed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF708TFR, ENCFF741BBU, ENCFF913ZAZ 1822272 ENCODE Processing Pipeline dd58955a9f043e3a7ab4b60ee84e532d https://www.encodeproject.org/files/ENCFF865FBN/@@download/ENCFF865FBN.bed.gz mm10 released mild to moderate bottlenecking ENCFF969WDZ bigBed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF305VDZ 3764566 ENCODE Processing Pipeline a9b98f27b1f61d8c741c65e8f5b406f7 https://www.encodeproject.org/files/ENCFF969WDZ/@@download/ENCFF969WDZ.bigBed mm10 released mild to moderate bottlenecking ENCFF287EBJ bigBed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF226MPJ 3562340 ENCODE Processing Pipeline 8577978dbd1ec2f93269d44d0cf3264f https://www.encodeproject.org/files/ENCFF287EBJ/@@download/ENCFF287EBJ.bigBed mm10 released mild to moderate bottlenecking ENCFF367ONL bigBed narrowPeak peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF865FBN 4062196 ENCODE Processing Pipeline aac4ef0d884465a71bfe2c54f7f9de40 https://www.encodeproject.org/files/ENCFF367ONL/@@download/ENCFF367ONL.bigBed mm10 released mild to moderate bottlenecking ENCFF276VQS bigWig signal p-value ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF708TFR 683583597 ENCODE Processing Pipeline 6b2ecc29891aebadde09e5945ce195da https://www.encodeproject.org/files/ENCFF276VQS/@@download/ENCFF276VQS.bigWig mm10 released mild to moderate bottlenecking ENCFF146ODY bigWig signal p-value ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF741BBU, ENCFF913ZAZ 646289617 ENCODE Processing Pipeline 1eaf9256cead35ffd38d3f96d3e0c6ad https://www.encodeproject.org/files/ENCFF146ODY/@@download/ENCFF146ODY.bigWig mm10 released mild to moderate bottlenecking ENCFF147IYI bigWig signal p-value ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF708TFR, ENCFF741BBU, ENCFF913ZAZ 894765711 ENCODE Processing Pipeline 5fe756ca383abb59fa28e3b9c97ca8a9 https://www.encodeproject.org/files/ENCFF147IYI/@@download/ENCFF147IYI.bigWig mm10 released mild to moderate bottlenecking ENCFF064YFS bigWig fold change over control ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF708TFR 654036746 ENCODE Processing Pipeline 6de454d81c4246bbc32b28700db223c9 https://www.encodeproject.org/files/ENCFF064YFS/@@download/ENCFF064YFS.bigWig mm10 released mild to moderate bottlenecking ENCFF987KCM bigWig fold change over control ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF741BBU, ENCFF913ZAZ 621249118 ENCODE Processing Pipeline c507b3d29b683088c43f291efc9b0e41 https://www.encodeproject.org/files/ENCFF987KCM/@@download/ENCFF987KCM.bigWig mm10 released mild to moderate bottlenecking ENCFF541IJI bigWig fold change over control ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF708TFR, ENCFF741BBU, ENCFF913ZAZ 1176243915 ENCODE Processing Pipeline 4320f6a92800ffe4f68d2412596676c7 https://www.encodeproject.org/files/ENCFF541IJI/@@download/ENCFF541IJI.bigWig mm10 released mild to moderate bottlenecking ENCFF627DHT bed narrowPeak replicated peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF226MPJ, ENCFF305VDZ, ENCFF865FBN 1190876 ENCODE Processing Pipeline 7a508338358c526c71c71384c62a6db5 https://www.encodeproject.org/files/ENCFF627DHT/@@download/ENCFF627DHT.bed.gz mm10 released mild to moderate bottlenecking ENCFF957YEE bigBed narrowPeak replicated peaks ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF627DHT 2825212 ENCODE Processing Pipeline 076ddbf63e0a44820d1db57f9386e8c1 https://www.encodeproject.org/files/ENCFF957YEE/@@download/ENCFF957YEE.bigBed mm10 released mild to moderate bottlenecking ENCFF002AFM fastq reads ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1458257056 Bing Ren, UCSD 890bd4db8660938027e15cf027da09cd SRA:SRR3652552 https://www.encodeproject.org/files/ENCFF002AFM/@@download/ENCFF002AFM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF002AFP fastq reads ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1242557910 Bing Ren, UCSD 97066640e7fc078ad2f2f7f2531ca206 SRA:SRR3652551 https://www.encodeproject.org/files/ENCFF002AFP/@@download/ENCFF002AFP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF254MMR bam alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFM, ENCFF806TVZ 945004081 ENCODE Processing Pipeline 9a78443c9b5a9a8b6317844ab74cb77e https://www.encodeproject.org/files/ENCFF254MMR/@@download/ENCFF254MMR.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF157EXF bam alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFP, ENCFF806TVZ 928204932 ENCODE Processing Pipeline 50825526ffbf4df462819c373df75405 https://www.encodeproject.org/files/ENCFF157EXF/@@download/ENCFF157EXF.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF768UTS bed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF254MMR, ENCFF261VSL, ENCFF819FNM 1729424 ENCODE Processing Pipeline 21bb64ada52ac313bae9aaa8bea63975 https://www.encodeproject.org/files/ENCFF768UTS/@@download/ENCFF768UTS.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF719GNY bed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF157EXF, ENCFF261VSL, ENCFF819FNM 1582239 ENCODE Processing Pipeline f17b4d42656352e3d4b1f54e13bd5c60 https://www.encodeproject.org/files/ENCFF719GNY/@@download/ENCFF719GNY.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF676CUV bed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF157EXF, ENCFF254MMR, ENCFF261VSL, ENCFF819FNM 1711624 ENCODE Processing Pipeline a152ee2371af1e87cc1e7e30c1572bf8 https://www.encodeproject.org/files/ENCFF676CUV/@@download/ENCFF676CUV.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF687EXL bigBed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF768UTS 4540250 ENCODE Processing Pipeline 43a1781019522090eb0b39167547bed1 https://www.encodeproject.org/files/ENCFF687EXL/@@download/ENCFF687EXL.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF128NWU bigBed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF719GNY 4244252 ENCODE Processing Pipeline 31437c0068c344bfc79c8d6da0b0ae18 https://www.encodeproject.org/files/ENCFF128NWU/@@download/ENCFF128NWU.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF552LJO bigBed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF676CUV 4480151 ENCODE Processing Pipeline 25eb0a8e893d006c36dda5c53debcd55 https://www.encodeproject.org/files/ENCFF552LJO/@@download/ENCFF552LJO.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF711EHQ bigWig signal p-value ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF254MMR, ENCFF261VSL, ENCFF819FNM 441691224 ENCODE Processing Pipeline 9b1a34e2e2904d17f29d168136f00d7a https://www.encodeproject.org/files/ENCFF711EHQ/@@download/ENCFF711EHQ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF063TMP bigWig signal p-value ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF157EXF, ENCFF261VSL, ENCFF819FNM 379415818 ENCODE Processing Pipeline fbb15025c05413065a5e68a41dfa91d3 https://www.encodeproject.org/files/ENCFF063TMP/@@download/ENCFF063TMP.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF374QUX bigWig signal p-value ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF157EXF, ENCFF254MMR, ENCFF261VSL, ENCFF819FNM 513270052 ENCODE Processing Pipeline 1d11c8ff4a56ef04d0694b731335300b https://www.encodeproject.org/files/ENCFF374QUX/@@download/ENCFF374QUX.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF635INV bigWig fold change over control ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF157EXF, ENCFF261VSL, ENCFF819FNM 374024847 ENCODE Processing Pipeline 0b0bc33ced9fb7ca1c28b11ad18a8ca0 https://www.encodeproject.org/files/ENCFF635INV/@@download/ENCFF635INV.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF412YWM bigWig fold change over control ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF254MMR, ENCFF261VSL, ENCFF819FNM 369986112 ENCODE Processing Pipeline 4875ee26a40fe9ac3c6428fe39bb0a17 https://www.encodeproject.org/files/ENCFF412YWM/@@download/ENCFF412YWM.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF921NUS bigWig fold change over control ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF157EXF, ENCFF254MMR, ENCFF261VSL, ENCFF819FNM 617536275 ENCODE Processing Pipeline 5e239777352f2b961c8ecaf4ffbbe973 https://www.encodeproject.org/files/ENCFF921NUS/@@download/ENCFF921NUS.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF403QDZ bigBed narrowPeak replicated peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF357BEI 3057310 ENCODE Processing Pipeline 33a55c8057c9ca3eabd512b5cd2102d2 https://www.encodeproject.org/files/ENCFF403QDZ/@@download/ENCFF403QDZ.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF357BEI bed narrowPeak replicated peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF676CUV, ENCFF719GNY, ENCFF768UTS 1462390 ENCODE Processing Pipeline 53b38c3f8f85e355c0cb144d8f8565d3 https://www.encodeproject.org/files/ENCFF357BEI/@@download/ENCFF357BEI.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF282SDJ bam unfiltered alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFP, ENCFF018NEO 1368172500 ENCODE Processing Pipeline a5d79ee65cda01ce9f394ec28ac926a0 https://www.encodeproject.org/files/ENCFF282SDJ/@@download/ENCFF282SDJ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF235RTR bam unfiltered alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFM, ENCFF018NEO 1556204430 ENCODE Processing Pipeline e7be4f19393f4c665783287d610b25c8 https://www.encodeproject.org/files/ENCFF235RTR/@@download/ENCFF235RTR.bam mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF541VHX bam alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFP, ENCFF018NEO 928016772 ENCODE Processing Pipeline b0dc033a835f2995ac751826a12719ff https://www.encodeproject.org/files/ENCFF541VHX/@@download/ENCFF541VHX.bam mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF498EVF bam alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFM, ENCFF018NEO 944826561 ENCODE Processing Pipeline 75847fd9e2d4b35e0178a25a3e5f8a98 https://www.encodeproject.org/files/ENCFF498EVF/@@download/ENCFF498EVF.bam mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF293RLR bed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF472HVK, ENCFF541VHX, ENCFF815EAE 1582435 ENCODE Processing Pipeline 2d4c5ba60a7a62eb3ab32a2d668c0154 https://www.encodeproject.org/files/ENCFF293RLR/@@download/ENCFF293RLR.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF640DRN bed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF472HVK, ENCFF498EVF, ENCFF815EAE 1726603 ENCODE Processing Pipeline 88cb56268af2015828d13a520000f7c4 https://www.encodeproject.org/files/ENCFF640DRN/@@download/ENCFF640DRN.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF147YGI bed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF472HVK, ENCFF498EVF, ENCFF541VHX, ENCFF815EAE 1703132 ENCODE Processing Pipeline 969e45f81571e129f0dccf11775e93ef https://www.encodeproject.org/files/ENCFF147YGI/@@download/ENCFF147YGI.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF301MPS bigBed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF293RLR 4247640 ENCODE Processing Pipeline d91424d8769a26d05e53e96a0237cac5 https://www.encodeproject.org/files/ENCFF301MPS/@@download/ENCFF301MPS.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF631ICS bigBed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF640DRN 4534856 ENCODE Processing Pipeline 758e2be3eb3cac58137e9f2ae218c230 https://www.encodeproject.org/files/ENCFF631ICS/@@download/ENCFF631ICS.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF684GKL bigBed narrowPeak peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147YGI 4465549 ENCODE Processing Pipeline a89b33ae82a6675e3103aa9d643f2668 https://www.encodeproject.org/files/ENCFF684GKL/@@download/ENCFF684GKL.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF038KFF bigWig signal p-value ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF472HVK, ENCFF541VHX, ENCFF815EAE 412716470 ENCODE Processing Pipeline 8e199c51bb0dd2acc4489d7cde15893c https://www.encodeproject.org/files/ENCFF038KFF/@@download/ENCFF038KFF.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF578IFD bigWig signal p-value ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF472HVK, ENCFF498EVF, ENCFF815EAE 464464709 ENCODE Processing Pipeline c529a02c6b19b8a106728a7d3c19ab28 https://www.encodeproject.org/files/ENCFF578IFD/@@download/ENCFF578IFD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF734CDU bigWig signal p-value ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF472HVK, ENCFF498EVF, ENCFF541VHX, ENCFF815EAE 672880991 ENCODE Processing Pipeline 458dc2dd12e87e5169f8bdc99a95d8d9 https://www.encodeproject.org/files/ENCFF734CDU/@@download/ENCFF734CDU.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF800MXO bigWig fold change over control ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF472HVK, ENCFF541VHX, ENCFF815EAE 373847874 ENCODE Processing Pipeline 9e73a25fe6a4d79b05689a24ae892a63 https://www.encodeproject.org/files/ENCFF800MXO/@@download/ENCFF800MXO.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF588CCJ bigWig fold change over control ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF472HVK, ENCFF498EVF, ENCFF815EAE 369762634 ENCODE Processing Pipeline b6e7dd5f868c5fee1655011b14462474 https://www.encodeproject.org/files/ENCFF588CCJ/@@download/ENCFF588CCJ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF588AKC bigWig fold change over control ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF472HVK, ENCFF498EVF, ENCFF541VHX, ENCFF815EAE 622112654 ENCODE Processing Pipeline 33b17769c9ce1922e44465b1e42d5e5c https://www.encodeproject.org/files/ENCFF588AKC/@@download/ENCFF588AKC.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF535FJV bigBed narrowPeak replicated peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290MLR 3042542 ENCODE Processing Pipeline b214fb37417b290be3fb698cd85a355a https://www.encodeproject.org/files/ENCFF535FJV/@@download/ENCFF535FJV.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF290MLR bed narrowPeak replicated peaks ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147YGI, ENCFF293RLR, ENCFF640DRN 1456785 ENCODE Processing Pipeline 353e69a94871e68724853f3231e77e8a https://www.encodeproject.org/files/ENCFF290MLR/@@download/ENCFF290MLR.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF001NKI bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NLB 479536643 Michael Snyder, Stanford 573571939fd54e0cd61f9211684cf5de https://www.encodeproject.org/files/ENCFF001NKI/@@download/ENCFF001NKI.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NKJ bigBed narrowPeak peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIL 3832587 Michael Snyder, Stanford 770fc2d147ad472bc4697564a024626b https://www.encodeproject.org/files/ENCFF001NKJ/@@download/ENCFF001NKJ.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NKL bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NLC 429275256 Michael Snyder, Stanford afbadf233155b5a64904bc05efbf1c33 https://www.encodeproject.org/files/ENCFF001NKL/@@download/ENCFF001NKL.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NKN bigWig signal ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKI, ENCFF001NKL 326755746 Michael Snyder, Stanford 6adcf0c969dc98e2b84aba8a518085c8 https://www.encodeproject.org/files/ENCFF001NKN/@@download/ENCFF001NKN.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NLB fastq reads ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1207886069 Michael Snyder, Stanford bed597cc700dd305c35c0144b51c94d4 https://www.encodeproject.org/files/ENCFF001NLB/@@download/ENCFF001NLB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NLC fastq reads ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1107395945 Michael Snyder, Stanford 5572b34bbdc3d716fce385b058841637 https://www.encodeproject.org/files/ENCFF001NLC/@@download/ENCFF001NLC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001YIL bed narrowPeak peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKI, ENCFF001NKL 1520556 Michael Snyder, Stanford d18db7a9eb9d9900ca7f08d585be81b2 https://www.encodeproject.org/files/ENCFF001YIL/@@download/ENCFF001YIL.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF321RLO bam unfiltered alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLB, ENCFF018NEO 1324582576 ENCODE Processing Pipeline 25a00a4dd01889c4faa8c527bb515a42 https://www.encodeproject.org/files/ENCFF321RLO/@@download/ENCFF321RLO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF315QLR bam unfiltered alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLC, ENCFF018NEO 1218580438 ENCODE Processing Pipeline 04c1b6fec7fa9c85f0dc5c9a91b92d14 https://www.encodeproject.org/files/ENCFF315QLR/@@download/ENCFF315QLR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF426YVP bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLB, ENCFF018NEO 774278149 ENCODE Processing Pipeline 236270dfa40cac52b57e7b8796122888 https://www.encodeproject.org/files/ENCFF426YVP/@@download/ENCFF426YVP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF173QJM bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLC, ENCFF018NEO 742358878 ENCODE Processing Pipeline 82f466cac9aa497b28e9b2ef5ce58e80 https://www.encodeproject.org/files/ENCFF173QJM/@@download/ENCFF173QJM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF404OKH bigWig signal p-value ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF426YVP 250369410 ENCODE Processing Pipeline 3c9414e46a1ddc10b3c0e8536c6a71a3 https://www.encodeproject.org/files/ENCFF404OKH/@@download/ENCFF404OKH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF021SZL bigWig signal p-value ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF173QJM, ENCFF339ZWC, ENCFF426YVP 224280054 ENCODE Processing Pipeline f295d7ff883015804ef51bcebc507291 https://www.encodeproject.org/files/ENCFF021SZL/@@download/ENCFF021SZL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF821KDO bigWig fold change over control ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF426YVP 298443429 ENCODE Processing Pipeline ac3e7b2eb989d123d905219c95392e83 https://www.encodeproject.org/files/ENCFF821KDO/@@download/ENCFF821KDO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF186JCO bigWig signal p-value ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF173QJM, ENCFF339ZWC 239549836 ENCODE Processing Pipeline 1ee0331b8fd9bba9cefd3987bc33a351 https://www.encodeproject.org/files/ENCFF186JCO/@@download/ENCFF186JCO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF827KVQ bigWig fold change over control ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF173QJM, ENCFF339ZWC 264245959 ENCODE Processing Pipeline 24b6f141e406144eba52dda0276e3c1c https://www.encodeproject.org/files/ENCFF827KVQ/@@download/ENCFF827KVQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF388SYO bigWig fold change over control ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF173QJM, ENCFF339ZWC, ENCFF426YVP 475248107 ENCODE Processing Pipeline b6c9acac404d2a2ea7d33fa81da544dc https://www.encodeproject.org/files/ENCFF388SYO/@@download/ENCFF388SYO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF301ZTS bed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF426YVP 3713382 ENCODE Processing Pipeline 6fa284163b86d728003161e866ef8306 https://www.encodeproject.org/files/ENCFF301ZTS/@@download/ENCFF301ZTS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF641HGZ bed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF173QJM, ENCFF339ZWC 4867225 ENCODE Processing Pipeline 6107958d54f70f5cc7c825b0f545b854 https://www.encodeproject.org/files/ENCFF641HGZ/@@download/ENCFF641HGZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF927ITB bigBed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF641HGZ 10714659 ENCODE Processing Pipeline e8c2cd3507590013c69738df26e47c92 https://www.encodeproject.org/files/ENCFF927ITB/@@download/ENCFF927ITB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF213ZZG bigBed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF534XMO 11301295 ENCODE Processing Pipeline 01d56dda12136ad848128e3457541656 https://www.encodeproject.org/files/ENCFF213ZZG/@@download/ENCFF213ZZG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF021WHW bigBed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF301ZTS 7943319 ENCODE Processing Pipeline 35e9889bb567611801c15bd81a6f8972 https://www.encodeproject.org/files/ENCFF021WHW/@@download/ENCFF021WHW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF534XMO bed narrowPeak peaks and background as input for IDR ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF173QJM, ENCFF339ZWC, ENCFF426YVP 5623072 ENCODE Processing Pipeline 464942682a0b6a358e3e3db7173ca90b https://www.encodeproject.org/files/ENCFF534XMO/@@download/ENCFF534XMO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF431OGL bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF691ZAR 1648745 ENCODE Processing Pipeline db231c2e9279ff7e78682e8a5c8d3022 https://www.encodeproject.org/files/ENCFF431OGL/@@download/ENCFF431OGL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF691ZAR bed narrowPeak optimal idr thresholded peaks ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF301ZTS, ENCFF534XMO, ENCFF547MET, ENCFF641HGZ 1009902 ENCODE Processing Pipeline e579ff40e4602aac7987dabb55426151 https://www.encodeproject.org/files/ENCFF691ZAR/@@download/ENCFF691ZAR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF006QVS fastq reads ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1555554459 Bing Ren, UCSD 67055698a33549f3b8951bcfe11a8f8a SRA:SRR3651228 https://www.encodeproject.org/files/ENCFF006QVS/@@download/ENCFF006QVS.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF278KMG fastq reads ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1841546009 Bing Ren, UCSD 8de330de04c025d42e633621c828436d SRA:SRR3651229 https://www.encodeproject.org/files/ENCFF278KMG/@@download/ENCFF278KMG.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF149OCW bam alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF278KMG, ENCFF806TVZ 1340027818 ENCODE Processing Pipeline 1946212723de7a7c77e1392b7345e5fb https://www.encodeproject.org/files/ENCFF149OCW/@@download/ENCFF149OCW.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF405BGQ bam alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF006QVS, ENCFF806TVZ 1221071767 ENCODE Processing Pipeline 040bfae907b110191d55bb113839254c https://www.encodeproject.org/files/ENCFF405BGQ/@@download/ENCFF405BGQ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF458IFY bigBed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF163WVO 2888898 ENCODE Processing Pipeline b1083a8e79268c2af74241e7000b3131 https://www.encodeproject.org/files/ENCFF458IFY/@@download/ENCFF458IFY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF200MHF bed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF149OCW, ENCFF592WTG 955384 ENCODE Processing Pipeline e8846bb231e2599b91776ad152b28ad8 https://www.encodeproject.org/files/ENCFF200MHF/@@download/ENCFF200MHF.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF163WVO bed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF405BGQ, ENCFF476GUX 925113 ENCODE Processing Pipeline 9cb3e690cd12f60403fc8c149596a99f https://www.encodeproject.org/files/ENCFF163WVO/@@download/ENCFF163WVO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF004QRR bed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149OCW, ENCFF405BGQ, ENCFF476GUX, ENCFF592WTG 1048966 ENCODE Processing Pipeline 9943746479ebb252d53c6e6f80c310d8 https://www.encodeproject.org/files/ENCFF004QRR/@@download/ENCFF004QRR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF295XXW bigBed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF200MHF 2969717 ENCODE Processing Pipeline 50ad38d7c56d4f69bcc30e8e264eed18 https://www.encodeproject.org/files/ENCFF295XXW/@@download/ENCFF295XXW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF453OIV bigBed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF004QRR 3159209 ENCODE Processing Pipeline f29c3e12e89b05d763a828252ac15dbc https://www.encodeproject.org/files/ENCFF453OIV/@@download/ENCFF453OIV.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF187RUV bigWig signal p-value ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF149OCW, ENCFF592WTG 444344472 ENCODE Processing Pipeline 8cb95dcacf69c56ac76eb2e8d8e4592a https://www.encodeproject.org/files/ENCFF187RUV/@@download/ENCFF187RUV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF352PKI bigWig signal p-value ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149OCW, ENCFF405BGQ, ENCFF476GUX, ENCFF592WTG 715618308 ENCODE Processing Pipeline 41e8ad14bd1ea1048ea829480c9097f6 https://www.encodeproject.org/files/ENCFF352PKI/@@download/ENCFF352PKI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF570TDZ bigWig signal p-value ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF405BGQ, ENCFF476GUX 464127499 ENCODE Processing Pipeline dc541a3372f1da55c92cbba79c20a6af https://www.encodeproject.org/files/ENCFF570TDZ/@@download/ENCFF570TDZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF327SPT bigWig fold change over control ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF149OCW, ENCFF592WTG 498523625 ENCODE Processing Pipeline 237950fc525963651edadd6d660432f6 https://www.encodeproject.org/files/ENCFF327SPT/@@download/ENCFF327SPT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF312YIG bigWig fold change over control ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF405BGQ, ENCFF476GUX 451009899 ENCODE Processing Pipeline 0d390897ce86516a48af4e038c4cf081 https://www.encodeproject.org/files/ENCFF312YIG/@@download/ENCFF312YIG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF872GGG bigWig fold change over control ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF149OCW, ENCFF405BGQ, ENCFF476GUX, ENCFF592WTG 899902837 ENCODE Processing Pipeline e4c2bfe299707eb47b430dba98243555 https://www.encodeproject.org/files/ENCFF872GGG/@@download/ENCFF872GGG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF447GUL bed narrowPeak replicated peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF004QRR, ENCFF163WVO, ENCFF200MHF 1127489 ENCODE Processing Pipeline dff6f467b91f9dde13396ffea406591b https://www.encodeproject.org/files/ENCFF447GUL/@@download/ENCFF447GUL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF483DWG bigBed narrowPeak replicated peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF447GUL 2514841 ENCODE Processing Pipeline 85977e828a37e058f372b3cf1bb9bbbe https://www.encodeproject.org/files/ENCFF483DWG/@@download/ENCFF483DWG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF781TQN bam unfiltered alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF278KMG 2024830424 ENCODE Processing Pipeline 4665cd6cc894c387bbab0538a61f827d https://www.encodeproject.org/files/ENCFF781TQN/@@download/ENCFF781TQN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF514QED bam unfiltered alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF006QVS, ENCFF018NEO 1727170468 ENCODE Processing Pipeline ff9a46eb07017373a3e2ba2da78281f4 https://www.encodeproject.org/files/ENCFF514QED/@@download/ENCFF514QED.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF995CCN bam alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF006QVS, ENCFF018NEO 1220930302 ENCODE Processing Pipeline a374d028f156acf13f0a0505069ca6df https://www.encodeproject.org/files/ENCFF995CCN/@@download/ENCFF995CCN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF575NHJ bam alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF278KMG 1339850913 ENCODE Processing Pipeline a53b4a48f59a90de3dd58e40ed902cec https://www.encodeproject.org/files/ENCFF575NHJ/@@download/ENCFF575NHJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF022RGC bed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF575NHJ, ENCFF627RIT 947726 ENCODE Processing Pipeline 790c859c35189ac0683a36b7cccd77ab https://www.encodeproject.org/files/ENCFF022RGC/@@download/ENCFF022RGC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF391JMK bigBed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF022RGC 2951937 ENCODE Processing Pipeline a3fcc29b824f86f253c5921540f0a768 https://www.encodeproject.org/files/ENCFF391JMK/@@download/ENCFF391JMK.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF258QYI bed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF575NHJ, ENCFF627RIT, ENCFF995CCN 1087929 ENCODE Processing Pipeline bdc11182af6277d1235e6cc9f7c7076e https://www.encodeproject.org/files/ENCFF258QYI/@@download/ENCFF258QYI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF386XRH bed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF995CCN 931101 ENCODE Processing Pipeline 2ad836056c3332e8df51d1a1a7255ed6 https://www.encodeproject.org/files/ENCFF386XRH/@@download/ENCFF386XRH.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF057HOQ bigBed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF386XRH 2902986 ENCODE Processing Pipeline 00438c08fcfe857eef12b0e30b080a31 https://www.encodeproject.org/files/ENCFF057HOQ/@@download/ENCFF057HOQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF694PSC bigBed narrowPeak peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF258QYI 3257144 ENCODE Processing Pipeline 2dd5a7663bfc4507803cbd1611b3efbd https://www.encodeproject.org/files/ENCFF694PSC/@@download/ENCFF694PSC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF909DLC bigWig signal p-value ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF575NHJ, ENCFF627RIT 614028210 ENCODE Processing Pipeline b1d22b6c1c4f679e0f7f9ff4498a2b51 https://www.encodeproject.org/files/ENCFF909DLC/@@download/ENCFF909DLC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF812HBX bigWig signal p-value ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF995CCN 555822477 ENCODE Processing Pipeline a099bff565790ba8f5c9080c41041331 https://www.encodeproject.org/files/ENCFF812HBX/@@download/ENCFF812HBX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF961EYR bigWig signal p-value ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF575NHJ, ENCFF627RIT, ENCFF995CCN 845921305 ENCODE Processing Pipeline 19450c6f396f9ed5f08b0ba1652aa12f https://www.encodeproject.org/files/ENCFF961EYR/@@download/ENCFF961EYR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF351SZR bigWig fold change over control ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF575NHJ, ENCFF627RIT 524907825 ENCODE Processing Pipeline 6ba079f9bc759d5f2f2af17dd6db2dae https://www.encodeproject.org/files/ENCFF351SZR/@@download/ENCFF351SZR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF554GQK bigWig fold change over control ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF995CCN 494008400 ENCODE Processing Pipeline 1e77ee218bdfdbfebc89a4e9b788b554 https://www.encodeproject.org/files/ENCFF554GQK/@@download/ENCFF554GQK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF066PLX bed narrowPeak replicated peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF022RGC, ENCFF258QYI, ENCFF386XRH 1140236 ENCODE Processing Pipeline 53bd3399d173035f1303da877ed162ad https://www.encodeproject.org/files/ENCFF066PLX/@@download/ENCFF066PLX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF348ZCL bigWig fold change over control ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF575NHJ, ENCFF627RIT, ENCFF995CCN 948453824 ENCODE Processing Pipeline b8a48bc9ebb7d8251e46a09d68f9d5b8 https://www.encodeproject.org/files/ENCFF348ZCL/@@download/ENCFF348ZCL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF227HLP bigBed narrowPeak replicated peaks ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF066PLX 2532181 ENCODE Processing Pipeline ff8cb7beb091aaf2533d1fb87587e7d0 https://www.encodeproject.org/files/ENCFF227HLP/@@download/ENCFF227HLP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001KIV bigBed broadPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XXL 247325 Bing Ren, UCSD d7e6c229775e67af769bcf5e825483ac https://www.encodeproject.org/files/ENCFF001KIV/@@download/ENCFF001KIV.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KIW bam alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KJI 1559396009 Bing Ren, UCSD 4709a2e03edaa71ec7cdc4f3f25a9212 https://www.encodeproject.org/files/ENCFF001KIW/@@download/ENCFF001KIW.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KIX bam alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KJJ 1501345254 Bing Ren, UCSD c1fde1b773a3ff56fba49d7429ce5cd4 https://www.encodeproject.org/files/ENCFF001KIX/@@download/ENCFF001KIX.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KIY bigWig signal ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KIW, ENCFF001KIX 85526544 Bing Ren, UCSD 9706ef000df72effab6d4f7e56729c7a https://www.encodeproject.org/files/ENCFF001KIY/@@download/ENCFF001KIY.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KJI fastq reads ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1596706201 Bing Ren, UCSD 474f4281f9397483b597351e0f440333 https://www.encodeproject.org/files/ENCFF001KJI/@@download/ENCFF001KJI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KKE/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KJJ fastq reads ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1500941383 Bing Ren, UCSD 635fa253c4f33678b40196491171863e https://www.encodeproject.org/files/ENCFF001KJJ/@@download/ENCFF001KJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KKF/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XXL bed broadPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KIW, ENCFF001KIX 115568 Bing Ren, UCSD 2930489dfca48eaf1824494f0ac88d44 https://www.encodeproject.org/files/ENCFF001XXL/@@download/ENCFF001XXL.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF975HAD bam unfiltered alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KJI, ENCFF018NEO 1661398091 ENCODE Processing Pipeline 1c0829d91e25eabbc49f61923b6521ff https://www.encodeproject.org/files/ENCFF975HAD/@@download/ENCFF975HAD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF715TAZ bam unfiltered alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KJJ, ENCFF018NEO 1612662641 ENCODE Processing Pipeline 85fd45449d04e4e142e4ff4a67087fb1 https://www.encodeproject.org/files/ENCFF715TAZ/@@download/ENCFF715TAZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF343MDQ bam alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KJI, ENCFF018NEO 599616570 ENCODE Processing Pipeline c879cb186031b091aab6caf24b400ccc https://www.encodeproject.org/files/ENCFF343MDQ/@@download/ENCFF343MDQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF070XFW bam alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KJJ, ENCFF018NEO 760463283 ENCODE Processing Pipeline 86b6330cdd67624fbc5813fbf7ef3fc9 https://www.encodeproject.org/files/ENCFF070XFW/@@download/ENCFF070XFW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF710FSC bed narrowPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF343MDQ, ENCFF396FNQ, ENCFF862XUW 1257442 ENCODE Processing Pipeline 4aa3cd6f0e4286ffc1f6af2e034aa70f https://www.encodeproject.org/files/ENCFF710FSC/@@download/ENCFF710FSC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF333QTU bigBed narrowPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF103OMI 1190963 ENCODE Processing Pipeline e40f674488df9144ee2871bbf8ee33cd https://www.encodeproject.org/files/ENCFF333QTU/@@download/ENCFF333QTU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF103OMI bed narrowPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF070XFW, ENCFF396FNQ, ENCFF862XUW 552141 ENCODE Processing Pipeline 64c09c9d7bd4a1a430f3a96dbdcf9612 https://www.encodeproject.org/files/ENCFF103OMI/@@download/ENCFF103OMI.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF053QPS bed narrowPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF070XFW, ENCFF343MDQ, ENCFF396FNQ, ENCFF862XUW 165716 ENCODE Processing Pipeline ac49a7cdc8cdb8b18ade1e83d306f8be https://www.encodeproject.org/files/ENCFF053QPS/@@download/ENCFF053QPS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF025FQY bigBed narrowPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF053QPS 546646 ENCODE Processing Pipeline 0e86ed4c9e3f52f56182c027c3e729a9 https://www.encodeproject.org/files/ENCFF025FQY/@@download/ENCFF025FQY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF303TTK bigBed narrowPeak peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF710FSC 2323125 ENCODE Processing Pipeline eff4a41b0d783abd98a48e8238c0e73c https://www.encodeproject.org/files/ENCFF303TTK/@@download/ENCFF303TTK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF507ZRS bigWig signal p-value ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF343MDQ, ENCFF396FNQ, ENCFF862XUW 358986068 ENCODE Processing Pipeline 33fd2a4d46ac990bcad009af1312910b https://www.encodeproject.org/files/ENCFF507ZRS/@@download/ENCFF507ZRS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF909WKU bigWig signal p-value ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF070XFW, ENCFF396FNQ, ENCFF862XUW 325762863 ENCODE Processing Pipeline 834bb19481a554425d15c12aeefb28cd https://www.encodeproject.org/files/ENCFF909WKU/@@download/ENCFF909WKU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF422JNW bigWig signal p-value ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF070XFW, ENCFF343MDQ, ENCFF396FNQ, ENCFF862XUW 420655972 ENCODE Processing Pipeline e87baf2910e0f34aa23202ad89a9357b https://www.encodeproject.org/files/ENCFF422JNW/@@download/ENCFF422JNW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF158REH bigWig fold change over control ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF343MDQ, ENCFF396FNQ, ENCFF862XUW 268303306 ENCODE Processing Pipeline dd057c52fff5d628b3fe341a260f84cf https://www.encodeproject.org/files/ENCFF158REH/@@download/ENCFF158REH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF465JHI bigWig fold change over control ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF070XFW, ENCFF396FNQ, ENCFF862XUW 318414098 ENCODE Processing Pipeline bd183386d3dea6493e9c86396c4c4fd5 https://www.encodeproject.org/files/ENCFF465JHI/@@download/ENCFF465JHI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF324KCF bigWig fold change over control ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF070XFW, ENCFF343MDQ, ENCFF396FNQ, ENCFF862XUW 510236225 ENCODE Processing Pipeline ea118cbca7fe5d12101a61d711813903 https://www.encodeproject.org/files/ENCFF324KCF/@@download/ENCFF324KCF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF399GHX bed narrowPeak replicated peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF053QPS, ENCFF103OMI, ENCFF710FSC 125932 ENCODE Processing Pipeline 85179e9a3c47115018a527f53f04a7eb https://www.encodeproject.org/files/ENCFF399GHX/@@download/ENCFF399GHX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF250NAF bigBed narrowPeak replicated peaks ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF399GHX 398807 ENCODE Processing Pipeline d8a186d8be57542ad9d4387a8375a1b3 https://www.encodeproject.org/files/ENCFF250NAF/@@download/ENCFF250NAF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001MWQ bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MWX 1854423542 Ross Hardison, PennState 845ab09dfa1adf51a9ba375acf8803a0 https://www.encodeproject.org/files/ENCFF001MWQ/@@download/ENCFF001MWQ.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001MWR bigBed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YGY 588858 Ross Hardison, PennState 2b921bd19564bb430e1d1f8bd17037f9 https://www.encodeproject.org/files/ENCFF001MWR/@@download/ENCFF001MWR.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001MWS bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MXC 3028082483 Ross Hardison, PennState 07eea3a18d0db3e8cb104ce73cf0577d https://www.encodeproject.org/files/ENCFF001MWS/@@download/ENCFF001MWS.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001MWT bigBed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGZ 497130 Ross Hardison, PennState e232b198f810bc466275baebef29650e https://www.encodeproject.org/files/ENCFF001MWT/@@download/ENCFF001MWT.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001MWU bigBed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YHA 608683 Ross Hardison, PennState 1e2c472f4d55ef7fcb23abcbf81349d9 https://www.encodeproject.org/files/ENCFF001MWU/@@download/ENCFF001MWU.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001MWV bigWig signal ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4604312241 Ross Hardison, PennState 4bc72555f623a06b8e05f44ae0a64b12 https://www.encodeproject.org/files/ENCFF001MWV/@@download/ENCFF001MWV.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MWW bigWig signal ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 4995361447 Ross Hardison, PennState edf23a6abc1380da628969ce7bf72adf https://www.encodeproject.org/files/ENCFF001MWW/@@download/ENCFF001MWW.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MWX fastq reads ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1477514484 Ross Hardison, PennState 957ac3da3ba301bc7e1ee194b32cf332 https://www.encodeproject.org/files/ENCFF001MWX/@@download/ENCFF001MWX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWB/ released mild to moderate bottlenecking, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity ENCFF001MWY bigWig signal ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 5787483325 Ross Hardison, PennState 2ba6a08bf2ae353781a47168f6d6d2b3 https://www.encodeproject.org/files/ENCFF001MWY/@@download/ENCFF001MWY.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MXC fastq reads ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 2725715801 Ross Hardison, PennState 3b37889a8625303f5c7eb651ed7b50b3 https://www.encodeproject.org/files/ENCFF001MXC/@@download/ENCFF001MXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MWM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF001YGY bed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 295284 Ross Hardison, PennState e8ad33333522132c47c3cdf97430be0a https://www.encodeproject.org/files/ENCFF001YGY/@@download/ENCFF001YGY.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YGZ bed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 228214 Ross Hardison, PennState 049d2b05c4e52f47e059071fd0b527a8 https://www.encodeproject.org/files/ENCFF001YGZ/@@download/ENCFF001YGZ.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YHA bed broadPeak peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 302168 Ross Hardison, PennState 89f3e9bdabb736018deadd1b9253b013 https://www.encodeproject.org/files/ENCFF001YHA/@@download/ENCFF001YHA.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from ENCFF384FRU bam unfiltered alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MXC, ENCFF018NEO 2424657033 ENCODE Processing Pipeline 4c1b208344c3e3a69938a88267031024 https://www.encodeproject.org/files/ENCFF384FRU/@@download/ENCFF384FRU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF768OZY bam unfiltered alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWX, ENCFF018NEO 1786656234 ENCODE Processing Pipeline 0c842b822991ff7a260adefd85c1e813 https://www.encodeproject.org/files/ENCFF768OZY/@@download/ENCFF768OZY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF215ELT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MXC, ENCFF018NEO 1356812453 ENCODE Processing Pipeline 75c1928dbd2e6d482ac1225602aa9997 https://www.encodeproject.org/files/ENCFF215ELT/@@download/ENCFF215ELT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF334CYT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWX, ENCFF018NEO 1201426132 ENCODE Processing Pipeline 8f9bdd97a5dd54b465201561a94a534a https://www.encodeproject.org/files/ENCFF334CYT/@@download/ENCFF334CYT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF948CVE bigWig signal p-value ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 793861360 ENCODE Processing Pipeline c7851620cd927cf932873105f408d07c https://www.encodeproject.org/files/ENCFF948CVE/@@download/ENCFF948CVE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF004TBF bigWig signal p-value ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF215ELT, ENCFF339MRB, ENCFF484XJK 919446919 ENCODE Processing Pipeline 275e76c564163c71b1a341d80e3adafd https://www.encodeproject.org/files/ENCFF004TBF/@@download/ENCFF004TBF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF181TRX bigWig signal p-value ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF215ELT, ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 1259947215 ENCODE Processing Pipeline 2a49c865e40f663f27c2e16e227b82ef https://www.encodeproject.org/files/ENCFF181TRX/@@download/ENCFF181TRX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF102DYZ bigWig fold change over control ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 885039375 ENCODE Processing Pipeline 8bdb4e1bfdb64e2544870f6eaa24813e https://www.encodeproject.org/files/ENCFF102DYZ/@@download/ENCFF102DYZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF498IKF bigWig fold change over control ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF215ELT, ENCFF339MRB, ENCFF484XJK 960817777 ENCODE Processing Pipeline 599a1a6749887a2ef86563cdf1b87e06 https://www.encodeproject.org/files/ENCFF498IKF/@@download/ENCFF498IKF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF632YQC bigBed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF274VSJ 13555963 ENCODE Processing Pipeline 762e5a67a145437941615483bd0cb673 https://www.encodeproject.org/files/ENCFF632YQC/@@download/ENCFF632YQC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF302RFZ bigWig fold change over control ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF215ELT, ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 1297529969 ENCODE Processing Pipeline c11e539d5ebfa18ff722026edd4cce63 https://www.encodeproject.org/files/ENCFF302RFZ/@@download/ENCFF302RFZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF831EXK bed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF215ELT, ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 6972179 ENCODE Processing Pipeline 4647790a53517ea895f430ba60bfdc3f https://www.encodeproject.org/files/ENCFF831EXK/@@download/ENCFF831EXK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF274VSJ bed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF334CYT, ENCFF339MRB, ENCFF484XJK 6469910 ENCODE Processing Pipeline 3ac9a450602f3fc30cfecc127062e640 https://www.encodeproject.org/files/ENCFF274VSJ/@@download/ENCFF274VSJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF719RHH bigBed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF704SPV 11375218 ENCODE Processing Pipeline 5e9242472171ad8dfd4ebb4bd8dcad1a https://www.encodeproject.org/files/ENCFF719RHH/@@download/ENCFF719RHH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF993PVV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF258PQA 560571 ENCODE Processing Pipeline 70ac6db273269c0fdd63840f5ad55675 https://www.encodeproject.org/files/ENCFF993PVV/@@download/ENCFF993PVV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF056THB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF047ODZ 566784 ENCODE Processing Pipeline 94a6d1e895a5a9f2c5c1c48bdcd530d0 https://www.encodeproject.org/files/ENCFF056THB/@@download/ENCFF056THB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF047ODZ bed narrowPeak optimal idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF274VSJ, ENCFF547MET, ENCFF704SPV, ENCFF831EXK 311461 ENCODE Processing Pipeline 371c46e26088049fa7b40b4ae83b0002 https://www.encodeproject.org/files/ENCFF047ODZ/@@download/ENCFF047ODZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF704SPV bed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF215ELT, ENCFF339MRB, ENCFF484XJK 6537897 ENCODE Processing Pipeline 5917904a5c66644586395b106473fcc1 https://www.encodeproject.org/files/ENCFF704SPV/@@download/ENCFF704SPV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF749KPN bigBed narrowPeak peaks and background as input for IDR ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF831EXK 13557810 ENCODE Processing Pipeline 919e707e7d15eba618eff9c4bf05a120 https://www.encodeproject.org/files/ENCFF749KPN/@@download/ENCFF749KPN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF258PQA bed narrowPeak conservative idr thresholded peaks ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF274VSJ, ENCFF547MET, ENCFF704SPV, ENCFF831EXK 306554 ENCODE Processing Pipeline 65cb2173e2b4707f1e157c8c9ae2a252 https://www.encodeproject.org/files/ENCFF258PQA/@@download/ENCFF258PQA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF078SMC fastq reads ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1905618301 Bing Ren, UCSD b133292dd7033aed4f4e7d9439722e3e SRA:SRR3652283 https://www.encodeproject.org/files/ENCFF078SMC/@@download/ENCFF078SMC.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF318AFJ fastq reads ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2110582878 Bing Ren, UCSD d494778ac898fb1cd3905441719f19e3 SRA:SRR3652285 https://www.encodeproject.org/files/ENCFF318AFJ/@@download/ENCFF318AFJ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF788YDC fastq reads ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 518067735 Bing Ren, UCSD cc79682b72b2d866479ae1c27c7850b2 SRA:SRR3652284 https://www.encodeproject.org/files/ENCFF788YDC/@@download/ENCFF788YDC.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF950FXV bam alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF078SMC, ENCFF788YDC, ENCFF806TVZ 2440403803 ENCODE Processing Pipeline 4046a03a799e478bd3ded8968d5e76c4 https://www.encodeproject.org/files/ENCFF950FXV/@@download/ENCFF950FXV.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF670KZF bam alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF318AFJ, ENCFF806TVZ 2110851194 ENCODE Processing Pipeline a8d95a798707a0da80529ead7d3991c0 https://www.encodeproject.org/files/ENCFF670KZF/@@download/ENCFF670KZF.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF608PBR bam unfiltered alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF018NEO, ENCFF318AFJ 2911902043 ENCODE Processing Pipeline e691c1ed0db1d1462c8d8fa232dd2b87 https://www.encodeproject.org/files/ENCFF608PBR/@@download/ENCFF608PBR.bam mm10 released sequencing runs labeled as technical replicates ENCFF327VKQ bam unfiltered alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF018NEO, ENCFF078SMC, ENCFF788YDC 3341271269 ENCODE Processing Pipeline dc589453fc9e1ce82a717569e142f3da https://www.encodeproject.org/files/ENCFF327VKQ/@@download/ENCFF327VKQ.bam mm10 released sequencing runs labeled as technical replicates ENCFF741BBU bam alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF318AFJ 2110386060 ENCODE Processing Pipeline d151c23a3dc80ae747e22feb9568f3f3 https://www.encodeproject.org/files/ENCFF741BBU/@@download/ENCFF741BBU.bam mm10 released sequencing runs labeled as technical replicates ENCFF563KVK bam alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF078SMC, ENCFF788YDC 2439910309 ENCODE Processing Pipeline f40bf651a8bf1396e38fded83808b508 https://www.encodeproject.org/files/ENCFF563KVK/@@download/ENCFF563KVK.bam mm10 released sequencing runs labeled as technical replicates ENCFF001ZUX fastq reads ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 615616197 Bing Ren, UCSD d18f04f0797a1c13d853bffbec34bcf0 SRA:SRR3652405 https://www.encodeproject.org/files/ENCFF001ZUX/@@download/ENCFF001ZUX.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF001ZVB fastq reads ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 772731323 Bing Ren, UCSD 6cf33fe9a19ca2b567aecbfb9944a8ad SRA:SRR3652404 https://www.encodeproject.org/files/ENCFF001ZVB/@@download/ENCFF001ZVB.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF547PTJ bam unfiltered alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZVB, ENCFF806TVZ 1010089767 ENCODE Processing Pipeline 126af47b78a6671cbded88f61adddfe1 https://www.encodeproject.org/files/ENCFF547PTJ/@@download/ENCFF547PTJ.bam mm10-minimal archived low read length, low read depth ENCFF566JCB bam unfiltered alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUX, ENCFF806TVZ 811977531 ENCODE Processing Pipeline 8510e62e1b5276b4479dbea3ddac312e https://www.encodeproject.org/files/ENCFF566JCB/@@download/ENCFF566JCB.bam mm10-minimal archived low read length, low read depth ENCFF656MYX bam alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUX, ENCFF806TVZ 510825701 ENCODE Processing Pipeline da7ac834011971f8aafa227fdd02bebc https://www.encodeproject.org/files/ENCFF656MYX/@@download/ENCFF656MYX.bam mm10-minimal archived low read length, low read depth ENCFF844PWX bam alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZVB, ENCFF806TVZ 631649649 ENCODE Processing Pipeline 0f8a07c758f47a839f4706427437c157 https://www.encodeproject.org/files/ENCFF844PWX/@@download/ENCFF844PWX.bam mm10-minimal archived low read length, low read depth ENCFF387OWE bam unfiltered alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVB, ENCFF018NEO 1011516301 ENCODE Processing Pipeline 83c1a367d1435df831a202ae162c7dd4 https://www.encodeproject.org/files/ENCFF387OWE/@@download/ENCFF387OWE.bam mm10 released low read length, low read depth ENCFF536HXD bam unfiltered alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUX, ENCFF018NEO 813313974 ENCODE Processing Pipeline 242614931ebc01a2b2ef24a42abfbfbd https://www.encodeproject.org/files/ENCFF536HXD/@@download/ENCFF536HXD.bam mm10 released low read length, low read depth ENCFF026JTV bam alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVB, ENCFF018NEO 631436874 ENCODE Processing Pipeline 30113fe36cc734075f0f5eed6155439e https://www.encodeproject.org/files/ENCFF026JTV/@@download/ENCFF026JTV.bam mm10 released low read length, low read depth ENCFF627JLU bam alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUX, ENCFF018NEO 510648401 ENCODE Processing Pipeline 842d6104f4aa1522e970aeee10bcce0f https://www.encodeproject.org/files/ENCFF627JLU/@@download/ENCFF627JLU.bam mm10 released low read length, low read depth ENCFF001LSD bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LSJ 155611160 Bing Ren, UCSD 151dab0bf72d60b7a9204b3432dcf485 https://www.encodeproject.org/files/ENCFF001LSD/@@download/ENCFF001LSD.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSE bigBed broadPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBC 868107 Bing Ren, UCSD 63f2b0ab0504577bfaae337831d763fb https://www.encodeproject.org/files/ENCFF001LSE/@@download/ENCFF001LSE.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LSL 381352971 Bing Ren, UCSD 218b267406a96d8c64afb832985cfb44 https://www.encodeproject.org/files/ENCFF001LSF/@@download/ENCFF001LSF.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSG bigWig signal ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSD, ENCFF001LSF 49026047 Bing Ren, UCSD 67e38082fc30db952dcfc66c672ce6ed https://www.encodeproject.org/files/ENCFF001LSG/@@download/ENCFF001LSG.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSJ fastq reads ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 256034181 Bing Ren, UCSD 6db797262ef5c927e52b6891089c98d1 https://www.encodeproject.org/files/ENCFF001LSJ/@@download/ENCFF001LSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSL fastq reads ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 526849908 Bing Ren, UCSD 4bacf9cb69bbb97d7cb747def245f211 https://www.encodeproject.org/files/ENCFF001LSL/@@download/ENCFF001LSL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001YBC bed broadPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSD, ENCFF001LSF 608534 Bing Ren, UCSD f03daaae347d6a4f519fb3e9e4e63bfa https://www.encodeproject.org/files/ENCFF001YBC/@@download/ENCFF001YBC.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF686OYA bam unfiltered alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 557384856 ENCODE Processing Pipeline c4ddccf032c14aa02e8c72bef7c73f4f https://www.encodeproject.org/files/ENCFF686OYA/@@download/ENCFF686OYA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF782KAP bam unfiltered alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 241116017 ENCODE Processing Pipeline a84f9b47e2b9c23c66816108a9113f11 https://www.encodeproject.org/files/ENCFF782KAP/@@download/ENCFF782KAP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF400HUF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 84582263 ENCODE Processing Pipeline 18413e52acf78c1e2555cf61a82f5702 https://www.encodeproject.org/files/ENCFF400HUF/@@download/ENCFF400HUF.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF757SUN bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 308947255 ENCODE Processing Pipeline 5f4d44da85b63066d46815cf08cfe33c https://www.encodeproject.org/files/ENCFF757SUN/@@download/ENCFF757SUN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF184TYI bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 45584077 ENCODE Processing Pipeline d691855abc50935d1014219b09c22fc7 https://www.encodeproject.org/files/ENCFF184TYI/@@download/ENCFF184TYI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF310MUQ bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 312675789 ENCODE Processing Pipeline d81f537d870212dc7ada59505ec40d5e https://www.encodeproject.org/files/ENCFF310MUQ/@@download/ENCFF310MUQ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF897WQO bed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 5711799 ENCODE Processing Pipeline 9a9e92b484694500b117a595a232a01a https://www.encodeproject.org/files/ENCFF897WQO/@@download/ENCFF897WQO.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF640BHN bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 166296985 ENCODE Processing Pipeline 21e6feca54ec9bbe56154cde75ae16d9 https://www.encodeproject.org/files/ENCFF640BHN/@@download/ENCFF640BHN.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF243FBE bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 236163028 ENCODE Processing Pipeline 19c47b2664916493a3a8dcb7ebec68d0 https://www.encodeproject.org/files/ENCFF243FBE/@@download/ENCFF243FBE.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF036INA bed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 1626398 ENCODE Processing Pipeline 2028512c32941419556274ae692d32ce https://www.encodeproject.org/files/ENCFF036INA/@@download/ENCFF036INA.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF143XUK bigBed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF897WQO 12674520 ENCODE Processing Pipeline 816473f30ae818e0b357241e1f21bf1d https://www.encodeproject.org/files/ENCFF143XUK/@@download/ENCFF143XUK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF639STL bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 208684836 ENCODE Processing Pipeline b0d6793a59a8ea6f3ac8aff8af2e19f4 https://www.encodeproject.org/files/ENCFF639STL/@@download/ENCFF639STL.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF812MEX bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF364YJV 483850 ENCODE Processing Pipeline 861a593e8f5cbe2a9c296dbe88e1f374 https://www.encodeproject.org/files/ENCFF812MEX/@@download/ENCFF812MEX.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF526EZI bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 143279572 ENCODE Processing Pipeline 52ed316e83e133bd59883552f6bee7f0 https://www.encodeproject.org/files/ENCFF526EZI/@@download/ENCFF526EZI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF551RNB bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF714WDP 582600 ENCODE Processing Pipeline 58ed4bf8d8280fe122dac9f7b6bf6883 https://www.encodeproject.org/files/ENCFF551RNB/@@download/ENCFF551RNB.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF659CTO bed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 4994438 ENCODE Processing Pipeline 3f753996c2644f87bb31325fefed53ef https://www.encodeproject.org/files/ENCFF659CTO/@@download/ENCFF659CTO.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF901FUH bigBed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF036INA 3651719 ENCODE Processing Pipeline d82f4bed6521d08f7e31b045ed427464 https://www.encodeproject.org/files/ENCFF901FUH/@@download/ENCFF901FUH.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF364YJV bed narrowPeak conservative idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF036INA, ENCFF547MET, ENCFF659CTO, ENCFF897WQO 250763 ENCODE Processing Pipeline b082e067cd1f8a1ae68e36aec12e6e2c https://www.encodeproject.org/files/ENCFF364YJV/@@download/ENCFF364YJV.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF714WDP bed narrowPeak optimal idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF036INA, ENCFF547MET, ENCFF659CTO, ENCFF897WQO 326073 ENCODE Processing Pipeline 61e2493535ae361665ef23aedbd29310 https://www.encodeproject.org/files/ENCFF714WDP/@@download/ENCFF714WDP.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF755OXB bigBed narrowPeak peaks and background as input for IDR ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF659CTO 12383215 ENCODE Processing Pipeline 1ae64cd8b9ff630bf1ef31aab8c4887a https://www.encodeproject.org/files/ENCFF755OXB/@@download/ENCFF755OXB.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001KKI bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 874774639 Bing Ren, UCSD 59da9020d234af55c366ba2e7894b2b1 https://www.encodeproject.org/files/ENCFF001KKI/@@download/ENCFF001KKI.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity missing derived_from, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF001KKJ bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KKN 883225684 Bing Ren, UCSD c81b1248360e4cce70f556065a445d68 https://www.encodeproject.org/files/ENCFF001KKJ/@@download/ENCFF001KKJ.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF001KKK bigBed broadPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXP 354087 Bing Ren, UCSD 0f998fe6d007a1843c66257073195722 https://www.encodeproject.org/files/ENCFF001KKK/@@download/ENCFF001KKK.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF001KKL bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLC 1437722060 Bing Ren, UCSD d983dab2586aa0f921e1224d9cf722da https://www.encodeproject.org/files/ENCFF001KKL/@@download/ENCFF001KKL.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF001KKN fastq reads ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 30 single-ended 901029668 Bing Ren, UCSD 5b227b24a04da1e761f0c6c13974ad8e https://www.encodeproject.org/files/ENCFF001KKN/@@download/ENCFF001KKN.fastq.gz Illumina HiSeq 2000 /files/ENCFF044CWG/ archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, inconsistent control read length, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF001KKO bigWig signal ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KKJ, ENCFF001KKL 13746241 Bing Ren, UCSD 78501563a56367035900923d0abb1313 https://www.encodeproject.org/files/ENCFF001KKO/@@download/ENCFF001KKO.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF001KKZ fastq reads ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 971676568 Bing Ren, UCSD d5d2933431dd245c4f3f72de71b19cf7 https://www.encodeproject.org/files/ENCFF001KKZ/@@download/ENCFF001KKZ.fastq.gz Illumina HiSeq 2000 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths missing controlled_by, insufficient read length ENCFF001KLC fastq reads ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 45 single-ended 1621920178 Bing Ren, UCSD b2c3053ef39bda5e27d8fe5044114b87 https://www.encodeproject.org/files/ENCFF001KLC/@@download/ENCFF001KLC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KLI/ archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, inconsistent control read length, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF001XXP bed broadPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KKJ, ENCFF001KKL 234044 Bing Ren, UCSD 292a7e9834c945646a35dda753ca4367 https://www.encodeproject.org/files/ENCFF001XXP/@@download/ENCFF001XXP.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF620PLT bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLC, ENCFF806TVZ 756577999 ENCODE Processing Pipeline f9fad5f95d5940857ae4b4ef38862b11 https://www.encodeproject.org/files/ENCFF620PLT/@@download/ENCFF620PLT.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF542ZPJ bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KKN, ENCFF806TVZ 486006204 ENCODE Processing Pipeline d6115080455338c8f29d0983a723b6f4 https://www.encodeproject.org/files/ENCFF542ZPJ/@@download/ENCFF542ZPJ.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF081VUR bam unfiltered alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KKN, ENCFF018NEO 892905326 ENCODE Processing Pipeline 60bf3122f0372b64fed7a6a33ae8d16a https://www.encodeproject.org/files/ENCFF081VUR/@@download/ENCFF081VUR.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF390XOO bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KKN, ENCFF018NEO 486039205 ENCODE Processing Pipeline 903b07adf2f274fc66bb5b9cfe830869 https://www.encodeproject.org/files/ENCFF390XOO/@@download/ENCFF390XOO.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF686IGX bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 45 ENCFF001KLC, ENCFF018NEO 756661745 ENCODE Processing Pipeline 9a2d2a352ccde7b61b6ebea03729295b https://www.encodeproject.org/files/ENCFF686IGX/@@download/ENCFF686IGX.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF047INX bed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380OBK, ENCFF390XOO, ENCFF688WNM 784413 ENCODE Processing Pipeline 177bd81b714f419871396aa806f053f9 https://www.encodeproject.org/files/ENCFF047INX/@@download/ENCFF047INX.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF376CUR bigBed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF047INX 2350337 ENCODE Processing Pipeline 3ec46f00807219eb7871fbe2f196f58a https://www.encodeproject.org/files/ENCFF376CUR/@@download/ENCFF376CUR.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF041FZY bed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF380OBK, ENCFF686IGX, ENCFF688WNM 651990 ENCODE Processing Pipeline 88597af6540d323002f30ed1838786fe https://www.encodeproject.org/files/ENCFF041FZY/@@download/ENCFF041FZY.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF741KGM bigWig fold change over control ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF380OBK, ENCFF686IGX, ENCFF688WNM 181453717 ENCODE Processing Pipeline d437204d95ba8500496edd961049a4bb https://www.encodeproject.org/files/ENCFF741KGM/@@download/ENCFF741KGM.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF116GKS bed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF380OBK, ENCFF390XOO, ENCFF686IGX, ENCFF688WNM 703524 ENCODE Processing Pipeline 6c02b9255a4653549c2c83d5bfd9aa63 https://www.encodeproject.org/files/ENCFF116GKS/@@download/ENCFF116GKS.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF421DFY bigWig signal p-value ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF380OBK, ENCFF686IGX, ENCFF688WNM 292953592 ENCODE Processing Pipeline d16b8688e8b92ba17a062bc994f64bfd https://www.encodeproject.org/files/ENCFF421DFY/@@download/ENCFF421DFY.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF864XRT bigBed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF041FZY 2002100 ENCODE Processing Pipeline 320cf898c95ae0612e366a1c909bfdf3 https://www.encodeproject.org/files/ENCFF864XRT/@@download/ENCFF864XRT.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF742URP bigWig signal p-value ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380OBK, ENCFF390XOO, ENCFF688WNM 252816638 ENCODE Processing Pipeline 4cc7cfa4612846d22ad38c7191a32168 https://www.encodeproject.org/files/ENCFF742URP/@@download/ENCFF742URP.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF830RAE bigWig signal p-value ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF380OBK, ENCFF390XOO, ENCFF686IGX, ENCFF688WNM 296673614 ENCODE Processing Pipeline f50ff3f1004eb7a90a64714d5f59cade https://www.encodeproject.org/files/ENCFF830RAE/@@download/ENCFF830RAE.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF034YRG bigWig fold change over control ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380OBK, ENCFF390XOO, ENCFF688WNM 142431325 ENCODE Processing Pipeline fa43c01d2e0e37ee19a035c9d2545a44 https://www.encodeproject.org/files/ENCFF034YRG/@@download/ENCFF034YRG.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF674YDF bigWig fold change over control ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF380OBK, ENCFF390XOO, ENCFF686IGX, ENCFF688WNM 252585311 ENCODE Processing Pipeline 7cb7f63d06045f0fc994c3b59bd97e8d https://www.encodeproject.org/files/ENCFF674YDF/@@download/ENCFF674YDF.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF241RAP bigBed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF116GKS 2085865 ENCODE Processing Pipeline 38ea17dba02b3933f7162acb3ab53a78 https://www.encodeproject.org/files/ENCFF241RAP/@@download/ENCFF241RAP.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF887OVZ bed narrowPeak replicated peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF041FZY, ENCFF047INX, ENCFF116GKS 943476 ENCODE Processing Pipeline b3c42c77bafee683aa44006f811fe636 https://www.encodeproject.org/files/ENCFF887OVZ/@@download/ENCFF887OVZ.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF937RVL bigBed narrowPeak replicated peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF887OVZ 2027220 ENCODE Processing Pipeline 10037851b3b9f04e6a02958f4af0518f https://www.encodeproject.org/files/ENCFF937RVL/@@download/ENCFF937RVL.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF643SHV bam unfiltered alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KLC, ENCFF018NEO 1123072036 ENCODE Processing Pipeline 1d5639dee443648a822c48793411c853 https://www.encodeproject.org/files/ENCFF643SHV/@@download/ENCFF643SHV.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF442HUB bam alignments ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KLC, ENCFF018NEO 582830626 ENCODE Processing Pipeline 86af571667a74f5d26acf386f8d32c2f https://www.encodeproject.org/files/ENCFF442HUB/@@download/ENCFF442HUB.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF669AHN bed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF442HUB, ENCFF688WNM 667156 ENCODE Processing Pipeline ef39896f0875308901c592d59bf2944d https://www.encodeproject.org/files/ENCFF669AHN/@@download/ENCFF669AHN.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF880TIQ bed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF390XOO, ENCFF420EJF, ENCFF442HUB, ENCFF688WNM 699245 ENCODE Processing Pipeline 025aa4e064beade0f4af173730b0bfba https://www.encodeproject.org/files/ENCFF880TIQ/@@download/ENCFF880TIQ.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF081ALR bigBed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF669AHN 2029249 ENCODE Processing Pipeline c3717e3daf50d4a6c015895a0c72d8e8 https://www.encodeproject.org/files/ENCFF081ALR/@@download/ENCFF081ALR.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF135JUA bigBed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF880TIQ 2069860 ENCODE Processing Pipeline be7a30120a94fe3a9fe71275374002cd https://www.encodeproject.org/files/ENCFF135JUA/@@download/ENCFF135JUA.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF576FYY bigWig fold change over control ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF390XOO, ENCFF420EJF, ENCFF442HUB, ENCFF688WNM 250302260 ENCODE Processing Pipeline 573ac84487d9d94c1901393fc4ceaff6 https://www.encodeproject.org/files/ENCFF576FYY/@@download/ENCFF576FYY.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF268EEC bigBed narrowPeak replicated peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF369THO 2018940 ENCODE Processing Pipeline 6f4209f55b097b8e31a1957a9eacf1ed https://www.encodeproject.org/files/ENCFF268EEC/@@download/ENCFF268EEC.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF209TXM bed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF390XOO, ENCFF420EJF, ENCFF688WNM 778925 ENCODE Processing Pipeline bc3ab14b75a6e79d1de023ec16c9afdc https://www.encodeproject.org/files/ENCFF209TXM/@@download/ENCFF209TXM.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF324FVB bigBed narrowPeak peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF209TXM 2332941 ENCODE Processing Pipeline 323aee454de79f33dfeb8a10fc574612 https://www.encodeproject.org/files/ENCFF324FVB/@@download/ENCFF324FVB.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF329USE bigWig signal p-value ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF390XOO, ENCFF420EJF, ENCFF688WNM 258188862 ENCODE Processing Pipeline 0d423eaee7d26c8a3853a4f6c8883835 https://www.encodeproject.org/files/ENCFF329USE/@@download/ENCFF329USE.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF947FOX bigWig signal p-value ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF442HUB, ENCFF688WNM 293353354 ENCODE Processing Pipeline 7158f690d70186d991bf05aacc0be52c https://www.encodeproject.org/files/ENCFF947FOX/@@download/ENCFF947FOX.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF346ERI bigWig signal p-value ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF390XOO, ENCFF420EJF, ENCFF442HUB, ENCFF688WNM 297945830 ENCODE Processing Pipeline ef8e5f48490de8a3a741d0ef6cbb650a https://www.encodeproject.org/files/ENCFF346ERI/@@download/ENCFF346ERI.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF988SNR bigWig fold change over control ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF390XOO, ENCFF420EJF, ENCFF688WNM 143407182 ENCODE Processing Pipeline fbe43788c266d9a7f001564662a149a5 https://www.encodeproject.org/files/ENCFF988SNR/@@download/ENCFF988SNR.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF598HXN bigWig fold change over control ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF442HUB, ENCFF688WNM 178045649 ENCODE Processing Pipeline cd2413364c67c53b83e6d2ab7a1dc07a https://www.encodeproject.org/files/ENCFF598HXN/@@download/ENCFF598HXN.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF369THO bed narrowPeak replicated peaks ENCSR000CCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF209TXM, ENCFF669AHN, ENCFF880TIQ 938423 ENCODE Processing Pipeline 48a344832607bd5d72d3b34287ae5a6f https://www.encodeproject.org/files/ENCFF369THO/@@download/ENCFF369THO.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length ENCFF411WFC fastq reads ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1518922986 Bing Ren, UCSD 3cfade534031857a74bd649c633731d2 SRA:SRR3652401 https://www.encodeproject.org/files/ENCFF411WFC/@@download/ENCFF411WFC.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released mild to moderate bottlenecking ENCFF827MLN fastq reads ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1960155932 Bing Ren, UCSD 02445eee9543cf57bde0aea2af1be8a6 SRA:SRR3652400 https://www.encodeproject.org/files/ENCFF827MLN/@@download/ENCFF827MLN.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released mild to moderate bottlenecking ENCFF368MLC bam alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF411WFC, ENCFF806TVZ 1365478491 ENCODE Processing Pipeline 46c959379a2a012cc223bd2532b3bc91 https://www.encodeproject.org/files/ENCFF368MLC/@@download/ENCFF368MLC.bam mm10-minimal archived mild to moderate bottlenecking ENCFF872FCD bam alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF827MLN 1633492382 ENCODE Processing Pipeline 3c1fb584e606c2ed6f3c9efa98fb3f92 https://www.encodeproject.org/files/ENCFF872FCD/@@download/ENCFF872FCD.bam mm10-minimal archived mild to moderate bottlenecking ENCFF920TPS bed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF368MLC 516027 ENCODE Processing Pipeline 05966a138814454c27d5a78fb5510d7f https://www.encodeproject.org/files/ENCFF920TPS/@@download/ENCFF920TPS.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF944WZH bed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF368MLC, ENCFF595MDP, ENCFF872FCD 615390 ENCODE Processing Pipeline ea55b411d92983e1f3525b7b0572ff10 https://www.encodeproject.org/files/ENCFF944WZH/@@download/ENCFF944WZH.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF705JLZ bigBed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF920TPS 1690301 ENCODE Processing Pipeline f7fed163bccd7282002e40765648a7a2 https://www.encodeproject.org/files/ENCFF705JLZ/@@download/ENCFF705JLZ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF383TWT bigBed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF016TCB 1809078 ENCODE Processing Pipeline 44460634206f8214d0337946799791c6 https://www.encodeproject.org/files/ENCFF383TWT/@@download/ENCFF383TWT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF016TCB bed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF872FCD 561247 ENCODE Processing Pipeline 42d55ccf32db2dc5411c85fa89241a50 https://www.encodeproject.org/files/ENCFF016TCB/@@download/ENCFF016TCB.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF658LBO bigBed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF944WZH 1889243 ENCODE Processing Pipeline 469f45578952a505aadad3a7b359447b https://www.encodeproject.org/files/ENCFF658LBO/@@download/ENCFF658LBO.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF722JYN bigWig signal p-value ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF872FCD 619504733 ENCODE Processing Pipeline 52f574904a017c40477bcd3e25397ac8 https://www.encodeproject.org/files/ENCFF722JYN/@@download/ENCFF722JYN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF508AGH bigWig signal p-value ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF368MLC 548886700 ENCODE Processing Pipeline 1248ec0176ff6c315c5fd663517e9a98 https://www.encodeproject.org/files/ENCFF508AGH/@@download/ENCFF508AGH.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF948CHI bigWig signal p-value ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF368MLC, ENCFF595MDP, ENCFF872FCD 888785265 ENCODE Processing Pipeline bff5c3986365214763632c7be60b4cf6 https://www.encodeproject.org/files/ENCFF948CHI/@@download/ENCFF948CHI.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF580SDS bigWig fold change over control ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF872FCD 687259808 ENCODE Processing Pipeline 16266b8e977f2552305b22ef54a05134 https://www.encodeproject.org/files/ENCFF580SDS/@@download/ENCFF580SDS.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF831VUL bigWig fold change over control ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF368MLC 597329709 ENCODE Processing Pipeline 452612898a2e1b9731a3c6f0ec3642af https://www.encodeproject.org/files/ENCFF831VUL/@@download/ENCFF831VUL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF590RGY bigWig fold change over control ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF368MLC, ENCFF595MDP, ENCFF872FCD 1177892099 ENCODE Processing Pipeline a8cf24cf382cf643c2983af6d3659471 https://www.encodeproject.org/files/ENCFF590RGY/@@download/ENCFF590RGY.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF931XDX bed narrowPeak replicated peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF016TCB, ENCFF920TPS, ENCFF944WZH 665171 ENCODE Processing Pipeline b9725e6d9913419dedede3559206946b https://www.encodeproject.org/files/ENCFF931XDX/@@download/ENCFF931XDX.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF070IXI bigBed narrowPeak replicated peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF931XDX 1583242 ENCODE Processing Pipeline 6a9a0d6437ec1f6fec454fee5c628a1f https://www.encodeproject.org/files/ENCFF070IXI/@@download/ENCFF070IXI.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF512YPK bam unfiltered alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF411WFC 1924217901 ENCODE Processing Pipeline d3e6287fab7dcd01264c3c03f7a5176a https://www.encodeproject.org/files/ENCFF512YPK/@@download/ENCFF512YPK.bam mm10 released mild to moderate bottlenecking ENCFF266CNS bam alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF411WFC 1365133381 ENCODE Processing Pipeline 9c35ca356e5f6efb05404bfba5554af3 https://www.encodeproject.org/files/ENCFF266CNS/@@download/ENCFF266CNS.bam mm10 released mild to moderate bottlenecking ENCFF867CAL bam unfiltered alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF827MLN 2397905194 ENCODE Processing Pipeline ecd1af85c34f0e8922739ee1a15dcadd https://www.encodeproject.org/files/ENCFF867CAL/@@download/ENCFF867CAL.bam mm10 released mild to moderate bottlenecking ENCFF014TDL bam alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF827MLN 1633167396 ENCODE Processing Pipeline b681b0e96f20467cb80ebca2be89d5b4 https://www.encodeproject.org/files/ENCFF014TDL/@@download/ENCFF014TDL.bam mm10 released mild to moderate bottlenecking ENCFF946YBS bed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF014TDL, ENCFF548IIV 561473 ENCODE Processing Pipeline 0ddd702e3973c9902d1c9fcd78de3fc4 https://www.encodeproject.org/files/ENCFF946YBS/@@download/ENCFF946YBS.bed.gz mm10 released mild to moderate bottlenecking ENCFF704UZS bed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF266CNS, ENCFF781DUP 520645 ENCODE Processing Pipeline e710bf385e2fd0e3ba12ad7d04e4ce58 https://www.encodeproject.org/files/ENCFF704UZS/@@download/ENCFF704UZS.bed.gz mm10 released mild to moderate bottlenecking ENCFF607HBM bed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF014TDL, ENCFF266CNS, ENCFF548IIV, ENCFF781DUP 618841 ENCODE Processing Pipeline 90e160a43114f030df81b327276776fe https://www.encodeproject.org/files/ENCFF607HBM/@@download/ENCFF607HBM.bed.gz mm10 released mild to moderate bottlenecking ENCFF220HPC bigBed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF946YBS 1812093 ENCODE Processing Pipeline 9676c22874ba6e996d755498392b0d99 https://www.encodeproject.org/files/ENCFF220HPC/@@download/ENCFF220HPC.bigBed mm10 released mild to moderate bottlenecking ENCFF241YQH bigBed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF704UZS 1699150 ENCODE Processing Pipeline 79327fb9ba8c480c75c9aa82a0016eea https://www.encodeproject.org/files/ENCFF241YQH/@@download/ENCFF241YQH.bigBed mm10 released mild to moderate bottlenecking ENCFF607NJS bigBed narrowPeak peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF607HBM 1896773 ENCODE Processing Pipeline 60a2a595ed2272ed4ef3bd211e994e1f https://www.encodeproject.org/files/ENCFF607NJS/@@download/ENCFF607NJS.bigBed mm10 released mild to moderate bottlenecking ENCFF658ICC bigWig signal p-value ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF014TDL, ENCFF548IIV 615595691 ENCODE Processing Pipeline 49c6cfaa7a3d60ca252b8618089a8bb3 https://www.encodeproject.org/files/ENCFF658ICC/@@download/ENCFF658ICC.bigWig mm10 released mild to moderate bottlenecking ENCFF933EVX bigWig signal p-value ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF266CNS, ENCFF781DUP 534095772 ENCODE Processing Pipeline 761af2bc4042700e553da812fc1b41fc https://www.encodeproject.org/files/ENCFF933EVX/@@download/ENCFF933EVX.bigWig mm10 released mild to moderate bottlenecking ENCFF211YSL bigWig signal p-value ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF014TDL, ENCFF266CNS, ENCFF548IIV, ENCFF781DUP 1148546378 ENCODE Processing Pipeline e69cfd62fc86551a96cb43c11621c1ad https://www.encodeproject.org/files/ENCFF211YSL/@@download/ENCFF211YSL.bigWig mm10 released mild to moderate bottlenecking ENCFF466MOK bigWig fold change over control ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF014TDL, ENCFF548IIV 687133351 ENCODE Processing Pipeline c4cda4cb6c6521949f15a7ad840b27f7 https://www.encodeproject.org/files/ENCFF466MOK/@@download/ENCFF466MOK.bigWig mm10 released mild to moderate bottlenecking ENCFF113KNY bigWig fold change over control ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF266CNS, ENCFF781DUP 613920763 ENCODE Processing Pipeline 86515ba6253146997c15500d31ced752 https://www.encodeproject.org/files/ENCFF113KNY/@@download/ENCFF113KNY.bigWig mm10 released mild to moderate bottlenecking ENCFF682ZKK bigWig fold change over control ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF014TDL, ENCFF266CNS, ENCFF548IIV, ENCFF781DUP 1199616287 ENCODE Processing Pipeline 8dec41a8c94b191785e24b043f1a61dd https://www.encodeproject.org/files/ENCFF682ZKK/@@download/ENCFF682ZKK.bigWig mm10 released mild to moderate bottlenecking ENCFF344OEX bed narrowPeak replicated peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF607HBM, ENCFF704UZS, ENCFF946YBS 667615 ENCODE Processing Pipeline 351d395c2513aa7667612b063ef19f7b https://www.encodeproject.org/files/ENCFF344OEX/@@download/ENCFF344OEX.bed.gz mm10 released mild to moderate bottlenecking ENCFF170HPE bigBed narrowPeak replicated peaks ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF344OEX 1582234 ENCODE Processing Pipeline a053d7fc6c90b6c768917480305c0cdd https://www.encodeproject.org/files/ENCFF170HPE/@@download/ENCFF170HPE.bigBed mm10 released mild to moderate bottlenecking ENCFF293WNC fastq reads ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2811958449 Bing Ren, UCSD dc0066fe36fd4117a45dc2a68fee0cdf SRA:SRR3653290 https://www.encodeproject.org/files/ENCFF293WNC/@@download/ENCFF293WNC.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released mild to moderate bottlenecking ENCFF792BEX fastq reads ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2329670629 Bing Ren, UCSD 0c67e2400128e869eddede7ebfce3f94 SRA:SRR3653289 https://www.encodeproject.org/files/ENCFF792BEX/@@download/ENCFF792BEX.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/, /files/ENCFF961WKK/ released mild to moderate bottlenecking ENCFF103FPP bam alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF293WNC, ENCFF806TVZ 1661532321 ENCODE Processing Pipeline 775b3be38cec5abc84dab71203bc791c https://www.encodeproject.org/files/ENCFF103FPP/@@download/ENCFF103FPP.bam mm10-minimal archived mild to moderate bottlenecking ENCFF171RON bam alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF792BEX, ENCFF806TVZ 1567965018 ENCODE Processing Pipeline cf07b436042ab491cc513a50b5228641 https://www.encodeproject.org/files/ENCFF171RON/@@download/ENCFF171RON.bam mm10-minimal archived mild to moderate bottlenecking ENCFF120RCA bigBed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF054JKS 3773078 ENCODE Processing Pipeline 2d44830005eed4c439a7d5750a57407d https://www.encodeproject.org/files/ENCFF120RCA/@@download/ENCFF120RCA.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF520ZQY bed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF171RON 758856 ENCODE Processing Pipeline b416f415590d4e011d021ddb30223ab3 https://www.encodeproject.org/files/ENCFF520ZQY/@@download/ENCFF520ZQY.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF723BKH bigBed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF520ZQY 1674870 ENCODE Processing Pipeline 66335a73f5e9c10e915c877a0460e89f https://www.encodeproject.org/files/ENCFF723BKH/@@download/ENCFF723BKH.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF414DVN bigBed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF830PRN 2727402 ENCODE Processing Pipeline ee987052eae8d04333c866f01302ef50 https://www.encodeproject.org/files/ENCFF414DVN/@@download/ENCFF414DVN.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF054JKS bed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF103FPP, ENCFF171RON 1528939 ENCODE Processing Pipeline 061e5a901dcb7f53e45f241ef5f889f0 https://www.encodeproject.org/files/ENCFF054JKS/@@download/ENCFF054JKS.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF830PRN bed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF103FPP 1367106 ENCODE Processing Pipeline f11c80bd1aa80bdc919b827694dcede0 https://www.encodeproject.org/files/ENCFF830PRN/@@download/ENCFF830PRN.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF512HQP bigWig signal p-value ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF171RON 702439337 ENCODE Processing Pipeline 18f072a80044aa649bbb4bdb7d670b20 https://www.encodeproject.org/files/ENCFF512HQP/@@download/ENCFF512HQP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF104LOG bigWig signal p-value ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF103FPP 597330656 ENCODE Processing Pipeline 7bf100f103c9b88514e700e91dfa5f84 https://www.encodeproject.org/files/ENCFF104LOG/@@download/ENCFF104LOG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF430GUG bigWig signal p-value ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF103FPP, ENCFF171RON 1049772446 ENCODE Processing Pipeline 8bfa82540d99aa607cc9777cb9bf418a https://www.encodeproject.org/files/ENCFF430GUG/@@download/ENCFF430GUG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF439RAC bigWig fold change over control ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF171RON 751656314 ENCODE Processing Pipeline cf5b41ca6af676a64d403b36f5c25c18 https://www.encodeproject.org/files/ENCFF439RAC/@@download/ENCFF439RAC.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF982TZM bigWig fold change over control ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF103FPP 795275626 ENCODE Processing Pipeline bb077dd8198052f4b0b57b2eebc23e95 https://www.encodeproject.org/files/ENCFF982TZM/@@download/ENCFF982TZM.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF754QWO bigWig fold change over control ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF103FPP, ENCFF171RON 1332308334 ENCODE Processing Pipeline 2af9bba901b06f5e6125b6e1a7b143e7 https://www.encodeproject.org/files/ENCFF754QWO/@@download/ENCFF754QWO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF317RNU bed narrowPeak replicated peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF054JKS, ENCFF520ZQY, ENCFF830PRN 695171 ENCODE Processing Pipeline 1245dc5e688b3c29daaec9e499e34e5c https://www.encodeproject.org/files/ENCFF317RNU/@@download/ENCFF317RNU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF245EES bigBed narrowPeak replicated peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF317RNU 1636400 ENCODE Processing Pipeline 897b76666f2fa29f6327acdec17545ff https://www.encodeproject.org/files/ENCFF245EES/@@download/ENCFF245EES.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF404GSR bam unfiltered alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF792BEX 3129060904 ENCODE Processing Pipeline 99ae61322dc672b9a1f6eb270a294d49 https://www.encodeproject.org/files/ENCFF404GSR/@@download/ENCFF404GSR.bam mm10 released mild to moderate bottlenecking ENCFF063DUA bam unfiltered alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF293WNC 3705416292 ENCODE Processing Pipeline 39972faad4244426a6bcab17dfd60db0 https://www.encodeproject.org/files/ENCFF063DUA/@@download/ENCFF063DUA.bam mm10 released mild to moderate bottlenecking ENCFF861QSV bam alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF792BEX 1567344410 ENCODE Processing Pipeline e0e7be52ea70d2743ed6c83195983ff2 https://www.encodeproject.org/files/ENCFF861QSV/@@download/ENCFF861QSV.bam mm10 released mild to moderate bottlenecking ENCFF143TPR bam alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF293WNC 1660921591 ENCODE Processing Pipeline 9f5904954563bbca576ff7cf90c079de https://www.encodeproject.org/files/ENCFF143TPR/@@download/ENCFF143TPR.bam mm10 released mild to moderate bottlenecking ENCFF867BEC bed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF570IJH, ENCFF861QSV 832150 ENCODE Processing Pipeline 3b9ae9cb8db61c8173a1cbf0a3c3cb28 https://www.encodeproject.org/files/ENCFF867BEC/@@download/ENCFF867BEC.bed.gz mm10 released mild to moderate bottlenecking ENCFF853SPL bed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF143TPR, ENCFF387WDC 1368755 ENCODE Processing Pipeline 6498e4e28f1a74df620118005b2a884c https://www.encodeproject.org/files/ENCFF853SPL/@@download/ENCFF853SPL.bed.gz mm10 released mild to moderate bottlenecking ENCFF970SDO bed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF143TPR, ENCFF387WDC, ENCFF570IJH, ENCFF861QSV 1529788 ENCODE Processing Pipeline 42d9f9c56f988cc9fdf07cc8becdcb24 https://www.encodeproject.org/files/ENCFF970SDO/@@download/ENCFF970SDO.bed.gz mm10 released mild to moderate bottlenecking ENCFF362RVC bigBed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF867BEC 1795075 ENCODE Processing Pipeline c480bd0a7b8e46697cf2b04e07371678 https://www.encodeproject.org/files/ENCFF362RVC/@@download/ENCFF362RVC.bigBed mm10 released mild to moderate bottlenecking ENCFF556LUH bigBed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF853SPL 2733707 ENCODE Processing Pipeline 22bc36b976305193fb8779acf0a29b88 https://www.encodeproject.org/files/ENCFF556LUH/@@download/ENCFF556LUH.bigBed mm10 released mild to moderate bottlenecking ENCFF204BBZ bigBed narrowPeak peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF970SDO 3778623 ENCODE Processing Pipeline f55e8c73048c7c96a0d184ee5acbf5f7 https://www.encodeproject.org/files/ENCFF204BBZ/@@download/ENCFF204BBZ.bigBed mm10 released mild to moderate bottlenecking ENCFF046REH bigWig signal p-value ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF570IJH, ENCFF861QSV 620104641 ENCODE Processing Pipeline 0d625023220a58c955004b0a98f5a992 https://www.encodeproject.org/files/ENCFF046REH/@@download/ENCFF046REH.bigWig mm10 released mild to moderate bottlenecking ENCFF282PVW bigWig signal p-value ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF143TPR, ENCFF387WDC 751456028 ENCODE Processing Pipeline 218767db99e072a5081f3bf14739f6ce https://www.encodeproject.org/files/ENCFF282PVW/@@download/ENCFF282PVW.bigWig mm10 released mild to moderate bottlenecking ENCFF074RIR bigWig signal p-value ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF143TPR, ENCFF387WDC, ENCFF570IJH, ENCFF861QSV 930170432 ENCODE Processing Pipeline 1876649804e0bbee47ab36918ff59e6f https://www.encodeproject.org/files/ENCFF074RIR/@@download/ENCFF074RIR.bigWig mm10 released mild to moderate bottlenecking ENCFF269UQO bigWig fold change over control ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF570IJH, ENCFF861QSV 707113026 ENCODE Processing Pipeline a58f64db85c585a236c2ded13d2f752f https://www.encodeproject.org/files/ENCFF269UQO/@@download/ENCFF269UQO.bigWig mm10 released mild to moderate bottlenecking ENCFF577OCW bigWig fold change over control ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF143TPR, ENCFF387WDC 796454338 ENCODE Processing Pipeline 7570344cbead9abb52bc0585e3be1a44 https://www.encodeproject.org/files/ENCFF577OCW/@@download/ENCFF577OCW.bigWig mm10 released mild to moderate bottlenecking ENCFF951TKF bigWig fold change over control ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF143TPR, ENCFF387WDC, ENCFF570IJH, ENCFF861QSV 1332616866 ENCODE Processing Pipeline 98eb8747bd0ee08090db9145f79d8929 https://www.encodeproject.org/files/ENCFF951TKF/@@download/ENCFF951TKF.bigWig mm10 released mild to moderate bottlenecking ENCFF425DTV bed narrowPeak replicated peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF853SPL, ENCFF867BEC, ENCFF970SDO 698695 ENCODE Processing Pipeline 2ad8b351daced8b2fca052a0cda2a409 https://www.encodeproject.org/files/ENCFF425DTV/@@download/ENCFF425DTV.bed.gz mm10 released mild to moderate bottlenecking ENCFF092YHL bigBed narrowPeak replicated peaks ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF425DTV 1650096 ENCODE Processing Pipeline af4e6d1f01e8c024273151529fac3ba2 https://www.encodeproject.org/files/ENCFF092YHL/@@download/ENCFF092YHL.bigBed mm10 released mild to moderate bottlenecking ENCFF632OMK bam alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF219CDV, ENCFF693KKN, ENCFF806TVZ, ENCFF990VQL 2482102050 ENCODE Processing Pipeline 436fce164b8dff40501408db2bbedb92 https://www.encodeproject.org/files/ENCFF632OMK/@@download/ENCFF632OMK.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF882PMB bam alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF248LJY, ENCFF391TJE, ENCFF806TVZ 2715828805 ENCODE Processing Pipeline 6b437c09b7b3658ae92f59731213a8e9 https://www.encodeproject.org/files/ENCFF882PMB/@@download/ENCFF882PMB.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF248LJY fastq reads ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 885089537 Bing Ren, UCSD d7cd158f294665cf66d509bcc98f1c16 SRA:SRR3651344 https://www.encodeproject.org/files/ENCFF248LJY/@@download/ENCFF248LJY.fastq.gz Illumina HiSeq 2500 /files/ENCFF037ZOC/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF990VQL fastq reads ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 3 50 single-ended 1823252863 Bing Ren, UCSD c9373cf16b106ce631aa7f117886c3d8 SRA:SRR3651341 https://www.encodeproject.org/files/ENCFF990VQL/@@download/ENCFF990VQL.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF693KKN fastq reads ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 2368257190 Bing Ren, UCSD e64c18a9a57bee7b9eabcb2ba6994774 SRA:SRR3651342 https://www.encodeproject.org/files/ENCFF693KKN/@@download/ENCFF693KKN.fastq.gz Illumina HiSeq 2500 /files/ENCFF580JZM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF219CDV fastq reads ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3521603899 Bing Ren, UCSD 4dccd0c431bd56351c88512936ab4f3f SRA:SRR3651343 https://www.encodeproject.org/files/ENCFF219CDV/@@download/ENCFF219CDV.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF391TJE fastq reads ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2877362473 Bing Ren, UCSD 56da4b3b537969711f4c9a7b7c107d8b SRA:SRR3651345 https://www.encodeproject.org/files/ENCFF391TJE/@@download/ENCFF391TJE.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF882SKM bed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF632OMK 3183398 ENCODE Processing Pipeline 4f22697326b0dd8c0737ffd790f4200d https://www.encodeproject.org/files/ENCFF882SKM/@@download/ENCFF882SKM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF198AVA bigBed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF304TDR 5887457 ENCODE Processing Pipeline 8b55cc0a723892389d106c017d04375e https://www.encodeproject.org/files/ENCFF198AVA/@@download/ENCFF198AVA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF318IIY bigBed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF882SKM 7016004 ENCODE Processing Pipeline 64ff99a539e8f4c7b7abbbcc768083ba https://www.encodeproject.org/files/ENCFF318IIY/@@download/ENCFF318IIY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF304TDR bed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF882PMB 2637603 ENCODE Processing Pipeline 904c0207a24b32a8b9bd5f2808c493c6 https://www.encodeproject.org/files/ENCFF304TDR/@@download/ENCFF304TDR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF334EBF bed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF632OMK, ENCFF882PMB 2719112 ENCODE Processing Pipeline e7e99530418c9eef0383e7894a718a38 https://www.encodeproject.org/files/ENCFF334EBF/@@download/ENCFF334EBF.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF230LOF bigBed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF334EBF 5909743 ENCODE Processing Pipeline 29a8b8e205e6a38dfb174da893ab4e27 https://www.encodeproject.org/files/ENCFF230LOF/@@download/ENCFF230LOF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF562QAY bigWig signal p-value ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF882PMB 934466818 ENCODE Processing Pipeline abfbf64f2f34f797daee32c9f19f1359 https://www.encodeproject.org/files/ENCFF562QAY/@@download/ENCFF562QAY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF454SXA bigWig signal p-value ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF632OMK 741862054 ENCODE Processing Pipeline c204193cfe7c2ac3da5e11a77e08bb18 https://www.encodeproject.org/files/ENCFF454SXA/@@download/ENCFF454SXA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF651RLE bigWig signal p-value ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF632OMK, ENCFF882PMB 1163338043 ENCODE Processing Pipeline 69023a88e0915d0721eb7d32a3b12fba https://www.encodeproject.org/files/ENCFF651RLE/@@download/ENCFF651RLE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF539EZI bigWig fold change over control ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF882PMB 1027987362 ENCODE Processing Pipeline 1aea7d177179fd93341c57614561564f https://www.encodeproject.org/files/ENCFF539EZI/@@download/ENCFF539EZI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF769YGF bigWig fold change over control ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF632OMK 944206712 ENCODE Processing Pipeline b0c02cceaa05bea077c5b0afba3a26db https://www.encodeproject.org/files/ENCFF769YGF/@@download/ENCFF769YGF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF987EWQ bed narrowPeak replicated peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF304TDR, ENCFF334EBF, ENCFF882SKM 2670821 ENCODE Processing Pipeline 10a3e17059f56588a36ebfc9560eded2 https://www.encodeproject.org/files/ENCFF987EWQ/@@download/ENCFF987EWQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF337MJZ bigBed narrowPeak replicated peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF987EWQ 4664176 ENCODE Processing Pipeline a4d642f46ac761e6af669a9de66242f0 https://www.encodeproject.org/files/ENCFF337MJZ/@@download/ENCFF337MJZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF378EIL bigWig fold change over control ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF632OMK, ENCFF882PMB 1500797433 ENCODE Processing Pipeline 0ee12985172999839fa74da824794bbe https://www.encodeproject.org/files/ENCFF378EIL/@@download/ENCFF378EIL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF331QOY bam unfiltered alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF248LJY, ENCFF391TJE 4435523137 ENCODE Processing Pipeline 89705531c70153189ee8eae11be29fd5 https://www.encodeproject.org/files/ENCFF331QOY/@@download/ENCFF331QOY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF874RFY bam alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF248LJY, ENCFF391TJE 2715110577 ENCODE Processing Pipeline d6e90ee25f4e0c164ef29003b0149741 https://www.encodeproject.org/files/ENCFF874RFY/@@download/ENCFF874RFY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF218HVJ bam unfiltered alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF219CDV, ENCFF693KKN, ENCFF990VQL 8186830017 ENCODE Processing Pipeline ffc01e2aa0dd14184481d1da50fc92e3 https://www.encodeproject.org/files/ENCFF218HVJ/@@download/ENCFF218HVJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF686DEV bam alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF219CDV, ENCFF693KKN, ENCFF990VQL 2481495924 ENCODE Processing Pipeline 2c3bf5413530575e7b7fce2605fe4749 https://www.encodeproject.org/files/ENCFF686DEV/@@download/ENCFF686DEV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF108QXY bed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF686DEV, ENCFF837CRH 3156291 ENCODE Processing Pipeline cf4141d2f157bb163973b07d52a3a0da https://www.encodeproject.org/files/ENCFF108QXY/@@download/ENCFF108QXY.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF665LFX bed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF686DEV, ENCFF837CRH, ENCFF874RFY, ENCFF956XFI 3002310 ENCODE Processing Pipeline 3852129c452298862986ffa2d2e814c8 https://www.encodeproject.org/files/ENCFF665LFX/@@download/ENCFF665LFX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF533QUG bed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF874RFY, ENCFF956XFI 2598543 ENCODE Processing Pipeline d90321dea9f0f1eb0bff657598ea3af2 https://www.encodeproject.org/files/ENCFF533QUG/@@download/ENCFF533QUG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF681NVN bigBed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF533QUG 5803266 ENCODE Processing Pipeline 7f54b0b5af5fbb13d223c2a596fb12b6 https://www.encodeproject.org/files/ENCFF681NVN/@@download/ENCFF681NVN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF157MVV bigBed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF108QXY 7031160 ENCODE Processing Pipeline 1c306f7cd973f5688355b6661d54fecc https://www.encodeproject.org/files/ENCFF157MVV/@@download/ENCFF157MVV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF408TSJ bigBed narrowPeak peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF665LFX 6626062 ENCODE Processing Pipeline f35fb321c75b8a5ab2f82d34defe5305 https://www.encodeproject.org/files/ENCFF408TSJ/@@download/ENCFF408TSJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF100PYI bigWig signal p-value ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF874RFY, ENCFF956XFI 637434812 ENCODE Processing Pipeline fae7cd51b22344ddbd6d04f61f946a7f https://www.encodeproject.org/files/ENCFF100PYI/@@download/ENCFF100PYI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF754VES bigWig signal p-value ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF686DEV, ENCFF837CRH 883846481 ENCODE Processing Pipeline 8458f9abc9937571b0c9cb56983fb3c7 https://www.encodeproject.org/files/ENCFF754VES/@@download/ENCFF754VES.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF496DIA bigWig signal p-value ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF686DEV, ENCFF837CRH, ENCFF874RFY, ENCFF956XFI 1551191817 ENCODE Processing Pipeline 4bf113f7bd6dc433cbf2fd884d5280a7 https://www.encodeproject.org/files/ENCFF496DIA/@@download/ENCFF496DIA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF856AYX bigWig fold change over control ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF874RFY, ENCFF956XFI 906153228 ENCODE Processing Pipeline c045a98c1f7a29df311494bed6e72378 https://www.encodeproject.org/files/ENCFF856AYX/@@download/ENCFF856AYX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF990OUR bigWig fold change over control ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF686DEV, ENCFF837CRH 937811945 ENCODE Processing Pipeline da171e6a9ffbafb9c6204327240a7de0 https://www.encodeproject.org/files/ENCFF990OUR/@@download/ENCFF990OUR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF106EPT bed narrowPeak replicated peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF108QXY, ENCFF533QUG, ENCFF665LFX 2442495 ENCODE Processing Pipeline 15c03fdd20cc0b5e94a67a515dddd232 https://www.encodeproject.org/files/ENCFF106EPT/@@download/ENCFF106EPT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF654YXS bigWig fold change over control ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF686DEV, ENCFF837CRH, ENCFF874RFY, ENCFF956XFI 1635531361 ENCODE Processing Pipeline 6504dea6248c7fb73b3cf62b6993187b https://www.encodeproject.org/files/ENCFF654YXS/@@download/ENCFF654YXS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF093SUW bigBed narrowPeak replicated peaks ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF106EPT 4166425 ENCODE Processing Pipeline 75ef9d4201869b77990839402388e2ae https://www.encodeproject.org/files/ENCFF093SUW/@@download/ENCFF093SUW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF001ZUT fastq reads ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 698136194 Bing Ren, UCSD 20cfb93ec5ecaaa958b9c1d5041221f5 SRA:SRR3652455 https://www.encodeproject.org/files/ENCFF001ZUT/@@download/ENCFF001ZUT.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF001ZUU fastq reads ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 683514841 Bing Ren, UCSD 643f59605db97d367f6b211999c0aa0b SRA:SRR3652454 https://www.encodeproject.org/files/ENCFF001ZUU/@@download/ENCFF001ZUU.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF118MPZ bam unfiltered alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUT, ENCFF806TVZ 917642444 ENCODE Processing Pipeline 9733162e0736bc0e0da99c47ecbb94a8 https://www.encodeproject.org/files/ENCFF118MPZ/@@download/ENCFF118MPZ.bam mm10-minimal archived low read length, low read depth ENCFF526SBC bam unfiltered alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUU, ENCFF806TVZ 893476580 ENCODE Processing Pipeline 5c0529e2eb2a4d9f60865feca37f6a5d https://www.encodeproject.org/files/ENCFF526SBC/@@download/ENCFF526SBC.bam mm10-minimal archived low read length, low read depth ENCFF841RBB bam alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUU, ENCFF806TVZ 562336463 ENCODE Processing Pipeline 9c14c6bf7ee9aa4b84bde66da7f93abe https://www.encodeproject.org/files/ENCFF841RBB/@@download/ENCFF841RBB.bam mm10-minimal archived low read length, low read depth ENCFF807GND bam alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUT, ENCFF806TVZ 582271531 ENCODE Processing Pipeline 9b774f5e28ea2d30dd054facc2b04deb https://www.encodeproject.org/files/ENCFF807GND/@@download/ENCFF807GND.bam mm10-minimal archived low read length, low read depth ENCFF681ZOI bam unfiltered alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUT, ENCFF018NEO 919000901 ENCODE Processing Pipeline 2102afc02e6f58d62817cc8d30543f39 https://www.encodeproject.org/files/ENCFF681ZOI/@@download/ENCFF681ZOI.bam mm10 released low read length, low read depth ENCFF010EXO bam alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUT, ENCFF018NEO 582067980 ENCODE Processing Pipeline 052c0fc878ce9af46a372270fbe3fd9d https://www.encodeproject.org/files/ENCFF010EXO/@@download/ENCFF010EXO.bam mm10 released low read length, low read depth ENCFF804FRH bam alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUU, ENCFF018NEO 562130177 ENCODE Processing Pipeline 9e096248db434185938d303c4f81b11c https://www.encodeproject.org/files/ENCFF804FRH/@@download/ENCFF804FRH.bam mm10 released low read length, low read depth ENCFF616JRC bam unfiltered alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUU, ENCFF018NEO 894784172 ENCODE Processing Pipeline f478e819a9d0af51890993f6e88d8f2d https://www.encodeproject.org/files/ENCFF616JRC/@@download/ENCFF616JRC.bam mm10 released low read length, low read depth ENCFF002AHB fastq reads ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1394094132 Bing Ren, UCSD 47dd709d50d8337ff8e5a5086e01c2d9 SRA:SRR3653033 https://www.encodeproject.org/files/ENCFF002AHB/@@download/ENCFF002AHB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQU/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AHE fastq reads ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1103087363 Bing Ren, UCSD 2b3e441105a17b3ea07cfb1012127907 SRA:SRR3653031 https://www.encodeproject.org/files/ENCFF002AHE/@@download/ENCFF002AHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQS/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF800XWY bam alignments ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHB, ENCFF806TVZ 1082307464 ENCODE Processing Pipeline 79730b98e57de81efbadbb103ee070d7 https://www.encodeproject.org/files/ENCFF800XWY/@@download/ENCFF800XWY.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF498BDE fastq reads ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 395398372 Bing Ren, UCSD aec0820e0ff513de0c546f61fd9ea3be SRA:SRR3653032 https://www.encodeproject.org/files/ENCFF498BDE/@@download/ENCFF498BDE.fastq.gz Illumina HiSeq 2500 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read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF936GSE bed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF800XWY 1116391 ENCODE Processing Pipeline 2cc8bd244fdb086875ce1fb7b98e3626 https://www.encodeproject.org/files/ENCFF936GSE/@@download/ENCFF936GSE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF965BDE bed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069TZF, ENCFF720UVE, ENCFF800XWY, ENCFF977HMC 1495243 ENCODE Processing Pipeline a990313b2992b82165edbee413700cdb https://www.encodeproject.org/files/ENCFF965BDE/@@download/ENCFF965BDE.bed.gz mm10-minimal archived low read length, 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technical replicates insufficient read depth, control insufficient read depth ENCFF694ZCR bed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF069TZF, ENCFF977HMC 1044762 ENCODE Processing Pipeline b6843a8d928163e5533c1cb5b28f49bc https://www.encodeproject.org/files/ENCFF694ZCR/@@download/ENCFF694ZCR.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF249WNK bigBed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF694ZCR 2271102 ENCODE Processing Pipeline 9db054d986a39ce50562f5e8bdbd5c92 https://www.encodeproject.org/files/ENCFF249WNK/@@download/ENCFF249WNK.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF821TWT bigBed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF965BDE 3034935 ENCODE Processing Pipeline 39aeb3fc0d5f3ae37f8a110854410f87 https://www.encodeproject.org/files/ENCFF821TWT/@@download/ENCFF821TWT.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF131DLC bigWig signal p-value ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069TZF, ENCFF720UVE, ENCFF800XWY, ENCFF977HMC 889517818 ENCODE Processing Pipeline a33619187dddbb31cc072ac5bc2006a9 https://www.encodeproject.org/files/ENCFF131DLC/@@download/ENCFF131DLC.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF148CBQ bigWig fold change over control ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF069TZF, ENCFF977HMC 532478340 ENCODE Processing Pipeline 222b111a7e827a79ada3034a9185c3b1 https://www.encodeproject.org/files/ENCFF148CBQ/@@download/ENCFF148CBQ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF478OFH bigWig fold change over control ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF800XWY 469422189 ENCODE Processing Pipeline a42768459f808bda8aa23137e3b391ea https://www.encodeproject.org/files/ENCFF478OFH/@@download/ENCFF478OFH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF808MWP bed narrowPeak replicated peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF694ZCR, ENCFF936GSE, ENCFF965BDE 618685 ENCODE Processing Pipeline cb827dd6597f091e6fa166a6f90a43db https://www.encodeproject.org/files/ENCFF808MWP/@@download/ENCFF808MWP.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF647OEJ bigWig fold change over control ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069TZF, ENCFF720UVE, ENCFF800XWY, ENCFF977HMC 993334328 ENCODE Processing Pipeline e22c25f9982eb3049023fb16ec11eb73 https://www.encodeproject.org/files/ENCFF647OEJ/@@download/ENCFF647OEJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF341QSI bigBed narrowPeak replicated peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF808MWP 1346533 ENCODE Processing Pipeline f3778c1d299f36697419a32e9d1d4b6d https://www.encodeproject.org/files/ENCFF341QSI/@@download/ENCFF341QSI.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF302CPS bam unfiltered alignments ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHB, ENCFF018NEO 1529813551 ENCODE Processing Pipeline 69a64f1eb619c598a716f599e0f32da6 https://www.encodeproject.org/files/ENCFF302CPS/@@download/ENCFF302CPS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF668TGT bam unfiltered alignments ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHE, ENCFF018NEO, ENCFF498BDE 1625564391 ENCODE Processing Pipeline b833025cef4ca49852e46b18efe4ad8a https://www.encodeproject.org/files/ENCFF668TGT/@@download/ENCFF668TGT.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF921ADB bam alignments ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHB, ENCFF018NEO 1082061174 ENCODE Processing Pipeline 1a00bad646786f03477e9f5fb8953a99 https://www.encodeproject.org/files/ENCFF921ADB/@@download/ENCFF921ADB.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF906MEI bam alignments ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHE, ENCFF018NEO, ENCFF498BDE 1145717924 ENCODE Processing Pipeline b5b5e52731e8046ebf0ac4e100d708f4 https://www.encodeproject.org/files/ENCFF906MEI/@@download/ENCFF906MEI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF527DRX bed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF322DCQ, ENCFF906MEI 1025865 ENCODE Processing Pipeline 7253c3edecd04dcd34319b928ecd916c https://www.encodeproject.org/files/ENCFF527DRX/@@download/ENCFF527DRX.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF450KZN bed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF921ADB, ENCFF979XVT 1071602 ENCODE Processing Pipeline 643b09f25b8f661c49e62c27e23e3960 https://www.encodeproject.org/files/ENCFF450KZN/@@download/ENCFF450KZN.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF810SHV bed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF322DCQ, ENCFF906MEI, ENCFF921ADB, ENCFF979XVT 1431977 ENCODE Processing Pipeline 734e1c09559a5370351b7410dbd33486 https://www.encodeproject.org/files/ENCFF810SHV/@@download/ENCFF810SHV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF144ULW bigBed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF527DRX 2259343 ENCODE Processing Pipeline 3b51c7f177697b156bbb51c27deb374f https://www.encodeproject.org/files/ENCFF144ULW/@@download/ENCFF144ULW.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF060TOA bigBed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF450KZN 2272207 ENCODE Processing Pipeline 675d434af2f8674ad4331ef9d23a27bc https://www.encodeproject.org/files/ENCFF060TOA/@@download/ENCFF060TOA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF890XQG bigBed narrowPeak peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF810SHV 3763173 ENCODE Processing Pipeline cf0079612d8a008199c10707bced5d5e https://www.encodeproject.org/files/ENCFF890XQG/@@download/ENCFF890XQG.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF412PBI bigWig signal p-value ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF322DCQ, ENCFF906MEI 512652070 ENCODE Processing Pipeline 5a2ee5a69fe39e8a321d22eae88497d5 https://www.encodeproject.org/files/ENCFF412PBI/@@download/ENCFF412PBI.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF525TSV bigWig signal p-value ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF921ADB, ENCFF979XVT 414873993 ENCODE Processing Pipeline 2537dd8e345da5e785832a7650b51ac2 https://www.encodeproject.org/files/ENCFF525TSV/@@download/ENCFF525TSV.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF005WQN bigWig signal p-value ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF322DCQ, ENCFF906MEI, ENCFF921ADB, ENCFF979XVT 753046223 ENCODE Processing Pipeline c3890a361f7829bb9b8013d201a5634d https://www.encodeproject.org/files/ENCFF005WQN/@@download/ENCFF005WQN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF829ZLH bigWig fold change over control ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF322DCQ, ENCFF906MEI 535696495 ENCODE Processing Pipeline 98d5c9e42df8abcfb5faf93b3217b9eb https://www.encodeproject.org/files/ENCFF829ZLH/@@download/ENCFF829ZLH.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF831UYX bigWig fold change over control ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF921ADB, ENCFF979XVT 466627412 ENCODE Processing Pipeline d6d6462fd92d805b83b5b6a79f45408b https://www.encodeproject.org/files/ENCFF831UYX/@@download/ENCFF831UYX.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF845OXU bigWig fold change over control ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF322DCQ, ENCFF906MEI, ENCFF921ADB, ENCFF979XVT 1030862285 ENCODE Processing Pipeline b74aa7ff89a199e333feec3306ef4934 https://www.encodeproject.org/files/ENCFF845OXU/@@download/ENCFF845OXU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF247CGE bed narrowPeak replicated peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF450KZN, ENCFF527DRX, ENCFF810SHV 598712 ENCODE Processing Pipeline 6017f1d916883d6817e5aecdfc00d50a https://www.encodeproject.org/files/ENCFF247CGE/@@download/ENCFF247CGE.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF697VMW bigBed narrowPeak replicated peaks ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF247CGE 1286880 ENCODE Processing Pipeline 125fba92dfbf9e003787214a0ad2f98e https://www.encodeproject.org/files/ENCFF697VMW/@@download/ENCFF697VMW.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF853YXL fastq reads ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 3460168549 Bing Ren, UCSD aa0c6802ff300c5f0adca8f0467a6ff5 SRA:SRR3651396 https://www.encodeproject.org/files/ENCFF853YXL/@@download/ENCFF853YXL.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF257YNR fastq reads ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1833748522 Bing Ren, UCSD 4c95d965e02e671da65cb430dabac09b SRA:SRR3651397 https://www.encodeproject.org/files/ENCFF257YNR/@@download/ENCFF257YNR.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF331VLT fastq reads ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 271425273 Bing Ren, UCSD 4d92c66e68a99d7be0807b8341f0fb10 SRA:SRR3651398 https://www.encodeproject.org/files/ENCFF331VLT/@@download/ENCFF331VLT.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF113CLY bam alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF853YXL 2991225189 ENCODE Processing Pipeline 440a1ce08ee78f822e06e05a4c74588e https://www.encodeproject.org/files/ENCFF113CLY/@@download/ENCFF113CLY.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF229MEY bam alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF257YNR, ENCFF331VLT, ENCFF806TVZ 1995943094 ENCODE Processing Pipeline 5c5c30c64b26b33d2261853907647451 https://www.encodeproject.org/files/ENCFF229MEY/@@download/ENCFF229MEY.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF912OWZ bigBed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF225YSE 4909986 ENCODE Processing Pipeline eb4f39fa4d4cf82fb9eca73a6db4ffdb https://www.encodeproject.org/files/ENCFF912OWZ/@@download/ENCFF912OWZ.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF808LWI bed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF229MEY, ENCFF405EMM, ENCFF986JLW 2441163 ENCODE Processing Pipeline d86221aab1c5e337c256b710d40e1945 https://www.encodeproject.org/files/ENCFF808LWI/@@download/ENCFF808LWI.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF225YSE bed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF113CLY, ENCFF405EMM 2217692 ENCODE Processing Pipeline 9636856d33477833cd767b725391e3df https://www.encodeproject.org/files/ENCFF225YSE/@@download/ENCFF225YSE.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF759HRG bigBed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF808LWI 5539786 ENCODE Processing Pipeline 5373cb09113f95644ddc1ab25bdc24ee https://www.encodeproject.org/files/ENCFF759HRG/@@download/ENCFF759HRG.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF082KHQ bed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF113CLY, ENCFF229MEY, ENCFF405EMM, ENCFF986JLW 2455775 ENCODE Processing Pipeline 489d617102536aabe9108a34b56e7f8d https://www.encodeproject.org/files/ENCFF082KHQ/@@download/ENCFF082KHQ.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF029PMX bigBed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF082KHQ 5423499 ENCODE Processing Pipeline 68d3fb664339a14609c53b84bdcec17d https://www.encodeproject.org/files/ENCFF029PMX/@@download/ENCFF029PMX.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF039XYI bigWig signal p-value ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF229MEY, ENCFF405EMM, ENCFF986JLW 821398845 ENCODE Processing Pipeline c2acff12ab34306492b0f76bf19bc677 https://www.encodeproject.org/files/ENCFF039XYI/@@download/ENCFF039XYI.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF676GQP bigWig signal p-value ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF113CLY, ENCFF405EMM 916278044 ENCODE Processing Pipeline 8a7e7fb9bc0b2597adc8b45a6760976a https://www.encodeproject.org/files/ENCFF676GQP/@@download/ENCFF676GQP.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF828KAB bigWig signal p-value ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF113CLY, ENCFF229MEY, ENCFF405EMM, ENCFF986JLW 1541855938 ENCODE Processing Pipeline 0d15e8e730ab46cecd6383c0b1c92e3c https://www.encodeproject.org/files/ENCFF828KAB/@@download/ENCFF828KAB.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF533BKO bigWig fold change over control ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF229MEY, ENCFF405EMM, ENCFF986JLW 1049588343 ENCODE Processing Pipeline c1abc89ba533b45e55dcdcf73ead10f2 https://www.encodeproject.org/files/ENCFF533BKO/@@download/ENCFF533BKO.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF726GAT bigWig fold change over control ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF113CLY, ENCFF405EMM 1152306327 ENCODE Processing Pipeline 2bc7038c7606ecd466316803badac9f1 https://www.encodeproject.org/files/ENCFF726GAT/@@download/ENCFF726GAT.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF699ZWD bigWig fold change over control ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF113CLY, ENCFF229MEY, ENCFF405EMM, ENCFF986JLW 1721129142 ENCODE Processing Pipeline dd859c5f8f78d7a02cf021a4e0f1f4b8 https://www.encodeproject.org/files/ENCFF699ZWD/@@download/ENCFF699ZWD.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF762INU bed narrowPeak replicated peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF082KHQ, ENCFF225YSE, ENCFF808LWI 2167774 ENCODE Processing Pipeline 075434380cbf574fb5a2533c3a7ad2c8 https://www.encodeproject.org/files/ENCFF762INU/@@download/ENCFF762INU.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF558QYH bigBed narrowPeak replicated peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF762INU 3846357 ENCODE Processing Pipeline 46310c361ce292874283357dd76ef07c https://www.encodeproject.org/files/ENCFF558QYH/@@download/ENCFF558QYH.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF775QES bam unfiltered alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF257YNR, ENCFF331VLT 2854355327 ENCODE Processing Pipeline aa543571ec30b284bbad7c3b06912506 https://www.encodeproject.org/files/ENCFF775QES/@@download/ENCFF775QES.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF347IGZ bam unfiltered alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF853YXL 4525741810 ENCODE Processing Pipeline 7f275f0d883ceee4412cc09e46f84f92 https://www.encodeproject.org/files/ENCFF347IGZ/@@download/ENCFF347IGZ.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF549CKG bam alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF257YNR, ENCFF331VLT 1995409984 ENCODE Processing Pipeline 4c8ef8853f5769cee0e9e90e93cd8618 https://www.encodeproject.org/files/ENCFF549CKG/@@download/ENCFF549CKG.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF517LTD bam alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF853YXL 2990636152 ENCODE Processing Pipeline 09d9f048e0f0fd3c728e6dd47e743221 https://www.encodeproject.org/files/ENCFF517LTD/@@download/ENCFF517LTD.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF760JUC bed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF549CKG, ENCFF614XRG, ENCFF970FNZ 2445829 ENCODE Processing Pipeline bf5e6509e7929c0de29584572b9dda50 https://www.encodeproject.org/files/ENCFF760JUC/@@download/ENCFF760JUC.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF558KFK bed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF517LTD, ENCFF614XRG 2205126 ENCODE Processing Pipeline 0b337643a5aa3f22666f31c611e19af6 https://www.encodeproject.org/files/ENCFF558KFK/@@download/ENCFF558KFK.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF021EQR bed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF517LTD, ENCFF549CKG, ENCFF614XRG, ENCFF970FNZ 2451966 ENCODE Processing Pipeline 5a6a901e2b17e97b6a58aa1bcbf4a82a https://www.encodeproject.org/files/ENCFF021EQR/@@download/ENCFF021EQR.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF826JHM bigBed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF760JUC 5556370 ENCODE Processing Pipeline 6f96796e8e18775dea3edf9057a6d1a5 https://www.encodeproject.org/files/ENCFF826JHM/@@download/ENCFF826JHM.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF895GPK bigBed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF558KFK 4900205 ENCODE Processing Pipeline 020d30b910943c191434eff49fb30f8f https://www.encodeproject.org/files/ENCFF895GPK/@@download/ENCFF895GPK.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF849BZY bigBed narrowPeak peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF021EQR 5418180 ENCODE Processing Pipeline cde7350c3fd51c8401b0e4c39320bc2c https://www.encodeproject.org/files/ENCFF849BZY/@@download/ENCFF849BZY.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF274RUR bigWig signal p-value ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF549CKG, ENCFF614XRG, ENCFF970FNZ 878386069 ENCODE Processing Pipeline ab49559db8595e8e6c67ec5b81433c83 https://www.encodeproject.org/files/ENCFF274RUR/@@download/ENCFF274RUR.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF943BSC bigWig signal p-value ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF517LTD, ENCFF614XRG 907454894 ENCODE Processing Pipeline a2068816cd2702c39df4ec8e0817872c https://www.encodeproject.org/files/ENCFF943BSC/@@download/ENCFF943BSC.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF853QUV bigWig signal p-value ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF517LTD, ENCFF549CKG, ENCFF614XRG, ENCFF970FNZ 1542020976 ENCODE Processing Pipeline 59de3f342d24638abb016a241fdeb3cb https://www.encodeproject.org/files/ENCFF853QUV/@@download/ENCFF853QUV.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF665QDL bigWig fold change over control ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF549CKG, ENCFF614XRG, ENCFF970FNZ 1067256152 ENCODE Processing Pipeline b3e7b5e1c521b00d01f4a619ebb1c7c2 https://www.encodeproject.org/files/ENCFF665QDL/@@download/ENCFF665QDL.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF632VTH bigWig fold change over control ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF517LTD, ENCFF614XRG 1149200471 ENCODE Processing Pipeline 32339b66fc7bc683687548621590f3cf https://www.encodeproject.org/files/ENCFF632VTH/@@download/ENCFF632VTH.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF846FSQ bigWig fold change over control ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF517LTD, ENCFF549CKG, ENCFF614XRG, ENCFF970FNZ 1722699366 ENCODE Processing Pipeline a517a46d917fef7323e870547ef26614 https://www.encodeproject.org/files/ENCFF846FSQ/@@download/ENCFF846FSQ.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF122LDI bed narrowPeak replicated peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF021EQR, ENCFF558KFK, ENCFF760JUC 2212079 ENCODE Processing Pipeline bb8ad95cc3ff1336a8cb1767397d16ca https://www.encodeproject.org/files/ENCFF122LDI/@@download/ENCFF122LDI.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF325NSW bigBed narrowPeak replicated peaks ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF122LDI 3925502 ENCODE Processing Pipeline a31eefc2eb8310d019aade1af7303bce https://www.encodeproject.org/files/ENCFF325NSW/@@download/ENCFF325NSW.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF002BXL fastq reads ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 773415140 Bing Ren, UCSD 3fdebc1fbde7e8e0ef32a80cc9d24662 SRA:SRR3652508 https://www.encodeproject.org/files/ENCFF002BXL/@@download/ENCFF002BXL.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF002BXM fastq reads ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 834376315 Bing Ren, UCSD e30ab740154e7b0ee4cf990249531eb2 SRA:SRR3652509 https://www.encodeproject.org/files/ENCFF002BXM/@@download/ENCFF002BXM.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF901LSF bam unfiltered alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXM, ENCFF806TVZ 1070229261 ENCODE Processing Pipeline ba565f2fdaad8e008b9c0cad5bcd04de https://www.encodeproject.org/files/ENCFF901LSF/@@download/ENCFF901LSF.bam mm10-minimal archived low read length, low read depth ENCFF894YTC bam unfiltered alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXL, ENCFF806TVZ 990628206 ENCODE Processing Pipeline 94a0a5d2f7b5fff48c9f24c46a29bf3f https://www.encodeproject.org/files/ENCFF894YTC/@@download/ENCFF894YTC.bam mm10-minimal archived low read length, low read depth ENCFF395ALO bam alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXM, ENCFF806TVZ 629280110 ENCODE Processing Pipeline da571bc25403102ec627f7259e6de5a9 https://www.encodeproject.org/files/ENCFF395ALO/@@download/ENCFF395ALO.bam mm10-minimal archived low read length, low read depth ENCFF956BKJ bam alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXL, ENCFF806TVZ 582712853 ENCODE Processing Pipeline 4b31d02343ab9b2579ee351394fb4f88 https://www.encodeproject.org/files/ENCFF956BKJ/@@download/ENCFF956BKJ.bam mm10-minimal archived low read length, low read depth ENCFF219UHY bam unfiltered alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXM, ENCFF018NEO 1071902014 ENCODE Processing Pipeline 0a37fc1e2c8bd4efa6e5fc04425a13c5 https://www.encodeproject.org/files/ENCFF219UHY/@@download/ENCFF219UHY.bam mm10 released low read length, low read depth ENCFF725CNO bam unfiltered alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXL, ENCFF018NEO 992134621 ENCODE Processing Pipeline b6ca32487ab6bc83117d31da270682fa https://www.encodeproject.org/files/ENCFF725CNO/@@download/ENCFF725CNO.bam mm10 released low read length, low read depth ENCFF052SGY bam alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXL, ENCFF018NEO 582473425 ENCODE Processing Pipeline 14d1b48688a686f97715dea32a03f968 https://www.encodeproject.org/files/ENCFF052SGY/@@download/ENCFF052SGY.bam mm10 released low read length, low read depth ENCFF488PXJ bam alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXM, ENCFF018NEO 629047829 ENCODE Processing Pipeline cf2bdb9bf50dfb3deeaa4e7a5e7729eb https://www.encodeproject.org/files/ENCFF488PXJ/@@download/ENCFF488PXJ.bam mm10 released low read length, low read depth ENCFF319CNO fastq reads ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2118888476 Bing Ren, UCSD 127a26e31e3e0f6bd060fd24331d2d63 SRA:SRR3651623 https://www.encodeproject.org/files/ENCFF319CNO/@@download/ENCFF319CNO.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF525DSW fastq reads ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 389874405 Bing Ren, UCSD cce8a1837c4bcc247aea59c932c6e3e0 SRA:SRR3651624 https://www.encodeproject.org/files/ENCFF525DSW/@@download/ENCFF525DSW.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF371VHS fastq reads ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 3212844198 Bing Ren, UCSD 92be3a50fededac104ec1b9a0bf51605 SRA:SRR3651625 https://www.encodeproject.org/files/ENCFF371VHS/@@download/ENCFF371VHS.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF123TFV bam alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF319CNO, ENCFF525DSW, ENCFF806TVZ 1994104162 ENCODE Processing Pipeline 4563e443e67ca0ff957ecd27ae457299 https://www.encodeproject.org/files/ENCFF123TFV/@@download/ENCFF123TFV.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF808XXF bam alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF371VHS, ENCFF806TVZ 2442585959 ENCODE Processing Pipeline 7a14567b8dc830a3e16b914a9382c2e0 https://www.encodeproject.org/files/ENCFF808XXF/@@download/ENCFF808XXF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF540HHX bigBed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF109AEQ 6066118 ENCODE Processing Pipeline 86686b277a6e2c2771f059139813aebc https://www.encodeproject.org/files/ENCFF540HHX/@@download/ENCFF540HHX.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF673WKZ bed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF123TFV 2638107 ENCODE Processing Pipeline 0766395773bd6a2bdb682a9ef0a3c881 https://www.encodeproject.org/files/ENCFF673WKZ/@@download/ENCFF673WKZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF989FWU bigBed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF673WKZ 5703675 ENCODE Processing Pipeline ac76384b9d65331cd00bc05ba9cf905c https://www.encodeproject.org/files/ENCFF989FWU/@@download/ENCFF989FWU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF036BAL bed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF808XXF 2864357 ENCODE Processing Pipeline b24b4f9b6d100f5abcd6bd9035e6f098 https://www.encodeproject.org/files/ENCFF036BAL/@@download/ENCFF036BAL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF493GYQ bigBed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF036BAL 6042143 ENCODE Processing Pipeline a6ac40cac68aefc39cb4c447acce2bfd https://www.encodeproject.org/files/ENCFF493GYQ/@@download/ENCFF493GYQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF184JLL bigWig signal p-value ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF123TFV 733485218 ENCODE Processing Pipeline 38be29e59b0a96465e9f1e20e12c184d https://www.encodeproject.org/files/ENCFF184JLL/@@download/ENCFF184JLL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF109AEQ bed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF123TFV, ENCFF808XXF 2862209 ENCODE Processing Pipeline 719318a0f63b503e58da6947673da755 https://www.encodeproject.org/files/ENCFF109AEQ/@@download/ENCFF109AEQ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF701LCN bigWig signal p-value ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF808XXF 1178074764 ENCODE Processing Pipeline f44d3e57287ca1da6306598c728692f3 https://www.encodeproject.org/files/ENCFF701LCN/@@download/ENCFF701LCN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF131GAT bigWig signal p-value ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF123TFV, ENCFF808XXF 1517286155 ENCODE Processing Pipeline 146a93ace22082dd039141b9961ced58 https://www.encodeproject.org/files/ENCFF131GAT/@@download/ENCFF131GAT.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF366SCD bigWig fold change over control ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF123TFV 799300067 ENCODE Processing Pipeline a20099d14cfba76be3c8f6b772f84256 https://www.encodeproject.org/files/ENCFF366SCD/@@download/ENCFF366SCD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF219NRL bigWig fold change over control ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF808XXF 1145352558 ENCODE Processing Pipeline fc2df803b86eb61109e42ac4b487792b https://www.encodeproject.org/files/ENCFF219NRL/@@download/ENCFF219NRL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF297UZH bigWig fold change over control ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF123TFV, ENCFF808XXF 1571924703 ENCODE Processing Pipeline c6c2de736ff75713bcf85a5ae817d455 https://www.encodeproject.org/files/ENCFF297UZH/@@download/ENCFF297UZH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF479GNM bed narrowPeak replicated peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF036BAL, ENCFF109AEQ, ENCFF673WKZ 2460117 ENCODE Processing Pipeline 851302357b3866ce31620c09672783d1 https://www.encodeproject.org/files/ENCFF479GNM/@@download/ENCFF479GNM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF964LTA bigBed narrowPeak replicated peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF479GNM 4144683 ENCODE Processing Pipeline df97fc934777a165273017eaa394397c https://www.encodeproject.org/files/ENCFF964LTA/@@download/ENCFF964LTA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF270QZV bam unfiltered alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF319CNO, ENCFF525DSW 3219248503 ENCODE Processing Pipeline 646447a16a1b7b23d1472385e83302c3 https://www.encodeproject.org/files/ENCFF270QZV/@@download/ENCFF270QZV.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF700FUG bam unfiltered alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF371VHS 4019621698 ENCODE Processing Pipeline 9a1ac0b3d3907487d1d8eac40201fe7a https://www.encodeproject.org/files/ENCFF700FUG/@@download/ENCFF700FUG.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF809PGZ bam alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF319CNO, ENCFF525DSW 1993658651 ENCODE Processing Pipeline b16c8c533778f3b83e25792f07f36a0c https://www.encodeproject.org/files/ENCFF809PGZ/@@download/ENCFF809PGZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF815BRW bam alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF371VHS 2442104883 ENCODE Processing Pipeline f759dce47f01d2838eba7abc969910fd https://www.encodeproject.org/files/ENCFF815BRW/@@download/ENCFF815BRW.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF182VRM bed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF570IJH, ENCFF809PGZ, ENCFF815BRW 2863205 ENCODE Processing Pipeline a09a649904c69bdd0cb2722a2b51ed6c https://www.encodeproject.org/files/ENCFF182VRM/@@download/ENCFF182VRM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF044CRA bed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF570IJH, ENCFF809PGZ 2881506 ENCODE Processing Pipeline 341afb0174366d61d8ea94c468d4f2d5 https://www.encodeproject.org/files/ENCFF044CRA/@@download/ENCFF044CRA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF970QNA bed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF815BRW 2883270 ENCODE Processing Pipeline 6ca187b6e91b693ad1b98f960ca08f67 https://www.encodeproject.org/files/ENCFF970QNA/@@download/ENCFF970QNA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF804FEG bigBed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF044CRA 6207202 ENCODE Processing Pipeline 781f50a74292bafe0d4085126110009b https://www.encodeproject.org/files/ENCFF804FEG/@@download/ENCFF804FEG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF579LJE bigBed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF970QNA 6086505 ENCODE Processing Pipeline 10b75923ae1f5fd5801488cf4197e0d7 https://www.encodeproject.org/files/ENCFF579LJE/@@download/ENCFF579LJE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF534ZMT bigBed narrowPeak peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF182VRM 6072366 ENCODE Processing Pipeline 33275da1d024f7f150e68b0274ab1cf1 https://www.encodeproject.org/files/ENCFF534ZMT/@@download/ENCFF534ZMT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF089PNZ bigWig signal p-value ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF570IJH, ENCFF809PGZ 562770164 ENCODE Processing Pipeline 1c8014050f87e65065ce8b956236ca22 https://www.encodeproject.org/files/ENCFF089PNZ/@@download/ENCFF089PNZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF385HHV bigWig signal p-value ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF815BRW 854314722 ENCODE Processing Pipeline 59ebcaf595bd122124ca6a4c809d28fe https://www.encodeproject.org/files/ENCFF385HHV/@@download/ENCFF385HHV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF090GDM bigWig signal p-value ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF570IJH, ENCFF809PGZ, ENCFF815BRW 1518077576 ENCODE Processing Pipeline 81ed70e002e905b804c41f2c79678e63 https://www.encodeproject.org/files/ENCFF090GDM/@@download/ENCFF090GDM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF951OGO bigWig fold change over control ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF570IJH, ENCFF809PGZ 791049469 ENCODE Processing Pipeline 0292cc798e51a5697f15e4448b34894d https://www.encodeproject.org/files/ENCFF951OGO/@@download/ENCFF951OGO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF147TKL bigWig fold change over control ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF815BRW 1146525808 ENCODE Processing Pipeline b5269fcee8cb8d9cee14fa47876fe834 https://www.encodeproject.org/files/ENCFF147TKL/@@download/ENCFF147TKL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF841DUP bigWig fold change over control ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF570IJH, ENCFF809PGZ, ENCFF815BRW 1571776072 ENCODE Processing Pipeline 4a58bccdf67cfead6455a7f104bb069e https://www.encodeproject.org/files/ENCFF841DUP/@@download/ENCFF841DUP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF426CAN bed narrowPeak replicated peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF044CRA, ENCFF182VRM, ENCFF970QNA 2455780 ENCODE Processing Pipeline 37073eb98cbf55b95522b3617af6341c https://www.encodeproject.org/files/ENCFF426CAN/@@download/ENCFF426CAN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF094CGM bigBed narrowPeak replicated peaks ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF426CAN 4136345 ENCODE Processing Pipeline 4d2e1ab753d115a165f4bd94c0cc950f https://www.encodeproject.org/files/ENCFF094CGM/@@download/ENCFF094CGM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF393EAJ fastq reads ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2485416626 Bing Ren, UCSD 8004e7d4c778b83f60c5215b15ee6137 SRA:SRR3651324 https://www.encodeproject.org/files/ENCFF393EAJ/@@download/ENCFF393EAJ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF545UQA fastq reads ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2113820910 Bing Ren, UCSD 34df064202bd4c5b1dbddcf149de8a95 SRA:SRR3651326 https://www.encodeproject.org/files/ENCFF545UQA/@@download/ENCFF545UQA.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF371GCA bam alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF393EAJ, ENCFF806TVZ 2148029176 ENCODE Processing Pipeline 48f8fef962eab4ff59a2d2b7fb1ec9be https://www.encodeproject.org/files/ENCFF371GCA/@@download/ENCFF371GCA.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF627MYB bam alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF545UQA, ENCFF806TVZ 1853469538 ENCODE Processing Pipeline e2926973cb46ead4599123e1c04cdcf6 https://www.encodeproject.org/files/ENCFF627MYB/@@download/ENCFF627MYB.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF731RTD fastq reads ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 270130818 Bing Ren, UCSD 76afd909f6f34188b1fd80a2581b3c0b SRA:SRR3651325 https://www.encodeproject.org/files/ENCFF731RTD/@@download/ENCFF731RTD.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF972QSB fastq reads ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 370297383 Bing Ren, UCSD c3ccbeeb47b89a849ef1df68a7262f38 SRA:SRR3651327 https://www.encodeproject.org/files/ENCFF972QSB/@@download/ENCFF972QSB.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF490LBM fastq reads ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 3 50 single-ended 190584853 Bing Ren, UCSD a24e00d64117c0618ae719bd3bcf2b8d SRA:SRR3651328 https://www.encodeproject.org/files/ENCFF490LBM/@@download/ENCFF490LBM.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF060JKD bam alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF393EAJ, ENCFF731RTD 2445503245 ENCODE Processing Pipeline 065ecaf8cf4f4eb0a89f06267772df30 https://www.encodeproject.org/files/ENCFF060JKD/@@download/ENCFF060JKD.bam mm10 released sequencing runs labeled as technical replicates ENCFF884PDZ bam alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF490LBM, ENCFF545UQA, ENCFF972QSB 2468239767 ENCODE Processing Pipeline 37b900d675dca123aa8a5c692a2daba4 https://www.encodeproject.org/files/ENCFF884PDZ/@@download/ENCFF884PDZ.bam mm10 released sequencing runs labeled as technical replicates ENCFF771ITO bam unfiltered alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF393EAJ, ENCFF731RTD 3472726408 ENCODE Processing Pipeline 62ff9631d1940c9f5d933985de80ed99 https://www.encodeproject.org/files/ENCFF771ITO/@@download/ENCFF771ITO.bam mm10 released sequencing runs labeled as technical replicates ENCFF440RKT bam unfiltered alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF490LBM, ENCFF545UQA, ENCFF972QSB 3471893667 ENCODE Processing Pipeline b94d41d975a4e18aa44bc91ec9d0d649 https://www.encodeproject.org/files/ENCFF440RKT/@@download/ENCFF440RKT.bam mm10 released sequencing runs labeled as technical replicates ENCFF331QQL fastq reads ENCSR999LAC ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 1 50 single-ended 1182214076 Richard Myers, HAIB ac2500fc250d596b86c36fd79e4bad7d SRA:SRR5112378 https://www.encodeproject.org/files/ENCFF331QQL/@@download/ENCFF331QQL.fastq.gz Illumina HiSeq 2000 released low read depth ENCFF846YEH bam unfiltered alignments ENCSR999LAC ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 ENCFF018NEO, ENCFF331QQL 1325128080 ENCODE Processing Pipeline fdb55c4db047aeeec386f6b2db0c0e72 https://www.encodeproject.org/files/ENCFF846YEH/@@download/ENCFF846YEH.bam mm10 released low read depth ENCFF847EJM bam alignments ENCSR999LAC ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 50 ENCFF018NEO, ENCFF331QQL 970731188 ENCODE Processing Pipeline cf27ca4a3a6a2906818293ba1f444012 https://www.encodeproject.org/files/ENCFF847EJM/@@download/ENCFF847EJM.bam mm10 released low read depth ENCFF002AQC fastq reads ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1041938712 Bing Ren, UCSD 851ff2d80733f42c68331369c3d0599c SRA:SRR3651365 https://www.encodeproject.org/files/ENCFF002AQC/@@download/ENCFF002AQC.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF002AQE fastq reads ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1404020507 Bing Ren, UCSD 7c69e7186f3faf9848e446c4710a03c8 SRA:SRR3651366 https://www.encodeproject.org/files/ENCFF002AQE/@@download/ENCFF002AQE.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF951XFI bam unfiltered alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQE, ENCFF806TVZ 1578150872 ENCODE Processing Pipeline b272d8339bbc97062a6f4be7b9a9c591 https://www.encodeproject.org/files/ENCFF951XFI/@@download/ENCFF951XFI.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF984NTS bam unfiltered alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQC, ENCFF806TVZ 1106391894 ENCODE Processing Pipeline 9fdb8565b9de81f68837ae34a9bc29d1 https://www.encodeproject.org/files/ENCFF984NTS/@@download/ENCFF984NTS.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF387UYW bam alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQE, ENCFF806TVZ 1133648653 ENCODE Processing Pipeline 6767b3685bccee973a2859a13ee92f5e https://www.encodeproject.org/files/ENCFF387UYW/@@download/ENCFF387UYW.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF999TAG bam alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQC, ENCFF806TVZ 618590383 ENCODE Processing Pipeline 489e8969bdf2e75e18c05c52d75a9de0 https://www.encodeproject.org/files/ENCFF999TAG/@@download/ENCFF999TAG.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF511BXF bam unfiltered alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQC, ENCFF018NEO 1107987030 ENCODE Processing Pipeline 62134faebea69546623a00d4cde5a4a5 https://www.encodeproject.org/files/ENCFF511BXF/@@download/ENCFF511BXF.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF446WFN bam alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQC, ENCFF018NEO 618400882 ENCODE Processing Pipeline e1d7f9fc033c42c84959dc0fc4041e2d https://www.encodeproject.org/files/ENCFF446WFN/@@download/ENCFF446WFN.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF032AWP bam alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQE, ENCFF018NEO 866618751 ENCODE Processing Pipeline c1de2a2326f1d73149e9a1bea430df59 https://www.encodeproject.org/files/ENCFF032AWP/@@download/ENCFF032AWP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF438RIP bam unfiltered alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQE, ENCFF018NEO 1293713278 ENCODE Processing Pipeline 371ede453c1260d0abec215dd18b951f https://www.encodeproject.org/files/ENCFF438RIP/@@download/ENCFF438RIP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF464DYI fastq reads ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 924778484 Richard Myers, HAIB 11c2a22b1dbdc7db05f4c2c7b993ffb4 SRA:SRR5111671 https://www.encodeproject.org/files/ENCFF464DYI/@@download/ENCFF464DYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF637HTW/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF310VOQ fastq reads ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 934347819 Richard Myers, HAIB 7f34d08dad0c3949dbb84ab77a7c94e8 SRA:SRR5111672 https://www.encodeproject.org/files/ENCFF310VOQ/@@download/ENCFF310VOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF637HTW/ released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF231XEH bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF310VOQ, ENCFF806TVZ 747118869 ENCODE Processing Pipeline 628105979ab056eb37deb82343fc7842 https://www.encodeproject.org/files/ENCFF231XEH/@@download/ENCFF231XEH.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF009SLP bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF464DYI, ENCFF806TVZ 776631933 ENCODE Processing Pipeline 996f40fdae42e330378968244606353e https://www.encodeproject.org/files/ENCFF009SLP/@@download/ENCFF009SLP.bam mm10-minimal archived control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF121FBT bam unfiltered alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 1010363083 ENCODE Processing Pipeline 218ea7ba6c9da442a0591cb36afd65f8 https://www.encodeproject.org/files/ENCFF121FBT/@@download/ENCFF121FBT.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF223FXW bam unfiltered alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 972622758 ENCODE Processing Pipeline 3a051a1881f98f672ca6854f78e9bf35 https://www.encodeproject.org/files/ENCFF223FXW/@@download/ENCFF223FXW.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF390ZQV bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 747012839 ENCODE Processing Pipeline 281880213c6a21380a29653b3ddb1c64 https://www.encodeproject.org/files/ENCFF390ZQV/@@download/ENCFF390ZQV.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF371TUB bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 776530302 ENCODE Processing Pipeline e448db6f7692c2f59352bfe6b409de7d https://www.encodeproject.org/files/ENCFF371TUB/@@download/ENCFF371TUB.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF246CLY bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 435464375 ENCODE Processing Pipeline 09f2cca20ede02726a5447a94de5f73b https://www.encodeproject.org/files/ENCFF246CLY/@@download/ENCFF246CLY.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF004PFD bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 302506590 ENCODE Processing Pipeline e96538a3aba7c55b8159eca4aff98a13 https://www.encodeproject.org/files/ENCFF004PFD/@@download/ENCFF004PFD.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF909WHG bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 373929495 ENCODE Processing Pipeline c37d54b77efe691f9281599e8bef69af https://www.encodeproject.org/files/ENCFF909WHG/@@download/ENCFF909WHG.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF800FPD bed narrowPeak conservative idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF107KOO, ENCFF139WDG, ENCFF157SGS, ENCFF547MET 681407 ENCODE Processing Pipeline fe83782b854704968300729e7ce4975b https://www.encodeproject.org/files/ENCFF800FPD/@@download/ENCFF800FPD.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF688LXO bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 289794129 ENCODE Processing Pipeline 36fd7b913a1f6975f3ea9c62d6e6b3ad https://www.encodeproject.org/files/ENCFF688LXO/@@download/ENCFF688LXO.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF863XWX bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 334967890 ENCODE Processing Pipeline 723d1b450fa277a17a6aee05a44e4193 https://www.encodeproject.org/files/ENCFF863XWX/@@download/ENCFF863XWX.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF278NWO bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 566460049 ENCODE Processing Pipeline ec0bdc7302f696cda20e0cc943b2e0b6 https://www.encodeproject.org/files/ENCFF278NWO/@@download/ENCFF278NWO.bigWig mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF139WDG bed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 4861337 ENCODE Processing Pipeline fdf7deb32c29f1937f2c63c4f9e3f610 https://www.encodeproject.org/files/ENCFF139WDG/@@download/ENCFF139WDG.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF077HAE bigBed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF107KOO 10488661 ENCODE Processing Pipeline 446eae02586de6df31ec9324406f7780 https://www.encodeproject.org/files/ENCFF077HAE/@@download/ENCFF077HAE.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF990RYP bigBed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF157SGS 10492235 ENCODE Processing Pipeline 1f8700ed7ef8b54b5d6e8fb123c77b44 https://www.encodeproject.org/files/ENCFF990RYP/@@download/ENCFF990RYP.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF107KOO bed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 4284889 ENCODE Processing Pipeline 9b64f8f77e282e0519322ff63dd53280 https://www.encodeproject.org/files/ENCFF107KOO/@@download/ENCFF107KOO.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF157SGS bed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 4281727 ENCODE Processing Pipeline 5ea938a65587b3c5fa9bc3fce9d09a0c https://www.encodeproject.org/files/ENCFF157SGS/@@download/ENCFF157SGS.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF711THP bigBed narrowPeak conservative idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF800FPD 1185425 ENCODE Processing Pipeline ae53f66b3120ed38e1a304c0f26f56b6 https://www.encodeproject.org/files/ENCFF711THP/@@download/ENCFF711THP.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF409RRE bed narrowPeak optimal idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF107KOO, ENCFF139WDG, ENCFF157SGS, ENCFF547MET 703430 ENCODE Processing Pipeline 44f9968428b833e87a382501c377e2d1 https://www.encodeproject.org/files/ENCFF409RRE/@@download/ENCFF409RRE.bed.gz mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF130OOT bigBed narrowPeak peaks and background as input for IDR ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF139WDG 11211134 ENCODE Processing Pipeline 7d80496b4413ac8aa63b5b007bcff311 https://www.encodeproject.org/files/ENCFF130OOT/@@download/ENCFF130OOT.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF568MTS bigBed narrowPeak optimal idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF409RRE 1215311 ENCODE Processing Pipeline cb9f0a3d36a4c88e8a847edfb7484169 https://www.encodeproject.org/files/ENCFF568MTS/@@download/ENCFF568MTS.bigBed mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF002BXY fastq reads ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 841035630 Bing Ren, UCSD 96ad01b51f1716ab442d91ae02343087 SRA:SRR3652403 https://www.encodeproject.org/files/ENCFF002BXY/@@download/ENCFF002BXY.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF002BYA fastq reads ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 813963435 Bing Ren, UCSD 561613eb729d77ff56db4fd2c62e3ac3 SRA:SRR3652402 https://www.encodeproject.org/files/ENCFF002BYA/@@download/ENCFF002BYA.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF761IUR bam unfiltered alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXY, ENCFF806TVZ 1077691192 ENCODE Processing Pipeline fa61f0ccd06140c542f72eb0669c2e44 https://www.encodeproject.org/files/ENCFF761IUR/@@download/ENCFF761IUR.bam mm10-minimal archived low read length, low read depth ENCFF025IDU bam unfiltered alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BYA, ENCFF806TVZ 1044711497 ENCODE Processing Pipeline 8f338ceb530fe1fd59f49af458008d29 https://www.encodeproject.org/files/ENCFF025IDU/@@download/ENCFF025IDU.bam mm10-minimal archived low read length, low read depth ENCFF012JCC bam alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BYA, ENCFF806TVZ 621988203 ENCODE Processing Pipeline b65b0eccf0cd1398229ee1e5ae43eeac https://www.encodeproject.org/files/ENCFF012JCC/@@download/ENCFF012JCC.bam mm10-minimal archived low read length, low read depth ENCFF098KIR bam alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXY, ENCFF806TVZ 640088334 ENCODE Processing Pipeline 895a08cdff9a29afa87c926851a1f814 https://www.encodeproject.org/files/ENCFF098KIR/@@download/ENCFF098KIR.bam mm10-minimal archived low read length, low read depth ENCFF282GJF bam unfiltered alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXY, ENCFF018NEO 1079297029 ENCODE Processing Pipeline a54c68ca7593efeb2f3dc8b56b743598 https://www.encodeproject.org/files/ENCFF282GJF/@@download/ENCFF282GJF.bam mm10 released low read length, low read depth ENCFF380ABS bam unfiltered alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BYA, ENCFF018NEO 1046292350 ENCODE Processing Pipeline 81ba2cdcaeb129135c5da74a0428c542 https://www.encodeproject.org/files/ENCFF380ABS/@@download/ENCFF380ABS.bam mm10 released low read length, low read depth ENCFF855ISH bam alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXY, ENCFF018NEO 639848145 ENCODE Processing Pipeline c0e788016ebf6bcc853aaa3b372285f2 https://www.encodeproject.org/files/ENCFF855ISH/@@download/ENCFF855ISH.bam mm10 released low read length, low read depth ENCFF018HYW bam alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BYA, ENCFF018NEO 621756686 ENCODE Processing Pipeline f98c118b706ae1d6b3b363968a146fec https://www.encodeproject.org/files/ENCFF018HYW/@@download/ENCFF018HYW.bam mm10 released low read length, low read depth ENCFF346EBC fastq reads ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2189726968 Bing Ren, UCSD 379baf621c84bcc253e75afd523a2ef1 SRA:SRR3651399 https://www.encodeproject.org/files/ENCFF346EBC/@@download/ENCFF346EBC.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released mild to moderate bottlenecking ENCFF936ZZV fastq reads ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2364310284 Bing Ren, UCSD bddc735450fc2a4fbef9f7963c61e911 SRA:SRR3651400 https://www.encodeproject.org/files/ENCFF936ZZV/@@download/ENCFF936ZZV.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released mild to moderate bottlenecking ENCFF668DYZ bam alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF346EBC, ENCFF806TVZ 1951367935 ENCODE Processing Pipeline 1970a81c5f4ee5d4ca7bb6f92bc04936 https://www.encodeproject.org/files/ENCFF668DYZ/@@download/ENCFF668DYZ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF640KET bam alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF936ZZV 2269468867 ENCODE Processing Pipeline 06cc79c422d2f134eb48ffc3f9bd2924 https://www.encodeproject.org/files/ENCFF640KET/@@download/ENCFF640KET.bam mm10-minimal archived mild to moderate bottlenecking ENCFF903XPR bed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF668DYZ 2258353 ENCODE Processing Pipeline 78b5e7d4eaa1552df3084a87e558af54 https://www.encodeproject.org/files/ENCFF903XPR/@@download/ENCFF903XPR.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF530DEF bed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF595MDP, ENCFF640KET 2533521 ENCODE Processing Pipeline 8f4e4dbf5e2b040e97613a851ef28079 https://www.encodeproject.org/files/ENCFF530DEF/@@download/ENCFF530DEF.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF725UIO bigBed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF378BBW 6720716 ENCODE Processing Pipeline 32c2826a07c205a51425d4ec44d2b377 https://www.encodeproject.org/files/ENCFF725UIO/@@download/ENCFF725UIO.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF617XUU bigBed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF903XPR 4492459 ENCODE Processing Pipeline 147d20e8c2fb135ed96605b259c34b6e https://www.encodeproject.org/files/ENCFF617XUU/@@download/ENCFF617XUU.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF885ATF bigBed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF530DEF 5084762 ENCODE Processing Pipeline 9295721672ff37f1da241d86d285c1c3 https://www.encodeproject.org/files/ENCFF885ATF/@@download/ENCFF885ATF.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF378BBW bed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF595MDP, ENCFF640KET, ENCFF668DYZ 3529890 ENCODE Processing Pipeline e2573c3f0dcb5d8e2405d0adc3b7b6f5 https://www.encodeproject.org/files/ENCFF378BBW/@@download/ENCFF378BBW.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF332NOX bigWig signal p-value ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF668DYZ 856647108 ENCODE Processing Pipeline bb8cafad84235ea7502252ead501db15 https://www.encodeproject.org/files/ENCFF332NOX/@@download/ENCFF332NOX.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF516RPM bigWig signal p-value ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF595MDP, ENCFF640KET 886849888 ENCODE Processing Pipeline 30d30f4e2859b03f097e35ac1e34d57d https://www.encodeproject.org/files/ENCFF516RPM/@@download/ENCFF516RPM.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF785KEP bigWig signal p-value ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF595MDP, ENCFF640KET, ENCFF668DYZ 1490634373 ENCODE Processing Pipeline 5cc5daf94b8d1f61587a4d0b1b51649b https://www.encodeproject.org/files/ENCFF785KEP/@@download/ENCFF785KEP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF798TFJ bigWig fold change over control ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF595MDP, ENCFF668DYZ 841592262 ENCODE Processing Pipeline bcd488aa596680ca35e656b9cecee4dc https://www.encodeproject.org/files/ENCFF798TFJ/@@download/ENCFF798TFJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF263RSX bigWig fold change over control ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF595MDP, ENCFF640KET 1086567678 ENCODE Processing Pipeline 64a6acde03f7b0cc98a7191cd7666771 https://www.encodeproject.org/files/ENCFF263RSX/@@download/ENCFF263RSX.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF453WCU bigWig fold change over control ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF595MDP, ENCFF640KET, ENCFF668DYZ 1541456325 ENCODE Processing Pipeline 3819a1c50a81798b22055b64074cf524 https://www.encodeproject.org/files/ENCFF453WCU/@@download/ENCFF453WCU.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF897OHS bed narrowPeak replicated peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF378BBW, ENCFF530DEF, ENCFF903XPR 1603732 ENCODE Processing Pipeline e8de5822309b07eb262aa4bfc7aad7b6 https://www.encodeproject.org/files/ENCFF897OHS/@@download/ENCFF897OHS.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF980BQW bigBed narrowPeak replicated peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF897OHS 3236435 ENCODE Processing Pipeline a84c1f8e2d37c2a23fbe57e5e132665e https://www.encodeproject.org/files/ENCFF980BQW/@@download/ENCFF980BQW.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF163XJP bam unfiltered alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF936ZZV 3118851017 ENCODE Processing Pipeline 2b8606b99ff0eba6806cd97040be2abe https://www.encodeproject.org/files/ENCFF163XJP/@@download/ENCFF163XJP.bam mm10 released mild to moderate bottlenecking ENCFF205VMX bam unfiltered alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF346EBC 2831502661 ENCODE Processing Pipeline 04b5f092a86a90a03db5b2151853bb69 https://www.encodeproject.org/files/ENCFF205VMX/@@download/ENCFF205VMX.bam mm10 released mild to moderate bottlenecking ENCFF864RQD bam alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF346EBC 1950940304 ENCODE Processing Pipeline fd0bc2d328799ed617f1fa2bf73f64ee https://www.encodeproject.org/files/ENCFF864RQD/@@download/ENCFF864RQD.bam mm10 released mild to moderate bottlenecking ENCFF666HAV bam alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF936ZZV 2268926643 ENCODE Processing Pipeline 7b5fe31f2257f83ae1f582e58dfd6072 https://www.encodeproject.org/files/ENCFF666HAV/@@download/ENCFF666HAV.bam mm10 released mild to moderate bottlenecking ENCFF394TIZ bed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF548IIV, ENCFF666HAV, ENCFF781DUP 2180872 ENCODE Processing Pipeline c645d25fe396e2fd2f9ba40cb4a3e712 https://www.encodeproject.org/files/ENCFF394TIZ/@@download/ENCFF394TIZ.bed.gz mm10 released mild to moderate bottlenecking ENCFF988KTS bed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF864RQD 2389792 ENCODE Processing Pipeline 1fe6c5562e5694684f136f73d6a975be https://www.encodeproject.org/files/ENCFF988KTS/@@download/ENCFF988KTS.bed.gz mm10 released mild to moderate bottlenecking ENCFF479CHP bed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF666HAV, ENCFF781DUP, ENCFF864RQD 3529911 ENCODE Processing Pipeline 11e3381d55cabd98f5ab3af0c1d47968 https://www.encodeproject.org/files/ENCFF479CHP/@@download/ENCFF479CHP.bed.gz mm10 released mild to moderate bottlenecking ENCFF773LIV bigBed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF988KTS 4686101 ENCODE Processing Pipeline 6a18e9bd09ca201b554ff85d45f71346 https://www.encodeproject.org/files/ENCFF773LIV/@@download/ENCFF773LIV.bigBed mm10 released mild to moderate bottlenecking ENCFF855SXN bigBed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF394TIZ 4418652 ENCODE Processing Pipeline aa3278f6e4f849a2840e357757848ceb https://www.encodeproject.org/files/ENCFF855SXN/@@download/ENCFF855SXN.bigBed mm10 released mild to moderate bottlenecking ENCFF334QFI bigBed narrowPeak peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF479CHP 6718380 ENCODE Processing Pipeline 6b87bb4641059a7c9fb9a4530b7b87a7 https://www.encodeproject.org/files/ENCFF334QFI/@@download/ENCFF334QFI.bigBed mm10 released mild to moderate bottlenecking ENCFF914GRR bigWig signal p-value ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF864RQD 626429695 ENCODE Processing Pipeline 661b93abb8f6db9e695c9b09a8ca7de4 https://www.encodeproject.org/files/ENCFF914GRR/@@download/ENCFF914GRR.bigWig mm10 released mild to moderate bottlenecking ENCFF737XIM bigWig signal p-value ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF548IIV, ENCFF666HAV, ENCFF781DUP 1085378035 ENCODE Processing Pipeline 03e48b376512a41882c2b91d24134bce https://www.encodeproject.org/files/ENCFF737XIM/@@download/ENCFF737XIM.bigWig mm10 released mild to moderate bottlenecking ENCFF025PGV bigWig signal p-value ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF666HAV, ENCFF781DUP, ENCFF864RQD 1332135389 ENCODE Processing Pipeline c68a2e1923684294fd3b5ce99e39c9d3 https://www.encodeproject.org/files/ENCFF025PGV/@@download/ENCFF025PGV.bigWig mm10 released mild to moderate bottlenecking ENCFF069LCU bigWig fold change over control ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF864RQD 799025538 ENCODE Processing Pipeline 5847dff3c79f0f0b02ab7c249cac367d https://www.encodeproject.org/files/ENCFF069LCU/@@download/ENCFF069LCU.bigWig mm10 released mild to moderate bottlenecking ENCFF773XAI bigWig fold change over control ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF548IIV, ENCFF666HAV, ENCFF781DUP 1145888355 ENCODE Processing Pipeline 142141edd33b4e77328ee29526564b86 https://www.encodeproject.org/files/ENCFF773XAI/@@download/ENCFF773XAI.bigWig mm10 released mild to moderate bottlenecking ENCFF612RDE bigWig fold change over control ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF666HAV, ENCFF781DUP, ENCFF864RQD 1542921206 ENCODE Processing Pipeline ee610c82715c7ffb4fa5b97722cf2d46 https://www.encodeproject.org/files/ENCFF612RDE/@@download/ENCFF612RDE.bigWig mm10 released mild to moderate bottlenecking ENCFF893KVM bigBed narrowPeak replicated peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF635JKX 3134974 ENCODE Processing Pipeline d692dd5c866e244e0f636f49deb57b5a https://www.encodeproject.org/files/ENCFF893KVM/@@download/ENCFF893KVM.bigBed mm10 released mild to moderate bottlenecking ENCFF635JKX bed narrowPeak replicated peaks ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF394TIZ, ENCFF479CHP, ENCFF988KTS 1554827 ENCODE Processing Pipeline 58a4c880925eae3e326db181ccfbb001 https://www.encodeproject.org/files/ENCFF635JKX/@@download/ENCFF635JKX.bed.gz mm10 released mild to moderate bottlenecking ENCFF010LWJ fastq reads ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1979820622 Bing Ren, UCSD ecdff69eceeb98ef396078a8ec30f570 SRA:SRR3651413 https://www.encodeproject.org/files/ENCFF010LWJ/@@download/ENCFF010LWJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released moderate library complexity, mild to moderate bottlenecking ENCFF613VJI fastq reads ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1275690351 Bing Ren, UCSD 1f5e02995f9d2144dbd40b0f396b4c8a SRA:SRR3651414 https://www.encodeproject.org/files/ENCFF613VJI/@@download/ENCFF613VJI.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released moderate library complexity, mild to moderate bottlenecking ENCFF006CZR bam alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF010LWJ, ENCFF806TVZ 1619949356 ENCODE Processing Pipeline eadea1e2b24fb4ecc8cd325ea3d230ec https://www.encodeproject.org/files/ENCFF006CZR/@@download/ENCFF006CZR.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF188VND bam alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF613VJI, ENCFF806TVZ 1073799349 ENCODE Processing Pipeline aa6c3abe159f378c03e60d6040ed5af5 https://www.encodeproject.org/files/ENCFF188VND/@@download/ENCFF188VND.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF990LUD bed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF188VND 953622 ENCODE Processing Pipeline d93532dbded52154ba24b87b73b93367 https://www.encodeproject.org/files/ENCFF990LUD/@@download/ENCFF990LUD.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF433TDH bigBed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF188VUC 2965837 ENCODE Processing Pipeline 03e13a5275b96f9720e8f2a7e1f23223 https://www.encodeproject.org/files/ENCFF433TDH/@@download/ENCFF433TDH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF032ADM bigBed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF990LUD 2780219 ENCODE Processing Pipeline f1404e558d9a5cc435466f9f396435fd https://www.encodeproject.org/files/ENCFF032ADM/@@download/ENCFF032ADM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF862AME bigWig signal p-value ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF006CZR, ENCFF120NRT 805990126 ENCODE Processing Pipeline 669e4927908019958da70a917befdb05 https://www.encodeproject.org/files/ENCFF862AME/@@download/ENCFF862AME.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF188VUC bed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF006CZR, ENCFF120NRT 1039095 ENCODE Processing Pipeline d61ab89fcc47c055fba0e1f8fecbc20b https://www.encodeproject.org/files/ENCFF188VUC/@@download/ENCFF188VUC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF277EJR bed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF006CZR, ENCFF120NRT, ENCFF171GAD, ENCFF188VND 1114437 ENCODE Processing Pipeline d1d6ea28470c90e1794e222f3a4659e4 https://www.encodeproject.org/files/ENCFF277EJR/@@download/ENCFF277EJR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF111GPH bigBed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF277EJR 3057550 ENCODE Processing Pipeline cebbb5da2355b1213288f2afd013468e https://www.encodeproject.org/files/ENCFF111GPH/@@download/ENCFF111GPH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF215VCD bigWig signal p-value ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF188VND 500491449 ENCODE Processing Pipeline db62357a332e438db406b7ffcd2cb89f https://www.encodeproject.org/files/ENCFF215VCD/@@download/ENCFF215VCD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF745SRD bigWig fold change over control ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF006CZR, ENCFF120NRT 774186024 ENCODE Processing Pipeline 4cbaf839a2466884fe5ecd7d91d9c85b https://www.encodeproject.org/files/ENCFF745SRD/@@download/ENCFF745SRD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF723ARI bigWig signal p-value ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF006CZR, ENCFF120NRT, ENCFF171GAD, ENCFF188VND 1103930510 ENCODE Processing Pipeline 327e41cb7c728473d85e9096bc616b3e https://www.encodeproject.org/files/ENCFF723ARI/@@download/ENCFF723ARI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF342HOC bigWig fold change over control ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF188VND 520327246 ENCODE Processing Pipeline 083774915299018135a44adfc44dc5bd https://www.encodeproject.org/files/ENCFF342HOC/@@download/ENCFF342HOC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF630OMJ bigWig fold change over control ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF006CZR, ENCFF120NRT, ENCFF171GAD, ENCFF188VND 1248893908 ENCODE Processing Pipeline b9414896774d4db215e4db9f663202fe https://www.encodeproject.org/files/ENCFF630OMJ/@@download/ENCFF630OMJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF352LXZ bed narrowPeak replicated peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF188VUC, ENCFF277EJR, ENCFF990LUD 1202048 ENCODE Processing Pipeline f1f54b660880a8bd40b3f11c9fe411f3 https://www.encodeproject.org/files/ENCFF352LXZ/@@download/ENCFF352LXZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF392IHT bigBed narrowPeak replicated peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF352LXZ 2479802 ENCODE Processing Pipeline 2a146174a40e4aa10fd8b679931d80f5 https://www.encodeproject.org/files/ENCFF392IHT/@@download/ENCFF392IHT.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF110KFL bam alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF613VJI 1073684898 ENCODE Processing Pipeline affef4bb45ac56a211ea2c76beed4758 https://www.encodeproject.org/files/ENCFF110KFL/@@download/ENCFF110KFL.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF276WOD bam unfiltered alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF010LWJ, ENCFF018NEO 2376784905 ENCODE Processing Pipeline 277a79ca247e89ad393b75c609c46a25 https://www.encodeproject.org/files/ENCFF276WOD/@@download/ENCFF276WOD.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF676EGB bam unfiltered alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF613VJI 1515643291 ENCODE Processing Pipeline 9588083a7838835df511886cdda73a8e https://www.encodeproject.org/files/ENCFF676EGB/@@download/ENCFF676EGB.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF773CUR bam alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF010LWJ, ENCFF018NEO 1619691580 ENCODE Processing Pipeline 584cdba763b30715239b883046fc4a04 https://www.encodeproject.org/files/ENCFF773CUR/@@download/ENCFF773CUR.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF927PSP bed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF773CUR, ENCFF865QGZ 1040033 ENCODE Processing Pipeline ecb086fedc543582aab7564696bf00ce https://www.encodeproject.org/files/ENCFF927PSP/@@download/ENCFF927PSP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF566SWI bed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF110KFL, ENCFF438RYK 953965 ENCODE Processing Pipeline e7a73e08679065b10d249522ec0bc4fb https://www.encodeproject.org/files/ENCFF566SWI/@@download/ENCFF566SWI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF384BDN bed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF110KFL, ENCFF438RYK, ENCFF773CUR, ENCFF865QGZ 1137454 ENCODE Processing Pipeline 5c3fec7bf8f012ec39046e0708b460c5 https://www.encodeproject.org/files/ENCFF384BDN/@@download/ENCFF384BDN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF619UZL bigBed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF927PSP 2969198 ENCODE Processing Pipeline b9d92dd270afeb18cf1d2b24fc65a51c https://www.encodeproject.org/files/ENCFF619UZL/@@download/ENCFF619UZL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF730DUS bigBed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF566SWI 2781763 ENCODE Processing Pipeline 259449a83caace954f801b9d739fdbc1 https://www.encodeproject.org/files/ENCFF730DUS/@@download/ENCFF730DUS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF978YWN bigBed narrowPeak peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF384BDN 3124342 ENCODE Processing Pipeline d41543177a7d817e7770faffb6c87adf https://www.encodeproject.org/files/ENCFF978YWN/@@download/ENCFF978YWN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF888XLE bigWig signal p-value ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF773CUR, ENCFF865QGZ 675385561 ENCODE Processing Pipeline b2a215404f81f7800a2b0073babdd010 https://www.encodeproject.org/files/ENCFF888XLE/@@download/ENCFF888XLE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF121DCC bigWig signal p-value ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF110KFL, ENCFF438RYK 570038747 ENCODE Processing Pipeline 8013b19697c9d0d0cdd6fe1ada54732d https://www.encodeproject.org/files/ENCFF121DCC/@@download/ENCFF121DCC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF806EMY bigWig signal p-value ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF110KFL, ENCFF438RYK, ENCFF773CUR, ENCFF865QGZ 982915900 ENCODE Processing Pipeline f2fc2346e16726e0fedd0afacbc61b37 https://www.encodeproject.org/files/ENCFF806EMY/@@download/ENCFF806EMY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF295BBW bigWig fold change over control ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF773CUR, ENCFF865QGZ 778053602 ENCODE Processing Pipeline 15e6acdabee61a97a3bf27b1e13cc521 https://www.encodeproject.org/files/ENCFF295BBW/@@download/ENCFF295BBW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF355GSB bigWig fold change over control ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF110KFL, ENCFF438RYK 519956508 ENCODE Processing Pipeline 40ee858cdd0b15cbae72e516fadc8759 https://www.encodeproject.org/files/ENCFF355GSB/@@download/ENCFF355GSB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF899RFO bigWig fold change over control ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF110KFL, ENCFF438RYK, ENCFF773CUR, ENCFF865QGZ 1222555367 ENCODE Processing Pipeline ff91a1bf0b7e43b929008916205fff3f https://www.encodeproject.org/files/ENCFF899RFO/@@download/ENCFF899RFO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF815RAK bed narrowPeak replicated peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF384BDN, ENCFF566SWI, ENCFF927PSP 1198582 ENCODE Processing Pipeline fcd02972096065cb032a97e6299463b9 https://www.encodeproject.org/files/ENCFF815RAK/@@download/ENCFF815RAK.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF774OED bigBed narrowPeak replicated peaks ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF815RAK 2480564 ENCODE Processing Pipeline 5dd87696b5603fcbd231b5316a16f3ce https://www.encodeproject.org/files/ENCFF774OED/@@download/ENCFF774OED.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001NJX bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NKF 248917160 Michael Snyder, Stanford d1df49e9a00f7e2239265c2e9145fbd2 https://www.encodeproject.org/files/ENCFF001NJX/@@download/ENCFF001NJX.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NJY bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NKE 322606792 Michael Snyder, Stanford 2325cfbbb721ea5b87568c5a40540828 https://www.encodeproject.org/files/ENCFF001NJY/@@download/ENCFF001NJY.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NJZ bigBed narrowPeak peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIJ 1577664 Michael Snyder, Stanford 388032aa76b593aa1a936743529c97b0 https://www.encodeproject.org/files/ENCFF001NJZ/@@download/ENCFF001NJZ.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NKA bigWig signal ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJX, ENCFF001NJY 217605297 Michael Snyder, Stanford c7fed341bfdbed6d1bb3bf8127a4356f https://www.encodeproject.org/files/ENCFF001NKA/@@download/ENCFF001NKA.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NKE fastq reads ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 650470421 Michael Snyder, Stanford 31b14a3202d378c267a2d5e2ba810053 https://www.encodeproject.org/files/ENCFF001NKE/@@download/ENCFF001NKE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NKF fastq reads ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 903742161 Michael Snyder, Stanford 48d2e4d630f76556aedfd87e7444f358 https://www.encodeproject.org/files/ENCFF001NKF/@@download/ENCFF001NKF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001YIJ bed narrowPeak peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJX, ENCFF001NJY 627024 Michael Snyder, Stanford ebefc0ce1db4a4f8fb0ea6e16f156668 https://www.encodeproject.org/files/ENCFF001YIJ/@@download/ENCFF001YIJ.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF327CLX bam unfiltered alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKE, ENCFF018NEO 681734396 ENCODE Processing Pipeline f6356fb65027dee352bf9d2dae80e192 https://www.encodeproject.org/files/ENCFF327CLX/@@download/ENCFF327CLX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF359XWZ bam unfiltered alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKF, ENCFF018NEO 992744205 ENCODE Processing Pipeline 697cbb8e51984502eb1da6b064e0ad4e https://www.encodeproject.org/files/ENCFF359XWZ/@@download/ENCFF359XWZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF825KCM bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKE, ENCFF018NEO 441844616 ENCODE Processing Pipeline 3fa493bdb8ab2426f4967d0870b52178 https://www.encodeproject.org/files/ENCFF825KCM/@@download/ENCFF825KCM.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF015RVC bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKF, ENCFF018NEO 611716522 ENCODE Processing Pipeline 5a5a1d22defa4d692dd0ae3690f4bc5f https://www.encodeproject.org/files/ENCFF015RVC/@@download/ENCFF015RVC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF957GOP bigWig signal p-value ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF825KCM 259319895 ENCODE Processing Pipeline cc2aaa1a2a0c32ae6e3371848427e405 https://www.encodeproject.org/files/ENCFF957GOP/@@download/ENCFF957GOP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF346GEQ bigWig signal p-value ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF015RVC, ENCFF528WZN 270328430 ENCODE Processing Pipeline 9aa450d4cef7fdb48ef325b8b0de4e8b https://www.encodeproject.org/files/ENCFF346GEQ/@@download/ENCFF346GEQ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF744FLJ bigWig signal p-value ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015RVC, ENCFF528WZN, ENCFF825KCM 328220910 ENCODE Processing Pipeline f8d1931c3b515d1054c48f3788d9afbd https://www.encodeproject.org/files/ENCFF744FLJ/@@download/ENCFF744FLJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF944XTS bigWig fold change over control ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF825KCM 149680121 ENCODE Processing Pipeline a10211039187cac4b285eef441761fee https://www.encodeproject.org/files/ENCFF944XTS/@@download/ENCFF944XTS.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF858GWL bigWig fold change over control ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF015RVC, ENCFF528WZN 226077880 ENCODE Processing Pipeline 2a2043102ca3eea9ed35baf51758d9d1 https://www.encodeproject.org/files/ENCFF858GWL/@@download/ENCFF858GWL.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF847BNC bigWig fold change over control ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015RVC, ENCFF528WZN, ENCFF825KCM 320083747 ENCODE Processing Pipeline aa1ffba343cda57989600b34ed3dc275 https://www.encodeproject.org/files/ENCFF847BNC/@@download/ENCFF847BNC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF404OWN bed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF825KCM 6185993 ENCODE Processing Pipeline cd9b518499f2b21c8c77c096be682681 https://www.encodeproject.org/files/ENCFF404OWN/@@download/ENCFF404OWN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF351WCO bed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015RVC, ENCFF528WZN, ENCFF825KCM 6895697 ENCODE Processing Pipeline 9b45347fae77ff3755ba9cf3982b02e1 https://www.encodeproject.org/files/ENCFF351WCO/@@download/ENCFF351WCO.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF189GIV bed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF015RVC, ENCFF528WZN 6529532 ENCODE Processing Pipeline 70d09092f25e82c33fe471e88946604e https://www.encodeproject.org/files/ENCFF189GIV/@@download/ENCFF189GIV.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF083BFO bigBed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF404OWN 11719931 ENCODE Processing Pipeline ba2d51baa57f5ef59e6fec31dfaa1ffe https://www.encodeproject.org/files/ENCFF083BFO/@@download/ENCFF083BFO.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF529XLU bigBed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF189GIV 12006419 ENCODE Processing Pipeline e67c1bf8b7444fe01cac46d1298c8399 https://www.encodeproject.org/files/ENCFF529XLU/@@download/ENCFF529XLU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF004PZE bigBed narrowPeak peaks and background as input for IDR ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF351WCO 11761890 ENCODE Processing Pipeline 869acfc260a9761f414993e2fe2fdc2d https://www.encodeproject.org/files/ENCFF004PZE/@@download/ENCFF004PZE.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF908HHC bed narrowPeak conservative idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF189GIV, ENCFF351WCO, ENCFF404OWN, ENCFF547MET 507769 ENCODE Processing Pipeline 5752df86d852a731e1aa1765b4839fa7 https://www.encodeproject.org/files/ENCFF908HHC/@@download/ENCFF908HHC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF849UUG bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF908HHC 1116770 ENCODE Processing Pipeline 11ff7d167b2f29d35287227e5893bbb9 https://www.encodeproject.org/files/ENCFF849UUG/@@download/ENCFF849UUG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF125PID bed narrowPeak optimal idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF189GIV, ENCFF351WCO, ENCFF404OWN, ENCFF547MET 545905 ENCODE Processing Pipeline 0cc9791c704957ab32653bf5c161195f https://www.encodeproject.org/files/ENCFF125PID/@@download/ENCFF125PID.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF878YVT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF125PID 1183507 ENCODE Processing Pipeline c46396407acb597b342c65f1579cf6a7 https://www.encodeproject.org/files/ENCFF878YVT/@@download/ENCFF878YVT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF764TPO fastq reads ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2356950337 Bing Ren, UCSD b83f897ddf101a652c96e893550c52c2 SRA:SRR3652254 https://www.encodeproject.org/files/ENCFF764TPO/@@download/ENCFF764TPO.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF742ZUV fastq reads ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 268572209 Bing Ren, UCSD 8b5b5a6bd281f4278e3282017712f051 SRA:SRR3652252 https://www.encodeproject.org/files/ENCFF742ZUV/@@download/ENCFF742ZUV.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF121DFO fastq reads ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2059609497 Bing Ren, UCSD 88a93d825456f38894514abec227f815 SRA:SRR3652253 https://www.encodeproject.org/files/ENCFF121DFO/@@download/ENCFF121DFO.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF727JWW bam alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF764TPO, ENCFF806TVZ 2127390555 ENCODE Processing Pipeline c568868f451009cfcecf444e34d0d901 https://www.encodeproject.org/files/ENCFF727JWW/@@download/ENCFF727JWW.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF237FPG bam alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF121DFO, ENCFF742ZUV, ENCFF806TVZ 2062342949 ENCODE Processing Pipeline f2a92a2cc09822c5ba70537064911434 https://www.encodeproject.org/files/ENCFF237FPG/@@download/ENCFF237FPG.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF757GYA bed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF237FPG, ENCFF581EXC, ENCFF727JWW 2883049 ENCODE Processing Pipeline a71ac36ce3ff7be3005ef9e2e2caad38 https://www.encodeproject.org/files/ENCFF757GYA/@@download/ENCFF757GYA.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF153IBJ bed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF581EXC, ENCFF727JWW 2790828 ENCODE Processing Pipeline eb8935a3e1d72bea34045f496ebbeb7d https://www.encodeproject.org/files/ENCFF153IBJ/@@download/ENCFF153IBJ.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF715AKX bed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF237FPG 2258174 ENCODE Processing Pipeline 9dd1ba246243b63f97dec094f6e4a168 https://www.encodeproject.org/files/ENCFF715AKX/@@download/ENCFF715AKX.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF657BSX bigBed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF715AKX 5137515 ENCODE Processing Pipeline a5bcac7c885287d759757d75481a6a23 https://www.encodeproject.org/files/ENCFF657BSX/@@download/ENCFF657BSX.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF717DOK bigBed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF153IBJ 6253876 ENCODE Processing Pipeline a250ae95776ab044093057c1e1caa1ff https://www.encodeproject.org/files/ENCFF717DOK/@@download/ENCFF717DOK.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF344NGI bigBed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF757GYA 6363344 ENCODE Processing Pipeline a28757b296f11099184da8baad735c6d https://www.encodeproject.org/files/ENCFF344NGI/@@download/ENCFF344NGI.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF201SNK bigWig signal p-value ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF581EXC, ENCFF727JWW 1073022616 ENCODE Processing Pipeline b367e0adb81b116fccf0da950258f316 https://www.encodeproject.org/files/ENCFF201SNK/@@download/ENCFF201SNK.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF523UOM bigWig signal p-value ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF237FPG 828180649 ENCODE Processing Pipeline fadf2eb48b2e48d4f49391d131ba9667 https://www.encodeproject.org/files/ENCFF523UOM/@@download/ENCFF523UOM.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF697MRH bigWig signal p-value ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF237FPG, ENCFF581EXC, ENCFF727JWW 1535147191 ENCODE Processing Pipeline 3c5c478e1c04d20125ba155b3fff0040 https://www.encodeproject.org/files/ENCFF697MRH/@@download/ENCFF697MRH.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF819VRE bigWig fold change over control ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF071EKX, ENCFF581EXC, ENCFF727JWW 1072560896 ENCODE Processing Pipeline 49a7315cf065ef254b86f1771fc6a13c https://www.encodeproject.org/files/ENCFF819VRE/@@download/ENCFF819VRE.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF010DUI bigWig fold change over control ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF071EKX, ENCFF237FPG 832403706 ENCODE Processing Pipeline 6db0d815ce34ea4b00e3ba6c44d1b4cc https://www.encodeproject.org/files/ENCFF010DUI/@@download/ENCFF010DUI.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF385UEF bigWig fold change over control ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF071EKX, ENCFF237FPG, ENCFF581EXC, ENCFF727JWW 1552375198 ENCODE Processing Pipeline 882a257d32deb4d7fa31d5e2acec3c91 https://www.encodeproject.org/files/ENCFF385UEF/@@download/ENCFF385UEF.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF353XCH bigBed narrowPeak replicated peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF914LMW 3903704 ENCODE Processing Pipeline 2ab60f869a5af577e3945b057562c738 https://www.encodeproject.org/files/ENCFF353XCH/@@download/ENCFF353XCH.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF914LMW bed narrowPeak replicated peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF153IBJ, ENCFF715AKX, ENCFF757GYA 2201559 ENCODE Processing Pipeline 0e19767f70e8c02e3a1b6986a3bae588 https://www.encodeproject.org/files/ENCFF914LMW/@@download/ENCFF914LMW.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF553PMW bam unfiltered alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF121DFO, ENCFF742ZUV 3090513467 ENCODE Processing Pipeline 490bad993e0f6bba92d1f4440abc80a7 https://www.encodeproject.org/files/ENCFF553PMW/@@download/ENCFF553PMW.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF753ANE bam unfiltered alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF764TPO 3120525162 ENCODE Processing Pipeline db64ad14c3a9e72f81180e9a29d9ce4b https://www.encodeproject.org/files/ENCFF753ANE/@@download/ENCFF753ANE.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF345GFJ bam alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF121DFO, ENCFF742ZUV 2061837434 ENCODE Processing Pipeline 542882be58bfea9ff3f3942eb1c5a11e https://www.encodeproject.org/files/ENCFF345GFJ/@@download/ENCFF345GFJ.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF474ZIJ bam alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF764TPO 2126878374 ENCODE Processing Pipeline 99a800d2e1cb326f3f0bd59cb98038d5 https://www.encodeproject.org/files/ENCFF474ZIJ/@@download/ENCFF474ZIJ.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF101ATN bed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF270SEO, ENCFF474ZIJ, ENCFF652BTE 2806328 ENCODE Processing Pipeline 32d86d392907cfe268770d75240811c0 https://www.encodeproject.org/files/ENCFF101ATN/@@download/ENCFF101ATN.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF803KRR bed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF345GFJ 2242781 ENCODE Processing Pipeline 1729bc7e01ceb01340713b0d544479a5 https://www.encodeproject.org/files/ENCFF803KRR/@@download/ENCFF803KRR.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF658WGX bed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF345GFJ, ENCFF474ZIJ, ENCFF652BTE 2883407 ENCODE Processing Pipeline 8307cc0c0e93e872aedc63d93f12da5d https://www.encodeproject.org/files/ENCFF658WGX/@@download/ENCFF658WGX.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF309JIJ bigBed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF101ATN 6270765 ENCODE Processing Pipeline 74386f0cf8f222fed70c8f0a5abfb2c6 https://www.encodeproject.org/files/ENCFF309JIJ/@@download/ENCFF309JIJ.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF744VAJ bigBed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF803KRR 5110368 ENCODE Processing Pipeline c3c4fcb02eb8509f010933c70d9aa358 https://www.encodeproject.org/files/ENCFF744VAJ/@@download/ENCFF744VAJ.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF755THX bigBed narrowPeak peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF658WGX 6366428 ENCODE Processing Pipeline 997ed97d6da4354d07a41476be14fd36 https://www.encodeproject.org/files/ENCFF755THX/@@download/ENCFF755THX.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF884RRD bigWig signal p-value ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF270SEO, ENCFF474ZIJ, ENCFF652BTE 936469912 ENCODE Processing Pipeline 8f6f32ea0b96569295840667f9809589 https://www.encodeproject.org/files/ENCFF884RRD/@@download/ENCFF884RRD.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF340IKX bigWig signal p-value ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF345GFJ 813301173 ENCODE Processing Pipeline 8bf092deda001b99282d75bec6e6f790 https://www.encodeproject.org/files/ENCFF340IKX/@@download/ENCFF340IKX.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF047JWS bigWig signal p-value ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF345GFJ, ENCFF474ZIJ, ENCFF652BTE 1534877495 ENCODE Processing Pipeline def4e6d833853b9849b72412e6204f9d https://www.encodeproject.org/files/ENCFF047JWS/@@download/ENCFF047JWS.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF501VQV bigWig fold change over control ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF270SEO, ENCFF474ZIJ, ENCFF652BTE 1069605307 ENCODE Processing Pipeline e5cf01c86c2b0b58535e91d41de067e1 https://www.encodeproject.org/files/ENCFF501VQV/@@download/ENCFF501VQV.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF059VYE bigWig fold change over control ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF345GFJ 825067905 ENCODE Processing Pipeline 442cb707757ed8b74f214cb059ebd4eb https://www.encodeproject.org/files/ENCFF059VYE/@@download/ENCFF059VYE.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF073JCW bigWig fold change over control ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF270SEO, ENCFF345GFJ, ENCFF474ZIJ, ENCFF652BTE 1556645801 ENCODE Processing Pipeline 1ba1211fda5209ece1be5922ac5d5d64 https://www.encodeproject.org/files/ENCFF073JCW/@@download/ENCFF073JCW.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF305LVL bed narrowPeak replicated peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF101ATN, ENCFF658WGX, ENCFF803KRR 2177559 ENCODE Processing Pipeline d72bf39a1cbde726a23ca39f446923c1 https://www.encodeproject.org/files/ENCFF305LVL/@@download/ENCFF305LVL.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF549CYB bigBed narrowPeak replicated peaks ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF305LVL 3859039 ENCODE Processing Pipeline 0701009ccd7543ce48aa63c297d46389 https://www.encodeproject.org/files/ENCFF549CYB/@@download/ENCFF549CYB.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF251VUY fastq reads ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 760334773 Michael Snyder, Stanford aa2d1d691dcb7eb45a83a5c9f0beb75f https://www.encodeproject.org/files/ENCFF251VUY/@@download/ENCFF251VUY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF376KBS fastq reads ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 848829845 Michael Snyder, Stanford 4753cb5e7fb3a3fdc9917089d2d0ba4b https://www.encodeproject.org/files/ENCFF376KBS/@@download/ENCFF376KBS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF223NZV bam alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 ENCFF251VUY 844726086 Michael Snyder, Stanford 75226c48e36203aae2b07c48d6ba67c9 https://www.encodeproject.org/files/ENCFF223NZV/@@download/ENCFF223NZV.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF593UBW bam alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 ENCFF376KBS 943113712 Michael Snyder, Stanford 92b8d4e71129b6e7d130445953d5fa23 https://www.encodeproject.org/files/ENCFF593UBW/@@download/ENCFF593UBW.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF623ZBZ bam unfiltered alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF251VUY 911697353 ENCODE Processing Pipeline fee98b6f985900f6e99e31b692aa59ae https://www.encodeproject.org/files/ENCFF623ZBZ/@@download/ENCFF623ZBZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF118WZA bam unfiltered alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF376KBS 1001686600 ENCODE Processing Pipeline 2a032934b374bf018e4073fcdc3629a5 https://www.encodeproject.org/files/ENCFF118WZA/@@download/ENCFF118WZA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF555OYI bam alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF376KBS 693110880 ENCODE Processing Pipeline 2eb54f6374847cca6e1711ac2f0d409a https://www.encodeproject.org/files/ENCFF555OYI/@@download/ENCFF555OYI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF095OCL bam alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF251VUY 644432538 ENCODE Processing Pipeline d747738273c02ce5898aaa4c6d3950ab https://www.encodeproject.org/files/ENCFF095OCL/@@download/ENCFF095OCL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF332JGO bed narrowPeak peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 ENCFF095OCL, ENCFF171OVT 2466302 ENCODE Processing Pipeline 68ed60eba6c037dbc106bbc17032648d https://www.encodeproject.org/files/ENCFF332JGO/@@download/ENCFF332JGO.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF154BXE bed narrowPeak peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF095OCL, ENCFF171OVT, ENCFF555OYI 2060534 ENCODE Processing Pipeline 33cee2e0a4e6ff9882fe61e2bd9efbe0 https://www.encodeproject.org/files/ENCFF154BXE/@@download/ENCFF154BXE.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF915PNM bigBed narrowPeak peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 ENCFF332JGO 6006947 ENCODE Processing Pipeline 489cbe6d1226d40b02fedca82fe7abdd https://www.encodeproject.org/files/ENCFF915PNM/@@download/ENCFF915PNM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF030QQJ bigWig signal p-value ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF555OYI 298556030 ENCODE Processing Pipeline 96b973df8f318306eed9608e0507436d https://www.encodeproject.org/files/ENCFF030QQJ/@@download/ENCFF030QQJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF741IXW bed narrowPeak replicated peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF150CGK, ENCFF154BXE, ENCFF332JGO 2103158 ENCODE Processing Pipeline 06f2fbfec7e30df574db5b8423fabfc7 https://www.encodeproject.org/files/ENCFF741IXW/@@download/ENCFF741IXW.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF897ZIQ bigBed narrowPeak replicated peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF741IXW 3971673 ENCODE Processing Pipeline e2e4f95b4468047969c481a21a2ecd35 https://www.encodeproject.org/files/ENCFF897ZIQ/@@download/ENCFF897ZIQ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF892KTC bigBed narrowPeak peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF154BXE 4909639 ENCODE Processing Pipeline 5e9468b5f4e584ab31f027a64ce52026 https://www.encodeproject.org/files/ENCFF892KTC/@@download/ENCFF892KTC.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF789SIC bigWig fold change over control ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF095OCL, ENCFF171OVT, ENCFF555OYI 488696154 ENCODE Processing Pipeline 2c6227aafd7b2729bb07391506489020 https://www.encodeproject.org/files/ENCFF789SIC/@@download/ENCFF789SIC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF870RXA bigWig fold change over control ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF555OYI 306453906 ENCODE Processing Pipeline 6de3471fe2bea5277dfd02baf3eb7b53 https://www.encodeproject.org/files/ENCFF870RXA/@@download/ENCFF870RXA.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF150CGK bed narrowPeak peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF555OYI 2511334 ENCODE Processing Pipeline bb0c932d12c59b082c9263dd1c1e7012 https://www.encodeproject.org/files/ENCFF150CGK/@@download/ENCFF150CGK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF432DIA bigBed narrowPeak peaks ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 ENCFF150CGK 6011012 ENCODE Processing Pipeline 6020dc4815d60e4db20895438e45740c https://www.encodeproject.org/files/ENCFF432DIA/@@download/ENCFF432DIA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF924LAP bigWig signal p-value ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 ENCFF095OCL, ENCFF171OVT 294600310 ENCODE Processing Pipeline ca682d37894fd2418d016ebf4ace6261 https://www.encodeproject.org/files/ENCFF924LAP/@@download/ENCFF924LAP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF254XSP bigWig fold change over control ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 ENCFF095OCL, ENCFF171OVT 283142355 ENCODE Processing Pipeline 05602b2c077ce28134925a04a27d4f22 https://www.encodeproject.org/files/ENCFF254XSP/@@download/ENCFF254XSP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF763IGG bigWig signal p-value ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF095OCL, ENCFF171OVT, ENCFF555OYI 283410854 ENCODE Processing Pipeline 7bfcf184b5dda4aafab3634e9157fa7f https://www.encodeproject.org/files/ENCFF763IGG/@@download/ENCFF763IGG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF002DSZ fastq reads ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 1 36 single-ended 351432439 Bing Ren, UCSD a3e5e2eed98395f65e4ca3f20c921388 SRA:SRR3651274 https://www.encodeproject.org/files/ENCFF002DSZ/@@download/ENCFF002DSZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTA fastq reads ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 2 36 single-ended 648697078 Bing Ren, UCSD 7693df094797c7ca52c5ab675337184a SRA:SRR3651275 https://www.encodeproject.org/files/ENCFF002DTA/@@download/ENCFF002DTA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTI fastq reads ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 1 50 single-ended 1867466367 Bing Ren, UCSD 991f0b39025eca152f39d84b230f3f05 SRA:SRR3651273 https://www.encodeproject.org/files/ENCFF002DTI/@@download/ENCFF002DTI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF309UND bam alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF002DTI, ENCFF806TVZ 1525209871 ENCODE Processing Pipeline e4419ea36d37a81d6351f4fa12c9c329 https://www.encodeproject.org/files/ENCFF309UND/@@download/ENCFF309UND.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF897PBA fastq reads ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 3 50 single-ended 1394570427 Bing Ren, UCSD fc151f625cadc63436ac419d183016ae SRA:SRR3651276 https://www.encodeproject.org/files/ENCFF897PBA/@@download/ENCFF897PBA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUS/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF992DFH bam alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF002DSZ, ENCFF002DTA, ENCFF806TVZ, ENCFF897PBA 1321127182 ENCODE Processing Pipeline 91276e53945f165433ddcb5914998944 https://www.encodeproject.org/files/ENCFF992DFH/@@download/ENCFF992DFH.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF684QMZ bigBed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF335CDD 4612230 ENCODE Processing Pipeline 355a59080ed054bf7c4f86e58e08ebaf https://www.encodeproject.org/files/ENCFF684QMZ/@@download/ENCFF684QMZ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF872WIJ bigBed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF265KMQ 1646334 ENCODE Processing Pipeline 167ee5f2a1fee3d5c2014d58f3ed55da https://www.encodeproject.org/files/ENCFF872WIJ/@@download/ENCFF872WIJ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF081BIK bigWig signal p-value ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF204GFG, ENCFF309UND, ENCFF695ODM, ENCFF992DFH 497725001 ENCODE Processing Pipeline 9a43b34fba9bd6b925b16ab349d8129c https://www.encodeproject.org/files/ENCFF081BIK/@@download/ENCFF081BIK.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF690FOA bigWig fold change over control ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF204GFG, ENCFF309UND, ENCFF695ODM, ENCFF992DFH 802490865 ENCODE Processing Pipeline 02e6794cfed4cd7656d6041940aeedbb https://www.encodeproject.org/files/ENCFF690FOA/@@download/ENCFF690FOA.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF946WXI bigWig signal p-value ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF992DFH 476787603 ENCODE Processing Pipeline 62539bb1ef5442cf3f4fba146a5b0f0a https://www.encodeproject.org/files/ENCFF946WXI/@@download/ENCFF946WXI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF209PTO bigWig fold change over control ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF992DFH 462163564 ENCODE Processing Pipeline a110aa897ea83e3f8a053ffaacf8e27b https://www.encodeproject.org/files/ENCFF209PTO/@@download/ENCFF209PTO.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF651LRN bed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF204GFG, ENCFF309UND, ENCFF695ODM 573728 ENCODE Processing Pipeline 5f9662028500989e5f25b3de631e473d https://www.encodeproject.org/files/ENCFF651LRN/@@download/ENCFF651LRN.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF265KMQ bed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF204GFG, ENCFF309UND, ENCFF695ODM, ENCFF992DFH 811649 ENCODE Processing Pipeline 20cfacd43ea84000ceb2d6e3c58dd493 https://www.encodeproject.org/files/ENCFF265KMQ/@@download/ENCFF265KMQ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF335CDD bed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF204GFG, ENCFF695ODM, ENCFF992DFH 2480354 ENCODE Processing Pipeline d12f076f7ecee040e2a7c6ea15a1e360 https://www.encodeproject.org/files/ENCFF335CDD/@@download/ENCFF335CDD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF141ILH bigBed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF651LRN 1355235 ENCODE Processing Pipeline 07b5b40ec0f7ccb602248cc027cb0076 https://www.encodeproject.org/files/ENCFF141ILH/@@download/ENCFF141ILH.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF850BOX bigWig signal p-value ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF204GFG, ENCFF309UND, ENCFF695ODM 523360449 ENCODE Processing Pipeline 4aa5e5db88d3a46a6bde7255da61a392 https://www.encodeproject.org/files/ENCFF850BOX/@@download/ENCFF850BOX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF052NCS bigWig fold change over control ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF204GFG, ENCFF309UND, ENCFF695ODM 525564123 ENCODE Processing Pipeline 7b841169e15e2d2a0ea90f2e230bbb24 https://www.encodeproject.org/files/ENCFF052NCS/@@download/ENCFF052NCS.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF648LLQ bigBed narrowPeak replicated peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF658VZK 1182448 ENCODE Processing Pipeline 7e0c3ec78454097f4f0efa167297dc08 https://www.encodeproject.org/files/ENCFF648LLQ/@@download/ENCFF648LLQ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF658VZK bed narrowPeak replicated peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF265KMQ, ENCFF335CDD, ENCFF651LRN 604015 ENCODE Processing Pipeline 02c2e1744327dd89d43c4ae0249953e1 https://www.encodeproject.org/files/ENCFF658VZK/@@download/ENCFF658VZK.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF233TMX bam unfiltered alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DSZ, ENCFF002DTA, ENCFF018NEO, ENCFF897PBA 2554708926 ENCODE Processing Pipeline f9a6efbdd2db4cd91a67cd6d9539c0b2 https://www.encodeproject.org/files/ENCFF233TMX/@@download/ENCFF233TMX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF143SJI bam unfiltered alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTI, ENCFF018NEO 1882940021 ENCODE Processing Pipeline 393b9b38e8a5676404b4b1831597e2ec https://www.encodeproject.org/files/ENCFF143SJI/@@download/ENCFF143SJI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF161BYI bam alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTI, ENCFF018NEO 1178293484 ENCODE Processing Pipeline 0c2612c02a6606bab18fab3a38416541 https://www.encodeproject.org/files/ENCFF161BYI/@@download/ENCFF161BYI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF032PSJ bam alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DSZ, ENCFF002DTA, ENCFF018NEO, ENCFF897PBA 1098695715 ENCODE Processing Pipeline 88c78956258e0856afb57a3ca37711d1 https://www.encodeproject.org/files/ENCFF032PSJ/@@download/ENCFF032PSJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF414HXT bed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF161BYI, ENCFF631YQS, ENCFF658BBR 474021 ENCODE Processing Pipeline 4bbf81383b16cd7ad4d330a773fcdd94 https://www.encodeproject.org/files/ENCFF414HXT/@@download/ENCFF414HXT.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF485EZC bed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF032PSJ, ENCFF631YQS, ENCFF658BBR 2572632 ENCODE Processing Pipeline 4b461501be5cef57d1fa8dc9b272a4a2 https://www.encodeproject.org/files/ENCFF485EZC/@@download/ENCFF485EZC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF241OHG bed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF032PSJ, ENCFF161BYI, ENCFF631YQS, ENCFF658BBR 815823 ENCODE Processing Pipeline 88c1a88e49f8f6dae9297c1172a04a1b https://www.encodeproject.org/files/ENCFF241OHG/@@download/ENCFF241OHG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF287NDW bigBed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF414HXT 1174524 ENCODE Processing Pipeline 13696b4c2dd380b286d1ca18a120684a https://www.encodeproject.org/files/ENCFF287NDW/@@download/ENCFF287NDW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF822KBW bigBed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF485EZC 4801137 ENCODE Processing Pipeline c3202591123a35029243652b789c3c79 https://www.encodeproject.org/files/ENCFF822KBW/@@download/ENCFF822KBW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF766YIT bigBed narrowPeak peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF241OHG 1661226 ENCODE Processing Pipeline f6a3f4de6b3be1f30a17e5e4acceb5e8 https://www.encodeproject.org/files/ENCFF766YIT/@@download/ENCFF766YIT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF165JAN bigWig signal p-value ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF161BYI, ENCFF631YQS, ENCFF658BBR 500742733 ENCODE Processing Pipeline 8b1ea4ee60e28eb3f8cad7166471fd79 https://www.encodeproject.org/files/ENCFF165JAN/@@download/ENCFF165JAN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF858RAP bigWig signal p-value ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF032PSJ, ENCFF631YQS, ENCFF658BBR 435487279 ENCODE Processing Pipeline 5b4e99fff4f24fd6e967044ef7c9831e https://www.encodeproject.org/files/ENCFF858RAP/@@download/ENCFF858RAP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF630EWF bigWig signal p-value ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF032PSJ, ENCFF161BYI, ENCFF631YQS, ENCFF658BBR 494823675 ENCODE Processing Pipeline 913e04aa83524eebe2c49c2001aea549 https://www.encodeproject.org/files/ENCFF630EWF/@@download/ENCFF630EWF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF913NVF bigWig fold change over control ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF161BYI, ENCFF631YQS, ENCFF658BBR 502310702 ENCODE Processing Pipeline 7cb35dec8071e56a2f9ddaf24075f645 https://www.encodeproject.org/files/ENCFF913NVF/@@download/ENCFF913NVF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF245GSD bigWig fold change over control ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF032PSJ, ENCFF631YQS, ENCFF658BBR 457537288 ENCODE Processing Pipeline 028ee4b4c2f7e1340c5babb1b74228cf https://www.encodeproject.org/files/ENCFF245GSD/@@download/ENCFF245GSD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF985XJA bigWig fold change over control ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF032PSJ, ENCFF161BYI, ENCFF631YQS, ENCFF658BBR 792468802 ENCODE Processing Pipeline c1758cbd84542eaa42fbcef351fdaa66 https://www.encodeproject.org/files/ENCFF985XJA/@@download/ENCFF985XJA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF524NCS bed narrowPeak replicated peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF241OHG, ENCFF414HXT, ENCFF485EZC 572753 ENCODE Processing Pipeline 99e01e00520084af6b34e75b984c7bca https://www.encodeproject.org/files/ENCFF524NCS/@@download/ENCFF524NCS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF054NLT bigBed narrowPeak replicated peaks ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF524NCS 1133721 ENCODE Processing Pipeline 18555fa0380f256e816f391c14cc2db5 https://www.encodeproject.org/files/ENCFF054NLT/@@download/ENCFF054NLT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF491IVJ fastq reads ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1894239095 Bing Ren, UCSD 6d999114992f12ebd2898b1577b80284 SRA:SRR3651437 https://www.encodeproject.org/files/ENCFF491IVJ/@@download/ENCFF491IVJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXQ/ released low read length control insufficient read depth ENCFF101MJS fastq reads ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1896519670 Bing Ren, UCSD 2e77d5cb28809ee24a4d24489504281b SRA:SRR3651436 https://www.encodeproject.org/files/ENCFF101MJS/@@download/ENCFF101MJS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXP/ released low read length control insufficient read depth ENCFF282TAY bam alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF101MJS, ENCFF806TVZ 954027805 ENCODE Processing Pipeline 77ee5c2e8b3da277323add25d26b4ce3 https://www.encodeproject.org/files/ENCFF282TAY/@@download/ENCFF282TAY.bam mm10-minimal archived low read length control insufficient read depth ENCFF374VAX bam alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF491IVJ, ENCFF806TVZ 980435174 ENCODE Processing Pipeline 406eaf91a469d17eaf29ed2988216c24 https://www.encodeproject.org/files/ENCFF374VAX/@@download/ENCFF374VAX.bam mm10-minimal archived low read length control insufficient read depth ENCFF393HKP bigBed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF853IPZ 1742068 ENCODE Processing Pipeline c5f1e222148c6f298ae129fb630aaa67 https://www.encodeproject.org/files/ENCFF393HKP/@@download/ENCFF393HKP.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF853IPZ bed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF126TZS, ENCFF282TAY, ENCFF374VAX, ENCFF731DCA 746143 ENCODE Processing Pipeline 00dd83f60dece38f348981e5f9eba806 https://www.encodeproject.org/files/ENCFF853IPZ/@@download/ENCFF853IPZ.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF492VLK bed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF126TZS, ENCFF282TAY, ENCFF731DCA 1243174 ENCODE Processing Pipeline 9c2e908e853ddd21ac332e297345cc1a https://www.encodeproject.org/files/ENCFF492VLK/@@download/ENCFF492VLK.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF061DMA bigBed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF967JJL 2748876 ENCODE Processing Pipeline 7bf8fcf7e71cf62e4d424062f6182685 https://www.encodeproject.org/files/ENCFF061DMA/@@download/ENCFF061DMA.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF967JJL bed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF126TZS, ENCFF374VAX, ENCFF731DCA 1286975 ENCODE Processing Pipeline daee149245b25485497550e0b9e69570 https://www.encodeproject.org/files/ENCFF967JJL/@@download/ENCFF967JJL.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF442NEN bigBed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF492VLK 2676924 ENCODE Processing Pipeline 126be67012ab7a8964c969ac59b7bcfc https://www.encodeproject.org/files/ENCFF442NEN/@@download/ENCFF442NEN.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF395MRX bigWig signal p-value ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF126TZS, ENCFF282TAY, ENCFF731DCA 469144941 ENCODE Processing Pipeline c2cad9c60391fa6d7981777e82e90481 https://www.encodeproject.org/files/ENCFF395MRX/@@download/ENCFF395MRX.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF063UVQ bigWig signal p-value ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF126TZS, ENCFF282TAY, ENCFF374VAX, ENCFF731DCA 535700973 ENCODE Processing Pipeline fd4afdee66df88960abbb86285a7c120 https://www.encodeproject.org/files/ENCFF063UVQ/@@download/ENCFF063UVQ.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF852ZKV bigWig fold change over control ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF126TZS, ENCFF282TAY, ENCFF731DCA 454112316 ENCODE Processing Pipeline d637036013ba46a3c49b4de8a82a281b https://www.encodeproject.org/files/ENCFF852ZKV/@@download/ENCFF852ZKV.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF533CLU bigWig fold change over control ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF126TZS, ENCFF282TAY, ENCFF374VAX, ENCFF731DCA 737966208 ENCODE Processing Pipeline b6611e02f780a8a5180029deb2cc7d17 https://www.encodeproject.org/files/ENCFF533CLU/@@download/ENCFF533CLU.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF780IZD bigWig signal p-value ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF126TZS, ENCFF374VAX, ENCFF731DCA 464225295 ENCODE Processing Pipeline 6f7c6d7f974f723279703c31a171d162 https://www.encodeproject.org/files/ENCFF780IZD/@@download/ENCFF780IZD.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF352HWU bigWig fold change over control ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF126TZS, ENCFF374VAX, ENCFF731DCA 468931046 ENCODE Processing Pipeline e03b4aa4dc660b8d77b644aa64f8d314 https://www.encodeproject.org/files/ENCFF352HWU/@@download/ENCFF352HWU.bigWig mm10-minimal archived low read length control insufficient read depth ENCFF566UKN bed narrowPeak replicated peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF492VLK, ENCFF853IPZ, ENCFF967JJL 683761 ENCODE Processing Pipeline 8b9a7e55d818350511c080305b571ad9 https://www.encodeproject.org/files/ENCFF566UKN/@@download/ENCFF566UKN.bed.gz mm10-minimal archived low read length control insufficient read depth ENCFF651HEX bigBed narrowPeak replicated peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF566UKN 1433767 ENCODE Processing Pipeline c7288bd026cd5d7d933ea28cc9da3270 https://www.encodeproject.org/files/ENCFF651HEX/@@download/ENCFF651HEX.bigBed mm10-minimal archived low read length control insufficient read depth ENCFF142WME bam unfiltered alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF491IVJ 2404990730 ENCODE Processing Pipeline 5d09fa7c94587a68deaec5803e83bebc https://www.encodeproject.org/files/ENCFF142WME/@@download/ENCFF142WME.bam mm10 released low read length control insufficient read depth ENCFF816VRG bam unfiltered alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF101MJS 2406499678 ENCODE Processing Pipeline 7a1db58555f0aad7ac789fb6be52da64 https://www.encodeproject.org/files/ENCFF816VRG/@@download/ENCFF816VRG.bam mm10 released low read length control insufficient read depth ENCFF086VAQ bam alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF491IVJ 979888946 ENCODE Processing Pipeline 194ad3774c6d9b82e27d2ab96a56dd59 https://www.encodeproject.org/files/ENCFF086VAQ/@@download/ENCFF086VAQ.bam mm10 released low read length control insufficient read depth ENCFF506ZWN bam alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF101MJS 953432161 ENCODE Processing Pipeline a66f81ff44157169b5e868038ba66c6e https://www.encodeproject.org/files/ENCFF506ZWN/@@download/ENCFF506ZWN.bam mm10 released low read length control insufficient read depth ENCFF320EIR bed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF086VAQ, ENCFF276TCT 302440 ENCODE Processing Pipeline f0b1034902670789c7ab5a28f548991f https://www.encodeproject.org/files/ENCFF320EIR/@@download/ENCFF320EIR.bed.gz mm10 released low read length control insufficient read depth ENCFF335MQH bed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF086VAQ, ENCFF276TCT, ENCFF461JUO, ENCFF506ZWN 815616 ENCODE Processing Pipeline 5e53a9e78b24767d3d4edb64030fce52 https://www.encodeproject.org/files/ENCFF335MQH/@@download/ENCFF335MQH.bed.gz mm10 released low read length control insufficient read depth ENCFF335JLQ bed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF506ZWN 1242494 ENCODE Processing Pipeline 1da852eca51dbae37fe3b00d2d94815e https://www.encodeproject.org/files/ENCFF335JLQ/@@download/ENCFF335JLQ.bed.gz mm10 released low read length control insufficient read depth ENCFF285MDU bigBed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF335JLQ 2681116 ENCODE Processing Pipeline 0be58f283b23fb71c8c563a747a8f12f https://www.encodeproject.org/files/ENCFF285MDU/@@download/ENCFF285MDU.bigBed mm10 released low read length control insufficient read depth ENCFF887DHL bigBed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF335MQH 1862743 ENCODE Processing Pipeline 16a129c7ab486e28684ae0725e619160 https://www.encodeproject.org/files/ENCFF887DHL/@@download/ENCFF887DHL.bigBed mm10 released low read length control insufficient read depth ENCFF124DQU bigBed narrowPeak peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF320EIR 666404 ENCODE Processing Pipeline 31aedd034472a3b37763b3700ee0d053 https://www.encodeproject.org/files/ENCFF124DQU/@@download/ENCFF124DQU.bigBed mm10 released low read length control insufficient read depth ENCFF172TCT bigWig signal p-value ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF506ZWN 397671390 ENCODE Processing Pipeline 6def8bb08bf58d5e9a4abe257b3b7c02 https://www.encodeproject.org/files/ENCFF172TCT/@@download/ENCFF172TCT.bigWig mm10 released low read length control insufficient read depth ENCFF484IUP bigWig signal p-value ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF086VAQ, ENCFF276TCT 254230616 ENCODE Processing Pipeline ed080e2cc59760aee5a7d53b68781228 https://www.encodeproject.org/files/ENCFF484IUP/@@download/ENCFF484IUP.bigWig mm10 released low read length control insufficient read depth ENCFF929IDS bigWig signal p-value ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF086VAQ, ENCFF276TCT, ENCFF461JUO, ENCFF506ZWN 543891449 ENCODE Processing Pipeline ef87ca12fe1ae91cbf6574e7fd1c9baf https://www.encodeproject.org/files/ENCFF929IDS/@@download/ENCFF929IDS.bigWig mm10 released low read length control insufficient read depth ENCFF534MGG bigWig fold change over control ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF276TCT, ENCFF461JUO, ENCFF506ZWN 455119107 ENCODE Processing Pipeline 4eccc096b467a6937c1ff94e9e6e107e https://www.encodeproject.org/files/ENCFF534MGG/@@download/ENCFF534MGG.bigWig mm10 released low read length control insufficient read depth ENCFF325JXS bigWig fold change over control ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF086VAQ, ENCFF276TCT 357668304 ENCODE Processing Pipeline 98e326faf22339eaa975f501c9c2999e https://www.encodeproject.org/files/ENCFF325JXS/@@download/ENCFF325JXS.bigWig mm10 released low read length control insufficient read depth ENCFF637DCW bigWig fold change over control ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF086VAQ, ENCFF276TCT, ENCFF461JUO, ENCFF506ZWN 748408719 ENCODE Processing Pipeline e305d9747d9a11178deae979b92a735e https://www.encodeproject.org/files/ENCFF637DCW/@@download/ENCFF637DCW.bigWig mm10 released low read length control insufficient read depth ENCFF801DMR bed narrowPeak replicated peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF320EIR, ENCFF335JLQ, ENCFF335MQH 618782 ENCODE Processing Pipeline 9c0d15a7bb27cbe6dc1c5ec0d6984b10 https://www.encodeproject.org/files/ENCFF801DMR/@@download/ENCFF801DMR.bed.gz mm10 released low read length control insufficient read depth ENCFF296AMX bigBed narrowPeak replicated peaks ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF801DMR 1307991 ENCODE Processing Pipeline b9711980a8c597b0783d9a47a5c59043 https://www.encodeproject.org/files/ENCFF296AMX/@@download/ENCFF296AMX.bigBed mm10 released low read length control insufficient read depth ENCFF861WQV fastq reads ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3399005120 Bing Ren, UCSD 5dc2e81c18a4cb5e675e8f577cad76eb SRA:SRR3651296 https://www.encodeproject.org/files/ENCFF861WQV/@@download/ENCFF861WQV.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released inconsistent platforms ENCFF566NFW fastq reads ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3604513791 Bing Ren, UCSD a8ca7a5415ff2fac3896817fa84b1ac1 SRA:SRR3651295 https://www.encodeproject.org/files/ENCFF566NFW/@@download/ENCFF566NFW.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released inconsistent platforms ENCFF793UXE bam alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF861WQV 2958452013 ENCODE Processing Pipeline ee18cf4cad7611c7231de368d3e3d536 https://www.encodeproject.org/files/ENCFF793UXE/@@download/ENCFF793UXE.bam mm10-minimal archived inconsistent platforms ENCFF110TZB bam alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF566NFW, ENCFF806TVZ 3138213391 ENCODE Processing Pipeline b916b7c2b0a8cc2271c59d51d90c22a3 https://www.encodeproject.org/files/ENCFF110TZB/@@download/ENCFF110TZB.bam mm10-minimal archived inconsistent platforms ENCFF842FQG bed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF110TZB, ENCFF245YVK, ENCFF582LOU 2642763 ENCODE Processing Pipeline 111075c17a80ca4248877f6d5497e203 https://www.encodeproject.org/files/ENCFF842FQG/@@download/ENCFF842FQG.bed.gz mm10-minimal archived inconsistent platforms ENCFF764UFY bed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF110TZB, ENCFF245YVK, ENCFF582LOU, ENCFF793UXE 2594168 ENCODE Processing Pipeline 0dce0ac81dc5c724d1212399c79f8c51 https://www.encodeproject.org/files/ENCFF764UFY/@@download/ENCFF764UFY.bed.gz mm10-minimal archived inconsistent platforms ENCFF752WEK bigBed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF842FQG 5722299 ENCODE Processing Pipeline 4198d8ebb6ea6b1d69d08f99f971a9bd https://www.encodeproject.org/files/ENCFF752WEK/@@download/ENCFF752WEK.bigBed mm10-minimal archived inconsistent platforms ENCFF067TGO bed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF582LOU, ENCFF793UXE 2701778 ENCODE Processing Pipeline b7fdb2753386538c0bb77dc41d455a54 https://www.encodeproject.org/files/ENCFF067TGO/@@download/ENCFF067TGO.bed.gz mm10-minimal archived inconsistent platforms ENCFF566UXO bigBed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF067TGO 5799482 ENCODE Processing Pipeline 474e141695e8a1127ab4ce79a73d368f https://www.encodeproject.org/files/ENCFF566UXO/@@download/ENCFF566UXO.bigBed mm10-minimal archived inconsistent platforms ENCFF933WHV bigBed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF764UFY 5485181 ENCODE Processing Pipeline c44565ecaee4d9f7d0f005e873cc19ae https://www.encodeproject.org/files/ENCFF933WHV/@@download/ENCFF933WHV.bigBed mm10-minimal archived inconsistent platforms ENCFF504SMJ bigWig signal p-value ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF110TZB, ENCFF245YVK, ENCFF582LOU 1093315921 ENCODE Processing Pipeline 923fe56bbb4778d00f8d4fe198039050 https://www.encodeproject.org/files/ENCFF504SMJ/@@download/ENCFF504SMJ.bigWig mm10-minimal archived inconsistent platforms ENCFF278NRF bigWig signal p-value ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF582LOU, ENCFF793UXE 865632621 ENCODE Processing Pipeline 22e5abd1994ae7b28071ac9de1d850ed https://www.encodeproject.org/files/ENCFF278NRF/@@download/ENCFF278NRF.bigWig mm10-minimal archived inconsistent platforms ENCFF017MPK bigWig signal p-value ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF110TZB, ENCFF245YVK, ENCFF582LOU, ENCFF793UXE 1376529677 ENCODE Processing Pipeline c9f408318e4e2dcca923d73bfa4a163a https://www.encodeproject.org/files/ENCFF017MPK/@@download/ENCFF017MPK.bigWig mm10-minimal archived inconsistent platforms ENCFF736JPF bigWig fold change over control ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF110TZB, ENCFF245YVK, ENCFF582LOU 1193546950 ENCODE Processing Pipeline 6604437eeca8f05c598e4983827307ec https://www.encodeproject.org/files/ENCFF736JPF/@@download/ENCFF736JPF.bigWig mm10-minimal archived inconsistent platforms ENCFF971XAZ bigWig fold change over control ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF245YVK, ENCFF582LOU, ENCFF793UXE 1159259305 ENCODE Processing Pipeline cde1fb9681bee1de34a0099108837c8c https://www.encodeproject.org/files/ENCFF971XAZ/@@download/ENCFF971XAZ.bigWig mm10-minimal archived inconsistent platforms ENCFF457OLC bigWig fold change over control ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF110TZB, ENCFF245YVK, ENCFF582LOU, ENCFF793UXE 1627272003 ENCODE Processing Pipeline bcc39c695dacd5aca83c3f048078c460 https://www.encodeproject.org/files/ENCFF457OLC/@@download/ENCFF457OLC.bigWig mm10-minimal archived inconsistent platforms ENCFF806LNX bigBed narrowPeak replicated peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF103IGO 3637458 ENCODE Processing Pipeline 47f4561df700743b9d4214c2117a8445 https://www.encodeproject.org/files/ENCFF806LNX/@@download/ENCFF806LNX.bigBed mm10-minimal archived inconsistent platforms ENCFF103IGO bed narrowPeak replicated peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF067TGO, ENCFF764UFY, ENCFF842FQG 2056278 ENCODE Processing Pipeline 8bb6778625954a92e83defe73b80ec27 https://www.encodeproject.org/files/ENCFF103IGO/@@download/ENCFF103IGO.bed.gz mm10-minimal archived inconsistent platforms ENCFF349SQG bam unfiltered alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF566NFW 4303254259 ENCODE Processing Pipeline 928a67f44136e22a1ba27e4b7d399013 https://www.encodeproject.org/files/ENCFF349SQG/@@download/ENCFF349SQG.bam mm10 released inconsistent platforms ENCFF164IGA bam unfiltered alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF861WQV 4059860365 ENCODE Processing Pipeline 1689cc7fdb23718df49436431fd6a10b https://www.encodeproject.org/files/ENCFF164IGA/@@download/ENCFF164IGA.bam mm10 released inconsistent platforms ENCFF990ZQH bam alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF566NFW 3137495852 ENCODE Processing Pipeline 54257437823136acec4f92de81fed3c4 https://www.encodeproject.org/files/ENCFF990ZQH/@@download/ENCFF990ZQH.bam mm10 released inconsistent platforms ENCFF670RVW bam alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF861WQV 2957780071 ENCODE Processing Pipeline bf087a12b300453957b8f64f3c6fb494 https://www.encodeproject.org/files/ENCFF670RVW/@@download/ENCFF670RVW.bam mm10 released inconsistent platforms ENCFF397JLP bed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF990ZQH 2409087 ENCODE Processing Pipeline fb9396d69e9f23efaa80fc5338af00ea https://www.encodeproject.org/files/ENCFF397JLP/@@download/ENCFF397JLP.bed.gz mm10 released inconsistent platforms ENCFF480BRZ bed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF389YBT, ENCFF670RVW, ENCFF990ZQH 2734708 ENCODE Processing Pipeline 372758a483fa7ca903e07a2250226c05 https://www.encodeproject.org/files/ENCFF480BRZ/@@download/ENCFF480BRZ.bed.gz mm10 released inconsistent platforms ENCFF492JEI bed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF670RVW 2384846 ENCODE Processing Pipeline f97f68ae7266c715daf5afbc2038adda https://www.encodeproject.org/files/ENCFF492JEI/@@download/ENCFF492JEI.bed.gz mm10 released inconsistent platforms ENCFF131XNO bigBed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF397JLP 5237032 ENCODE Processing Pipeline 2cc81146e5b949934651cdf32eceffed https://www.encodeproject.org/files/ENCFF131XNO/@@download/ENCFF131XNO.bigBed mm10 released inconsistent platforms ENCFF065AES bigBed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF492JEI 5097888 ENCODE Processing Pipeline 25f511840066bd2953c65e41a6e7d06e https://www.encodeproject.org/files/ENCFF065AES/@@download/ENCFF065AES.bigBed mm10 released inconsistent platforms ENCFF367HBR bigBed narrowPeak peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF480BRZ 7405030 ENCODE Processing Pipeline 32e859e5ae56acf36da51b8d8b68a44e https://www.encodeproject.org/files/ENCFF367HBR/@@download/ENCFF367HBR.bigBed mm10 released inconsistent platforms ENCFF220ZVV bigWig signal p-value ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF990ZQH 967324126 ENCODE Processing Pipeline 93e8dda8b9ac77263dfd9f702981d3dd https://www.encodeproject.org/files/ENCFF220ZVV/@@download/ENCFF220ZVV.bigWig mm10 released inconsistent platforms ENCFF058HIZ bigWig signal p-value ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF670RVW 892695721 ENCODE Processing Pipeline 046675cdeb5845cc0a1fa791889f32bd https://www.encodeproject.org/files/ENCFF058HIZ/@@download/ENCFF058HIZ.bigWig mm10 released inconsistent platforms ENCFF205QED bigWig signal p-value ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF389YBT, ENCFF670RVW, ENCFF990ZQH 1562817345 ENCODE Processing Pipeline 26576a93c518015513f79bfd157bfa3b https://www.encodeproject.org/files/ENCFF205QED/@@download/ENCFF205QED.bigWig mm10 released inconsistent platforms ENCFF615CDZ bigWig fold change over control ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF245OIS, ENCFF389YBT, ENCFF990ZQH 1182800103 ENCODE Processing Pipeline 06370485eafe15e5db30f45a1c2dd1e9 https://www.encodeproject.org/files/ENCFF615CDZ/@@download/ENCFF615CDZ.bigWig mm10 released inconsistent platforms ENCFF607HDW bigWig fold change over control ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF389YBT, ENCFF670RVW 900607628 ENCODE Processing Pipeline 50baee67cf9a0c81015ca9395990fafd https://www.encodeproject.org/files/ENCFF607HDW/@@download/ENCFF607HDW.bigWig mm10 released inconsistent platforms ENCFF887SQZ bigWig fold change over control ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF245OIS, ENCFF389YBT, ENCFF670RVW, ENCFF990ZQH 1677890613 ENCODE Processing Pipeline 829a57585e54b9d155efa33147c26b27 https://www.encodeproject.org/files/ENCFF887SQZ/@@download/ENCFF887SQZ.bigWig mm10 released inconsistent platforms ENCFF092NWD bed narrowPeak replicated peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF397JLP, ENCFF480BRZ, ENCFF492JEI 2078431 ENCODE Processing Pipeline b2bfa0f5f53191beec5365b70b47b1b1 https://www.encodeproject.org/files/ENCFF092NWD/@@download/ENCFF092NWD.bed.gz mm10 released inconsistent platforms ENCFF168LSS bigBed narrowPeak replicated peaks ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF092NWD 4648719 ENCODE Processing Pipeline e1bf3c4cbcaccabddb5d028cd617ce09 https://www.encodeproject.org/files/ENCFF168LSS/@@download/ENCFF168LSS.bigBed mm10 released inconsistent platforms ENCFF031RLD fastq reads ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 448677423 Bing Ren, UCSD 787ae65a5c77b834b7de41d37f4458f6 SRA:SRR3652050 https://www.encodeproject.org/files/ENCFF031RLD/@@download/ENCFF031RLD.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF015ETA fastq reads ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 434559061 Bing Ren, UCSD fe1f4f3b21c3cf9c8e3994329d909e03 SRA:SRR3652048 https://www.encodeproject.org/files/ENCFF015ETA/@@download/ENCFF015ETA.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF419PTI fastq reads ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1789394983 Bing Ren, UCSD 89c432b08d4f0e6e7e9b7308760505c5 SRA:SRR3652051 https://www.encodeproject.org/files/ENCFF419PTI/@@download/ENCFF419PTI.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF695ITS fastq reads ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1891151247 Bing Ren, UCSD 8eb3a3172ded9d4ef81601cab2232eb5 SRA:SRR3652049 https://www.encodeproject.org/files/ENCFF695ITS/@@download/ENCFF695ITS.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF233LRZ bam alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF015ETA, ENCFF695ITS, ENCFF806TVZ 2315701757 ENCODE Processing Pipeline a2229138032367ec6216cac6a953b2df https://www.encodeproject.org/files/ENCFF233LRZ/@@download/ENCFF233LRZ.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF595MDP bam alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF031RLD, ENCFF419PTI, ENCFF806TVZ 2255517534 ENCODE Processing Pipeline 10cabaa4c012f754c5fb75b1a151fa26 https://www.encodeproject.org/files/ENCFF595MDP/@@download/ENCFF595MDP.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF131VYV bam unfiltered alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF015ETA, ENCFF018NEO, ENCFF695ITS 3205597747 ENCODE Processing Pipeline cc641e3a2a555c77999148953d47f067 https://www.encodeproject.org/files/ENCFF131VYV/@@download/ENCFF131VYV.bam mm10 released sequencing runs labeled as technical replicates ENCFF350XFJ bam unfiltered alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF018NEO, ENCFF031RLD, ENCFF419PTI 3097284945 ENCODE Processing Pipeline 0685dd70fdcd6b8ba104cd15282e794e https://www.encodeproject.org/files/ENCFF350XFJ/@@download/ENCFF350XFJ.bam mm10 released sequencing runs labeled as technical replicates ENCFF781DUP bam alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF015ETA, ENCFF018NEO, ENCFF695ITS 2315156865 ENCODE Processing Pipeline 36bd590545316c4d07e44de7a866c322 https://www.encodeproject.org/files/ENCFF781DUP/@@download/ENCFF781DUP.bam mm10 released sequencing runs labeled as technical replicates ENCFF548IIV bam alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF031RLD, ENCFF419PTI 2255018175 ENCODE Processing Pipeline 47d9947365d7ce806820d1bd3eaa27a3 https://www.encodeproject.org/files/ENCFF548IIV/@@download/ENCFF548IIV.bam mm10 released sequencing runs labeled as technical replicates ENCFF002BXP fastq reads ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 885978621 Bing Ren, UCSD 7c092de44b32a999cdc81f6284dd77ff SRA:SRR3652780 https://www.encodeproject.org/files/ENCFF002BXP/@@download/ENCFF002BXP.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF002BXQ fastq reads ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 755934402 Bing Ren, UCSD aaa8d71f6a1be52ef2983e1c13d9d27e SRA:SRR3652779 https://www.encodeproject.org/files/ENCFF002BXQ/@@download/ENCFF002BXQ.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF639PPY bam unfiltered alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXP, ENCFF806TVZ 1133395985 ENCODE Processing Pipeline fd7944db4ecbccf997818658c999d5c9 https://www.encodeproject.org/files/ENCFF639PPY/@@download/ENCFF639PPY.bam mm10-minimal archived low read length, low read depth ENCFF924JSD bam unfiltered alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXQ, ENCFF806TVZ 969665311 ENCODE Processing Pipeline 9cb0f92bee5ac5bd71c8d61faadeb79c https://www.encodeproject.org/files/ENCFF924JSD/@@download/ENCFF924JSD.bam mm10-minimal archived low read length, low read depth ENCFF126TZS bam alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXQ, ENCFF806TVZ 576325756 ENCODE Processing Pipeline a55e8a4a93a3a38d1c8f0e4d79468ad9 https://www.encodeproject.org/files/ENCFF126TZS/@@download/ENCFF126TZS.bam mm10-minimal archived low read length, low read depth ENCFF731DCA bam alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXP, ENCFF806TVZ 668417351 ENCODE Processing Pipeline f21d72f9189f99e83bfa7dee62d8f26b https://www.encodeproject.org/files/ENCFF731DCA/@@download/ENCFF731DCA.bam mm10-minimal archived low read length, low read depth ENCFF898WUB bam unfiltered alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXP, ENCFF018NEO 1135082853 ENCODE Processing Pipeline dca92f98b4928d38733d23fc17004a76 https://www.encodeproject.org/files/ENCFF898WUB/@@download/ENCFF898WUB.bam mm10 released low read length, low read depth ENCFF126KIU bam unfiltered alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXQ, ENCFF018NEO 971225836 ENCODE Processing Pipeline 8790e340eb5c26f09466ede73c245b17 https://www.encodeproject.org/files/ENCFF126KIU/@@download/ENCFF126KIU.bam mm10 released low read length, low read depth ENCFF461JUO bam alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXP, ENCFF018NEO 668155923 ENCODE Processing Pipeline 2023b38ac3f7d116beab9b557ab072a2 https://www.encodeproject.org/files/ENCFF461JUO/@@download/ENCFF461JUO.bam mm10 released low read length, low read depth ENCFF276TCT bam alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXQ, ENCFF018NEO 576099097 ENCODE Processing Pipeline 3598924a9611d873f04b5aee3925aa00 https://www.encodeproject.org/files/ENCFF276TCT/@@download/ENCFF276TCT.bam mm10 released low read length, low read depth ENCFF009WNY fastq reads ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 50 single-ended 1731515055 Bing Ren, UCSD 7aff1d1256378ce179b69eb132926cde SRA:SRR3651220 https://www.encodeproject.org/files/ENCFF009WNY/@@download/ENCFF009WNY.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF275UAH fastq reads ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 50 single-ended 1972494235 Bing Ren, UCSD d536afdb72cf86fc6eaf8182c91a5953 SRA:SRR3651219 https://www.encodeproject.org/files/ENCFF275UAH/@@download/ENCFF275UAH.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF017YUR fastq reads ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 2 50 single-ended 542417517 Bing Ren, UCSD 108370929b64e70ff00e177f7b097aa5 SRA:SRR3651221 https://www.encodeproject.org/files/ENCFF017YUR/@@download/ENCFF017YUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF236BMF bam alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF009WNY, ENCFF017YUR, ENCFF806TVZ 1480335633 ENCODE Processing Pipeline d4f3b45131e0f1afc7da4febc8b0122e https://www.encodeproject.org/files/ENCFF236BMF/@@download/ENCFF236BMF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF250WDZ bam alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF275UAH, ENCFF806TVZ 1231604308 ENCODE Processing Pipeline 7324d40e1dc00123b64d8b18cd15599d https://www.encodeproject.org/files/ENCFF250WDZ/@@download/ENCFF250WDZ.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF911HYO bed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF236BMF, ENCFF263OMS, ENCFF667WJC 362634 ENCODE Processing Pipeline 02d508e12ff55c2e11a5de013884ddaa https://www.encodeproject.org/files/ENCFF911HYO/@@download/ENCFF911HYO.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF118XDO bed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF236BMF, ENCFF250WDZ, ENCFF263OMS, ENCFF667WJC 416406 ENCODE Processing Pipeline 38761f87aae6238a49b0e4db9a0531e2 https://www.encodeproject.org/files/ENCFF118XDO/@@download/ENCFF118XDO.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF769DMA bigBed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF118XDO 828477 ENCODE Processing Pipeline 9203177f78666c7c58d49914a2ec6a35 https://www.encodeproject.org/files/ENCFF769DMA/@@download/ENCFF769DMA.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF938JRI bigWig signal p-value ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF236BMF, ENCFF263OMS, ENCFF667WJC 757877775 ENCODE Processing Pipeline e7c14454b24f99f7d0b3f34090c95874 https://www.encodeproject.org/files/ENCFF938JRI/@@download/ENCFF938JRI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF524BLV bed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF250WDZ, ENCFF263OMS, ENCFF667WJC 520977 ENCODE Processing Pipeline 8534b4812b02bc8e81bab76802d59fd4 https://www.encodeproject.org/files/ENCFF524BLV/@@download/ENCFF524BLV.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF510LDQ bigBed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF911HYO 780991 ENCODE Processing Pipeline 304b892f01877698c12cbfc349eb347b https://www.encodeproject.org/files/ENCFF510LDQ/@@download/ENCFF510LDQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF827QFA bigBed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF524BLV 1028306 ENCODE Processing Pipeline 821e7a3ccf20cfe7f6ebd45aa40a76ec https://www.encodeproject.org/files/ENCFF827QFA/@@download/ENCFF827QFA.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF582MHK bigWig signal p-value ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF250WDZ, ENCFF263OMS, ENCFF667WJC 767807805 ENCODE Processing Pipeline 919033b7975a70caa885411c186c997a https://www.encodeproject.org/files/ENCFF582MHK/@@download/ENCFF582MHK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF395LJZ bigWig signal p-value ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF236BMF, ENCFF250WDZ, ENCFF263OMS, ENCFF667WJC 901300866 ENCODE Processing Pipeline bcd6dd2cd1d8e8eacf7a096e0d2399fd https://www.encodeproject.org/files/ENCFF395LJZ/@@download/ENCFF395LJZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF793OAM bigWig fold change over control ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF236BMF, ENCFF263OMS, ENCFF667WJC 739902285 ENCODE Processing Pipeline c3babdf96cbe885f5ae9525a49104df3 https://www.encodeproject.org/files/ENCFF793OAM/@@download/ENCFF793OAM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF717EJV bed narrowPeak replicated peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF118XDO, ENCFF524BLV, ENCFF911HYO 99490 ENCODE Processing Pipeline ed3277cc827ccc2ee7c6664de7527c9b https://www.encodeproject.org/files/ENCFF717EJV/@@download/ENCFF717EJV.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF471ERR bigWig fold change over control ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF236BMF, ENCFF250WDZ, ENCFF263OMS, ENCFF667WJC 985343959 ENCODE Processing Pipeline 22b3bbe4cfe9b4c06f35f5939bc10e64 https://www.encodeproject.org/files/ENCFF471ERR/@@download/ENCFF471ERR.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF196FPU bigWig fold change over control ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF250WDZ, ENCFF263OMS, ENCFF667WJC 668829486 ENCODE Processing Pipeline 276a7885d9ad2ec5ea5539f40ce612ca https://www.encodeproject.org/files/ENCFF196FPU/@@download/ENCFF196FPU.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF229TWR bigBed narrowPeak replicated peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF717EJV 293954 ENCODE Processing Pipeline b1557e4d3c0d83bf7bb19853abc8fa6d https://www.encodeproject.org/files/ENCFF229TWR/@@download/ENCFF229TWR.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF022WND bam unfiltered alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF009WNY, ENCFF017YUR, ENCFF018NEO 2767418265 ENCODE Processing Pipeline 73627b60dce1de61f9ff582149a5b51c https://www.encodeproject.org/files/ENCFF022WND/@@download/ENCFF022WND.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF466APF bam unfiltered alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF275UAH 2406142330 ENCODE Processing Pipeline e26a6b7b07441910c957787ec83b841b https://www.encodeproject.org/files/ENCFF466APF/@@download/ENCFF466APF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF894UZN bam alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF009WNY, ENCFF017YUR, ENCFF018NEO 1479628992 ENCODE Processing Pipeline 5b9fad25b709ab0595713f82edfb6b03 https://www.encodeproject.org/files/ENCFF894UZN/@@download/ENCFF894UZN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF011YLZ bam alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF275UAH 1230936178 ENCODE Processing Pipeline 9a45a8e3417fb81e17e234216c5669e8 https://www.encodeproject.org/files/ENCFF011YLZ/@@download/ENCFF011YLZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF737HSB bed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF894UZN 419089 ENCODE Processing Pipeline d92ef9ecc62726022a8738316e91b2da https://www.encodeproject.org/files/ENCFF737HSB/@@download/ENCFF737HSB.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF787TXO bed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF011YLZ, ENCFF031OYA, ENCFF514GVM 553655 ENCODE Processing Pipeline 7fb93d9207e07f0a559e64d7410920fb https://www.encodeproject.org/files/ENCFF787TXO/@@download/ENCFF787TXO.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF125NIN bigBed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF370TDZ 1032603 ENCODE Processing Pipeline db30cf70b1b81895b2a08ddf165b6ec9 https://www.encodeproject.org/files/ENCFF125NIN/@@download/ENCFF125NIN.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF882ENT bigBed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF787TXO 1070236 ENCODE Processing Pipeline 8921b5c7dfb9856a5fc8d4698b37584b https://www.encodeproject.org/files/ENCFF882ENT/@@download/ENCFF882ENT.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF370TDZ bed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF011YLZ, ENCFF031OYA, ENCFF514GVM, ENCFF894UZN 409562 ENCODE Processing Pipeline d9283abc9c218d02f794c2e73830eeee https://www.encodeproject.org/files/ENCFF370TDZ/@@download/ENCFF370TDZ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF461NAK bigBed narrowPeak peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF737HSB 873986 ENCODE Processing Pipeline b071751931311e21d1499295da42cb84 https://www.encodeproject.org/files/ENCFF461NAK/@@download/ENCFF461NAK.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF473CWJ bigWig signal p-value ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF894UZN 757726336 ENCODE Processing Pipeline 9409d6d969bf1d34af2a5a396cc5e324 https://www.encodeproject.org/files/ENCFF473CWJ/@@download/ENCFF473CWJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF428WEO bigWig signal p-value ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF011YLZ, ENCFF031OYA, ENCFF514GVM 739418809 ENCODE Processing Pipeline 9bc6a2aba3b456725df1696437b19f49 https://www.encodeproject.org/files/ENCFF428WEO/@@download/ENCFF428WEO.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF286IYG bigWig fold change over control ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF031OYA, ENCFF514GVM, ENCFF894UZN 811049337 ENCODE Processing Pipeline a0bf3a15eace18f3d2f5e06b2465f03a https://www.encodeproject.org/files/ENCFF286IYG/@@download/ENCFF286IYG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF421NGY bigWig signal p-value ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF011YLZ, ENCFF031OYA, ENCFF514GVM, ENCFF894UZN 862929676 ENCODE Processing Pipeline 3b912f447f1dbacfff58152707940432 https://www.encodeproject.org/files/ENCFF421NGY/@@download/ENCFF421NGY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF687EWK bigWig fold change over control ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF011YLZ, ENCFF031OYA, ENCFF514GVM 759624685 ENCODE Processing Pipeline 68255f90325d22d89438676405d0659d https://www.encodeproject.org/files/ENCFF687EWK/@@download/ENCFF687EWK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF367TZB bigWig fold change over control ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF011YLZ, ENCFF031OYA, ENCFF514GVM, ENCFF894UZN 1080683561 ENCODE Processing Pipeline 46a90068108b199a554e7672f06f8513 https://www.encodeproject.org/files/ENCFF367TZB/@@download/ENCFF367TZB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF305SMO bed narrowPeak replicated peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF370TDZ, ENCFF737HSB, ENCFF787TXO 104955 ENCODE Processing Pipeline 27c2471274c96e6803767686eee2d67a https://www.encodeproject.org/files/ENCFF305SMO/@@download/ENCFF305SMO.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF151GDV bigBed narrowPeak replicated peaks ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF305SMO 307154 ENCODE Processing Pipeline 03a30ea09a3e464d2e2c0d496f49fed6 https://www.encodeproject.org/files/ENCFF151GDV/@@download/ENCFF151GDV.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF853NEA fastq reads ENCSR655KFC ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 1 50 single-ended 1394838234 Richard Myers, HAIB 68699ac0228204e3be6f147e2a60bdef SRA:SRR5111913 https://www.encodeproject.org/files/ENCFF853NEA/@@download/ENCFF853NEA.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF731TNW bam unfiltered alignments ENCSR655KFC ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 ENCFF018NEO, ENCFF853NEA 1534253247 ENCODE Processing Pipeline e412a48edff1844013cd3d99e38a804e https://www.encodeproject.org/files/ENCFF731TNW/@@download/ENCFF731TNW.bam mm10 released insufficient read depth for broad peaks control ENCFF174UCS bam alignments ENCSR655KFC ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF853NEA 1205096189 ENCODE Processing Pipeline 0e6e9324c9b4fce57bec207dc38d6721 https://www.encodeproject.org/files/ENCFF174UCS/@@download/ENCFF174UCS.bam mm10 released insufficient read depth for broad peaks control ENCFF001NVU bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NVW 386345948 Michael Snyder, Stanford 315d5a4e269fea40099daf4bf34eee90 https://www.encodeproject.org/files/ENCFF001NVU/@@download/ENCFF001NVU.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NVV bigBed narrowPeak peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJT 259139 Michael Snyder, Stanford dfc62a0c1fc9fc21b575bdcf44c88a0a https://www.encodeproject.org/files/ENCFF001NVV/@@download/ENCFF001NVV.bigBed mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NVW fastq reads ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 767689481 Michael Snyder, Stanford 1850b9b47da77d5a2576b86de2b11d12 https://www.encodeproject.org/files/ENCFF001NVW/@@download/ENCFF001NVW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NVY bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NVZ 446217082 Michael Snyder, Stanford 576d56f9591b2e4935ea846f2fdebb44 https://www.encodeproject.org/files/ENCFF001NVY/@@download/ENCFF001NVY.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NVZ fastq reads ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 799975072 Michael Snyder, Stanford 3c9048a96bbfd96dc326f01130147e4a https://www.encodeproject.org/files/ENCFF001NVZ/@@download/ENCFF001NVZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NWB bigWig signal ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NVU, ENCFF001NVY 405324426 Michael Snyder, Stanford 9a60f4d720c5b0f14d8165172f987b81 https://www.encodeproject.org/files/ENCFF001NWB/@@download/ENCFF001NWB.bigWig mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001YJT bed narrowPeak peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NVU, ENCFF001NVY 108313 Michael Snyder, Stanford b638415408803744dae44414db1b8583 https://www.encodeproject.org/files/ENCFF001YJT/@@download/ENCFF001YJT.bed.gz mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF554FDZ bam unfiltered alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NVW, ENCFF018NEO 852662830 ENCODE Processing Pipeline f01f45bb90468a4d38efbe326deb8b08 https://www.encodeproject.org/files/ENCFF554FDZ/@@download/ENCFF554FDZ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF605SCI bam unfiltered alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NVZ, ENCFF018NEO 879313284 ENCODE Processing Pipeline 5d0315ee72c52a1252dd00d220635075 https://www.encodeproject.org/files/ENCFF605SCI/@@download/ENCFF605SCI.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF842AGG bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NVW, ENCFF018NEO 557404609 ENCODE Processing Pipeline 082ee9c5e110298e08badecab65b9af5 https://www.encodeproject.org/files/ENCFF842AGG/@@download/ENCFF842AGG.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF694NOV bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NVZ, ENCFF018NEO 596562091 ENCODE Processing Pipeline 6e2d8f77d0036201f73c0c6faa7a5307 https://www.encodeproject.org/files/ENCFF694NOV/@@download/ENCFF694NOV.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF400WDO bigWig signal p-value ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF842AGG 304270045 ENCODE Processing Pipeline 14f5b92562dc337b408edd1883b0d713 https://www.encodeproject.org/files/ENCFF400WDO/@@download/ENCFF400WDO.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF256QWW bigWig signal p-value ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF694NOV 316660477 ENCODE Processing Pipeline a5c1f13dc92ceaba521ce2e02d5681ef https://www.encodeproject.org/files/ENCFF256QWW/@@download/ENCFF256QWW.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF403TUS bigWig signal p-value ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF694NOV, ENCFF842AGG 359084097 ENCODE Processing Pipeline 4428483ba2b6d804b83751171f9bac8d https://www.encodeproject.org/files/ENCFF403TUS/@@download/ENCFF403TUS.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF691PMV bed narrowPeak conservative idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF177BJJ, ENCFF520IHS, ENCFF547MET, ENCFF551YJH 352249 ENCODE Processing Pipeline dbff65fa9867919ce3117f6356b5cd1b https://www.encodeproject.org/files/ENCFF691PMV/@@download/ENCFF691PMV.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF516TXJ bigWig fold change over control ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF694NOV 285777325 ENCODE Processing Pipeline cc5768aa65817333d4e23cbe0664a351 https://www.encodeproject.org/files/ENCFF516TXJ/@@download/ENCFF516TXJ.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF844UNO bigBed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF520IHS 12798218 ENCODE Processing Pipeline e16363446300d95feccfd67e6288a26c https://www.encodeproject.org/files/ENCFF844UNO/@@download/ENCFF844UNO.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF956SFX bigWig fold change over control ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF842AGG 271513399 ENCODE Processing Pipeline 2ad692e41c88765194257fc0fd4c8f0a https://www.encodeproject.org/files/ENCFF956SFX/@@download/ENCFF956SFX.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF591TEI bigWig fold change over control ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF694NOV, ENCFF842AGG 474790975 ENCODE Processing Pipeline bcbec8dbd92881ef0ebe9bcd9336a418 https://www.encodeproject.org/files/ENCFF591TEI/@@download/ENCFF591TEI.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF551YJH bed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF694NOV, ENCFF842AGG 6129959 ENCODE Processing Pipeline 6ad257f5af0733a2e43981ac937153c0 https://www.encodeproject.org/files/ENCFF551YJH/@@download/ENCFF551YJH.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF652ELP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF691PMV 787512 ENCODE Processing Pipeline fff883aa04d0b97e0c59daed1c62b08f https://www.encodeproject.org/files/ENCFF652ELP/@@download/ENCFF652ELP.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF642MTJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF647MPR 840202 ENCODE Processing Pipeline c8fc9316543d7184e8af01bed020b70d https://www.encodeproject.org/files/ENCFF642MTJ/@@download/ENCFF642MTJ.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF358BAT bigBed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF177BJJ 12795027 ENCODE Processing Pipeline 71297f9f6905cd5d7216e185a1f4c5b4 https://www.encodeproject.org/files/ENCFF358BAT/@@download/ENCFF358BAT.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF482PXD bigBed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF551YJH 12981454 ENCODE Processing Pipeline 3a880b4800b2764194e096d50a0d6c3c https://www.encodeproject.org/files/ENCFF482PXD/@@download/ENCFF482PXD.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF520IHS bed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF842AGG 5472833 ENCODE Processing Pipeline 0ca2973cc45523acc952cfc473d2e604 https://www.encodeproject.org/files/ENCFF520IHS/@@download/ENCFF520IHS.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF177BJJ bed narrowPeak peaks and background as input for IDR ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF694NOV 5397147 ENCODE Processing Pipeline ad6e781e7153a5e268b6a41005c80b0b https://www.encodeproject.org/files/ENCFF177BJJ/@@download/ENCFF177BJJ.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF647MPR bed narrowPeak optimal idr thresholded peaks ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF177BJJ, ENCFF520IHS, ENCFF547MET, ENCFF551YJH 380295 ENCODE Processing Pipeline f125cafb194dd7d0f5b67a55ae32d588 https://www.encodeproject.org/files/ENCFF647MPR/@@download/ENCFF647MPR.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001IAU bigBed narrowPeak peaks ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUP 128570 Barbara Wold, Caltech 63efe3886d3403066863ad43e34f4f37 https://www.encodeproject.org/files/ENCFF001IAU/@@download/ENCFF001IAU.bigBed mm9 released insufficient read depth, control insufficient read depth ENCFF001IAV bigWig signal ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAW 152762113 Barbara Wold, Caltech a51facac7f911ec020fae4c8cbef83e2 https://www.encodeproject.org/files/ENCFF001IAV/@@download/ENCFF001IAV.bigWig mm9 released insufficient read depth, control insufficient read depth ENCFF001IAW bam alignments ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IBU 1347831368 Barbara Wold, Caltech e843725934bb8ca41e24b4d6afbc9c07 https://www.encodeproject.org/files/ENCFF001IAW/@@download/ENCFF001IAW.bam mm9 released insufficient read depth, control insufficient read depth ENCFF001IBU fastq reads ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 1304539781 Barbara Wold, Caltech a382695f9016cad608d80b980aad5018 https://www.encodeproject.org/files/ENCFF001IBU/@@download/ENCFF001IBU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released insufficient read depth, control insufficient read depth ENCFF001XUP bed narrowPeak peaks ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAW 36600 Barbara Wold, Caltech 97ecbd833845eb3f063a5ee2910581b3 https://www.encodeproject.org/files/ENCFF001XUP/@@download/ENCFF001XUP.bed.gz mm9 released insufficient read depth, control insufficient read depth ENCFF850EOW bam unfiltered alignments ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBU, ENCFF018NEO 1420042461 ENCODE Processing Pipeline 40bed12db917ce335f765d0ea7d08fd4 https://www.encodeproject.org/files/ENCFF850EOW/@@download/ENCFF850EOW.bam mm10 released insufficient read depth, control insufficient read depth ENCFF127OCQ bam alignments ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBU, ENCFF018NEO 1037924037 ENCODE Processing Pipeline 7ffd92e2fcb0d1e5eccf4dd032d359d6 https://www.encodeproject.org/files/ENCFF127OCQ/@@download/ENCFF127OCQ.bam mm10 released insufficient read depth, control insufficient read depth ENCFF287TNX bed narrowPeak peaks ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF127OCQ, ENCFF993HAY 2396611 ENCODE Processing Pipeline 9d7582ef9e83b1f471d830869047edbc https://www.encodeproject.org/files/ENCFF287TNX/@@download/ENCFF287TNX.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF541VCC bigBed narrowPeak peaks ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF287TNX 4596862 ENCODE Processing Pipeline 761db9bd5cd0b8399c70522c8eeff0d6 https://www.encodeproject.org/files/ENCFF541VCC/@@download/ENCFF541VCC.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF825QZH bigWig signal p-value ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF127OCQ, ENCFF993HAY 339193802 ENCODE Processing Pipeline 91034e3b0974ce69a9114ddf7b4c3d30 https://www.encodeproject.org/files/ENCFF825QZH/@@download/ENCFF825QZH.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF046UQY bigWig fold change over control ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF127OCQ, ENCFF993HAY 306061494 ENCODE Processing Pipeline c7316a3c3b0c1b3d7f9ee449dad79e7b https://www.encodeproject.org/files/ENCFF046UQY/@@download/ENCFF046UQY.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF404CTN bigBed narrowPeak stable peaks ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF244DWZ 2193856 ENCODE Processing Pipeline e0aaf3cbe25b183489ec103dd2fe4a74 https://www.encodeproject.org/files/ENCFF404CTN/@@download/ENCFF404CTN.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF244DWZ bed narrowPeak stable peaks ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF287TNX 1177150 ENCODE Processing Pipeline c6495bd2037b8574dc2947c0fd15f6b8 https://www.encodeproject.org/files/ENCFF244DWZ/@@download/ENCFF244DWZ.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF794KXJ fastq reads ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2465873728 Bing Ren, UCSD 27ea4177e17cee603740536955675cc8 SRA:SRR3651280 https://www.encodeproject.org/files/ENCFF794KXJ/@@download/ENCFF794KXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released mild to moderate bottlenecking, inconsistent platforms ENCFF749CTY fastq reads ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2198388549 Bing Ren, UCSD fe07cb025ac49b968a220c3f52fb16a9 SRA:SRR3651279 https://www.encodeproject.org/files/ENCFF749CTY/@@download/ENCFF749CTY.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released mild to moderate bottlenecking, inconsistent platforms ENCFF034CII bam alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF749CTY, ENCFF806TVZ 1843209409 ENCODE Processing Pipeline cc882221bc9dd1a12c0840f2e27e00da https://www.encodeproject.org/files/ENCFF034CII/@@download/ENCFF034CII.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF329NJZ bam alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF794KXJ, ENCFF806TVZ 1993538527 ENCODE Processing Pipeline b94b96025b64459ffd037b78ffc92038 https://www.encodeproject.org/files/ENCFF329NJZ/@@download/ENCFF329NJZ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF825ADB bed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF034CII, ENCFF082TGD 1499554 ENCODE Processing Pipeline f24dbe61d31facd0bb6ccb16e16ad265 https://www.encodeproject.org/files/ENCFF825ADB/@@download/ENCFF825ADB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF811UEN bed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF329NJZ 1551662 ENCODE Processing Pipeline 9325de8c804e8f1fd93a0ca8556b640c https://www.encodeproject.org/files/ENCFF811UEN/@@download/ENCFF811UEN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF176XMK bed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF034CII, ENCFF082TGD, ENCFF314ZXJ, ENCFF329NJZ 1812142 ENCODE Processing Pipeline b16658e5d645fec55086fea2f5851cca https://www.encodeproject.org/files/ENCFF176XMK/@@download/ENCFF176XMK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF209GIA bigBed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF825ADB 4465872 ENCODE Processing Pipeline fee270291127e7f8885268bc966e0ede https://www.encodeproject.org/files/ENCFF209GIA/@@download/ENCFF209GIA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF387YLT bigBed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF176XMK 5190276 ENCODE Processing Pipeline fca3ff9941a50f87c2cbb9f253819b2b https://www.encodeproject.org/files/ENCFF387YLT/@@download/ENCFF387YLT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF199IPP bigWig signal p-value ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF034CII, ENCFF082TGD 628676312 ENCODE Processing Pipeline 2d53f9ff9a94cf5fe4185fa612a5bef6 https://www.encodeproject.org/files/ENCFF199IPP/@@download/ENCFF199IPP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF873KHF bigBed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF811UEN 4594957 ENCODE Processing Pipeline 55c7b66353d0693e624eebd4f96ea6da https://www.encodeproject.org/files/ENCFF873KHF/@@download/ENCFF873KHF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF186LZA bigWig signal p-value ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF329NJZ 794741889 ENCODE Processing Pipeline d4c570571046896df61fac4bf3c679ba https://www.encodeproject.org/files/ENCFF186LZA/@@download/ENCFF186LZA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF400JHY bigWig signal p-value ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF034CII, ENCFF082TGD, ENCFF314ZXJ, ENCFF329NJZ 918277589 ENCODE Processing Pipeline f1ac7252fc8878ca2412fcbd30913d2a https://www.encodeproject.org/files/ENCFF400JHY/@@download/ENCFF400JHY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF422DTX bigWig fold change over control ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF034CII, ENCFF082TGD 699803347 ENCODE Processing Pipeline 5fe75f9e3aeafcabf9d0941c336b9e78 https://www.encodeproject.org/files/ENCFF422DTX/@@download/ENCFF422DTX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF207GDC bigWig fold change over control ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF082TGD, ENCFF314ZXJ, ENCFF329NJZ 945749370 ENCODE Processing Pipeline 4bef995951b053487353f9b183284420 https://www.encodeproject.org/files/ENCFF207GDC/@@download/ENCFF207GDC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF855UWW bigWig fold change over control ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF034CII, ENCFF082TGD, ENCFF314ZXJ, ENCFF329NJZ 1302692562 ENCODE Processing Pipeline 9764daf4f66654da54aef89503765c2d https://www.encodeproject.org/files/ENCFF855UWW/@@download/ENCFF855UWW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF371CSO bed narrowPeak replicated peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF176XMK, ENCFF811UEN, ENCFF825ADB 1433940 ENCODE Processing Pipeline 693e13f7b2d128de30fd85e0e7cbb419 https://www.encodeproject.org/files/ENCFF371CSO/@@download/ENCFF371CSO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF380LEA bigBed narrowPeak replicated peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF371CSO 3175309 ENCODE Processing Pipeline e7d6a7eac4b790c9376b56b725b0b30d https://www.encodeproject.org/files/ENCFF380LEA/@@download/ENCFF380LEA.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF008MRM bam unfiltered alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF794KXJ 2899118788 ENCODE Processing Pipeline 729dd5124dd63c533ead7580f8bb3592 https://www.encodeproject.org/files/ENCFF008MRM/@@download/ENCFF008MRM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF763SGM bam unfiltered alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF749CTY 2592559862 ENCODE Processing Pipeline d96c63eba8431d5fb8063375a375cdca https://www.encodeproject.org/files/ENCFF763SGM/@@download/ENCFF763SGM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF413NTF bam alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF749CTY 1842954644 ENCODE Processing Pipeline 20adba59f913b85e3361392dc002eb75 https://www.encodeproject.org/files/ENCFF413NTF/@@download/ENCFF413NTF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF156DKT bam alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF794KXJ 1993244807 ENCODE Processing Pipeline 5f08ec30a39ce2d33ee0f2b29b3b6982 https://www.encodeproject.org/files/ENCFF156DKT/@@download/ENCFF156DKT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF449PRK bed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF156DKT, ENCFF164ZUK 1364084 ENCODE Processing Pipeline 7442c9075b42985218d7eaa831c14f91 https://www.encodeproject.org/files/ENCFF449PRK/@@download/ENCFF449PRK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF800EDE bed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF413NTF, ENCFF615JIE 1533161 ENCODE Processing Pipeline bea17e691eb331e45d698fdd13b5ffdc https://www.encodeproject.org/files/ENCFF800EDE/@@download/ENCFF800EDE.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF225CST bigBed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF799LYD 5298882 ENCODE Processing Pipeline 47ebb5fea0ca5fa3a3edba3c25b54b54 https://www.encodeproject.org/files/ENCFF225CST/@@download/ENCFF225CST.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF582IFP bigBed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF800EDE 4555327 ENCODE Processing Pipeline fbba325ee0d1bea26b36b080830f299f https://www.encodeproject.org/files/ENCFF582IFP/@@download/ENCFF582IFP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF799LYD bed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF156DKT, ENCFF164ZUK, ENCFF413NTF, ENCFF615JIE 1853738 ENCODE Processing Pipeline e88b5bfd9dbfb9bdb31bc9ce94be6125 https://www.encodeproject.org/files/ENCFF799LYD/@@download/ENCFF799LYD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF783DES bigBed narrowPeak peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF449PRK 4087158 ENCODE Processing Pipeline 451d13e688a798c125610aea13b8b852 https://www.encodeproject.org/files/ENCFF783DES/@@download/ENCFF783DES.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF344UCN bigWig signal p-value ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF413NTF, ENCFF615JIE 719406962 ENCODE Processing Pipeline 733cb8acb74735715930e35026cc9a7e https://www.encodeproject.org/files/ENCFF344UCN/@@download/ENCFF344UCN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF826IFG bigWig signal p-value ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF156DKT, ENCFF164ZUK 769607224 ENCODE Processing Pipeline e07b59fbb7644e27522dcd43a6c388a9 https://www.encodeproject.org/files/ENCFF826IFG/@@download/ENCFF826IFG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF485APO bigWig signal p-value ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF156DKT, ENCFF164ZUK, ENCFF413NTF, ENCFF615JIE 1199998824 ENCODE Processing Pipeline a10b80a4903cb9134ac61dc295b11925 https://www.encodeproject.org/files/ENCFF485APO/@@download/ENCFF485APO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF479AWV bigWig fold change over control ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF413NTF, ENCFF615JIE 737510083 ENCODE Processing Pipeline d3976227d011c46adbd43cb0f9071b15 https://www.encodeproject.org/files/ENCFF479AWV/@@download/ENCFF479AWV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF441GMP bigWig fold change over control ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF156DKT, ENCFF164ZUK 749451335 ENCODE Processing Pipeline 220cd979c08af64266bb7e40d6ee0ec5 https://www.encodeproject.org/files/ENCFF441GMP/@@download/ENCFF441GMP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF121XJR bigWig fold change over control ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF156DKT, ENCFF164ZUK, ENCFF413NTF, ENCFF615JIE 1438483789 ENCODE Processing Pipeline 81349d5afedc40dda22daa5e0c397a88 https://www.encodeproject.org/files/ENCFF121XJR/@@download/ENCFF121XJR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF877YAM bed narrowPeak replicated peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF449PRK, ENCFF799LYD, ENCFF800EDE 1417438 ENCODE Processing Pipeline 8522d3de7d60c114a26728c8201e9b29 https://www.encodeproject.org/files/ENCFF877YAM/@@download/ENCFF877YAM.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF825MTF bigBed narrowPeak replicated peaks ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF877YAM 3124245 ENCODE Processing Pipeline 8dc0e8d9cb8fc1bc39fbee6d9c90010d https://www.encodeproject.org/files/ENCFF825MTF/@@download/ENCFF825MTF.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001LQL bigBed broadPeak peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAX 390596 Bing Ren, UCSD 490bd4c874c6fd1a1ecc4eb0288ad842 https://www.encodeproject.org/files/ENCFF001LQL/@@download/ENCFF001LQL.bigBed mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001LQM bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LQU 695114168 Bing Ren, UCSD 99716221ccf18ebdaff804d3eb8b0f28 https://www.encodeproject.org/files/ENCFF001LQM/@@download/ENCFF001LQM.bam mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001LQN bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LQW 1409643306 Bing Ren, UCSD fa4559c386ca1cf2b6759806fc268f37 https://www.encodeproject.org/files/ENCFF001LQN/@@download/ENCFF001LQN.bam mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001LQP bigWig signal ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LQM, ENCFF001LQN 64597442 Bing Ren, UCSD 40cf2bece5fa74c2162527542204e9e6 https://www.encodeproject.org/files/ENCFF001LQP/@@download/ENCFF001LQP.bigWig mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001LQU fastq reads ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 977574900 Bing Ren, UCSD 3d4ccd017c64d2c57bd17942ab017c48 https://www.encodeproject.org/files/ENCFF001LQU/@@download/ENCFF001LQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUJ/ released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001LQW fastq reads ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1852567088 Bing Ren, UCSD 17d6a24edc41c408b0076f9eac69b20e https://www.encodeproject.org/files/ENCFF001LQW/@@download/ENCFF001LQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001YAX bed broadPeak peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LQM, ENCFF001LQN 280424 Bing Ren, UCSD 8812f0c83a9883710c034b1e4a2f76d3 https://www.encodeproject.org/files/ENCFF001YAX/@@download/ENCFF001YAX.bed.gz mm9 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF925AHK bam unfiltered alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQU, ENCFF018NEO 1043021361 ENCODE Processing Pipeline a7567297eb50d5cd562b01df3d510b5c https://www.encodeproject.org/files/ENCFF925AHK/@@download/ENCFF925AHK.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF857JHL bam unfiltered alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQW, ENCFF018NEO 2062788616 ENCODE Processing Pipeline 9b5c31c560778ccfdde853402176d0df https://www.encodeproject.org/files/ENCFF857JHL/@@download/ENCFF857JHL.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF373MQG bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQU, ENCFF018NEO 543166914 ENCODE Processing Pipeline 67d87bcdc3f8d10a09771a801059a7bc https://www.encodeproject.org/files/ENCFF373MQG/@@download/ENCFF373MQG.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF894XUQ bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQW, ENCFF018NEO 1412738132 ENCODE Processing Pipeline 8accab6420c95f2dbd6a346bcce20a0c https://www.encodeproject.org/files/ENCFF894XUQ/@@download/ENCFF894XUQ.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF601NUV bigWig signal p-value ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF242QZL, ENCFF769FTV, ENCFF894XUQ 697286740 ENCODE Processing Pipeline e103d76a6dc61c7b6bf9e57d4839671f https://www.encodeproject.org/files/ENCFF601NUV/@@download/ENCFF601NUV.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF316WQV bigWig signal p-value ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF373MQG, ENCFF769FTV 286835357 ENCODE Processing Pipeline ee1cf8b51bfaa6c5e6b9661de1f81eb9 https://www.encodeproject.org/files/ENCFF316WQV/@@download/ENCFF316WQV.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF184SYO bigWig signal p-value ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF242QZL, ENCFF373MQG, ENCFF769FTV, ENCFF894XUQ 769938556 ENCODE Processing Pipeline 5eba9a237d9842870c2ed0902b79f084 https://www.encodeproject.org/files/ENCFF184SYO/@@download/ENCFF184SYO.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF656GAL bigWig fold change over control ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF373MQG, ENCFF769FTV 280438118 ENCODE Processing Pipeline c3d27adca5cffe4acaf60c83ccb8e59c https://www.encodeproject.org/files/ENCFF656GAL/@@download/ENCFF656GAL.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF873JPZ bigWig fold change over control ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF242QZL, ENCFF769FTV, ENCFF894XUQ 607642681 ENCODE Processing Pipeline 066240c01d1caf2b3c4c5fa63317f3ba https://www.encodeproject.org/files/ENCFF873JPZ/@@download/ENCFF873JPZ.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF820TWT bigWig fold change over control ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF242QZL, ENCFF373MQG, ENCFF769FTV, ENCFF894XUQ 786064135 ENCODE Processing Pipeline 412f2153a62a47cda852aa54ee2595df https://www.encodeproject.org/files/ENCFF820TWT/@@download/ENCFF820TWT.bigWig mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF687OPD bed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF373MQG, ENCFF769FTV 5790051 ENCODE Processing Pipeline 70031c113d05ac09afa8df87b5f3857e https://www.encodeproject.org/files/ENCFF687OPD/@@download/ENCFF687OPD.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF968EUZ bed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF242QZL, ENCFF769FTV, ENCFF894XUQ 6502712 ENCODE Processing Pipeline 9d9e07412904f34bbd51460e5f9e6cf0 https://www.encodeproject.org/files/ENCFF968EUZ/@@download/ENCFF968EUZ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF402RSB bed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF242QZL, ENCFF373MQG, ENCFF769FTV, ENCFF894XUQ 7022644 ENCODE Processing Pipeline bdc9d613f4f6011678423da0555bec30 https://www.encodeproject.org/files/ENCFF402RSB/@@download/ENCFF402RSB.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF529TNO bigBed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF687OPD 12888713 ENCODE Processing Pipeline ae8e2bb1fda5a16aa381cfe89d595f12 https://www.encodeproject.org/files/ENCFF529TNO/@@download/ENCFF529TNO.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF918VSQ bed narrowPeak conservative idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF402RSB, ENCFF547MET, ENCFF687OPD, ENCFF968EUZ 227845 ENCODE Processing Pipeline a4425a0de806176fe208f5f13284d0ac https://www.encodeproject.org/files/ENCFF918VSQ/@@download/ENCFF918VSQ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF277DEJ bigBed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF968EUZ 13094679 ENCODE Processing Pipeline 2a41eca32f485cae9d642d717ee80baf https://www.encodeproject.org/files/ENCFF277DEJ/@@download/ENCFF277DEJ.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF727ZTX bigBed narrowPeak peaks and background as input for IDR ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF402RSB 12927444 ENCODE Processing Pipeline 87fb78c45deb881d821dd1a3fead5513 https://www.encodeproject.org/files/ENCFF727ZTX/@@download/ENCFF727ZTX.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF853DWK bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF918VSQ 450308 ENCODE Processing Pipeline 8e1ea04b8790fe4df59383940a918afa https://www.encodeproject.org/files/ENCFF853DWK/@@download/ENCFF853DWK.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF474YPG bed narrowPeak optimal idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF402RSB, ENCFF547MET, ENCFF687OPD, ENCFF968EUZ 268169 ENCODE Processing Pipeline ed45219ec5b2e5f0ed7173080aa14ff9 https://www.encodeproject.org/files/ENCFF474YPG/@@download/ENCFF474YPG.bed.gz mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF666OHT bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF474YPG 615457 ENCODE Processing Pipeline 46c8daec1aa8edd0e5cba08db58a3165 https://www.encodeproject.org/files/ENCFF666OHT/@@download/ENCFF666OHT.bigBed mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF001NIV bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NJR 484699354 Michael Snyder, Stanford 65af3b7c77f755acb12a588bdfe6c657 https://www.encodeproject.org/files/ENCFF001NIV/@@download/ENCFF001NIV.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NIW bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NJU 522273308 Michael Snyder, Stanford db9c466ebc0d956a32ebe5b862d3bf18 https://www.encodeproject.org/files/ENCFF001NIW/@@download/ENCFF001NIW.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NIX bigBed narrowPeak peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIF 1135730 Michael Snyder, Stanford 8e2235b645baec2f4c906a6fc95d4ca0 https://www.encodeproject.org/files/ENCFF001NIX/@@download/ENCFF001NIX.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NIY bigWig signal ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NIV, ENCFF001NIW 346573751 Michael Snyder, Stanford bb2e2d5afdc3b6f889ea0a9abe83b298 https://www.encodeproject.org/files/ENCFF001NIY/@@download/ENCFF001NIY.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NJR fastq reads ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 916929123 Michael Snyder, Stanford ba0583a44ecc855561a5cbfa5b05b976 https://www.encodeproject.org/files/ENCFF001NJR/@@download/ENCFF001NJR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NJU fastq reads ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1025607393 Michael Snyder, Stanford 6fa596c4a79f72dce31c82f2569d4c8b https://www.encodeproject.org/files/ENCFF001NJU/@@download/ENCFF001NJU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001YIF bed narrowPeak peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NIV, ENCFF001NIW 507189 Michael Snyder, Stanford 155616eca79faf21680243cc1f9fe7f3 https://www.encodeproject.org/files/ENCFF001YIF/@@download/ENCFF001YIF.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF447EFQ bam unfiltered alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJR, ENCFF018NEO 1069686742 ENCODE Processing Pipeline c8cae4f498dfcf214add44d2a09f1169 https://www.encodeproject.org/files/ENCFF447EFQ/@@download/ENCFF447EFQ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF129QDM bam unfiltered alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJU, ENCFF018NEO 1172013878 ENCODE Processing Pipeline b913a4c98dc433b540ee179c27d2b7c5 https://www.encodeproject.org/files/ENCFF129QDM/@@download/ENCFF129QDM.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF927UUZ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJU, ENCFF018NEO 754294637 ENCODE Processing Pipeline c14a9d5f0e4b62be5177749d8da5736a https://www.encodeproject.org/files/ENCFF927UUZ/@@download/ENCFF927UUZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF316DIJ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJR, ENCFF018NEO 698509644 ENCODE Processing Pipeline 5dd6c6f86d1527d5248128e8b9fe185c https://www.encodeproject.org/files/ENCFF316DIJ/@@download/ENCFF316DIJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF862DUC bigWig signal p-value ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF316DIJ, ENCFF339ZWC 236709668 ENCODE Processing Pipeline 7ab460cc2492276cbe7411e9ac95bfa0 https://www.encodeproject.org/files/ENCFF862DUC/@@download/ENCFF862DUC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF007WOA bigWig signal p-value ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF927UUZ 239116108 ENCODE Processing Pipeline 43c3867ee3c8ce81a09da21cdfa44d15 https://www.encodeproject.org/files/ENCFF007WOA/@@download/ENCFF007WOA.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF360AAK bigWig fold change over control ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF927UUZ 301768694 ENCODE Processing Pipeline b5cd256b814c2f8a2f709e2fd45ef516 https://www.encodeproject.org/files/ENCFF360AAK/@@download/ENCFF360AAK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF942CER bigWig signal p-value ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF316DIJ, ENCFF339ZWC, ENCFF927UUZ 217762040 ENCODE Processing Pipeline 6d08e3697f7c26d7653b161cff495451 https://www.encodeproject.org/files/ENCFF942CER/@@download/ENCFF942CER.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF945VVN bigWig fold change over control ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF316DIJ, ENCFF339ZWC 291907219 ENCODE Processing Pipeline dcdad968fc677f2d1f7753ae016bdf0d https://www.encodeproject.org/files/ENCFF945VVN/@@download/ENCFF945VVN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF724BKJ bigWig fold change over control ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF316DIJ, ENCFF339ZWC, ENCFF927UUZ 505432312 ENCODE Processing Pipeline ab72bd7465fa1fbe8b02ea8dbd72b2f2 https://www.encodeproject.org/files/ENCFF724BKJ/@@download/ENCFF724BKJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF411DQD bed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF927UUZ 5750896 ENCODE Processing Pipeline d5e4e591712238f025bd57162e3f49f6 https://www.encodeproject.org/files/ENCFF411DQD/@@download/ENCFF411DQD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF933KUS bed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF316DIJ, ENCFF339ZWC 5498401 ENCODE Processing Pipeline 5863fa03ecd0a6d44fec16a4c4cd20d6 https://www.encodeproject.org/files/ENCFF933KUS/@@download/ENCFF933KUS.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF542YQE bigBed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF774NDZ 12738963 ENCODE Processing Pipeline 6e88ae0f0dea35e37b640f6ed86a57f8 https://www.encodeproject.org/files/ENCFF542YQE/@@download/ENCFF542YQE.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF774NDZ bed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF316DIJ, ENCFF339ZWC, ENCFF927UUZ 6184623 ENCODE Processing Pipeline 8fa02155d2feed48679ec47e1170c661 https://www.encodeproject.org/files/ENCFF774NDZ/@@download/ENCFF774NDZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF583DTV bigBed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF933KUS 12802874 ENCODE Processing Pipeline dab46fcaef668ed61f98e96f599f45ab https://www.encodeproject.org/files/ENCFF583DTV/@@download/ENCFF583DTV.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF651YGM bigBed narrowPeak peaks and background as input for IDR ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF411DQD 12824844 ENCODE Processing Pipeline ca2458a854750555dd573a6533b77652 https://www.encodeproject.org/files/ENCFF651YGM/@@download/ENCFF651YGM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF677GTK bed narrowPeak conservative idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF411DQD, ENCFF547MET, ENCFF774NDZ, ENCFF933KUS 549529 ENCODE Processing Pipeline 02ed60bd82a89f751ae2ecf6f7ff5f55 https://www.encodeproject.org/files/ENCFF677GTK/@@download/ENCFF677GTK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF487TBQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF677GTK 1340618 ENCODE Processing Pipeline 82c6484e39ccbfd3acd01c10804b4662 https://www.encodeproject.org/files/ENCFF487TBQ/@@download/ENCFF487TBQ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF597MNA bed narrowPeak optimal idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF411DQD, ENCFF547MET, ENCFF774NDZ, ENCFF933KUS 607171 ENCODE Processing Pipeline eff9a7917a097096c3868fb1ba776295 https://www.encodeproject.org/files/ENCFF597MNA/@@download/ENCFF597MNA.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF618AOC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF597MNA 1452590 ENCODE Processing Pipeline 9cbf43bfe04aaa1cdc992feeda6b83bc https://www.encodeproject.org/files/ENCFF618AOC/@@download/ENCFF618AOC.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001IDF bigBed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUU 625115 Barbara Wold, Caltech 0e42f7f0df8297945b42d45849201e23 https://www.encodeproject.org/files/ENCFF001IDF/@@download/ENCFF001IDF.bigBed mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IDG fastq reads ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 306507691 Barbara Wold, Caltech 14e46768a62b3240f119f0a39b507f1e https://www.encodeproject.org/files/ENCFF001IDG/@@download/ENCFF001IDG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IDH fastq reads ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 537117380 Barbara Wold, Caltech 01e97f13c88fb2348614682669c809b8 https://www.encodeproject.org/files/ENCFF001IDH/@@download/ENCFF001IDH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IDI bam alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IDG, ENCFF001IDH 896303608 Barbara Wold, Caltech b97e110b6ce6d0d281d395cd29a6bf56 https://www.encodeproject.org/files/ENCFF001IDI/@@download/ENCFF001IDI.bam mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IDJ bigWig signal ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDI 63720782 Barbara Wold, Caltech 0df785303d434c54466a44b83be52712 https://www.encodeproject.org/files/ENCFF001IDJ/@@download/ENCFF001IDJ.bigWig mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF001XUU bed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IDI 343593 Barbara Wold, Caltech b619c5288c7a48425dac7e4137936d89 https://www.encodeproject.org/files/ENCFF001XUU/@@download/ENCFF001XUU.bed.gz mm9 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF576UTL bam alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IDG, ENCFF001IDH, ENCFF018NEO 288637574 ENCODE Processing Pipeline 3018c323e485490fe662d3bb143736df https://www.encodeproject.org/files/ENCFF576UTL/@@download/ENCFF576UTL.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF632XYW bam unfiltered alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IDG, ENCFF001IDH, ENCFF018NEO 934548232 ENCODE Processing Pipeline db4d8998fb34af33a30ea9a47bd037fc https://www.encodeproject.org/files/ENCFF632XYW/@@download/ENCFF632XYW.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF244USU bigWig signal p-value ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 180134964 ENCODE Processing Pipeline 0b2d330b899cfda57bfb06fa2400da07 https://www.encodeproject.org/files/ENCFF244USU/@@download/ENCFF244USU.bigWig mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF583QSM bigWig fold change over control ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 118353761 ENCODE Processing Pipeline aa31c21519cf9a103f0feed981818e13 https://www.encodeproject.org/files/ENCFF583QSM/@@download/ENCFF583QSM.bigWig mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF883OZA bed narrowPeak peaks and background as input for IDR ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 2339221 ENCODE Processing Pipeline 10d541b1f0bf44feaf43c790ea6e7317 https://www.encodeproject.org/files/ENCFF883OZA/@@download/ENCFF883OZA.bed.gz mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF297NKN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF883OZA 267022 ENCODE Processing Pipeline 1803df1e59bc054e0899ee1b332dea86 https://www.encodeproject.org/files/ENCFF297NKN/@@download/ENCFF297NKN.bed.gz mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF838PJT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297NKN 438377 ENCODE Processing Pipeline 729a48c1dc4d5102d42747f50637d513 https://www.encodeproject.org/files/ENCFF838PJT/@@download/ENCFF838PJT.bigBed mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF196FBN bigBed narrowPeak peaks and background as input for IDR ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF883OZA 4799767 ENCODE Processing Pipeline 2037167bca90f145ca842db6078b0100 https://www.encodeproject.org/files/ENCFF196FBN/@@download/ENCFF196FBN.bigBed mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF084WKN fastq reads ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 1419846345 Bing Ren, UCSD 169fa53a453766feb9b4a0978fa9336c SRA:SRR3651423 https://www.encodeproject.org/files/ENCFF084WKN/@@download/ENCFF084WKN.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF030JLO fastq reads ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 1740647634 Bing Ren, UCSD a49f0dec65f90be6c0917e7b89ddbb37 SRA:SRR3651425 https://www.encodeproject.org/files/ENCFF030JLO/@@download/ENCFF030JLO.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF411ZWQ fastq reads ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 2 50 single-ended 960214191 Bing Ren, UCSD b769b0e247c660708b96e93672c0a145 SRA:SRR3651424 https://www.encodeproject.org/files/ENCFF411ZWQ/@@download/ENCFF411ZWQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF195YOF bam alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF030JLO, ENCFF806TVZ 1143111603 ENCODE Processing Pipeline c8ddd7ce525a957500d29c726865cbb0 https://www.encodeproject.org/files/ENCFF195YOF/@@download/ENCFF195YOF.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF020XME bam alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF084WKN, ENCFF411ZWQ, ENCFF806TVZ 987095782 ENCODE Processing Pipeline 381656114b7dabb84d2532027c500e10 https://www.encodeproject.org/files/ENCFF020XME/@@download/ENCFF020XME.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF990CNJ bigBed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF755MEY 5563393 ENCODE Processing Pipeline 46125c0d46189104816ead67bef0df84 https://www.encodeproject.org/files/ENCFF990CNJ/@@download/ENCFF990CNJ.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF999HIT bed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF195YOF, ENCFF720CTQ 1811287 ENCODE Processing Pipeline c9aa5ffab6511eaa76f99a2e035f2e86 https://www.encodeproject.org/files/ENCFF999HIT/@@download/ENCFF999HIT.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF543NZZ bigBed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF189TUL 4738450 ENCODE Processing Pipeline 427737905825df64c8e5d79805cbebef https://www.encodeproject.org/files/ENCFF543NZZ/@@download/ENCFF543NZZ.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF755MEY bed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF020XME, ENCFF195YOF, ENCFF294RLZ, ENCFF720CTQ 2033054 ENCODE Processing Pipeline 122b288875285485bdc7d7dc54057b8b https://www.encodeproject.org/files/ENCFF755MEY/@@download/ENCFF755MEY.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF309MGW bigBed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF999HIT 5105564 ENCODE Processing Pipeline 12cc09504672911f619c9b0f4b35af3b https://www.encodeproject.org/files/ENCFF309MGW/@@download/ENCFF309MGW.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF147MKY bigWig signal p-value ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF195YOF, ENCFF720CTQ 653655349 ENCODE Processing Pipeline 98e3729771b46e20bc586f847a658af9 https://www.encodeproject.org/files/ENCFF147MKY/@@download/ENCFF147MKY.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF117CNY bigWig signal p-value ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF020XME, ENCFF195YOF, ENCFF294RLZ, ENCFF720CTQ 1214911895 ENCODE Processing Pipeline 0f2f7d7a33915fc271269493656d8072 https://www.encodeproject.org/files/ENCFF117CNY/@@download/ENCFF117CNY.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF558LZP bigBed narrowPeak replicated peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF094SDC 3326404 ENCODE Processing Pipeline a8357eac045442d314d1e7f510095fbc https://www.encodeproject.org/files/ENCFF558LZP/@@download/ENCFF558LZP.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF189TUL bed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF020XME, ENCFF294RLZ 1647104 ENCODE Processing Pipeline 878f9847ce7ce98c8546bc4758579cb1 https://www.encodeproject.org/files/ENCFF189TUL/@@download/ENCFF189TUL.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF987PJH bigWig signal p-value ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF020XME, ENCFF294RLZ 579951626 ENCODE Processing Pipeline 25f100e78e89211c960d5ca4241652f4 https://www.encodeproject.org/files/ENCFF987PJH/@@download/ENCFF987PJH.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF288XXC bigWig fold change over control ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF020XME, ENCFF294RLZ 583203063 ENCODE Processing Pipeline e78225f26dc0e6c6a39019f5d96191c2 https://www.encodeproject.org/files/ENCFF288XXC/@@download/ENCFF288XXC.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF094SDC bed narrowPeak replicated peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF189TUL, ENCFF755MEY, ENCFF999HIT 1607992 ENCODE Processing Pipeline 47db4b20f8423fc596c44c54507a245b https://www.encodeproject.org/files/ENCFF094SDC/@@download/ENCFF094SDC.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF785HMH bigWig fold change over control ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF195YOF, ENCFF720CTQ 634152195 ENCODE Processing Pipeline e1db9bec4f4d11bb478d6cf6a8fb2486 https://www.encodeproject.org/files/ENCFF785HMH/@@download/ENCFF785HMH.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF555YSY bigWig fold change over control ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF020XME, ENCFF195YOF, ENCFF294RLZ, ENCFF720CTQ 1250787102 ENCODE Processing Pipeline d48d68aad00a28abdc160e4656df6aca https://www.encodeproject.org/files/ENCFF555YSY/@@download/ENCFF555YSY.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF901LMO bam unfiltered alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF084WKN, ENCFF411ZWQ 2740588021 ENCODE Processing Pipeline c59b08b813c0a245d5d53de2666a83f5 https://www.encodeproject.org/files/ENCFF901LMO/@@download/ENCFF901LMO.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF855DYC bam unfiltered alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF030JLO 2121112953 ENCODE Processing Pipeline 36e94b6248955ca1c5cbcbaee0d17ce4 https://www.encodeproject.org/files/ENCFF855DYC/@@download/ENCFF855DYC.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF218WWW bam alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF084WKN, ENCFF411ZWQ 986851819 ENCODE Processing Pipeline f14e016aae2ce0fe0ecf75e9bbdcaa81 https://www.encodeproject.org/files/ENCFF218WWW/@@download/ENCFF218WWW.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF778SLY bam alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF030JLO 1142852414 ENCODE Processing Pipeline a8360777b9991626a6dcbf4c6418cb7e https://www.encodeproject.org/files/ENCFF778SLY/@@download/ENCFF778SLY.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF579VFZ bed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF778SLY 1779301 ENCODE Processing Pipeline 38f41836695546d21714dcb35594f5c7 https://www.encodeproject.org/files/ENCFF579VFZ/@@download/ENCFF579VFZ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF315TXM bed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF218WWW, ENCFF741HOY 1647497 ENCODE Processing Pipeline c786a3ff02d11c1c890b4c85238e89fa https://www.encodeproject.org/files/ENCFF315TXM/@@download/ENCFF315TXM.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF004DZW bed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF218WWW, ENCFF741HOY, ENCFF778SLY 2077113 ENCODE Processing Pipeline 0a00bcce2bcad6ab13304c703b7b207d https://www.encodeproject.org/files/ENCFF004DZW/@@download/ENCFF004DZW.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF008TVM bigBed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF315TXM 4737755 ENCODE Processing Pipeline 156abf84ea8bf65a0d2a6c6a4b02238e https://www.encodeproject.org/files/ENCFF008TVM/@@download/ENCFF008TVM.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF813OOM bigBed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF579VFZ 5026479 ENCODE Processing Pipeline 42dde01c90abf440a440ff4c5e972c9e https://www.encodeproject.org/files/ENCFF813OOM/@@download/ENCFF813OOM.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF080HEI bigBed narrowPeak peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF004DZW 5691895 ENCODE Processing Pipeline c7682bc64d957ef1ab3a199f2f6e405a https://www.encodeproject.org/files/ENCFF080HEI/@@download/ENCFF080HEI.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF789CSI bigWig signal p-value ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF218WWW, ENCFF741HOY 588944411 ENCODE Processing Pipeline d499746e18ce5dbd91916f91dc666970 https://www.encodeproject.org/files/ENCFF789CSI/@@download/ENCFF789CSI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF308GZX bigWig signal p-value ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF778SLY 661043598 ENCODE Processing Pipeline 0ef9170e0a44f952605393dbab3b2c60 https://www.encodeproject.org/files/ENCFF308GZX/@@download/ENCFF308GZX.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF346DDT bigWig signal p-value ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF218WWW, ENCFF741HOY, ENCFF778SLY 1193496256 ENCODE Processing Pipeline 526e338d09a94679457e3a044b0115b3 https://www.encodeproject.org/files/ENCFF346DDT/@@download/ENCFF346DDT.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF223MNC bigWig fold change over control ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF218WWW, ENCFF741HOY 584106715 ENCODE Processing Pipeline a8633be1b0b4352873a21dc5801de994 https://www.encodeproject.org/files/ENCFF223MNC/@@download/ENCFF223MNC.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF820OQH bigWig fold change over control ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF778SLY 647411744 ENCODE Processing Pipeline f1b15ce9862df0c7fe85e2023cac04ea https://www.encodeproject.org/files/ENCFF820OQH/@@download/ENCFF820OQH.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF937AXD bigWig fold change over control ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF218WWW, ENCFF741HOY, ENCFF778SLY 1261160007 ENCODE Processing Pipeline 3314bc5a5c1af9f39a23d45decadd4c2 https://www.encodeproject.org/files/ENCFF937AXD/@@download/ENCFF937AXD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF323EFD bed narrowPeak replicated peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF004DZW, ENCFF315TXM, ENCFF579VFZ 1623271 ENCODE Processing Pipeline 282f4aed7d31628699f1ebbf2e0e8b90 https://www.encodeproject.org/files/ENCFF323EFD/@@download/ENCFF323EFD.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF110JUP bigBed narrowPeak replicated peaks ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF323EFD 3358487 ENCODE Processing Pipeline fceba1efc91190e87f6e3a2e2ba7db7f https://www.encodeproject.org/files/ENCFF110JUP/@@download/ENCFF110JUP.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF991BUI fastq reads ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 1 50 single-ended 2676550975 Bing Ren, UCSD 5e2c9eb72ced03a507aac7aea56920ae SRA:SRR3651421 https://www.encodeproject.org/files/ENCFF991BUI/@@download/ENCFF991BUI.fastq.gz Illumina HiSeq 4000 /files/ENCFF346LFH/, /files/ENCFF630SQJ/ released mild to moderate bottlenecking ENCFF614SSQ fastq reads ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 1 50 single-ended 2618769250 Bing Ren, UCSD 23abb64790b6ed80461a1ebf8674e038 SRA:SRR3651422 https://www.encodeproject.org/files/ENCFF614SSQ/@@download/ENCFF614SSQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF440KRN/ released mild to moderate bottlenecking ENCFF942UTD bam alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF806TVZ, ENCFF991BUI 2311599473 ENCODE Processing Pipeline ed532e49e7ebe2f90210bb2da64d4698 https://www.encodeproject.org/files/ENCFF942UTD/@@download/ENCFF942UTD.bam mm10-minimal archived mild to moderate bottlenecking ENCFF670AWZ bam alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF614SSQ, ENCFF806TVZ 2403323008 ENCODE Processing Pipeline c369bef4fc338a8a2daeea7ac0045d3d https://www.encodeproject.org/files/ENCFF670AWZ/@@download/ENCFF670AWZ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF569HDU bed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF942UTD 2194545 ENCODE Processing Pipeline cc3204beaa11de38502ad84d8ff817d5 https://www.encodeproject.org/files/ENCFF569HDU/@@download/ENCFF569HDU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF795HPG bigWig signal p-value ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF670AWZ, ENCFF720CTQ 1063941408 ENCODE Processing Pipeline 0721a4371058f6506f8848ab3b432ac7 https://www.encodeproject.org/files/ENCFF795HPG/@@download/ENCFF795HPG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF464EYM bigBed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF569HDU 5887827 ENCODE Processing Pipeline eb8beafa906a6b2622c2cc2b78c16321 https://www.encodeproject.org/files/ENCFF464EYM/@@download/ENCFF464EYM.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF510HCD bed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF670AWZ, ENCFF720CTQ 1991295 ENCODE Processing Pipeline 07137c904ce17cfd9adf75999a4e0292 https://www.encodeproject.org/files/ENCFF510HCD/@@download/ENCFF510HCD.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF495ERC bed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF670AWZ, ENCFF720CTQ, ENCFF942UTD 2963538 ENCODE Processing Pipeline 9ec62b1ce0a58bb94b558dd092259139 https://www.encodeproject.org/files/ENCFF495ERC/@@download/ENCFF495ERC.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF279RFX bigWig signal p-value ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF942UTD 697568646 ENCODE Processing Pipeline 0eac2f0f72dde3e9f3f05d62d19229db https://www.encodeproject.org/files/ENCFF279RFX/@@download/ENCFF279RFX.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF696HMP bigWig signal p-value ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF670AWZ, ENCFF720CTQ, ENCFF942UTD 1484296517 ENCODE Processing Pipeline e6de58cd624f57847e018010f5b841cb https://www.encodeproject.org/files/ENCFF696HMP/@@download/ENCFF696HMP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF347GNT bigWig fold change over control ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF294RLZ, ENCFF942UTD 946567335 ENCODE Processing Pipeline ee783faec8c0c339dd7adac0419f88bb https://www.encodeproject.org/files/ENCFF347GNT/@@download/ENCFF347GNT.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF997BRG bigWig fold change over control ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF670AWZ, ENCFF720CTQ 1029027586 ENCODE Processing Pipeline 0d48abbf77bbab33f0e618d1fbf2d67a https://www.encodeproject.org/files/ENCFF997BRG/@@download/ENCFF997BRG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF312BPB bigBed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF510HCD 5427203 ENCODE Processing Pipeline 2f75d784cfe6c8f9714860e0c6c4e830 https://www.encodeproject.org/files/ENCFF312BPB/@@download/ENCFF312BPB.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF555GRF bigBed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF495ERC 7592322 ENCODE Processing Pipeline 46bfce4c5017c529c04eb7c7931ac73d https://www.encodeproject.org/files/ENCFF555GRF/@@download/ENCFF555GRF.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF326WDT bed narrowPeak replicated peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF495ERC, ENCFF510HCD, ENCFF569HDU 1614808 ENCODE Processing Pipeline 62d9fdb9627c1447cb39c5bf794cf0e7 https://www.encodeproject.org/files/ENCFF326WDT/@@download/ENCFF326WDT.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF599OXB bigWig fold change over control ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF294RLZ, ENCFF670AWZ, ENCFF720CTQ, ENCFF942UTD 1814197866 ENCODE Processing Pipeline 22e84cd378942909ca5ff259f0c52d96 https://www.encodeproject.org/files/ENCFF599OXB/@@download/ENCFF599OXB.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF038ZTJ bigBed narrowPeak replicated peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF326WDT 3033634 ENCODE Processing Pipeline 38e6b131c584870c6efa94f2468ef302 https://www.encodeproject.org/files/ENCFF038ZTJ/@@download/ENCFF038ZTJ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF189CSX bam unfiltered alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF614SSQ 3381799472 ENCODE Processing Pipeline 644c62da20ca9519dbe2a675d2839826 https://www.encodeproject.org/files/ENCFF189CSX/@@download/ENCFF189CSX.bam mm10 released mild to moderate bottlenecking ENCFF083KQI bam unfiltered alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF991BUI 3410899245 ENCODE Processing Pipeline 34232a187d0ed28cfd24b95851820d31 https://www.encodeproject.org/files/ENCFF083KQI/@@download/ENCFF083KQI.bam mm10 released mild to moderate bottlenecking ENCFF201HRC bam alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF614SSQ 2402885445 ENCODE Processing Pipeline cf13a0e484075e09e4f3731f345ca1e3 https://www.encodeproject.org/files/ENCFF201HRC/@@download/ENCFF201HRC.bam mm10 released mild to moderate bottlenecking ENCFF530EYP bam alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF991BUI 2311189417 ENCODE Processing Pipeline e3da786d5fe9e9544d18a1d4926a701e https://www.encodeproject.org/files/ENCFF530EYP/@@download/ENCFF530EYP.bam mm10 released mild to moderate bottlenecking ENCFF720URJ bed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF201HRC 1993251 ENCODE Processing Pipeline c27446331b471d62dea34cf42b428243 https://www.encodeproject.org/files/ENCFF720URJ/@@download/ENCFF720URJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF389SPB bed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF530EYP, ENCFF741HOY 2201905 ENCODE Processing Pipeline 551f63e3c3b404225d204de56915d9aa https://www.encodeproject.org/files/ENCFF389SPB/@@download/ENCFF389SPB.bed.gz mm10 released mild to moderate bottlenecking ENCFF117BGA bed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF201HRC, ENCFF530EYP, ENCFF741HOY 2936570 ENCODE Processing Pipeline 4d9a2b83ba45f0963db8e9b9d08ec573 https://www.encodeproject.org/files/ENCFF117BGA/@@download/ENCFF117BGA.bed.gz mm10 released mild to moderate bottlenecking ENCFF597AOG bigBed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF389SPB 5910393 ENCODE Processing Pipeline cf786c12d16e0074beb0a4831b48b8ab https://www.encodeproject.org/files/ENCFF597AOG/@@download/ENCFF597AOG.bigBed mm10 released mild to moderate bottlenecking ENCFF107QZS bigBed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF720URJ 5432803 ENCODE Processing Pipeline 5ea19ab6120b8b59c619c9f179e2a6e6 https://www.encodeproject.org/files/ENCFF107QZS/@@download/ENCFF107QZS.bigBed mm10 released mild to moderate bottlenecking ENCFF836FVQ bigBed narrowPeak peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF117BGA 7533166 ENCODE Processing Pipeline aa54f2d2f8e2962276f10186cc82b464 https://www.encodeproject.org/files/ENCFF836FVQ/@@download/ENCFF836FVQ.bigBed mm10 released mild to moderate bottlenecking ENCFF687SUB bigWig signal p-value ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF530EYP, ENCFF741HOY 930979637 ENCODE Processing Pipeline f9c30d98534e9a1209a4a976e75ca8ea https://www.encodeproject.org/files/ENCFF687SUB/@@download/ENCFF687SUB.bigWig mm10 released mild to moderate bottlenecking ENCFF090HHJ bigWig signal p-value ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF201HRC 810138076 ENCODE Processing Pipeline dfb23f3e07b5322299fbab34d12fa60b https://www.encodeproject.org/files/ENCFF090HHJ/@@download/ENCFF090HHJ.bigWig mm10 released mild to moderate bottlenecking ENCFF033RMI bigWig signal p-value ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF201HRC, ENCFF530EYP, ENCFF741HOY 1399958338 ENCODE Processing Pipeline 7c2949c0ad4e2a7399b009e57aa5a610 https://www.encodeproject.org/files/ENCFF033RMI/@@download/ENCFF033RMI.bigWig mm10 released mild to moderate bottlenecking ENCFF288YPU bigWig fold change over control ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 ENCFF530EYP, ENCFF741HOY 950647572 ENCODE Processing Pipeline 02667304938b4aec5e9baa9347e6d1ce https://www.encodeproject.org/files/ENCFF288YPU/@@download/ENCFF288YPU.bigWig mm10 released mild to moderate bottlenecking ENCFF633RNL bigWig fold change over control ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 ENCFF104UXG, ENCFF201HRC 1030462623 ENCODE Processing Pipeline 095d4390ff57ddb1d5ba7f89e8529fd5 https://www.encodeproject.org/files/ENCFF633RNL/@@download/ENCFF633RNL.bigWig mm10 released mild to moderate bottlenecking ENCFF379MVJ bigWig fold change over control ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF104UXG, ENCFF201HRC, ENCFF530EYP, ENCFF741HOY 1815559091 ENCODE Processing Pipeline 32a78805c72e3e94bc21ae1291e20844 https://www.encodeproject.org/files/ENCFF379MVJ/@@download/ENCFF379MVJ.bigWig mm10 released mild to moderate bottlenecking ENCFF789KPT bigBed narrowPeak replicated peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF982CSM 3058405 ENCODE Processing Pipeline 6f0dfe578baae9dd08d7627dbd12f21d https://www.encodeproject.org/files/ENCFF789KPT/@@download/ENCFF789KPT.bigBed mm10 released mild to moderate bottlenecking ENCFF982CSM bed narrowPeak replicated peaks ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1, 2 ENCFF117BGA, ENCFF389SPB, ENCFF720URJ 1629625 ENCODE Processing Pipeline c6f4f1f1fcc715da5ac428535d33e114 https://www.encodeproject.org/files/ENCFF982CSM/@@download/ENCFF982CSM.bed.gz mm10 released mild to moderate bottlenecking ENCFF001HZC bigBed narrowPeak peaks ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUG 1244206 Barbara Wold, Caltech 0f58da8598bff9613dd9e178901f431a https://www.encodeproject.org/files/ENCFF001HZC/@@download/ENCFF001HZC.bigBed mm9 released control low read depth, low read depth ENCFF001HZD bigWig signal ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZE 132972705 Barbara Wold, Caltech 21aebbe8498b7f10ed887f69b208c5a9 https://www.encodeproject.org/files/ENCFF001HZD/@@download/ENCFF001HZD.bigWig mm9 released control low read depth, low read depth ENCFF001HZE bam alignments ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IAC 1004572217 Barbara Wold, Caltech ffb91abfd472a70d4a8b8fa4b1e1b498 https://www.encodeproject.org/files/ENCFF001HZE/@@download/ENCFF001HZE.bam mm9 released control low read depth, low read depth ENCFF001IAC fastq reads ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 1029237888 Barbara Wold, Caltech cfd4c80b363e2b8b597ba4930ee6cf71 https://www.encodeproject.org/files/ENCFF001IAC/@@download/ENCFF001IAC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released control low read depth, low read depth ENCFF001XUG bed narrowPeak peaks ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZE 691865 Barbara Wold, Caltech 14d4442ea93e33b1e3ce278979a2fcc2 https://www.encodeproject.org/files/ENCFF001XUG/@@download/ENCFF001XUG.bed.gz mm9 released control low read depth, low read depth ENCFF720RPW bam unfiltered alignments ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAC, ENCFF018NEO 1042790085 ENCODE Processing Pipeline 6da4d19ebe22d1af95fd47933633627c https://www.encodeproject.org/files/ENCFF720RPW/@@download/ENCFF720RPW.bam mm10 released control low read depth, low read depth ENCFF190AAQ bam alignments ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAC, ENCFF018NEO 823414562 ENCODE Processing Pipeline f66158877b64e22b998824b9e2221b0a https://www.encodeproject.org/files/ENCFF190AAQ/@@download/ENCFF190AAQ.bam mm10 released control low read depth, low read depth ENCFF767EEB bigBed narrowPeak peaks ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF713OPV 4952696 ENCODE Processing Pipeline 1cfd32d2692e111f0fa12e7b88d9e6c4 https://www.encodeproject.org/files/ENCFF767EEB/@@download/ENCFF767EEB.bigBed mm10 released control low read depth, low read depth ENCFF649WSP bigWig signal p-value ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF190AAQ, ENCFF993HAY 302018520 ENCODE Processing Pipeline 9e1e0d34eec5dfa091977a58b357825e https://www.encodeproject.org/files/ENCFF649WSP/@@download/ENCFF649WSP.bigWig mm10 released control low read depth, low read depth ENCFF713OPV bed narrowPeak peaks ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF190AAQ, ENCFF993HAY 1704184 ENCODE Processing Pipeline 4c5306e400b272f5f2bc11da55f0073b https://www.encodeproject.org/files/ENCFF713OPV/@@download/ENCFF713OPV.bed.gz mm10 released control low read depth, low read depth ENCFF245DME bigWig fold change over control ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF190AAQ, ENCFF993HAY 236838984 ENCODE Processing Pipeline 800da64a4b6330d469dbe253fdbffefe https://www.encodeproject.org/files/ENCFF245DME/@@download/ENCFF245DME.bigWig mm10 released control low read depth, low read depth ENCFF230CYN bigBed narrowPeak stable peaks ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF338AZC 3557085 ENCODE Processing Pipeline f975a9a43541bf7dd1821cadddeec580 https://www.encodeproject.org/files/ENCFF230CYN/@@download/ENCFF230CYN.bigBed mm10 released control low read depth, low read depth ENCFF338AZC bed narrowPeak stable peaks ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF713OPV 1647999 ENCODE Processing Pipeline 3109e3018c4aa32ba39b4772851b6e20 https://www.encodeproject.org/files/ENCFF338AZC/@@download/ENCFF338AZC.bed.gz mm10 released control low read depth, low read depth ENCFF001MMY bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MNC 1795196070 Ross Hardison, PennState 24a34c8ad88b4e4478b3fc26b6514d06 https://www.encodeproject.org/files/ENCFF001MMY/@@download/ENCFF001MMY.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMZ bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEQ 243579 Ross Hardison, PennState a13a2db1bc58a5cabb57ae18338f5506 https://www.encodeproject.org/files/ENCFF001MMZ/@@download/ENCFF001MMZ.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MNA bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MNL 6475020464 Ross Hardison, PennState b7c19a32e6fe1993793c2e524df79f5b https://www.encodeproject.org/files/ENCFF001MNA/@@download/ENCFF001MNA.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MNB bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 ENCFF001MNJ 5587631339 Ross Hardison, PennState e56be5dc3d6b7308e482d6d4da1d5ca6 https://www.encodeproject.org/files/ENCFF001MNB/@@download/ENCFF001MNB.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MNC fastq reads ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1419494061 Ross Hardison, PennState e9eb3ca9cd8b04af4776e4d11a5691c1 https://www.encodeproject.org/files/ENCFF001MNC/@@download/ENCFF001MNC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MMU/ released low read length, inconsistent platforms, mixed read lengths ENCFF001MND bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YER 173061 Ross Hardison, PennState 28ae39bf2df11078d79853e03d8eeb23 https://www.encodeproject.org/files/ENCFF001MND/@@download/ENCFF001MND.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MNE bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YES 213757 Ross Hardison, PennState 773f54eb9ff2815bffa199b96283c158 https://www.encodeproject.org/files/ENCFF001MNE/@@download/ENCFF001MNE.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MNF bigBed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 ENCFF001YET 245440 Ross Hardison, PennState 338d55c3245a2f23e01cbfc2f991b387 https://www.encodeproject.org/files/ENCFF001MNF/@@download/ENCFF001MNF.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MNG bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4662733362 Ross Hardison, PennState 7bfb7c156606b8920636821dd14269f6 https://www.encodeproject.org/files/ENCFF001MNG/@@download/ENCFF001MNG.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MNH bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5986041951 Ross Hardison, PennState 79e3930e0dfc09991678bca9421e9900 https://www.encodeproject.org/files/ENCFF001MNH/@@download/ENCFF001MNH.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MNI bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 5775715775 Ross Hardison, PennState cdbeeffaf589a1e3bd67432bb89af0b4 https://www.encodeproject.org/files/ENCFF001MNI/@@download/ENCFF001MNI.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MNJ fastq reads ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 55 single-ended 4875290074 Ross Hardison, PennState ee504f0add00cb01f9559122c27f9831 https://www.encodeproject.org/files/ENCFF001MNJ/@@download/ENCFF001MNJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001MNK bigWig signal ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 6641869504 Ross Hardison, PennState 2cd883cf410c787c08469e680add7079 https://www.encodeproject.org/files/ENCFF001MNK/@@download/ENCFF001MNK.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MNL fastq reads ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 5773488169 Ross Hardison, PennState 58444d05e92e8650890947ef9e882e88 https://www.encodeproject.org/files/ENCFF001MNL/@@download/ENCFF001MNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001YEQ bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 116714 Ross Hardison, PennState e2c2524b7e01de0b3d6b995b30f8a858 https://www.encodeproject.org/files/ENCFF001YEQ/@@download/ENCFF001YEQ.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YER bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 63926 Ross Hardison, PennState 47bac2c8f9de206766bb10ce85e92361 https://www.encodeproject.org/files/ENCFF001YER/@@download/ENCFF001YER.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YES bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 98850 Ross Hardison, PennState 68f1d7ad2801dfb7a868370a2fe146e6 https://www.encodeproject.org/files/ENCFF001YES/@@download/ENCFF001YES.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YET bed broadPeak peaks ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 1 111890 Ross Hardison, PennState 46aee6e9c7772ca6d389b1a773663c21 https://www.encodeproject.org/files/ENCFF001YET/@@download/ENCFF001YET.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF848KIX bam unfiltered alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MNL, ENCFF018NEO 5615389976 ENCODE Processing Pipeline df2ec4a91a33103a32f0ef93c18b1b74 https://www.encodeproject.org/files/ENCFF848KIX/@@download/ENCFF848KIX.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF483OWP bam unfiltered alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MNC, ENCFF018NEO 1897632029 ENCODE Processing Pipeline 630d0bf1522ee00212882642a1382705 https://www.encodeproject.org/files/ENCFF483OWP/@@download/ENCFF483OWP.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF351MTW bam unfiltered alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MNJ, ENCFF018NEO 4887627058 ENCODE Processing Pipeline 7b1068c72593982f85707427192827f6 https://www.encodeproject.org/files/ENCFF351MTW/@@download/ENCFF351MTW.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF465JRB bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MNC, ENCFF018NEO 1392899822 ENCODE Processing Pipeline 8dd163a10e4cf164b8ea5cf1cfbf8d67 https://www.encodeproject.org/files/ENCFF465JRB/@@download/ENCFF465JRB.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF805RXV bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MNJ, ENCFF018NEO 3454386114 ENCODE Processing Pipeline 3e56737ce6408a0b5f178c5d4d8cd17a https://www.encodeproject.org/files/ENCFF805RXV/@@download/ENCFF805RXV.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF826PSX bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MNL, ENCFF018NEO 3474373950 ENCODE Processing Pipeline faca4a6e77de7d6cbb9abc8de6a7f412 https://www.encodeproject.org/files/ENCFF826PSX/@@download/ENCFF826PSX.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF001LST bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LTF 281621714 Bing Ren, UCSD b33d542b605c21f22841308ae934f17c https://www.encodeproject.org/files/ENCFF001LST/@@download/ENCFF001LST.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LSW bigBed broadPeak peaks ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBE 633531 Bing Ren, UCSD 55ca3863ecc04b9d7efb2aa7b13643bb https://www.encodeproject.org/files/ENCFF001LSW/@@download/ENCFF001LSW.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LSY bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LTG 736800904 Bing Ren, UCSD 027793c56c06df1cfa5c18600263f3ac https://www.encodeproject.org/files/ENCFF001LSY/@@download/ENCFF001LSY.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LTB bigWig signal ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LST, ENCFF001LSY 65249261 Bing Ren, UCSD 1894edf7a0338c1b9b71a6e0b565d334 https://www.encodeproject.org/files/ENCFF001LTB/@@download/ENCFF001LTB.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LTF fastq reads ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 280421271 Bing Ren, UCSD 9b0813bea40144999f4aba6f2f2b10e2 https://www.encodeproject.org/files/ENCFF001LTF/@@download/ENCFF001LTF.fastq.gz Illumina Genome Analyzer II /files/ENCFF786ODW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LTG fastq reads ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 737402777 Bing Ren, UCSD dbf811d844e64ec9d460b0bdaa25abac https://www.encodeproject.org/files/ENCFF001LTG/@@download/ENCFF001LTG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001YBE bed broadPeak peaks ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LST, ENCFF001LSY 497306 Bing Ren, UCSD 98b652fd83d5bd6d58161679842911af https://www.encodeproject.org/files/ENCFF001YBE/@@download/ENCFF001YBE.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF680JXU bam unfiltered alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTG, ENCFF018NEO 774056190 ENCODE Processing Pipeline 2abb7f8da4ef40cea51423c5d4a80848 https://www.encodeproject.org/files/ENCFF680JXU/@@download/ENCFF680JXU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF419YGX bam unfiltered alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTF, ENCFF018NEO 300093533 ENCODE Processing Pipeline 1d9c2d75299399fd760ea74cf2c64676 https://www.encodeproject.org/files/ENCFF419YGX/@@download/ENCFF419YGX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF670HMJ bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTG, ENCFF018NEO 344478412 ENCODE Processing Pipeline 1deb1953f353f9ce994c66c74766293f https://www.encodeproject.org/files/ENCFF670HMJ/@@download/ENCFF670HMJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF359OGF bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTF, ENCFF018NEO 131584552 ENCODE Processing Pipeline 2695302c830392a04ca60085c410d673 https://www.encodeproject.org/files/ENCFF359OGF/@@download/ENCFF359OGF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001IHH bigBed narrowPeak peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVH 907443 Barbara Wold, Caltech 952270aeac27d799498babaaca95d4de https://www.encodeproject.org/files/ENCFF001IHH/@@download/ENCFF001IHH.bigBed mm9 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF001IHI fastq reads ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 1049096703 Barbara Wold, Caltech 846dcb76a1d781ff969c46df0491c37c https://www.encodeproject.org/files/ENCFF001IHI/@@download/ENCFF001IHI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF001IHJ fastq reads ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 714543991 Barbara Wold, Caltech 23fed2b339daaaaca52c7f1657c63ba5 https://www.encodeproject.org/files/ENCFF001IHJ/@@download/ENCFF001IHJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF001IHK bigWig signal ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHL 184235213 Barbara Wold, Caltech 15c440d35c4bf7168d6232aa955d9fba https://www.encodeproject.org/files/ENCFF001IHK/@@download/ENCFF001IHK.bigWig mm9 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF001IHL bam alignments ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHI, ENCFF001IHJ 1921369176 Barbara Wold, Caltech adb256dbb18cb4973863ae2528089b59 https://www.encodeproject.org/files/ENCFF001IHL/@@download/ENCFF001IHL.bam mm9 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF001XVH bed narrowPeak peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHL 485393 Barbara Wold, Caltech 8044f4d9aa21deaafa12e3289b98952f https://www.encodeproject.org/files/ENCFF001XVH/@@download/ENCFF001XVH.bed.gz mm9 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF622PRZ bam unfiltered alignments ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHI, ENCFF001IHJ, ENCFF018NEO 2013458289 ENCODE Processing Pipeline d1696720deca6df6e1fad7076fa86c0f https://www.encodeproject.org/files/ENCFF622PRZ/@@download/ENCFF622PRZ.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF770ANH bam alignments ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHI, ENCFF001IHJ, ENCFF018NEO 928256450 ENCODE Processing Pipeline 9c0dda646d1252e82b42c5570e0f20e4 https://www.encodeproject.org/files/ENCFF770ANH/@@download/ENCFF770ANH.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF779WLW bigWig fold change over control ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF770ANH 353354916 ENCODE Processing Pipeline 773d4df16f5cfb1245bd8709dfcf5f90 https://www.encodeproject.org/files/ENCFF779WLW/@@download/ENCFF779WLW.bigWig mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF658VXK bigWig signal p-value ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF770ANH 371085238 ENCODE Processing Pipeline f109e799943e19e73e127a35ecae240a https://www.encodeproject.org/files/ENCFF658VXK/@@download/ENCFF658VXK.bigWig mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF917XHU bed narrowPeak peaks and background as input for IDR ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF770ANH 5594775 ENCODE Processing Pipeline 61654e7f20f64994a21114e9931be74d https://www.encodeproject.org/files/ENCFF917XHU/@@download/ENCFF917XHU.bed.gz mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF103RLC bigBed narrowPeak peaks and background as input for IDR ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF917XHU 10804240 ENCODE Processing Pipeline eca5183b17b02bfde1933a3145577794 https://www.encodeproject.org/files/ENCFF103RLC/@@download/ENCFF103RLC.bigBed mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF937RNY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF153VDE 1523008 ENCODE Processing Pipeline b7df4389681df914f7b27167bba252d6 https://www.encodeproject.org/files/ENCFF937RNY/@@download/ENCFF937RNY.bigBed mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF153VDE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF917XHU 799927 ENCODE Processing Pipeline 95ed98ca05ef984ff639c8a7ae37a839 https://www.encodeproject.org/files/ENCFF153VDE/@@download/ENCFF153VDE.bed.gz mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF189NBW fastq reads ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1506266591 Bing Ren, UCSD 1c0ee9d25db71ac2da4ca2a93a6556e9 SRA:SRR3653284 https://www.encodeproject.org/files/ENCFF189NBW/@@download/ENCFF189NBW.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/, /files/ENCFF961WKK/ released mild to moderate bottlenecking ENCFF338GBK fastq reads ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1295951162 Bing Ren, UCSD 4dc5e6542c190d3ccff67ec5516452e8 SRA:SRR3653283 https://www.encodeproject.org/files/ENCFF338GBK/@@download/ENCFF338GBK.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released mild to moderate bottlenecking ENCFF890LCZ bam alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF338GBK, ENCFF806TVZ 1125158855 ENCODE Processing Pipeline 17c2dff67a38a764ed82c2a6581dc8ba https://www.encodeproject.org/files/ENCFF890LCZ/@@download/ENCFF890LCZ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF531LLH bam alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF189NBW, ENCFF806TVZ 1308264335 ENCODE Processing Pipeline 87656eb49d59ae73f7e97c2abb3a9023 https://www.encodeproject.org/files/ENCFF531LLH/@@download/ENCFF531LLH.bam mm10-minimal archived mild to moderate bottlenecking ENCFF153FDZ bed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF531LLH 553731 ENCODE Processing Pipeline 4268d4f3550810aa796b01a7491a9213 https://www.encodeproject.org/files/ENCFF153FDZ/@@download/ENCFF153FDZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF884JDU bed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF890LCZ 558731 ENCODE Processing Pipeline e43a6d7c26de4db31d15244d409e4d3d https://www.encodeproject.org/files/ENCFF884JDU/@@download/ENCFF884JDU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF904ZSP bigBed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF884JDU 1822126 ENCODE Processing Pipeline ac1f3b406599db69189994dd82b62d93 https://www.encodeproject.org/files/ENCFF904ZSP/@@download/ENCFF904ZSP.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF220VVE bed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF531LLH, ENCFF890LCZ 605977 ENCODE Processing Pipeline 04eb346c3dbc0fccdd1b824d11c6e21c https://www.encodeproject.org/files/ENCFF220VVE/@@download/ENCFF220VVE.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF199CAN bigWig signal p-value ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF890LCZ 558640508 ENCODE Processing Pipeline c64ef5eb5abbed7e231739c174ff6e14 https://www.encodeproject.org/files/ENCFF199CAN/@@download/ENCFF199CAN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF478XCS bigBed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF220VVE 1935839 ENCODE Processing Pipeline ff314bc8fc823a74c442a841fe79fe06 https://www.encodeproject.org/files/ENCFF478XCS/@@download/ENCFF478XCS.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF966MNW bigBed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF153FDZ 1823174 ENCODE Processing Pipeline 7f4d2adca2d14972c3c34ff03b98463c https://www.encodeproject.org/files/ENCFF966MNW/@@download/ENCFF966MNW.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF187PGR bigWig fold change over control ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF531LLH 585858121 ENCODE Processing Pipeline ca080660ee1f108169eec0ce76db62b0 https://www.encodeproject.org/files/ENCFF187PGR/@@download/ENCFF187PGR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF553MUB bigWig signal p-value ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF531LLH 530201963 ENCODE Processing Pipeline 75da3fc5d1f35e9698bd2753a2f86ccc https://www.encodeproject.org/files/ENCFF553MUB/@@download/ENCFF553MUB.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF322CTJ bigWig signal p-value ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF531LLH, ENCFF890LCZ 932072369 ENCODE Processing Pipeline dbb67031e3b106712cb57756e9fbfca5 https://www.encodeproject.org/files/ENCFF322CTJ/@@download/ENCFF322CTJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF561RIJ bigWig fold change over control ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF890LCZ 516709823 ENCODE Processing Pipeline d584c2716c61b7573aebd48d63775215 https://www.encodeproject.org/files/ENCFF561RIJ/@@download/ENCFF561RIJ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF851FLS bigWig fold change over control ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF531LLH, ENCFF890LCZ 987946989 ENCODE Processing Pipeline 87b5c73a8ff7da9e96cf31a40dcb5f39 https://www.encodeproject.org/files/ENCFF851FLS/@@download/ENCFF851FLS.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF801IOE bigBed narrowPeak replicated peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF084SQO 1611298 ENCODE Processing Pipeline 966c73f6fa1a46255748df7cd3bf7b75 https://www.encodeproject.org/files/ENCFF801IOE/@@download/ENCFF801IOE.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF084SQO bed narrowPeak replicated peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF153FDZ, ENCFF220VVE, ENCFF884JDU 649697 ENCODE Processing Pipeline c429067e833475396351688c3d458ca5 https://www.encodeproject.org/files/ENCFF084SQO/@@download/ENCFF084SQO.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF309FWQ bam unfiltered alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF189NBW 1873083871 ENCODE Processing Pipeline d319a7f548c2a97dfeab2d112ec83c5c https://www.encodeproject.org/files/ENCFF309FWQ/@@download/ENCFF309FWQ.bam mm10 released mild to moderate bottlenecking ENCFF796VLK bam alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF338GBK 1124931771 ENCODE Processing Pipeline 64d1732276b3f14f7d0db9dbff4e17bc https://www.encodeproject.org/files/ENCFF796VLK/@@download/ENCFF796VLK.bam mm10 released mild to moderate bottlenecking ENCFF033BAT bam alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF189NBW 1307997737 ENCODE Processing Pipeline 29ae8a1302cd7648e424ea0feb243ea8 https://www.encodeproject.org/files/ENCFF033BAT/@@download/ENCFF033BAT.bam mm10 released mild to moderate bottlenecking ENCFF906HSM bam unfiltered alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF338GBK 1604337786 ENCODE Processing Pipeline fc525bfa1d0047cdb2f3636e7b92ffef https://www.encodeproject.org/files/ENCFF906HSM/@@download/ENCFF906HSM.bam mm10 released mild to moderate bottlenecking ENCFF066YYX bed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF033BAT, ENCFF570IJH 552239 ENCODE Processing Pipeline bc64a26576e39a5215d5307b9891e46e https://www.encodeproject.org/files/ENCFF066YYX/@@download/ENCFF066YYX.bed.gz mm10 released mild to moderate bottlenecking ENCFF695VSR bed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF796VLK 559195 ENCODE Processing Pipeline 728908d887c2dffff65bc87e0ac26457 https://www.encodeproject.org/files/ENCFF695VSR/@@download/ENCFF695VSR.bed.gz mm10 released mild to moderate bottlenecking ENCFF599YDJ bed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF033BAT, ENCFF387WDC, ENCFF570IJH, ENCFF796VLK 619835 ENCODE Processing Pipeline 82900af3262e354444505ab2323ef8bd https://www.encodeproject.org/files/ENCFF599YDJ/@@download/ENCFF599YDJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF756RIL bigBed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF066YYX 1812740 ENCODE Processing Pipeline c5983dbb8c9d5c280d1644a73752aab2 https://www.encodeproject.org/files/ENCFF756RIL/@@download/ENCFF756RIL.bigBed mm10 released mild to moderate bottlenecking ENCFF690WAL bigBed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF695VSR 1824915 ENCODE Processing Pipeline 280512938eba30a1b3e11cdaa0a71299 https://www.encodeproject.org/files/ENCFF690WAL/@@download/ENCFF690WAL.bigBed mm10 released mild to moderate bottlenecking ENCFF635VHQ bigBed narrowPeak peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF599YDJ 1966205 ENCODE Processing Pipeline 06b5e8c914a5cb7116cbb53cfd7a11a7 https://www.encodeproject.org/files/ENCFF635VHQ/@@download/ENCFF635VHQ.bigBed mm10 released mild to moderate bottlenecking ENCFF788VTA bigWig signal p-value ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF033BAT, ENCFF570IJH 493422555 ENCODE Processing Pipeline fa83b68b142a0624ee95d6000b6f833b https://www.encodeproject.org/files/ENCFF788VTA/@@download/ENCFF788VTA.bigWig mm10 released mild to moderate bottlenecking ENCFF554SQK bigWig signal p-value ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF796VLK 604199827 ENCODE Processing Pipeline 122a0b285b090d7ae82796948c6f19b4 https://www.encodeproject.org/files/ENCFF554SQK/@@download/ENCFF554SQK.bigWig mm10 released mild to moderate bottlenecking ENCFF742EDR bigWig signal p-value ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF033BAT, ENCFF387WDC, ENCFF570IJH, ENCFF796VLK 923544613 ENCODE Processing Pipeline 8fe179f41c3fdf4fb0ccae1f66a612bb https://www.encodeproject.org/files/ENCFF742EDR/@@download/ENCFF742EDR.bigWig mm10 released mild to moderate bottlenecking ENCFF882BKV bigWig fold change over control ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF033BAT, ENCFF570IJH 537482407 ENCODE Processing Pipeline 03a763ad94fc3345586cd980f1089bcb https://www.encodeproject.org/files/ENCFF882BKV/@@download/ENCFF882BKV.bigWig mm10 released mild to moderate bottlenecking ENCFF580OGQ bigWig fold change over control ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF796VLK 516259338 ENCODE Processing Pipeline f83603110e5e2307c69d249fb15403b2 https://www.encodeproject.org/files/ENCFF580OGQ/@@download/ENCFF580OGQ.bigWig mm10 released mild to moderate bottlenecking ENCFF840MYF bigWig fold change over control ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF033BAT, ENCFF387WDC, ENCFF570IJH, ENCFF796VLK 1028205111 ENCODE Processing Pipeline 389cf4736acc3142c58d10f4d3f61668 https://www.encodeproject.org/files/ENCFF840MYF/@@download/ENCFF840MYF.bigWig mm10 released mild to moderate bottlenecking ENCFF852KYV bed narrowPeak replicated peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF066YYX, ENCFF599YDJ, ENCFF695VSR 655492 ENCODE Processing Pipeline 53b326d41f8f33611f6db0ce0e52fc1e https://www.encodeproject.org/files/ENCFF852KYV/@@download/ENCFF852KYV.bed.gz mm10 released mild to moderate bottlenecking ENCFF025FWZ bigBed narrowPeak replicated peaks ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF852KYV 1610853 ENCODE Processing Pipeline b29d15bc13ec5e969c03b95dc07def98 https://www.encodeproject.org/files/ENCFF025FWZ/@@download/ENCFF025FWZ.bigBed mm10 released mild to moderate bottlenecking ENCFF001IEM bam alignments ENCSR000AJT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2012-05-11 ENCODE 1 ENCFF001IEU 1204420364 Barbara Wold, Caltech 6a9ad5553c830c8f4d52d538f89de349 https://www.encodeproject.org/files/ENCFF001IEM/@@download/ENCFF001IEM.bam mm9 released low read length, low read depth ENCFF001IEO bigWig signal ENCSR000AJT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2012-05-11 ENCODE 1 1 ENCFF001IEM 147606733 Barbara Wold, Caltech 5b7d880eab5015bb106ea672e4d1492a https://www.encodeproject.org/files/ENCFF001IEO/@@download/ENCFF001IEO.bigWig mm9 released low read length, low read depth ENCFF001IEU fastq reads ENCSR000AJT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2012-05-11 ENCODE 1 1 36 single-ended 969237061 Barbara Wold, Caltech 3c962722d1d865e3b5357ed9430e49f4 https://www.encodeproject.org/files/ENCFF001IEU/@@download/ENCFF001IEU.fastq.gz Illumina Genome Analyzer II released low read length, low read depth ENCFF168SDD bam unfiltered alignments ENCSR000AJT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2012-05-11 ENCODE 1 36 ENCFF001IEU, ENCFF018NEO 1318406187 ENCODE Processing Pipeline 81b0eb02e453dafcc2e4535520dd7102 https://www.encodeproject.org/files/ENCFF168SDD/@@download/ENCFF168SDD.bam mm10 released low read length, low read depth ENCFF980ZBF bam alignments ENCSR000AJT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2012-05-11 ENCODE 1 36 ENCFF001IEU, ENCFF018NEO 837118314 ENCODE Processing Pipeline 3c971f7922ef5b061a1db853d8f9451d https://www.encodeproject.org/files/ENCFF980ZBF/@@download/ENCFF980ZBF.bam mm10 released low read length, low read depth ENCFF001ICS bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001ICX 1150640389 Barbara Wold, Caltech 5da2e6f49a64501a355c5c0d516b4616 https://www.encodeproject.org/files/ENCFF001ICS/@@download/ENCFF001ICS.bam mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICT bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF001IDC 1043094361 Barbara Wold, Caltech 243fea0f930c4cba1ff53e9af9484d69 https://www.encodeproject.org/files/ENCFF001ICT/@@download/ENCFF001ICT.bam mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICU bigBed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUS 250153 Barbara Wold, Caltech 40fcfc92fae77810c87d6a4d90cdff56 https://www.encodeproject.org/files/ENCFF001ICU/@@download/ENCFF001ICU.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICV bigBed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 ENCFF001XUR 234485 Barbara Wold, Caltech e079e1d9b24de902d366c9649fcf98f3 https://www.encodeproject.org/files/ENCFF001ICV/@@download/ENCFF001ICV.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICX fastq reads ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1240921929 Barbara Wold, Caltech dfd51e8b8085f88f932fb39a06ef0104 https://www.encodeproject.org/files/ENCFF001ICX/@@download/ENCFF001ICX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICY bigWig signal ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001ICS 81168122 Barbara Wold, Caltech 9785cfe60211bdc2b53789e6ae286c4b https://www.encodeproject.org/files/ENCFF001ICY/@@download/ENCFF001ICY.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001ICZ bigWig signal ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 ENCFF001ICT 82713070 Barbara Wold, Caltech 2803e0334bcd717e0eb8bc22d1bd1e82 https://www.encodeproject.org/files/ENCFF001ICZ/@@download/ENCFF001ICZ.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IDC fastq reads ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 50 single-ended 1063634878 Barbara Wold, Caltech b892c626867f7786070f89cced35838e https://www.encodeproject.org/files/ENCFF001IDC/@@download/ENCFF001IDC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEZ/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XUR bed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 1 ENCFF001ICT 121690 Barbara Wold, Caltech 8a2cc7c85dcf2f32b0afaba99ea2daa9 https://www.encodeproject.org/files/ENCFF001XUR/@@download/ENCFF001XUR.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XUS bed narrowPeak peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001ICS 130452 Barbara Wold, Caltech 4f0b932ff5d9c1b878af9862f9e722be https://www.encodeproject.org/files/ENCFF001XUS/@@download/ENCFF001XUS.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF604PHR bam unfiltered alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IDC, ENCFF018NEO 1097643069 ENCODE Processing Pipeline 9d32ff7e4b1d4979ef9fe97d3acbc064 https://www.encodeproject.org/files/ENCFF604PHR/@@download/ENCFF604PHR.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF893WUP bam unfiltered alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001ICX, ENCFF018NEO 1209007826 ENCODE Processing Pipeline 8e8999ef78d25d5b93f852c654126d0b https://www.encodeproject.org/files/ENCFF893WUP/@@download/ENCFF893WUP.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF905YWG bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001ICX, ENCFF018NEO 452391859 ENCODE Processing Pipeline ff1f81ad9b9f53cea1c356ce05020d53 https://www.encodeproject.org/files/ENCFF905YWG/@@download/ENCFF905YWG.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF307YNO bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IDC, ENCFF018NEO 557062983 ENCODE Processing Pipeline 8343fb22ba8ad20ee322754e4eec2f7a https://www.encodeproject.org/files/ENCFF307YNO/@@download/ENCFF307YNO.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF443KXE bigWig fold change over control ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF290FPB, ENCFF307YNO, ENCFF993HAY 253574169 ENCODE Processing Pipeline 3e443560360302d6cd9a96bd6757cecb https://www.encodeproject.org/files/ENCFF443KXE/@@download/ENCFF443KXE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF384DTJ bigWig fold change over control ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF290FPB, ENCFF905YWG, ENCFF993HAY 219576952 ENCODE Processing Pipeline 0303634021fbb2bd85182f34d0dbb9d3 https://www.encodeproject.org/files/ENCFF384DTJ/@@download/ENCFF384DTJ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF042VSD bed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF290FPB, ENCFF307YNO, ENCFF905YWG, ENCFF993HAY 4945689 ENCODE Processing Pipeline 64f229703430b660715be9cb7b0059f5 https://www.encodeproject.org/files/ENCFF042VSD/@@download/ENCFF042VSD.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF742XUO bigWig signal p-value ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF290FPB, ENCFF905YWG, ENCFF993HAY 513846831 ENCODE Processing Pipeline a82fc2a3932628fba10f622c969a5be0 https://www.encodeproject.org/files/ENCFF742XUO/@@download/ENCFF742XUO.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF681SEZ bigWig signal p-value ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF290FPB, ENCFF307YNO, ENCFF905YWG, ENCFF993HAY 479343337 ENCODE Processing Pipeline aa3a47e4ca2fb2845274d2c402d98866 https://www.encodeproject.org/files/ENCFF681SEZ/@@download/ENCFF681SEZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF255COK bed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF290FPB, ENCFF905YWG, ENCFF993HAY 3857327 ENCODE Processing Pipeline 3b97618fd2d6a552319ebe7ea7304e74 https://www.encodeproject.org/files/ENCFF255COK/@@download/ENCFF255COK.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF980ZHP bed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF290FPB, ENCFF307YNO, ENCFF993HAY 4464504 ENCODE Processing Pipeline b24449f903fd8db7c0e44dbf37a4e907 https://www.encodeproject.org/files/ENCFF980ZHP/@@download/ENCFF980ZHP.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF986QOL bed narrowPeak optimal idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF042VSD, ENCFF255COK, ENCFF547MET, ENCFF980ZHP 276403 ENCODE Processing Pipeline 8cd66cd28d12f9821022575c15716172 https://www.encodeproject.org/files/ENCFF986QOL/@@download/ENCFF986QOL.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF497BVP bigWig signal p-value ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF290FPB, ENCFF307YNO, ENCFF993HAY 371667806 ENCODE Processing Pipeline 02333a23afd25d668734025c2e85ba48 https://www.encodeproject.org/files/ENCFF497BVP/@@download/ENCFF497BVP.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF608CCM bed narrowPeak conservative idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF042VSD, ENCFF255COK, ENCFF547MET, ENCFF980ZHP 248132 ENCODE Processing Pipeline 9844d803b40d05684ac0c0ed7a40d6e7 https://www.encodeproject.org/files/ENCFF608CCM/@@download/ENCFF608CCM.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF096FAR bigWig fold change over control ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF290FPB, ENCFF307YNO, ENCFF905YWG, ENCFF993HAY 410770167 ENCODE Processing Pipeline 7da69f7e51cade102bc4069eb3178b33 https://www.encodeproject.org/files/ENCFF096FAR/@@download/ENCFF096FAR.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF318ENJ bigBed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF042VSD 11184295 ENCODE Processing Pipeline d94654178b55dfb20d8f39899eb766df https://www.encodeproject.org/files/ENCFF318ENJ/@@download/ENCFF318ENJ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF665GFP bigBed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF255COK 8174343 ENCODE Processing Pipeline 823792dd10f9d7fcddad99cbe135b1db https://www.encodeproject.org/files/ENCFF665GFP/@@download/ENCFF665GFP.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF941IIZ bigBed narrowPeak peaks and background as input for IDR ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 ENCFF980ZHP 10604512 ENCODE Processing Pipeline 79d401bbbb753716fceef8797ccf52e7 https://www.encodeproject.org/files/ENCFF941IIZ/@@download/ENCFF941IIZ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF411VYH bigBed narrowPeak conservative idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF608CCM 524652 ENCODE Processing Pipeline 9b0d23a6e4ee2e9efdd1550b969d1dde https://www.encodeproject.org/files/ENCFF411VYH/@@download/ENCFF411VYH.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF495YGU bigBed narrowPeak optimal idr thresholded peaks ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1, 2 ENCFF986QOL 567475 ENCODE Processing Pipeline b80befdad8d3cb499662fb97f2c03721 https://www.encodeproject.org/files/ENCFF495YGU/@@download/ENCFF495YGU.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IEP bam alignments ENCSR000AJO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-23 ENCODE 1 ENCFF001IEV 1426200917 Barbara Wold, Caltech 41b2a554e8048790108b64f2ea645860 https://www.encodeproject.org/files/ENCFF001IEP/@@download/ENCFF001IEP.bam mm9 released low read length insufficient read depth for broad peaks control ENCFF001IEQ bigWig signal ENCSR000AJO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-23 ENCODE 1 1 ENCFF001IEP 159609320 Barbara Wold, Caltech 537dc35f41ca00a3418d7aa68187542e https://www.encodeproject.org/files/ENCFF001IEQ/@@download/ENCFF001IEQ.bigWig mm9 released low read length insufficient read depth for broad peaks control ENCFF001IEV fastq reads ENCSR000AJO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-23 ENCODE 1 1 36 single-ended 1161072132 Barbara Wold, Caltech 893887c61424c2e1ec8ecee617fefa33 https://www.encodeproject.org/files/ENCFF001IEV/@@download/ENCFF001IEV.fastq.gz Illumina Genome Analyzer II released low read length insufficient read depth for broad peaks control ENCFF251BUB bam unfiltered alignments ENCSR000AJO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-23 ENCODE 1 ENCFF001IEV, ENCFF806TVZ 1553054264 J. Michael Cherry, Stanford 5b1ffaea89532e85cf19b9a77e60f108 https://www.encodeproject.org/files/ENCFF251BUB/@@download/ENCFF251BUB.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF610YTA bam unfiltered alignments ENCSR000AJO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-23 ENCODE 1 36 ENCFF001IEV, ENCFF018NEO 1555180694 ENCODE Processing Pipeline 55265c8ffca538a0a0fa7d6a084c871d https://www.encodeproject.org/files/ENCFF610YTA/@@download/ENCFF610YTA.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF940VSO bam alignments ENCSR000AJO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-23 ENCODE 1 36 ENCFF001IEV, ENCFF018NEO 940604394 ENCODE Processing Pipeline 6aa5d89a36210a89155ea06581baf4f0 https://www.encodeproject.org/files/ENCFF940VSO/@@download/ENCFF940VSO.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF001IFF bam alignments ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IGF 1152923923 Barbara Wold, Caltech 8e92bb624def14e766fd014553317c8b https://www.encodeproject.org/files/ENCFF001IFF/@@download/ENCFF001IFF.bam mm9 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IFG bigBed narrowPeak peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUX 117975 Barbara Wold, Caltech 7a79a59eb8df0de64035fb0b7c7b05f5 https://www.encodeproject.org/files/ENCFF001IFG/@@download/ENCFF001IFG.bigBed mm9 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IFH bigWig signal ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFF 110669147 Barbara Wold, Caltech 9cb8331f243ca4f1c9a8497539f14d1c https://www.encodeproject.org/files/ENCFF001IFH/@@download/ENCFF001IFH.bigWig mm9 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IGF fastq reads ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1131571291 Barbara Wold, Caltech 692b6156dd527c2bb75f6a8ac82cc030 https://www.encodeproject.org/files/ENCFF001IGF/@@download/ENCFF001IGF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released mild to moderate bottlenecking, control low read depth, low read depth ENCFF001XUX bed narrowPeak peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IFF 37019 Barbara Wold, Caltech f67b20767430c21d35a53a7dfc890630 https://www.encodeproject.org/files/ENCFF001XUX/@@download/ENCFF001XUX.bed.gz mm9 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF539VUI bam unfiltered alignments ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IGF, ENCFF018NEO 1220676108 ENCODE Processing Pipeline 2f08ef52ad45b4a065a374463b8c409a https://www.encodeproject.org/files/ENCFF539VUI/@@download/ENCFF539VUI.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF147NVK bam alignments ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IGF, ENCFF018NEO 764869572 ENCODE Processing Pipeline 0dd1a4fe44f1ae59300f4f2ea4654aec https://www.encodeproject.org/files/ENCFF147NVK/@@download/ENCFF147NVK.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF720ENE bigWig signal p-value ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF147NVK, ENCFF993HAY 319063913 ENCODE Processing Pipeline a9978eb3389ecef1e9440bc077ae4a0a https://www.encodeproject.org/files/ENCFF720ENE/@@download/ENCFF720ENE.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF595PRV bigWig fold change over control ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF147NVK, ENCFF993HAY 240725608 ENCODE Processing Pipeline f678bff89baf89da8b6efe6f9ccf4336 https://www.encodeproject.org/files/ENCFF595PRV/@@download/ENCFF595PRV.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF706VAZ bed narrowPeak peaks and background as input for IDR ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF147NVK, ENCFF993HAY 3863797 ENCODE Processing Pipeline 3cb709b2752668bad55c4e55e5e33c2f https://www.encodeproject.org/files/ENCFF706VAZ/@@download/ENCFF706VAZ.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF116EOG bigBed narrowPeak peaks and background as input for IDR ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF706VAZ 7921521 ENCODE Processing Pipeline 2f49dd68273204e4a3c3bb7cbf012f1c https://www.encodeproject.org/files/ENCFF116EOG/@@download/ENCFF116EOG.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF737UZJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF706VAZ 52820 ENCODE Processing Pipeline 03d086121cebc5a68f885c2a1507d751 https://www.encodeproject.org/files/ENCFF737UZJ/@@download/ENCFF737UZJ.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF228VQE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF737UZJ 142182 ENCODE Processing Pipeline e62ab177430abb7fc431dc4630081ca1 https://www.encodeproject.org/files/ENCFF228VQE/@@download/ENCFF228VQE.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF001NCM bigWig signal ENCSR000AHI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001NCO 244090260 Sherman Weissman, Yale b2b3b19c63bdb67a83345b118bed4088 https://www.encodeproject.org/files/ENCFF001NCM/@@download/ENCFF001NCM.bigWig mm9 archived low read length ENCFF001NCO bam alignments ENCSR000AHI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001NDX 705085104 Sherman Weissman, Yale 5714d286b5173e3591a89cefcb0a073d https://www.encodeproject.org/files/ENCFF001NCO/@@download/ENCFF001NCO.bam mm9 archived low read length ENCFF001NDX fastq reads ENCSR000AHI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 2138680522 Sherman Weissman, Yale eabcf2edd72c69edd067cc5f10446ec8 https://www.encodeproject.org/files/ENCFF001NDX/@@download/ENCFF001NDX.fastq.gz Illumina Genome Analyzer II archived low read length ENCFF001IAE bigBed narrowPeak peaks ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUM 467553 Barbara Wold, Caltech 7e6b4df49e119e0f323f65868d0f3be6 https://www.encodeproject.org/files/ENCFF001IAE/@@download/ENCFF001IAE.bigBed mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IAF bigWig signal ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAH 76332285 Barbara Wold, Caltech 34eae46df4595ae34fa631d42ff02347 https://www.encodeproject.org/files/ENCFF001IAF/@@download/ENCFF001IAF.bigWig mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IAH bam alignments ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IBG 1580877516 Barbara Wold, Caltech 769a835cd9ddb56f4ee73f5ca908df7e https://www.encodeproject.org/files/ENCFF001IAH/@@download/ENCFF001IAH.bam mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IBG fastq reads ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 1787071362 Barbara Wold, Caltech 3e1229f2e79642faa8c842636630f8fc https://www.encodeproject.org/files/ENCFF001IBG/@@download/ENCFF001IBG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XUM bed narrowPeak peaks ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAH 247041 Barbara Wold, Caltech 4edb423f3e32262ed7ab60d402701dc7 https://www.encodeproject.org/files/ENCFF001XUM/@@download/ENCFF001XUM.bed.gz mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF491NWG bam unfiltered alignments ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBG, ENCFF018NEO 1626756492 ENCODE Processing Pipeline b70012991ce52a7a02ee9cc6c1e4db70 https://www.encodeproject.org/files/ENCFF491NWG/@@download/ENCFF491NWG.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF137QVL bam alignments ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBG, ENCFF018NEO 387554274 ENCODE Processing Pipeline 694f74af6cdf9ecb65f9af4236493553 https://www.encodeproject.org/files/ENCFF137QVL/@@download/ENCFF137QVL.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF269RFM bigBed narrowPeak peaks ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF059BLG 4192026 ENCODE Processing Pipeline a73ec1d7e6bd806338eab044443fa0ca https://www.encodeproject.org/files/ENCFF269RFM/@@download/ENCFF269RFM.bigBed mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF059BLG bed narrowPeak peaks ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF137QVL, ENCFF875IDP 2058555 ENCODE Processing Pipeline 4e9da51b2ec7728ca0526a1befc90c8c https://www.encodeproject.org/files/ENCFF059BLG/@@download/ENCFF059BLG.bed.gz mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF494JHN bigWig signal p-value ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF137QVL, ENCFF875IDP 241727730 ENCODE Processing Pipeline 54890e0e161f3a5f89eb87cb7955a0e8 https://www.encodeproject.org/files/ENCFF494JHN/@@download/ENCFF494JHN.bigWig mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF360QRN bed narrowPeak stable peaks ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF059BLG 1198515 ENCODE Processing Pipeline 79aaeeaf3faf360a44ec7deba04adbec https://www.encodeproject.org/files/ENCFF360QRN/@@download/ENCFF360QRN.bed.gz mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF436ZSV bigWig fold change over control ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF137QVL, ENCFF875IDP 105377483 ENCODE Processing Pipeline 4a1f1132896e971079fc99706eae9f1f https://www.encodeproject.org/files/ENCFF436ZSV/@@download/ENCFF436ZSV.bigWig mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF799AHJ bigBed narrowPeak stable peaks ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF360QRN 2239419 ENCODE Processing Pipeline ee22cde910832d06939285f2b89bc036 https://www.encodeproject.org/files/ENCFF799AHJ/@@download/ENCFF799AHJ.bigBed mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001LRV bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LSK 884604125 Bing Ren, UCSD 6afa217a5b1f59d4fc74c5b7899fff60 https://www.encodeproject.org/files/ENCFF001LRV/@@download/ENCFF001LRV.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF001LRZ bigBed broadPeak peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBB 441112 Bing Ren, UCSD ca22481bc24fb654a589b1d2fce98cf2 https://www.encodeproject.org/files/ENCFF001LRZ/@@download/ENCFF001LRZ.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF001LSA bigWig signal ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRV, ENCFF001LSB 67574229 Bing Ren, UCSD e924cce0b6291a091cd47c149101c753 https://www.encodeproject.org/files/ENCFF001LSA/@@download/ENCFF001LSA.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF001LSB bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LSN 756669983 Bing Ren, UCSD 7b18b13cc3b36de5be314fd9ff2102d5 https://www.encodeproject.org/files/ENCFF001LSB/@@download/ENCFF001LSB.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF001LSK fastq reads ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 827841808 Bing Ren, UCSD e508cb94c1508ad0036d8d9767ff4590 https://www.encodeproject.org/files/ENCFF001LSK/@@download/ENCFF001LSK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KXE/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF001LSN fastq reads ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1108138658 Bing Ren, UCSD 92087c74e50a02f293e09177a1c8c427 https://www.encodeproject.org/files/ENCFF001LSN/@@download/ENCFF001LSN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF001YBB bed broadPeak peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRV, ENCFF001LSB 322022 Bing Ren, UCSD 2cecd7f42a51fbe4b105c08a6e1f8c05 https://www.encodeproject.org/files/ENCFF001YBB/@@download/ENCFF001YBB.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF334SVH bam unfiltered alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSK, ENCFF018NEO 925847147 ENCODE Processing Pipeline 9e5cdaaee8b12192b1595a60de486476 https://www.encodeproject.org/files/ENCFF334SVH/@@download/ENCFF334SVH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF435RFZ bam unfiltered alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSN, ENCFF018NEO 1154374709 ENCODE Processing Pipeline 626c8294c14a372179568878e0d89fa4 https://www.encodeproject.org/files/ENCFF435RFZ/@@download/ENCFF435RFZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF998UML bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSK, ENCFF018NEO 560825794 ENCODE Processing Pipeline 20194d266192acaa9963175bd50d390a https://www.encodeproject.org/files/ENCFF998UML/@@download/ENCFF998UML.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF748PAR bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSN, ENCFF018NEO 544126312 ENCODE Processing Pipeline 860d2d16bc7a0defafb5df1bef72e4b9 https://www.encodeproject.org/files/ENCFF748PAR/@@download/ENCFF748PAR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF781OXC bigBed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF864LRN 10198427 ENCODE Processing Pipeline 96427bd95eb49ca9a3a1ff15925070ec https://www.encodeproject.org/files/ENCFF781OXC/@@download/ENCFF781OXC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF721LCP bigWig fold change over control ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC 220228985 ENCODE Processing Pipeline 682d45b075bb88d783c352f6b8b45c9b https://www.encodeproject.org/files/ENCFF721LCP/@@download/ENCFF721LCP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF390HUU bed narrowPeak conservative idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF198QXS, ENCFF547MET, ENCFF590QKD, ENCFF864LRN 265026 ENCODE Processing Pipeline 098b59cae5f442c597c33d539566a41d https://www.encodeproject.org/files/ENCFF390HUU/@@download/ENCFF390HUU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF869DEH bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF390HUU 598049 ENCODE Processing Pipeline 25db74823207bb638ef776d4d4b4204a https://www.encodeproject.org/files/ENCFF869DEH/@@download/ENCFF869DEH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF480JJP bigWig signal p-value ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC, ENCFF998UML 183495391 ENCODE Processing Pipeline d672d6ae72393c369fa1fdc03b19953d https://www.encodeproject.org/files/ENCFF480JJP/@@download/ENCFF480JJP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF552FRY bigWig fold change over control ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF942MHC, ENCFF998UML 177794767 ENCODE Processing Pipeline d6dfe9ff6e68e4a61aacfc4b04daccaa https://www.encodeproject.org/files/ENCFF552FRY/@@download/ENCFF552FRY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF817PEL bigWig signal p-value ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF942MHC, ENCFF998UML 194093132 ENCODE Processing Pipeline 472cf3650d2245b07f4d24ae7d1d55aa https://www.encodeproject.org/files/ENCFF817PEL/@@download/ENCFF817PEL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF430EBI bigWig signal p-value ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC 203546329 ENCODE Processing Pipeline ed0d804aefd36ae35b8bc6e8ed5e515f https://www.encodeproject.org/files/ENCFF430EBI/@@download/ENCFF430EBI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF864LRN bed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF942MHC, ENCFF998UML 4576056 ENCODE Processing Pipeline 2035902143fb8db20ca86f2ec65afd8c https://www.encodeproject.org/files/ENCFF864LRN/@@download/ENCFF864LRN.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF875SHZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF590QKD 12693267 ENCODE Processing Pipeline 5889c65736ea64bd24d7bd3b9e326c11 https://www.encodeproject.org/files/ENCFF875SHZ/@@download/ENCFF875SHZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF936ZRG bigBed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF198QXS 13007279 ENCODE Processing Pipeline 95ec4eecb98af8142a6d195aa96dcbba https://www.encodeproject.org/files/ENCFF936ZRG/@@download/ENCFF936ZRG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF198QXS bed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC, ENCFF998UML 5899795 ENCODE Processing Pipeline 9d66f8ccc00e997846ee6627dd9eaf9b https://www.encodeproject.org/files/ENCFF198QXS/@@download/ENCFF198QXS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF887TLF bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF903KGH 734326 ENCODE Processing Pipeline 151d0901ca2049f55097087a38d2f27f https://www.encodeproject.org/files/ENCFF887TLF/@@download/ENCFF887TLF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF333YCZ bigWig fold change over control ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC, ENCFF998UML 350193027 ENCODE Processing Pipeline dd22e441edefcafce8b1676c5f20732b https://www.encodeproject.org/files/ENCFF333YCZ/@@download/ENCFF333YCZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF590QKD bed narrowPeak peaks and background as input for IDR ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF748PAR, ENCFF942MHC 5118569 ENCODE Processing Pipeline 09f828630608ccd3bbdb7972bd04f485 https://www.encodeproject.org/files/ENCFF590QKD/@@download/ENCFF590QKD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF903KGH bed narrowPeak optimal idr thresholded peaks ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF198QXS, ENCFF547MET, ENCFF590QKD, ENCFF864LRN 348196 ENCODE Processing Pipeline 510c7f5bf5355ad4ed5e7dda3cca35b5 https://www.encodeproject.org/files/ENCFF903KGH/@@download/ENCFF903KGH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF001IIG bigBed narrowPeak peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVM 353496 Barbara Wold, Caltech 1c62b3e6142e3e6de3eb079c1a8f40b1 https://www.encodeproject.org/files/ENCFF001IIG/@@download/ENCFF001IIG.bigBed mm9 released control low read depth insufficient read depth, insufficient read length ENCFF001IIH fastq reads ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 495853863 Barbara Wold, Caltech 50141b166155402169a7730a09fa2c56 https://www.encodeproject.org/files/ENCFF001IIH/@@download/ENCFF001IIH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released control low read depth insufficient read depth, insufficient read length ENCFF001III fastq reads ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 490321587 Barbara Wold, Caltech 29f88c2bcc6f9d3e92acc8281ce80c11 https://www.encodeproject.org/files/ENCFF001III/@@download/ENCFF001III.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released control low read depth insufficient read depth, insufficient read length ENCFF001IIJ bigWig signal ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIK 91487060 Barbara Wold, Caltech 6c70b21415a36ee2d5beab5a469e8fb9 https://www.encodeproject.org/files/ENCFF001IIJ/@@download/ENCFF001IIJ.bigWig mm9 released control low read depth insufficient read depth, insufficient read length ENCFF001IIK bam alignments ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIH, ENCFF001III 1060797117 Barbara Wold, Caltech d12d8e0f23ad6ead47d991a9be5e657b https://www.encodeproject.org/files/ENCFF001IIK/@@download/ENCFF001IIK.bam mm9 released control low read depth insufficient read depth, insufficient read length ENCFF001XVM bed narrowPeak peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIK 166494 Barbara Wold, Caltech bd514a1bdc0e656a4cf5728be848520f https://www.encodeproject.org/files/ENCFF001XVM/@@download/ENCFF001XVM.bed.gz mm9 released control low read depth insufficient read depth, insufficient read length ENCFF302FXR bam alignments ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IIH, ENCFF001III, ENCFF018NEO 440111743 ENCODE Processing Pipeline 7c09d69a9b16b08023d9dbaeb56dead6 https://www.encodeproject.org/files/ENCFF302FXR/@@download/ENCFF302FXR.bam mm10 released control low read depth insufficient read depth, insufficient read length ENCFF236MHA bam unfiltered alignments ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IIH, ENCFF001III, ENCFF018NEO 1116965724 ENCODE Processing Pipeline f5e89b98ed8beea5cdf15266121c8e6b https://www.encodeproject.org/files/ENCFF236MHA/@@download/ENCFF236MHA.bam mm10 released control low read depth insufficient read depth, insufficient read length ENCFF461PDW bigWig signal p-value ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF302FXR 276687513 ENCODE Processing Pipeline 3fc45e88709282dcead03bdfe2b54ce6 https://www.encodeproject.org/files/ENCFF461PDW/@@download/ENCFF461PDW.bigWig mm10 released control low read depth insufficient read depth, insufficient read length ENCFF565MVR bigWig fold change over control ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF302FXR 201036801 ENCODE Processing Pipeline bd2e52a679a5718a299218d22af90676 https://www.encodeproject.org/files/ENCFF565MVR/@@download/ENCFF565MVR.bigWig mm10 released control low read depth insufficient read depth, insufficient read length ENCFF786ZJY bigBed narrowPeak peaks and background as input for IDR ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF142QDG 8351928 ENCODE Processing Pipeline ee0d179f4f56d1e26086d527501127ca https://www.encodeproject.org/files/ENCFF786ZJY/@@download/ENCFF786ZJY.bigBed mm10 released control low read depth insufficient read depth, insufficient read length ENCFF142QDG bed narrowPeak peaks and background as input for IDR ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF302FXR 3445941 ENCODE Processing Pipeline 51f89ac10300e2e2d4cb42f8f5493d13 https://www.encodeproject.org/files/ENCFF142QDG/@@download/ENCFF142QDG.bed.gz mm10 released control low read depth insufficient read depth, insufficient read length ENCFF933CLI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF142QDG, ENCFF547MET 121031 ENCODE Processing Pipeline bef47708278d501d18c651f8ae5c186f https://www.encodeproject.org/files/ENCFF933CLI/@@download/ENCFF933CLI.bed.gz mm10 released control low read depth insufficient read depth, insufficient read length ENCFF174CKJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF933CLI 245052 ENCODE Processing Pipeline a4fca433d4611c518f9f0b222c085db2 https://www.encodeproject.org/files/ENCFF174CKJ/@@download/ENCFF174CKJ.bigBed mm10 released control low read depth insufficient read depth, insufficient read length ENCFF001IIC bigBed narrowPeak peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVL 487522 Barbara Wold, Caltech af2f17fff8fb45ac994fe84a14ea314a https://www.encodeproject.org/files/ENCFF001IIC/@@download/ENCFF001IIC.bigBed mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IID bigWig signal ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIE 72745329 Barbara Wold, Caltech 8c31ed7c7a5f60b386eb4ded655a9fd4 https://www.encodeproject.org/files/ENCFF001IID/@@download/ENCFF001IID.bigWig mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IIE bam alignments ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIU 1212558869 Barbara Wold, Caltech cf719a6dc330c5655f9eecc7ef260749 https://www.encodeproject.org/files/ENCFF001IIE/@@download/ENCFF001IIE.bam mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IIU fastq reads ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1318756530 Barbara Wold, Caltech 422fc27b552dd0be9a5620ff4fd5833b https://www.encodeproject.org/files/ENCFF001IIU/@@download/ENCFF001IIU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XVL bed narrowPeak peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIE 266529 Barbara Wold, Caltech 431148af96b303b46b78cd361de2a4b3 https://www.encodeproject.org/files/ENCFF001XVL/@@download/ENCFF001XVL.bed.gz mm9 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF975EAF bam unfiltered alignments ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIU, ENCFF018NEO 1260041385 ENCODE Processing Pipeline 9e245a6430d72b17c73ac34d60320725 https://www.encodeproject.org/files/ENCFF975EAF/@@download/ENCFF975EAF.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF727WYC bam alignments ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIU, ENCFF018NEO 418562487 ENCODE Processing Pipeline 8291bdc2cbcc597d4d289760b8b1f990 https://www.encodeproject.org/files/ENCFF727WYC/@@download/ENCFF727WYC.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF603MIB bed narrowPeak peaks and background as input for IDR ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF727WYC, ENCFF993HAY 3600667 ENCODE Processing Pipeline 10d0aeac5f20ee7d87b9f9703e04b63d https://www.encodeproject.org/files/ENCFF603MIB/@@download/ENCFF603MIB.bed.gz mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF086CZH bigBed narrowPeak peaks and background as input for IDR ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF603MIB 8750640 ENCODE Processing Pipeline 87c60063598b1bbc9e91657772aaa129 https://www.encodeproject.org/files/ENCFF086CZH/@@download/ENCFF086CZH.bigBed mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF587YHK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF603MIB 168924 ENCODE Processing Pipeline 94f82035c1fd33dc729ec6f386a4686c https://www.encodeproject.org/files/ENCFF587YHK/@@download/ENCFF587YHK.bed.gz mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF415GDF bigWig signal p-value ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF727WYC, ENCFF993HAY 236190654 ENCODE Processing Pipeline c2a797e1aeb1d996c5ef5bd532fa632a https://www.encodeproject.org/files/ENCFF415GDF/@@download/ENCFF415GDF.bigWig mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF247PFV bigWig fold change over control ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF727WYC, ENCFF993HAY 135711235 ENCODE Processing Pipeline 18d8320b3cf6c8822227e8a2fefbbe40 https://www.encodeproject.org/files/ENCFF247PFV/@@download/ENCFF247PFV.bigWig mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF410TBI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF587YHK 301387 ENCODE Processing Pipeline 5d5cdd215d0eae0f9fc8268827ea2741 https://www.encodeproject.org/files/ENCFF410TBI/@@download/ENCFF410TBI.bigBed mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001IIO bam alignments ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IIY 1345892990 Barbara Wold, Caltech ea1475e136c675a8201b0547d8280da7 https://www.encodeproject.org/files/ENCFF001IIO/@@download/ENCFF001IIO.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IIP bigBed narrowPeak peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVO 250295 Barbara Wold, Caltech a524efb9456bd86ad4d93e55254a5bd1 https://www.encodeproject.org/files/ENCFF001IIP/@@download/ENCFF001IIP.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IIQ bigWig signal ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIO 117514738 Barbara Wold, Caltech 6ceb1d58affb3e512a655ccc577add4e https://www.encodeproject.org/files/ENCFF001IIQ/@@download/ENCFF001IIQ.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IIY fastq reads ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 50 single-ended 1339549842 Barbara Wold, Caltech 681efd1b1d4497a0a69aaf84925de5fb https://www.encodeproject.org/files/ENCFF001IIY/@@download/ENCFF001IIY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IFD/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001XVO bed narrowPeak peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIO 143366 Barbara Wold, Caltech 7d086c774026f87e0a28495368753b37 https://www.encodeproject.org/files/ENCFF001XVO/@@download/ENCFF001XVO.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF543SHJ bam alignments ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIY, ENCFF018NEO 841845838 ENCODE Processing Pipeline 6c5b1ed70b61dc20541c2f0d340e22fd https://www.encodeproject.org/files/ENCFF543SHJ/@@download/ENCFF543SHJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF769RRI bam unfiltered alignments ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIY, ENCFF018NEO 1418998439 ENCODE Processing Pipeline 7a188084f468f5367598a8f6b97df2f1 https://www.encodeproject.org/files/ENCFF769RRI/@@download/ENCFF769RRI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF528CMM bigWig signal p-value ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF543SHJ, ENCFF875IDP 250275211 ENCODE Processing Pipeline f4be799b1131a6fa0696eadb0ccc8ad1 https://www.encodeproject.org/files/ENCFF528CMM/@@download/ENCFF528CMM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF602DCT bigWig fold change over control ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF543SHJ, ENCFF875IDP 239069078 ENCODE Processing Pipeline 113d0434c7bce254b6863796c66ea6ae https://www.encodeproject.org/files/ENCFF602DCT/@@download/ENCFF602DCT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF345HJJ bed narrowPeak peaks and background as input for IDR ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF543SHJ, ENCFF875IDP 4037611 ENCODE Processing Pipeline bf5805aff96a48e4e6dd5bab94ff2ed1 https://www.encodeproject.org/files/ENCFF345HJJ/@@download/ENCFF345HJJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF524EYE bigBed narrowPeak peaks and background as input for IDR ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF345HJJ 10031807 ENCODE Processing Pipeline 3830f5d087d8b540ea6e187316fe7f1c https://www.encodeproject.org/files/ENCFF524EYE/@@download/ENCFF524EYE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF338PWF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF997JWU 510179 ENCODE Processing Pipeline adc074144e5e6c6be8eac1a293e5d4b7 https://www.encodeproject.org/files/ENCFF338PWF/@@download/ENCFF338PWF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF997JWU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF345HJJ, ENCFF547MET 245433 ENCODE Processing Pipeline abed0f38952275df9994667d174de359 https://www.encodeproject.org/files/ENCFF997JWU/@@download/ENCFF997JWU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001IHA bigBed narrowPeak peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVG 552358 Barbara Wold, Caltech d1c7b7a1d719f5a2dc815dd69488a0d7 https://www.encodeproject.org/files/ENCFF001IHA/@@download/ENCFF001IHA.bigBed mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001IHC fastq reads ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 307444369 Barbara Wold, Caltech d36a07f7c1c0cc506619be1f8c8ef3c7 https://www.encodeproject.org/files/ENCFF001IHC/@@download/ENCFF001IHC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHD fastq reads ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 643114405 Barbara Wold, Caltech fcf02ecf04a183a5acbc646c9fc9deab https://www.encodeproject.org/files/ENCFF001IHD/@@download/ENCFF001IHD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHE fastq reads ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 623905069 Barbara Wold, Caltech 23073811836324ee3abed2b8bf1aaad4 https://www.encodeproject.org/files/ENCFF001IHE/@@download/ENCFF001IHE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHF bigWig signal ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHG 133179903 Barbara Wold, Caltech 1c722c609b578f615bf1ded35f64d5f8 https://www.encodeproject.org/files/ENCFF001IHF/@@download/ENCFF001IHF.bigWig mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001IHG bam alignments ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHC, ENCFF001IHD, ENCFF001IHE 1673154508 Barbara Wold, Caltech a854f6452270167d958fad360e3c5718 https://www.encodeproject.org/files/ENCFF001IHG/@@download/ENCFF001IHG.bam mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001XVG bed narrowPeak peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IHG 330689 Barbara Wold, Caltech af0eaeb06f835b1798468f173f62e31f https://www.encodeproject.org/files/ENCFF001XVG/@@download/ENCFF001XVG.bed.gz mm9 released low read depth insufficient read length, control insufficient read depth ENCFF831FSR bam unfiltered alignments ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHC, ENCFF001IHD, ENCFF001IHE, ENCFF018NEO 1748695314 ENCODE Processing Pipeline 8260d93a2bebe95d3d7415766556c100 https://www.encodeproject.org/files/ENCFF831FSR/@@download/ENCFF831FSR.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF204AZL bam alignments ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHC, ENCFF001IHD, ENCFF001IHE, ENCFF018NEO 658741352 ENCODE Processing Pipeline 8f84f747b974676c4a23d4d482607fc0 https://www.encodeproject.org/files/ENCFF204AZL/@@download/ENCFF204AZL.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF301PHS bigWig signal p-value ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF204AZL 196623050 ENCODE Processing Pipeline 3c892b2bb974b677847d751eab0626a5 https://www.encodeproject.org/files/ENCFF301PHS/@@download/ENCFF301PHS.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF539PGU bigWig fold change over control ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF204AZL 220263267 ENCODE Processing Pipeline 5f5d54326a714e2a6705aa9a0fae3a78 https://www.encodeproject.org/files/ENCFF539PGU/@@download/ENCFF539PGU.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF329WSM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF534YYK 832466 ENCODE Processing Pipeline 12a6d2f47adf271e2d029e65baa517f7 https://www.encodeproject.org/files/ENCFF329WSM/@@download/ENCFF329WSM.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF657WKI bigBed narrowPeak peaks and background as input for IDR ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF619BMR 10267881 ENCODE Processing Pipeline a833b8aa758adecc1abc21898fbe1837 https://www.encodeproject.org/files/ENCFF657WKI/@@download/ENCFF657WKI.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF619BMR bed narrowPeak peaks and background as input for IDR ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF204AZL 4440951 ENCODE Processing Pipeline 7b7bfc599d72ada5e79410a090cd379b https://www.encodeproject.org/files/ENCFF619BMR/@@download/ENCFF619BMR.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF534YYK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF619BMR 492067 ENCODE Processing Pipeline 767fc0c9145052bd169fa38ea2fd273c https://www.encodeproject.org/files/ENCFF534YYK/@@download/ENCFF534YYK.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF965ADO fastq reads ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2741131347 Bing Ren, UCSD dc9a4ae6087051f7bc82725ba52318ab SRA:SRR4235654 https://www.encodeproject.org/files/ENCFF965ADO/@@download/ENCFF965ADO.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released mild to moderate bottlenecking, moderate library complexity ENCFF394QOQ fastq reads ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2449728383 Bing Ren, UCSD 27373134d887f2699b6d8ac47ae690b3 SRA:SRR4235655 https://www.encodeproject.org/files/ENCFF394QOQ/@@download/ENCFF394QOQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released mild to moderate bottlenecking, moderate library complexity ENCFF721IGU bam unfiltered alignments ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF965ADO 3570958274 ENCODE Processing Pipeline 749a36141b65eadb6ebc957d0a75cfe9 https://www.encodeproject.org/files/ENCFF721IGU/@@download/ENCFF721IGU.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF253JRQ bam unfiltered alignments ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF394QOQ 3234080242 ENCODE Processing Pipeline c0efe0da510d0d07bd7ff26a097ea138 https://www.encodeproject.org/files/ENCFF253JRQ/@@download/ENCFF253JRQ.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF543QFQ bam alignments ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF965ADO 1644612668 ENCODE Processing Pipeline a521afafda394bbc9bc142db41d4d84c https://www.encodeproject.org/files/ENCFF543QFQ/@@download/ENCFF543QFQ.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF596FFU bam alignments ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF394QOQ 1593340072 ENCODE Processing Pipeline f60333b1c67fc88524d99fe859e58937 https://www.encodeproject.org/files/ENCFF596FFU/@@download/ENCFF596FFU.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF819RZO bed narrowPeak peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF596FFU, ENCFF887RXR 831932 ENCODE Processing Pipeline 94ee1b11e5a354a668a05b1dbb5c532b https://www.encodeproject.org/files/ENCFF819RZO/@@download/ENCFF819RZO.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF288VDB bigBed narrowPeak peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF493HEJ 1619988 ENCODE Processing Pipeline 21ae8127b964cfc1ace410d8087bd240 https://www.encodeproject.org/files/ENCFF288VDB/@@download/ENCFF288VDB.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF179ZQB bed narrowPeak peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF543QFQ, ENCFF596FFU, ENCFF887RXR 1116048 ENCODE Processing Pipeline 092088a3ea7417b8f4adf4720b3f37c2 https://www.encodeproject.org/files/ENCFF179ZQB/@@download/ENCFF179ZQB.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF840TKH bigBed narrowPeak peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF819RZO 1535550 ENCODE Processing Pipeline bcbb7e8436659ae21d2ae675a7292144 https://www.encodeproject.org/files/ENCFF840TKH/@@download/ENCFF840TKH.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF493HEJ bed narrowPeak peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF543QFQ 695589 ENCODE Processing Pipeline b9e71acbfc88d8ca0c0350f25869369c https://www.encodeproject.org/files/ENCFF493HEJ/@@download/ENCFF493HEJ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF876FVW bigBed narrowPeak peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF179ZQB 2387985 ENCODE Processing Pipeline 03cee94db446ebd3756cf972baf57719 https://www.encodeproject.org/files/ENCFF876FVW/@@download/ENCFF876FVW.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF641FBI bigWig signal p-value ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF543QFQ 798591164 ENCODE Processing Pipeline 46f31a8fa51d573675560c0d249eb149 https://www.encodeproject.org/files/ENCFF641FBI/@@download/ENCFF641FBI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF161PIN bigWig signal p-value ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF596FFU, ENCFF887RXR 712211602 ENCODE Processing Pipeline 2a845d59152ec896e529a72296eeb72c https://www.encodeproject.org/files/ENCFF161PIN/@@download/ENCFF161PIN.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF874WHJ bigWig signal p-value ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF543QFQ, ENCFF596FFU, ENCFF887RXR 1443438285 ENCODE Processing Pipeline 5317e751457056df184fbc12d46bf2f9 https://www.encodeproject.org/files/ENCFF874WHJ/@@download/ENCFF874WHJ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF202HEF bigWig fold change over control ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF543QFQ 807541877 ENCODE Processing Pipeline ccf9321cd19caff142d148fa439fcfe5 https://www.encodeproject.org/files/ENCFF202HEF/@@download/ENCFF202HEF.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF123UDV bigWig fold change over control ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF596FFU, ENCFF887RXR 714759587 ENCODE Processing Pipeline 72ee3a0019648ea252ef54a21ae5523e https://www.encodeproject.org/files/ENCFF123UDV/@@download/ENCFF123UDV.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF605XQS bigBed narrowPeak replicated peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF749BXF 738215 ENCODE Processing Pipeline a7c902841c19adff34bb7b652131035f https://www.encodeproject.org/files/ENCFF605XQS/@@download/ENCFF605XQS.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF172OCI bigWig fold change over control ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF543QFQ, ENCFF596FFU, ENCFF887RXR 1439518214 ENCODE Processing Pipeline ac9d80bc4ac3d084f394cf5b1ce95d1b https://www.encodeproject.org/files/ENCFF172OCI/@@download/ENCFF172OCI.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF749BXF bed narrowPeak replicated peaks ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF179ZQB, ENCFF493HEJ, ENCFF819RZO 329863 ENCODE Processing Pipeline 141ca5a6c768b32c7a8040c66e53e239 https://www.encodeproject.org/files/ENCFF749BXF/@@download/ENCFF749BXF.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF302BNP fastq reads ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 1 50 single-ended 2445657289 Bing Ren, UCSD 9be3ad083a728030ebc49aa7d52c8bb9 SRA:SRR5833136 https://www.encodeproject.org/files/ENCFF302BNP/@@download/ENCFF302BNP.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released mild to moderate bottlenecking ENCFF728NKV fastq reads ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 1 50 single-ended 2324286497 Bing Ren, UCSD ef899a22a938a7852b4e551359a13e33 SRA:SRR5833135 https://www.encodeproject.org/files/ENCFF728NKV/@@download/ENCFF728NKV.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released mild to moderate bottlenecking ENCFF362TTY bam unfiltered alignments ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF018NEO, ENCFF302BNP 3250894659 ENCODE Processing Pipeline 2edb0b71dbb151aa3fac36b2d8efaa65 https://www.encodeproject.org/files/ENCFF362TTY/@@download/ENCFF362TTY.bam mm10 released mild to moderate bottlenecking ENCFF733FJN bam unfiltered alignments ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF018NEO, ENCFF728NKV 3103396991 ENCODE Processing Pipeline 50f92060895691905960fe8c9e614df7 https://www.encodeproject.org/files/ENCFF733FJN/@@download/ENCFF733FJN.bam mm10 released mild to moderate bottlenecking ENCFF284ATY bam alignments ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF018NEO, ENCFF728NKV 1585068327 ENCODE Processing Pipeline ca7228735fcda4bb6bbc7fe1565cb575 https://www.encodeproject.org/files/ENCFF284ATY/@@download/ENCFF284ATY.bam mm10 released mild to moderate bottlenecking ENCFF213UUJ bam alignments ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF018NEO, ENCFF302BNP 1780749500 ENCODE Processing Pipeline ca568459a320474608dbd65013f31ee8 https://www.encodeproject.org/files/ENCFF213UUJ/@@download/ENCFF213UUJ.bam mm10 released mild to moderate bottlenecking ENCFF001IEG fastq reads ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 229882249 Barbara Wold, Caltech 2cb320b206f655ac1792968c577d6d66 https://www.encodeproject.org/files/ENCFF001IEG/@@download/ENCFF001IEG.fastq.gz Illumina Genome Analyzer II released insufficient read depth, insufficient read length ENCFF001IEJ bigWig signal ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 ENCFF001IEK 88609706 Barbara Wold, Caltech a6cc5ca42bb44a3866a43f438627720a https://www.encodeproject.org/files/ENCFF001IEJ/@@download/ENCFF001IEJ.bigWig mm9 released insufficient read depth, insufficient read length ENCFF001IEK bam alignments ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 ENCFF001IEG, ENCFF001IEH, ENCFF001IEI 826140999 Barbara Wold, Caltech 04990780cdc7fe738dd5c548382d908d https://www.encodeproject.org/files/ENCFF001IEK/@@download/ENCFF001IEK.bam mm9 released insufficient read depth, insufficient read length ENCFF001IEH fastq reads ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 256882163 Barbara Wold, Caltech c5b99e9b4c88f9e6281d769029e14ee2 https://www.encodeproject.org/files/ENCFF001IEH/@@download/ENCFF001IEH.fastq.gz Illumina Genome Analyzer II released insufficient read depth, insufficient read length ENCFF001IEI fastq reads ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 1 32 single-ended 240351038 Barbara Wold, Caltech a6cdbf5d2fdf1ae53c0df9cfa61434fe https://www.encodeproject.org/files/ENCFF001IEI/@@download/ENCFF001IEI.fastq.gz Illumina Genome Analyzer II released insufficient read depth, insufficient read length ENCFF823CBA bam unfiltered alignments ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 ENCFF001IEG, ENCFF001IEH, ENCFF001IEI, ENCFF806TVZ 890359190 ENCODE Processing Pipeline fc26bfeff3dbc7c741e083268a474c5d https://www.encodeproject.org/files/ENCFF823CBA/@@download/ENCFF823CBA.bam mm10-minimal archived insufficient read depth, insufficient read length ENCFF319ZGT bam alignments ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 32 ENCFF001IEG, ENCFF001IEH, ENCFF001IEI, ENCFF018NEO 433472947 ENCODE Processing Pipeline f02f85c71134bc2f4df56037aace7f08 https://www.encodeproject.org/files/ENCFF319ZGT/@@download/ENCFF319ZGT.bam mm10 released insufficient read depth, insufficient read length ENCFF323CXM bam unfiltered alignments ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 32 ENCFF001IEG, ENCFF001IEH, ENCFF001IEI, ENCFF018NEO 890969377 ENCODE Processing Pipeline 782fc9bc419cfd307a40c471727742d2 https://www.encodeproject.org/files/ENCFF323CXM/@@download/ENCFF323CXM.bam mm10 released insufficient read depth, insufficient read length ENCFF002AGY fastq reads ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 944919933 Bing Ren, UCSD f91187ffafa6b9049cfb885157188061 SRA:SRR3652423 https://www.encodeproject.org/files/ENCFF002AGY/@@download/ENCFF002AGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQY/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AHF fastq reads ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1151286135 Bing Ren, UCSD 25d81a35e1e681ea3111120f69f1de8c SRA:SRR3652425 https://www.encodeproject.org/files/ENCFF002AHF/@@download/ENCFF002AHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARA/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF570SXA bam alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHF, ENCFF806TVZ 900320441 ENCODE Processing Pipeline c6d4cd58ec54314527cdc20a494e1d30 https://www.encodeproject.org/files/ENCFF570SXA/@@download/ENCFF570SXA.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF006CCL fastq reads ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 570317043 Bing Ren, UCSD b453b85aab7dc7f6b9431dcfd4399401 SRA:SRR3652424 https://www.encodeproject.org/files/ENCFF006CCL/@@download/ENCFF006CCL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQY/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF044JXD bam alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGY, ENCFF006CCL, ENCFF806TVZ 1295334998 ENCODE Processing Pipeline af5fb57e5ca8be53f148ba83705510d5 https://www.encodeproject.org/files/ENCFF044JXD/@@download/ENCFF044JXD.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF836CBC bed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF044JXD, ENCFF175WRM, ENCFF184XIW, ENCFF570SXA 594927 ENCODE Processing Pipeline 9f019f7e765d9cdf8ce5018664802414 https://www.encodeproject.org/files/ENCFF836CBC/@@download/ENCFF836CBC.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF749VQR bigBed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF836CBC 1357683 ENCODE Processing Pipeline d0813d0ea6e54b302c87a8df9ef66ac3 https://www.encodeproject.org/files/ENCFF749VQR/@@download/ENCFF749VQR.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF916WCE bed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF044JXD, ENCFF175WRM, ENCFF184XIW 717719 ENCODE Processing Pipeline 9f7c7fe0c19f28a3ccb00ab582eb5258 https://www.encodeproject.org/files/ENCFF916WCE/@@download/ENCFF916WCE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF239VMV bed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF570SXA 632606 ENCODE Processing Pipeline bd88aedab5f747350c19caf17a4fac8c https://www.encodeproject.org/files/ENCFF239VMV/@@download/ENCFF239VMV.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF890MIQ bigBed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF916WCE 1739248 ENCODE Processing Pipeline 2f527172bcb973c144c9ec33291f2487 https://www.encodeproject.org/files/ENCFF890MIQ/@@download/ENCFF890MIQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF356AJQ bigBed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF239VMV 1569147 ENCODE Processing Pipeline fa765ff42ef60daa8469240543a86b0c https://www.encodeproject.org/files/ENCFF356AJQ/@@download/ENCFF356AJQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF946ENL bigWig signal p-value ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF044JXD, ENCFF175WRM, ENCFF184XIW 602285597 ENCODE Processing Pipeline 9bf78e28fd0f57c712247311997db5f5 https://www.encodeproject.org/files/ENCFF946ENL/@@download/ENCFF946ENL.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF471QYE bigWig signal p-value ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF570SXA 475655217 ENCODE Processing Pipeline f98994f401769a7ce07d02330351c608 https://www.encodeproject.org/files/ENCFF471QYE/@@download/ENCFF471QYE.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF940UMF bigWig signal p-value ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF044JXD, ENCFF175WRM, ENCFF184XIW, ENCFF570SXA 606501312 ENCODE Processing Pipeline bd4bccc78385b2f9392d8005c4fcfce8 https://www.encodeproject.org/files/ENCFF940UMF/@@download/ENCFF940UMF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF350VBG bigWig fold change over control ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF044JXD, ENCFF175WRM, ENCFF184XIW, ENCFF570SXA 874163961 ENCODE Processing Pipeline 8b754c53d5f05be3c4d652ebff23dd7f https://www.encodeproject.org/files/ENCFF350VBG/@@download/ENCFF350VBG.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF058JZH bigWig fold change over control ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF044JXD, ENCFF175WRM, ENCFF184XIW 648171558 ENCODE Processing Pipeline cc0ce049b9297e8856d8bd0abf3f79f2 https://www.encodeproject.org/files/ENCFF058JZH/@@download/ENCFF058JZH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF215AWB bed narrowPeak replicated peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF239VMV, ENCFF836CBC, ENCFF916WCE 250553 ENCODE Processing Pipeline 299c2015d73f8c69511dcf3efcb7c15a https://www.encodeproject.org/files/ENCFF215AWB/@@download/ENCFF215AWB.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF507NFB bigBed narrowPeak replicated peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF215AWB 678207 ENCODE Processing Pipeline a3a326c3809132683121d66f5f0bc6ac https://www.encodeproject.org/files/ENCFF507NFB/@@download/ENCFF507NFB.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF968LFK bigWig fold change over control ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF570SXA 540342091 ENCODE Processing Pipeline 2b7dbbe3a9a08acda6b702933b25dc16 https://www.encodeproject.org/files/ENCFF968LFK/@@download/ENCFF968LFK.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF040WWP bam unfiltered alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGY, ENCFF006CCL, ENCFF018NEO 1639372312 ENCODE Processing Pipeline efdd9f88b20b45dc40599ccb319152d7 https://www.encodeproject.org/files/ENCFF040WWP/@@download/ENCFF040WWP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF953HZV bam unfiltered alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHF, ENCFF018NEO 1277288723 ENCODE Processing Pipeline d3dfb2687092e383b549ae74e51ca7c1 https://www.encodeproject.org/files/ENCFF953HZV/@@download/ENCFF953HZV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF598SHY bam alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHF, ENCFF018NEO 900088296 ENCODE Processing Pipeline bb15cbcbf26a5723b4c57dc43213b0ba https://www.encodeproject.org/files/ENCFF598SHY/@@download/ENCFF598SHY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF837AZO bam alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGY, ENCFF006CCL, ENCFF018NEO 1146160915 ENCODE Processing Pipeline 769216ea7f5d272c6dc806068af4940f https://www.encodeproject.org/files/ENCFF837AZO/@@download/ENCFF837AZO.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF719NCN bed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF837AZO 634141 ENCODE Processing Pipeline 67e2f9b9c6705a15638f82891c9accf7 https://www.encodeproject.org/files/ENCFF719NCN/@@download/ENCFF719NCN.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF853KIV bed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF598SHY 426267 ENCODE Processing Pipeline f8ab3dbada184f8a28a34a817f503494 https://www.encodeproject.org/files/ENCFF853KIV/@@download/ENCFF853KIV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF656OCG bed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF598SHY, ENCFF837AZO 635417 ENCODE Processing Pipeline d9843817b89ce2c843f5e8900745703e https://www.encodeproject.org/files/ENCFF656OCG/@@download/ENCFF656OCG.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF830HJK bigBed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF719NCN 1550012 ENCODE Processing Pipeline f77dac55c9345603e5b884823dc10e38 https://www.encodeproject.org/files/ENCFF830HJK/@@download/ENCFF830HJK.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF587JGW bigBed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF853KIV 1058353 ENCODE Processing Pipeline 74f8544f4642fb02688f49a2f75477da https://www.encodeproject.org/files/ENCFF587JGW/@@download/ENCFF587JGW.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF562AEC bigBed narrowPeak peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF656OCG 1468689 ENCODE Processing Pipeline 7e1407360715be79cc36dd179496ae5e https://www.encodeproject.org/files/ENCFF562AEC/@@download/ENCFF562AEC.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF960AYT bigWig signal p-value ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF837AZO 540965877 ENCODE Processing Pipeline 3ecc3be700fe13412f5306d50f02d0c9 https://www.encodeproject.org/files/ENCFF960AYT/@@download/ENCFF960AYT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF076VDV bigWig signal p-value ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF598SHY 533501416 ENCODE Processing Pipeline cbb5583c672095dd64f736d8e5ba40ea https://www.encodeproject.org/files/ENCFF076VDV/@@download/ENCFF076VDV.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF339BGN bigWig signal p-value ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF598SHY, ENCFF837AZO 651459388 ENCODE Processing Pipeline 2b87e36e39d0edcd7f87ddd4fccacd6a https://www.encodeproject.org/files/ENCFF339BGN/@@download/ENCFF339BGN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF683JII bigWig fold change over control ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF837AZO 651965841 ENCODE Processing Pipeline 51f2e636a7d6922806cbced5922872eb https://www.encodeproject.org/files/ENCFF683JII/@@download/ENCFF683JII.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF188DIZ bigWig fold change over control ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF598SHY 538345353 ENCODE Processing Pipeline b3ab2c9cae74bffb505dd0c5138dd147 https://www.encodeproject.org/files/ENCFF188DIZ/@@download/ENCFF188DIZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF460ZYC bigWig fold change over control ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF598SHY, ENCFF837AZO 907414843 ENCODE Processing Pipeline 5db02fefa3ec927042dca181fe7e995d https://www.encodeproject.org/files/ENCFF460ZYC/@@download/ENCFF460ZYC.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF964GXC bigBed narrowPeak replicated peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF288HXC 603876 ENCODE Processing Pipeline 030e03674c040c829a07d02d5c75bea2 https://www.encodeproject.org/files/ENCFF964GXC/@@download/ENCFF964GXC.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF288HXC bed narrowPeak replicated peaks ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF656OCG, ENCFF719NCN, ENCFF853KIV 227038 ENCODE Processing Pipeline 5c1f60c2c28cfb69f32fc86c6503bfce https://www.encodeproject.org/files/ENCFF288HXC/@@download/ENCFF288HXC.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF079ZSP fastq reads ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1133998859 Bing Ren, UCSD dfc1b14278bdd65acc67fd1891d4cbae SRA:SRR3652175 https://www.encodeproject.org/files/ENCFF079ZSP/@@download/ENCFF079ZSP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF898OWK fastq reads ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 887388808 Bing Ren, UCSD eafe6bb65f1cccc889001a50c238eb45 SRA:SRR3652176 https://www.encodeproject.org/files/ENCFF898OWK/@@download/ENCFF898OWK.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF820CUO fastq reads ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 36 single-ended 1007036362 Bing Ren, UCSD 6a483a2a662ffdb38aa9ed3a2698509a SRA:SRR3652177 https://www.encodeproject.org/files/ENCFF820CUO/@@download/ENCFF820CUO.fastq.gz Illumina HiSeq 2500 /files/ENCFF249RWY/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF056AWO bam alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF079ZSP, ENCFF806TVZ 1056053933 ENCODE Processing Pipeline 534a02553476cc913e121c241b69f059 https://www.encodeproject.org/files/ENCFF056AWO/@@download/ENCFF056AWO.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF177EKG bam alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF806TVZ, ENCFF820CUO, ENCFF898OWK 1841834667 ENCODE Processing Pipeline 1fe19bb093403dfa4355041bac3bcfb9 https://www.encodeproject.org/files/ENCFF177EKG/@@download/ENCFF177EKG.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF046QEH bigBed narrowPeak replicated peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF699ZZL 1219007 ENCODE Processing Pipeline 284ec27acd3f31f7d5f3b318b8f6e8b7 https://www.encodeproject.org/files/ENCFF046QEH/@@download/ENCFF046QEH.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF683HDJ bed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF056AWO, ENCFF439PVF, ENCFF578PIN 931979 ENCODE Processing Pipeline d93d07ecf563b12a345bfe3e40c95231 https://www.encodeproject.org/files/ENCFF683HDJ/@@download/ENCFF683HDJ.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF910AKY bigBed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF683HDJ 2179198 ENCODE Processing Pipeline 62088d7c25b719a46786ccd865c77136 https://www.encodeproject.org/files/ENCFF910AKY/@@download/ENCFF910AKY.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF583FKR bigBed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF692WHP 1616860 ENCODE Processing Pipeline d795f0400d026d238893bb126b0c9482 https://www.encodeproject.org/files/ENCFF583FKR/@@download/ENCFF583FKR.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF219MBB bigBed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF701UKO 1377195 ENCODE Processing Pipeline 3cc71f9844c22e0b3d363075e9673251 https://www.encodeproject.org/files/ENCFF219MBB/@@download/ENCFF219MBB.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF692WHP bed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF177EKG, ENCFF439PVF, ENCFF578PIN 712285 ENCODE Processing Pipeline 16bc181d34c141e10d02c978f3bf5572 https://www.encodeproject.org/files/ENCFF692WHP/@@download/ENCFF692WHP.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF701UKO bed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF056AWO, ENCFF177EKG, ENCFF439PVF, ENCFF578PIN 626628 ENCODE Processing Pipeline dbbd04183326766201e4915139952058 https://www.encodeproject.org/files/ENCFF701UKO/@@download/ENCFF701UKO.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF147JEC bigWig signal p-value ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF177EKG, ENCFF439PVF, ENCFF578PIN 620948608 ENCODE Processing Pipeline da097ab877451a264bb707d57e86031f https://www.encodeproject.org/files/ENCFF147JEC/@@download/ENCFF147JEC.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF275CVX bigWig signal p-value ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF056AWO, ENCFF439PVF, ENCFF578PIN 450255220 ENCODE Processing Pipeline cf0df9665cf7aa6f0e6a756903f61d2c https://www.encodeproject.org/files/ENCFF275CVX/@@download/ENCFF275CVX.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF196CXK bigWig signal p-value ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF056AWO, ENCFF177EKG, ENCFF439PVF, ENCFF578PIN 608276259 ENCODE Processing Pipeline 60fa2b530d49eb3d4fa8f9eed8e904ce https://www.encodeproject.org/files/ENCFF196CXK/@@download/ENCFF196CXK.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF009MYG bigWig fold change over control ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF056AWO, ENCFF439PVF, ENCFF578PIN 476150693 ENCODE Processing Pipeline 46dc0fd7d93648fef3d92b382545a21b https://www.encodeproject.org/files/ENCFF009MYG/@@download/ENCFF009MYG.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF544KBC bigWig fold change over control ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF177EKG, ENCFF439PVF, ENCFF578PIN 703651571 ENCODE Processing Pipeline bd03fc22dec6b1e2ff0b62348786a28e https://www.encodeproject.org/files/ENCFF544KBC/@@download/ENCFF544KBC.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF405ZQL bigWig fold change over control ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF056AWO, ENCFF177EKG, ENCFF439PVF, ENCFF578PIN 947927900 ENCODE Processing Pipeline 78becae7943a98a38fccd9d0f78b0d09 https://www.encodeproject.org/files/ENCFF405ZQL/@@download/ENCFF405ZQL.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF699ZZL bed narrowPeak replicated peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF683HDJ, ENCFF692WHP, ENCFF701UKO 514945 ENCODE Processing Pipeline befd3987605c9f0c851d1a4e1a25ff50 https://www.encodeproject.org/files/ENCFF699ZZL/@@download/ENCFF699ZZL.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF006QZK bam unfiltered alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF079ZSP 1494846596 ENCODE Processing Pipeline 28b7e00ef389d6cd36fa76a739af8408 https://www.encodeproject.org/files/ENCFF006QZK/@@download/ENCFF006QZK.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF785LLE bam alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF079ZSP 1055841752 ENCODE Processing Pipeline 36e219b43f245553fd5866b8273900fc https://www.encodeproject.org/files/ENCFF785LLE/@@download/ENCFF785LLE.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF944SNB bam unfiltered alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF820CUO, ENCFF898OWK 2261278558 ENCODE Processing Pipeline 1cd12f0b88b60b77930181913e8be40e https://www.encodeproject.org/files/ENCFF944SNB/@@download/ENCFF944SNB.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF966EXV bam alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF820CUO, ENCFF898OWK 1617073845 ENCODE Processing Pipeline f13c2b6d986ccbdbad1ba70353b330ae https://www.encodeproject.org/files/ENCFF966EXV/@@download/ENCFF966EXV.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF476HWP bed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF966EXV 704423 ENCODE Processing Pipeline e04834ba248701a0ede1c3f288e0efba https://www.encodeproject.org/files/ENCFF476HWP/@@download/ENCFF476HWP.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF567CAG bigBed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF764FNY 1370494 ENCODE Processing Pipeline 96be0ce9387c00ba536d515ae496845e https://www.encodeproject.org/files/ENCFF567CAG/@@download/ENCFF567CAG.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF764FNY bed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF397HOQ, ENCFF749WCS, ENCFF785LLE, ENCFF966EXV 618518 ENCODE Processing Pipeline 652d74ea0057a8cce1466213be381da0 https://www.encodeproject.org/files/ENCFF764FNY/@@download/ENCFF764FNY.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF099GHF bigBed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF807VYX 2607021 ENCODE Processing Pipeline 984c7e3dffd8d644fa9462e98d310d89 https://www.encodeproject.org/files/ENCFF099GHF/@@download/ENCFF099GHF.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF989CQI bigWig signal p-value ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF749WCS, ENCFF785LLE 476180603 ENCODE Processing Pipeline 91f3f84f24c0499a820b9b3823524ee2 https://www.encodeproject.org/files/ENCFF989CQI/@@download/ENCFF989CQI.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF807VYX bed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF749WCS, ENCFF785LLE 1109123 ENCODE Processing Pipeline ec31f6b71a69b9033c029ac63e933d01 https://www.encodeproject.org/files/ENCFF807VYX/@@download/ENCFF807VYX.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF608QBP bigBed narrowPeak peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF476HWP 1606786 ENCODE Processing Pipeline a60881725228e486b0af937b5e2da468 https://www.encodeproject.org/files/ENCFF608QBP/@@download/ENCFF608QBP.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF417DWP bigWig signal p-value ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF966EXV 616174887 ENCODE Processing Pipeline 78750bea0b61461310010f3bf69f0745 https://www.encodeproject.org/files/ENCFF417DWP/@@download/ENCFF417DWP.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF673GAI bigWig signal p-value ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF397HOQ, ENCFF749WCS, ENCFF785LLE, ENCFF966EXV 605622960 ENCODE Processing Pipeline 79e715ea6dbc5a5ac258b7d44ccab485 https://www.encodeproject.org/files/ENCFF673GAI/@@download/ENCFF673GAI.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF414VMK bigWig fold change over control ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF749WCS, ENCFF785LLE 503368384 ENCODE Processing Pipeline a4fa45a3d30284e538401f7c2a16f34d https://www.encodeproject.org/files/ENCFF414VMK/@@download/ENCFF414VMK.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF033EHM bigWig fold change over control ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF966EXV 699286773 ENCODE Processing Pipeline c55093788e27291fa6814b75d6878775 https://www.encodeproject.org/files/ENCFF033EHM/@@download/ENCFF033EHM.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF025FNF bigWig fold change over control ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF397HOQ, ENCFF749WCS, ENCFF785LLE, ENCFF966EXV 944268425 ENCODE Processing Pipeline 2d9105415d9c98a5513e0676cb68ae18 https://www.encodeproject.org/files/ENCFF025FNF/@@download/ENCFF025FNF.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF887CCI bed narrowPeak replicated peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF476HWP, ENCFF764FNY, ENCFF807VYX 518991 ENCODE Processing Pipeline 726bab0b1ced38913c80d3c0ad7c4591 https://www.encodeproject.org/files/ENCFF887CCI/@@download/ENCFF887CCI.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF376ZXM bigBed narrowPeak replicated peaks ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF887CCI 1231675 ENCODE Processing Pipeline c03af04e60f019fcb3b695ab8724e150 https://www.encodeproject.org/files/ENCFF376ZXM/@@download/ENCFF376ZXM.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF226BJP fastq reads ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1617167115 Bing Ren, UCSD 72fa47dbf1168bcce0ebd4e2d033ffa5 SRA:SRR3651958 https://www.encodeproject.org/files/ENCFF226BJP/@@download/ENCFF226BJP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXR/ released low read length, control low read depth control insufficient read depth ENCFF743GSO fastq reads ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1829015321 Bing Ren, UCSD 8ff586d33c2fdb26f25ae130eeea5676 SRA:SRR3651959 https://www.encodeproject.org/files/ENCFF743GSO/@@download/ENCFF743GSO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXT/ released low read length, control low read depth control insufficient read depth ENCFF568MXC bam alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF743GSO, ENCFF806TVZ 1201924692 ENCODE Processing Pipeline 547f8121bb3671e209c71594efb402ce https://www.encodeproject.org/files/ENCFF568MXC/@@download/ENCFF568MXC.bam mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF413VCS bam alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF226BJP, ENCFF806TVZ 1010568966 ENCODE Processing Pipeline 4244e3d237772e05be84812093cd2395 https://www.encodeproject.org/files/ENCFF413VCS/@@download/ENCFF413VCS.bam mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF932JZQ bed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF461NAJ, ENCFF568MXC, ENCFF720BSQ 510332 ENCODE Processing Pipeline d707a1f6dcc95608677fdead8255c0ea https://www.encodeproject.org/files/ENCFF932JZQ/@@download/ENCFF932JZQ.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF617EJY bigBed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF932JZQ 1057380 ENCODE Processing Pipeline 4bf6a662d26e9bf9a7043b0bd6abb5c0 https://www.encodeproject.org/files/ENCFF617EJY/@@download/ENCFF617EJY.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF715STB bigWig signal p-value ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF413VCS, ENCFF461NAJ, ENCFF720BSQ 649883273 ENCODE Processing Pipeline 48af8d3cd49ad11920450391774a2922 https://www.encodeproject.org/files/ENCFF715STB/@@download/ENCFF715STB.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF157EJZ bed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF413VCS, ENCFF461NAJ, ENCFF568MXC, ENCFF720BSQ 419459 ENCODE Processing Pipeline 486b4dd236bbc6030bf810a7c8bcab3c https://www.encodeproject.org/files/ENCFF157EJZ/@@download/ENCFF157EJZ.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF704NIQ bigBed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF420ZAJ 897789 ENCODE Processing Pipeline 747a7af3a4a1dc3dab97f4c9a3f4aba9 https://www.encodeproject.org/files/ENCFF704NIQ/@@download/ENCFF704NIQ.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF366GGR bigBed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF157EJZ 1120328 ENCODE Processing Pipeline 9fc7fa362aab7850f8f31c0fe0cc5c2f https://www.encodeproject.org/files/ENCFF366GGR/@@download/ENCFF366GGR.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF420ZAJ bed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF413VCS, ENCFF461NAJ, ENCFF720BSQ 422569 ENCODE Processing Pipeline a17b1143f3272e62108d8502b5ba4140 https://www.encodeproject.org/files/ENCFF420ZAJ/@@download/ENCFF420ZAJ.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF182LUY bigWig signal p-value ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF413VCS, ENCFF461NAJ, ENCFF568MXC, ENCFF720BSQ 880357907 ENCODE Processing Pipeline a80437ba2ea2fee1530c2bc975a80eeb https://www.encodeproject.org/files/ENCFF182LUY/@@download/ENCFF182LUY.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF268FGE bigWig signal p-value ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF461NAJ, ENCFF568MXC, ENCFF720BSQ 716257202 ENCODE Processing Pipeline 5e6b2f400399979eec8ee1c8895cea7f https://www.encodeproject.org/files/ENCFF268FGE/@@download/ENCFF268FGE.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF482CCP bigWig fold change over control ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF413VCS, ENCFF461NAJ, ENCFF720BSQ 602005295 ENCODE Processing Pipeline 705ae66eb1be0a904bbcd7144f240c2d https://www.encodeproject.org/files/ENCFF482CCP/@@download/ENCFF482CCP.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF193URR bigWig fold change over control ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF461NAJ, ENCFF568MXC, ENCFF720BSQ 663506496 ENCODE Processing Pipeline 5c8ce1de8ad5681960b3d74b33c555bb https://www.encodeproject.org/files/ENCFF193URR/@@download/ENCFF193URR.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF500RAC bigWig fold change over control ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF413VCS, ENCFF461NAJ, ENCFF568MXC, ENCFF720BSQ 941344106 ENCODE Processing Pipeline 1934fed4f7990877151c01fd1190daf7 https://www.encodeproject.org/files/ENCFF500RAC/@@download/ENCFF500RAC.bigWig mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF733KQC bed narrowPeak replicated peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF157EJZ, ENCFF420ZAJ, ENCFF932JZQ 172993 ENCODE Processing Pipeline 000f17b74c47bfdb4d79abcd831724c8 https://www.encodeproject.org/files/ENCFF733KQC/@@download/ENCFF733KQC.bed.gz mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF050CJC bigBed narrowPeak replicated peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF733KQC 389368 ENCODE Processing Pipeline 0b2ad1951c4ef5f1a20b0ec66cd30d68 https://www.encodeproject.org/files/ENCFF050CJC/@@download/ENCFF050CJC.bigBed mm10-minimal archived low read length, control low read depth control insufficient read depth ENCFF068JAO bam unfiltered alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF226BJP 2075409384 ENCODE Processing Pipeline a3ec1927f3088ef8499e5ae4368992c5 https://www.encodeproject.org/files/ENCFF068JAO/@@download/ENCFF068JAO.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF050RXC bam unfiltered alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF743GSO 2350537624 ENCODE Processing Pipeline 9e1ea3b0dc5f7bd63bbffcd45d2841d3 https://www.encodeproject.org/files/ENCFF050RXC/@@download/ENCFF050RXC.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF499UBG bam alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF226BJP 1010005335 ENCODE Processing Pipeline 5cc62f2701ac6cc007e99f10267b8379 https://www.encodeproject.org/files/ENCFF499UBG/@@download/ENCFF499UBG.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF771ZYB bam alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF743GSO 1201337833 ENCODE Processing Pipeline 34201d8876777f758a27991bb2eb8316 https://www.encodeproject.org/files/ENCFF771ZYB/@@download/ENCFF771ZYB.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF305ONQ bed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF499UBG, ENCFF568KLX, ENCFF631VBQ, ENCFF771ZYB 493043 ENCODE Processing Pipeline 03a07c8a8e63d83301777cb9877c073d https://www.encodeproject.org/files/ENCFF305ONQ/@@download/ENCFF305ONQ.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF908WTN bigWig fold change over control ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF499UBG, ENCFF568KLX, ENCFF631VBQ 593793354 ENCODE Processing Pipeline 253382961d8054ad43f8835746fa7be5 https://www.encodeproject.org/files/ENCFF908WTN/@@download/ENCFF908WTN.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF094MJA bigWig fold change over control ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF631VBQ, ENCFF771ZYB 518361564 ENCODE Processing Pipeline 320c4c8ea81a457ab6eb16cb21e3fee4 https://www.encodeproject.org/files/ENCFF094MJA/@@download/ENCFF094MJA.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF326PAD bigBed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF509VUP 1224404 ENCODE Processing Pipeline b4ee36bf8bd8007c3b8870b34a5cece5 https://www.encodeproject.org/files/ENCFF326PAD/@@download/ENCFF326PAD.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF726UEP bigBed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF608UWL 355655 ENCODE Processing Pipeline 375833c06958d4cea276131fbebc102a https://www.encodeproject.org/files/ENCFF726UEP/@@download/ENCFF726UEP.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF869FUJ bigBed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF305ONQ 1269896 ENCODE Processing Pipeline 1d58245b43ee441d9b5938653fff3581 https://www.encodeproject.org/files/ENCFF869FUJ/@@download/ENCFF869FUJ.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF509VUP bed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF499UBG, ENCFF568KLX, ENCFF631VBQ 617556 ENCODE Processing Pipeline 7eb3d2078d671664416f4fc99b202cec https://www.encodeproject.org/files/ENCFF509VUP/@@download/ENCFF509VUP.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF045BCO bigWig signal p-value ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF499UBG, ENCFF568KLX, ENCFF631VBQ 522233077 ENCODE Processing Pipeline 06f40fa29512487a988c186a71428f71 https://www.encodeproject.org/files/ENCFF045BCO/@@download/ENCFF045BCO.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF978JLY bigWig signal p-value ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF631VBQ, ENCFF771ZYB 500651679 ENCODE Processing Pipeline 53a44a5d5b4b99045db7252d8f9b9d87 https://www.encodeproject.org/files/ENCFF978JLY/@@download/ENCFF978JLY.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF650XPW bed narrowPeak replicated peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF305ONQ, ENCFF509VUP, ENCFF608UWL 159840 ENCODE Processing Pipeline 0a0ad9a53e1ab01c1bfd4420d6b1502f https://www.encodeproject.org/files/ENCFF650XPW/@@download/ENCFF650XPW.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF608UWL bed narrowPeak peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF631VBQ, ENCFF771ZYB 172195 ENCODE Processing Pipeline a54d800f3e9706c7915ae8cfbd53bd57 https://www.encodeproject.org/files/ENCFF608UWL/@@download/ENCFF608UWL.bed.gz mm10 released low read length, control low read depth control insufficient read depth ENCFF768CWW bigWig signal p-value ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF499UBG, ENCFF568KLX, ENCFF631VBQ, ENCFF771ZYB 881298206 ENCODE Processing Pipeline 63c54f08e1b85a61b281f67f784bab18 https://www.encodeproject.org/files/ENCFF768CWW/@@download/ENCFF768CWW.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF195JYT bigBed narrowPeak replicated peaks ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF650XPW 365700 ENCODE Processing Pipeline 66e4bf0d69d7115c0b71b6a1e909015f https://www.encodeproject.org/files/ENCFF195JYT/@@download/ENCFF195JYT.bigBed mm10 released low read length, control low read depth control insufficient read depth ENCFF981JRQ bigWig fold change over control ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF499UBG, ENCFF568KLX, ENCFF631VBQ, ENCFF771ZYB 943149513 ENCODE Processing Pipeline ec6fce5f9fc678957bf3ba263203a06c https://www.encodeproject.org/files/ENCFF981JRQ/@@download/ENCFF981JRQ.bigWig mm10 released low read length, control low read depth control insufficient read depth ENCFF255APX fastq reads ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2420593527 Bing Ren, UCSD 6653f68baf2f85c0a52dabe4422b135d SRA:SRR3652257 https://www.encodeproject.org/files/ENCFF255APX/@@download/ENCFF255APX.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF927HRQ fastq reads ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1637841894 Bing Ren, UCSD d41024864b11458422bd3a33f3fa76ba SRA:SRR3652255 https://www.encodeproject.org/files/ENCFF927HRQ/@@download/ENCFF927HRQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF892ULL fastq reads ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1553737996 Bing Ren, UCSD 278dc6dafeaf7e13575c638cc2132af9 SRA:SRR3652258 https://www.encodeproject.org/files/ENCFF892ULL/@@download/ENCFF892ULL.fastq.gz Illumina HiSeq 2500 /files/ENCFF636CUM/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF373VWC fastq reads ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 248924573 Bing Ren, UCSD 42ac028801f8605e76afa3601a4a28e6 SRA:SRR3652259 https://www.encodeproject.org/files/ENCFF373VWC/@@download/ENCFF373VWC.fastq.gz Illumina HiSeq 2500 /files/ENCFF636CUM/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF835FWW fastq reads ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3295577960 Bing Ren, UCSD 474d79819c11f3643fb69642ed48befa SRA:SRR3652256 https://www.encodeproject.org/files/ENCFF835FWW/@@download/ENCFF835FWW.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF241ATQ bam alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF255APX, ENCFF373VWC, ENCFF806TVZ, ENCFF892ULL 2861322819 ENCODE Processing Pipeline 91cb557b3443e59100493ff8f2a3c117 https://www.encodeproject.org/files/ENCFF241ATQ/@@download/ENCFF241ATQ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF280GLL bam alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF806TVZ, ENCFF835FWW, ENCFF927HRQ 3105350232 ENCODE Processing Pipeline 8ff84d1236700b4f2158dc7a2b19e1c9 https://www.encodeproject.org/files/ENCFF280GLL/@@download/ENCFF280GLL.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF496JWD bigBed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF813PLR 5882910 ENCODE Processing Pipeline 25cdd45634a49344498e5b894ec6da84 https://www.encodeproject.org/files/ENCFF496JWD/@@download/ENCFF496JWD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF040PPF bed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF241ATQ, ENCFF881FJP 2437988 ENCODE Processing Pipeline 6406e18d845ead12cf164b46b8a33253 https://www.encodeproject.org/files/ENCFF040PPF/@@download/ENCFF040PPF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF725QUX bed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF241ATQ, ENCFF280GLL, ENCFF881FJP 2781931 ENCODE Processing Pipeline f85c0ba9c5c1f70dc4ce68fc88951803 https://www.encodeproject.org/files/ENCFF725QUX/@@download/ENCFF725QUX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF582RSC bigBed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF725QUX 6068006 ENCODE Processing Pipeline 42db0780312a4b417677908cfd62e853 https://www.encodeproject.org/files/ENCFF582RSC/@@download/ENCFF582RSC.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF813PLR bed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF280GLL, ENCFF881FJP 2613918 ENCODE Processing Pipeline e6c99b763e28c8c6cbeaea4793643c05 https://www.encodeproject.org/files/ENCFF813PLR/@@download/ENCFF813PLR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF313XOV bigBed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF040PPF 5407828 ENCODE Processing Pipeline 3f31f9ffb1241216a4c8a9209e598858 https://www.encodeproject.org/files/ENCFF313XOV/@@download/ENCFF313XOV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF796OTA bigWig signal p-value ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF280GLL, ENCFF881FJP 1221704661 ENCODE Processing Pipeline 77e9cc97340153455a16f28a49ea040b https://www.encodeproject.org/files/ENCFF796OTA/@@download/ENCFF796OTA.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF068RHL bigWig signal p-value ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF241ATQ, ENCFF881FJP 1078170069 ENCODE Processing Pipeline 87af3634ab14c8f0b790db88ce677f07 https://www.encodeproject.org/files/ENCFF068RHL/@@download/ENCFF068RHL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF352OOT bigWig signal p-value ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF241ATQ, ENCFF280GLL, ENCFF881FJP 1543260420 ENCODE Processing Pipeline 635c5e6db1994ff47891c85782daa505 https://www.encodeproject.org/files/ENCFF352OOT/@@download/ENCFF352OOT.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF934KCA bigWig fold change over control ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF241ATQ, ENCFF881FJP 1212565914 ENCODE Processing Pipeline 38d7442a51df68d0ffae263f79b29829 https://www.encodeproject.org/files/ENCFF934KCA/@@download/ENCFF934KCA.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF400PAG bigWig fold change over control ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF280GLL, ENCFF881FJP 1341180721 ENCODE Processing Pipeline ae7f2a61d34859d719cbdc6c58eb6ceb https://www.encodeproject.org/files/ENCFF400PAG/@@download/ENCFF400PAG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF211MDN bigWig fold change over control ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF241ATQ, ENCFF280GLL, ENCFF881FJP 1707246163 ENCODE Processing Pipeline c4759dd55d142fbfc14e72f91818c2c8 https://www.encodeproject.org/files/ENCFF211MDN/@@download/ENCFF211MDN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF626JGU bed narrowPeak replicated peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF040PPF, ENCFF725QUX, ENCFF813PLR 2240861 ENCODE Processing Pipeline 143836a5d5502c3f3cceb1342b55c3b7 https://www.encodeproject.org/files/ENCFF626JGU/@@download/ENCFF626JGU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF516VNQ bigBed narrowPeak replicated peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF626JGU 3731660 ENCODE Processing Pipeline 5178a3547c1022d540e714cbfc7803db https://www.encodeproject.org/files/ENCFF516VNQ/@@download/ENCFF516VNQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF494SLO bam unfiltered alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF255APX, ENCFF373VWC, ENCFF892ULL 4942066886 ENCODE Processing Pipeline 3abbb6812be84ec70ab74d2f10e4f099 https://www.encodeproject.org/files/ENCFF494SLO/@@download/ENCFF494SLO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF744DQK bam unfiltered alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF835FWW, ENCFF927HRQ 5649017845 ENCODE Processing Pipeline a4b39d95ac831402d4fb852fc7a01a1e https://www.encodeproject.org/files/ENCFF744DQK/@@download/ENCFF744DQK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF905PUB bam alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF835FWW, ENCFF927HRQ 3104809019 ENCODE Processing Pipeline b4e8cadfb9de9f3637efbeb73265e7bf https://www.encodeproject.org/files/ENCFF905PUB/@@download/ENCFF905PUB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF838YSJ bam alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF255APX, ENCFF373VWC, ENCFF892ULL 2860764751 ENCODE Processing Pipeline 017efe191a6b6935b9bb5c67840cfc48 https://www.encodeproject.org/files/ENCFF838YSJ/@@download/ENCFF838YSJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF613GIX bed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF838YSJ 2422587 ENCODE Processing Pipeline c296ad438957d015ceda5f377d1d984e https://www.encodeproject.org/files/ENCFF613GIX/@@download/ENCFF613GIX.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF423XDD bed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF905PUB 2617768 ENCODE Processing Pipeline 72f72cd9cf0599ce7d5ab911c276ec6d https://www.encodeproject.org/files/ENCFF423XDD/@@download/ENCFF423XDD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF441WQN bed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF838YSJ, ENCFF905PUB 2640533 ENCODE Processing Pipeline 11f90c9add22f6514bef5029f3750d1e https://www.encodeproject.org/files/ENCFF441WQN/@@download/ENCFF441WQN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF707EYP bigBed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF423XDD 5873613 ENCODE Processing Pipeline 1fe36ce821209ecc444f26b30b16d3a1 https://www.encodeproject.org/files/ENCFF707EYP/@@download/ENCFF707EYP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF020UJX bigBed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF441WQN 5769011 ENCODE Processing Pipeline 4c26d5e03cd3759fd25dfd65fa4714e8 https://www.encodeproject.org/files/ENCFF020UJX/@@download/ENCFF020UJX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF187CWG bigBed narrowPeak peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF613GIX 5362675 ENCODE Processing Pipeline b4edc2226495204e19aae8f68f4a40d0 https://www.encodeproject.org/files/ENCFF187CWG/@@download/ENCFF187CWG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF433IYS bigWig signal p-value ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF838YSJ 1061150434 ENCODE Processing Pipeline 1e4809580a74cfa22cee5a319ca6c2d0 https://www.encodeproject.org/files/ENCFF433IYS/@@download/ENCFF433IYS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF015PRB bigWig signal p-value ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF905PUB 995999889 ENCODE Processing Pipeline 99a3b04a0a64dad19262210f876dbb92 https://www.encodeproject.org/files/ENCFF015PRB/@@download/ENCFF015PRB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF844SLJ bigWig signal p-value ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF838YSJ, ENCFF905PUB 1363422853 ENCODE Processing Pipeline 2c1a3307097942d5b95cb710d4d46fdd https://www.encodeproject.org/files/ENCFF844SLJ/@@download/ENCFF844SLJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF576NML bigWig fold change over control ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF838YSJ 1206335410 ENCODE Processing Pipeline c449daa6c8e3b61e707b774726c247a6 https://www.encodeproject.org/files/ENCFF576NML/@@download/ENCFF576NML.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF436ZKU bigWig fold change over control ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF905PUB 1326412118 ENCODE Processing Pipeline 3d157b8fa2ac5b2d1932c51443c22c27 https://www.encodeproject.org/files/ENCFF436ZKU/@@download/ENCFF436ZKU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF397XOU bigWig fold change over control ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF838YSJ, ENCFF905PUB 1749600374 ENCODE Processing Pipeline cbe198fe0b1c4d0d44bb61c1af9a1ef0 https://www.encodeproject.org/files/ENCFF397XOU/@@download/ENCFF397XOU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF706TOV bed narrowPeak replicated peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF423XDD, ENCFF441WQN, ENCFF613GIX 2180747 ENCODE Processing Pipeline 7cc52cb2d547b89a01cb0afa93988667 https://www.encodeproject.org/files/ENCFF706TOV/@@download/ENCFF706TOV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF958SFL bigBed narrowPeak replicated peaks ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF706TOV 3621936 ENCODE Processing Pipeline b9f76f6c42e9f61ccfc1c4155271bc77 https://www.encodeproject.org/files/ENCFF958SFL/@@download/ENCFF958SFL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KSG bam alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KSR 363604528 Bing Ren, UCSD e794922fd6319a6c0faab646ccbf722a https://www.encodeproject.org/files/ENCFF001KSG/@@download/ENCFF001KSG.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF001KSI bam alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KSU 381553195 Bing Ren, UCSD 2afc823e5d0ddfec085326f8d2eb50fe https://www.encodeproject.org/files/ENCFF001KSI/@@download/ENCFF001KSI.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF001KSK bigBed broadPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYR 301291 Bing Ren, UCSD d37397d5da3e6d606fcfe8d3d859332b https://www.encodeproject.org/files/ENCFF001KSK/@@download/ENCFF001KSK.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF001KSL bigWig signal ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSG, ENCFF001KSI 3257064 Bing Ren, UCSD 103b8cbaff3a5878a512a9ba9827db47 https://www.encodeproject.org/files/ENCFF001KSL/@@download/ENCFF001KSL.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF001KSR fastq reads ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 486728418 Bing Ren, UCSD 3d9b2c3939751762460888133550ca71 https://www.encodeproject.org/files/ENCFF001KSR/@@download/ENCFF001KSR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KTC/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF001KSU fastq reads ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 515001104 Bing Ren, UCSD 70f16fb5d978684934299995d8091870 https://www.encodeproject.org/files/ENCFF001KSU/@@download/ENCFF001KSU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KTF/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF001XYR bed broadPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSG, ENCFF001KSI 186230 Bing Ren, UCSD 8e86b72cad317b1f45251531b979bef0 https://www.encodeproject.org/files/ENCFF001XYR/@@download/ENCFF001XYR.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF692BFZ bam unfiltered alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSU, ENCFF018NEO 441891612 ENCODE Processing Pipeline 8be19e12805603d5b6474a3a3fdbf930 https://www.encodeproject.org/files/ENCFF692BFZ/@@download/ENCFF692BFZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF798RKU bam unfiltered alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KSR, ENCFF018NEO 419812432 ENCODE Processing Pipeline af61c7b5abcab0684e4f096c30870dee https://www.encodeproject.org/files/ENCFF798RKU/@@download/ENCFF798RKU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF308QYS bam alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSU, ENCFF018NEO 181143176 ENCODE Processing Pipeline c7536dd2ac021047a350a8c043f7f9af https://www.encodeproject.org/files/ENCFF308QYS/@@download/ENCFF308QYS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF392SGZ bam alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KSR, ENCFF018NEO 183201264 ENCODE Processing Pipeline afebbfd0a3becbf26d11599110d4c97d https://www.encodeproject.org/files/ENCFF392SGZ/@@download/ENCFF392SGZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF397KXQ bigBed narrowPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF896XNT 1354511 ENCODE Processing Pipeline 23d8f8e0e2de9c26adaa37b26eabfa7b https://www.encodeproject.org/files/ENCFF397KXQ/@@download/ENCFF397KXQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF325ZIX bigWig signal p-value ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF392SGZ, ENCFF674KWP, ENCFF914TSC 205739964 ENCODE Processing Pipeline 37daf510b607914841533a85eb298c81 https://www.encodeproject.org/files/ENCFF325ZIX/@@download/ENCFF325ZIX.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF839SWI bigBed narrowPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF797RDH 1423150 ENCODE Processing Pipeline afb864cde702e57f7e512e11f242ba63 https://www.encodeproject.org/files/ENCFF839SWI/@@download/ENCFF839SWI.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF877GOE bigWig signal p-value ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF308QYS, ENCFF674KWP, ENCFF914TSC 204248145 ENCODE Processing Pipeline 2e2714ac8a5ba5dc1672fc8bd53a4460 https://www.encodeproject.org/files/ENCFF877GOE/@@download/ENCFF877GOE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF110QHL bigWig signal p-value ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF308QYS, ENCFF392SGZ, ENCFF674KWP, ENCFF914TSC 219834108 ENCODE Processing Pipeline 117cd764215e7f1ce0fa2023001f4a4b https://www.encodeproject.org/files/ENCFF110QHL/@@download/ENCFF110QHL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF874GEM bigWig fold change over control ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF392SGZ, ENCFF674KWP, ENCFF914TSC 44121093 ENCODE Processing Pipeline b8561292842ca603a79afaf847d39637 https://www.encodeproject.org/files/ENCFF874GEM/@@download/ENCFF874GEM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF893ZGR bigWig fold change over control ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF308QYS, ENCFF674KWP, ENCFF914TSC 41747495 ENCODE Processing Pipeline f07c99ceead499e3e9d5c4befe92d6e1 https://www.encodeproject.org/files/ENCFF893ZGR/@@download/ENCFF893ZGR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF235ZAJ bigWig fold change over control ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF308QYS, ENCFF392SGZ, ENCFF674KWP, ENCFF914TSC 60776221 ENCODE Processing Pipeline 1d50b5b38df5129d8f88d58ffa7c7f94 https://www.encodeproject.org/files/ENCFF235ZAJ/@@download/ENCFF235ZAJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF162ECY bigBed narrowPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF087XCX 1407113 ENCODE Processing Pipeline c06bd23fcf1e53dbdd15c89df0803228 https://www.encodeproject.org/files/ENCFF162ECY/@@download/ENCFF162ECY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF433EPD bigBed narrowPeak replicated peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF394WSH 1322164 ENCODE Processing Pipeline 720a9ecdda74d48657d767d65dc81f6b https://www.encodeproject.org/files/ENCFF433EPD/@@download/ENCFF433EPD.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF087XCX bed narrowPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF392SGZ, ENCFF674KWP, ENCFF914TSC 421705 ENCODE Processing Pipeline b13d47f653eab36a43d017907eeba97c https://www.encodeproject.org/files/ENCFF087XCX/@@download/ENCFF087XCX.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF896XNT bed narrowPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF308QYS, ENCFF674KWP, ENCFF914TSC 391767 ENCODE Processing Pipeline e256acdaacb07e515e063218d5f18d0c https://www.encodeproject.org/files/ENCFF896XNT/@@download/ENCFF896XNT.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF797RDH bed narrowPeak peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF308QYS, ENCFF392SGZ, ENCFF674KWP, ENCFF914TSC 449831 ENCODE Processing Pipeline dadd427ff1640270549ccaf34730748f https://www.encodeproject.org/files/ENCFF797RDH/@@download/ENCFF797RDH.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF394WSH bed narrowPeak replicated peaks ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF087XCX, ENCFF797RDH, ENCFF896XNT 525406 ENCODE Processing Pipeline c10995d7b163b4329dcecd8fd0e622df https://www.encodeproject.org/files/ENCFF394WSH/@@download/ENCFF394WSH.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF933GIU fastq reads ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 1594482020 Bing Ren, UCSD eaa5e1be8f6a1e6ccd548c871eb1e8cd SRA:SRR3652472 https://www.encodeproject.org/files/ENCFF933GIU/@@download/ENCFF933GIU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYA/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF179YKG fastq reads ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 36 single-ended 415186894 Bing Ren, UCSD 06f4c933c069d2c938b365bc5b771f24 SRA:SRR3652473 https://www.encodeproject.org/files/ENCFF179YKG/@@download/ENCFF179YKG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYA/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF306TWP fastq reads ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1840828243 Bing Ren, UCSD 65ae6ab4600663f3a54bbf2a10761fec SRA:SRR3652474 https://www.encodeproject.org/files/ENCFF306TWP/@@download/ENCFF306TWP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXY/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF154XLL bam alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF179YKG, ENCFF806TVZ, ENCFF933GIU 991970246 ENCODE Processing Pipeline 16b49272d4d8a88ded4c3d2dd3962055 https://www.encodeproject.org/files/ENCFF154XLL/@@download/ENCFF154XLL.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF675WAT bam alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF306TWP, ENCFF806TVZ 1071482470 ENCODE Processing Pipeline 5bc9a823006b81e1efdeffb96def680b https://www.encodeproject.org/files/ENCFF675WAT/@@download/ENCFF675WAT.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF027TDE bed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF675WAT 515079 ENCODE Processing Pipeline 815add8c7b36d6c22f0566cee7cf27a4 https://www.encodeproject.org/files/ENCFF027TDE/@@download/ENCFF027TDE.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF778MMI bed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF154XLL, ENCFF675WAT 314348 ENCODE Processing Pipeline 64b9d2bc3b69307530099886842ea859 https://www.encodeproject.org/files/ENCFF778MMI/@@download/ENCFF778MMI.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF850ZET bigBed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF697RHU 2037821 ENCODE Processing Pipeline 762d00dc146fad8d86bf483f5b8b6a0d https://www.encodeproject.org/files/ENCFF850ZET/@@download/ENCFF850ZET.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF697RHU bed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF154XLL 883792 ENCODE Processing Pipeline 3d2b8646e3ac3c2b993455eaa4dc49ba https://www.encodeproject.org/files/ENCFF697RHU/@@download/ENCFF697RHU.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF954ZGJ bigBed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF778MMI 857953 ENCODE Processing Pipeline e9194a0e43fab4d9ef89e350e6346287 https://www.encodeproject.org/files/ENCFF954ZGJ/@@download/ENCFF954ZGJ.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF063VUN bigWig signal p-value ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF675WAT 571877364 ENCODE Processing Pipeline c2147487f2a48130495e778bc8bd28c5 https://www.encodeproject.org/files/ENCFF063VUN/@@download/ENCFF063VUN.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF159EKE bigBed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF027TDE 1055813 ENCODE Processing Pipeline d74bd719ffb9234af1f6fab2cd6c139d https://www.encodeproject.org/files/ENCFF159EKE/@@download/ENCFF159EKE.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF499IHL bigWig signal p-value ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF154XLL 415986583 ENCODE Processing Pipeline 9d5705c9be9193e209c65eff348d957b https://www.encodeproject.org/files/ENCFF499IHL/@@download/ENCFF499IHL.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF920DBA bigWig signal p-value ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF154XLL, ENCFF675WAT 551262915 ENCODE Processing Pipeline 2f97d37d5879a01ad7e3f424f6df2e0c https://www.encodeproject.org/files/ENCFF920DBA/@@download/ENCFF920DBA.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF462FZU bigWig fold change over control ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF154XLL, ENCFF675WAT 787324305 ENCODE Processing Pipeline fc9d08ba3839f211d223862802e23f49 https://www.encodeproject.org/files/ENCFF462FZU/@@download/ENCFF462FZU.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF084RZI bigWig fold change over control ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF154XLL 477038499 ENCODE Processing Pipeline 6278d9b55580cb884584f808e317245d https://www.encodeproject.org/files/ENCFF084RZI/@@download/ENCFF084RZI.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF200JZB bigWig fold change over control ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF675WAT 520089528 ENCODE Processing Pipeline 4e2cc1fb5fa84005f4da3f345306a640 https://www.encodeproject.org/files/ENCFF200JZB/@@download/ENCFF200JZB.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF960GYN bed narrowPeak replicated peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF027TDE, ENCFF697RHU, ENCFF778MMI 285839 ENCODE Processing Pipeline bb99a4ff03771cc206aa5a955d7747b8 https://www.encodeproject.org/files/ENCFF960GYN/@@download/ENCFF960GYN.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF665ATG bigBed narrowPeak replicated peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF960GYN 575751 ENCODE Processing Pipeline 8a154715a285240afd21e377deb583fd https://www.encodeproject.org/files/ENCFF665ATG/@@download/ENCFF665ATG.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF688YAF bam unfiltered alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF306TWP 2346547419 ENCODE Processing Pipeline 6677642494ae4cfe52ba8409a75a665d https://www.encodeproject.org/files/ENCFF688YAF/@@download/ENCFF688YAF.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF890FYE bam unfiltered alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF179YKG, ENCFF933GIU 2537266239 ENCODE Processing Pipeline 065f19d860e3eca0b23e4c94d23f53d4 https://www.encodeproject.org/files/ENCFF890FYE/@@download/ENCFF890FYE.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF380FIJ bam alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF306TWP 1070962642 ENCODE Processing Pipeline 847d9161023e165361861c07da81706a https://www.encodeproject.org/files/ENCFF380FIJ/@@download/ENCFF380FIJ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF740KNN bam alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF179YKG, ENCFF933GIU 991404571 ENCODE Processing Pipeline f841245116007d089d34980b0a9c4804 https://www.encodeproject.org/files/ENCFF740KNN/@@download/ENCFF740KNN.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF108FOT bed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF018HYW, ENCFF740KNN, ENCFF855ISH 891139 ENCODE Processing Pipeline 79fa1b675c6f0dc9109b8bca5f8e6f87 https://www.encodeproject.org/files/ENCFF108FOT/@@download/ENCFF108FOT.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF236LCR bed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF380FIJ, ENCFF855ISH 62427 ENCODE Processing Pipeline e5ae63262b9a46aa48a519e877e91be1 https://www.encodeproject.org/files/ENCFF236LCR/@@download/ENCFF236LCR.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF054ZCF bed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF018HYW, ENCFF380FIJ, ENCFF740KNN, ENCFF855ISH 327342 ENCODE Processing Pipeline ebdd19786850aeb51464aaaafb5ea41f https://www.encodeproject.org/files/ENCFF054ZCF/@@download/ENCFF054ZCF.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF047XRC bigWig fold change over control ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF018HYW, ENCFF740KNN, ENCFF855ISH 476015570 ENCODE Processing Pipeline 7a3f6bab603ea4c7a1efc7748e141365 https://www.encodeproject.org/files/ENCFF047XRC/@@download/ENCFF047XRC.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF564SXS bigWig signal p-value ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF018HYW, ENCFF380FIJ, ENCFF740KNN, ENCFF855ISH 553796613 ENCODE Processing Pipeline 48afa0242fbbbfce310b9a4da3ebb2ec https://www.encodeproject.org/files/ENCFF564SXS/@@download/ENCFF564SXS.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF157XUV bigBed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF108FOT 2052604 ENCODE Processing Pipeline db6dd1e99c96c778d5ecba5ec5b94249 https://www.encodeproject.org/files/ENCFF157XUV/@@download/ENCFF157XUV.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF145SZQ bigWig signal p-value ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF018HYW, ENCFF740KNN, ENCFF855ISH 479281101 ENCODE Processing Pipeline 72d81256d7fc58b51cb4ea6b0c18d54d https://www.encodeproject.org/files/ENCFF145SZQ/@@download/ENCFF145SZQ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF571VWO bigWig fold change over control ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF380FIJ, ENCFF855ISH 404894747 ENCODE Processing Pipeline 3214d72ecb0031c911296a221adda4fc https://www.encodeproject.org/files/ENCFF571VWO/@@download/ENCFF571VWO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF318FCK bigBed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF236LCR 246647 ENCODE Processing Pipeline 7cfc90fa52af91afcd1eb52503e70b83 https://www.encodeproject.org/files/ENCFF318FCK/@@download/ENCFF318FCK.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF382AAK bigBed narrowPeak peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF054ZCF 888129 ENCODE Processing Pipeline 9379ec3d3209d91c847347d097b49f87 https://www.encodeproject.org/files/ENCFF382AAK/@@download/ENCFF382AAK.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF841XVM bigBed narrowPeak replicated peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF745NLF 654869 ENCODE Processing Pipeline caca223c74ce99420a330b7abfc61f4e https://www.encodeproject.org/files/ENCFF841XVM/@@download/ENCFF841XVM.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF207TUO bigWig signal p-value ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF380FIJ, ENCFF855ISH 285959164 ENCODE Processing Pipeline 63c435397cab88269dfbcf3ef728810f https://www.encodeproject.org/files/ENCFF207TUO/@@download/ENCFF207TUO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF828TZR bigWig fold change over control ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF018HYW, ENCFF380FIJ, ENCFF740KNN, ENCFF855ISH 789655573 ENCODE Processing Pipeline 03fb808a5d003b5a9efe8b4f6204edd6 https://www.encodeproject.org/files/ENCFF828TZR/@@download/ENCFF828TZR.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF745NLF bed narrowPeak replicated peaks ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF054ZCF, ENCFF108FOT, ENCFF236LCR 254026 ENCODE Processing Pipeline bdb553b7870fdc76725c59592033ee25 https://www.encodeproject.org/files/ENCFF745NLF/@@download/ENCFF745NLF.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF001NJJ bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NJO 426920663 Michael Snyder, Stanford a182b6417cbd2971926cd62740c5e603 https://www.encodeproject.org/files/ENCFF001NJJ/@@download/ENCFF001NJJ.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NJK bigBed narrowPeak peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIH 293976 Michael Snyder, Stanford ec97afb6999e4c97be7a782cab18c63e https://www.encodeproject.org/files/ENCFF001NJK/@@download/ENCFF001NJK.bigBed mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NJL bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NJM 572918606 Michael Snyder, Stanford a64393d54bcd0a2a9c1a694687e759f4 https://www.encodeproject.org/files/ENCFF001NJL/@@download/ENCFF001NJL.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NJM fastq reads ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 1130929730 Michael Snyder, Stanford c7d2b85ab4668b64adb68ff65bdfe104 https://www.encodeproject.org/files/ENCFF001NJM/@@download/ENCFF001NJM.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NJO fastq reads ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 935811781 Michael Snyder, Stanford 21ecfac1fa32f33b4fe504eb48841969 https://www.encodeproject.org/files/ENCFF001NJO/@@download/ENCFF001NJO.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NJQ bigWig signal ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NJJ, ENCFF001NJL 222287033 Michael Snyder, Stanford b30b74f017740bfab255aa9720489f35 https://www.encodeproject.org/files/ENCFF001NJQ/@@download/ENCFF001NJQ.bigWig mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001YIH bed narrowPeak peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NJJ, ENCFF001NJL 92399 Michael Snyder, Stanford 25fcf9f468f89ce80bb2b9cf64e94902 https://www.encodeproject.org/files/ENCFF001YIH/@@download/ENCFF001YIH.bed.gz mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF560UGO bam unfiltered alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NJO, ENCFF018NEO 999173510 ENCODE Processing Pipeline 316b36503f2855bb5c8ba65e9ce73fc5 https://www.encodeproject.org/files/ENCFF560UGO/@@download/ENCFF560UGO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF914XPZ bam unfiltered alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NJM, ENCFF018NEO 1241518113 ENCODE Processing Pipeline 6f9e55c96cb16a0b91b472573858f81d https://www.encodeproject.org/files/ENCFF914XPZ/@@download/ENCFF914XPZ.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF427KEM bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NJO, ENCFF018NEO 587971203 ENCODE Processing Pipeline b101ed07ed6be0471a88178ed0ce7d49 https://www.encodeproject.org/files/ENCFF427KEM/@@download/ENCFF427KEM.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF325VBN bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NJM, ENCFF018NEO 785943349 ENCODE Processing Pipeline 904931ab9c2578e9b518f611c52a086c https://www.encodeproject.org/files/ENCFF325VBN/@@download/ENCFF325VBN.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF935SQE bigWig signal p-value ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF325VBN, ENCFF339ZWC 244628388 ENCODE Processing Pipeline ad9fd8824303b02218f540267e4d8a87 https://www.encodeproject.org/files/ENCFF935SQE/@@download/ENCFF935SQE.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF193MPU bigWig signal p-value ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF427KEM 234849950 ENCODE Processing Pipeline b5d2c64a709d6357996c767e09878e46 https://www.encodeproject.org/files/ENCFF193MPU/@@download/ENCFF193MPU.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF255QKF bigWig fold change over control ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF325VBN, ENCFF339ZWC 311388025 ENCODE Processing Pipeline c2fe7a22588545e4e6306ff92615eedb https://www.encodeproject.org/files/ENCFF255QKF/@@download/ENCFF255QKF.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF090BJH bigWig signal p-value ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325VBN, ENCFF339ZWC, ENCFF427KEM 217045747 ENCODE Processing Pipeline 22859f7716d3201beac0b8ad96b6f0df https://www.encodeproject.org/files/ENCFF090BJH/@@download/ENCFF090BJH.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF023XHT bigWig fold change over control ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF427KEM 242538179 ENCODE Processing Pipeline e651cc3db48ea0a5b0605706c1f6d70c https://www.encodeproject.org/files/ENCFF023XHT/@@download/ENCFF023XHT.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF781YMH bed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF427KEM 417278 ENCODE Processing Pipeline bd12206913d57708f0a924bf48d9c880 https://www.encodeproject.org/files/ENCFF781YMH/@@download/ENCFF781YMH.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF384FWP bed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF325VBN, ENCFF339ZWC 43570 ENCODE Processing Pipeline c191765b55dbff9034d5300f45420027 https://www.encodeproject.org/files/ENCFF384FWP/@@download/ENCFF384FWP.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF984MWK bed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325VBN, ENCFF339ZWC, ENCFF427KEM 5035860 ENCODE Processing Pipeline b11e320ca4ecf2e45101201fac69f1a0 https://www.encodeproject.org/files/ENCFF984MWK/@@download/ENCFF984MWK.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF247FXG bigBed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF384FWP 158037 ENCODE Processing Pipeline d0a59f5fc1592625ff6c6adaf308a6fa https://www.encodeproject.org/files/ENCFF247FXG/@@download/ENCFF247FXG.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF985RMX bigWig fold change over control ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF325VBN, ENCFF339ZWC, ENCFF427KEM 487365407 ENCODE Processing Pipeline caf0fdedc92ac52163d1fd7528aab470 https://www.encodeproject.org/files/ENCFF985RMX/@@download/ENCFF985RMX.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF308KKH bigBed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF984MWK 10737348 ENCODE Processing Pipeline e4424cd8765526462b7851a23ed20174 https://www.encodeproject.org/files/ENCFF308KKH/@@download/ENCFF308KKH.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF628MEQ bigBed narrowPeak peaks and background as input for IDR ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF781YMH 915801 ENCODE Processing Pipeline 28defc428e572cec139c9873dc3c1ded https://www.encodeproject.org/files/ENCFF628MEQ/@@download/ENCFF628MEQ.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF601YVA bed narrowPeak conservative idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF384FWP, ENCFF547MET, ENCFF781YMH, ENCFF984MWK 6873 ENCODE Processing Pipeline 81cb43dd6e877a3fc71b9d4b5b3ce073 https://www.encodeproject.org/files/ENCFF601YVA/@@download/ENCFF601YVA.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF093MTA bed narrowPeak optimal idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF384FWP, ENCFF547MET, ENCFF781YMH, ENCFF984MWK 41438 ENCODE Processing Pipeline a2c63956a67640d8a72b455b55ea7f4c https://www.encodeproject.org/files/ENCFF093MTA/@@download/ENCFF093MTA.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF317WRC bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF601YVA 55161 ENCODE Processing Pipeline 18ff61ac7586218ea3165ce7b4c41126 https://www.encodeproject.org/files/ENCFF317WRC/@@download/ENCFF317WRC.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF617TOO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF093MTA 120946 ENCODE Processing Pipeline 92e04ad129a450d04a34c6bcc31b422e https://www.encodeproject.org/files/ENCFF617TOO/@@download/ENCFF617TOO.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF002AMD fastq reads ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 992418821 Bing Ren, UCSD 3cbf55f3ad30f02214daeed69caeaedd SRA:SRR3651516 https://www.encodeproject.org/files/ENCFF002AMD/@@download/ENCFF002AMD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, control low read depth, low read depth ENCFF002AME fastq reads ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1012914257 Bing Ren, UCSD 46be7bfbac1a91252ae65f33ec2698c5 SRA:SRR3651517 https://www.encodeproject.org/files/ENCFF002AME/@@download/ENCFF002AME.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, control low read depth, low read depth ENCFF506WYL bam alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AME, ENCFF806TVZ 692870803 ENCODE Processing Pipeline a72e6ac4f08a1bda794735a69dab675f https://www.encodeproject.org/files/ENCFF506WYL/@@download/ENCFF506WYL.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF596JCW bam alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMD, ENCFF806TVZ 663990816 ENCODE Processing Pipeline 5586b8fd63c0cd9a05b0d7a71ccbcfb1 https://www.encodeproject.org/files/ENCFF596JCW/@@download/ENCFF596JCW.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF156BPQ bed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF506WYL 498777 ENCODE Processing Pipeline 6fdde94857ffdd493ac3c99e653d12ac https://www.encodeproject.org/files/ENCFF156BPQ/@@download/ENCFF156BPQ.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF457JGK bed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF528CCC, ENCFF596JCW 470583 ENCODE Processing Pipeline 609ca4f80b85dd6d2fc655188576aae1 https://www.encodeproject.org/files/ENCFF457JGK/@@download/ENCFF457JGK.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF561OGC bed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF506WYL, ENCFF528CCC, ENCFF596JCW 501796 ENCODE Processing Pipeline 85785574e5de84c61555f900e8c6926f https://www.encodeproject.org/files/ENCFF561OGC/@@download/ENCFF561OGC.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF887PGE bigBed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF457JGK 1590021 ENCODE Processing Pipeline e9f80aa0b582c109dc9656d3496f1441 https://www.encodeproject.org/files/ENCFF887PGE/@@download/ENCFF887PGE.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF890RAU bigWig signal p-value ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF528CCC, ENCFF596JCW 237593364 ENCODE Processing Pipeline c9b447af8a822a4e08ec2401c583a78f https://www.encodeproject.org/files/ENCFF890RAU/@@download/ENCFF890RAU.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF677BSO bigBed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156BPQ 1655607 ENCODE Processing Pipeline 587a4049007125027daaba9a4b8897bf https://www.encodeproject.org/files/ENCFF677BSO/@@download/ENCFF677BSO.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF676RAQ bigBed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF561OGC 1656171 ENCODE Processing Pipeline 11a4faab4e5cea581fbed34bbc20c733 https://www.encodeproject.org/files/ENCFF676RAQ/@@download/ENCFF676RAQ.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF869CEF bigWig signal p-value ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF506WYL 279000741 ENCODE Processing Pipeline dd8f607c6cef528da33c0c913e5da402 https://www.encodeproject.org/files/ENCFF869CEF/@@download/ENCFF869CEF.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF952OYU bigWig signal p-value ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF506WYL, ENCFF528CCC, ENCFF596JCW 509732929 ENCODE Processing Pipeline 9772936184c4479e7ccf62f6399820a2 https://www.encodeproject.org/files/ENCFF952OYU/@@download/ENCFF952OYU.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF827BIW bigWig fold change over control ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF506WYL 274056166 ENCODE Processing Pipeline 73ee7e345756f2e48d6c58be8b823376 https://www.encodeproject.org/files/ENCFF827BIW/@@download/ENCFF827BIW.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF115ILE bigWig fold change over control ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF528CCC, ENCFF596JCW 251468375 ENCODE Processing Pipeline 444cc16daa32b47280890fd0fcf7e64d https://www.encodeproject.org/files/ENCFF115ILE/@@download/ENCFF115ILE.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF037UGA bigWig fold change over control ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF351THT, ENCFF506WYL, ENCFF528CCC, ENCFF596JCW 535899124 ENCODE Processing Pipeline 68b311bf84cd47ccaaa222ec9869c3f2 https://www.encodeproject.org/files/ENCFF037UGA/@@download/ENCFF037UGA.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF504TLY bigBed narrowPeak replicated peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF474NWU 1429076 ENCODE Processing Pipeline 922af89829103359403581069edcf980 https://www.encodeproject.org/files/ENCFF504TLY/@@download/ENCFF504TLY.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF474NWU bed narrowPeak replicated peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156BPQ, ENCFF457JGK, ENCFF561OGC 558024 ENCODE Processing Pipeline 422c5f1912ad820eb581f11cd6d6a8c4 https://www.encodeproject.org/files/ENCFF474NWU/@@download/ENCFF474NWU.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF391UDH bam unfiltered alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AME, ENCFF018NEO 1037365255 ENCODE Processing Pipeline 4112a7d0f1506b2d1c8326a4b4c913ad https://www.encodeproject.org/files/ENCFF391UDH/@@download/ENCFF391UDH.bam mm10 released low read length, control low read depth, low read depth ENCFF940IFU bam unfiltered alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMD, ENCFF018NEO 993969840 ENCODE Processing Pipeline cca4db7c45afd77cf92505ca83018664 https://www.encodeproject.org/files/ENCFF940IFU/@@download/ENCFF940IFU.bam mm10 released low read length, control low read depth, low read depth ENCFF633VWI bam alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMD, ENCFF018NEO 663864784 ENCODE Processing Pipeline df0f3306cdd1e7c1140480022a98c239 https://www.encodeproject.org/files/ENCFF633VWI/@@download/ENCFF633VWI.bam mm10 released low read length, control low read depth, low read depth ENCFF072OAK bam alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AME, ENCFF018NEO 692653159 ENCODE Processing Pipeline 97499107591dc210ec1e08a9a5611d3e https://www.encodeproject.org/files/ENCFF072OAK/@@download/ENCFF072OAK.bam mm10 released low read length, control low read depth, low read depth ENCFF117RZH bed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF072OAK, ENCFF411XWG 499438 ENCODE Processing Pipeline f2a852426996282f4a6a56b89c9b42f4 https://www.encodeproject.org/files/ENCFF117RZH/@@download/ENCFF117RZH.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF162WQR bed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF633VWI 470904 ENCODE Processing Pipeline 3b8014004ddbb19af43aa0b9e7213a66 https://www.encodeproject.org/files/ENCFF162WQR/@@download/ENCFF162WQR.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF323HXD bed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF072OAK, ENCFF411XWG, ENCFF633VWI 502159 ENCODE Processing Pipeline b8bf94498f3b6b00ec8b8df5f16df70a https://www.encodeproject.org/files/ENCFF323HXD/@@download/ENCFF323HXD.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF191OUH bigBed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF117RZH 1658295 ENCODE Processing Pipeline fdf07c592682d277a683c09456a6ad28 https://www.encodeproject.org/files/ENCFF191OUH/@@download/ENCFF191OUH.bigBed mm10 released low read length, control low read depth, low read depth ENCFF996CHT bigBed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF162WQR 1591758 ENCODE Processing Pipeline d6f8bd0f3cd30599af16e5c18f77c410 https://www.encodeproject.org/files/ENCFF996CHT/@@download/ENCFF996CHT.bigBed mm10 released low read length, control low read depth, low read depth ENCFF531OLN bigBed narrowPeak peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF323HXD 1659193 ENCODE Processing Pipeline bab8f0402a037e344938fc7f1b2a4344 https://www.encodeproject.org/files/ENCFF531OLN/@@download/ENCFF531OLN.bigBed mm10 released low read length, control low read depth, low read depth ENCFF969ESS bigWig signal p-value ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF072OAK, ENCFF411XWG 278839370 ENCODE Processing Pipeline 7827d8691e523937c8fbd9610d85ca8e https://www.encodeproject.org/files/ENCFF969ESS/@@download/ENCFF969ESS.bigWig mm10 released low read length, control low read depth, low read depth ENCFF845QER bigWig signal p-value ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF633VWI 279065012 ENCODE Processing Pipeline 42b08819599c6678c67bdcb474560bbe https://www.encodeproject.org/files/ENCFF845QER/@@download/ENCFF845QER.bigWig mm10 released low read length, control low read depth, low read depth ENCFF653JUH bigWig signal p-value ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF072OAK, ENCFF411XWG, ENCFF633VWI 542872980 ENCODE Processing Pipeline cbecf0d0de4854380fb9abe0532aa2c6 https://www.encodeproject.org/files/ENCFF653JUH/@@download/ENCFF653JUH.bigWig mm10 released low read length, control low read depth, low read depth ENCFF538NKU bigWig fold change over control ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF072OAK, ENCFF411XWG 270358371 ENCODE Processing Pipeline 5242c4616ed700dacc1ec1d3e9177a4b https://www.encodeproject.org/files/ENCFF538NKU/@@download/ENCFF538NKU.bigWig mm10 released low read length, control low read depth, low read depth ENCFF616YQD bigWig fold change over control ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF633VWI 251608531 ENCODE Processing Pipeline 565ad2518699d0309a8ea98e3450ba15 https://www.encodeproject.org/files/ENCFF616YQD/@@download/ENCFF616YQD.bigWig mm10 released low read length, control low read depth, low read depth ENCFF465QRZ bigWig fold change over control ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF072OAK, ENCFF411XWG, ENCFF633VWI 535515553 ENCODE Processing Pipeline 0a3bec2b3849a765a2d5ecc8b23af249 https://www.encodeproject.org/files/ENCFF465QRZ/@@download/ENCFF465QRZ.bigWig mm10 released low read length, control low read depth, low read depth ENCFF929PME bed narrowPeak replicated peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF117RZH, ENCFF162WQR, ENCFF323HXD 559183 ENCODE Processing Pipeline 43f84b007367071d4cc43728852cce6d https://www.encodeproject.org/files/ENCFF929PME/@@download/ENCFF929PME.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF260BSX bigBed narrowPeak replicated peaks ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF929PME 1431679 ENCODE Processing Pipeline 1c36675267c94602c995b0dc6b27d9d9 https://www.encodeproject.org/files/ENCFF260BSX/@@download/ENCFF260BSX.bigBed mm10 released low read length, control low read depth, low read depth ENCFF341CBP fastq reads ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1697377108 Bing Ren, UCSD 0b9afece5105e017ec7212d2a47f40b6 SRA:SRR3652278 https://www.encodeproject.org/files/ENCFF341CBP/@@download/ENCFF341CBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms ENCFF589QAZ fastq reads ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1992454297 Bing Ren, UCSD fc171acb902be5f36e301e220b492ad9 SRA:SRR3652277 https://www.encodeproject.org/files/ENCFF589QAZ/@@download/ENCFF589QAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms ENCFF016QFW bam alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF589QAZ, ENCFF806TVZ 1562567777 ENCODE Processing Pipeline 3c4fa691bd56d270601bbe2e956b33cb https://www.encodeproject.org/files/ENCFF016QFW/@@download/ENCFF016QFW.bam mm10-minimal archived inconsistent platforms ENCFF227WOS bam alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF341CBP, ENCFF806TVZ 1388096239 ENCODE Processing Pipeline ca00366351847d167d967771bd5d0cbb https://www.encodeproject.org/files/ENCFF227WOS/@@download/ENCFF227WOS.bam mm10-minimal archived inconsistent platforms ENCFF577AYZ bed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF227WOS, ENCFF711NEU 546520 ENCODE Processing Pipeline f1a21195104c5e306d1a05d102ea58cb https://www.encodeproject.org/files/ENCFF577AYZ/@@download/ENCFF577AYZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF123SIN bed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF016QFW, ENCFF236JLN 567200 ENCODE Processing Pipeline 59d29f96d229e5fcbe748a546cb0dd22 https://www.encodeproject.org/files/ENCFF123SIN/@@download/ENCFF123SIN.bed.gz mm10-minimal archived inconsistent platforms ENCFF993XIM bed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF016QFW, ENCFF227WOS, ENCFF236JLN, ENCFF711NEU 625210 ENCODE Processing Pipeline 9dbc68ed50f6f94e3dc67492efe71b12 https://www.encodeproject.org/files/ENCFF993XIM/@@download/ENCFF993XIM.bed.gz mm10-minimal archived inconsistent platforms ENCFF787KLN bigBed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF123SIN 1839930 ENCODE Processing Pipeline b4841770a5f044cf0191d56654bd0e13 https://www.encodeproject.org/files/ENCFF787KLN/@@download/ENCFF787KLN.bigBed mm10-minimal archived inconsistent platforms ENCFF144LAY bigBed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF577AYZ 1800329 ENCODE Processing Pipeline a4443dcbfc3e64e077713dbb328b0c15 https://www.encodeproject.org/files/ENCFF144LAY/@@download/ENCFF144LAY.bigBed mm10-minimal archived inconsistent platforms ENCFF823RXR bigBed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF993XIM 1942163 ENCODE Processing Pipeline b8695e393a402142ee1aec1bc65baff4 https://www.encodeproject.org/files/ENCFF823RXR/@@download/ENCFF823RXR.bigBed mm10-minimal archived inconsistent platforms ENCFF423DKD bigWig signal p-value ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF016QFW, ENCFF236JLN 638731218 ENCODE Processing Pipeline b6173d2d751cbc5d1ea32dd5a0fe3e6c https://www.encodeproject.org/files/ENCFF423DKD/@@download/ENCFF423DKD.bigWig mm10-minimal archived inconsistent platforms ENCFF411NWC bigWig signal p-value ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF227WOS, ENCFF711NEU 444796402 ENCODE Processing Pipeline ea9a0c66266401f63818c47c3e97b083 https://www.encodeproject.org/files/ENCFF411NWC/@@download/ENCFF411NWC.bigWig mm10-minimal archived inconsistent platforms ENCFF200CZY bigWig signal p-value ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF016QFW, ENCFF227WOS, ENCFF236JLN, ENCFF711NEU 917933804 ENCODE Processing Pipeline 7e6929f0155a86a5538a69eb0ec7f4f8 https://www.encodeproject.org/files/ENCFF200CZY/@@download/ENCFF200CZY.bigWig mm10-minimal archived inconsistent platforms ENCFF793KMJ bigWig fold change over control ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF016QFW, ENCFF236JLN 575284328 ENCODE Processing Pipeline a1fb01373cf7459c21bd43add6022d69 https://www.encodeproject.org/files/ENCFF793KMJ/@@download/ENCFF793KMJ.bigWig mm10-minimal archived inconsistent platforms ENCFF726BAE bigWig fold change over control ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF227WOS, ENCFF711NEU 521303914 ENCODE Processing Pipeline c352560a78a98e65bc10c60c2cd10921 https://www.encodeproject.org/files/ENCFF726BAE/@@download/ENCFF726BAE.bigWig mm10-minimal archived inconsistent platforms ENCFF481QKC bigWig fold change over control ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF016QFW, ENCFF227WOS, ENCFF236JLN, ENCFF711NEU 1030606611 ENCODE Processing Pipeline 24b7eca61b8d79b5ee6e9d8a74c2371d https://www.encodeproject.org/files/ENCFF481QKC/@@download/ENCFF481QKC.bigWig mm10-minimal archived inconsistent platforms ENCFF492GJK bed narrowPeak replicated peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF123SIN, ENCFF577AYZ, ENCFF993XIM 660366 ENCODE Processing Pipeline 59406e8b6c7baec72eb2c9fccdb5047f https://www.encodeproject.org/files/ENCFF492GJK/@@download/ENCFF492GJK.bed.gz mm10-minimal archived inconsistent platforms ENCFF787RSM bigBed narrowPeak replicated peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF492GJK 1582224 ENCODE Processing Pipeline b55ce82838e41674e3fff942cfddb855 https://www.encodeproject.org/files/ENCFF787RSM/@@download/ENCFF787RSM.bigBed mm10-minimal archived inconsistent platforms ENCFF167UAF bam unfiltered alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF341CBP 1989312942 ENCODE Processing Pipeline c70155a7996170a566baeaaff8cf596f https://www.encodeproject.org/files/ENCFF167UAF/@@download/ENCFF167UAF.bam mm10 released inconsistent platforms ENCFF608DCQ bam unfiltered alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF589QAZ 2279466815 ENCODE Processing Pipeline d67137d950c28ec820a017d1185daf66 https://www.encodeproject.org/files/ENCFF608DCQ/@@download/ENCFF608DCQ.bam mm10 released inconsistent platforms ENCFF364MZK bam alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF589QAZ 1562288722 ENCODE Processing Pipeline 6d8dd397c1387af9bbccfd3ee557db6b https://www.encodeproject.org/files/ENCFF364MZK/@@download/ENCFF364MZK.bam mm10 released inconsistent platforms ENCFF183GET bam alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF341CBP 1387744180 ENCODE Processing Pipeline 7dd0fd23eb1402ae6fdf25a66087e9c0 https://www.encodeproject.org/files/ENCFF183GET/@@download/ENCFF183GET.bam mm10 released inconsistent platforms ENCFF451ITD bed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF364MZK, ENCFF580YCN 601527 ENCODE Processing Pipeline 48797688b8da8e4094ed0fd087e1811a https://www.encodeproject.org/files/ENCFF451ITD/@@download/ENCFF451ITD.bed.gz mm10 released inconsistent platforms ENCFF523TDN bed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF183GET, ENCFF580YCN 589588 ENCODE Processing Pipeline c3ffecb2589ceac271286a5fa14a0fe7 https://www.encodeproject.org/files/ENCFF523TDN/@@download/ENCFF523TDN.bed.gz mm10 released inconsistent platforms ENCFF647RSQ bed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF183GET, ENCFF364MZK, ENCFF580YCN 648007 ENCODE Processing Pipeline c1ad7cbdb18283c72ba03e46774375d5 https://www.encodeproject.org/files/ENCFF647RSQ/@@download/ENCFF647RSQ.bed.gz mm10 released inconsistent platforms ENCFF260DHL bigBed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF451ITD 1898504 ENCODE Processing Pipeline 53db2529ec62d523cdb1f8b36f6b8daa https://www.encodeproject.org/files/ENCFF260DHL/@@download/ENCFF260DHL.bigBed mm10 released inconsistent platforms ENCFF027AUB bigBed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF523TDN 1889346 ENCODE Processing Pipeline ac123d154022aa70e4d6004f633e0bed https://www.encodeproject.org/files/ENCFF027AUB/@@download/ENCFF027AUB.bigBed mm10 released inconsistent platforms ENCFF416JNT bigBed narrowPeak peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF647RSQ 1975994 ENCODE Processing Pipeline c2594dd9ddc8a0d8ff45d1df816c8edb https://www.encodeproject.org/files/ENCFF416JNT/@@download/ENCFF416JNT.bigBed mm10 released inconsistent platforms ENCFF441WBY bigWig signal p-value ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF364MZK, ENCFF580YCN 848284470 ENCODE Processing Pipeline eec4de5563177a5138e0ea8744692a5f https://www.encodeproject.org/files/ENCFF441WBY/@@download/ENCFF441WBY.bigWig mm10 released inconsistent platforms ENCFF418YNR bigWig signal p-value ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF183GET, ENCFF580YCN 751595945 ENCODE Processing Pipeline 5b7d3eb92451fda5f74310b9fe61a7e3 https://www.encodeproject.org/files/ENCFF418YNR/@@download/ENCFF418YNR.bigWig mm10 released inconsistent platforms ENCFF467HVZ bigWig signal p-value ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF183GET, ENCFF364MZK, ENCFF580YCN 1099341164 ENCODE Processing Pipeline 24ccaa1a08189565fe73ada209bea502 https://www.encodeproject.org/files/ENCFF467HVZ/@@download/ENCFF467HVZ.bigWig mm10 released inconsistent platforms ENCFF366DSL bigWig fold change over control ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF364MZK, ENCFF580YCN 871176090 ENCODE Processing Pipeline 92ca90af6fddc6afe0d98be753e21663 https://www.encodeproject.org/files/ENCFF366DSL/@@download/ENCFF366DSL.bigWig mm10 released inconsistent platforms ENCFF193ENP bigWig fold change over control ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF125FAE, ENCFF183GET, ENCFF580YCN 811848897 ENCODE Processing Pipeline 11503e5f7971e70c8944dd4ce5a3db24 https://www.encodeproject.org/files/ENCFF193ENP/@@download/ENCFF193ENP.bigWig mm10 released inconsistent platforms ENCFF180VGZ bigWig fold change over control ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125FAE, ENCFF183GET, ENCFF364MZK, ENCFF580YCN 1191345607 ENCODE Processing Pipeline eaa8bc97ccd5a7b03584393c6da44c35 https://www.encodeproject.org/files/ENCFF180VGZ/@@download/ENCFF180VGZ.bigWig mm10 released inconsistent platforms ENCFF878VPM bed narrowPeak replicated peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF451ITD, ENCFF523TDN, ENCFF647RSQ 682840 ENCODE Processing Pipeline 9f9cbaef351f566d5c2917324755fa8d https://www.encodeproject.org/files/ENCFF878VPM/@@download/ENCFF878VPM.bed.gz mm10 released inconsistent platforms ENCFF250WAZ bigBed narrowPeak replicated peaks ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF878VPM 1607589 ENCODE Processing Pipeline 7ed7d83b8dc5cda0de3d23b860524dc2 https://www.encodeproject.org/files/ENCFF250WAZ/@@download/ENCFF250WAZ.bigBed mm10 released inconsistent platforms ENCFF001HZF bigBed narrowPeak peaks ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUH 812469 Barbara Wold, Caltech 540a5b8a0bd68515b2619d1d81d92cc0 https://www.encodeproject.org/files/ENCFF001HZF/@@download/ENCFF001HZF.bigBed mm9 released insufficient read depth, control insufficient read depth ENCFF001HZG bigWig signal ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZH 102123787 Barbara Wold, Caltech 0eea2232398e48dde32f77fb5ff111b7 https://www.encodeproject.org/files/ENCFF001HZG/@@download/ENCFF001HZG.bigWig mm9 released insufficient read depth, control insufficient read depth ENCFF001HZH bam alignments ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IAB 859220877 Barbara Wold, Caltech 24ed0fdcad9e43fb178ca19ef6942e96 https://www.encodeproject.org/files/ENCFF001HZH/@@download/ENCFF001HZH.bam mm9 released insufficient read depth, control insufficient read depth ENCFF001IAB fastq reads ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 841081191 Barbara Wold, Caltech 590b1847bded5cc397f32c55ce56ba96 https://www.encodeproject.org/files/ENCFF001IAB/@@download/ENCFF001IAB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released insufficient read depth, control insufficient read depth ENCFF001XUH bed narrowPeak peaks ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZH 397603 Barbara Wold, Caltech 56ce9a843b83dac3464b19bc1db54328 https://www.encodeproject.org/files/ENCFF001XUH/@@download/ENCFF001XUH.bed.gz mm9 released insufficient read depth, control insufficient read depth ENCFF256YLB bam unfiltered alignments ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAB, ENCFF018NEO 902815305 ENCODE Processing Pipeline 7da3f3ffd97f083e14f07189b66c750d https://www.encodeproject.org/files/ENCFF256YLB/@@download/ENCFF256YLB.bam mm10 released insufficient read depth, control insufficient read depth ENCFF167HPL bam alignments ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAB, ENCFF018NEO 672025914 ENCODE Processing Pipeline 95eef1dec1b547f11c5e05d16c56700f https://www.encodeproject.org/files/ENCFF167HPL/@@download/ENCFF167HPL.bam mm10 released insufficient read depth, control insufficient read depth ENCFF046SMX bed narrowPeak peaks ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF167HPL, ENCFF993HAY 3089811 ENCODE Processing Pipeline 18b8789838d97a61a77b294db56e66ae https://www.encodeproject.org/files/ENCFF046SMX/@@download/ENCFF046SMX.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF551KGS bigWig signal p-value ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF167HPL, ENCFF993HAY 332673540 ENCODE Processing Pipeline 4eb1d2c8673d72fc5b1faea0927f845e https://www.encodeproject.org/files/ENCFF551KGS/@@download/ENCFF551KGS.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF388RKS bigWig fold change over control ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF167HPL, ENCFF993HAY 195516512 ENCODE Processing Pipeline 1cb68886c4a49c9fb90d57a781464719 https://www.encodeproject.org/files/ENCFF388RKS/@@download/ENCFF388RKS.bigWig mm10 released insufficient read depth, control insufficient read depth ENCFF697FPU bigBed narrowPeak peaks ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF046SMX 6994798 ENCODE Processing Pipeline aee3650b6ae4d90464787d2c6379bbc1 https://www.encodeproject.org/files/ENCFF697FPU/@@download/ENCFF697FPU.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF083VEU bigBed narrowPeak stable peaks ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF531VLE 3783485 ENCODE Processing Pipeline a904e2370a46bb52ce6ef9ceb41802cf https://www.encodeproject.org/files/ENCFF083VEU/@@download/ENCFF083VEU.bigBed mm10 released insufficient read depth, control insufficient read depth ENCFF531VLE bed narrowPeak stable peaks ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF046SMX 2056493 ENCODE Processing Pipeline 2720afda4023057120510fb0e1c41542 https://www.encodeproject.org/files/ENCFF531VLE/@@download/ENCFF531VLE.bed.gz mm10 released insufficient read depth, control insufficient read depth ENCFF001LHC bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LHO 510852989 Bing Ren, UCSD f475f988145b2f4cadd02da622a7040f https://www.encodeproject.org/files/ENCFF001LHC/@@download/ENCFF001LHC.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF001LHE bigBed broadPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001XZY 468088 Bing Ren, UCSD d0c5135c37165b66931387ff0d677fd1 https://www.encodeproject.org/files/ENCFF001LHE/@@download/ENCFF001LHE.bigBed mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF001LHG bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LHN 904441670 Bing Ren, UCSD 879c8c637c30b8d56cd504ff368e4df5 https://www.encodeproject.org/files/ENCFF001LHG/@@download/ENCFF001LHG.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF001LHH bigWig signal ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHC, ENCFF001LHG 84447489 Bing Ren, UCSD 71de0ca73c5707e7e2fa93f6e5fd1a7d https://www.encodeproject.org/files/ENCFF001LHH/@@download/ENCFF001LHH.bigWig mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF001LHN fastq reads ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 996724043 Bing Ren, UCSD 487aad5c59ead18bcd561780a245dc11 https://www.encodeproject.org/files/ENCFF001LHN/@@download/ENCFF001LHN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAK/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF001LHO fastq reads ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 908087695 Bing Ren, UCSD fc28d07269c86cceea6530810ac41489 https://www.encodeproject.org/files/ENCFF001LHO/@@download/ENCFF001LHO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF001XZY bed broadPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHC, ENCFF001LHG 328394 Bing Ren, UCSD 157af29dd3668983bfbbbe9234aaa3e8 https://www.encodeproject.org/files/ENCFF001XZY/@@download/ENCFF001XZY.bed.gz mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF194SKC bam unfiltered alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 1141653183 ENCODE Processing Pipeline 967d0825aee0e4d7a537a32340034e72 https://www.encodeproject.org/files/ENCFF194SKC/@@download/ENCFF194SKC.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF782HYA bam unfiltered alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 935745334 ENCODE Processing Pipeline 6de40ee6ad4e55ac21c7dd8ff450b656 https://www.encodeproject.org/files/ENCFF782HYA/@@download/ENCFF782HYA.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF667KDK bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 390827538 ENCODE Processing Pipeline 46a09226371fc8b456d154ca69e3ff3d https://www.encodeproject.org/files/ENCFF667KDK/@@download/ENCFF667KDK.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF661ZQB bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 662499534 ENCODE Processing Pipeline aef33f2133a7a32cc9c4534f001e2dd8 https://www.encodeproject.org/files/ENCFF661ZQB/@@download/ENCFF661ZQB.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF344JKN bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 285836481 ENCODE Processing Pipeline 1dbffd98174a928e9c880f93a92ae9a7 https://www.encodeproject.org/files/ENCFF344JKN/@@download/ENCFF344JKN.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF867MOQ bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 424924278 ENCODE Processing Pipeline dd95043693d6a3eb40a93b39e1df4883 https://www.encodeproject.org/files/ENCFF867MOQ/@@download/ENCFF867MOQ.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF049OXZ bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 317919905 ENCODE Processing Pipeline dfe2a89c98c819da616c10c0b80405b0 https://www.encodeproject.org/files/ENCFF049OXZ/@@download/ENCFF049OXZ.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF648MAL bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 152640249 ENCODE Processing Pipeline 1a980b9543fde0811ed4214a496e71f8 https://www.encodeproject.org/files/ENCFF648MAL/@@download/ENCFF648MAL.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF447NGZ bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 337515657 ENCODE Processing Pipeline 2c5e83a8c3f4a9210b63ed0917855b0a https://www.encodeproject.org/files/ENCFF447NGZ/@@download/ENCFF447NGZ.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF558UQC bed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 2912033 ENCODE Processing Pipeline 93896b0437578421d1af6130a2a7f990 https://www.encodeproject.org/files/ENCFF558UQC/@@download/ENCFF558UQC.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF773UWB bigBed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF197CSD 10628736 ENCODE Processing Pipeline a01976b13022ba2a83a2cbbae4f34e5e https://www.encodeproject.org/files/ENCFF773UWB/@@download/ENCFF773UWB.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF216CWE bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 384490107 ENCODE Processing Pipeline 0092316a041078ad5b085ede99162e33 https://www.encodeproject.org/files/ENCFF216CWE/@@download/ENCFF216CWE.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF197CSD bed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 4213983 ENCODE Processing Pipeline 3fcf24b2d81019ac33a68dd019ca1cb1 https://www.encodeproject.org/files/ENCFF197CSD/@@download/ENCFF197CSD.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF940XRJ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF863QLD 11280592 ENCODE Processing Pipeline 021cff9d5799129d654a5af2725da387 https://www.encodeproject.org/files/ENCFF940XRJ/@@download/ENCFF940XRJ.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF863QLD bed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 4761520 ENCODE Processing Pipeline 5ee4ca85e5152f30d510aee06070629a https://www.encodeproject.org/files/ENCFF863QLD/@@download/ENCFF863QLD.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF232GTB bed narrowPeak conservative idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF197CSD, ENCFF547MET, ENCFF558UQC, ENCFF863QLD 332525 ENCODE Processing Pipeline 0e3e73e5367d45fbd51427d5fe80dd0d https://www.encodeproject.org/files/ENCFF232GTB/@@download/ENCFF232GTB.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF357KNB bed narrowPeak optimal idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF197CSD, ENCFF547MET, ENCFF558UQC, ENCFF863QLD 529140 ENCODE Processing Pipeline 10b28a33ce515cb97751db98d2e24758 https://www.encodeproject.org/files/ENCFF357KNB/@@download/ENCFF357KNB.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF957NCK bigBed narrowPeak peaks and background as input for IDR ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF558UQC 6646285 ENCODE Processing Pipeline 6dc610a5ba5cceb6340c7d38b6f30ced https://www.encodeproject.org/files/ENCFF957NCK/@@download/ENCFF957NCK.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF404ARG bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF357KNB 976615 ENCODE Processing Pipeline 0b77b577794bef5f38649e09b0d4edd6 https://www.encodeproject.org/files/ENCFF404ARG/@@download/ENCFF404ARG.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF679AST bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF232GTB 693032 ENCODE Processing Pipeline cdc58be6d502ef89d89f3fdb30a9e649 https://www.encodeproject.org/files/ENCFF679AST/@@download/ENCFF679AST.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF002EUB fastq reads ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 924246528 Bing Ren, UCSD 287a31b36e4b4b0423a8d02e0e1272f5 SRA:SRR3651182 https://www.encodeproject.org/files/ENCFF002EUB/@@download/ENCFF002EUB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXM/ released low read length, control low read depth, low read depth ENCFF002EUC fastq reads ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1106924935 Bing Ren, UCSD d5ff7ab7444eac1c14d1102acbd9ed43 SRA:SRR3651183 https://www.encodeproject.org/files/ENCFF002EUC/@@download/ENCFF002EUC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXL/ released low read length, control low read depth, low read depth ENCFF822VZV bam alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUB, ENCFF806TVZ 825179342 ENCODE Processing Pipeline 72f233d5d71758c61e9983f22421fcc7 https://www.encodeproject.org/files/ENCFF822VZV/@@download/ENCFF822VZV.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF337NUV bam alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUC, ENCFF806TVZ 964476082 ENCODE Processing Pipeline 18e3eb63b75b1138b0488a0026958f87 https://www.encodeproject.org/files/ENCFF337NUV/@@download/ENCFF337NUV.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF291NNN bigBed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF364MRF 2450869 ENCODE Processing Pipeline 3d485f2779db1096fe3c0f1523063e4e https://www.encodeproject.org/files/ENCFF291NNN/@@download/ENCFF291NNN.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF118ZIW bed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF337NUV, ENCFF395ALO, ENCFF956BKJ 870779 ENCODE Processing Pipeline 0d77be3d15a7161330f777456b06d8a3 https://www.encodeproject.org/files/ENCFF118ZIW/@@download/ENCFF118ZIW.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF790MEA bigBed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF118ZIW 2779049 ENCODE Processing Pipeline 523b91e8862634561974bfa7ab4a1446 https://www.encodeproject.org/files/ENCFF790MEA/@@download/ENCFF790MEA.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF364MRF bed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF337NUV, ENCFF395ALO, ENCFF822VZV, ENCFF956BKJ 771059 ENCODE Processing Pipeline 23dca6a18668d4f322bfd1939da3d8b5 https://www.encodeproject.org/files/ENCFF364MRF/@@download/ENCFF364MRF.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF164HRI bigBed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF344SVE 3317144 ENCODE Processing Pipeline 5563de684e5f3797e6c34744bcce7c8a https://www.encodeproject.org/files/ENCFF164HRI/@@download/ENCFF164HRI.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF737KGK bigWig signal p-value ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF337NUV, ENCFF395ALO, ENCFF956BKJ 372029650 ENCODE Processing Pipeline ecbaea8b5173069873a63334e42f257e https://www.encodeproject.org/files/ENCFF737KGK/@@download/ENCFF737KGK.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF344SVE bed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF822VZV, ENCFF956BKJ 1055263 ENCODE Processing Pipeline 9fd72aa9c00feb95ff43c4c584b4c1b2 https://www.encodeproject.org/files/ENCFF344SVE/@@download/ENCFF344SVE.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF085UXD bigWig signal p-value ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF822VZV, ENCFF956BKJ 426384146 ENCODE Processing Pipeline cac45926c7ea470f03f5dac9a6fa5650 https://www.encodeproject.org/files/ENCFF085UXD/@@download/ENCFF085UXD.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF967UQO bigWig signal p-value ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF337NUV, ENCFF395ALO, ENCFF822VZV, ENCFF956BKJ 517759512 ENCODE Processing Pipeline c49fd05f0bf83bb7d81a547bfa6c32df https://www.encodeproject.org/files/ENCFF967UQO/@@download/ENCFF967UQO.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF714DQW bigWig fold change over control ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF822VZV, ENCFF956BKJ 366271223 ENCODE Processing Pipeline be361b70f475b5959c89acba32ac8d0b https://www.encodeproject.org/files/ENCFF714DQW/@@download/ENCFF714DQW.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF011QKO bigWig fold change over control ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF337NUV, ENCFF395ALO, ENCFF956BKJ 421205796 ENCODE Processing Pipeline 0837c5e013c7cd890c1044341eb679de https://www.encodeproject.org/files/ENCFF011QKO/@@download/ENCFF011QKO.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF031BOY bigWig fold change over control ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF337NUV, ENCFF395ALO, ENCFF822VZV, ENCFF956BKJ 627040337 ENCODE Processing Pipeline e4982318ffb602b72b4be0688d313ec3 https://www.encodeproject.org/files/ENCFF031BOY/@@download/ENCFF031BOY.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF433FZT bed narrowPeak replicated peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF118ZIW, ENCFF344SVE, ENCFF364MRF 898942 ENCODE Processing Pipeline 67bef20d90a8a32ebf917231e6775fb2 https://www.encodeproject.org/files/ENCFF433FZT/@@download/ENCFF433FZT.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF484QNW bigBed narrowPeak replicated peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF433FZT 2138544 ENCODE Processing Pipeline 6d17de90657f90e06750c74ca0a4c86b https://www.encodeproject.org/files/ENCFF484QNW/@@download/ENCFF484QNW.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF901VPY bam unfiltered alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUC, ENCFF018NEO 1402522499 ENCODE Processing Pipeline 42dc46d10db00a8e1e6ab729802c9cb6 https://www.encodeproject.org/files/ENCFF901VPY/@@download/ENCFF901VPY.bam mm10 released low read length, control low read depth, low read depth ENCFF365DAW bam alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUB, ENCFF018NEO 825050206 ENCODE Processing Pipeline ae03b83f8e3d9292b9d81333dba9772f https://www.encodeproject.org/files/ENCFF365DAW/@@download/ENCFF365DAW.bam mm10 released low read length, control low read depth, low read depth ENCFF061GBN bam unfiltered alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUB, ENCFF018NEO 1167782308 ENCODE Processing Pipeline b879058bb241ad05e9a24e7c3795e40c https://www.encodeproject.org/files/ENCFF061GBN/@@download/ENCFF061GBN.bam mm10 released low read length, control low read depth, low read depth ENCFF988CHY bam alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUC, ENCFF018NEO 964292646 ENCODE Processing Pipeline 5440a84974f0ba3e049603323e6c0b8e https://www.encodeproject.org/files/ENCFF988CHY/@@download/ENCFF988CHY.bam mm10 released low read length, control low read depth, low read depth ENCFF904ZAP bed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF365DAW, ENCFF488PXJ 698632 ENCODE Processing Pipeline 9b1611173cd9ff30d6ad2e78335023c7 https://www.encodeproject.org/files/ENCFF904ZAP/@@download/ENCFF904ZAP.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF043VZI bed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF365DAW, ENCFF488PXJ, ENCFF988CHY 771449 ENCODE Processing Pipeline 9ece849da9783cac984ee213789dc145 https://www.encodeproject.org/files/ENCFF043VZI/@@download/ENCFF043VZI.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF871NIG bigBed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF904ZAP 2287034 ENCODE Processing Pipeline f29e88724757cdda9d999cc650079c4f https://www.encodeproject.org/files/ENCFF871NIG/@@download/ENCFF871NIG.bigBed mm10 released low read length, control low read depth, low read depth ENCFF181DZR bed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF988CHY 870792 ENCODE Processing Pipeline 2f66fa5538755988733083ce046bb8fb https://www.encodeproject.org/files/ENCFF181DZR/@@download/ENCFF181DZR.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF706SIJ bigBed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF181DZR 2778645 ENCODE Processing Pipeline 8ca3048c7c317f7930cebb4f3218b93a https://www.encodeproject.org/files/ENCFF706SIJ/@@download/ENCFF706SIJ.bigBed mm10 released low read length, control low read depth, low read depth ENCFF830KCG bigBed narrowPeak peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF043VZI 2450739 ENCODE Processing Pipeline 1ff3c1d6f34150cfed4f9d33be03e453 https://www.encodeproject.org/files/ENCFF830KCG/@@download/ENCFF830KCG.bigBed mm10 released low read length, control low read depth, low read depth ENCFF501DPD bigWig signal p-value ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF988CHY 360140677 ENCODE Processing Pipeline cf15b9e4a1e5a419897b727965634171 https://www.encodeproject.org/files/ENCFF501DPD/@@download/ENCFF501DPD.bigWig mm10 released low read length, control low read depth, low read depth ENCFF843CBH bigWig signal p-value ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF365DAW, ENCFF488PXJ 284092517 ENCODE Processing Pipeline 4e925e034e3fba0cbc45186d4510a06c https://www.encodeproject.org/files/ENCFF843CBH/@@download/ENCFF843CBH.bigWig mm10 released low read length, control low read depth, low read depth ENCFF080XCO bigWig signal p-value ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF365DAW, ENCFF488PXJ, ENCFF988CHY 517801982 ENCODE Processing Pipeline 4c339db888f3ae7587ea61e3459471a6 https://www.encodeproject.org/files/ENCFF080XCO/@@download/ENCFF080XCO.bigWig mm10 released low read length, control low read depth, low read depth ENCFF070IPT bigWig fold change over control ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF988CHY 420692467 ENCODE Processing Pipeline b66069e2b86865ebeb7d1d8852bbc8d4 https://www.encodeproject.org/files/ENCFF070IPT/@@download/ENCFF070IPT.bigWig mm10 released low read length, control low read depth, low read depth ENCFF409ESR bigWig fold change over control ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF365DAW, ENCFF488PXJ 293836617 ENCODE Processing Pipeline a5c8a48b8982f3f475ef1a01af2c81ec https://www.encodeproject.org/files/ENCFF409ESR/@@download/ENCFF409ESR.bigWig mm10 released low read length, control low read depth, low read depth ENCFF212XYE bigWig fold change over control ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF365DAW, ENCFF488PXJ, ENCFF988CHY 628702827 ENCODE Processing Pipeline d8fd4472cd9e7539d33126b4850e3a1e https://www.encodeproject.org/files/ENCFF212XYE/@@download/ENCFF212XYE.bigWig mm10 released low read length, control low read depth, low read depth ENCFF109FJW bed narrowPeak replicated peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF043VZI, ENCFF181DZR, ENCFF904ZAP 863764 ENCODE Processing Pipeline b05ca82d3c9b7775daafdca9802cc892 https://www.encodeproject.org/files/ENCFF109FJW/@@download/ENCFF109FJW.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF603JDB bigBed narrowPeak replicated peaks ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF109FJW 2065731 ENCODE Processing Pipeline c2d58ed624d12da9b20ae58e3c43858e https://www.encodeproject.org/files/ENCFF603JDB/@@download/ENCFF603JDB.bigBed mm10 released low read length, control low read depth, low read depth ENCFF050BAT fastq reads ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1369895623 Bing Ren, UCSD 50c4b2419fc5926a47bd1325d3327a1c SRA:SRR3652911 https://www.encodeproject.org/files/ENCFF050BAT/@@download/ENCFF050BAT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF915VAQ fastq reads ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1103763256 Bing Ren, UCSD 41c063a8b92321a8b046d7b971f7a8fc SRA:SRR3652912 https://www.encodeproject.org/files/ENCFF915VAQ/@@download/ENCFF915VAQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF536OKC bam alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF050BAT, ENCFF806TVZ 1187006302 ENCODE Processing Pipeline 416f8439bb3bad199935d98c93270b89 https://www.encodeproject.org/files/ENCFF536OKC/@@download/ENCFF536OKC.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF952ZQR bam alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF806TVZ, ENCFF915VAQ 675860852 ENCODE Processing Pipeline af43cd63b79fbb10b44e519b97e52a82 https://www.encodeproject.org/files/ENCFF952ZQR/@@download/ENCFF952ZQR.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF242XBB bed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF536OKC, ENCFF562EMV, ENCFF623BMA, ENCFF952ZQR 890018 ENCODE Processing Pipeline 2f7d5db761a231b3c1e7ba2211fbdf32 https://www.encodeproject.org/files/ENCFF242XBB/@@download/ENCFF242XBB.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF574KJP bed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF952ZQR 1384164 ENCODE Processing Pipeline 7f2d3170b98abe7d44ff72cfdd525a7e https://www.encodeproject.org/files/ENCFF574KJP/@@download/ENCFF574KJP.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF025YRL bigBed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF801HAR 2985490 ENCODE Processing Pipeline de6ae726e4a0b1903339c748fdd45a36 https://www.encodeproject.org/files/ENCFF025YRL/@@download/ENCFF025YRL.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF235TBK bigBed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF574KJP 3388850 ENCODE Processing Pipeline 7c103acf178a0d7fd62770ff41588145 https://www.encodeproject.org/files/ENCFF235TBK/@@download/ENCFF235TBK.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF801HAR bed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF536OKC, ENCFF562EMV, ENCFF623BMA 951212 ENCODE Processing Pipeline c09a5663444f36a4edada1cb34698e07 https://www.encodeproject.org/files/ENCFF801HAR/@@download/ENCFF801HAR.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF664VLM bigBed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF242XBB 2776241 ENCODE Processing Pipeline e0aeb80a12671967377f0d1dc350869f https://www.encodeproject.org/files/ENCFF664VLM/@@download/ENCFF664VLM.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF908DJT bigWig signal p-value ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF536OKC, ENCFF562EMV, ENCFF623BMA 479200388 ENCODE Processing Pipeline 411c7d8d6576871534ae9d48996d51fc https://www.encodeproject.org/files/ENCFF908DJT/@@download/ENCFF908DJT.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF980JSA bigWig signal p-value ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF952ZQR 345779706 ENCODE Processing Pipeline 93f2ec1c55f691d028aeddae9cff2f72 https://www.encodeproject.org/files/ENCFF980JSA/@@download/ENCFF980JSA.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF009PLP bigWig signal p-value ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF536OKC, ENCFF562EMV, ENCFF623BMA, ENCFF952ZQR 467857714 ENCODE Processing Pipeline b802af4342e4b83fca8dd5d509c483bf https://www.encodeproject.org/files/ENCFF009PLP/@@download/ENCFF009PLP.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF126AYO bigWig fold change over control ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF536OKC, ENCFF562EMV, ENCFF623BMA 473658795 ENCODE Processing Pipeline ccb24983dd0bfe085f31734f1221f52b https://www.encodeproject.org/files/ENCFF126AYO/@@download/ENCFF126AYO.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF869WNR bigWig fold change over control ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF952ZQR 338030163 ENCODE Processing Pipeline 70a7f8d9749d5b56a378781fda5d5cda https://www.encodeproject.org/files/ENCFF869WNR/@@download/ENCFF869WNR.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF899EKW bed narrowPeak replicated peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF242XBB, ENCFF574KJP, ENCFF801HAR 1010583 ENCODE Processing Pipeline 7daa24eeeab52b9eccd6db8745850374 https://www.encodeproject.org/files/ENCFF899EKW/@@download/ENCFF899EKW.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF168YDQ bigBed narrowPeak replicated peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF899EKW 2371428 ENCODE Processing Pipeline 1cd64e57b3567986a635e586947eba49 https://www.encodeproject.org/files/ENCFF168YDQ/@@download/ENCFF168YDQ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF076BJX bigWig fold change over control ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF536OKC, ENCFF562EMV, ENCFF623BMA, ENCFF952ZQR 649809855 ENCODE Processing Pipeline 8e34eb94f6d5475529d7d0a447c5dcc2 https://www.encodeproject.org/files/ENCFF076BJX/@@download/ENCFF076BJX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF738JWJ bam unfiltered alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF915VAQ 1318040926 ENCODE Processing Pipeline 48c853f73ba73787ad56664a57819648 https://www.encodeproject.org/files/ENCFF738JWJ/@@download/ENCFF738JWJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF867FMD bam alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF915VAQ 675752451 ENCODE Processing Pipeline d8014cffaedaa0836ac4db9cf328a4d8 https://www.encodeproject.org/files/ENCFF867FMD/@@download/ENCFF867FMD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF471DIR bam unfiltered alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF050BAT 1716283206 ENCODE Processing Pipeline 930b9af02232ba87561578ddffed2e7f https://www.encodeproject.org/files/ENCFF471DIR/@@download/ENCFF471DIR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF787CJO bam alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF050BAT 1186785083 ENCODE Processing Pipeline e8a2c9d65942af4a48caa10bead50c2b https://www.encodeproject.org/files/ENCFF787CJO/@@download/ENCFF787CJO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF529KVX bed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF787CJO, ENCFF903NWQ, ENCFF995XOU 972549 ENCODE Processing Pipeline 84c85a5fe39c05f679e74506140c836e https://www.encodeproject.org/files/ENCFF529KVX/@@download/ENCFF529KVX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF765PBB bed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF867FMD, ENCFF903NWQ 675950 ENCODE Processing Pipeline c33b1ceb1cceba14948353ea3028c34c https://www.encodeproject.org/files/ENCFF765PBB/@@download/ENCFF765PBB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF720SYI bed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF787CJO, ENCFF867FMD, ENCFF903NWQ, ENCFF995XOU 872068 ENCODE Processing Pipeline 935f687b3dd381fa9db6e501111ffcd7 https://www.encodeproject.org/files/ENCFF720SYI/@@download/ENCFF720SYI.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF048SLX bigBed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF529KVX 3036625 ENCODE Processing Pipeline a6f389c67c8708145cfeaf5fbbd35800 https://www.encodeproject.org/files/ENCFF048SLX/@@download/ENCFF048SLX.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF653FQV bigBed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF765PBB 2203230 ENCODE Processing Pipeline 31e99edeb7dec8958d8a1bb3befd092f https://www.encodeproject.org/files/ENCFF653FQV/@@download/ENCFF653FQV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF390FJZ bigBed narrowPeak peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF720SYI 2724959 ENCODE Processing Pipeline 7517e5ddb2dfd215c4c216deb6366519 https://www.encodeproject.org/files/ENCFF390FJZ/@@download/ENCFF390FJZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF938UHS bigWig signal p-value ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF787CJO, ENCFF903NWQ, ENCFF995XOU 473662528 ENCODE Processing Pipeline a7dd73eed9008a1001766f1cc4cf3ac5 https://www.encodeproject.org/files/ENCFF938UHS/@@download/ENCFF938UHS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF413VTL bigWig signal p-value ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF867FMD, ENCFF903NWQ 249972500 ENCODE Processing Pipeline b57c7e981d33cf322c21d1b112ea4a07 https://www.encodeproject.org/files/ENCFF413VTL/@@download/ENCFF413VTL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF015WDF bigWig signal p-value ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF787CJO, ENCFF867FMD, ENCFF903NWQ, ENCFF995XOU 472461668 ENCODE Processing Pipeline f454b202ce9f0c55874c0d4f8c9ec58e https://www.encodeproject.org/files/ENCFF015WDF/@@download/ENCFF015WDF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF406CSD bigWig fold change over control ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF787CJO, ENCFF903NWQ, ENCFF995XOU 468698057 ENCODE Processing Pipeline 88316880604f14d052f415dfdf149de1 https://www.encodeproject.org/files/ENCFF406CSD/@@download/ENCFF406CSD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF108XWA bigWig fold change over control ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF867FMD, ENCFF903NWQ 276238748 ENCODE Processing Pipeline 309b936dcbfd0dafcaad240c375d7660 https://www.encodeproject.org/files/ENCFF108XWA/@@download/ENCFF108XWA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF810BQP bigWig fold change over control ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF787CJO, ENCFF867FMD, ENCFF903NWQ, ENCFF995XOU 653233469 ENCODE Processing Pipeline 06e2f72852b2753cad33efaa8f9f566a https://www.encodeproject.org/files/ENCFF810BQP/@@download/ENCFF810BQP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF777TKP bed narrowPeak replicated peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF529KVX, ENCFF720SYI, ENCFF765PBB 949917 ENCODE Processing Pipeline 45689fdaaf43b3871c0a091285c0dfa4 https://www.encodeproject.org/files/ENCFF777TKP/@@download/ENCFF777TKP.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF903ETK bigBed narrowPeak replicated peaks ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF777TKP 2249960 ENCODE Processing Pipeline 0a998719824fc7d8ce66da2d7428c056 https://www.encodeproject.org/files/ENCFF903ETK/@@download/ENCFF903ETK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001MXE bam alignments ENCSR000ADH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001MYM 539779283 Sherman Weissman, Yale 0e030c2a38ce317817a6067cea669923 https://www.encodeproject.org/files/ENCFF001MXE/@@download/ENCFF001MXE.bam mm9 released low read length ENCFF001MXG bigWig signal ENCSR000ADH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 203006412 Sherman Weissman, Yale a603df9010bde0e6faa37806efa9daf0 https://www.encodeproject.org/files/ENCFF001MXG/@@download/ENCFF001MXG.bigWig mm9 released low read length missing derived_from ENCFF001MYM fastq reads ENCSR000ADH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 1822959682 Sherman Weissman, Yale f7acb742cf7e0637878651b2b949aad1 https://www.encodeproject.org/files/ENCFF001MYM/@@download/ENCFF001MYM.fastq.gz Illumina Genome Analyzer II released low read length ENCFF672FWR bam unfiltered alignments ENCSR000ADH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001MYM, ENCFF018NEO 2102247367 ENCODE Processing Pipeline 2592a81c273063e394a68a4bacd5fd7c https://www.encodeproject.org/files/ENCFF672FWR/@@download/ENCFF672FWR.bam mm10 released low read length ENCFF784ZAX bam alignments ENCSR000ADH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001MYM, ENCFF018NEO 1133923475 ENCODE Processing Pipeline edef23b1dafc78af7f2444378ef46806 https://www.encodeproject.org/files/ENCFF784ZAX/@@download/ENCFF784ZAX.bam mm10 released low read length ENCFF002BVI fastq reads ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 36 single-ended 660416542 Bing Ren, UCSD 16242d1555533ff5a8f73d3d1c0d7c42 SRA:SRR3652126 https://www.encodeproject.org/files/ENCFF002BVI/@@download/ENCFF002BVI.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVM fastq reads ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 36 single-ended 608232692 Bing Ren, UCSD 3c96570a6e9554d768a3b3c92e5cf39b SRA:SRR3652123 https://www.encodeproject.org/files/ENCFF002BVM/@@download/ENCFF002BVM.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVL fastq reads ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 649961202 Bing Ren, UCSD b5022cdce2ac6f81a740778c5e03fd30 SRA:SRR3652124 https://www.encodeproject.org/files/ENCFF002BVL/@@download/ENCFF002BVL.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVK fastq reads ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 671363273 Bing Ren, UCSD 909805f1e7621c19f0ca71e555530615 SRA:SRR3652127 https://www.encodeproject.org/files/ENCFF002BVK/@@download/ENCFF002BVK.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF850QNW fastq reads ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 3 50 single-ended 430910214 Bing Ren, UCSD cb5e7095d594a06022d003b0e7bcb7f5 SRA:SRR3652125 https://www.encodeproject.org/files/ENCFF850QNW/@@download/ENCFF850QNW.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF887LKO fastq reads ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 3 50 single-ended 1101694432 Bing Ren, UCSD 37c968663f75bc5f323d43c0a462b19a SRA:SRR3652128 https://www.encodeproject.org/files/ENCFF887LKO/@@download/ENCFF887LKO.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF959EUX bam alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BVI, ENCFF002BVK, ENCFF806TVZ, ENCFF887LKO 1241648022 ENCODE Processing Pipeline cea4f48649a64ae82a87f181c7d3aa56 https://www.encodeproject.org/files/ENCFF959EUX/@@download/ENCFF959EUX.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF167GLJ bam alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BVL, ENCFF002BVM, ENCFF806TVZ, ENCFF850QNW 1284421073 ENCODE Processing Pipeline 0e8f308171aad6d9b1713811635f6a22 https://www.encodeproject.org/files/ENCFF167GLJ/@@download/ENCFF167GLJ.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF028KFP bed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF959EUX 2051117 ENCODE Processing Pipeline feb5dda6681586eeb8a4011ba315bd7b https://www.encodeproject.org/files/ENCFF028KFP/@@download/ENCFF028KFP.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF763UGP bed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF167GLJ, ENCFF657TOI 1515123 ENCODE Processing Pipeline 7b534d206c11aea4b38639899dbc4680 https://www.encodeproject.org/files/ENCFF763UGP/@@download/ENCFF763UGP.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF648AES bed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF167GLJ, ENCFF657TOI, ENCFF959EUX 1212040 ENCODE Processing Pipeline 9e1aff54ee5710a63872a49d13f86351 https://www.encodeproject.org/files/ENCFF648AES/@@download/ENCFF648AES.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF772QAQ bigBed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF028KFP 4211021 ENCODE Processing Pipeline 502de4806503248653e96ad816d0a940 https://www.encodeproject.org/files/ENCFF772QAQ/@@download/ENCFF772QAQ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF310OZR bigBed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF648AES 2338325 ENCODE Processing Pipeline 8f488bfe539eeee77a0af6c604596a39 https://www.encodeproject.org/files/ENCFF310OZR/@@download/ENCFF310OZR.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF341RIG bigWig signal p-value ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF959EUX 403427717 ENCODE Processing Pipeline 641b23dc157f6a29cd4da109aea329c2 https://www.encodeproject.org/files/ENCFF341RIG/@@download/ENCFF341RIG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF143HQR bigBed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF763UGP 2973849 ENCODE Processing Pipeline 291c20aaf3209dee403c415a8062a4fe https://www.encodeproject.org/files/ENCFF143HQR/@@download/ENCFF143HQR.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF514AII bigWig signal p-value ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF167GLJ, ENCFF657TOI 458405527 ENCODE Processing Pipeline 06804c05a9036412b24ffbd4f2a50746 https://www.encodeproject.org/files/ENCFF514AII/@@download/ENCFF514AII.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF831IMT bigWig fold change over control ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF959EUX 445469284 ENCODE Processing Pipeline 8d943619dafff84c1484ce64e8d29569 https://www.encodeproject.org/files/ENCFF831IMT/@@download/ENCFF831IMT.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF873OYV bigWig signal p-value ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF167GLJ, ENCFF657TOI, ENCFF959EUX 495223991 ENCODE Processing Pipeline 2a70df1f0b49eb8612720fa36f16b4af https://www.encodeproject.org/files/ENCFF873OYV/@@download/ENCFF873OYV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF243VUH bigWig fold change over control ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF167GLJ, ENCFF657TOI, ENCFF959EUX 743722176 ENCODE Processing Pipeline 7c3936f259d3570a3dba8ad17915a895 https://www.encodeproject.org/files/ENCFF243VUH/@@download/ENCFF243VUH.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF406JBI bigWig fold change over control ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF167GLJ, ENCFF657TOI 470679729 ENCODE Processing Pipeline 066bfbf47f84dc398774b04c1408503a https://www.encodeproject.org/files/ENCFF406JBI/@@download/ENCFF406JBI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF989ERE bed narrowPeak replicated peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF028KFP, ENCFF648AES, ENCFF763UGP 1121854 ENCODE Processing Pipeline 29eefbdfaab5c4212f3ca4c680800c64 https://www.encodeproject.org/files/ENCFF989ERE/@@download/ENCFF989ERE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF172GOD bigBed narrowPeak replicated peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF989ERE 1963880 ENCODE Processing Pipeline a23cd818061429b90943a2fecd8479ca https://www.encodeproject.org/files/ENCFF172GOD/@@download/ENCFF172GOD.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF685GLE bam unfiltered alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVL, ENCFF002BVM, ENCFF018NEO, ENCFF850QNW 2035936440 ENCODE Processing Pipeline 01dafecde614364d132e615c3c8c6d19 https://www.encodeproject.org/files/ENCFF685GLE/@@download/ENCFF685GLE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF356TLZ bam unfiltered alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVI, ENCFF002BVK, ENCFF018NEO, ENCFF887LKO 2650532272 ENCODE Processing Pipeline fd9afcd2963bad6b54d6cdfc4b3801ba https://www.encodeproject.org/files/ENCFF356TLZ/@@download/ENCFF356TLZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF073CPJ bam alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVL, ENCFF002BVM, ENCFF018NEO, ENCFF850QNW 1182922240 ENCODE Processing Pipeline 3f8f4d9661792a961105f198923fc178 https://www.encodeproject.org/files/ENCFF073CPJ/@@download/ENCFF073CPJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF362ZXG bam alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVI, ENCFF002BVK, ENCFF018NEO, ENCFF887LKO 1063344647 ENCODE Processing Pipeline ad5ca69024e8ba239c20e6e2e470fe74 https://www.encodeproject.org/files/ENCFF362ZXG/@@download/ENCFF362ZXG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF152QPX bed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF362ZXG, ENCFF735XMC 1950087 ENCODE Processing Pipeline 1bbbd2260c9fd52b3415526d5813d1ec https://www.encodeproject.org/files/ENCFF152QPX/@@download/ENCFF152QPX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF724WCK bed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF073CPJ, ENCFF130PCO, ENCFF735XMC 1483019 ENCODE Processing Pipeline 6bb8a95502cc575d257b77e261865af6 https://www.encodeproject.org/files/ENCFF724WCK/@@download/ENCFF724WCK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF231WKN bed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073CPJ, ENCFF130PCO, ENCFF362ZXG, ENCFF735XMC 1148770 ENCODE Processing Pipeline e132b1b65bbef032d4807015145b2929 https://www.encodeproject.org/files/ENCFF231WKN/@@download/ENCFF231WKN.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF609ZSD bigBed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF152QPX 4037689 ENCODE Processing Pipeline e2c453d5b78cc00ac708077d1d9ff5e8 https://www.encodeproject.org/files/ENCFF609ZSD/@@download/ENCFF609ZSD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830PKT bigBed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF724WCK 2920675 ENCODE Processing Pipeline 4e35d8e3013a6f990ee05b2d227f718c https://www.encodeproject.org/files/ENCFF830PKT/@@download/ENCFF830PKT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF889GIE bigBed narrowPeak peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF231WKN 2250912 ENCODE Processing Pipeline d1167463202eeb777f62b852082eb74f https://www.encodeproject.org/files/ENCFF889GIE/@@download/ENCFF889GIE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF735CVU bigWig signal p-value ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF362ZXG, ENCFF735XMC 441327476 ENCODE Processing Pipeline fbca5aabbc5dbbc70e7fc8abc62ed0ff https://www.encodeproject.org/files/ENCFF735CVU/@@download/ENCFF735CVU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF100CPZ bigWig signal p-value ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF073CPJ, ENCFF130PCO, ENCFF735XMC 414872368 ENCODE Processing Pipeline ca2e434c7d01ff87ebe92f6d461b7c5a https://www.encodeproject.org/files/ENCFF100CPZ/@@download/ENCFF100CPZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF685DJU bigWig signal p-value ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073CPJ, ENCFF130PCO, ENCFF362ZXG, ENCFF735XMC 487281292 ENCODE Processing Pipeline 3a9b337a46f9d614df4065af08eb4598 https://www.encodeproject.org/files/ENCFF685DJU/@@download/ENCFF685DJU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF893GNI bigWig fold change over control ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF362ZXG, ENCFF735XMC 436583346 ENCODE Processing Pipeline 6b5f3a2929ad86a20b0cdbddf5bd8741 https://www.encodeproject.org/files/ENCFF893GNI/@@download/ENCFF893GNI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF817KDL bigWig fold change over control ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF073CPJ, ENCFF130PCO, ENCFF735XMC 468312901 ENCODE Processing Pipeline 5ac80f7f9299acea1d052bf238f6a13d https://www.encodeproject.org/files/ENCFF817KDL/@@download/ENCFF817KDL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF362GRX bigWig fold change over control ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF073CPJ, ENCFF130PCO, ENCFF362ZXG, ENCFF735XMC 731587640 ENCODE Processing Pipeline 98a073001ac8dad5a64b09327543f5bd https://www.encodeproject.org/files/ENCFF362GRX/@@download/ENCFF362GRX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF567RNX bed narrowPeak replicated peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF152QPX, ENCFF231WKN, ENCFF724WCK 1052690 ENCODE Processing Pipeline b22b567de1094488b9ad35915f95ac8a https://www.encodeproject.org/files/ENCFF567RNX/@@download/ENCFF567RNX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF489BOA bigBed narrowPeak replicated peaks ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF567RNX 1869547 ENCODE Processing Pipeline af6fd964d26641862923e8170b879788 https://www.encodeproject.org/files/ENCFF489BOA/@@download/ENCFF489BOA.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AMK fastq reads ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1377209128 Bing Ren, UCSD 87b5a8c7eef80456b3b603b0ddbe6bf6 SRA:SRR3651535 https://www.encodeproject.org/files/ENCFF002AMK/@@download/ENCFF002AMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APW/ released low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AMQ fastq reads ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1571764917 Bing Ren, UCSD a93ac15f9717002d2e9f8618cb471c56 SRA:SRR3651534 https://www.encodeproject.org/files/ENCFF002AMQ/@@download/ENCFF002AMQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF144LQR bam alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMQ, ENCFF806TVZ 910702956 ENCODE Processing Pipeline c62afb0c0784a1995461b018568df275 https://www.encodeproject.org/files/ENCFF144LQR/@@download/ENCFF144LQR.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF484FBY bam alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMK, ENCFF806TVZ 826555248 ENCODE Processing Pipeline b45905dbba0aa92dae9cce673263be40 https://www.encodeproject.org/files/ENCFF484FBY/@@download/ENCFF484FBY.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF761WGW bed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF484FBY, ENCFF716BBX 520338 ENCODE Processing Pipeline cb6ea7595cdb2e8d3f3dd2fe89100f72 https://www.encodeproject.org/files/ENCFF761WGW/@@download/ENCFF761WGW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF766VHW bigBed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF761WGW 1676682 ENCODE Processing Pipeline 0c2b472264363f265f86cbabe2c54021 https://www.encodeproject.org/files/ENCFF766VHW/@@download/ENCFF766VHW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF510ZGF bigBed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF141FEH 1659499 ENCODE Processing Pipeline de0c982831dd95bbfb92e08d3fa97fc4 https://www.encodeproject.org/files/ENCFF510ZGF/@@download/ENCFF510ZGF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF141FEH bed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF144LQR, ENCFF417WKH 521456 ENCODE Processing Pipeline a7fc0410b51406e998cd6ee563fa4c63 https://www.encodeproject.org/files/ENCFF141FEH/@@download/ENCFF141FEH.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF131VAZ bed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144LQR, ENCFF417WKH, ENCFF484FBY, ENCFF716BBX 588146 ENCODE Processing Pipeline 0ca66cac3773b8f49d20b43b600a17f7 https://www.encodeproject.org/files/ENCFF131VAZ/@@download/ENCFF131VAZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF837ZAD bigBed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF131VAZ 1744281 ENCODE Processing Pipeline 80bad48aa406b1a15e51f53d496c915c https://www.encodeproject.org/files/ENCFF837ZAD/@@download/ENCFF837ZAD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF657OAH bigWig signal p-value ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF484FBY, ENCFF716BBX 398738780 ENCODE Processing Pipeline 39a42ae07d2c9b39bf2c8f447fe78e93 https://www.encodeproject.org/files/ENCFF657OAH/@@download/ENCFF657OAH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF807VBP bigWig signal p-value ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF144LQR, ENCFF417WKH 393971959 ENCODE Processing Pipeline 1e5fc729dac1bc11d21e74cfccf2b5d0 https://www.encodeproject.org/files/ENCFF807VBP/@@download/ENCFF807VBP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF737MTB bigWig signal p-value ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144LQR, ENCFF417WKH, ENCFF484FBY, ENCFF716BBX 741739719 ENCODE Processing Pipeline 8966d27557d20ec1f3b87eb9ac48e54c https://www.encodeproject.org/files/ENCFF737MTB/@@download/ENCFF737MTB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF122ANK bigWig fold change over control ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF484FBY, ENCFF716BBX 329900441 ENCODE Processing Pipeline 4d8b9cb2f956b7c00dac153cb268f9b4 https://www.encodeproject.org/files/ENCFF122ANK/@@download/ENCFF122ANK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF744VPE bigWig fold change over control ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF144LQR, ENCFF417WKH 344289686 ENCODE Processing Pipeline ae929181dfb96da8a311e8558c5e1dac https://www.encodeproject.org/files/ENCFF744VPE/@@download/ENCFF744VPE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF721TVA bed narrowPeak replicated peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF131VAZ, ENCFF141FEH, ENCFF761WGW 644604 ENCODE Processing Pipeline 9aa3035fa5677d2bcd9d2f89ac3e5d33 https://www.encodeproject.org/files/ENCFF721TVA/@@download/ENCFF721TVA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF311MIP bigWig fold change over control ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144LQR, ENCFF417WKH, ENCFF484FBY, ENCFF716BBX 674824839 ENCODE Processing Pipeline fe83067f8300feb73398479ef02308b6 https://www.encodeproject.org/files/ENCFF311MIP/@@download/ENCFF311MIP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF450BMQ bigBed narrowPeak replicated peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF721TVA 1496516 ENCODE Processing Pipeline e5e2a9c6d106cc1852be757fea16e8d2 https://www.encodeproject.org/files/ENCFF450BMQ/@@download/ENCFF450BMQ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF523GJY bam unfiltered alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMQ, ENCFF018NEO 1518189265 ENCODE Processing Pipeline 702b50a63b808e2c370399dc34cd7cf7 https://www.encodeproject.org/files/ENCFF523GJY/@@download/ENCFF523GJY.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF934MNE bam unfiltered alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMK, ENCFF018NEO 1357372917 ENCODE Processing Pipeline 3502c0206c9d3a59257e5ddd0294dba3 https://www.encodeproject.org/files/ENCFF934MNE/@@download/ENCFF934MNE.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF203FLD bam alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMQ, ENCFF018NEO 910553827 ENCODE Processing Pipeline 6d947fc117a324e06fb09dbfecd38924 https://www.encodeproject.org/files/ENCFF203FLD/@@download/ENCFF203FLD.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF657XFB bam alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMK, ENCFF018NEO 826346480 ENCODE Processing Pipeline 262f573d7cf06b421d222d2fc44b1cf0 https://www.encodeproject.org/files/ENCFF657XFB/@@download/ENCFF657XFB.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF049FIU bed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF504TWB, ENCFF657XFB 513244 ENCODE Processing Pipeline 7bd8700cbd0f65aa1af902b5cdde26b7 https://www.encodeproject.org/files/ENCFF049FIU/@@download/ENCFF049FIU.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF248ZCT bed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF203FLD, ENCFF963FIQ 528124 ENCODE Processing Pipeline 9057a76ef7b98859dd9f96962f7904f3 https://www.encodeproject.org/files/ENCFF248ZCT/@@download/ENCFF248ZCT.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF352VCX bigBed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF049FIU 1668185 ENCODE Processing Pipeline 96b3fe6734e533d1706da2b50dcee9a6 https://www.encodeproject.org/files/ENCFF352VCX/@@download/ENCFF352VCX.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF336NHM bed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF203FLD, ENCFF504TWB, ENCFF657XFB, ENCFF963FIQ 593406 ENCODE Processing Pipeline 96f8e7734714da9af28685d1308fb472 https://www.encodeproject.org/files/ENCFF336NHM/@@download/ENCFF336NHM.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF460RWQ bigBed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248ZCT 1667599 ENCODE Processing Pipeline ccb9d889ad6f0a0fae0a518e365e5cd2 https://www.encodeproject.org/files/ENCFF460RWQ/@@download/ENCFF460RWQ.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF885WGC bigBed narrowPeak peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF336NHM 1737392 ENCODE Processing Pipeline 3bec9f6e7382e3bc66b9fb96f76415cf https://www.encodeproject.org/files/ENCFF885WGC/@@download/ENCFF885WGC.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF113AOG bigWig signal p-value ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF504TWB, ENCFF657XFB 332158967 ENCODE Processing Pipeline 02b753d2c544e37a7250419c29a76daa https://www.encodeproject.org/files/ENCFF113AOG/@@download/ENCFF113AOG.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF500PDV bigWig signal p-value ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF203FLD, ENCFF963FIQ 391434563 ENCODE Processing Pipeline 5f199aef86defb6ba58335d9f88934d5 https://www.encodeproject.org/files/ENCFF500PDV/@@download/ENCFF500PDV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF271AWC bigWig signal p-value ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF203FLD, ENCFF504TWB, ENCFF657XFB, ENCFF963FIQ 627669941 ENCODE Processing Pipeline 192682b89a8845408047973fd2fad876 https://www.encodeproject.org/files/ENCFF271AWC/@@download/ENCFF271AWC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF470NHK bigWig fold change over control ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF504TWB, ENCFF657XFB 339939190 ENCODE Processing Pipeline 4815a0708117e164a1a7f7944ae24832 https://www.encodeproject.org/files/ENCFF470NHK/@@download/ENCFF470NHK.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF201TXK bigWig fold change over control ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF203FLD, ENCFF963FIQ 369921678 ENCODE Processing Pipeline a9b18d255ef2bbc12edae38d0b2dc3d5 https://www.encodeproject.org/files/ENCFF201TXK/@@download/ENCFF201TXK.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF837LYE bigWig fold change over control ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF203FLD, ENCFF504TWB, ENCFF657XFB, ENCFF963FIQ 728504086 ENCODE Processing Pipeline a696dde197dd6f45269c4d8a02f445a3 https://www.encodeproject.org/files/ENCFF837LYE/@@download/ENCFF837LYE.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF729FLS bed narrowPeak replicated peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF049FIU, ENCFF248ZCT, ENCFF336NHM 651643 ENCODE Processing Pipeline 0d322ce937a6e923a73010b4e346dc9f https://www.encodeproject.org/files/ENCFF729FLS/@@download/ENCFF729FLS.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF218ZAM bigBed narrowPeak replicated peaks ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF729FLS 1505861 ENCODE Processing Pipeline 386c690d6c70efeb904613c50cdfa2de https://www.encodeproject.org/files/ENCFF218ZAM/@@download/ENCFF218ZAM.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF002BVB fastq reads ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 36 single-ended 626626890 Bing Ren, UCSD 8de2922a8349b4f5fe7be3e47b7e71b5 SRA:SRR3651525 https://www.encodeproject.org/files/ENCFF002BVB/@@download/ENCFF002BVB.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVG fastq reads ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 36 single-ended 640228574 Bing Ren, UCSD ab1c24341ae7a593026fb114e0cb60e9 SRA:SRR3651522 https://www.encodeproject.org/files/ENCFF002BVG/@@download/ENCFF002BVG.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVC fastq reads ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 662226316 Bing Ren, UCSD af0a2f11eca4ab51298ff648529a9a13 SRA:SRR3651526 https://www.encodeproject.org/files/ENCFF002BVC/@@download/ENCFF002BVC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVE fastq reads ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 696191502 Bing Ren, UCSD 31d78d439410f7287ab3258245582c6e SRA:SRR3651523 https://www.encodeproject.org/files/ENCFF002BVE/@@download/ENCFF002BVE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF743GVV fastq reads ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 3 50 single-ended 640525257 Bing Ren, UCSD ee678f47e3d4ba1dbdfde88deee265ca SRA:SRR3651527 https://www.encodeproject.org/files/ENCFF743GVV/@@download/ENCFF743GVV.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF139LJC fastq reads ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 3 50 single-ended 843576540 Bing Ren, UCSD c39c5ca4ed44020b9489818b235e8448 SRA:SRR3651524 https://www.encodeproject.org/files/ENCFF139LJC/@@download/ENCFF139LJC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF273LRW bam alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BVE, ENCFF002BVG, ENCFF139LJC, ENCFF806TVZ 1332632568 ENCODE Processing Pipeline 64c7505965633e73257fd145f36bf1fd https://www.encodeproject.org/files/ENCFF273LRW/@@download/ENCFF273LRW.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF697UCV bam alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BVB, ENCFF002BVC, ENCFF743GVV, ENCFF806TVZ 1352812173 ENCODE Processing Pipeline 4147fd189ee3444da6fb3844a726e103 https://www.encodeproject.org/files/ENCFF697UCV/@@download/ENCFF697UCV.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF463QAI bed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF273LRW, ENCFF656MYX, ENCFF844PWX 1251082 ENCODE Processing Pipeline e98c4ce836b9038cf6e8c20209687790 https://www.encodeproject.org/files/ENCFF463QAI/@@download/ENCFF463QAI.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF442NHR bed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF273LRW, ENCFF656MYX, ENCFF697UCV, ENCFF844PWX 721518 ENCODE Processing Pipeline d09620fb6e18fb90ee998d3166fe7426 https://www.encodeproject.org/files/ENCFF442NHR/@@download/ENCFF442NHR.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF286URP bigBed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF463QAI 2656150 ENCODE Processing Pipeline 564cee69ec4ed5d8e7e006f7114d9d7d https://www.encodeproject.org/files/ENCFF286URP/@@download/ENCFF286URP.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF835TTC bigBed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF107QFB 2313976 ENCODE Processing Pipeline 68b963809ef4ba9904281754f6c8e69e https://www.encodeproject.org/files/ENCFF835TTC/@@download/ENCFF835TTC.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF107QFB bed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF656MYX, ENCFF697UCV, ENCFF844PWX 1064010 ENCODE Processing Pipeline efd42fe804ecdda7afbe1309994141df https://www.encodeproject.org/files/ENCFF107QFB/@@download/ENCFF107QFB.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF342EII bigBed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF442NHR 1526098 ENCODE Processing Pipeline 3d633e2158aec772b8e777b24da269ec https://www.encodeproject.org/files/ENCFF342EII/@@download/ENCFF342EII.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF060OIF bigWig signal p-value ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF273LRW, ENCFF656MYX, ENCFF844PWX 496833304 ENCODE Processing Pipeline 91241eff316b302697d09735ccac7d58 https://www.encodeproject.org/files/ENCFF060OIF/@@download/ENCFF060OIF.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF391QEX bigWig signal p-value ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF656MYX, ENCFF697UCV, ENCFF844PWX 538238499 ENCODE Processing Pipeline 0db9ff5fc3354fe5171b4fbabe523bf0 https://www.encodeproject.org/files/ENCFF391QEX/@@download/ENCFF391QEX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF555ZPK bigWig signal p-value ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF273LRW, ENCFF656MYX, ENCFF697UCV, ENCFF844PWX 529161547 ENCODE Processing Pipeline 257a5a798c44076fcf7880c31ed57d65 https://www.encodeproject.org/files/ENCFF555ZPK/@@download/ENCFF555ZPK.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF640KQY bigWig fold change over control ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF656MYX, ENCFF697UCV, ENCFF844PWX 501605593 ENCODE Processing Pipeline e8c1be13bcdbb8734c4da8d848a966e5 https://www.encodeproject.org/files/ENCFF640KQY/@@download/ENCFF640KQY.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF862VRH bigWig fold change over control ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF273LRW, ENCFF656MYX, ENCFF844PWX 493340542 ENCODE Processing Pipeline 9a900e3de313d2d8950b14f1128bf279 https://www.encodeproject.org/files/ENCFF862VRH/@@download/ENCFF862VRH.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF852ZRO bigWig fold change over control ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF273LRW, ENCFF656MYX, ENCFF697UCV, ENCFF844PWX 805731611 ENCODE Processing Pipeline 7a5eb8dd0a5c93a389d3edbf686bba93 https://www.encodeproject.org/files/ENCFF852ZRO/@@download/ENCFF852ZRO.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF981KJL bed narrowPeak replicated peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF107QFB, ENCFF442NHR, ENCFF463QAI 599582 ENCODE Processing Pipeline 2db3957f3d1eb7b7a9d4930a8ab72e15 https://www.encodeproject.org/files/ENCFF981KJL/@@download/ENCFF981KJL.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF611ZPE bigBed narrowPeak replicated peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF981KJL 1203923 ENCODE Processing Pipeline c95f7bec20949ba40d08f77fb531b612 https://www.encodeproject.org/files/ENCFF611ZPE/@@download/ENCFF611ZPE.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF105HAM bam unfiltered alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVB, ENCFF002BVC, ENCFF018NEO, ENCFF743GVV 2259284669 ENCODE Processing Pipeline 1845aa70c9dd1ee5b76c28fb7968a441 https://www.encodeproject.org/files/ENCFF105HAM/@@download/ENCFF105HAM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF514JSR bam unfiltered alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVE, ENCFF002BVG, ENCFF018NEO, ENCFF139LJC 2470048661 ENCODE Processing Pipeline a4715ee5a91748c1581c03795ae75b00 https://www.encodeproject.org/files/ENCFF514JSR/@@download/ENCFF514JSR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF242VMG bam alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVB, ENCFF002BVC, ENCFF018NEO, ENCFF743GVV 1212448287 ENCODE Processing Pipeline 4269ef77c052c733ac110974a4b4b9f8 https://www.encodeproject.org/files/ENCFF242VMG/@@download/ENCFF242VMG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF811ANE bam alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVE, ENCFF002BVG, ENCFF018NEO, ENCFF139LJC 1167643829 ENCODE Processing Pipeline 9e2f943d47fa37f42f93bd910a26bfa0 https://www.encodeproject.org/files/ENCFF811ANE/@@download/ENCFF811ANE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF415GNN bed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF811ANE 1332239 ENCODE Processing Pipeline fbcf3e1a931bb4e29d60a65ce2070d9c https://www.encodeproject.org/files/ENCFF415GNN/@@download/ENCFF415GNN.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF543PGH bed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF242VMG, ENCFF627JLU 1051749 ENCODE Processing Pipeline 04ca048a2823c1af3e1661e2d4a87d0d https://www.encodeproject.org/files/ENCFF543PGH/@@download/ENCFF543PGH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF457BKD bed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF242VMG, ENCFF627JLU, ENCFF811ANE 651103 ENCODE Processing Pipeline aaf367d3b2039477fb2a1a182aedd81d https://www.encodeproject.org/files/ENCFF457BKD/@@download/ENCFF457BKD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF152OVH bigBed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF415GNN 2817604 ENCODE Processing Pipeline e418b3019337bca6728c18045912f693 https://www.encodeproject.org/files/ENCFF152OVH/@@download/ENCFF152OVH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF284PJM bigBed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF543PGH 2294766 ENCODE Processing Pipeline 028f9b621da556c6524210959235513e https://www.encodeproject.org/files/ENCFF284PJM/@@download/ENCFF284PJM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF271BJH bigBed narrowPeak peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF457BKD 1412921 ENCODE Processing Pipeline 3c11d8121c2a2d550c098bf5278385c2 https://www.encodeproject.org/files/ENCFF271BJH/@@download/ENCFF271BJH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF350GLD bigWig signal p-value ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF811ANE 493968804 ENCODE Processing Pipeline b32a0e633ba37644ca651268569d8de6 https://www.encodeproject.org/files/ENCFF350GLD/@@download/ENCFF350GLD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF186ADB bigWig signal p-value ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF242VMG, ENCFF627JLU 385725981 ENCODE Processing Pipeline 27a1b2471eabb07653a8609c9cdedfa8 https://www.encodeproject.org/files/ENCFF186ADB/@@download/ENCFF186ADB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF152OQE bigWig signal p-value ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF242VMG, ENCFF627JLU, ENCFF811ANE 522716530 ENCODE Processing Pipeline 0f8527eaffda4d63a1dca42441085090 https://www.encodeproject.org/files/ENCFF152OQE/@@download/ENCFF152OQE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF214FSX bigWig fold change over control ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF811ANE 474107127 ENCODE Processing Pipeline 3bcb5a70c1114f2ecb5ee9a9a34c65de https://www.encodeproject.org/files/ENCFF214FSX/@@download/ENCFF214FSX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF577OGU bigWig fold change over control ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF242VMG, ENCFF627JLU 499618238 ENCODE Processing Pipeline 3b37a626efe5084650cf5ac4c5869a3f https://www.encodeproject.org/files/ENCFF577OGU/@@download/ENCFF577OGU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF480NZE bigWig fold change over control ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF242VMG, ENCFF627JLU, ENCFF811ANE 795200396 ENCODE Processing Pipeline d3e156f31d8485441f41d2893c4e07e1 https://www.encodeproject.org/files/ENCFF480NZE/@@download/ENCFF480NZE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF655QAK bed narrowPeak replicated peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF415GNN, ENCFF457BKD, ENCFF543PGH 578853 ENCODE Processing Pipeline 83ddbe14e0ac2e31f4034b33c21fee5f https://www.encodeproject.org/files/ENCFF655QAK/@@download/ENCFF655QAK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF847WNU bigBed narrowPeak replicated peaks ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF655QAK 1180802 ENCODE Processing Pipeline 5593ab192e0fe46208fc0477cb240b5e https://www.encodeproject.org/files/ENCFF847WNU/@@download/ENCFF847WNU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001MYN bigBed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHF 1095292 Michael Snyder, Stanford bdca072f4d1f3f6fb8ae7a1f17e7b918 https://www.encodeproject.org/files/ENCFF001MYN/@@download/ENCFF001MYN.bigBed mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYO fastq reads ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1113703596 Michael Snyder, Stanford 937a801806bdcdf5b62dc818b1a35826 https://www.encodeproject.org/files/ENCFF001MYO/@@download/ENCFF001MYO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTS/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYP bam alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001MYO 612052127 Michael Snyder, Stanford 324cb83b2d6935a5172b5ab55a37ec48 https://www.encodeproject.org/files/ENCFF001MYP/@@download/ENCFF001MYP.bam mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYR fastq reads ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 671436139 Michael Snyder, Stanford 37fbc0350c56120dfe5a910c389a7063 https://www.encodeproject.org/files/ENCFF001MYR/@@download/ENCFF001MYR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTU/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYS bam alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001MYR 403982685 Michael Snyder, Stanford 3016a70d94713eed28d748431f545a35 https://www.encodeproject.org/files/ENCFF001MYS/@@download/ENCFF001MYS.bam mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MYU bigWig signal ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MYP, ENCFF001MYS 223273643 Michael Snyder, Stanford 6647971a23871ac4b3499637e9654e94 https://www.encodeproject.org/files/ENCFF001MYU/@@download/ENCFF001MYU.bigWig mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001YHF bed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MYP, ENCFF001MYS 392924 Michael Snyder, Stanford 784ed4ab21e7ab1e38e6fedd5dbed92f https://www.encodeproject.org/files/ENCFF001YHF/@@download/ENCFF001YHF.bed.gz mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF681FJP bam unfiltered alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYO, ENCFF018NEO 1234544002 ENCODE Processing Pipeline 9f009cd6ab2f34d2c34c2c827770918a https://www.encodeproject.org/files/ENCFF681FJP/@@download/ENCFF681FJP.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF334GUP bam unfiltered alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYR, ENCFF018NEO 756166413 ENCODE Processing Pipeline 288283994fece39d22fec557f3a62890 https://www.encodeproject.org/files/ENCFF334GUP/@@download/ENCFF334GUP.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF716FUA bam alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYR, ENCFF018NEO 543868127 ENCODE Processing Pipeline 9e7a71617ce79ddd16a1023eb966e7d0 https://www.encodeproject.org/files/ENCFF716FUA/@@download/ENCFF716FUA.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF614DCB bam alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYO, ENCFF018NEO 872320846 ENCODE Processing Pipeline 2ca92694ea0e3c09009e8586d7ded0a1 https://www.encodeproject.org/files/ENCFF614DCB/@@download/ENCFF614DCB.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF603AJH bed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF716FUA 1727830 ENCODE Processing Pipeline 3c00a073e1a88506517a894824a8d807 https://www.encodeproject.org/files/ENCFF603AJH/@@download/ENCFF603AJH.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF953CRC bigBed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF766EIZ 6258705 ENCODE Processing Pipeline 93a5d4b3f6355d549f1ae9ffa4fcaeb9 https://www.encodeproject.org/files/ENCFF953CRC/@@download/ENCFF953CRC.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF332FPL bed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF614DCB, ENCFF716FUA 1961087 ENCODE Processing Pipeline 655270f2f8d64005e3fd1c2ba725ce9d https://www.encodeproject.org/files/ENCFF332FPL/@@download/ENCFF332FPL.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF766EIZ bed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF614DCB 2250901 ENCODE Processing Pipeline 26cc7c8d7f903a64d79e7fa66c0b6929 https://www.encodeproject.org/files/ENCFF766EIZ/@@download/ENCFF766EIZ.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF360IED bigBed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF603AJH 4977690 ENCODE Processing Pipeline 617092ca3e095df5faca4e909a9fae03 https://www.encodeproject.org/files/ENCFF360IED/@@download/ENCFF360IED.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF036WRS bigBed narrowPeak peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF332FPL 5305237 ENCODE Processing Pipeline 153afd727383b243a2997cecf44c93e1 https://www.encodeproject.org/files/ENCFF036WRS/@@download/ENCFF036WRS.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF417BYU bigWig signal p-value ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF614DCB 444109064 ENCODE Processing Pipeline 65f81d706111acfa7b7201799ab4c018 https://www.encodeproject.org/files/ENCFF417BYU/@@download/ENCFF417BYU.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF609UIY bigWig signal p-value ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF716FUA 362941673 ENCODE Processing Pipeline 420712503fa48c58805116ed0f5229c6 https://www.encodeproject.org/files/ENCFF609UIY/@@download/ENCFF609UIY.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF826WDZ bigWig signal p-value ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF614DCB, ENCFF716FUA 575850691 ENCODE Processing Pipeline af0c04de3ae37fb1ae2bbd748a4555b3 https://www.encodeproject.org/files/ENCFF826WDZ/@@download/ENCFF826WDZ.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF506BWW bigWig fold change over control ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF614DCB 444753048 ENCODE Processing Pipeline 9dc2308b1b1e33061ab2e822d92cc9e7 https://www.encodeproject.org/files/ENCFF506BWW/@@download/ENCFF506BWW.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF300HNZ bigWig fold change over control ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF716FUA 337586253 ENCODE Processing Pipeline 2af95be011699ce364aa556aa39a4112 https://www.encodeproject.org/files/ENCFF300HNZ/@@download/ENCFF300HNZ.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF335VHL bigWig fold change over control ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF614DCB, ENCFF716FUA 626071499 ENCODE Processing Pipeline 97b30d5c28c936b9a8d1f9410c122d4d https://www.encodeproject.org/files/ENCFF335VHL/@@download/ENCFF335VHL.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF357ROC bed narrowPeak replicated peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF332FPL, ENCFF603AJH, ENCFF766EIZ 1713244 ENCODE Processing Pipeline 69b3920ca02c1cf069134aaa79d87958 https://www.encodeproject.org/files/ENCFF357ROC/@@download/ENCFF357ROC.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF617PAC bigBed narrowPeak replicated peaks ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF357ROC 3550183 ENCODE Processing Pipeline 11c84e7d048d58b8ac89c4cee3bfe0bf https://www.encodeproject.org/files/ENCFF617PAC/@@download/ENCFF617PAC.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF753KQV bam unfiltered alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF300USB, ENCFF514LBY 3783681107 ENCODE Processing Pipeline c8fb337181fd079589c92c028bec29d2 https://www.encodeproject.org/files/ENCFF753KQV/@@download/ENCFF753KQV.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF226QFS bam unfiltered alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF518ULJ, ENCFF954VRX 3828391236 ENCODE Processing Pipeline 967611d8e1f545a7d77a981303403c33 https://www.encodeproject.org/files/ENCFF226QFS/@@download/ENCFF226QFS.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF954VRX fastq reads ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2654874733 Bing Ren, UCSD a7ad972de2f309956e28a27f097fae04 SRA:SRR3652842 https://www.encodeproject.org/files/ENCFF954VRX/@@download/ENCFF954VRX.fastq.gz Illumina HiSeq 2000 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF514LBY fastq reads ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2642209415 Bing Ren, UCSD c203f49ebcea925fa1ac71241e814266 SRA:SRR3652844 https://www.encodeproject.org/files/ENCFF514LBY/@@download/ENCFF514LBY.fastq.gz Illumina HiSeq 2000 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF082TGD bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF954VRX 2155680869 ENCODE Processing Pipeline 4908802935b64ff5721ab0ee065a11e4 https://www.encodeproject.org/files/ENCFF082TGD/@@download/ENCFF082TGD.bam mm10-minimal archived inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF314ZXJ bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF514LBY, ENCFF806TVZ 2138909393 ENCODE Processing Pipeline 8673aac04e7677247505cabc52a036a4 https://www.encodeproject.org/files/ENCFF314ZXJ/@@download/ENCFF314ZXJ.bam mm10-minimal archived inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF320FCX bam unfiltered alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018NEO, ENCFF514LBY 3221405565 ENCODE Processing Pipeline 440ba64db6b73cab040ee25b87b0875a https://www.encodeproject.org/files/ENCFF320FCX/@@download/ENCFF320FCX.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF549OED bam unfiltered alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF018NEO, ENCFF954VRX 3234856249 ENCODE Processing Pipeline 7958022d0c53c1f6ad61ea67c9a077c7 https://www.encodeproject.org/files/ENCFF549OED/@@download/ENCFF549OED.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF801CNP bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018NEO, ENCFF514LBY 2138335446 ENCODE Processing Pipeline eabb95671cd22e00c3121f3149e322ad https://www.encodeproject.org/files/ENCFF801CNP/@@download/ENCFF801CNP.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF123XKF bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF018NEO, ENCFF954VRX 2155052268 ENCODE Processing Pipeline 3a60cd4b04e47acf15caa22bf1f9e77d https://www.encodeproject.org/files/ENCFF123XKF/@@download/ENCFF123XKF.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF300USB fastq reads ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 439110997 Bing Ren, UCSD baad39c8bd14078c8f6650bdadfb49e9 SRA:SRR3652845 https://www.encodeproject.org/files/ENCFF300USB/@@download/ENCFF300USB.fastq.gz Illumina HiSeq 4000 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF518ULJ fastq reads ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 465848715 Bing Ren, UCSD 210c3d3804dbd2758a0d332359f7aefa SRA:SRR3652843 https://www.encodeproject.org/files/ENCFF518ULJ/@@download/ENCFF518ULJ.fastq.gz Illumina HiSeq 4000 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF615JIE bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF518ULJ, ENCFF954VRX 2556100616 ENCODE Processing Pipeline 7a6584eb7ed56054de7a2393c2e759e6 https://www.encodeproject.org/files/ENCFF615JIE/@@download/ENCFF615JIE.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF164ZUK bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF300USB, ENCFF514LBY 2517156365 ENCODE Processing Pipeline 4c3bc83088477727fb68757fde6f6c8d https://www.encodeproject.org/files/ENCFF164ZUK/@@download/ENCFF164ZUK.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF107RHP fastq reads ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2511014448 Bing Ren, UCSD f513d061780b13c32077fec7ef8da578 SRA:SRR4235733 https://www.encodeproject.org/files/ENCFF107RHP/@@download/ENCFF107RHP.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF445IOU fastq reads ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 2 50 single-ended 2001496611 Bing Ren, UCSD 869681d3fdd686089f2d8bd14f43cbaa SRA:SRR4235734 https://www.encodeproject.org/files/ENCFF445IOU/@@download/ENCFF445IOU.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF429ISC fastq reads ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 3 50 single-ended 2304727015 Bing Ren, UCSD 678be4fc901bace0aab40c30764ef674 SRA:SRR4235736 https://www.encodeproject.org/files/ENCFF429ISC/@@download/ENCFF429ISC.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF163DJE fastq reads ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 3 50 single-ended 1287646843 Bing Ren, UCSD 1ab033606e40ddad2f497b9e67950625 SRA:SRR4235735 https://www.encodeproject.org/files/ENCFF163DJE/@@download/ENCFF163DJE.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF317THG fastq reads ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1878250553 Bing Ren, UCSD 73878590e3b54047d0a811dd2e00587c SRA:SRR4235737 https://www.encodeproject.org/files/ENCFF317THG/@@download/ENCFF317THG.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF788RXF fastq reads ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 2681208114 Bing Ren, UCSD 7b5d96af3077f2d1d8c028f13df964f8 SRA:SRR4235738 https://www.encodeproject.org/files/ENCFF788RXF/@@download/ENCFF788RXF.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF454WYC bam unfiltered alignments ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF107RHP, ENCFF163DJE, ENCFF445IOU 6374312849 ENCODE Processing Pipeline cbc474335b6ff7807b199811a70a1167 https://www.encodeproject.org/files/ENCFF454WYC/@@download/ENCFF454WYC.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF525DKA bam unfiltered alignments ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF317THG, ENCFF429ISC, ENCFF788RXF 7255938071 ENCODE Processing Pipeline 529339a96f8b0baf54d2fc6ac095c5e4 https://www.encodeproject.org/files/ENCFF525DKA/@@download/ENCFF525DKA.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF854LJH bam alignments ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF317THG, ENCFF429ISC, ENCFF788RXF 2079251232 ENCODE Processing Pipeline 622ac9266106bfda64ed7ed1bad01418 https://www.encodeproject.org/files/ENCFF854LJH/@@download/ENCFF854LJH.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF018UFV bam alignments ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF107RHP, ENCFF163DJE, ENCFF445IOU 2062487343 ENCODE Processing Pipeline 5803dcf7c42c74e355bb3223cfa26af1 https://www.encodeproject.org/files/ENCFF018UFV/@@download/ENCFF018UFV.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF872MQC bed narrowPeak peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF778IFH, ENCFF854LJH 2334990 ENCODE Processing Pipeline df9e0df3f3b6626d4fb7bffde9b26e98 https://www.encodeproject.org/files/ENCFF872MQC/@@download/ENCFF872MQC.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF025XMI bed narrowPeak peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018UFV, ENCFF689YLF 2033889 ENCODE Processing Pipeline a389aaf5cccfc4182c9da3d8279504a4 https://www.encodeproject.org/files/ENCFF025XMI/@@download/ENCFF025XMI.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF089JXY bigBed narrowPeak peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF025XMI 4761970 ENCODE Processing Pipeline bd28ff1ea7ea438b8f2f4915228cf344 https://www.encodeproject.org/files/ENCFF089JXY/@@download/ENCFF089JXY.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF959JWW bed narrowPeak peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF018UFV, ENCFF689YLF, ENCFF778IFH, ENCFF854LJH 2714947 ENCODE Processing Pipeline 95b9fc023ec88c884e1dfc2130e34630 https://www.encodeproject.org/files/ENCFF959JWW/@@download/ENCFF959JWW.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF930OOM bigBed narrowPeak peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF872MQC 5322647 ENCODE Processing Pipeline b3d0f5aaf5fd2b51190b0a08b78b354e https://www.encodeproject.org/files/ENCFF930OOM/@@download/ENCFF930OOM.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF215FVL bigBed narrowPeak peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF959JWW 6144689 ENCODE Processing Pipeline 98b5498d9e0c13add91be89b09b4bc97 https://www.encodeproject.org/files/ENCFF215FVL/@@download/ENCFF215FVL.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF522JDL bigWig signal p-value ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF778IFH, ENCFF854LJH 917890463 ENCODE Processing Pipeline 442ee33bd5a5e32e4936a0cd71ea7030 https://www.encodeproject.org/files/ENCFF522JDL/@@download/ENCFF522JDL.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF977AJS bigWig signal p-value ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018UFV, ENCFF689YLF 695366622 ENCODE Processing Pipeline ac212a6e735d6611a7f1149f84d42219 https://www.encodeproject.org/files/ENCFF977AJS/@@download/ENCFF977AJS.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF062TPX bigWig fold change over control ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018UFV, ENCFF689YLF 894579178 ENCODE Processing Pipeline 25581a3d0e722cb5f9febed02764e298 https://www.encodeproject.org/files/ENCFF062TPX/@@download/ENCFF062TPX.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF697PVB bigWig signal p-value ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF018UFV, ENCFF689YLF, ENCFF778IFH, ENCFF854LJH 1300375387 ENCODE Processing Pipeline 79c7ed4f5a9c7a071f64b8d1dba25ae6 https://www.encodeproject.org/files/ENCFF697PVB/@@download/ENCFF697PVB.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF536FXL bigWig fold change over control ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF778IFH, ENCFF854LJH 880124771 ENCODE Processing Pipeline 13c5295c9c6a400ea715268a73553f10 https://www.encodeproject.org/files/ENCFF536FXL/@@download/ENCFF536FXL.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF115VPJ bed narrowPeak replicated peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF025XMI, ENCFF872MQC, ENCFF959JWW 1683514 ENCODE Processing Pipeline fdd4d45ca1603b9ca53e2e11f3f35c1f https://www.encodeproject.org/files/ENCFF115VPJ/@@download/ENCFF115VPJ.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF597QLV bigBed narrowPeak replicated peaks ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF115VPJ 3145293 ENCODE Processing Pipeline 22ac06248f2442333add228ffc371ae5 https://www.encodeproject.org/files/ENCFF597QLV/@@download/ENCFF597QLV.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF063ZLI bigWig fold change over control ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF018UFV, ENCFF689YLF, ENCFF778IFH, ENCFF854LJH 1554339620 ENCODE Processing Pipeline 190be5d8c1d91c6ec0c1562fb6c8caa6 https://www.encodeproject.org/files/ENCFF063ZLI/@@download/ENCFF063ZLI.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF001NOZ bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NPB 356696417 Michael Snyder, Stanford ed92eef6030b264fb99df9d766711c36 https://www.encodeproject.org/files/ENCFF001NOZ/@@download/ENCFF001NOZ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPA bigBed narrowPeak peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJA 104783 Michael Snyder, Stanford 464c95f204c398835ddefe4424664355 https://www.encodeproject.org/files/ENCFF001NPA/@@download/ENCFF001NPA.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPB fastq reads ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 764843245 Michael Snyder, Stanford 902e7f1b9aea32b694d088e304ffbbe4 https://www.encodeproject.org/files/ENCFF001NPB/@@download/ENCFF001NPB.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPD fastq reads ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 888145478 Michael Snyder, Stanford e1040dcdbdd306a5be3c414bd9de63e9 https://www.encodeproject.org/files/ENCFF001NPD/@@download/ENCFF001NPD.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPF bigWig signal ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOZ, ENCFF001NPG 137712215 Michael Snyder, Stanford ebccbc22596cd74ef212a8db00ee335c https://www.encodeproject.org/files/ENCFF001NPF/@@download/ENCFF001NPF.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPG bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NPD 442106882 Michael Snyder, Stanford 18f8a9c7618f2dd91790b33fe99ff668 https://www.encodeproject.org/files/ENCFF001NPG/@@download/ENCFF001NPG.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJA bed narrowPeak peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOZ, ENCFF001NPG 17168 Michael Snyder, Stanford bafc4389231ea3d1e2879eb648f34dc5 https://www.encodeproject.org/files/ENCFF001YJA/@@download/ENCFF001YJA.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF092SQN bam unfiltered alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NPB, ENCFF018NEO 830442862 ENCODE Processing Pipeline ec40f543294de993445374a6b7b2590b https://www.encodeproject.org/files/ENCFF092SQN/@@download/ENCFF092SQN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF801BQB bam unfiltered alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NPD, ENCFF018NEO 952084117 ENCODE Processing Pipeline a8f05f8a63cf7014fcb074476bb7f7cc https://www.encodeproject.org/files/ENCFF801BQB/@@download/ENCFF801BQB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF788RAA bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NPB, ENCFF018NEO 503106824 ENCODE Processing Pipeline 9aba8664ae071273f4cb4f7f4b771c94 https://www.encodeproject.org/files/ENCFF788RAA/@@download/ENCFF788RAA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF084ZDT bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NPD, ENCFF018NEO 590045056 ENCODE Processing Pipeline 12775a58f71c6b87ae9048364d93d03a https://www.encodeproject.org/files/ENCFF084ZDT/@@download/ENCFF084ZDT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF479UDZ bigWig signal p-value ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF084ZDT, ENCFF171OVT 338348371 ENCODE Processing Pipeline ee1d4ebf21afbae071e629d1333a5792 https://www.encodeproject.org/files/ENCFF479UDZ/@@download/ENCFF479UDZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF498FCD bigWig fold change over control ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF084ZDT, ENCFF171OVT, ENCFF788RAA 437015423 ENCODE Processing Pipeline adad23d9c6f2a2210587cf1eafeb4ea1 https://www.encodeproject.org/files/ENCFF498FCD/@@download/ENCFF498FCD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF195SXV bed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF084ZDT, ENCFF171OVT 5732018 ENCODE Processing Pipeline 8df2416e07ec4f8e982e226f7b2a5511 https://www.encodeproject.org/files/ENCFF195SXV/@@download/ENCFF195SXV.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF609MSQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF195SXV 12738180 ENCODE Processing Pipeline 6507a6797f4aeff1a352c094c9a8a747 https://www.encodeproject.org/files/ENCFF609MSQ/@@download/ENCFF609MSQ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF573ZVG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF637JIJ 611861 ENCODE Processing Pipeline d3819960813246ecbe48aef280b8ecdd https://www.encodeproject.org/files/ENCFF573ZVG/@@download/ENCFF573ZVG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF675RRX bigWig signal p-value ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF788RAA 291567338 ENCODE Processing Pipeline 3856ea6ee9aad9c7f357957fe885739e https://www.encodeproject.org/files/ENCFF675RRX/@@download/ENCFF675RRX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF477YIX bigWig fold change over control ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF788RAA 246816103 ENCODE Processing Pipeline c070806b4fa69d8114f3c46e52da2de7 https://www.encodeproject.org/files/ENCFF477YIX/@@download/ENCFF477YIX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF699TBC bed narrowPeak conservative idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF133DYG, ENCFF195SXV, ENCFF263TBO, ENCFF547MET 226229 ENCODE Processing Pipeline 75afe455a0b2e0ca47d8249d0eab2177 https://www.encodeproject.org/files/ENCFF699TBC/@@download/ENCFF699TBC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF536GMW bigWig fold change over control ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF084ZDT, ENCFF171OVT 271550262 ENCODE Processing Pipeline 0b1091a80a74e01e01515ebf2c379129 https://www.encodeproject.org/files/ENCFF536GMW/@@download/ENCFF536GMW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF251KUC bigBed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF133DYG 12655701 ENCODE Processing Pipeline e899f32f9e9ac67bae1e6336d833ae6c https://www.encodeproject.org/files/ENCFF251KUC/@@download/ENCFF251KUC.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF938EWD bigWig signal p-value ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF084ZDT, ENCFF171OVT, ENCFF788RAA 310282877 ENCODE Processing Pipeline a807b735b87b80fa61cda0df7d1863d6 https://www.encodeproject.org/files/ENCFF938EWD/@@download/ENCFF938EWD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF263TBO bed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF788RAA 5956559 ENCODE Processing Pipeline b9b9574f4404e22c67237e3abba7f07e https://www.encodeproject.org/files/ENCFF263TBO/@@download/ENCFF263TBO.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF133DYG bed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF084ZDT, ENCFF171OVT, ENCFF788RAA 6589913 ENCODE Processing Pipeline 266bf1f4c23c82c5459199e235dc69f1 https://www.encodeproject.org/files/ENCFF133DYG/@@download/ENCFF133DYG.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF731LNT bigBed narrowPeak peaks and background as input for IDR ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF263TBO 12545701 ENCODE Processing Pipeline d0eb492cec75885c1138e2edf3b96552 https://www.encodeproject.org/files/ENCFF731LNT/@@download/ENCFF731LNT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF184KFH bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF699TBC 595351 ENCODE Processing Pipeline 67e4aea48d3f0456b86fb371dc0adbe3 https://www.encodeproject.org/files/ENCFF184KFH/@@download/ENCFF184KFH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF637JIJ bed narrowPeak optimal idr thresholded peaks ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF133DYG, ENCFF195SXV, ENCFF263TBO, ENCFF547MET 233724 ENCODE Processing Pipeline 8546e40e938b6db51319cb4b7f2dcbc3 https://www.encodeproject.org/files/ENCFF637JIJ/@@download/ENCFF637JIJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NBC bigBed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHO 1364480 Michael Snyder, Stanford 05c6765ad18dc99604b9b6ff10b32f1b https://www.encodeproject.org/files/ENCFF001NBC/@@download/ENCFF001NBC.bigBed mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBD fastq reads ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 965237535 Michael Snyder, Stanford e75876646ecc6e645f7d3c857e21a81d https://www.encodeproject.org/files/ENCFF001NBD/@@download/ENCFF001NBD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTS/ released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBE bam alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001NBD 543103760 Michael Snyder, Stanford e1b5644879f9a10cc4148e05788e87cd https://www.encodeproject.org/files/ENCFF001NBE/@@download/ENCFF001NBE.bam mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBG fastq reads ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 999871316 Michael Snyder, Stanford 4efd8d60929138025c1f7d0888a0a503 https://www.encodeproject.org/files/ENCFF001NBG/@@download/ENCFF001NBG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTU/ released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBI bigWig signal ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NBE, ENCFF001NBJ 235955793 Michael Snyder, Stanford 5fafaa1c3b95baa7af28912094018f3a https://www.encodeproject.org/files/ENCFF001NBI/@@download/ENCFF001NBI.bigWig mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBJ bam alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001NBG 554843158 Michael Snyder, Stanford 66a1261377718711e4fd68a392a672b9 https://www.encodeproject.org/files/ENCFF001NBJ/@@download/ENCFF001NBJ.bam mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001YHO bed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NBE, ENCFF001NBJ 569945 Michael Snyder, Stanford b03d27146c7ed9d7e161ec172c39c1b1 https://www.encodeproject.org/files/ENCFF001YHO/@@download/ENCFF001YHO.bed.gz mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF140AJB bam unfiltered alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NBD, ENCFF018NEO 1095843593 ENCODE Processing Pipeline fe341af72a6d746d76aa7f45fe705f7b https://www.encodeproject.org/files/ENCFF140AJB/@@download/ENCFF140AJB.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF545RMA bam unfiltered alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NBG, ENCFF018NEO 1121785739 ENCODE Processing Pipeline a68cea87f33f6ea0c3663b399b0f88de https://www.encodeproject.org/files/ENCFF545RMA/@@download/ENCFF545RMA.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF785CHB bam alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NBD, ENCFF018NEO 761835723 ENCODE Processing Pipeline 283ecf8cdc60f1d6067bc639a4e481e3 https://www.encodeproject.org/files/ENCFF785CHB/@@download/ENCFF785CHB.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF848HZK bam alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NBG, ENCFF018NEO 760821661 ENCODE Processing Pipeline 07641b74ed9ce11330eb0149b5f2c25c https://www.encodeproject.org/files/ENCFF848HZK/@@download/ENCFF848HZK.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF408IQO bed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF785CHB 1747301 ENCODE Processing Pipeline 3bf11ba9bdf88c1b239023273dfff045 https://www.encodeproject.org/files/ENCFF408IQO/@@download/ENCFF408IQO.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF042YQL bigBed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF408IQO 3415471 ENCODE Processing Pipeline a3927de957fa8d30f3c2d26ff7b6cbab https://www.encodeproject.org/files/ENCFF042YQL/@@download/ENCFF042YQL.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF004QKI bed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF848HZK 1128797 ENCODE Processing Pipeline ed4bebb42d0c96be6502608e3606628d https://www.encodeproject.org/files/ENCFF004QKI/@@download/ENCFF004QKI.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF582DQI bed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF785CHB, ENCFF848HZK 1496232 ENCODE Processing Pipeline 35d4bd3701ac141deac6a6296ee5a3ab https://www.encodeproject.org/files/ENCFF582DQI/@@download/ENCFF582DQI.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF434BQT bigBed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF004QKI 2501514 ENCODE Processing Pipeline 7d9340885da7c439af98f278be9bd742 https://www.encodeproject.org/files/ENCFF434BQT/@@download/ENCFF434BQT.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF278QKH bigWig signal p-value ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF785CHB 475881714 ENCODE Processing Pipeline 4dee478bff7f208e9fb377a6aeb5c9a1 https://www.encodeproject.org/files/ENCFF278QKH/@@download/ENCFF278QKH.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF978SUP bigBed narrowPeak peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF582DQI 2839047 ENCODE Processing Pipeline 3ab2666c86f244c24ac0388b1b1f256b https://www.encodeproject.org/files/ENCFF978SUP/@@download/ENCFF978SUP.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF183FYL bigWig signal p-value ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF848HZK 475724944 ENCODE Processing Pipeline 6008be0a749c9f0beb0eb097df3b3ac3 https://www.encodeproject.org/files/ENCFF183FYL/@@download/ENCFF183FYL.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF554NPC bigWig signal p-value ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF785CHB, ENCFF848HZK 573367411 ENCODE Processing Pipeline 039fd2853bd5c8f3dcb3ea26532e33fd https://www.encodeproject.org/files/ENCFF554NPC/@@download/ENCFF554NPC.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF805GRQ bigWig fold change over control ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF785CHB 409846361 ENCODE Processing Pipeline 02a421c3624f16762bf13c560d956faa https://www.encodeproject.org/files/ENCFF805GRQ/@@download/ENCFF805GRQ.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF891ZYX bigWig fold change over control ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF848HZK 394406730 ENCODE Processing Pipeline bf5ee07d217050ac6a6678bbd3848475 https://www.encodeproject.org/files/ENCFF891ZYX/@@download/ENCFF891ZYX.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF268EAZ bigWig fold change over control ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF785CHB, ENCFF848HZK 658844574 ENCODE Processing Pipeline e8ea50b86d9d26610a09ca712ebcfbb5 https://www.encodeproject.org/files/ENCFF268EAZ/@@download/ENCFF268EAZ.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF222HUM bed narrowPeak replicated peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF004QKI, ENCFF408IQO, ENCFF582DQI 795904 ENCODE Processing Pipeline 5739076c038c191863cf1e8c9732374b https://www.encodeproject.org/files/ENCFF222HUM/@@download/ENCFF222HUM.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF143MUK bigBed narrowPeak replicated peaks ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF222HUM 1402957 ENCODE Processing Pipeline ecce34c9c523f8bdc8d8f21da1548ce3 https://www.encodeproject.org/files/ENCFF143MUK/@@download/ENCFF143MUK.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001LRM bigBed broadPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBA 355901 Bing Ren, UCSD 9d6110d201fae502ad84832cb43601a5 https://www.encodeproject.org/files/ENCFF001LRM/@@download/ENCFF001LRM.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF001LRN bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LRW 252847852 Bing Ren, UCSD 5f40ca85f003bbd98aab468498409ce6 https://www.encodeproject.org/files/ENCFF001LRN/@@download/ENCFF001LRN.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF001LRP bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LRX 872212359 Bing Ren, UCSD c29e04dc5e490c77dbcf82d54059a1b9 https://www.encodeproject.org/files/ENCFF001LRP/@@download/ENCFF001LRP.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF001LRQ bigWig signal ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRN, ENCFF001LRP 64880373 Bing Ren, UCSD 7bcc61be6934c39a93d75dcf70351551 https://www.encodeproject.org/files/ENCFF001LRQ/@@download/ENCFF001LRQ.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF001LRW fastq reads ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 417563407 Bing Ren, UCSD 27d8add215abcec656bc1c4693839ffc https://www.encodeproject.org/files/ENCFF001LRW/@@download/ENCFF001LRW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF001LRX fastq reads ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 823221182 Bing Ren, UCSD 95cb223c7b394648881cb9f534817b72 https://www.encodeproject.org/files/ENCFF001LRX/@@download/ENCFF001LRX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KXE/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF001YBA bed broadPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LRN, ENCFF001LRP 239679 Bing Ren, UCSD 729a4f3a2da1ccb20453b309c363be79 https://www.encodeproject.org/files/ENCFF001YBA/@@download/ENCFF001YBA.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF016XYS bam unfiltered alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 909758866 ENCODE Processing Pipeline ca10c5c2b4255c6e629cd939498b27e4 https://www.encodeproject.org/files/ENCFF016XYS/@@download/ENCFF016XYS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF256SXG bam unfiltered alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 452265484 ENCODE Processing Pipeline 74d018c586254a7b4afdff835d54e5d1 https://www.encodeproject.org/files/ENCFF256SXG/@@download/ENCFF256SXG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF616NLO bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 523847669 ENCODE Processing Pipeline 0d24fd5a9f513c7d8b136e94e568710a https://www.encodeproject.org/files/ENCFF616NLO/@@download/ENCFF616NLO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF752ONZ bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 225050731 ENCODE Processing Pipeline 0d055c08c8bffff597817541925cf0a6 https://www.encodeproject.org/files/ENCFF752ONZ/@@download/ENCFF752ONZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF946MNK bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 247426860 ENCODE Processing Pipeline 976e0bf6b85757c12a9a2f470d623ee6 https://www.encodeproject.org/files/ENCFF946MNK/@@download/ENCFF946MNK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF334UXG bed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 4120219 ENCODE Processing Pipeline 79d0ec6ec0d0c6054d586fd28167c10f https://www.encodeproject.org/files/ENCFF334UXG/@@download/ENCFF334UXG.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF901PPE bed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 3930317 ENCODE Processing Pipeline 36b9b5be926e3d901a9a6423f3ee4e3c https://www.encodeproject.org/files/ENCFF901PPE/@@download/ENCFF901PPE.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF373NZZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF334UXG 9984903 ENCODE Processing Pipeline aa6836a99179567cf46724a9b7ed03d5 https://www.encodeproject.org/files/ENCFF373NZZ/@@download/ENCFF373NZZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF368ISS bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF972QLS 326849 ENCODE Processing Pipeline a564038ea3aff528231d47a64dbf3fe4 https://www.encodeproject.org/files/ENCFF368ISS/@@download/ENCFF368ISS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF334ZCC bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 170324960 ENCODE Processing Pipeline f37228c7a91f8fe5155496cea7de4240 https://www.encodeproject.org/files/ENCFF334ZCC/@@download/ENCFF334ZCC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF244AZR bigBed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF502SKJ 10482209 ENCODE Processing Pipeline 4c329459fede756796b9bb4e32d5284c https://www.encodeproject.org/files/ENCFF244AZR/@@download/ENCFF244AZR.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF074WOC bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 209740151 ENCODE Processing Pipeline 4fa9a53171fe5dd454fa805f5e4f10f7 https://www.encodeproject.org/files/ENCFF074WOC/@@download/ENCFF074WOC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF764GMG bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 107215420 ENCODE Processing Pipeline 40f22049c8ead83836f29fc04a71422c https://www.encodeproject.org/files/ENCFF764GMG/@@download/ENCFF764GMG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF142CFK bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 198623865 ENCODE Processing Pipeline 754ed5dd277c12c09f3031d461b533dd https://www.encodeproject.org/files/ENCFF142CFK/@@download/ENCFF142CFK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF596YYI bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 171510604 ENCODE Processing Pipeline 854ab94913aff7939e40341d59059fd4 https://www.encodeproject.org/files/ENCFF596YYI/@@download/ENCFF596YYI.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF502SKJ bed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 4513963 ENCODE Processing Pipeline acea9986f196080df2b9eb770ac6c266 https://www.encodeproject.org/files/ENCFF502SKJ/@@download/ENCFF502SKJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF862SJD bigBed narrowPeak peaks and background as input for IDR ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF901PPE 9301062 ENCODE Processing Pipeline 0f67a609f951232a90151665ce4e2b27 https://www.encodeproject.org/files/ENCFF862SJD/@@download/ENCFF862SJD.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF972QLS bed narrowPeak conservative idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF334UXG, ENCFF502SKJ, ENCFF547MET, ENCFF901PPE 176829 ENCODE Processing Pipeline d8bfbba97bc8720a4b27b2801b4270f1 https://www.encodeproject.org/files/ENCFF972QLS/@@download/ENCFF972QLS.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF443TPY bed narrowPeak optimal idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF334UXG, ENCFF502SKJ, ENCFF547MET, ENCFF901PPE 396257 ENCODE Processing Pipeline 632e5b2a4adf5b126946abb51f5ce210 https://www.encodeproject.org/files/ENCFF443TPY/@@download/ENCFF443TPY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF316XOB bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF443TPY 738022 ENCODE Processing Pipeline eaf01e7b5d4eb85a367d7aaee79cb978 https://www.encodeproject.org/files/ENCFF316XOB/@@download/ENCFF316XOB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF002AOP fastq reads ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 920944550 Bing Ren, UCSD 59dc27e46df05b0d3dcecc368ad184aa SRA:SRR3653299 https://www.encodeproject.org/files/ENCFF002AOP/@@download/ENCFF002AOP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQV/ released low read length, inconsistent control read length, low read depth ENCFF002AOU fastq reads ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1194626637 Bing Ren, UCSD 28bfcffa67a66825d09e0b6b42db07ad SRA:SRR3653298 https://www.encodeproject.org/files/ENCFF002AOU/@@download/ENCFF002AOU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQZ/ released low read length, inconsistent control read length, low read depth ENCFF594ZJA bam alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOP, ENCFF806TVZ 578318758 ENCODE Processing Pipeline 2177a887ca41d2a1941d5ae7c159ec11 https://www.encodeproject.org/files/ENCFF594ZJA/@@download/ENCFF594ZJA.bam mm10-minimal archived low read length, low read depth ENCFF654AEW bam alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOU, ENCFF806TVZ 783340048 ENCODE Processing Pipeline 20e3e143defb72cb5b0f195cfeeb60de https://www.encodeproject.org/files/ENCFF654AEW/@@download/ENCFF654AEW.bam mm10-minimal archived low read length, low read depth ENCFF683KQF bed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF654AEW 641180 ENCODE Processing Pipeline 72d52a7fbf6d184f6e090b947712dcef https://www.encodeproject.org/files/ENCFF683KQF/@@download/ENCFF683KQF.bed.gz mm10-minimal archived low read length, low read depth ENCFF664VYX bed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF238GCZ, ENCFF594ZJA, ENCFF654AEW, ENCFF967HVB 966970 ENCODE Processing Pipeline 1be50154efc1b3bdc0a982c582b83f5b https://www.encodeproject.org/files/ENCFF664VYX/@@download/ENCFF664VYX.bed.gz mm10-minimal archived low read length, low read depth ENCFF404IRE bigBed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF683KQF 1656853 ENCODE Processing Pipeline 08a0d7e1f08bab58ee6a8b262154700c https://www.encodeproject.org/files/ENCFF404IRE/@@download/ENCFF404IRE.bigBed mm10-minimal archived low read length, low read depth ENCFF076HRY bed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF594ZJA, ENCFF967HVB 709368 ENCODE Processing Pipeline c121d79d4175f2b44cc4d03b124b268d https://www.encodeproject.org/files/ENCFF076HRY/@@download/ENCFF076HRY.bed.gz mm10-minimal archived low read length, low read depth ENCFF953WPS bigBed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF076HRY 1846436 ENCODE Processing Pipeline a01243afcf5fe04c6ded77b402697acc https://www.encodeproject.org/files/ENCFF953WPS/@@download/ENCFF953WPS.bigBed mm10-minimal archived low read length, low read depth ENCFF812LZZ bigBed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF664VYX 2323094 ENCODE Processing Pipeline 8f05f5981f7066a9e6f72ff63da40372 https://www.encodeproject.org/files/ENCFF812LZZ/@@download/ENCFF812LZZ.bigBed mm10-minimal archived low read length, low read depth ENCFF328AEU bigWig signal p-value ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF654AEW 306040267 ENCODE Processing Pipeline 252dcc267c091c869556fcd69e07c548 https://www.encodeproject.org/files/ENCFF328AEU/@@download/ENCFF328AEU.bigWig mm10-minimal archived low read length, low read depth ENCFF291UHX bigWig signal p-value ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF594ZJA, ENCFF967HVB 309798205 ENCODE Processing Pipeline becec696d6a1a7cdb56b059b04600a5e https://www.encodeproject.org/files/ENCFF291UHX/@@download/ENCFF291UHX.bigWig mm10-minimal archived low read length, low read depth ENCFF867FQG bigWig signal p-value ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF238GCZ, ENCFF594ZJA, ENCFF654AEW, ENCFF967HVB 580524384 ENCODE Processing Pipeline ffc3791d2c13084f71c0adc2c26d41ac https://www.encodeproject.org/files/ENCFF867FQG/@@download/ENCFF867FQG.bigWig mm10-minimal archived low read length, low read depth ENCFF101BND bigWig fold change over control ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF654AEW 334489651 ENCODE Processing Pipeline fb15e8f70a3c55c048621b60ddfa6b58 https://www.encodeproject.org/files/ENCFF101BND/@@download/ENCFF101BND.bigWig mm10-minimal archived low read length, low read depth ENCFF752UBM bigWig fold change over control ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF594ZJA, ENCFF967HVB 287654377 ENCODE Processing Pipeline 0eed991bc6b096dfe1c9b9d7d1bd7796 https://www.encodeproject.org/files/ENCFF752UBM/@@download/ENCFF752UBM.bigWig mm10-minimal archived low read length, low read depth ENCFF120QHG bigWig fold change over control ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF238GCZ, ENCFF594ZJA, ENCFF654AEW, ENCFF967HVB 622589209 ENCODE Processing Pipeline 1333c2201f748d29e8d20f57d1d8793f https://www.encodeproject.org/files/ENCFF120QHG/@@download/ENCFF120QHG.bigWig mm10-minimal archived low read length, low read depth ENCFF858ECZ bed narrowPeak replicated peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF076HRY, ENCFF664VYX, ENCFF683KQF 530711 ENCODE Processing Pipeline c885bbf7289a43536da28e27862675b8 https://www.encodeproject.org/files/ENCFF858ECZ/@@download/ENCFF858ECZ.bed.gz mm10-minimal archived low read length, low read depth ENCFF448PZW bigBed narrowPeak replicated peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF858ECZ 1427352 ENCODE Processing Pipeline a305a43940ee7e452af7beacccb750bc https://www.encodeproject.org/files/ENCFF448PZW/@@download/ENCFF448PZW.bigBed mm10-minimal archived low read length, low read depth ENCFF650ZUZ bam unfiltered alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOP, ENCFF018NEO 968867114 ENCODE Processing Pipeline 06da7bcb4185e18df18ec416d8e22397 https://www.encodeproject.org/files/ENCFF650ZUZ/@@download/ENCFF650ZUZ.bam mm10 released low read length, low read depth ENCFF011HEU bam unfiltered alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOU, ENCFF018NEO 1262481092 ENCODE Processing Pipeline ea66c7176dd3ff2d198a68388417f6fa https://www.encodeproject.org/files/ENCFF011HEU/@@download/ENCFF011HEU.bam mm10 released low read length, low read depth ENCFF810IHX bam alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOP, ENCFF018NEO 578158365 ENCODE Processing Pipeline 4b261830a5a2bfcadc94773d2867087d https://www.encodeproject.org/files/ENCFF810IHX/@@download/ENCFF810IHX.bam mm10 released low read length, low read depth ENCFF217RGM bam alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOU, ENCFF018NEO 783136963 ENCODE Processing Pipeline 3a917e8c77966dffac6d2507b6a10eb2 https://www.encodeproject.org/files/ENCFF217RGM/@@download/ENCFF217RGM.bam mm10 released low read length, low read depth ENCFF379PXJ bed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF217RGM, ENCFF507BQX 646291 ENCODE Processing Pipeline 6dfe175d6e9b8b1024cff7a53eda515c https://www.encodeproject.org/files/ENCFF379PXJ/@@download/ENCFF379PXJ.bed.gz mm10 released low read length, low read depth ENCFF604INN bed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF810IHX, ENCFF858PPY 700965 ENCODE Processing Pipeline 6ba0e98c8bf03f3e0dbb5233829ec89a https://www.encodeproject.org/files/ENCFF604INN/@@download/ENCFF604INN.bed.gz mm10 released low read length, low read depth ENCFF971ZRZ bed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF217RGM, ENCFF507BQX, ENCFF810IHX, ENCFF858PPY 839040 ENCODE Processing Pipeline f8c61ba05157907f5fc68c4559bedffe https://www.encodeproject.org/files/ENCFF971ZRZ/@@download/ENCFF971ZRZ.bed.gz mm10 released low read length, low read depth ENCFF969GAM bigBed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF379PXJ 1690839 ENCODE Processing Pipeline ca0bec173bbda6a292f354a0b09f66a8 https://www.encodeproject.org/files/ENCFF969GAM/@@download/ENCFF969GAM.bigBed mm10 released low read length, low read depth ENCFF254NBL bigBed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF604INN 1834746 ENCODE Processing Pipeline 5f615a6d54243006cc0fcca3a40474b4 https://www.encodeproject.org/files/ENCFF254NBL/@@download/ENCFF254NBL.bigBed mm10 released low read length, low read depth ENCFF978DXE bigBed narrowPeak peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF971ZRZ 2071002 ENCODE Processing Pipeline 7170549d1a9ddd9344d7380eef29639e https://www.encodeproject.org/files/ENCFF978DXE/@@download/ENCFF978DXE.bigBed mm10 released low read length, low read depth ENCFF723DZY bigWig signal p-value ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF217RGM, ENCFF507BQX 393825675 ENCODE Processing Pipeline 39396bd1f80f94c44b071a9a9d58d058 https://www.encodeproject.org/files/ENCFF723DZY/@@download/ENCFF723DZY.bigWig mm10 released low read length, low read depth ENCFF397XVX bigWig signal p-value ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF810IHX, ENCFF858PPY 311704591 ENCODE Processing Pipeline 437f9f122b51c90f70067c9a53d4101c https://www.encodeproject.org/files/ENCFF397XVX/@@download/ENCFF397XVX.bigWig mm10 released low read length, low read depth ENCFF433AQS bigWig signal p-value ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF217RGM, ENCFF507BQX, ENCFF810IHX, ENCFF858PPY 572914330 ENCODE Processing Pipeline dea6974ed918766d86bffad5c2205565 https://www.encodeproject.org/files/ENCFF433AQS/@@download/ENCFF433AQS.bigWig mm10 released low read length, low read depth ENCFF933IMH bigWig fold change over control ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF217RGM, ENCFF507BQX 373074440 ENCODE Processing Pipeline 25e054e5df2e0e28368d5df8c132e2cb https://www.encodeproject.org/files/ENCFF933IMH/@@download/ENCFF933IMH.bigWig mm10 released low read length, low read depth ENCFF379BJI bigWig fold change over control ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF810IHX, ENCFF858PPY 280360468 ENCODE Processing Pipeline b4c66b79d53d661e60ad17c1976046d6 https://www.encodeproject.org/files/ENCFF379BJI/@@download/ENCFF379BJI.bigWig mm10 released low read length, low read depth ENCFF224IHW bigWig fold change over control ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF217RGM, ENCFF507BQX, ENCFF810IHX, ENCFF858PPY 614819047 ENCODE Processing Pipeline 404b04ca3bb13f450025e07bf98cf38a https://www.encodeproject.org/files/ENCFF224IHW/@@download/ENCFF224IHW.bigWig mm10 released low read length, low read depth ENCFF292KKE bed narrowPeak replicated peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF379PXJ, ENCFF604INN, ENCFF971ZRZ 513411 ENCODE Processing Pipeline 343176eacf59e21aef72acde272c3394 https://www.encodeproject.org/files/ENCFF292KKE/@@download/ENCFF292KKE.bed.gz mm10 released low read length, low read depth ENCFF392SVX bigBed narrowPeak replicated peaks ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF292KKE 1378637 ENCODE Processing Pipeline 1a9599306ab97dbd802317954ee45ab5 https://www.encodeproject.org/files/ENCFF392SVX/@@download/ENCFF392SVX.bigBed mm10 released low read length, low read depth ENCFF001MXI bam alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001MXK 578244941 Michael Snyder, Stanford f96909a6df02e159a3169b83707cce46 https://www.encodeproject.org/files/ENCFF001MXI/@@download/ENCFF001MXI.bam mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MXJ bigBed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHC 297233 Michael Snyder, Stanford ebb71c62361254b13c091b8e61920394 https://www.encodeproject.org/files/ENCFF001MXJ/@@download/ENCFF001MXJ.bigBed mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MXK fastq reads ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1041646488 Michael Snyder, Stanford 77d5eb46f461d7e3baa7c6315234c9d2 https://www.encodeproject.org/files/ENCFF001MXK/@@download/ENCFF001MXK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NNN/ released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MXM fastq reads ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1302572478 Michael Snyder, Stanford 5525bc33a46549a1af480f622715fd2f https://www.encodeproject.org/files/ENCFF001MXM/@@download/ENCFF001MXM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NNP/ released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MXO bigWig signal ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MXI, ENCFF001MXP 264203444 Michael Snyder, Stanford 36fde4ccb116f1f7a9f0ed7ffebc82bf https://www.encodeproject.org/files/ENCFF001MXO/@@download/ENCFF001MXO.bigWig mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001MXP bam alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001MXM 702853339 Michael Snyder, Stanford 666b7524a06dff43fa4fda296f7b7773 https://www.encodeproject.org/files/ENCFF001MXP/@@download/ENCFF001MXP.bam mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001YHC bed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001MXI, ENCFF001MXP 81957 Michael Snyder, Stanford 796765119639deb8aba06c833008039d https://www.encodeproject.org/files/ENCFF001YHC/@@download/ENCFF001YHC.bed.gz mm9 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF171SYL bam unfiltered alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MXM, ENCFF018NEO 1469590100 ENCODE Processing Pipeline 45549ce23c96cdca9c2cde7e69fc3ec0 https://www.encodeproject.org/files/ENCFF171SYL/@@download/ENCFF171SYL.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF139HUY bam unfiltered alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MXK, ENCFF018NEO 1179133329 ENCODE Processing Pipeline 94f0ab5c771245cd7fdadb82944ebb5f https://www.encodeproject.org/files/ENCFF139HUY/@@download/ENCFF139HUY.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF226BOO bam alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MXK, ENCFF018NEO 835466111 ENCODE Processing Pipeline 22572120e64acb895e03084e52ff9ee5 https://www.encodeproject.org/files/ENCFF226BOO/@@download/ENCFF226BOO.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF955EHC bam alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MXM, ENCFF018NEO 1038772884 ENCODE Processing Pipeline 7d3339ec85f396aa2e42c841915fb1ce https://www.encodeproject.org/files/ENCFF955EHC/@@download/ENCFF955EHC.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF087THQ bed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF074LDJ, ENCFF226BOO, ENCFF966YUS 1730351 ENCODE Processing Pipeline 4517e9e399b4ddfc9212a43005921936 https://www.encodeproject.org/files/ENCFF087THQ/@@download/ENCFF087THQ.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF715NVO bed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF074LDJ, ENCFF955EHC, ENCFF966YUS 2108811 ENCODE Processing Pipeline bfa4988e52f6c4ffd6bffd00a73012d7 https://www.encodeproject.org/files/ENCFF715NVO/@@download/ENCFF715NVO.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF171TEK bigBed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF284QUZ 3752702 ENCODE Processing Pipeline 027c923ba42e9fa140a52f157f501a91 https://www.encodeproject.org/files/ENCFF171TEK/@@download/ENCFF171TEK.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF338YKT bigBed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF087THQ 4321966 ENCODE Processing Pipeline f52b9e0de4137ebff7caf93ef2d6021a https://www.encodeproject.org/files/ENCFF338YKT/@@download/ENCFF338YKT.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF284QUZ bed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF074LDJ, ENCFF226BOO, ENCFF955EHC, ENCFF966YUS 1547724 ENCODE Processing Pipeline 275656849c9b32f650e35e7301896ed9 https://www.encodeproject.org/files/ENCFF284QUZ/@@download/ENCFF284QUZ.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF948GFQ bigBed narrowPeak peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF715NVO 5031800 ENCODE Processing Pipeline 7a46877e688b9cd34ec2ebba3072a8b0 https://www.encodeproject.org/files/ENCFF948GFQ/@@download/ENCFF948GFQ.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF998DIO bigWig signal p-value ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF074LDJ, ENCFF226BOO, ENCFF966YUS 446423852 ENCODE Processing Pipeline 92a7ad0ae76f1d4159c4b25ea7c42f71 https://www.encodeproject.org/files/ENCFF998DIO/@@download/ENCFF998DIO.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF304CHB bigWig signal p-value ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF074LDJ, ENCFF955EHC, ENCFF966YUS 460242406 ENCODE Processing Pipeline e8d65a1fb8217889fd060d7d1aa1c38d https://www.encodeproject.org/files/ENCFF304CHB/@@download/ENCFF304CHB.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF584KPF bigWig signal p-value ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF074LDJ, ENCFF226BOO, ENCFF955EHC, ENCFF966YUS 624454398 ENCODE Processing Pipeline c0808e00b8aaa8a27724229988d7bf2e https://www.encodeproject.org/files/ENCFF584KPF/@@download/ENCFF584KPF.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF968MDP bigWig fold change over control ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF074LDJ, ENCFF226BOO, ENCFF966YUS 438813967 ENCODE Processing Pipeline 25ebeb64227a314f32b656e7e45132d1 https://www.encodeproject.org/files/ENCFF968MDP/@@download/ENCFF968MDP.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF356YQL bigWig fold change over control ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF074LDJ, ENCFF955EHC, ENCFF966YUS 494941036 ENCODE Processing Pipeline eb7fae1b54f1917b6727337e605f5594 https://www.encodeproject.org/files/ENCFF356YQL/@@download/ENCFF356YQL.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF993SYN bigWig fold change over control ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF074LDJ, ENCFF226BOO, ENCFF955EHC, ENCFF966YUS 761617005 ENCODE Processing Pipeline 3a8f7fb155091a451b5d4298d1e67c9b https://www.encodeproject.org/files/ENCFF993SYN/@@download/ENCFF993SYN.bigWig mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF440FYE bed narrowPeak replicated peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF087THQ, ENCFF284QUZ, ENCFF715NVO 1184795 ENCODE Processing Pipeline 2572151d59225662b22ec5390fb48773 https://www.encodeproject.org/files/ENCFF440FYE/@@download/ENCFF440FYE.bed.gz mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF587VJG bigBed narrowPeak replicated peaks ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF440FYE 2440010 ENCODE Processing Pipeline f0f63bda4a86a58c73182eceb38e5475 https://www.encodeproject.org/files/ENCFF587VJG/@@download/ENCFF587VJG.bigBed mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NNN fastq reads ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1269638131 Michael Snyder, Stanford 9fd24411e480bc08b657585d6f59f519 https://www.encodeproject.org/files/ENCFF001NNN/@@download/ENCFF001NNN.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NNR bigWig signal ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NNX 337948373 Michael Snyder, Stanford 0c788c4c1a3bdfe50e1f01084287eb6b https://www.encodeproject.org/files/ENCFF001NNR/@@download/ENCFF001NNR.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NNX bam alignments ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NNN 955912982 Michael Snyder, Stanford 9ed316c3288be7a3b74ece734db5e152 https://www.encodeproject.org/files/ENCFF001NNX/@@download/ENCFF001NNX.bam mm9 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001NNP fastq reads ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1033176802 Michael Snyder, Stanford c514504604eff5cfe025b36b3926dad5 https://www.encodeproject.org/files/ENCFF001NNP/@@download/ENCFF001NNP.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF074LDJ bam alignments ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NNP, ENCFF018NEO 547688744 ENCODE Processing Pipeline d479a97cc9bd5fff732a1a6f79c853df https://www.encodeproject.org/files/ENCFF074LDJ/@@download/ENCFF074LDJ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF966YUS bam alignments ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NNN, ENCFF018NEO 756319187 ENCODE Processing Pipeline 07e77a62fa09a9c6b0f83581d0fd02ec https://www.encodeproject.org/files/ENCFF966YUS/@@download/ENCFF966YUS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF196DMU bam unfiltered alignments ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NNP, ENCFF018NEO 1099886928 ENCODE Processing Pipeline a1d70ed3970f651ed6140595bd4cfff4 https://www.encodeproject.org/files/ENCFF196DMU/@@download/ENCFF196DMU.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF938WHJ bam unfiltered alignments ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NNN, ENCFF018NEO 1354474958 ENCODE Processing Pipeline d97dd18c8e06101d0d59be7e0040f5eb https://www.encodeproject.org/files/ENCFF938WHJ/@@download/ENCFF938WHJ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF056XWI fastq reads ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 3 50 single-ended 1422698342 Bing Ren, UCSD b7d93dcbd836d520a5909d1be9933298 SRA:SRR4235623 https://www.encodeproject.org/files/ENCFF056XWI/@@download/ENCFF056XWI.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF653IHD fastq reads ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2809300668 Bing Ren, UCSD 04d3f8361270965eeccc49f0153ea931 SRA:SRR4235624 https://www.encodeproject.org/files/ENCFF653IHD/@@download/ENCFF653IHD.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF542IKP fastq reads ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 2 50 single-ended 1129183391 Bing Ren, UCSD 0bae68f231e822a9fc45ae84609a823f SRA:SRR4235625 https://www.encodeproject.org/files/ENCFF542IKP/@@download/ENCFF542IKP.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF551ENZ fastq reads ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1902149638 Bing Ren, UCSD ad7e1e03b228034eba8df64daf93ca84 SRA:SRR4235626 https://www.encodeproject.org/files/ENCFF551ENZ/@@download/ENCFF551ENZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF024PVD/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF556MTV fastq reads ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 2776512092 Bing Ren, UCSD 981de0863c58c2be741a418fd0eeebc3 SRA:SRR4235627 https://www.encodeproject.org/files/ENCFF556MTV/@@download/ENCFF556MTV.fastq.gz Illumina HiSeq 4000 /files/ENCFF024PVD/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF605ZKB bam unfiltered alignments ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF551ENZ, ENCFF556MTV 5267987700 ENCODE Processing Pipeline fdcc105ae5a051c92fbadd147369e134 https://www.encodeproject.org/files/ENCFF605ZKB/@@download/ENCFF605ZKB.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF540SBR bam unfiltered alignments ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF056XWI, ENCFF542IKP, ENCFF653IHD 5799763804 ENCODE Processing Pipeline c8a5246416e3bc43446f5dff5344b173 https://www.encodeproject.org/files/ENCFF540SBR/@@download/ENCFF540SBR.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF790CKS bam alignments ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF056XWI, ENCFF542IKP, ENCFF653IHD 1712384147 ENCODE Processing Pipeline e3661af50ed62611efb835fcdbbf33c4 https://www.encodeproject.org/files/ENCFF790CKS/@@download/ENCFF790CKS.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF597TOC bam alignments ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF551ENZ, ENCFF556MTV 1887653487 ENCODE Processing Pipeline 00f4ab54c542fad8a325d0963d2d293a https://www.encodeproject.org/files/ENCFF597TOC/@@download/ENCFF597TOC.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF308NXY bigBed narrowPeak peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF761AAB 4674600 ENCODE Processing Pipeline 9280f4cd3deacc4cc27bc5844f230f77 https://www.encodeproject.org/files/ENCFF308NXY/@@download/ENCFF308NXY.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF193JII bigBed narrowPeak peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF003LTJ 4653123 ENCODE Processing Pipeline ccd926f0c7952b731678f81278873a78 https://www.encodeproject.org/files/ENCFF193JII/@@download/ENCFF193JII.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF450JIE bed narrowPeak peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF597TOC, ENCFF790CKS, ENCFF869IME, ENCFF940GMW 2640097 ENCODE Processing Pipeline 675343a243fd9462edc630825364bc22 https://www.encodeproject.org/files/ENCFF450JIE/@@download/ENCFF450JIE.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF761AAB bed narrowPeak peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF597TOC, ENCFF940GMW 1966414 ENCODE Processing Pipeline 6e9b37b623bd8bd4c7e6d61fc466bd03 https://www.encodeproject.org/files/ENCFF761AAB/@@download/ENCFF761AAB.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF236CJO bigBed narrowPeak peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF450JIE 6112683 ENCODE Processing Pipeline 0e4d6f3b6f8fcbc58260fa1c99201ac5 https://www.encodeproject.org/files/ENCFF236CJO/@@download/ENCFF236CJO.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF540YYF bigWig signal p-value ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF597TOC, ENCFF940GMW 727233113 ENCODE Processing Pipeline 16b18cf85a9439186b5bad6ef3fbc539 https://www.encodeproject.org/files/ENCFF540YYF/@@download/ENCFF540YYF.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF003LTJ bed narrowPeak peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF790CKS, ENCFF869IME 1915948 ENCODE Processing Pipeline 3f9760bb0538dde0365005b8e537e824 https://www.encodeproject.org/files/ENCFF003LTJ/@@download/ENCFF003LTJ.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF107RDV bigWig signal p-value ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF790CKS, ENCFF869IME 729576805 ENCODE Processing Pipeline 7f039258d9cc853e1459f6485b763506 https://www.encodeproject.org/files/ENCFF107RDV/@@download/ENCFF107RDV.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF141EFC bigWig fold change over control ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF790CKS, ENCFF869IME 804282274 ENCODE Processing Pipeline ff961b63ba0f34fafc89fc811817b948 https://www.encodeproject.org/files/ENCFF141EFC/@@download/ENCFF141EFC.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF056HLF bigWig signal p-value ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF597TOC, ENCFF790CKS, ENCFF869IME, ENCFF940GMW 1249607020 ENCODE Processing Pipeline cea0796e8ca5f19f6b0ddac5fc1af3b0 https://www.encodeproject.org/files/ENCFF056HLF/@@download/ENCFF056HLF.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF622FKZ bigWig fold change over control ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF597TOC, ENCFF940GMW 816454521 ENCODE Processing Pipeline f3eed0dfed2c863c6373c23d86de618e https://www.encodeproject.org/files/ENCFF622FKZ/@@download/ENCFF622FKZ.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF798NZC bigWig fold change over control ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF597TOC, ENCFF790CKS, ENCFF869IME, ENCFF940GMW 1355378047 ENCODE Processing Pipeline 7bd2dc554bf7fbcef1696f2a47f72d11 https://www.encodeproject.org/files/ENCFF798NZC/@@download/ENCFF798NZC.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF310NGB bed narrowPeak replicated peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF003LTJ, ENCFF450JIE, ENCFF761AAB 1319592 ENCODE Processing Pipeline 813a4368d3961a92a4e4548535ba4e6e https://www.encodeproject.org/files/ENCFF310NGB/@@download/ENCFF310NGB.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF157BTT bigBed narrowPeak replicated peaks ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF310NGB 2565150 ENCODE Processing Pipeline 962c07995cf2667469fa90d8d806169f https://www.encodeproject.org/files/ENCFF157BTT/@@download/ENCFF157BTT.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF429UIY fastq reads ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 2341724432 Bing Ren, UCSD 90c6a84c24cb215d30b8f640ff0e14b3 SRA:SRR3652444 https://www.encodeproject.org/files/ENCFF429UIY/@@download/ENCFF429UIY.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF518EIZ fastq reads ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 3 50 single-ended 2462741303 Bing Ren, UCSD c2009b20264647a0ade3472ed8b06c06 SRA:SRR3652445 https://www.encodeproject.org/files/ENCFF518EIZ/@@download/ENCFF518EIZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF482JNU/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF664UMG fastq reads ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1849436024 Bing Ren, UCSD 00f4a23b2906ccc6f28645c07c48e85b SRA:SRR3652448 https://www.encodeproject.org/files/ENCFF664UMG/@@download/ENCFF664UMG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF044SMI fastq reads ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 36 single-ended 607000873 Bing Ren, UCSD 306b5be3cf725fce92a9e39d506c8dc4 SRA:SRR3652449 https://www.encodeproject.org/files/ENCFF044SMI/@@download/ENCFF044SMI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXW/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF572IRL fastq reads ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 36 single-ended 3062143493 Bing Ren, UCSD c28bf8b5c236547fac35a254a8144724 SRA:SRR3652446 https://www.encodeproject.org/files/ENCFF572IRL/@@download/ENCFF572IRL.fastq.gz Illumina HiSeq 2500 /files/ENCFF249RWY/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF353UMW bam alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF044SMI, ENCFF664UMG, ENCFF806TVZ 1095135745 ENCODE Processing Pipeline 5656c23266aa934bd1eaed93555eabba https://www.encodeproject.org/files/ENCFF353UMW/@@download/ENCFF353UMW.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF048NRC fastq reads ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 4 50 single-ended 1575251050 Bing Ren, UCSD ae760ea601a9b7217ba53aefdc09f9f9 SRA:SRR3652447 https://www.encodeproject.org/files/ENCFF048NRC/@@download/ENCFF048NRC.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/, /files/ENCFF249RWY/, /files/ENCFF482JNU/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF830LQJ bam alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF048NRC, ENCFF429UIY, ENCFF518EIZ, ENCFF572IRL, ENCFF806TVZ 827372517 ENCODE Processing Pipeline 868038042360b18e83a8e48fe60b0979 https://www.encodeproject.org/files/ENCFF830LQJ/@@download/ENCFF830LQJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF248SPQ bigWig signal p-value ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF578PIN, ENCFF830LQJ 484999965 ENCODE Processing Pipeline bb8cfb215ae8a32ed2218fcbea9b7f51 https://www.encodeproject.org/files/ENCFF248SPQ/@@download/ENCFF248SPQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF067JQX bed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF578PIN, ENCFF830LQJ 1399221 ENCODE Processing Pipeline e350118651433821c6729d22b70c8bb2 https://www.encodeproject.org/files/ENCFF067JQX/@@download/ENCFF067JQX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF877YCS bigBed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF995UMZ 2145681 ENCODE Processing Pipeline f9c9b8189acc5a8e2e2186ce9743ef12 https://www.encodeproject.org/files/ENCFF877YCS/@@download/ENCFF877YCS.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF905OYF bigBed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF067JQX 2773941 ENCODE Processing Pipeline 943279ac2a97b37bb493f812d28e4d52 https://www.encodeproject.org/files/ENCFF905OYF/@@download/ENCFF905OYF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF581JVV bed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF353UMW, ENCFF439PVF, ENCFF578PIN, ENCFF830LQJ 729526 ENCODE Processing Pipeline 9cf889a583fb6fb54a5f040752f8bcf2 https://www.encodeproject.org/files/ENCFF581JVV/@@download/ENCFF581JVV.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF995UMZ bed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF353UMW, ENCFF439PVF, ENCFF578PIN 965282 ENCODE Processing Pipeline 274302833b10b2150153bbec57a4c4e5 https://www.encodeproject.org/files/ENCFF995UMZ/@@download/ENCFF995UMZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF357RQP bigWig signal p-value ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF353UMW, ENCFF439PVF, ENCFF578PIN 498989430 ENCODE Processing Pipeline 5a4f691e311c7ea8ab45b478ca1b2972 https://www.encodeproject.org/files/ENCFF357RQP/@@download/ENCFF357RQP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF816HBX bigBed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF581JVV 1584737 ENCODE Processing Pipeline 48717bb35394322f20d7a115b5d49a6a https://www.encodeproject.org/files/ENCFF816HBX/@@download/ENCFF816HBX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF102PSW bigWig signal p-value ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF353UMW, ENCFF439PVF, ENCFF578PIN, ENCFF830LQJ 613664881 ENCODE Processing Pipeline cc39021d44a4c72130577b859ac135f0 https://www.encodeproject.org/files/ENCFF102PSW/@@download/ENCFF102PSW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF600WVG bed narrowPeak replicated peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF067JQX, ENCFF581JVV, ENCFF995UMZ 423953 ENCODE Processing Pipeline 80b5f7376fbf95f80071c1b75dbf0a99 https://www.encodeproject.org/files/ENCFF600WVG/@@download/ENCFF600WVG.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF309RXK bigBed narrowPeak replicated peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF600WVG 901050 ENCODE Processing Pipeline 0810bc7c6313fc3999f6afd2d4cf24bd https://www.encodeproject.org/files/ENCFF309RXK/@@download/ENCFF309RXK.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF043VSU bigWig fold change over control ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF353UMW, ENCFF439PVF, ENCFF578PIN 496566197 ENCODE Processing Pipeline aec0cb9ef1db49eaf4d11a151dd88c8a https://www.encodeproject.org/files/ENCFF043VSU/@@download/ENCFF043VSU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF344DCJ bigWig fold change over control ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF353UMW, ENCFF439PVF, ENCFF578PIN, ENCFF830LQJ 724695278 ENCODE Processing Pipeline c089fb774ede68d5f9875a3a6d2f4bdd https://www.encodeproject.org/files/ENCFF344DCJ/@@download/ENCFF344DCJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF547SRN bigWig fold change over control ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF578PIN, ENCFF830LQJ 382084013 ENCODE Processing Pipeline 5821b933403e2ecc2b0b4edfc0878638 https://www.encodeproject.org/files/ENCFF547SRN/@@download/ENCFF547SRN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF750ZLV bam unfiltered alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF044SMI, ENCFF664UMG 3049885331 ENCODE Processing Pipeline 0e450b4e1d9ccdc61767fa8986d95d19 https://www.encodeproject.org/files/ENCFF750ZLV/@@download/ENCFF750ZLV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF763JDV bam alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF044SMI, ENCFF664UMG 1094487034 ENCODE Processing Pipeline fb656757cf2bb48fe635c67f31bdb5f4 https://www.encodeproject.org/files/ENCFF763JDV/@@download/ENCFF763JDV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF435ANT bam unfiltered alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF048NRC, ENCFF429UIY, ENCFF518EIZ, ENCFF572IRL 8844998680 ENCODE Processing Pipeline f461fdceb3ae05450159916f58e67f64 https://www.encodeproject.org/files/ENCFF435ANT/@@download/ENCFF435ANT.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF308XTN bam alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF048NRC, ENCFF429UIY, ENCFF518EIZ, ENCFF572IRL 617533100 ENCODE Processing Pipeline 1acdf7ef28a9b4db3129cf9f55658077 https://www.encodeproject.org/files/ENCFF308XTN/@@download/ENCFF308XTN.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF071OQX bed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF308XTN, ENCFF397HOQ, ENCFF749WCS 972986 ENCODE Processing Pipeline 1bec3116bd17643f28eec7a7f47461fe https://www.encodeproject.org/files/ENCFF071OQX/@@download/ENCFF071OQX.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF179EKA bigBed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF210QKV 2234631 ENCODE Processing Pipeline 2df01830b31c5fa30e379296c9109898 https://www.encodeproject.org/files/ENCFF179EKA/@@download/ENCFF179EKA.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF562EEM bigBed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF071OQX 2124249 ENCODE Processing Pipeline 5a2927538745a5150c387e4176bb0269 https://www.encodeproject.org/files/ENCFF562EEM/@@download/ENCFF562EEM.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF225ZKM bigWig signal p-value ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF749WCS, ENCFF763JDV 499642489 ENCODE Processing Pipeline 6b9cb4eebd059e397d5e63596f17059c https://www.encodeproject.org/files/ENCFF225ZKM/@@download/ENCFF225ZKM.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF210QKV bed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF749WCS, ENCFF763JDV 1025224 ENCODE Processing Pipeline 25bee28496833453691fb6a7e63a0ef2 https://www.encodeproject.org/files/ENCFF210QKV/@@download/ENCFF210QKV.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF009USH bigBed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF536EUP 1455769 ENCODE Processing Pipeline b7df4ca1f9c5031d77d703c6aa6e8500 https://www.encodeproject.org/files/ENCFF009USH/@@download/ENCFF009USH.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF536EUP bed narrowPeak peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF308XTN, ENCFF397HOQ, ENCFF749WCS, ENCFF763JDV 649104 ENCODE Processing Pipeline dc0f2a0cf4c99f4920e568fc7a1f0d92 https://www.encodeproject.org/files/ENCFF536EUP/@@download/ENCFF536EUP.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF445PVE bigWig signal p-value ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF308XTN, ENCFF397HOQ, ENCFF749WCS 472348150 ENCODE Processing Pipeline 3283b8ac654495065fb01992a5454b92 https://www.encodeproject.org/files/ENCFF445PVE/@@download/ENCFF445PVE.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF199KUC bigWig fold change over control ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF397HOQ, ENCFF749WCS, ENCFF763JDV 509033049 ENCODE Processing Pipeline dbe275105d005ff953c172c6d26017bb https://www.encodeproject.org/files/ENCFF199KUC/@@download/ENCFF199KUC.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF136AJD bigWig fold change over control ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF308XTN, ENCFF397HOQ, ENCFF749WCS 365432502 ENCODE Processing Pipeline 58fadda9701a125a08c20721daf32798 https://www.encodeproject.org/files/ENCFF136AJD/@@download/ENCFF136AJD.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF117OAO bigWig signal p-value ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF308XTN, ENCFF397HOQ, ENCFF749WCS, ENCFF763JDV 597259102 ENCODE Processing Pipeline 95dba0264ad10e551fbfb30bfb04ef25 https://www.encodeproject.org/files/ENCFF117OAO/@@download/ENCFF117OAO.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF390PNF bigWig fold change over control ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF308XTN, ENCFF397HOQ, ENCFF749WCS, ENCFF763JDV 702805399 ENCODE Processing Pipeline 944ed6c04ac5430d801efbfb3b277c85 https://www.encodeproject.org/files/ENCFF390PNF/@@download/ENCFF390PNF.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF864AIL bed narrowPeak replicated peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF071OQX, ENCFF210QKV, ENCFF536EUP 376001 ENCODE Processing Pipeline 578e969ec62727187f0164d368de1073 https://www.encodeproject.org/files/ENCFF864AIL/@@download/ENCFF864AIL.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF966PBT bigBed narrowPeak replicated peaks ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF864AIL 826855 ENCODE Processing Pipeline eb18b2fd85046967bfeae49622f75c77 https://www.encodeproject.org/files/ENCFF966PBT/@@download/ENCFF966PBT.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001NFL bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NGC 303909820 Michael Snyder, Stanford a6cfc568cea8c4224f858e0981a89fd3 https://www.encodeproject.org/files/ENCFF001NFL/@@download/ENCFF001NFL.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NFM bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NGO 299309498 Michael Snyder, Stanford dfa62ad0d5a1fc72acd71c1116dfda47 https://www.encodeproject.org/files/ENCFF001NFM/@@download/ENCFF001NFM.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NFN bigBed narrowPeak peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHU 1029843 Michael Snyder, Stanford e421aac28339f6e434402ffa90919a0c https://www.encodeproject.org/files/ENCFF001NFN/@@download/ENCFF001NFN.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NFR bigWig signal ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFL, ENCFF001NFM 255078538 Michael Snyder, Stanford 84b40f360e4a058311bf97b404627745 https://www.encodeproject.org/files/ENCFF001NFR/@@download/ENCFF001NFR.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NGC fastq reads ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1096763904 Michael Snyder, Stanford 251314891177bc2b02cc871f1679e356 https://www.encodeproject.org/files/ENCFF001NGC/@@download/ENCFF001NGC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001NGO fastq reads ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 995567119 Michael Snyder, Stanford e8ffa801aab6d94b79165263aea8087d https://www.encodeproject.org/files/ENCFF001NGO/@@download/ENCFF001NGO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF001YHU bed narrowPeak peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFL, ENCFF001NFM 413695 Michael Snyder, Stanford ae1e2ce02d8df7f7aab72a6f062b850c https://www.encodeproject.org/files/ENCFF001YHU/@@download/ENCFF001YHU.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF726ILJ bam unfiltered alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGO, ENCFF018NEO 1102128563 ENCODE Processing Pipeline ed6e020345cb40095debe993af1945f0 https://www.encodeproject.org/files/ENCFF726ILJ/@@download/ENCFF726ILJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF644VXF bam unfiltered alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGC, ENCFF018NEO 1234250654 ENCODE Processing Pipeline 0b09ed6f6a54116e95fd421e98767af4 https://www.encodeproject.org/files/ENCFF644VXF/@@download/ENCFF644VXF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF271SRD bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGO, ENCFF018NEO 604624795 ENCODE Processing Pipeline 8354f6ab2ca30740b13479953b9a2151 https://www.encodeproject.org/files/ENCFF271SRD/@@download/ENCFF271SRD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF006JXP bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGC, ENCFF018NEO 667604428 ENCODE Processing Pipeline 3698b803fc362be8ebd058fdee8c483f https://www.encodeproject.org/files/ENCFF006JXP/@@download/ENCFF006JXP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF940MBK bigWig signal p-value ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF006JXP, ENCFF339ZWC 242379023 ENCODE Processing Pipeline e39dac99d27eb8630510199a77c54f1f https://www.encodeproject.org/files/ENCFF940MBK/@@download/ENCFF940MBK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF295ZFU bigWig signal p-value ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF006JXP, ENCFF271SRD, ENCFF339ZWC 228262716 ENCODE Processing Pipeline d5bbf39e4ebd305ae8087e13afe9ed8d https://www.encodeproject.org/files/ENCFF295ZFU/@@download/ENCFF295ZFU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF534KNL bigWig fold change over control ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF006JXP, ENCFF339ZWC 239502715 ENCODE Processing Pipeline 79c8ec81b06b89e48d2f9c381ae802b8 https://www.encodeproject.org/files/ENCFF534KNL/@@download/ENCFF534KNL.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF453LPG bigWig signal p-value ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF271SRD, ENCFF339ZWC 235792301 ENCODE Processing Pipeline 0e9c2038e1d9f9799b324a4eb7703356 https://www.encodeproject.org/files/ENCFF453LPG/@@download/ENCFF453LPG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF962BGJ bed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF271SRD, ENCFF339ZWC 5250447 ENCODE Processing Pipeline 3f6657835ee3d9af684b4a175a500d5d https://www.encodeproject.org/files/ENCFF962BGJ/@@download/ENCFF962BGJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF259VHD bigWig fold change over control ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF271SRD, ENCFF339ZWC 216919763 ENCODE Processing Pipeline efd66d235a99e5eab38b1df1a5c39571 https://www.encodeproject.org/files/ENCFF259VHD/@@download/ENCFF259VHD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF562UOS bigWig fold change over control ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF006JXP, ENCFF271SRD, ENCFF339ZWC 386697703 ENCODE Processing Pipeline daabd35f095f8b93526350882ed6c94a https://www.encodeproject.org/files/ENCFF562UOS/@@download/ENCFF562UOS.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF160KXR bed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF006JXP, ENCFF339ZWC 5159168 ENCODE Processing Pipeline 329a156c8f153222595ab105f5ef672e https://www.encodeproject.org/files/ENCFF160KXR/@@download/ENCFF160KXR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF540OBG bigBed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF160KXR 12669617 ENCODE Processing Pipeline 3f50a5d7087665f96643b28a20c36ab2 https://www.encodeproject.org/files/ENCFF540OBG/@@download/ENCFF540OBG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF434IOC bed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF006JXP, ENCFF271SRD, ENCFF339ZWC 5828986 ENCODE Processing Pipeline b87e050dd66fe799cb84f45f696567de https://www.encodeproject.org/files/ENCFF434IOC/@@download/ENCFF434IOC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF093QJN bigBed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF962BGJ 12611757 ENCODE Processing Pipeline d0e64f1d6b17863a4816399ac045ff6e https://www.encodeproject.org/files/ENCFF093QJN/@@download/ENCFF093QJN.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF207USO bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF994LFX 1090366 ENCODE Processing Pipeline 10d76504f09478a02de4a3552113312f https://www.encodeproject.org/files/ENCFF207USO/@@download/ENCFF207USO.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF474FPJ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF434IOC 12952178 ENCODE Processing Pipeline daa751e13a11fbab492d4442e7751f12 https://www.encodeproject.org/files/ENCFF474FPJ/@@download/ENCFF474FPJ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF994LFX bed narrowPeak conservative idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF160KXR, ENCFF434IOC, ENCFF547MET, ENCFF962BGJ 502052 ENCODE Processing Pipeline 11c0cf1314b04c7df13c307c8a4a730a https://www.encodeproject.org/files/ENCFF994LFX/@@download/ENCFF994LFX.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF130OBI bed narrowPeak optimal idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF160KXR, ENCFF434IOC, ENCFF547MET, ENCFF962BGJ 555360 ENCODE Processing Pipeline 4cdb840a799631505bd91fd35fb41252 https://www.encodeproject.org/files/ENCFF130OBI/@@download/ENCFF130OBI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF033DSA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF130OBI 1186120 ENCODE Processing Pipeline 02409b73c99c0bf1552708a53cfad2d1 https://www.encodeproject.org/files/ENCFF033DSA/@@download/ENCFF033DSA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF096XZW fastq reads ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2390211844 Bing Ren, UCSD b3045bcb41f5f6660bbb84ffc5da12f6 SRA:SRR3652435 https://www.encodeproject.org/files/ENCFF096XZW/@@download/ENCFF096XZW.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF175KSI fastq reads ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1064122617 Bing Ren, UCSD 137fa076502b8b15f97608da5793258f SRA:SRR3652436 https://www.encodeproject.org/files/ENCFF175KSI/@@download/ENCFF175KSI.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF079GEV fastq reads ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2920946279 Bing Ren, UCSD 8d0bcc0e26aae297208d5e466c301cfd SRA:SRR3652433 https://www.encodeproject.org/files/ENCFF079GEV/@@download/ENCFF079GEV.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF935ZTL fastq reads ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1012849257 Bing Ren, UCSD 1dcdd26a957c4083fffe72aa270b3ba1 SRA:SRR3652434 https://www.encodeproject.org/files/ENCFF935ZTL/@@download/ENCFF935ZTL.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF742SKL bam alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF096XZW, ENCFF175KSI, ENCFF806TVZ 2933378391 ENCODE Processing Pipeline a49bc9abe27a04494e30486c0da2cd56 https://www.encodeproject.org/files/ENCFF742SKL/@@download/ENCFF742SKL.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF965COR bam alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF079GEV, ENCFF806TVZ, ENCFF935ZTL 3351228882 ENCODE Processing Pipeline 84d928965cbfb14e7f6943c49a2a375b https://www.encodeproject.org/files/ENCFF965COR/@@download/ENCFF965COR.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF586KXW bigBed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF380KLE 2206695 ENCODE Processing Pipeline ba265311f48608bac24f7aed4e80ce8c https://www.encodeproject.org/files/ENCFF586KXW/@@download/ENCFF586KXW.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF494IUY bigBed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF131WBS 2244093 ENCODE Processing Pipeline 88bb12f78702b2b6388e5c7c712b6deb https://www.encodeproject.org/files/ENCFF494IUY/@@download/ENCFF494IUY.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF380KLE bed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF965COR 999662 ENCODE Processing Pipeline 5c15bd0cc22e1da8b2af4cd356b378b9 https://www.encodeproject.org/files/ENCFF380KLE/@@download/ENCFF380KLE.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF131WBS bed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF742SKL, ENCFF792GEI, ENCFF965COR 827753 ENCODE Processing Pipeline fdc7088534e7eb672f2dcffacb30a205 https://www.encodeproject.org/files/ENCFF131WBS/@@download/ENCFF131WBS.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF795VDN bigBed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF666ZKV 1676399 ENCODE Processing Pipeline fb50b1a7a5940374c9fc25d51f4bc951 https://www.encodeproject.org/files/ENCFF795VDN/@@download/ENCFF795VDN.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF971IOQ bigWig signal p-value ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF965COR 1234811507 ENCODE Processing Pipeline dc7e563f0c4a8a9092d575e86fc2af36 https://www.encodeproject.org/files/ENCFF971IOQ/@@download/ENCFF971IOQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF666ZKV bed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF742SKL, ENCFF792GEI 694303 ENCODE Processing Pipeline 4b94ff97767cdb7a9a61eab8b19c9a9a https://www.encodeproject.org/files/ENCFF666ZKV/@@download/ENCFF666ZKV.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF470PUG bigWig signal p-value ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF742SKL, ENCFF792GEI 920553002 ENCODE Processing Pipeline 6d590b301c5ac568e727515f7c7cb894 https://www.encodeproject.org/files/ENCFF470PUG/@@download/ENCFF470PUG.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF166IEM bigWig signal p-value ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF742SKL, ENCFF792GEI, ENCFF965COR 1600189820 ENCODE Processing Pipeline f187680146e8e08806b97f1298998d17 https://www.encodeproject.org/files/ENCFF166IEM/@@download/ENCFF166IEM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF059LBX bigWig fold change over control ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002TFZ, ENCFF742SKL, ENCFF792GEI 1243041396 ENCODE Processing Pipeline eff0b8be222a37041e148710bef6bcdc https://www.encodeproject.org/files/ENCFF059LBX/@@download/ENCFF059LBX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF361QQR bigWig fold change over control ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF002TFZ, ENCFF792GEI, ENCFF965COR 1275579046 ENCODE Processing Pipeline 938bec37f8df39e50361050d5a72b992 https://www.encodeproject.org/files/ENCFF361QQR/@@download/ENCFF361QQR.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF153PXV bigWig fold change over control ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF002TFZ, ENCFF742SKL, ENCFF792GEI, ENCFF965COR 1792631004 ENCODE Processing Pipeline 802c09cbe8531185af7ef565d1a1b23e https://www.encodeproject.org/files/ENCFF153PXV/@@download/ENCFF153PXV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF468BCC bed narrowPeak replicated peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF131WBS, ENCFF380KLE, ENCFF666ZKV 511882 ENCODE Processing Pipeline aa6cc57daf813b733f432cbf952f5079 https://www.encodeproject.org/files/ENCFF468BCC/@@download/ENCFF468BCC.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF553YKB bigBed narrowPeak replicated peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF468BCC 1131768 ENCODE Processing Pipeline 37037bdb6d54c9e4f609ab2f01ed7a0f https://www.encodeproject.org/files/ENCFF553YKB/@@download/ENCFF553YKB.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF872IPC bam unfiltered alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF079GEV, ENCFF935ZTL 4701995374 ENCODE Processing Pipeline 9a41a85a04a95be2a265753939c51756 https://www.encodeproject.org/files/ENCFF872IPC/@@download/ENCFF872IPC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF140QBN bam unfiltered alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF096XZW, ENCFF175KSI 4167457155 ENCODE Processing Pipeline 17eac2e9308d21458d678d2894e7db4a https://www.encodeproject.org/files/ENCFF140QBN/@@download/ENCFF140QBN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF926ANX bam alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF079GEV, ENCFF935ZTL 3350640055 ENCODE Processing Pipeline 57098f6faf96120e82701a4ed6dc4349 https://www.encodeproject.org/files/ENCFF926ANX/@@download/ENCFF926ANX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF460TKS bam alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF096XZW, ENCFF175KSI 2932821747 ENCODE Processing Pipeline 6f1077fe20ad02171a6bb26e12c1d4d4 https://www.encodeproject.org/files/ENCFF460TKS/@@download/ENCFF460TKS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF004VDR bed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF460TKS, ENCFF880SQD, ENCFF901RYX 690535 ENCODE Processing Pipeline 7851d10835a66dcfd7c01430d3de5187 https://www.encodeproject.org/files/ENCFF004VDR/@@download/ENCFF004VDR.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF044ERI bed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF880SQD, ENCFF926ANX 828477 ENCODE Processing Pipeline 5b368448b87eaf90737f54ea73df295a https://www.encodeproject.org/files/ENCFF044ERI/@@download/ENCFF044ERI.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF231SVX bed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF460TKS, ENCFF880SQD, ENCFF901RYX, ENCFF926ANX 922132 ENCODE Processing Pipeline d1617a933decf896c2a7e7089647d3f7 https://www.encodeproject.org/files/ENCFF231SVX/@@download/ENCFF231SVX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF084WVD bigBed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF004VDR 1670076 ENCODE Processing Pipeline 241e2354c92954122eda17a878072395 https://www.encodeproject.org/files/ENCFF084WVD/@@download/ENCFF084WVD.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF136ZJA bigBed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF044ERI 1830358 ENCODE Processing Pipeline fb84f57b7ae23ee67118afef071c3d15 https://www.encodeproject.org/files/ENCFF136ZJA/@@download/ENCFF136ZJA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF718LHG bigBed narrowPeak peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF231SVX 2501040 ENCODE Processing Pipeline f404d4fb2e236f8ef64378860304693d https://www.encodeproject.org/files/ENCFF718LHG/@@download/ENCFF718LHG.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF464DLD bigWig signal p-value ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF460TKS, ENCFF880SQD, ENCFF901RYX 1255171950 ENCODE Processing Pipeline 13aa04678025ba0acd348e4d9c33e5b0 https://www.encodeproject.org/files/ENCFF464DLD/@@download/ENCFF464DLD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF132MFX bigWig signal p-value ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF880SQD, ENCFF926ANX 967228832 ENCODE Processing Pipeline ff84271ccdd7d0180ce5e041ccfddced https://www.encodeproject.org/files/ENCFF132MFX/@@download/ENCFF132MFX.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF176TCE bigWig signal p-value ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF460TKS, ENCFF880SQD, ENCFF901RYX, ENCFF926ANX 1678742536 ENCODE Processing Pipeline d5e4fd94ba302f8d297a169755cc6bf0 https://www.encodeproject.org/files/ENCFF176TCE/@@download/ENCFF176TCE.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF837EEK bigWig fold change over control ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF460TKS, ENCFF880SQD, ENCFF901RYX 1289915683 ENCODE Processing Pipeline e20181b20fe3231adb7cd659acdff0c6 https://www.encodeproject.org/files/ENCFF837EEK/@@download/ENCFF837EEK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF723UVH bigWig fold change over control ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF880SQD, ENCFF926ANX 1072943093 ENCODE Processing Pipeline e4e66d269228b84a338f60fd520ea287 https://www.encodeproject.org/files/ENCFF723UVH/@@download/ENCFF723UVH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF848GOF bigWig fold change over control ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF460TKS, ENCFF880SQD, ENCFF901RYX, ENCFF926ANX 1784016333 ENCODE Processing Pipeline 6c474d5fbbbdd9a039c8946dbe47e2ad https://www.encodeproject.org/files/ENCFF848GOF/@@download/ENCFF848GOF.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF082ONF bed narrowPeak replicated peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF004VDR, ENCFF044ERI, ENCFF231SVX 487634 ENCODE Processing Pipeline fd154ee1ea5f5c32e1b3ff7dbd147854 https://www.encodeproject.org/files/ENCFF082ONF/@@download/ENCFF082ONF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF222CXO bigBed narrowPeak replicated peaks ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF082ONF 1075107 ENCODE Processing Pipeline 6bd054f311eaad95c311c064ec7e37e3 https://www.encodeproject.org/files/ENCFF222CXO/@@download/ENCFF222CXO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001JWE bam alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JWT 528909870 Bing Ren, UCSD 7bdc2615a6a0327a8edf78c1ad7ef7ea https://www.encodeproject.org/files/ENCFF001JWE/@@download/ENCFF001JWE.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001JWF bam alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JWS 545342270 Bing Ren, UCSD 74319a3fdba77877a25ce6ae860ee553 https://www.encodeproject.org/files/ENCFF001JWF/@@download/ENCFF001JWF.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001JWG bigBed broadPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XVR 758587 Bing Ren, UCSD 0b38b83f4f6afb44c280da7a3622e938 https://www.encodeproject.org/files/ENCFF001JWG/@@download/ENCFF001JWG.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001JWK bigWig signal ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JWE, ENCFF001JWF 54648333 Bing Ren, UCSD 27c50bbc17aa6b85f577560fe2323e69 https://www.encodeproject.org/files/ENCFF001JWK/@@download/ENCFF001JWK.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001JWS fastq reads ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 535321267 Bing Ren, UCSD 5d8aad799e1e7fdb3c3d1dd3ec034c00 https://www.encodeproject.org/files/ENCFF001JWS/@@download/ENCFF001JWS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JWV/ released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001JWT fastq reads ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 518070412 Bing Ren, UCSD 9f9fa34fdef4ac0eb448a08cc5dc1f05 https://www.encodeproject.org/files/ENCFF001JWT/@@download/ENCFF001JWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JWW/ released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001XVR bed broadPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JWE, ENCFF001JWF 502412 Bing Ren, UCSD 1aa946d07a70852b15ea97bbfad9b260 https://www.encodeproject.org/files/ENCFF001XVR/@@download/ENCFF001XVR.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF944CRM bam unfiltered alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWS, ENCFF018NEO 579223440 ENCODE Processing Pipeline 5a7ca83b3b0bdf71cf916e0ebe440e79 https://www.encodeproject.org/files/ENCFF944CRM/@@download/ENCFF944CRM.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF892TVP bam unfiltered alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWT, ENCFF018NEO 564086589 ENCODE Processing Pipeline f56e3474ec33d4e7af0ce05885f20cb8 https://www.encodeproject.org/files/ENCFF892TVP/@@download/ENCFF892TVP.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF252LJW bam alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWS, ENCFF018NEO 396647064 ENCODE Processing Pipeline 3c9cf4e63406b58f422eab9b542a439c https://www.encodeproject.org/files/ENCFF252LJW/@@download/ENCFF252LJW.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF299KHI bam alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWT, ENCFF018NEO 396196393 ENCODE Processing Pipeline ee9e49b131c1647e8befea681070827a https://www.encodeproject.org/files/ENCFF299KHI/@@download/ENCFF299KHI.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF698FKP bed narrowPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF252LJW, ENCFF299KHI, ENCFF310NCX, ENCFF758PYU 2261432 ENCODE Processing Pipeline 5c2406d2dd3d2f1fd1a82379bef23125 https://www.encodeproject.org/files/ENCFF698FKP/@@download/ENCFF698FKP.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF120XTS bigBed narrowPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF154GXN 5471485 ENCODE Processing Pipeline 9548fd8773e45e668958b419083342b2 https://www.encodeproject.org/files/ENCFF120XTS/@@download/ENCFF120XTS.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF318QYV bigWig signal p-value ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF299KHI, ENCFF310NCX, ENCFF758PYU 412712504 ENCODE Processing Pipeline f8674a64bc60eaeac5d45565ecdb52d8 https://www.encodeproject.org/files/ENCFF318QYV/@@download/ENCFF318QYV.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF299UBB bigWig fold change over control ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF299KHI, ENCFF310NCX, ENCFF758PYU 258203214 ENCODE Processing Pipeline a19c683eb82d097d5eb8d96e3c0a33dc https://www.encodeproject.org/files/ENCFF299UBB/@@download/ENCFF299UBB.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF154GXN bed narrowPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF252LJW, ENCFF310NCX, ENCFF758PYU 2045746 ENCODE Processing Pipeline 455bdebf0eec2ec141f13f9a6cc1951f https://www.encodeproject.org/files/ENCFF154GXN/@@download/ENCFF154GXN.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF707CJV bigWig signal p-value ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF252LJW, ENCFF310NCX, ENCFF758PYU 463124560 ENCODE Processing Pipeline 51f0de16df1e76d81a6f6cb870dc8f18 https://www.encodeproject.org/files/ENCFF707CJV/@@download/ENCFF707CJV.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF095YBS bigWig signal p-value ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF252LJW, ENCFF299KHI, ENCFF310NCX, ENCFF758PYU 471886777 ENCODE Processing Pipeline ac02ddf374f215fe32d4f04c336791e7 https://www.encodeproject.org/files/ENCFF095YBS/@@download/ENCFF095YBS.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF012PBY bigWig fold change over control ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF252LJW, ENCFF299KHI, ENCFF310NCX, ENCFF758PYU 413990935 ENCODE Processing Pipeline e144798fa9bb2c192bd3a910601a2b5e https://www.encodeproject.org/files/ENCFF012PBY/@@download/ENCFF012PBY.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF297TGM bed narrowPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF299KHI, ENCFF310NCX, ENCFF758PYU 2016785 ENCODE Processing Pipeline 9aad3953164dff834b54bac8ccb808d6 https://www.encodeproject.org/files/ENCFF297TGM/@@download/ENCFF297TGM.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF264NMX bigBed narrowPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF297TGM 5394929 ENCODE Processing Pipeline eb7bc8e10642befe99c4c4eb41495c67 https://www.encodeproject.org/files/ENCFF264NMX/@@download/ENCFF264NMX.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF781VZB bigBed narrowPeak peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF698FKP 5867191 ENCODE Processing Pipeline 3a5f9bd807165fa47a57c28d3c8fc971 https://www.encodeproject.org/files/ENCFF781VZB/@@download/ENCFF781VZB.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF519TMV bigBed narrowPeak replicated peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF390MOP 4174028 ENCODE Processing Pipeline 0565167559591897ec9a818914e58356 https://www.encodeproject.org/files/ENCFF519TMV/@@download/ENCFF519TMV.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF601UNS bigWig fold change over control ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF252LJW, ENCFF310NCX, ENCFF758PYU 256898611 ENCODE Processing Pipeline cc478a5c4ddd82af59e91a0b82dfca08 https://www.encodeproject.org/files/ENCFF601UNS/@@download/ENCFF601UNS.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF390MOP bed narrowPeak replicated peaks ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF154GXN, ENCFF297TGM, ENCFF698FKP 2232916 ENCODE Processing Pipeline 6bb3ed1feccac2a9df1e246c71b13109 https://www.encodeproject.org/files/ENCFF390MOP/@@download/ENCFF390MOP.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF002AMA fastq reads ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1389144444 Bing Ren, UCSD 7415481104ba4d1ead88c15c4a0b5b4f SRA:SRR3651779 https://www.encodeproject.org/files/ENCFF002AMA/@@download/ENCFF002AMA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARL/ released control low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AMC fastq reads ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1575399192 Bing Ren, UCSD 5b89a165c0ef0819201dfdb7ccd4b064 SRA:SRR3651778 https://www.encodeproject.org/files/ENCFF002AMC/@@download/ENCFF002AMC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARI/ released control low read depth, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF876EZY bam alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMC, ENCFF806TVZ 911012531 ENCODE Processing Pipeline c8c3e1d08b4c864afe91be1d479d3f97 https://www.encodeproject.org/files/ENCFF876EZY/@@download/ENCFF876EZY.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF690IWF bam alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMA, ENCFF806TVZ 1292641164 ENCODE Processing Pipeline bd3f48f73436aa33c702f5dc37c62964 https://www.encodeproject.org/files/ENCFF690IWF/@@download/ENCFF690IWF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF182AAQ bed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF690IWF, ENCFF876EZY, ENCFF946XCS 730707 ENCODE Processing Pipeline d225753462d23359d5cca6cae5fe0838 https://www.encodeproject.org/files/ENCFF182AAQ/@@download/ENCFF182AAQ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF278FDW bed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF690IWF, ENCFF946XCS 927788 ENCODE Processing Pipeline 3eb2030836baed7cfec916504fb94358 https://www.encodeproject.org/files/ENCFF278FDW/@@download/ENCFF278FDW.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF639MSH bed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF876EZY 945540 ENCODE Processing Pipeline d2bca4560367441efc9bb9f61d4c202e https://www.encodeproject.org/files/ENCFF639MSH/@@download/ENCFF639MSH.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF370OZI bigBed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF278FDW 2255702 ENCODE Processing Pipeline a1baff8db3989d6366f36472fc21288c https://www.encodeproject.org/files/ENCFF370OZI/@@download/ENCFF370OZI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF784IXO bigBed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF639MSH 2326362 ENCODE Processing Pipeline b1f05a39512538f8ba169b954ff148fc https://www.encodeproject.org/files/ENCFF784IXO/@@download/ENCFF784IXO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF638FNJ bigBed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182AAQ 2352712 ENCODE Processing Pipeline 21b01e1a986a9b32b7bf80f0205019da https://www.encodeproject.org/files/ENCFF638FNJ/@@download/ENCFF638FNJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF884BWJ bigWig signal p-value ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF876EZY 292361354 ENCODE Processing Pipeline 96755873592127fbafbe8ef3eb26004f https://www.encodeproject.org/files/ENCFF884BWJ/@@download/ENCFF884BWJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF887ARW bigWig signal p-value ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF690IWF, ENCFF946XCS 415481252 ENCODE Processing Pipeline f395ccf8007cbaf02290ea68d6b9cbf8 https://www.encodeproject.org/files/ENCFF887ARW/@@download/ENCFF887ARW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF229UXS bigWig signal p-value ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF690IWF, ENCFF876EZY, ENCFF946XCS 613546395 ENCODE Processing Pipeline e23207d720cf6eed1740fe18c60ad1b4 https://www.encodeproject.org/files/ENCFF229UXS/@@download/ENCFF229UXS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF539ZFU bigWig fold change over control ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF876EZY 290319865 ENCODE Processing Pipeline 0c2d1ea30760a9dd0fed437c84ba40ee https://www.encodeproject.org/files/ENCFF539ZFU/@@download/ENCFF539ZFU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF152KFY bigWig fold change over control ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF690IWF, ENCFF946XCS 434122925 ENCODE Processing Pipeline 83f028a54bf64edb317cab444303c977 https://www.encodeproject.org/files/ENCFF152KFY/@@download/ENCFF152KFY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF428WOD bigWig fold change over control ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF690IWF, ENCFF876EZY, ENCFF946XCS 657667995 ENCODE Processing Pipeline 86ceb7c4d00e49a965334ab5cef45d06 https://www.encodeproject.org/files/ENCFF428WOD/@@download/ENCFF428WOD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF937PCT bigBed narrowPeak replicated peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF713FMD 2106557 ENCODE Processing Pipeline cf1e33042773f4a7bf860162f61e3718 https://www.encodeproject.org/files/ENCFF937PCT/@@download/ENCFF937PCT.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF713FMD bed narrowPeak replicated peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182AAQ, ENCFF278FDW, ENCFF639MSH 826301 ENCODE Processing Pipeline 6226119d7f5e10e04239dd8f4d8d2158 https://www.encodeproject.org/files/ENCFF713FMD/@@download/ENCFF713FMD.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF910RVK bam unfiltered alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMC, ENCFF018NEO 1471172679 ENCODE Processing Pipeline 3d349f2283259802aaf97c6b82a9edb7 https://www.encodeproject.org/files/ENCFF910RVK/@@download/ENCFF910RVK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF729PEX bam unfiltered alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMA, ENCFF018NEO 1403076125 ENCODE Processing Pipeline 17f30d88627ce7c0d73993ad88b38270 https://www.encodeproject.org/files/ENCFF729PEX/@@download/ENCFF729PEX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF731QVA bam alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMC, ENCFF018NEO 681695630 ENCODE Processing Pipeline c6d2cac8d590e79f400ff187dd8c64af https://www.encodeproject.org/files/ENCFF731QVA/@@download/ENCFF731QVA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF033ZXN bam alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMA, ENCFF018NEO 968600487 ENCODE Processing Pipeline 0edaa9ed78a3d1a62a1fe932b0eb34af https://www.encodeproject.org/files/ENCFF033ZXN/@@download/ENCFF033ZXN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF536JGM bed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF731QVA 942621 ENCODE Processing Pipeline e2e75ddc0fd398d983ba7436a9585106 https://www.encodeproject.org/files/ENCFF536JGM/@@download/ENCFF536JGM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF802LTO bed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033ZXN, ENCFF292SSW, ENCFF482UTL 801213 ENCODE Processing Pipeline c0c4da8376dd66d8ec94915ec78e9dc7 https://www.encodeproject.org/files/ENCFF802LTO/@@download/ENCFF802LTO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF878WOD bed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033ZXN, ENCFF292SSW, ENCFF482UTL, ENCFF731QVA 845623 ENCODE Processing Pipeline c88cf7c2d2fdb0490f250d055a042d09 https://www.encodeproject.org/files/ENCFF878WOD/@@download/ENCFF878WOD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF791ZLU bigBed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF536JGM 2313173 ENCODE Processing Pipeline 558628a999d28c40a986eed1605d9d42 https://www.encodeproject.org/files/ENCFF791ZLU/@@download/ENCFF791ZLU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF788XFN bigBed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF878WOD 2655719 ENCODE Processing Pipeline f0e5fd915f7f5357d311c2f7bdaf49a3 https://www.encodeproject.org/files/ENCFF788XFN/@@download/ENCFF788XFN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF924RZA bigBed narrowPeak peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF802LTO 2505113 ENCODE Processing Pipeline 97998bfe76f735f8ac4283b46529c112 https://www.encodeproject.org/files/ENCFF924RZA/@@download/ENCFF924RZA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF700VEN bigWig signal p-value ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033ZXN, ENCFF292SSW, ENCFF482UTL 376063583 ENCODE Processing Pipeline 6f1037cc8fe69d8ae158fd50f36d5665 https://www.encodeproject.org/files/ENCFF700VEN/@@download/ENCFF700VEN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF503TFY bigWig signal p-value ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF731QVA 351157020 ENCODE Processing Pipeline 9f867713a9630aced9f9338b4ee8770e https://www.encodeproject.org/files/ENCFF503TFY/@@download/ENCFF503TFY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF439NQG bigWig signal p-value ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033ZXN, ENCFF292SSW, ENCFF482UTL, ENCFF731QVA 601910318 ENCODE Processing Pipeline dda0c92048b8a78bec02d57216f205cd https://www.encodeproject.org/files/ENCFF439NQG/@@download/ENCFF439NQG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF164DVL bigWig fold change over control ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF731QVA 277283197 ENCODE Processing Pipeline 270638ce775ae3779aae7161bb77ad77 https://www.encodeproject.org/files/ENCFF164DVL/@@download/ENCFF164DVL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF032PPF bigWig fold change over control ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033ZXN, ENCFF292SSW, ENCFF482UTL 432637353 ENCODE Processing Pipeline dff5a00f3808ac913280ae2b1389e0a5 https://www.encodeproject.org/files/ENCFF032PPF/@@download/ENCFF032PPF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF761AXJ bigWig fold change over control ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033ZXN, ENCFF292SSW, ENCFF482UTL, ENCFF731QVA 616734904 ENCODE Processing Pipeline b475ee46e92ef68097c0cda1a080c8ed https://www.encodeproject.org/files/ENCFF761AXJ/@@download/ENCFF761AXJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF139SVN bigBed narrowPeak replicated peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF383UIR 2066280 ENCODE Processing Pipeline 7081635a0d02636091f27902888b6518 https://www.encodeproject.org/files/ENCFF139SVN/@@download/ENCFF139SVN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF383UIR bed narrowPeak replicated peaks ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF536JGM, ENCFF802LTO, ENCFF878WOD 805807 ENCODE Processing Pipeline 058ea1bece4d4de0b74a218eb09ee9b2 https://www.encodeproject.org/files/ENCFF383UIR/@@download/ENCFF383UIR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002ANG fastq reads ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 816290353 Bing Ren, UCSD 87b9a96bb0058478967d108022d56111 SRA:SRR3651733 https://www.encodeproject.org/files/ENCFF002ANG/@@download/ENCFF002ANG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARC/ released low read length, inconsistent control read length, low read depth ENCFF002ANM fastq reads ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 929492591 Bing Ren, UCSD 59ebc56f2ce769b51dd6027a9a0f468b SRA:SRR3651734 https://www.encodeproject.org/files/ENCFF002ANM/@@download/ENCFF002ANM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARH/ released low read length, inconsistent control read length, low read depth ENCFF633COQ bam alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANM, ENCFF806TVZ 659042790 ENCODE Processing Pipeline f8ad5d385334b2d87704a70defb406c6 https://www.encodeproject.org/files/ENCFF633COQ/@@download/ENCFF633COQ.bam mm10-minimal archived low read length, low read depth ENCFF510XAK bam alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANG, ENCFF806TVZ 555102248 ENCODE Processing Pipeline 927408e09cb70e6266a105c7a3445ee9 https://www.encodeproject.org/files/ENCFF510XAK/@@download/ENCFF510XAK.bam mm10-minimal archived low read length, low read depth ENCFF995GLE bed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF510XAK, ENCFF633COQ, ENCFF989KGL 519269 ENCODE Processing Pipeline b3995ddae4473ae842f64f14805b8536 https://www.encodeproject.org/files/ENCFF995GLE/@@download/ENCFF995GLE.bed.gz mm10-minimal archived low read length, low read depth ENCFF841QNM bed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF633COQ, ENCFF989KGL 438313 ENCODE Processing Pipeline 5eaeaa4eb78a244b53ae23eadf8ed1b7 https://www.encodeproject.org/files/ENCFF841QNM/@@download/ENCFF841QNM.bed.gz mm10-minimal archived low read length, low read depth ENCFF707ATR bed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF510XAK, ENCFF989KGL 496392 ENCODE Processing Pipeline 3047be03088df65694d29e8a34316e28 https://www.encodeproject.org/files/ENCFF707ATR/@@download/ENCFF707ATR.bed.gz mm10-minimal archived low read length, low read depth ENCFF162NNO bigBed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF841QNM 1525084 ENCODE Processing Pipeline 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False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF510XAK, ENCFF989KGL 425426594 ENCODE Processing Pipeline 87b59a9783f9bc5dfa830d9b39e7f158 https://www.encodeproject.org/files/ENCFF846VLW/@@download/ENCFF846VLW.bigWig mm10-minimal archived low read length, low read depth ENCFF332XQE bigWig signal p-value ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF633COQ, ENCFF989KGL 446095851 ENCODE Processing Pipeline b9704a24505e7b781c16fc1351d40714 https://www.encodeproject.org/files/ENCFF332XQE/@@download/ENCFF332XQE.bigWig mm10-minimal archived low read length, low read depth ENCFF935MAL bigWig signal p-value ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF510XAK, ENCFF633COQ, ENCFF989KGL 607426464 ENCODE Processing Pipeline 1d49761d6ab7e35c3aee445a1e79d688 https://www.encodeproject.org/files/ENCFF935MAL/@@download/ENCFF935MAL.bigWig mm10-minimal archived low read length, low read depth ENCFF309SSF bigWig fold change over control ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF633COQ, ENCFF989KGL 420994838 ENCODE Processing Pipeline fc51bfa0bccaf0af08d77e0cd3040663 https://www.encodeproject.org/files/ENCFF309SSF/@@download/ENCFF309SSF.bigWig mm10-minimal archived low read length, low read depth ENCFF929HGC bigWig fold change over control ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF510XAK, ENCFF989KGL 317683741 ENCODE Processing Pipeline c0cad95f14272f3e503c592f3db04729 https://www.encodeproject.org/files/ENCFF929HGC/@@download/ENCFF929HGC.bigWig mm10-minimal archived low read length, low read depth ENCFF029PNF bigWig fold change over control ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF510XAK, ENCFF633COQ, ENCFF989KGL 598949132 ENCODE Processing Pipeline de995c4e267bdce0346994bbfc724eb0 https://www.encodeproject.org/files/ENCFF029PNF/@@download/ENCFF029PNF.bigWig mm10-minimal archived low read length, low read depth ENCFF582ZLF bed narrowPeak replicated peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF707ATR, ENCFF841QNM, ENCFF995GLE 531831 ENCODE Processing Pipeline 47e25df6d0d2e8e661326508e10afb74 https://www.encodeproject.org/files/ENCFF582ZLF/@@download/ENCFF582ZLF.bed.gz mm10-minimal archived low read length, low read depth ENCFF325KUM bigBed narrowPeak replicated peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF582ZLF 1425259 ENCODE Processing Pipeline 727041cae3a91f3ac7148c124b6a4079 https://www.encodeproject.org/files/ENCFF325KUM/@@download/ENCFF325KUM.bigBed mm10-minimal archived low read length, low read depth ENCFF982VZC bam unfiltered alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANG, ENCFF018NEO 851221258 ENCODE Processing Pipeline ec64d5c1cbd081a00e22c9db890e7f4b https://www.encodeproject.org/files/ENCFF982VZC/@@download/ENCFF982VZC.bam mm10 released low read length, low read depth ENCFF058JGK bam unfiltered alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANM, ENCFF018NEO 993822015 ENCODE Processing Pipeline 3bca74fa959773fdfb7a06b891a9395b https://www.encodeproject.org/files/ENCFF058JGK/@@download/ENCFF058JGK.bam mm10 released low read length, low read depth ENCFF206DXM bam alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANG, ENCFF018NEO 554947264 ENCODE Processing Pipeline 5d5356f14cd0ed7e9a98d9e80f10b06b https://www.encodeproject.org/files/ENCFF206DXM/@@download/ENCFF206DXM.bam mm10 released low read length, low read depth ENCFF428OFW bam alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANM, ENCFF018NEO 658822902 ENCODE Processing Pipeline 98eae4e93e0a0153d86845d317be0b69 https://www.encodeproject.org/files/ENCFF428OFW/@@download/ENCFF428OFW.bam mm10 released low read length, low read depth ENCFF919XEF bed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF206DXM, ENCFF782YCY, ENCFF922FWV 503554 ENCODE Processing Pipeline 7aa1048abe23a784d763d481f177f58c https://www.encodeproject.org/files/ENCFF919XEF/@@download/ENCFF919XEF.bed.gz mm10 released low read length, low read depth ENCFF686KPB bed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF428OFW, ENCFF782YCY, ENCFF922FWV 441527 ENCODE Processing Pipeline da3b153ae775105f433c897d62789ab9 https://www.encodeproject.org/files/ENCFF686KPB/@@download/ENCFF686KPB.bed.gz mm10 released low read length, low read depth ENCFF495NLP bed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF206DXM, ENCFF428OFW, ENCFF782YCY, ENCFF922FWV 510723 ENCODE Processing Pipeline f13c07efa87b37c1e08ead373075e895 https://www.encodeproject.org/files/ENCFF495NLP/@@download/ENCFF495NLP.bed.gz mm10 released low read length, low read depth ENCFF153HJR bigBed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF919XEF 1710295 ENCODE Processing Pipeline c0e16f17aeecdffe086a7cb7f04e809e https://www.encodeproject.org/files/ENCFF153HJR/@@download/ENCFF153HJR.bigBed mm10 released low read length, low read depth ENCFF872LWO bigBed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF686KPB 1531472 ENCODE Processing Pipeline a4a7bda87567b044602790b0e85a22db https://www.encodeproject.org/files/ENCFF872LWO/@@download/ENCFF872LWO.bigBed mm10 released low read length, low read depth ENCFF671OWX bigBed narrowPeak peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF495NLP 1721076 ENCODE Processing Pipeline 3e88b2fed40be6f58f9ffdf1e2645d03 https://www.encodeproject.org/files/ENCFF671OWX/@@download/ENCFF671OWX.bigBed mm10 released low read length, low read depth ENCFF253SVP bigWig signal p-value ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF206DXM, ENCFF782YCY, ENCFF922FWV 426962376 ENCODE Processing Pipeline 4149fea1a60489e1a1b7e26f94e8b4b5 https://www.encodeproject.org/files/ENCFF253SVP/@@download/ENCFF253SVP.bigWig mm10 released low read length, low read depth ENCFF569LHQ bigWig signal p-value ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF428OFW, ENCFF782YCY, ENCFF922FWV 455112887 ENCODE Processing Pipeline 0f4cd0567c6727f7139d13681df3743a https://www.encodeproject.org/files/ENCFF569LHQ/@@download/ENCFF569LHQ.bigWig mm10 released low read length, low read depth ENCFF078KMK bigWig signal p-value ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF206DXM, ENCFF428OFW, ENCFF782YCY, ENCFF922FWV 575185424 ENCODE Processing Pipeline 50845cda953f5e5bc60b9ac82d7bc166 https://www.encodeproject.org/files/ENCFF078KMK/@@download/ENCFF078KMK.bigWig mm10 released low read length, low read depth ENCFF731LQG bigWig fold change over control ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF206DXM, ENCFF782YCY, ENCFF922FWV 351399414 ENCODE Processing Pipeline e9d1614da8d9879750dafee178ae2d8f https://www.encodeproject.org/files/ENCFF731LQG/@@download/ENCFF731LQG.bigWig mm10 released low read length, low read depth ENCFF540URQ bigWig fold change over control ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF428OFW, ENCFF782YCY, ENCFF922FWV 412533742 ENCODE Processing Pipeline 12d4884eac9d1a0d80a3e7981a07f74c https://www.encodeproject.org/files/ENCFF540URQ/@@download/ENCFF540URQ.bigWig mm10 released low read length, low read depth ENCFF377ZXP bigWig fold change over control ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF206DXM, ENCFF428OFW, ENCFF782YCY, ENCFF922FWV 609895938 ENCODE Processing Pipeline 31bb60c55ecd2e342607715a5657a702 https://www.encodeproject.org/files/ENCFF377ZXP/@@download/ENCFF377ZXP.bigWig mm10 released low read length, low read depth ENCFF079BXN bed narrowPeak replicated peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF495NLP, ENCFF686KPB, ENCFF919XEF 538212 ENCODE Processing Pipeline 948ec5027e508c12a1b2d4bb6262d253 https://www.encodeproject.org/files/ENCFF079BXN/@@download/ENCFF079BXN.bed.gz mm10 released low read length, low read depth ENCFF897JSM bigBed narrowPeak replicated peaks ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF079BXN 1419521 ENCODE Processing Pipeline cd427b4f37ec24debf3e1024a15ce323 https://www.encodeproject.org/files/ENCFF897JSM/@@download/ENCFF897JSM.bigBed mm10 released low read length, low read depth ENCFF472UJC fastq reads ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1918072978 Bing Ren, UCSD 840f15b9725024fbaf2a8b11b16f5b4d SRA:SRR3652441 https://www.encodeproject.org/files/ENCFF472UJC/@@download/ENCFF472UJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF363PBS fastq reads ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3035692304 Bing Ren, UCSD 488b8eb06a8bdc9c22024f37b4567628 SRA:SRR3652439 https://www.encodeproject.org/files/ENCFF363PBS/@@download/ENCFF363PBS.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF285DAO fastq reads ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 188218279 Bing Ren, UCSD c219226f909bb9768ff4f60594fdf3db SRA:SRR3652442 https://www.encodeproject.org/files/ENCFF285DAO/@@download/ENCFF285DAO.fastq.gz Illumina HiSeq 2500 /files/ENCFF636CUM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF046IFA fastq reads ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1280612553 Bing Ren, UCSD 2362700efe55df63776219ba4393f174 SRA:SRR3652443 https://www.encodeproject.org/files/ENCFF046IFA/@@download/ENCFF046IFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF241WGQ fastq reads ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 664859641 Bing Ren, UCSD 809b7309a69ecfaec08e953a53574655 SRA:SRR3652440 https://www.encodeproject.org/files/ENCFF241WGQ/@@download/ENCFF241WGQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF849AGF bam alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF046IFA, ENCFF285DAO, ENCFF472UJC, ENCFF806TVZ 2781480748 ENCODE Processing Pipeline e4527002b7a72c80ece3ece0b698bbb5 https://www.encodeproject.org/files/ENCFF849AGF/@@download/ENCFF849AGF.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF728NIO bam alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF241WGQ, ENCFF363PBS, ENCFF806TVZ 2891786046 ENCODE Processing Pipeline af1f33fe3f6db962c94722501fb09e22 https://www.encodeproject.org/files/ENCFF728NIO/@@download/ENCFF728NIO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF857YIU bed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF849AGF, ENCFF881FJP 1596429 ENCODE Processing Pipeline 24799a32e07ec72408ce2a3658edc526 https://www.encodeproject.org/files/ENCFF857YIU/@@download/ENCFF857YIU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF112AFZ bed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF728NIO, ENCFF881FJP 1976213 ENCODE Processing Pipeline ddc57fad998831028a4845dd35cfddcb https://www.encodeproject.org/files/ENCFF112AFZ/@@download/ENCFF112AFZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF985OPC bigBed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF857YIU 3152079 ENCODE Processing Pipeline b9bacac67e42603286cfe110dfab70e5 https://www.encodeproject.org/files/ENCFF985OPC/@@download/ENCFF985OPC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF251XJK bigBed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF434GVY 5468500 ENCODE Processing Pipeline d3e5f6aac33715df4b761304ac8bb006 https://www.encodeproject.org/files/ENCFF251XJK/@@download/ENCFF251XJK.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF434GVY bed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF728NIO, ENCFF849AGF, ENCFF881FJP 2262807 ENCODE Processing Pipeline 4bc5b8e1533d56448eeedd0218d6a84e https://www.encodeproject.org/files/ENCFF434GVY/@@download/ENCFF434GVY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF280CPS bigBed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF112AFZ 3819109 ENCODE Processing Pipeline a280168589c4af930337d47962acfd10 https://www.encodeproject.org/files/ENCFF280CPS/@@download/ENCFF280CPS.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF343OBM bigWig signal p-value ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF728NIO, ENCFF881FJP 1183765881 ENCODE Processing Pipeline 48c9beb785ebea4cf1930d355f11046a https://www.encodeproject.org/files/ENCFF343OBM/@@download/ENCFF343OBM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF472TSW bigWig signal p-value ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF728NIO, ENCFF849AGF, ENCFF881FJP 1487808253 ENCODE Processing Pipeline 19283b5f771d54b7434b42e4b6ac221d https://www.encodeproject.org/files/ENCFF472TSW/@@download/ENCFF472TSW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF653HMD bigWig signal p-value ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF849AGF, ENCFF881FJP 973380255 ENCODE Processing Pipeline 37b2c243f9c9e16b6a69e82b03aece88 https://www.encodeproject.org/files/ENCFF653HMD/@@download/ENCFF653HMD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF471PXI bigWig fold change over control ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF849AGF, ENCFF881FJP 1150952857 ENCODE Processing Pipeline f9a7df96a710d5493dff7ff0ce404653 https://www.encodeproject.org/files/ENCFF471PXI/@@download/ENCFF471PXI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF170WTN bigWig fold change over control ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF728NIO, ENCFF881FJP 1200702815 ENCODE Processing Pipeline 785e4d299f7bb7e413865190eed6bfc8 https://www.encodeproject.org/files/ENCFF170WTN/@@download/ENCFF170WTN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF293JLE bigWig fold change over control ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF728NIO, ENCFF849AGF, ENCFF881FJP 1713332602 ENCODE Processing Pipeline 0c907bc5660a71164d8081679dec213e https://www.encodeproject.org/files/ENCFF293JLE/@@download/ENCFF293JLE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF782BQK bed narrowPeak replicated peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF112AFZ, ENCFF434GVY, ENCFF857YIU 1183391 ENCODE Processing Pipeline b590ba3fa633382598b010385a75405a https://www.encodeproject.org/files/ENCFF782BQK/@@download/ENCFF782BQK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF819YNY bigBed narrowPeak replicated peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF782BQK 2382162 ENCODE Processing Pipeline b259bdd246fef42be361d2aee7f5668f https://www.encodeproject.org/files/ENCFF819YNY/@@download/ENCFF819YNY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF031MFD bam alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF241WGQ, ENCFF363PBS 2891238208 ENCODE Processing Pipeline 7d31fc16cc728c4e263a380fe3172309 https://www.encodeproject.org/files/ENCFF031MFD/@@download/ENCFF031MFD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF361JMG bam unfiltered alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF241WGQ, ENCFF363PBS 4319671345 ENCODE Processing Pipeline eb5a1c17e2a4fe365dfd1ef3f64bb51e https://www.encodeproject.org/files/ENCFF361JMG/@@download/ENCFF361JMG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF869LGO bam alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF046IFA, ENCFF285DAO, ENCFF472UJC 2780957487 ENCODE Processing Pipeline b82ebe26fa2fd3dda8836fee069a3d76 https://www.encodeproject.org/files/ENCFF869LGO/@@download/ENCFF869LGO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF158MZF bam unfiltered alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF046IFA, ENCFF285DAO, ENCFF472UJC 4013997507 ENCODE Processing Pipeline d47966fac9434413844879bc1113434a https://www.encodeproject.org/files/ENCFF158MZF/@@download/ENCFF158MZF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF299PYG bed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF869LGO 1589504 ENCODE Processing Pipeline dcda850eee157a4656fb5703d0b7a978 https://www.encodeproject.org/files/ENCFF299PYG/@@download/ENCFF299PYG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF540LBD bed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031MFD, ENCFF209HPI, ENCFF634NAV 1737212 ENCODE Processing Pipeline 8022999701e3f63ba7221f52a3b30898 https://www.encodeproject.org/files/ENCFF540LBD/@@download/ENCFF540LBD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF855QXW bed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031MFD, ENCFF209HPI, ENCFF634NAV, ENCFF869LGO 2188717 ENCODE Processing Pipeline 11b271a71d502406c8987dc885bfa7c0 https://www.encodeproject.org/files/ENCFF855QXW/@@download/ENCFF855QXW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF713GRC bigBed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF299PYG 3154964 ENCODE Processing Pipeline 7844abae5a67cf8e313205a55b15ad9c https://www.encodeproject.org/files/ENCFF713GRC/@@download/ENCFF713GRC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF129AEQ bigBed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF540LBD 4343120 ENCODE Processing Pipeline a64c6fa6101993612dd991bdf428321b https://www.encodeproject.org/files/ENCFF129AEQ/@@download/ENCFF129AEQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF859OIB bigBed narrowPeak peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF855QXW 5315748 ENCODE Processing Pipeline aed2852c7a99246335064ac191a39bed https://www.encodeproject.org/files/ENCFF859OIB/@@download/ENCFF859OIB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF241GPL bigWig signal p-value ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF869LGO 1181031147 ENCODE Processing Pipeline 461e0eb0de7cf7b4b8082036e321e608 https://www.encodeproject.org/files/ENCFF241GPL/@@download/ENCFF241GPL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF264OMR bigWig signal p-value ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031MFD, ENCFF209HPI, ENCFF634NAV 964450463 ENCODE Processing Pipeline 2271d4bee341adfd80930363f76c25a1 https://www.encodeproject.org/files/ENCFF264OMR/@@download/ENCFF264OMR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF396ZFS bigWig signal p-value ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031MFD, ENCFF209HPI, ENCFF634NAV, ENCFF869LGO 1703093974 ENCODE Processing Pipeline 8bebd9fa8426a1a87b85f22e3d8041cb https://www.encodeproject.org/files/ENCFF396ZFS/@@download/ENCFF396ZFS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF515OQN bigWig fold change over control ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF869LGO 1199321430 ENCODE Processing Pipeline f3881688fd65987774b3fee34e377080 https://www.encodeproject.org/files/ENCFF515OQN/@@download/ENCFF515OQN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF071DQD bigWig fold change over control ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031MFD, ENCFF209HPI, ENCFF634NAV 1240729680 ENCODE Processing Pipeline c4a6b9284f2a7db74ebf7e7d75f9768e https://www.encodeproject.org/files/ENCFF071DQD/@@download/ENCFF071DQD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF520CMB bigWig fold change over control ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031MFD, ENCFF209HPI, ENCFF634NAV, ENCFF869LGO 1748092393 ENCODE Processing Pipeline 4a1f3429204f1adec885526744222e9e https://www.encodeproject.org/files/ENCFF520CMB/@@download/ENCFF520CMB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF398IQT bed narrowPeak replicated peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF299PYG, ENCFF540LBD, ENCFF855QXW 1167554 ENCODE Processing Pipeline b405a9faf143c77f80f09ddf9b0d0c15 https://www.encodeproject.org/files/ENCFF398IQT/@@download/ENCFF398IQT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF669CTE bigBed narrowPeak replicated peaks ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF398IQT 2342743 ENCODE Processing Pipeline c99dff236e239f4722c6bd23167fcaad https://www.encodeproject.org/files/ENCFF669CTE/@@download/ENCFF669CTE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF150DJK fastq reads ENCSR270KSY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 2062948320 Richard Myers, HAIB 7e76eda2f9f7939281998c1b026708da https://www.encodeproject.org/files/ENCFF150DJK/@@download/ENCFF150DJK.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF373LTM bam unfiltered alignments ENCSR270KSY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF150DJK 2189566680 ENCODE Processing Pipeline d591f3eda08baad06889936024fb352a https://www.encodeproject.org/files/ENCFF373LTM/@@download/ENCFF373LTM.bam mm10 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF212NWB bam alignments ENCSR270KSY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF150DJK 1582138256 ENCODE Processing Pipeline 312a09db5cc8f0cf96101b4aa9dc525e https://www.encodeproject.org/files/ENCFF212NWB/@@download/ENCFF212NWB.bam mm10 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF338BRH fastq reads ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3346482067 Bing Ren, UCSD 4f32502139971a1f203b809616e055cd SRA:SRR3652365 https://www.encodeproject.org/files/ENCFF338BRH/@@download/ENCFF338BRH.fastq.gz Illumina HiSeq 2000 /files/ENCFF764CBH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF089POY fastq reads ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2890592822 Bing Ren, UCSD c714eef8bfd3a48d978e24486a0b212b SRA:SRR3652366 https://www.encodeproject.org/files/ENCFF089POY/@@download/ENCFF089POY.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF980EMT fastq reads ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 304182181 Bing Ren, UCSD e81d825d774434ff2be9ab740f1e56b7 SRA:SRR3652367 https://www.encodeproject.org/files/ENCFF980EMT/@@download/ENCFF980EMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF272FYH/, /files/ENCFF880ZJK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF279QEX bam alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF089POY, ENCFF806TVZ, ENCFF980EMT 2796093455 ENCODE Processing Pipeline 7b62a40b5135fa8a069f7fdccede6a35 https://www.encodeproject.org/files/ENCFF279QEX/@@download/ENCFF279QEX.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF636PNI bam alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF338BRH, ENCFF806TVZ 2940631830 ENCODE Processing Pipeline 5b162d9268b3f4fc532dee6ff75722ce https://www.encodeproject.org/files/ENCFF636PNI/@@download/ENCFF636PNI.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF915WDY bed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF236JLN, ENCFF279QEX, ENCFF711NEU 2116009 ENCODE Processing Pipeline a64180c760f5940b855b3324f718783f https://www.encodeproject.org/files/ENCFF915WDY/@@download/ENCFF915WDY.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF638RHD bed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF636PNI, ENCFF711NEU 2130539 ENCODE Processing Pipeline 24a1fdd799fdfaea0becc1d56753a54c https://www.encodeproject.org/files/ENCFF638RHD/@@download/ENCFF638RHD.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF970YXB bed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF279QEX, ENCFF636PNI, ENCFF711NEU 1946304 ENCODE Processing Pipeline 47eec487826ab779d0191bd2048e673d https://www.encodeproject.org/files/ENCFF970YXB/@@download/ENCFF970YXB.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF264JOR bigBed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF638RHD 4719951 ENCODE Processing Pipeline 11a6372586f95ecfc8f63a551e523019 https://www.encodeproject.org/files/ENCFF264JOR/@@download/ENCFF264JOR.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF549KPA bigBed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF915WDY 4726778 ENCODE Processing Pipeline c1fcc5a3ff5a9abbb5b3d879ea7d5a24 https://www.encodeproject.org/files/ENCFF549KPA/@@download/ENCFF549KPA.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF523HZX bigBed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF970YXB 4253311 ENCODE Processing Pipeline 76eda63eab14df077e06cda9072d1780 https://www.encodeproject.org/files/ENCFF523HZX/@@download/ENCFF523HZX.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF638BPL bigWig signal p-value ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF636PNI, ENCFF711NEU 779598832 ENCODE Processing Pipeline f55675c2cbe814ee6639041d2875284e https://www.encodeproject.org/files/ENCFF638BPL/@@download/ENCFF638BPL.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF568AGI bigWig signal p-value ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF236JLN, ENCFF279QEX, ENCFF711NEU 840392065 ENCODE Processing Pipeline 8721d70b6d8cc9d307ca20d101e7222d https://www.encodeproject.org/files/ENCFF568AGI/@@download/ENCFF568AGI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF286BEX bigWig signal p-value ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF279QEX, ENCFF636PNI, ENCFF711NEU 1234167732 ENCODE Processing Pipeline 9fe622ec8606d3ba94fabca5e6cbcf2e https://www.encodeproject.org/files/ENCFF286BEX/@@download/ENCFF286BEX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF886ORR bigWig fold change over control ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF236JLN, ENCFF636PNI, ENCFF711NEU 1050053329 ENCODE Processing Pipeline 39cd44da07d96633aecf913419146853 https://www.encodeproject.org/files/ENCFF886ORR/@@download/ENCFF886ORR.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF219WZK bigWig fold change over control ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF236JLN, ENCFF279QEX, ENCFF711NEU 1062808846 ENCODE Processing Pipeline c66f41cbb202151f9601c1a59d35c63d https://www.encodeproject.org/files/ENCFF219WZK/@@download/ENCFF219WZK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF096RFJ bigWig fold change over control ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF236JLN, ENCFF279QEX, ENCFF636PNI, ENCFF711NEU 1548145316 ENCODE Processing Pipeline 475c6fdf209ac169d0c46e99dfbbf70c https://www.encodeproject.org/files/ENCFF096RFJ/@@download/ENCFF096RFJ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF420ZZP bed narrowPeak replicated peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF638RHD, ENCFF915WDY, ENCFF970YXB 1499181 ENCODE Processing Pipeline ccd849a08651e7e7b794db89fbd7457a https://www.encodeproject.org/files/ENCFF420ZZP/@@download/ENCFF420ZZP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF372LDH bigBed narrowPeak replicated peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF420ZZP 2786549 ENCODE Processing Pipeline 2bbd1647317dcf3481d13886dc3249b9 https://www.encodeproject.org/files/ENCFF372LDH/@@download/ENCFF372LDH.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF898SVC bam unfiltered alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF338BRH 4012531922 ENCODE Processing Pipeline 66fdee4666c0723254bd564a4b82655c https://www.encodeproject.org/files/ENCFF898SVC/@@download/ENCFF898SVC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF785BEH bam unfiltered alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF089POY, ENCFF980EMT 3841906616 ENCODE Processing Pipeline f272aa5247f3f6e9fd0f1485d459c8eb https://www.encodeproject.org/files/ENCFF785BEH/@@download/ENCFF785BEH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF009GQO bam alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF089POY, ENCFF980EMT 2795404015 ENCODE Processing Pipeline 8bf2c199bac075f507d14463d1a5e780 https://www.encodeproject.org/files/ENCFF009GQO/@@download/ENCFF009GQO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF655YMO bam alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF338BRH 2939955849 ENCODE Processing Pipeline cc87603710487cc8e658361e1930bdc2 https://www.encodeproject.org/files/ENCFF655YMO/@@download/ENCFF655YMO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF695BCJ bed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF580YCN, ENCFF655YMO 2262896 ENCODE Processing Pipeline b87cb7880723db460a121ff690815d07 https://www.encodeproject.org/files/ENCFF695BCJ/@@download/ENCFF695BCJ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF057WXU bed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF009GQO, ENCFF125FAE, ENCFF580YCN 2264014 ENCODE Processing Pipeline a9e0c6845d5aeafb6fd941cae4e52b51 https://www.encodeproject.org/files/ENCFF057WXU/@@download/ENCFF057WXU.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF870JKM bed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF009GQO, ENCFF125FAE, ENCFF580YCN, ENCFF655YMO 2904146 ENCODE Processing Pipeline 2fb06d0321432e08d12ef38485804ce4 https://www.encodeproject.org/files/ENCFF870JKM/@@download/ENCFF870JKM.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF861WLG bigBed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF695BCJ 5024228 ENCODE Processing Pipeline 023b9694fdc0d7d8d53cda56c7401e1a https://www.encodeproject.org/files/ENCFF861WLG/@@download/ENCFF861WLG.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF314JNH bigBed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF057WXU 5062685 ENCODE Processing Pipeline a8b2d1d859fcd5f5e7b75c330976f9e1 https://www.encodeproject.org/files/ENCFF314JNH/@@download/ENCFF314JNH.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF768AEB bigBed narrowPeak peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF870JKM 7925054 ENCODE Processing Pipeline 0644cbaf6f7b87b1802d573d83334c55 https://www.encodeproject.org/files/ENCFF768AEB/@@download/ENCFF768AEB.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF869VGR bigWig signal p-value ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF580YCN, ENCFF655YMO 1221698722 ENCODE Processing Pipeline f2fa7c7171dd8b7bff84e4fd55707519 https://www.encodeproject.org/files/ENCFF869VGR/@@download/ENCFF869VGR.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF107NDB bigWig signal p-value ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF009GQO, ENCFF125FAE, ENCFF580YCN 1199811123 ENCODE Processing Pipeline ac264fb17d58827046521e02e0623b1d https://www.encodeproject.org/files/ENCFF107NDB/@@download/ENCFF107NDB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF761QKJ bigWig signal p-value ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF009GQO, ENCFF125FAE, ENCFF580YCN, ENCFF655YMO 1406024737 ENCODE Processing Pipeline 18d38833e913af2eea6b900a71a04940 https://www.encodeproject.org/files/ENCFF761QKJ/@@download/ENCFF761QKJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF940PDQ bigWig fold change over control ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF125FAE, ENCFF580YCN, ENCFF655YMO 1224796506 ENCODE Processing Pipeline acf404143a278d6bba4b5ecb0cef7b0d https://www.encodeproject.org/files/ENCFF940PDQ/@@download/ENCFF940PDQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF710VOQ bigWig fold change over control ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF009GQO, ENCFF125FAE, ENCFF580YCN 1231280870 ENCODE Processing Pipeline c2754feeadf3954218acbc15510ca863 https://www.encodeproject.org/files/ENCFF710VOQ/@@download/ENCFF710VOQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF179UEK bigWig fold change over control ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF009GQO, ENCFF125FAE, ENCFF580YCN, ENCFF655YMO 1685355306 ENCODE Processing Pipeline 7caec5465700d6e9b2f3a56176b9aa5a https://www.encodeproject.org/files/ENCFF179UEK/@@download/ENCFF179UEK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF748YQD bed narrowPeak replicated peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057WXU, ENCFF695BCJ, ENCFF870JKM 1691298 ENCODE Processing Pipeline d3afc82a5ee575f84a0b1fd52c7706f1 https://www.encodeproject.org/files/ENCFF748YQD/@@download/ENCFF748YQD.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF062QJR bigBed narrowPeak replicated peaks ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF748YQD 3864739 ENCODE Processing Pipeline ac1b3b3e43eb1ecd1285c5d7c7610977 https://www.encodeproject.org/files/ENCFF062QJR/@@download/ENCFF062QJR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001NPX bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NQP 288590652 Michael Snyder, Stanford 5a0ddb376a99c9fc72c054adb25268b0 https://www.encodeproject.org/files/ENCFF001NPX/@@download/ENCFF001NPX.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPY bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NQQ 295544615 Michael Snyder, Stanford 63bdae29367f9c40ae8c48300aab94d5 https://www.encodeproject.org/files/ENCFF001NPY/@@download/ENCFF001NPY.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPZ bigBed narrowPeak peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJE 438950 Michael Snyder, Stanford 51267977e2d87cef034e4e72482c94a7 https://www.encodeproject.org/files/ENCFF001NPZ/@@download/ENCFF001NPZ.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQB bigWig signal ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPX, ENCFF001NPY 244000867 Michael Snyder, Stanford ab42c556cf689c0ef471d19086b9cba8 https://www.encodeproject.org/files/ENCFF001NQB/@@download/ENCFF001NQB.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQP fastq reads ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1005318875 Michael Snyder, Stanford 03a3d5e2998fde6495967e9e7b800c38 https://www.encodeproject.org/files/ENCFF001NQP/@@download/ENCFF001NQP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQQ fastq reads ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1107674500 Michael Snyder, Stanford 2500b9ce365596e7a8f4c32ef609594a https://www.encodeproject.org/files/ENCFF001NQQ/@@download/ENCFF001NQQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJE bed narrowPeak peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPX, ENCFF001NPY 148006 Michael Snyder, Stanford d44b93b7085fb025d2eba5e00bb51743 https://www.encodeproject.org/files/ENCFF001YJE/@@download/ENCFF001YJE.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF049TYL bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NQQ, ENCFF018NEO 654147597 ENCODE Processing Pipeline eccd2ee851894adc26cda5975b3f2f39 https://www.encodeproject.org/files/ENCFF049TYL/@@download/ENCFF049TYL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF462QQJ bam unfiltered alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NQQ, ENCFF018NEO 1243721865 ENCODE Processing Pipeline 4e2548ff518550abb416420c77a94f26 https://www.encodeproject.org/files/ENCFF462QQJ/@@download/ENCFF462QQJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF869RHU bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NQP, ENCFF018NEO 522033050 ENCODE Processing Pipeline 4b3c60033a201b96a3d22898cfc652f1 https://www.encodeproject.org/files/ENCFF869RHU/@@download/ENCFF869RHU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF176BCF bam unfiltered alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NQP, ENCFF018NEO 1110335569 ENCODE Processing Pipeline 9821e3199ea5b61836ab83b6e6a652c5 https://www.encodeproject.org/files/ENCFF176BCF/@@download/ENCFF176BCF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF606UFT bigWig signal p-value ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF049TYL, ENCFF171OVT 227112606 ENCODE Processing Pipeline 035f21153fc1c0631f46ad6701fac704 https://www.encodeproject.org/files/ENCFF606UFT/@@download/ENCFF606UFT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF484PGX bigWig signal p-value ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF869RHU 219641491 ENCODE Processing Pipeline 819477cbf601b2ba59c67b3c0b6aa485 https://www.encodeproject.org/files/ENCFF484PGX/@@download/ENCFF484PGX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF363WUG bed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF869RHU 5329985 ENCODE Processing Pipeline b046f970c3e60e5dd352904d445eea0f https://www.encodeproject.org/files/ENCFF363WUG/@@download/ENCFF363WUG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF514BIL bigWig fold change over control ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF869RHU 213264790 ENCODE Processing Pipeline 1ed51b235d647d6c18f213f1badaba0e https://www.encodeproject.org/files/ENCFF514BIL/@@download/ENCFF514BIL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF388ZJX bigWig fold change over control ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF049TYL, ENCFF171OVT 251501356 ENCODE Processing Pipeline 4df158f084e431a12128396ac24e3224 https://www.encodeproject.org/files/ENCFF388ZJX/@@download/ENCFF388ZJX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF112ZPS bigBed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF363WUG 12652229 ENCODE Processing Pipeline c36e30031609b79a4836e5d8f11a9619 https://www.encodeproject.org/files/ENCFF112ZPS/@@download/ENCFF112ZPS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF573INC bed narrowPeak optimal idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF139JHS, ENCFF363WUG, ENCFF509VJZ, ENCFF547MET 521274 ENCODE Processing Pipeline 4dbf87184df644fcaccf4598ad735e97 https://www.encodeproject.org/files/ENCFF573INC/@@download/ENCFF573INC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF139JHS bed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF049TYL, ENCFF171OVT 5545218 ENCODE Processing Pipeline bf3fb15a0139dae82162fc7c22232e84 https://www.encodeproject.org/files/ENCFF139JHS/@@download/ENCFF139JHS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF403CFT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF591LSO 1077988 ENCODE Processing Pipeline 31fa502cdfa90b55640fb821ed1d6d66 https://www.encodeproject.org/files/ENCFF403CFT/@@download/ENCFF403CFT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF698GQB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF573INC 1106819 ENCODE Processing Pipeline bb362825b8c7e01c0a09e56550e21410 https://www.encodeproject.org/files/ENCFF698GQB/@@download/ENCFF698GQB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF867KLT bigWig signal p-value ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF049TYL, ENCFF171OVT, ENCFF869RHU 308052205 ENCODE Processing Pipeline e9c79adca9df0504164a9e99f93d0054 https://www.encodeproject.org/files/ENCFF867KLT/@@download/ENCFF867KLT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF509VJZ bed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF049TYL, ENCFF171OVT, ENCFF869RHU 6094140 ENCODE Processing Pipeline db858b1846f1b0a3eb79b2f5c96c2e8f https://www.encodeproject.org/files/ENCFF509VJZ/@@download/ENCFF509VJZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF998KIS bigWig fold change over control ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF049TYL, ENCFF171OVT, ENCFF869RHU 387662016 ENCODE Processing Pipeline d0bd1d1e5e044aa1c371ea4e3792a6ec https://www.encodeproject.org/files/ENCFF998KIS/@@download/ENCFF998KIS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF410DMO bigBed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF139JHS 12788193 ENCODE Processing Pipeline 4aba957ab20833e14936bb7f7b849db0 https://www.encodeproject.org/files/ENCFF410DMO/@@download/ENCFF410DMO.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF183XKE bigBed narrowPeak peaks and background as input for IDR ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF509VJZ 12899122 ENCODE Processing Pipeline 507e87b1ecefec77b06bbf19c84b6df6 https://www.encodeproject.org/files/ENCFF183XKE/@@download/ENCFF183XKE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF591LSO bed narrowPeak conservative idr thresholded peaks ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF139JHS, ENCFF363WUG, ENCFF509VJZ, ENCFF547MET 505961 ENCODE Processing Pipeline 1e6dfccb384482e03a97e0779db4ca4d https://www.encodeproject.org/files/ENCFF591LSO/@@download/ENCFF591LSO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001ZTJ fastq reads ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1147313867 Bing Ren, UCSD c2cd09d126df362c3fd7424a1cc07d22 SRA:SRR3652890 https://www.encodeproject.org/files/ENCFF001ZTJ/@@download/ENCFF001ZTJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUI/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF946PVW fastq reads ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 756872979 Bing Ren, UCSD 4f9dc45e91cf64eb06e3a9a87ba0a00b SRA:SRR3652891 https://www.encodeproject.org/files/ENCFF946PVW/@@download/ENCFF946PVW.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUI/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF888RWI bam alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTJ, ENCFF806TVZ, ENCFF946PVW 1171277993 ENCODE Processing Pipeline d03fa61f4fd077f091a20544498f45d0 https://www.encodeproject.org/files/ENCFF888RWI/@@download/ENCFF888RWI.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF367VXW fastq reads ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1701760065 Bing Ren, UCSD 04a144c961b9e1ddc976986d53f8344a SRA:SRR3652892 https://www.encodeproject.org/files/ENCFF367VXW/@@download/ENCFF367VXW.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF134MLA bam alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF367VXW, ENCFF806TVZ 1499081660 ENCODE Processing Pipeline 59bc4e2eb10b4e8022a36cd071d05e3f https://www.encodeproject.org/files/ENCFF134MLA/@@download/ENCFF134MLA.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF033LAE bed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF134MLA, ENCFF265KAG, ENCFF851KTA, ENCFF888RWI 310441 ENCODE Processing Pipeline c278eb7a958501fcac0d98904be31a68 https://www.encodeproject.org/files/ENCFF033LAE/@@download/ENCFF033LAE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF146VHF bigWig signal p-value ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF134MLA, ENCFF265KAG, ENCFF851KTA 460242388 ENCODE Processing Pipeline f45a5fcda0f6f8af4db43b20a1586f21 https://www.encodeproject.org/files/ENCFF146VHF/@@download/ENCFF146VHF.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF722YPX bigWig fold change over control ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF134MLA, ENCFF265KAG, ENCFF851KTA, ENCFF888RWI 759831187 ENCODE Processing Pipeline b487238e8d5fae0a100a10c18027ada0 https://www.encodeproject.org/files/ENCFF722YPX/@@download/ENCFF722YPX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF749JMB bed narrowPeak replicated peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033LAE, ENCFF727FWV, ENCFF751CNL 245049 ENCODE Processing Pipeline b14d937239a1264e3021ca4a316467a0 https://www.encodeproject.org/files/ENCFF749JMB/@@download/ENCFF749JMB.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF727FWV bed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF134MLA, ENCFF265KAG, ENCFF851KTA 411052 ENCODE Processing Pipeline 8a01872a178382b1c9c2b3ae81da5a05 https://www.encodeproject.org/files/ENCFF727FWV/@@download/ENCFF727FWV.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF880XHP bigBed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF751CNL 761427 ENCODE Processing Pipeline 89390a2fd5866bd960fe5c237c4f72b1 https://www.encodeproject.org/files/ENCFF880XHP/@@download/ENCFF880XHP.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF406WMV bigWig signal p-value ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF134MLA, ENCFF265KAG, ENCFF851KTA, ENCFF888RWI 441867549 ENCODE Processing Pipeline cf7cf0f38c7eefa532d41e40f3218b2b https://www.encodeproject.org/files/ENCFF406WMV/@@download/ENCFF406WMV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF027TVX bigBed narrowPeak replicated peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF749JMB 625702 ENCODE Processing Pipeline 8f195d9bc4540b1571b15bb5f995e72f https://www.encodeproject.org/files/ENCFF027TVX/@@download/ENCFF027TVX.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF751CNL bed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF888RWI 262669 ENCODE Processing Pipeline 33ae2d9bb872fc42bc586df2a690721c https://www.encodeproject.org/files/ENCFF751CNL/@@download/ENCFF751CNL.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF414MBY bigBed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033LAE 853239 ENCODE Processing Pipeline 724849761f2828647c8bbc4c34e93b4f https://www.encodeproject.org/files/ENCFF414MBY/@@download/ENCFF414MBY.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF188ROU bigWig signal p-value ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF888RWI 209922152 ENCODE Processing Pipeline 2251b5d4cc455f6fd9bc3f30f8d6979c https://www.encodeproject.org/files/ENCFF188ROU/@@download/ENCFF188ROU.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF020UUI bigWig fold change over control ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF888RWI 342513291 ENCODE Processing Pipeline a358ec16a803a67bb0045f166f3d53f8 https://www.encodeproject.org/files/ENCFF020UUI/@@download/ENCFF020UUI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF352YDM bigBed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF727FWV 941844 ENCODE Processing Pipeline 4972b1baea67ab8ad19aaccebc7e2e9d https://www.encodeproject.org/files/ENCFF352YDM/@@download/ENCFF352YDM.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830GFJ bigWig fold change over control ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF134MLA, ENCFF265KAG, ENCFF851KTA 503575106 ENCODE Processing Pipeline 0b25e623adb01462c886fa703a025717 https://www.encodeproject.org/files/ENCFF830GFJ/@@download/ENCFF830GFJ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF319FLH bam unfiltered alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF018NEO, ENCFF367VXW 1717793888 ENCODE Processing Pipeline 5d03e7ed35f3b80ed2b402416a1a5929 https://www.encodeproject.org/files/ENCFF319FLH/@@download/ENCFF319FLH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF267DNG bam unfiltered alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTJ, ENCFF018NEO, ENCFF946PVW 2120482136 ENCODE Processing Pipeline ddfbda16987ede99d716ec4e8742c1ef https://www.encodeproject.org/files/ENCFF267DNG/@@download/ENCFF267DNG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF356RDU bam alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF018NEO, ENCFF367VXW 1153825621 ENCODE Processing Pipeline ac8f65bbab6c86090fd0ee7d1ff4737c https://www.encodeproject.org/files/ENCFF356RDU/@@download/ENCFF356RDU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF777WBC bam alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTJ, ENCFF018NEO, ENCFF946PVW 1020681941 ENCODE Processing Pipeline 4a0450b626099567efdffbb20ca714b9 https://www.encodeproject.org/files/ENCFF777WBC/@@download/ENCFF777WBC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF605RXV bigBed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF521GBD 775093 ENCODE Processing Pipeline 1a521c84f2c8496cdff1a55d0b10eafa https://www.encodeproject.org/files/ENCFF605RXV/@@download/ENCFF605RXV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF521GBD bed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF777WBC 333598 ENCODE Processing Pipeline 78ddaaba652d8be5be81f8022c465cd3 https://www.encodeproject.org/files/ENCFF521GBD/@@download/ENCFF521GBD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF422AUK bigWig fold change over control ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF356RDU, ENCFF377IXU, ENCFF512NUW, ENCFF777WBC 737737918 ENCODE Processing Pipeline 9e4c4f437ff0bd1ba781a9a64a765021 https://www.encodeproject.org/files/ENCFF422AUK/@@download/ENCFF422AUK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF091ZXR bed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF356RDU, ENCFF377IXU, ENCFF512NUW 403872 ENCODE Processing Pipeline ef955b5f1dd7645731f901b63bcd3cb7 https://www.encodeproject.org/files/ENCFF091ZXR/@@download/ENCFF091ZXR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF222IGQ bigWig signal p-value ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF356RDU, ENCFF377IXU, ENCFF512NUW, ENCFF777WBC 445729644 ENCODE Processing Pipeline ea835eb423a085cda3c3f6b4e68ef4ac https://www.encodeproject.org/files/ENCFF222IGQ/@@download/ENCFF222IGQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF053NGV bigWig fold change over control ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF777WBC 358369817 ENCODE Processing Pipeline ddcb28e1286fb79bca650e3ce2a7bc18 https://www.encodeproject.org/files/ENCFF053NGV/@@download/ENCFF053NGV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF767NRL bigBed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF091ZXR 1124231 ENCODE Processing Pipeline 71a46d0a068fd5bb4820334948d99326 https://www.encodeproject.org/files/ENCFF767NRL/@@download/ENCFF767NRL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF877OGV bigWig signal p-value ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF356RDU, ENCFF377IXU, ENCFF512NUW 461315458 ENCODE Processing Pipeline 8d93b3645f9bc452947b654589b7fbd9 https://www.encodeproject.org/files/ENCFF877OGV/@@download/ENCFF877OGV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF368COX bed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF356RDU, ENCFF377IXU, ENCFF512NUW, ENCFF777WBC 345943 ENCODE Processing Pipeline c4658d16c14679e8747e641824b01350 https://www.encodeproject.org/files/ENCFF368COX/@@download/ENCFF368COX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF140VLR bigWig signal p-value ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF777WBC 268759002 ENCODE Processing Pipeline 4d505c8d5a1ea5ced7abecd248503541 https://www.encodeproject.org/files/ENCFF140VLR/@@download/ENCFF140VLR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF919VJD bigBed narrowPeak peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF368COX 937960 ENCODE Processing Pipeline 93f9e9134589b24ef5d413fb31ca567d https://www.encodeproject.org/files/ENCFF919VJD/@@download/ENCFF919VJD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF246ZNA bigWig fold change over control ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF356RDU, ENCFF377IXU, ENCFF512NUW 475341157 ENCODE Processing Pipeline 98429381da367dafb2b1df430550e9f0 https://www.encodeproject.org/files/ENCFF246ZNA/@@download/ENCFF246ZNA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF705WVF bed narrowPeak replicated peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF091ZXR, ENCFF368COX, ENCFF521GBD 302815 ENCODE Processing Pipeline 0aeade0aacf8c3f2fb2be540eb006b7d https://www.encodeproject.org/files/ENCFF705WVF/@@download/ENCFF705WVF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF717IET bigBed narrowPeak replicated peaks ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF705WVF 754884 ENCODE Processing Pipeline 7b3532c2a1189747ca09f6ec9542ca2e https://www.encodeproject.org/files/ENCFF717IET/@@download/ENCFF717IET.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001KSN bam alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KTB 559789850 Bing Ren, UCSD c3bd61014442b88207a86149dcaef624 https://www.encodeproject.org/files/ENCFF001KSN/@@download/ENCFF001KSN.bam mm9 released low read length, control low read depth, low read depth ENCFF001KSO bam alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KTA 453443881 Bing Ren, UCSD 66fb33c4831f90c4afae61f1809926dd https://www.encodeproject.org/files/ENCFF001KSO/@@download/ENCFF001KSO.bam mm9 released low read length, control low read depth, low read depth ENCFF001KSP bigBed broadPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYT 830254 Bing Ren, UCSD bc09843d9d2106eecf49a87f4db68fd2 https://www.encodeproject.org/files/ENCFF001KSP/@@download/ENCFF001KSP.bigBed mm9 released low read length, control low read depth, low read depth ENCFF001KSS bigWig signal ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSN, ENCFF001KSO 50702298 Bing Ren, UCSD bfb233c839d7de23c8a9f6b73ace92d0 https://www.encodeproject.org/files/ENCFF001KSS/@@download/ENCFF001KSS.bigWig mm9 released low read length, control low read depth, low read depth ENCFF001KTA fastq reads ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 542431533 Bing Ren, UCSD 74a4c4383ea34b84dcfa21ae64b3bc29 https://www.encodeproject.org/files/ENCFF001KTA/@@download/ENCFF001KTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KTF/ released low read length, control low read depth, low read depth ENCFF001KTB fastq reads ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 675927724 Bing Ren, UCSD c1a9547002d6214604e3ec82960eb4ba https://www.encodeproject.org/files/ENCFF001KTB/@@download/ENCFF001KTB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KTC/ released low read length, control low read depth, low read depth ENCFF001XYT bed broadPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KSN, ENCFF001KSO 565041 Bing Ren, UCSD 56a512a53a66d68f23549d5358976cf0 https://www.encodeproject.org/files/ENCFF001XYT/@@download/ENCFF001XYT.bed.gz mm9 released low read length, control low read depth, low read depth ENCFF344BXR bam unfiltered alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTA, ENCFF018NEO 615573734 ENCODE Processing Pipeline 027efe88ca18daac4c0478bc98ec8954 https://www.encodeproject.org/files/ENCFF344BXR/@@download/ENCFF344BXR.bam mm10 released low read length, control low read depth, low read depth ENCFF448YLN bam unfiltered alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTB, ENCFF018NEO 750199180 ENCODE Processing Pipeline e99ba04ea0e4a24ad45ab2700f1737d6 https://www.encodeproject.org/files/ENCFF448YLN/@@download/ENCFF448YLN.bam mm10 released low read length, control low read depth, low read depth ENCFF480HRJ bam alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTB, ENCFF018NEO 566900553 ENCODE Processing Pipeline c3c69cf6b5285a7ea928c3e7cc9a980b https://www.encodeproject.org/files/ENCFF480HRJ/@@download/ENCFF480HRJ.bam mm10 released low read length, control low read depth, low read depth ENCFF617JZE bam alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTA, ENCFF018NEO 455204732 ENCODE Processing Pipeline 94b0b17844503534f35f5c74734717d4 https://www.encodeproject.org/files/ENCFF617JZE/@@download/ENCFF617JZE.bam mm10 released low read length, control low read depth, low read depth ENCFF733ZJZ bigBed narrowPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF176RML 6202566 ENCODE Processing Pipeline 82215150abd40293f2cf789e2435f5b7 https://www.encodeproject.org/files/ENCFF733ZJZ/@@download/ENCFF733ZJZ.bigBed mm10 released low read length, control low read depth, low read depth ENCFF176RML bed narrowPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF480HRJ, ENCFF674KWP, ENCFF914TSC 2325956 ENCODE Processing Pipeline 7c94880483bc00171f427bb641385d95 https://www.encodeproject.org/files/ENCFF176RML/@@download/ENCFF176RML.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF776TAR bed narrowPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF617JZE, ENCFF674KWP, ENCFF914TSC 1902922 ENCODE Processing Pipeline 4f699c09f2b8f10733d1679b42889a72 https://www.encodeproject.org/files/ENCFF776TAR/@@download/ENCFF776TAR.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF197RBJ bed narrowPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF480HRJ, ENCFF617JZE, ENCFF674KWP, ENCFF914TSC 1906494 ENCODE Processing Pipeline fc8118fd90a4d42767efa5f063bea0b3 https://www.encodeproject.org/files/ENCFF197RBJ/@@download/ENCFF197RBJ.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF974QGN bigBed narrowPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF197RBJ 5103900 ENCODE Processing Pipeline 1dcae5b2dabb31c7c4e903ee08581f17 https://www.encodeproject.org/files/ENCFF974QGN/@@download/ENCFF974QGN.bigBed mm10 released low read length, control low read depth, low read depth ENCFF286HBT bigWig signal p-value ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF617JZE, ENCFF674KWP, ENCFF914TSC 312980803 ENCODE Processing Pipeline 7db3b8c9fdbd19ab356b7c7860b89d6a https://www.encodeproject.org/files/ENCFF286HBT/@@download/ENCFF286HBT.bigWig mm10 released low read length, control low read depth, low read depth ENCFF158MSH bigBed narrowPeak peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF776TAR 5187582 ENCODE Processing Pipeline 450e4377fc8869871d74131d623f6897 https://www.encodeproject.org/files/ENCFF158MSH/@@download/ENCFF158MSH.bigBed mm10 released low read length, control low read depth, low read depth ENCFF896RWA bigWig signal p-value ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF480HRJ, ENCFF674KWP, ENCFF914TSC 251386755 ENCODE Processing Pipeline a936dc714f8a4ba0db5a81f644fba28d https://www.encodeproject.org/files/ENCFF896RWA/@@download/ENCFF896RWA.bigWig mm10 released low read length, control low read depth, low read depth ENCFF080LPB bigWig signal p-value ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF480HRJ, ENCFF617JZE, ENCFF674KWP, ENCFF914TSC 322271250 ENCODE Processing Pipeline aa3871b82007843974e8b1a21267d2c9 https://www.encodeproject.org/files/ENCFF080LPB/@@download/ENCFF080LPB.bigWig mm10 released low read length, control low read depth, low read depth ENCFF376FWN bigWig fold change over control ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF617JZE, ENCFF674KWP, ENCFF914TSC 215018221 ENCODE Processing Pipeline f6ec733cc2872eff25811fba94da8f6c https://www.encodeproject.org/files/ENCFF376FWN/@@download/ENCFF376FWN.bigWig mm10 released low read length, control low read depth, low read depth ENCFF924IWW bigWig fold change over control ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF480HRJ, ENCFF617JZE, ENCFF674KWP, ENCFF914TSC 390746346 ENCODE Processing Pipeline 3c13b66cd98fc1d3dcda81eecc723efb https://www.encodeproject.org/files/ENCFF924IWW/@@download/ENCFF924IWW.bigWig mm10 released low read length, control low read depth, low read depth ENCFF083SQP bigWig fold change over control ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF480HRJ, ENCFF674KWP, ENCFF914TSC 244058619 ENCODE Processing Pipeline 25248dfd21c75fd991b7b31ffdee45bc https://www.encodeproject.org/files/ENCFF083SQP/@@download/ENCFF083SQP.bigWig mm10 released low read length, control low read depth, low read depth ENCFF302JKZ bed narrowPeak replicated peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF176RML, ENCFF197RBJ, ENCFF776TAR 2311259 ENCODE Processing Pipeline a06ded3e07dfa44e5c1a660149117e5f https://www.encodeproject.org/files/ENCFF302JKZ/@@download/ENCFF302JKZ.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF519QXR bigBed narrowPeak replicated peaks ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF302JKZ 4540978 ENCODE Processing Pipeline 4722e477b98ae2e4237bf2e717198be2 https://www.encodeproject.org/files/ENCFF519QXR/@@download/ENCFF519QXR.bigBed mm10 released low read length, control low read depth, low read depth ENCFF002BGF fastq reads ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2118567069 Bing Ren, UCSD b36df9a3a3e2c3536dd06b77edec09c3 SRA:SRR3651723 https://www.encodeproject.org/files/ENCFF002BGF/@@download/ENCFF002BGF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002BGY fastq reads ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1800394898 Bing Ren, UCSD fd5db9c428c1cdcfab5133e70ce71319 SRA:SRR3651724 https://www.encodeproject.org/files/ENCFF002BGY/@@download/ENCFF002BGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUV/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF445IGA bam alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGF, ENCFF806TVZ 1388460429 ENCODE Processing Pipeline aeac6e64210c0f9e1792eee05d801201 https://www.encodeproject.org/files/ENCFF445IGA/@@download/ENCFF445IGA.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF237VTB bam alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGY, ENCFF806TVZ 1097615465 ENCODE Processing Pipeline a567f51362d82ba5ee83e06249311a2c https://www.encodeproject.org/files/ENCFF237VTB/@@download/ENCFF237VTB.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF719HXT bed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF237VTB, ENCFF972ZKQ 721939 ENCODE Processing Pipeline 322c1580bb0450450b67cbbe09e86a4b https://www.encodeproject.org/files/ENCFF719HXT/@@download/ENCFF719HXT.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF316LOC bigBed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF217DKP 2008536 ENCODE Processing Pipeline 07c2486e2a1916930f39d5bd996338db https://www.encodeproject.org/files/ENCFF316LOC/@@download/ENCFF316LOC.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF217DKP bed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF237VTB, ENCFF445IGA, ENCFF972ZKQ 616004 ENCODE Processing Pipeline 162628b8975b56ab28597fef061bc1b0 https://www.encodeproject.org/files/ENCFF217DKP/@@download/ENCFF217DKP.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF471YYP bigBed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF771POZ 2226374 ENCODE Processing Pipeline d07557cf4c39439cb1b40e1da4b8d0fb https://www.encodeproject.org/files/ENCFF471YYP/@@download/ENCFF471YYP.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF237FOW bigWig signal p-value ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF237VTB, ENCFF972ZKQ 397305690 ENCODE Processing Pipeline cf67ff2b2deecde023e2227b065fec05 https://www.encodeproject.org/files/ENCFF237FOW/@@download/ENCFF237FOW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF771POZ bed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF445IGA, ENCFF972ZKQ 686139 ENCODE Processing Pipeline 31cf642a01f0f4df5b40cb32ac8e6c9d https://www.encodeproject.org/files/ENCFF771POZ/@@download/ENCFF771POZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF055UJY bigBed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF719HXT 2309674 ENCODE Processing Pipeline 8af92d0479252fe69822f50f20a22f0b https://www.encodeproject.org/files/ENCFF055UJY/@@download/ENCFF055UJY.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF559RKC bigWig signal p-value ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF445IGA, ENCFF972ZKQ 457770253 ENCODE Processing Pipeline 7acd91ac53b73a3dcfedc5cf55ea6491 https://www.encodeproject.org/files/ENCFF559RKC/@@download/ENCFF559RKC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF174BHQ bigWig signal p-value ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF237VTB, ENCFF445IGA, ENCFF972ZKQ 472464207 ENCODE Processing Pipeline 42b563ee8d29865cb5708700bbb05bf8 https://www.encodeproject.org/files/ENCFF174BHQ/@@download/ENCFF174BHQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF151NKS bigWig fold change over control ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF237VTB, ENCFF972ZKQ 395847950 ENCODE Processing Pipeline 25e825d1ebcc3c1e6168ca8509dcb5c7 https://www.encodeproject.org/files/ENCFF151NKS/@@download/ENCFF151NKS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF749DOZ bigWig fold change over control ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF445IGA, ENCFF972ZKQ 446448625 ENCODE Processing Pipeline 188a64a87ec2b98c7f15116e95152d1a https://www.encodeproject.org/files/ENCFF749DOZ/@@download/ENCFF749DOZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF956GIG bigWig fold change over control ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF237VTB, ENCFF445IGA, ENCFF972ZKQ 687309485 ENCODE Processing Pipeline 75c7c8c1ccdf2cc90a2f9d40fa750b35 https://www.encodeproject.org/files/ENCFF956GIG/@@download/ENCFF956GIG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF798NHX bed narrowPeak replicated peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF217DKP, ENCFF719HXT, ENCFF771POZ 809812 ENCODE Processing Pipeline 89359e62c1f577a7acfaf4c55bb66bed https://www.encodeproject.org/files/ENCFF798NHX/@@download/ENCFF798NHX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF135ZHL bigBed narrowPeak replicated peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF798NHX 1933524 ENCODE Processing Pipeline e83dde360e5e79adeae1837d0eb2e88e https://www.encodeproject.org/files/ENCFF135ZHL/@@download/ENCFF135ZHL.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF587BFZ bam unfiltered alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGF, ENCFF018NEO 1914749647 ENCODE Processing Pipeline 6b88f09455052079d95fba0e1da7f0b0 https://www.encodeproject.org/files/ENCFF587BFZ/@@download/ENCFF587BFZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF985NAL bam unfiltered alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGY, ENCFF018NEO 1668399245 ENCODE Processing Pipeline e0bc797f242066d33c1f95cab1a6109c https://www.encodeproject.org/files/ENCFF985NAL/@@download/ENCFF985NAL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF812SUN bam alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGF, ENCFF018NEO 1099597864 ENCODE Processing Pipeline fb0b5066fcb2f8b56ef83467d8acc426 https://www.encodeproject.org/files/ENCFF812SUN/@@download/ENCFF812SUN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF539SEX bam alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGY, ENCFF018NEO 859245865 ENCODE Processing Pipeline ba2eea9cf98d5b7dd97e89a89624e318 https://www.encodeproject.org/files/ENCFF539SEX/@@download/ENCFF539SEX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF317MAJ bed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF539SEX 713156 ENCODE Processing Pipeline 9d372516f98634d5a5df4a0e6375782d https://www.encodeproject.org/files/ENCFF317MAJ/@@download/ENCFF317MAJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF646FEC bed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF539SEX, ENCFF812SUN 643032 ENCODE Processing Pipeline 55186fab6934dd34110a6d948d4ee0c7 https://www.encodeproject.org/files/ENCFF646FEC/@@download/ENCFF646FEC.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF539BYW bigBed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF317MAJ 2266986 ENCODE Processing Pipeline f5738f37e52ee0e94af0b6da07f2f803 https://www.encodeproject.org/files/ENCFF539BYW/@@download/ENCFF539BYW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF659OXF bed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF812SUN 690172 ENCODE Processing Pipeline a7a1f9209e17e739dafced106d4d38a3 https://www.encodeproject.org/files/ENCFF659OXF/@@download/ENCFF659OXF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF997OVF bigBed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF646FEC 2078608 ENCODE Processing Pipeline a101545d6d832103524a2ddb36886b99 https://www.encodeproject.org/files/ENCFF997OVF/@@download/ENCFF997OVF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF374EXS bigBed narrowPeak peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF659OXF 2233390 ENCODE Processing Pipeline 45bbd054e7649e03005c9ad85c0b94ac https://www.encodeproject.org/files/ENCFF374EXS/@@download/ENCFF374EXS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF665HLQ bigWig signal p-value ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF539SEX 348459039 ENCODE Processing Pipeline c9ad46251db15ee2a9d64d1cc6a14e39 https://www.encodeproject.org/files/ENCFF665HLQ/@@download/ENCFF665HLQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF234NDS bigWig signal p-value ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF812SUN 456005063 ENCODE Processing Pipeline 81149ee7f0bbd71af2f71c7a507083b6 https://www.encodeproject.org/files/ENCFF234NDS/@@download/ENCFF234NDS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF848RZP bigWig signal p-value ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF539SEX, ENCFF812SUN 470441116 ENCODE Processing Pipeline 35dafe679350f3023befe5d1d9899727 https://www.encodeproject.org/files/ENCFF848RZP/@@download/ENCFF848RZP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF191HRB bigWig fold change over control ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437LOC, ENCFF468BIZ, ENCFF539SEX 380902635 ENCODE Processing Pipeline b90943e1368c40634204ad65cea08a0f https://www.encodeproject.org/files/ENCFF191HRB/@@download/ENCFF191HRB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF685ICO bigWig fold change over control ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437LOC, ENCFF468BIZ, ENCFF812SUN 439514509 ENCODE Processing Pipeline 93cc647e0297ee33596ed8850dd74207 https://www.encodeproject.org/files/ENCFF685ICO/@@download/ENCFF685ICO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF770WCB bigWig fold change over control ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437LOC, ENCFF468BIZ, ENCFF539SEX, ENCFF812SUN 670887501 ENCODE Processing Pipeline 711d5cfa9e8ca8c7548f20bd7e039394 https://www.encodeproject.org/files/ENCFF770WCB/@@download/ENCFF770WCB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF300MTY bed narrowPeak replicated peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF317MAJ, ENCFF646FEC, ENCFF659OXF 812941 ENCODE Processing Pipeline 8f12d87c9ee25dda7f627c21cb3f8720 https://www.encodeproject.org/files/ENCFF300MTY/@@download/ENCFF300MTY.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF654DDD bigBed narrowPeak replicated peaks ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF300MTY 1932849 ENCODE Processing Pipeline 11ef6848801ecdef33a8ea943f69b7a4 https://www.encodeproject.org/files/ENCFF654DDD/@@download/ENCFF654DDD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF981EXV fastq reads ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2159221114 Bing Ren, UCSD 648981042cb18b7f7bf6eb4503fc51b1 SRA:SRR3651244 https://www.encodeproject.org/files/ENCFF981EXV/@@download/ENCFF981EXV.fastq.gz Illumina HiSeq 2000 /files/ENCFF761WLY/ released mild to moderate bottlenecking, inconsistent platforms ENCFF148FLG fastq reads ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2536385446 Bing Ren, UCSD d5f0d866575f8cca17752f1fe37196e2 SRA:SRR3651243 https://www.encodeproject.org/files/ENCFF148FLG/@@download/ENCFF148FLG.fastq.gz Illumina HiSeq 2000 /files/ENCFF853ZDE/ released mild to moderate bottlenecking, inconsistent platforms ENCFF260YZH bam alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF148FLG, ENCFF806TVZ 1790634895 ENCODE Processing Pipeline 8657f989e036b1b7944d6c78c459ba04 https://www.encodeproject.org/files/ENCFF260YZH/@@download/ENCFF260YZH.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF977JRY bam alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF981EXV 1584812197 ENCODE Processing Pipeline e00bf6d61cb435b7df9d7f8ae5f96038 https://www.encodeproject.org/files/ENCFF977JRY/@@download/ENCFF977JRY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF284IXP bigBed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF499ZDR 1770203 ENCODE Processing Pipeline 67bb229cc71122e7aff60737ed868f44 https://www.encodeproject.org/files/ENCFF284IXP/@@download/ENCFF284IXP.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF005NGN bed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF260YZH, ENCFF309QAZ 547926 ENCODE Processing Pipeline 8487b41898a027045e7dfbe67953742e https://www.encodeproject.org/files/ENCFF005NGN/@@download/ENCFF005NGN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF961JXW bigBed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF005NGN 1790065 ENCODE Processing Pipeline 12bbd71e2c38df1a975b50bcee7a9295 https://www.encodeproject.org/files/ENCFF961JXW/@@download/ENCFF961JXW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF986SNW bigBed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF932LTL 1881956 ENCODE Processing Pipeline 0f7e48ae5e58c0b1ddc1d747750d56b2 https://www.encodeproject.org/files/ENCFF986SNW/@@download/ENCFF986SNW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF499ZDR bed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF977JRY 544364 ENCODE Processing Pipeline d3ce8534fc8b12374d63a14a57a29691 https://www.encodeproject.org/files/ENCFF499ZDR/@@download/ENCFF499ZDR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF932LTL bed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF260YZH, ENCFF309QAZ, ENCFF977JRY 603051 ENCODE Processing Pipeline 659eee90e6beaec927239675b162514d https://www.encodeproject.org/files/ENCFF932LTL/@@download/ENCFF932LTL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF546UXH bigWig signal p-value ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF260YZH, ENCFF309QAZ 546437278 ENCODE Processing Pipeline 25f220fece3a43c25d83c3155c0ff2e8 https://www.encodeproject.org/files/ENCFF546UXH/@@download/ENCFF546UXH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF065YFS bigWig signal p-value ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF977JRY 437318194 ENCODE Processing Pipeline bb81320e5f59e879d1a7a18370eb817d https://www.encodeproject.org/files/ENCFF065YFS/@@download/ENCFF065YFS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF626WDA bigWig fold change over control ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF015ICF, ENCFF977JRY 512397888 ENCODE Processing Pipeline a66530e74df48997a37439ca1995a697 https://www.encodeproject.org/files/ENCFF626WDA/@@download/ENCFF626WDA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF449WVR bigWig signal p-value ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF260YZH, ENCFF309QAZ, ENCFF977JRY 1059053198 ENCODE Processing Pipeline e353afaf478ff7d79705aae09ac3af47 https://www.encodeproject.org/files/ENCFF449WVR/@@download/ENCFF449WVR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF123SOE bigWig fold change over control ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF260YZH, ENCFF309QAZ 613609052 ENCODE Processing Pipeline 2d68ffe9793aa009148131256159c1a4 https://www.encodeproject.org/files/ENCFF123SOE/@@download/ENCFF123SOE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF212MJC bigWig fold change over control ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF015ICF, ENCFF260YZH, ENCFF309QAZ, ENCFF977JRY 1063224385 ENCODE Processing Pipeline a6323550179c0a70f49d83f914beafd6 https://www.encodeproject.org/files/ENCFF212MJC/@@download/ENCFF212MJC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF330ZZE bed narrowPeak replicated peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF005NGN, ENCFF499ZDR, ENCFF932LTL 693089 ENCODE Processing Pipeline eb13ac8edd3c92bf6b13cdd4f4f7af1c https://www.encodeproject.org/files/ENCFF330ZZE/@@download/ENCFF330ZZE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF354DDH bigBed narrowPeak replicated peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF330ZZE 1636152 ENCODE Processing Pipeline 920163e457d6f434534dbcef197b3418 https://www.encodeproject.org/files/ENCFF354DDH/@@download/ENCFF354DDH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF735DSN bam unfiltered alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF148FLG 2839319662 ENCODE Processing Pipeline 20c6c566bfbc11565c1b1b876d190f8c https://www.encodeproject.org/files/ENCFF735DSN/@@download/ENCFF735DSN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF214ZIZ bam unfiltered alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF981EXV 2435116822 ENCODE Processing Pipeline f26a28c224aaac57c448ebd9a659a34b https://www.encodeproject.org/files/ENCFF214ZIZ/@@download/ENCFF214ZIZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF956WIY bam alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF981EXV 1584487596 ENCODE Processing Pipeline b532b4d82d57e7e9baef992e2b8a8d0f https://www.encodeproject.org/files/ENCFF956WIY/@@download/ENCFF956WIY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF102PWG bam alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF148FLG 1790256521 ENCODE Processing Pipeline ee355cc54165ab51308fb4ebfb6b1615 https://www.encodeproject.org/files/ENCFF102PWG/@@download/ENCFF102PWG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF504FTZ bed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF805AXD, ENCFF956WIY 553001 ENCODE Processing Pipeline b201e3ae9b740405b50181f067e78933 https://www.encodeproject.org/files/ENCFF504FTZ/@@download/ENCFF504FTZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF635MRP bed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF102PWG, ENCFF805AXD, ENCFF956WIY 603110 ENCODE Processing Pipeline 4eb7fb02245277faccf97cf3c0330f6c https://www.encodeproject.org/files/ENCFF635MRP/@@download/ENCFF635MRP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF600OEH bed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF102PWG 548741 ENCODE Processing Pipeline 62dc0676f7f91ae4c63e3ce3d4b2ddf1 https://www.encodeproject.org/files/ENCFF600OEH/@@download/ENCFF600OEH.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF283HEW bigBed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF504FTZ 1791711 ENCODE Processing Pipeline f9100494f4d53226d9a49b2cca0dd680 https://www.encodeproject.org/files/ENCFF283HEW/@@download/ENCFF283HEW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF156NKH bigBed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF600OEH 1793214 ENCODE Processing Pipeline d7d7ae7d27524eb4176765471984bb27 https://www.encodeproject.org/files/ENCFF156NKH/@@download/ENCFF156NKH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF824EOK bigBed narrowPeak peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF635MRP 1883251 ENCODE Processing Pipeline c1388fc354c20ef3648f7a5dd77e1e5f https://www.encodeproject.org/files/ENCFF824EOK/@@download/ENCFF824EOK.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF026LPF bigWig signal p-value ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF805AXD, ENCFF956WIY 549577916 ENCODE Processing Pipeline 4e5944042c423e27e051fd2a9736afa9 https://www.encodeproject.org/files/ENCFF026LPF/@@download/ENCFF026LPF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF928BAF bigWig signal p-value ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF102PWG 569132494 ENCODE Processing Pipeline 90cb36c541806d0f66c1faf8363147a0 https://www.encodeproject.org/files/ENCFF928BAF/@@download/ENCFF928BAF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF564UYP bigWig signal p-value ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF102PWG, ENCFF805AXD, ENCFF956WIY 861062109 ENCODE Processing Pipeline 79dc90afe5a33ef82e8b41bba79454a4 https://www.encodeproject.org/files/ENCFF564UYP/@@download/ENCFF564UYP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF679QDA bigWig fold change over control ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF805AXD, ENCFF956WIY 574666932 ENCODE Processing Pipeline 32cce2476230b43cf35bde2c6a1b0832 https://www.encodeproject.org/files/ENCFF679QDA/@@download/ENCFF679QDA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF509AVK bigWig fold change over control ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF098HSW, ENCFF102PWG 614128518 ENCODE Processing Pipeline 5bae8733ec2753553152fdef037dec13 https://www.encodeproject.org/files/ENCFF509AVK/@@download/ENCFF509AVK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF030BTL bigWig fold change over control ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098HSW, ENCFF102PWG, ENCFF805AXD, ENCFF956WIY 1065920858 ENCODE Processing Pipeline 563b24c5094856858127cdd27cb69c3b https://www.encodeproject.org/files/ENCFF030BTL/@@download/ENCFF030BTL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF655LTM bigBed narrowPeak replicated peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF532MDF 1638071 ENCODE Processing Pipeline 3c5273be96b84bb54888158b66cf218f https://www.encodeproject.org/files/ENCFF655LTM/@@download/ENCFF655LTM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF532MDF bed narrowPeak replicated peaks ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF504FTZ, ENCFF600OEH, ENCFF635MRP 689519 ENCODE Processing Pipeline e5d9ea4457ea0ef8f9f2b23085e8a248 https://www.encodeproject.org/files/ENCFF532MDF/@@download/ENCFF532MDF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001JVZ bam alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JWH 546720336 Bing Ren, UCSD 1e2e77ed872498612fcd706a377b5a60 https://www.encodeproject.org/files/ENCFF001JVZ/@@download/ENCFF001JVZ.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF001JWA bigBed broadPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XVP 388878 Bing Ren, UCSD 418b3d928b9f4e6ac82790189bf6612f https://www.encodeproject.org/files/ENCFF001JWA/@@download/ENCFF001JWA.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF001JWB bam alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JWJ 581824355 Bing Ren, UCSD d8be377d9cf0bf8c7fdf0e2f765b0e92 https://www.encodeproject.org/files/ENCFF001JWB/@@download/ENCFF001JWB.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF001JWD bigWig signal ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JVZ, ENCFF001JWB 21863495 Bing Ren, UCSD 59704b0167b6e8fcf989a067fcdb7e75 https://www.encodeproject.org/files/ENCFF001JWD/@@download/ENCFF001JWD.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF001JWH fastq reads ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 583112721 Bing Ren, UCSD d7af81c1192b10d14df6375ec7a1c2b5 https://www.encodeproject.org/files/ENCFF001JWH/@@download/ENCFF001JWH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JWW/ released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF001JWJ fastq reads ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 594043639 Bing Ren, UCSD ba9c0e7b239fffb80bd7f724d7263dc2 https://www.encodeproject.org/files/ENCFF001JWJ/@@download/ENCFF001JWJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JWV/ released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF001XVP bed broadPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JVZ, ENCFF001JWB 267713 Bing Ren, UCSD e09b11c2f753844462a05d2fb274eb2c https://www.encodeproject.org/files/ENCFF001XVP/@@download/ENCFF001XVP.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF122FBR bam unfiltered alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWH, ENCFF018NEO 560773518 ENCODE Processing Pipeline 8da59c81268e56d88011b3d75229fdea https://www.encodeproject.org/files/ENCFF122FBR/@@download/ENCFF122FBR.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF327HNH bam unfiltered alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWJ, ENCFF018NEO 610338456 ENCODE Processing Pipeline 4b0b76870a728be005fd01a7d25b24bc https://www.encodeproject.org/files/ENCFF327HNH/@@download/ENCFF327HNH.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF480JRT bam alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWH, ENCFF018NEO 345870099 ENCODE Processing Pipeline 45beb3c04b2d13ec3d2d4d50db5931f4 https://www.encodeproject.org/files/ENCFF480JRT/@@download/ENCFF480JRT.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF593PYF bam alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWJ, ENCFF018NEO 403551358 ENCODE Processing Pipeline cca9778b3cb9f6e5aaaaccbde210477c https://www.encodeproject.org/files/ENCFF593PYF/@@download/ENCFF593PYF.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF868XOC bed narrowPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF310NCX, ENCFF593PYF, ENCFF758PYU 991392 ENCODE Processing Pipeline 8212997e04907612022ae12bf0208ef8 https://www.encodeproject.org/files/ENCFF868XOC/@@download/ENCFF868XOC.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF460CGI bigBed narrowPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF719DTO 2792083 ENCODE Processing Pipeline 06f532d2921c15012589162144ce3047 https://www.encodeproject.org/files/ENCFF460CGI/@@download/ENCFF460CGI.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF583LNP bigWig signal p-value ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF310NCX, ENCFF480JRT, ENCFF758PYU 391460406 ENCODE Processing Pipeline b12c6962c8761c509a1652b9ae59c207 https://www.encodeproject.org/files/ENCFF583LNP/@@download/ENCFF583LNP.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF738BJQ bigWig signal p-value ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF310NCX, ENCFF593PYF, ENCFF758PYU 408150818 ENCODE Processing Pipeline 972351e6d27133e3f13c5b711acd834b https://www.encodeproject.org/files/ENCFF738BJQ/@@download/ENCFF738BJQ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF140KFK bigBed narrowPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF868XOC 2755852 ENCODE Processing Pipeline a6540104c1879fea6e78e544277f623b https://www.encodeproject.org/files/ENCFF140KFK/@@download/ENCFF140KFK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF628EOR bigBed narrowPeak replicated peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF547KPS 2198112 ENCODE Processing Pipeline 8769e3d9bc3634ed344296c2429bb5b0 https://www.encodeproject.org/files/ENCFF628EOR/@@download/ENCFF628EOR.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF309CGH bigWig signal p-value ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF310NCX, ENCFF480JRT, ENCFF593PYF, ENCFF758PYU 424420426 ENCODE Processing Pipeline 24b12af6ce88c6264894cc182160e1cb https://www.encodeproject.org/files/ENCFF309CGH/@@download/ENCFF309CGH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF341HDY bed narrowPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF310NCX, ENCFF480JRT, ENCFF758PYU 906449 ENCODE Processing Pipeline fecd57c512d5e381f0e65cd374652f0c https://www.encodeproject.org/files/ENCFF341HDY/@@download/ENCFF341HDY.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF719DTO bed narrowPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF310NCX, ENCFF480JRT, ENCFF593PYF, ENCFF758PYU 1046732 ENCODE Processing Pipeline 1c17515b582167771197375c79bfa766 https://www.encodeproject.org/files/ENCFF719DTO/@@download/ENCFF719DTO.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF794TSW bigBed narrowPeak peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF341HDY 2513644 ENCODE Processing Pipeline 6a6d842d12a4d233895b1df156c21b00 https://www.encodeproject.org/files/ENCFF794TSW/@@download/ENCFF794TSW.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF826MMA bigWig fold change over control ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF310NCX, ENCFF480JRT, ENCFF758PYU 168452405 ENCODE Processing Pipeline e8effc687894981d2230baa4415399e3 https://www.encodeproject.org/files/ENCFF826MMA/@@download/ENCFF826MMA.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF547KPS bed narrowPeak replicated peaks ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF341HDY, ENCFF719DTO, ENCFF868XOC 1076604 ENCODE Processing Pipeline bdabfadd00177f1d9d0022d28dd42293 https://www.encodeproject.org/files/ENCFF547KPS/@@download/ENCFF547KPS.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF539RIZ bigWig fold change over control ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF310NCX, ENCFF593PYF, ENCFF758PYU 214163467 ENCODE Processing Pipeline dd75221ed0b692dba15b6e5f481c5142 https://www.encodeproject.org/files/ENCFF539RIZ/@@download/ENCFF539RIZ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF966UOI bigWig fold change over control ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF310NCX, ENCFF480JRT, ENCFF593PYF, ENCFF758PYU 307664406 ENCODE Processing Pipeline abc3a23322d2f03fb8cf3a0421fce015 https://www.encodeproject.org/files/ENCFF966UOI/@@download/ENCFF966UOI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF002AIH fastq reads ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1224522173 Bing Ren, UCSD 0a5339e6a5b8395ab8e87d2a70062a9c SRA:SRR3652481 https://www.encodeproject.org/files/ENCFF002AIH/@@download/ENCFF002AIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released mild to moderate bottlenecking, mixed read lengths, control low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AIP fastq reads ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1926510055 Bing Ren, UCSD 8603d72bc2e8709ef74d7971a650064a SRA:SRR3652483 https://www.encodeproject.org/files/ENCFF002AIP/@@download/ENCFF002AIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQN/ released mild to moderate bottlenecking, mixed read lengths, control low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF325MBO fastq reads ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 208514896 Bing Ren, UCSD 6a16028dd33cf022ff5d324b5bda47ed SRA:SRR3652482 https://www.encodeproject.org/files/ENCFF325MBO/@@download/ENCFF325MBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF445FEB fastq reads ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 849512593 Bing Ren, UCSD 33e537683cdbe2823f29e0ca03380bff SRA:SRR3652484 https://www.encodeproject.org/files/ENCFF445FEB/@@download/ENCFF445FEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQN/ released mild to moderate bottlenecking, mixed read lengths, control low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF732CKY bam alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIP, ENCFF445FEB, ENCFF806TVZ 1237024041 ENCODE Processing Pipeline e9e48eb9d268de6b6fa0b227bcf78565 https://www.encodeproject.org/files/ENCFF732CKY/@@download/ENCFF732CKY.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF442VXF bam alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIH, ENCFF325MBO, ENCFF806TVZ 1131089960 ENCODE Processing Pipeline 7eadebc33dedf30f9027dc6851858739 https://www.encodeproject.org/files/ENCFF442VXF/@@download/ENCFF442VXF.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF911MYG bed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF442VXF, ENCFF576KAS, ENCFF732CKY 2840636 ENCODE Processing Pipeline 9d3dbd032bb3accbdc8d544df2a366a1 https://www.encodeproject.org/files/ENCFF911MYG/@@download/ENCFF911MYG.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF683BYC bed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF732CKY 3217712 ENCODE Processing Pipeline 23be295183e9c44894f0b269f6016c71 https://www.encodeproject.org/files/ENCFF683BYC/@@download/ENCFF683BYC.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF788ELJ bigBed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF911MYG 6104937 ENCODE Processing Pipeline c5b823749fd632818be6f147c50448c1 https://www.encodeproject.org/files/ENCFF788ELJ/@@download/ENCFF788ELJ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF222GLC bigWig signal p-value ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF442VXF, ENCFF576KAS 514023557 ENCODE Processing Pipeline a397d84ff54bac731ff14b1ce54ca9ce https://www.encodeproject.org/files/ENCFF222GLC/@@download/ENCFF222GLC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF472FOH bigBed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF739IGL 3369945 ENCODE Processing Pipeline ece0f5ef203485850fb582b5c8e1e729 https://www.encodeproject.org/files/ENCFF472FOH/@@download/ENCFF472FOH.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF587NOU bigBed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF683BYC 6977318 ENCODE Processing Pipeline b189f04bc85a9ce61ebd24c9a8021bbd https://www.encodeproject.org/files/ENCFF587NOU/@@download/ENCFF587NOU.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF739IGL bed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF442VXF, ENCFF576KAS 1910009 ENCODE Processing Pipeline 65e5a15a15d1b91e6a37b3c9eae75901 https://www.encodeproject.org/files/ENCFF739IGL/@@download/ENCFF739IGL.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF611LNN bigWig signal p-value ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF732CKY 578575146 ENCODE Processing Pipeline 04605cbb8d49a828e5bb66b5386472ea https://www.encodeproject.org/files/ENCFF611LNN/@@download/ENCFF611LNN.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF808MEW bigWig signal p-value ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF442VXF, ENCFF576KAS, ENCFF732CKY 792871012 ENCODE Processing Pipeline 48136cd9370349fd3c7223535763c54f https://www.encodeproject.org/files/ENCFF808MEW/@@download/ENCFF808MEW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF383XEU bigWig fold change over control ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF442VXF, ENCFF576KAS 522331887 ENCODE Processing Pipeline fbe569c99f89deddc26c24e27cad10d4 https://www.encodeproject.org/files/ENCFF383XEU/@@download/ENCFF383XEU.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF385KBG bigWig fold change over control ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF362MXD, ENCFF576KAS, ENCFF732CKY 485758532 ENCODE Processing Pipeline 7b64bcc554e2371153d5848187eb3edf https://www.encodeproject.org/files/ENCFF385KBG/@@download/ENCFF385KBG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF247FWC bigWig fold change over control ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF442VXF, ENCFF576KAS, ENCFF732CKY 802800687 ENCODE Processing Pipeline bfd82282da3ea97517604b9eaf90ba33 https://www.encodeproject.org/files/ENCFF247FWC/@@download/ENCFF247FWC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF496DIM bed narrowPeak replicated peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF683BYC, ENCFF739IGL, ENCFF911MYG 2071780 ENCODE Processing Pipeline c5769a43d2aa7f6fc9b71361fce39274 https://www.encodeproject.org/files/ENCFF496DIM/@@download/ENCFF496DIM.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF030ECP bigBed narrowPeak replicated peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF496DIM 3838939 ENCODE Processing Pipeline ce2c225c700e59014131365a1a73b935 https://www.encodeproject.org/files/ENCFF030ECP/@@download/ENCFF030ECP.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF750YSJ bam unfiltered alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIH, ENCFF018NEO, ENCFF325MBO 1559253775 ENCODE Processing Pipeline c5724ecbb963185c9c6894bd2ac65c2d https://www.encodeproject.org/files/ENCFF750YSJ/@@download/ENCFF750YSJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF966EAF bam unfiltered alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIP, ENCFF018NEO, ENCFF445FEB 2329936194 ENCODE Processing Pipeline 59782559777dedcb23a67af22d0cf1f7 https://www.encodeproject.org/files/ENCFF966EAF/@@download/ENCFF966EAF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF323VNH bam alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIH, ENCFF018NEO, ENCFF325MBO 1072946584 ENCODE Processing Pipeline de5811151b0e3b68465d91f15cd8098a https://www.encodeproject.org/files/ENCFF323VNH/@@download/ENCFF323VNH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF956RMP bam alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIP, ENCFF018NEO, ENCFF445FEB 958260885 ENCODE Processing Pipeline 02c60bbe3bc83cfed618fe8a01b70836 https://www.encodeproject.org/files/ENCFF956RMP/@@download/ENCFF956RMP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF389JFE bed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF956RMP 2476253 ENCODE Processing Pipeline 9fe5d13c342d3db9eaec17c03ff729f6 https://www.encodeproject.org/files/ENCFF389JFE/@@download/ENCFF389JFE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF948TXD bigBed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF389JFE 5461131 ENCODE Processing Pipeline ff1da6ee9fbf40e95b54d944b8436a5c https://www.encodeproject.org/files/ENCFF948TXD/@@download/ENCFF948TXD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF434IRH bigWig signal p-value ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF956RMP 377688356 ENCODE Processing Pipeline 3ce5c4903401e602c3e822f3701de094 https://www.encodeproject.org/files/ENCFF434IRH/@@download/ENCFF434IRH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF467MSN bigWig fold change over control ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF956RMP 366099637 ENCODE Processing Pipeline 0c68b0c2e893bf50f925029d7fd1a335 https://www.encodeproject.org/files/ENCFF467MSN/@@download/ENCFF467MSN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF514GMY bed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF323VNH 1817797 ENCODE Processing Pipeline 5d6bdee902f2fb6309ffbe0e9ed611a6 https://www.encodeproject.org/files/ENCFF514GMY/@@download/ENCFF514GMY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF958OVG bed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF323VNH, ENCFF956RMP 2552290 ENCODE Processing Pipeline 0144377c76abb5721b13bbd565e4cd75 https://www.encodeproject.org/files/ENCFF958OVG/@@download/ENCFF958OVG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF492GFJ bigBed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF958OVG 5556084 ENCODE Processing Pipeline 47d361f7bda52c3a306312da945cc3bb https://www.encodeproject.org/files/ENCFF492GFJ/@@download/ENCFF492GFJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF905GMF bigBed narrowPeak peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF514GMY 3229210 ENCODE Processing Pipeline 593efd4e680e2af9ee2ed81039da7f65 https://www.encodeproject.org/files/ENCFF905GMF/@@download/ENCFF905GMF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF186BBR bigWig signal p-value ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF323VNH 495445344 ENCODE Processing Pipeline 792beaf4b8a047cc327079cff487913c https://www.encodeproject.org/files/ENCFF186BBR/@@download/ENCFF186BBR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF331LKU bigWig fold change over control ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255MPO, ENCFF304BRA, ENCFF323VNH 486702279 ENCODE Processing Pipeline 8d93850793167526630512a6a7c01190 https://www.encodeproject.org/files/ENCFF331LKU/@@download/ENCFF331LKU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF743CBP bigWig signal p-value ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF323VNH, ENCFF956RMP 765260797 ENCODE Processing Pipeline 7c1322b3ca9856629e25116541a39092 https://www.encodeproject.org/files/ENCFF743CBP/@@download/ENCFF743CBP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF450GMP bigWig fold change over control ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255MPO, ENCFF304BRA, ENCFF323VNH, ENCFF956RMP 793077079 ENCODE Processing Pipeline 081b8d1f87bb19bb42f42aaa581bf21e https://www.encodeproject.org/files/ENCFF450GMP/@@download/ENCFF450GMP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF861TUC bed narrowPeak replicated peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF389JFE, ENCFF514GMY, ENCFF958OVG 1980022 ENCODE Processing Pipeline 1686c38349273d00284a74c6f076a792 https://www.encodeproject.org/files/ENCFF861TUC/@@download/ENCFF861TUC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF057JUC bigBed narrowPeak replicated peaks ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF861TUC 3711773 ENCODE Processing Pipeline 073bfedb1330ee36994d6ac53f1921b9 https://www.encodeproject.org/files/ENCFF057JUC/@@download/ENCFF057JUC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZSW fastq reads ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 983650568 Bing Ren, UCSD ea25d254266c0e4971d61e833aa49039 SRA:SRR3651859 https://www.encodeproject.org/files/ENCFF001ZSW/@@download/ENCFF001ZSW.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001ZTN fastq reads ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 867767801 Bing Ren, UCSD 2235bbaadb03845d7c9b7ac7fc798d29 SRA:SRR3651860 https://www.encodeproject.org/files/ENCFF001ZTN/@@download/ENCFF001ZTN.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, mild to moderate bottlenecking, low read depth ENCFF634YHW bam alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTN, ENCFF806TVZ 617925511 ENCODE Processing Pipeline 5090fb3155b4f9bfb8de420faefb6d18 https://www.encodeproject.org/files/ENCFF634YHW/@@download/ENCFF634YHW.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF982OPJ bam alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSW, ENCFF806TVZ 689712209 ENCODE Processing Pipeline 9d366a9620af0579d989655df4efefd1 https://www.encodeproject.org/files/ENCFF982OPJ/@@download/ENCFF982OPJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF094WHF bed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF634YHW, ENCFF656MYX, ENCFF844PWX, ENCFF982OPJ 675617 ENCODE Processing Pipeline 859a03fba4d8b5d5e2494dba538e3aa5 https://www.encodeproject.org/files/ENCFF094WHF/@@download/ENCFF094WHF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF008SPF bigBed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF715BHK 2340538 ENCODE Processing Pipeline b22fbaaf450a8b3c4c0c7c7d53acb632 https://www.encodeproject.org/files/ENCFF008SPF/@@download/ENCFF008SPF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF361MUD bigBed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF322ZZX 2283750 ENCODE Processing Pipeline 51109a6073ad562ef559fc823fc37021 https://www.encodeproject.org/files/ENCFF361MUD/@@download/ENCFF361MUD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF715BHK bed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF656MYX, ENCFF844PWX, ENCFF982OPJ 742713 ENCODE Processing Pipeline d189e1019b4bb190d55ca154fc4f52fb https://www.encodeproject.org/files/ENCFF715BHK/@@download/ENCFF715BHK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF322ZZX bed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF634YHW, ENCFF656MYX, ENCFF844PWX 905455 ENCODE Processing Pipeline fe0aba0f9cb6b65b9e97493bc1344db3 https://www.encodeproject.org/files/ENCFF322ZZX/@@download/ENCFF322ZZX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF196PPX bigBed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF094WHF 2146309 ENCODE Processing Pipeline 6f6218bfc8891fafb625664be217fd52 https://www.encodeproject.org/files/ENCFF196PPX/@@download/ENCFF196PPX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF694QAU bigWig signal p-value ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF656MYX, ENCFF844PWX, ENCFF982OPJ 337305406 ENCODE Processing Pipeline 68c559f29734e1d916d9eacf3342af6e https://www.encodeproject.org/files/ENCFF694QAU/@@download/ENCFF694QAU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF205DBV bigWig signal p-value ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF634YHW, ENCFF656MYX, ENCFF844PWX 389063230 ENCODE Processing Pipeline e97a76427ee3e3b8fe2dbe450daf1c2c https://www.encodeproject.org/files/ENCFF205DBV/@@download/ENCFF205DBV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF694POR bigWig signal p-value ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF634YHW, ENCFF656MYX, ENCFF844PWX, ENCFF982OPJ 504711215 ENCODE Processing Pipeline 460de244d1d4ddcee7d0cc80bb7f5556 https://www.encodeproject.org/files/ENCFF694POR/@@download/ENCFF694POR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF350YYV bigWig fold change over control ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF656MYX, ENCFF844PWX, ENCFF982OPJ 312598269 ENCODE Processing Pipeline f8d9a598be73a2cabe52189d0e9ac49b https://www.encodeproject.org/files/ENCFF350YYV/@@download/ENCFF350YYV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF176UEZ bigWig fold change over control ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF634YHW, ENCFF656MYX, ENCFF844PWX 276545265 ENCODE Processing Pipeline b9cae683d3a26eedf592fa534f90ca22 https://www.encodeproject.org/files/ENCFF176UEZ/@@download/ENCFF176UEZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF247RWM bed narrowPeak replicated peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF094WHF, ENCFF322ZZX, ENCFF715BHK 745495 ENCODE Processing Pipeline 0957cf0c3440019492c395eee5932888 https://www.encodeproject.org/files/ENCFF247RWM/@@download/ENCFF247RWM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF922OAO bigBed narrowPeak replicated peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF247RWM 1795398 ENCODE Processing Pipeline ff5029fe1526f30ff56f659727314c28 https://www.encodeproject.org/files/ENCFF922OAO/@@download/ENCFF922OAO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF497OEN bigWig fold change over control ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF634YHW, ENCFF656MYX, ENCFF844PWX, ENCFF982OPJ 497708176 ENCODE Processing Pipeline 5dbcbe62ef553d729a71e12a9fb2c711 https://www.encodeproject.org/files/ENCFF497OEN/@@download/ENCFF497OEN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF463BWF bam unfiltered alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSW, ENCFF018NEO 1208651080 ENCODE Processing Pipeline 0b0cd0da90cad391b76ca9dbf4e39a56 https://www.encodeproject.org/files/ENCFF463BWF/@@download/ENCFF463BWF.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF423FQQ bam unfiltered alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTN, ENCFF018NEO 1070091188 ENCODE Processing Pipeline ff44387f693bc5af74b66d3a59252c4f https://www.encodeproject.org/files/ENCFF423FQQ/@@download/ENCFF423FQQ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF153JVH bam alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSW, ENCFF018NEO 689554942 ENCODE Processing Pipeline cc203ce178d731d75e384e020378f174 https://www.encodeproject.org/files/ENCFF153JVH/@@download/ENCFF153JVH.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF413ARE bam alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTN, ENCFF018NEO 617759062 ENCODE Processing Pipeline 33f151d59fe85ecf2ac48cc9dbc9d4bb https://www.encodeproject.org/files/ENCFF413ARE/@@download/ENCFF413ARE.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF887WFQ bed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF153JVH, ENCFF627JLU 743493 ENCODE Processing Pipeline 28e4c5a476b1b53f13d770fe2863d3f4 https://www.encodeproject.org/files/ENCFF887WFQ/@@download/ENCFF887WFQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF471KHS bed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF413ARE, ENCFF627JLU 905523 ENCODE Processing Pipeline e7b6d3af4049ec5647eebc40b2ca38db https://www.encodeproject.org/files/ENCFF471KHS/@@download/ENCFF471KHS.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF131KFA bed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF153JVH, ENCFF413ARE, ENCFF627JLU 676137 ENCODE Processing Pipeline a4608e2ab35b31439e44988c5040ef05 https://www.encodeproject.org/files/ENCFF131KFA/@@download/ENCFF131KFA.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF200TQR bigBed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF887WFQ 2342550 ENCODE Processing Pipeline a94cb212623dfe664ae6b79198ed3080 https://www.encodeproject.org/files/ENCFF200TQR/@@download/ENCFF200TQR.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF882YOJ bigBed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF471KHS 2284845 ENCODE Processing Pipeline 2a39219323e81810a85f909437afea17 https://www.encodeproject.org/files/ENCFF882YOJ/@@download/ENCFF882YOJ.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF947FZZ bigBed narrowPeak peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF131KFA 2148933 ENCODE Processing Pipeline 67e8e78cbdffb0de83582a97142896ed https://www.encodeproject.org/files/ENCFF947FZZ/@@download/ENCFF947FZZ.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF007DRW bigWig signal p-value ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF153JVH, ENCFF627JLU 410722069 ENCODE Processing Pipeline 58c786184dd359d3bb57b8555ce1bbd5 https://www.encodeproject.org/files/ENCFF007DRW/@@download/ENCFF007DRW.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF613RKV bigWig signal p-value ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF413ARE, ENCFF627JLU 334209296 ENCODE Processing Pipeline b5f903e24a78f2f53c339377af62e333 https://www.encodeproject.org/files/ENCFF613RKV/@@download/ENCFF613RKV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF010AAC bigWig signal p-value ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF153JVH, ENCFF413ARE, ENCFF627JLU 504806668 ENCODE Processing Pipeline 28afff6e658b27655eeb13ac83a02058 https://www.encodeproject.org/files/ENCFF010AAC/@@download/ENCFF010AAC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF104QUB bigWig fold change over control ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF153JVH, ENCFF627JLU 310160397 ENCODE Processing Pipeline ea02f99fb2049e1da1fd472a6fc0bd75 https://www.encodeproject.org/files/ENCFF104QUB/@@download/ENCFF104QUB.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF193YXI bigWig fold change over control ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF413ARE, ENCFF627JLU 275530866 ENCODE Processing Pipeline 0bd7d87845a658861ad0d3dc3781658a https://www.encodeproject.org/files/ENCFF193YXI/@@download/ENCFF193YXI.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF768DOK bigWig fold change over control ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF153JVH, ENCFF413ARE, ENCFF627JLU 498220113 ENCODE Processing Pipeline 22b1d41a8ff65f36be956d1a9f2705eb https://www.encodeproject.org/files/ENCFF768DOK/@@download/ENCFF768DOK.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF171AAD bed narrowPeak replicated peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF131KFA, ENCFF471KHS, ENCFF887WFQ 749734 ENCODE Processing Pipeline b2b882d48856c316ff1ec1fd7221fa8d https://www.encodeproject.org/files/ENCFF171AAD/@@download/ENCFF171AAD.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF053HBC bigBed narrowPeak replicated peaks ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF171AAD 1804487 ENCODE Processing Pipeline c8b7625d08db3c16d1cbef08a66017ec https://www.encodeproject.org/files/ENCFF053HBC/@@download/ENCFF053HBC.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF002ANO fastq reads ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 797259389 Bing Ren, UCSD 4992c25e3f40a8d8480defacb2502f0b SRA:SRR3652093 https://www.encodeproject.org/files/ENCFF002ANO/@@download/ENCFF002ANO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARJ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002ANP fastq reads ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 2718288674 Bing Ren, UCSD cca49e2ff37206f79bf8336ae471c1f6 SRA:SRR3652092 https://www.encodeproject.org/files/ENCFF002ANP/@@download/ENCFF002ANP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARK/ released low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF211VLR bam alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANP, ENCFF806TVZ 1456061022 ENCODE Processing Pipeline aa8e2021b2fe65bff29753ef18316597 https://www.encodeproject.org/files/ENCFF211VLR/@@download/ENCFF211VLR.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF454DNJ bam alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANO, ENCFF806TVZ 542721940 ENCODE Processing Pipeline b53dedcea130681f5f666c99be6ef4ea https://www.encodeproject.org/files/ENCFF454DNJ/@@download/ENCFF454DNJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF493ZNP bed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF454DNJ, ENCFF934LFS 446817 ENCODE Processing Pipeline 6ab110a4f7af532d4243c257d0cb9dad https://www.encodeproject.org/files/ENCFF493ZNP/@@download/ENCFF493ZNP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF638QYI bed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF211VLR, ENCFF444YOE, ENCFF454DNJ, ENCFF934LFS 496547 ENCODE Processing Pipeline d4de6d10e0c1449d3f7968b8036b4cb5 https://www.encodeproject.org/files/ENCFF638QYI/@@download/ENCFF638QYI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF379ITR bigBed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF638QYI 1670917 ENCODE Processing Pipeline eb649d9740bb07f44f67ba48d69ef1c4 https://www.encodeproject.org/files/ENCFF379ITR/@@download/ENCFF379ITR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF357PHZ bed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF211VLR, ENCFF444YOE, ENCFF934LFS 500617 ENCODE Processing Pipeline a687db200d28ecddd0531c95aba4827d https://www.encodeproject.org/files/ENCFF357PHZ/@@download/ENCFF357PHZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF538TED bigBed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF357PHZ 1688204 ENCODE Processing Pipeline 5fb686fee67200e4f8473dbb5705fba4 https://www.encodeproject.org/files/ENCFF538TED/@@download/ENCFF538TED.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF772YMP bigBed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF493ZNP 1524314 ENCODE Processing Pipeline ae10b3ddd27babbfe636576066ce10a8 https://www.encodeproject.org/files/ENCFF772YMP/@@download/ENCFF772YMP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF918SQG bigWig signal p-value ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF211VLR, ENCFF444YOE, ENCFF934LFS 500559996 ENCODE Processing Pipeline bd24aced86658bdb93f242883179537f https://www.encodeproject.org/files/ENCFF918SQG/@@download/ENCFF918SQG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF425EWO bigWig signal p-value ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF454DNJ, ENCFF934LFS 299184909 ENCODE Processing Pipeline 59f585c3058c2ead21e79c0106a96e79 https://www.encodeproject.org/files/ENCFF425EWO/@@download/ENCFF425EWO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF002XDD bigWig signal p-value ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF211VLR, ENCFF444YOE, ENCFF454DNJ, ENCFF934LFS 631920113 ENCODE Processing Pipeline 46fa9c007977cce9d8d0760d9f78cad5 https://www.encodeproject.org/files/ENCFF002XDD/@@download/ENCFF002XDD.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF099LAL bigWig fold change over control ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF211VLR, ENCFF444YOE, ENCFF934LFS 506846567 ENCODE Processing Pipeline e1ef5dda9a33a3c84d2cff9715537021 https://www.encodeproject.org/files/ENCFF099LAL/@@download/ENCFF099LAL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF992FVJ bigWig fold change over control ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF454DNJ, ENCFF934LFS 271556180 ENCODE Processing Pipeline 3931c7578368933cc58ae73594c3f240 https://www.encodeproject.org/files/ENCFF992FVJ/@@download/ENCFF992FVJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF998OBA bigWig fold change over control ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF211VLR, ENCFF444YOE, ENCFF454DNJ, ENCFF934LFS 635971760 ENCODE Processing Pipeline 1c59bf8b0aa7a9daefa331216b465fc3 https://www.encodeproject.org/files/ENCFF998OBA/@@download/ENCFF998OBA.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF746QGF bed narrowPeak replicated peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF357PHZ, ENCFF493ZNP, ENCFF638QYI 578805 ENCODE Processing Pipeline e409622abd5e53ab7a473edc78ce4d58 https://www.encodeproject.org/files/ENCFF746QGF/@@download/ENCFF746QGF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF228QUT bigBed narrowPeak replicated peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF746QGF 1483410 ENCODE Processing Pipeline 2d9a2b360cdd14e9c371fcf386a4379d https://www.encodeproject.org/files/ENCFF228QUT/@@download/ENCFF228QUT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF652TVZ bam unfiltered alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANO, ENCFF018NEO 831198608 ENCODE Processing Pipeline 9a97a03193be5a96ab71af16ddf648aa https://www.encodeproject.org/files/ENCFF652TVZ/@@download/ENCFF652TVZ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF120ZIL bam alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANO, ENCFF018NEO 542520568 ENCODE Processing Pipeline 7f360818d06d8a831e5a99c59ede70c2 https://www.encodeproject.org/files/ENCFF120ZIL/@@download/ENCFF120ZIL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF241ESS bam unfiltered alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANP, ENCFF018NEO 2677904237 ENCODE Processing Pipeline 7584633af64b886e814b9f857dcf0e7b https://www.encodeproject.org/files/ENCFF241ESS/@@download/ENCFF241ESS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF191GQW bam alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANP, ENCFF018NEO 1455675238 ENCODE Processing Pipeline 00fe54406bee27b4d7bf54ca1c02afd7 https://www.encodeproject.org/files/ENCFF191GQW/@@download/ENCFF191GQW.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF271MPA bigBed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF770SEL 1645324 ENCODE Processing Pipeline ab2b2b15c6887fc256a940752f7b58e8 https://www.encodeproject.org/files/ENCFF271MPA/@@download/ENCFF271MPA.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF979NSV bigBed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF981GGU 1527483 ENCODE Processing Pipeline dda8b3bfe61661fe883038a60d2ccd3a https://www.encodeproject.org/files/ENCFF979NSV/@@download/ENCFF979NSV.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF767UZO bed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF191GQW, ENCFF319PHE, ENCFF681SBF 507231 ENCODE Processing Pipeline 6cde29a309f1093b58703c1748eee39c https://www.encodeproject.org/files/ENCFF767UZO/@@download/ENCFF767UZO.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF770SEL bed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF120ZIL, ENCFF191GQW, ENCFF319PHE, ENCFF681SBF 489701 ENCODE Processing Pipeline 2fb101d1c03e50b9d12acb37a0a48461 https://www.encodeproject.org/files/ENCFF770SEL/@@download/ENCFF770SEL.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF630XMB bigBed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF767UZO 1704739 ENCODE Processing Pipeline b42894e9acae6f0660350e4fd7d0d459 https://www.encodeproject.org/files/ENCFF630XMB/@@download/ENCFF630XMB.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF981GGU bed narrowPeak peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF120ZIL, ENCFF319PHE, ENCFF681SBF 445073 ENCODE Processing Pipeline 17d3c6d69d656d08bbf63e725046efcb https://www.encodeproject.org/files/ENCFF981GGU/@@download/ENCFF981GGU.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF330MHU bigWig signal p-value ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF191GQW, ENCFF319PHE, ENCFF681SBF 546985807 ENCODE Processing Pipeline e1af69f1ad6e4ba95b38a22ce0d1aa04 https://www.encodeproject.org/files/ENCFF330MHU/@@download/ENCFF330MHU.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF327BEM bigWig signal p-value ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF120ZIL, ENCFF319PHE, ENCFF681SBF 377682600 ENCODE Processing Pipeline 20c908899fdaded53053b2ff2d7a6d12 https://www.encodeproject.org/files/ENCFF327BEM/@@download/ENCFF327BEM.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF284YTS bigWig signal p-value ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF120ZIL, ENCFF191GQW, ENCFF319PHE, ENCFF681SBF 696023496 ENCODE Processing Pipeline 93011592ee078e2d59e30a63958dd90a https://www.encodeproject.org/files/ENCFF284YTS/@@download/ENCFF284YTS.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF681LCV bigWig fold change over control ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF191GQW, ENCFF319PHE, ENCFF681SBF 561424870 ENCODE Processing Pipeline 01d19110380f947b5780a9aec6abb736 https://www.encodeproject.org/files/ENCFF681LCV/@@download/ENCFF681LCV.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF166PRQ bigWig fold change over control ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF120ZIL, ENCFF319PHE, ENCFF681SBF 293913732 ENCODE Processing Pipeline 8d72205a7930eb19be3b6e3cc4b3af71 https://www.encodeproject.org/files/ENCFF166PRQ/@@download/ENCFF166PRQ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF339HOE bigWig fold change over control ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF120ZIL, ENCFF191GQW, ENCFF319PHE, ENCFF681SBF 700075770 ENCODE Processing Pipeline 12426f765c2e1db4fd648a5eaea02e56 https://www.encodeproject.org/files/ENCFF339HOE/@@download/ENCFF339HOE.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF688DUI bed narrowPeak replicated peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF767UZO, ENCFF770SEL, ENCFF981GGU 608369 ENCODE Processing Pipeline a3a4a3ee9e2a0852d261c44b2c7fc228 https://www.encodeproject.org/files/ENCFF688DUI/@@download/ENCFF688DUI.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF970BWX bigBed narrowPeak replicated peaks ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF688DUI 1513583 ENCODE Processing Pipeline 808bb09b093c717612b6faff732f25f0 https://www.encodeproject.org/files/ENCFF970BWX/@@download/ENCFF970BWX.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF671WMT fastq reads ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3137824313 Bing Ren, UCSD d58f7d6c31860f57233288af20935545 SRA:SRR3653060 https://www.encodeproject.org/files/ENCFF671WMT/@@download/ENCFF671WMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released inconsistent platforms ENCFF978XUJ fastq reads ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3432576791 Bing Ren, UCSD b5bde245b7fa7b94866e9fc77b586196 SRA:SRR3653059 https://www.encodeproject.org/files/ENCFF978XUJ/@@download/ENCFF978XUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released inconsistent platforms ENCFF338SQC bam alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF978XUJ 3027642264 ENCODE Processing Pipeline e2d2e327f13e81a0a9a63389b135bd66 https://www.encodeproject.org/files/ENCFF338SQC/@@download/ENCFF338SQC.bam mm10-minimal archived inconsistent platforms ENCFF480WZM bam alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF671WMT, ENCFF806TVZ 2772106449 ENCODE Processing Pipeline cd5dba22681633b7026f0b5649f0166b https://www.encodeproject.org/files/ENCFF480WZM/@@download/ENCFF480WZM.bam mm10-minimal archived inconsistent platforms ENCFF057MZY bed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF338SQC, ENCFF480WZM, ENCFF667WJC 3106362 ENCODE Processing Pipeline d7d409dc36478a736e9b18db2013553c https://www.encodeproject.org/files/ENCFF057MZY/@@download/ENCFF057MZY.bed.gz mm10-minimal archived inconsistent platforms ENCFF417ULH bigBed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057MZY 8124947 ENCODE Processing Pipeline 3251030bad57fa01b20328b031f90e6c https://www.encodeproject.org/files/ENCFF417ULH/@@download/ENCFF417ULH.bigBed mm10-minimal archived inconsistent platforms ENCFF091KXX bigBed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF867JGA 5871315 ENCODE Processing Pipeline ea2a6c3328bec33819b3950201feec63 https://www.encodeproject.org/files/ENCFF091KXX/@@download/ENCFF091KXX.bigBed mm10-minimal archived inconsistent platforms ENCFF998TJP bigBed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF720KHP 6548136 ENCODE Processing Pipeline e9fb23029f1a414b950f119d466c83bb https://www.encodeproject.org/files/ENCFF998TJP/@@download/ENCFF998TJP.bigBed mm10-minimal archived inconsistent platforms ENCFF588ZAP bigWig signal p-value ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF338SQC, ENCFF667WJC 907478950 ENCODE Processing Pipeline 26e397cfa1341c28153297305ce40623 https://www.encodeproject.org/files/ENCFF588ZAP/@@download/ENCFF588ZAP.bigWig mm10-minimal archived inconsistent platforms ENCFF867JGA bed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF338SQC, ENCFF667WJC 2833337 ENCODE Processing Pipeline 3d2a71a07e2db3fdd227103892ba7cc8 https://www.encodeproject.org/files/ENCFF867JGA/@@download/ENCFF867JGA.bed.gz mm10-minimal archived inconsistent platforms ENCFF720KHP bed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF480WZM, ENCFF667WJC 3240598 ENCODE Processing Pipeline 8341d8a8a6576f004d673b5e9635d3ee https://www.encodeproject.org/files/ENCFF720KHP/@@download/ENCFF720KHP.bed.gz mm10-minimal archived inconsistent platforms ENCFF618FCU bigWig signal p-value ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF480WZM, ENCFF667WJC 989434833 ENCODE Processing Pipeline 368587975be9cf13042bae9979c52424 https://www.encodeproject.org/files/ENCFF618FCU/@@download/ENCFF618FCU.bigWig mm10-minimal archived inconsistent platforms ENCFF086RKN bigWig signal p-value ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF338SQC, ENCFF480WZM, ENCFF667WJC 1273919843 ENCODE Processing Pipeline 86226ef39852f377101b2ccb36e18a7c https://www.encodeproject.org/files/ENCFF086RKN/@@download/ENCFF086RKN.bigWig mm10-minimal archived inconsistent platforms ENCFF627JCI bigWig fold change over control ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF338SQC, ENCFF667WJC 1056738670 ENCODE Processing Pipeline c0a1a2595251102d071b226e6e2aaaa8 https://www.encodeproject.org/files/ENCFF627JCI/@@download/ENCFF627JCI.bigWig mm10-minimal archived inconsistent platforms ENCFF795CWR bigWig fold change over control ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF263OMS, ENCFF480WZM, ENCFF667WJC 994714925 ENCODE Processing Pipeline 19722e600e70025a57aea6fedf442147 https://www.encodeproject.org/files/ENCFF795CWR/@@download/ENCFF795CWR.bigWig mm10-minimal archived inconsistent platforms ENCFF043PQW bigWig fold change over control ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF263OMS, ENCFF338SQC, ENCFF480WZM, ENCFF667WJC 1543591773 ENCODE Processing Pipeline f829f8117b82adff68a610d812618eaf https://www.encodeproject.org/files/ENCFF043PQW/@@download/ENCFF043PQW.bigWig mm10-minimal archived inconsistent platforms ENCFF758TOE bed narrowPeak replicated peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057MZY, ENCFF720KHP, ENCFF867JGA 2626868 ENCODE Processing Pipeline 181d56d2bfc930ec5ddae0fb208066e1 https://www.encodeproject.org/files/ENCFF758TOE/@@download/ENCFF758TOE.bed.gz mm10-minimal archived inconsistent platforms ENCFF042XLD bigBed narrowPeak replicated peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF758TOE 5700579 ENCODE Processing Pipeline 5238730b062a2119fc7d5883e4378fdc https://www.encodeproject.org/files/ENCFF042XLD/@@download/ENCFF042XLD.bigBed mm10-minimal archived inconsistent platforms ENCFF202KJT bam unfiltered alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF671WMT 3730940324 ENCODE Processing Pipeline 639874e41ddf25ada4fd0204bf681af3 https://www.encodeproject.org/files/ENCFF202KJT/@@download/ENCFF202KJT.bam mm10 released inconsistent platforms ENCFF768PCV bam unfiltered alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF978XUJ 4076991934 ENCODE Processing Pipeline d37466f476a68892101d41fa653870c8 https://www.encodeproject.org/files/ENCFF768PCV/@@download/ENCFF768PCV.bam mm10 released inconsistent platforms ENCFF295BOL bam alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF671WMT 2771538696 ENCODE Processing Pipeline 34e6798f93171d2dd8daedcf0cc0b99f https://www.encodeproject.org/files/ENCFF295BOL/@@download/ENCFF295BOL.bam mm10 released inconsistent platforms ENCFF173RDF bam alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF978XUJ 3026962945 ENCODE Processing Pipeline 049365f8528c5d185dcf7b06d20bcc6d https://www.encodeproject.org/files/ENCFF173RDF/@@download/ENCFF173RDF.bam mm10 released inconsistent platforms ENCFF290HSC bed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF173RDF, ENCFF514GVM 3041401 ENCODE Processing Pipeline 1dd0340b7ee68dcd636c495466f653f0 https://www.encodeproject.org/files/ENCFF290HSC/@@download/ENCFF290HSC.bed.gz mm10 released inconsistent platforms ENCFF963YDL bed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF295BOL, ENCFF514GVM 3094655 ENCODE Processing Pipeline e79f8011bbf27ae85e2708f2b81bd342 https://www.encodeproject.org/files/ENCFF963YDL/@@download/ENCFF963YDL.bed.gz mm10 released inconsistent platforms ENCFF239XUV bed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF173RDF, ENCFF295BOL, ENCFF514GVM 3559332 ENCODE Processing Pipeline 967a4af0154327445e991e798ece94fd https://www.encodeproject.org/files/ENCFF239XUV/@@download/ENCFF239XUV.bed.gz mm10 released inconsistent platforms ENCFF706GUU bigBed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF290HSC 6296102 ENCODE Processing Pipeline bc7636db24040f4d4db1007608f9f71e https://www.encodeproject.org/files/ENCFF706GUU/@@download/ENCFF706GUU.bigBed mm10 released inconsistent platforms ENCFF583HAP bigBed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF963YDL 8157049 ENCODE Processing Pipeline 0a7de78eed5ad5c4c3f78862bdc80eb7 https://www.encodeproject.org/files/ENCFF583HAP/@@download/ENCFF583HAP.bigBed mm10 released inconsistent platforms ENCFF332KVM bigBed narrowPeak peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF239XUV 9291433 ENCODE Processing Pipeline c44c76a1b57d10d8d7dfe38d1f1fae7f https://www.encodeproject.org/files/ENCFF332KVM/@@download/ENCFF332KVM.bigBed mm10 released inconsistent platforms ENCFF691TGP bigWig signal p-value ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF173RDF, ENCFF514GVM 1068313055 ENCODE Processing Pipeline 04012e8013b6bd57cd1455174a2b4db8 https://www.encodeproject.org/files/ENCFF691TGP/@@download/ENCFF691TGP.bigWig mm10 released inconsistent platforms ENCFF022NKJ bigWig signal p-value ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF295BOL, ENCFF514GVM 853586655 ENCODE Processing Pipeline 6b5f217e276c4aac8239788e17cd5352 https://www.encodeproject.org/files/ENCFF022NKJ/@@download/ENCFF022NKJ.bigWig mm10 released inconsistent platforms ENCFF067OLJ bigWig signal p-value ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF173RDF, ENCFF295BOL, ENCFF514GVM 1625396322 ENCODE Processing Pipeline a23f3cb70a44b23955a437e5c97d6d92 https://www.encodeproject.org/files/ENCFF067OLJ/@@download/ENCFF067OLJ.bigWig mm10 released inconsistent platforms ENCFF589HGX bigWig fold change over control ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF173RDF, ENCFF514GVM 1187109401 ENCODE Processing Pipeline b5a7fc191f72fb6e66c642650737949e https://www.encodeproject.org/files/ENCFF589HGX/@@download/ENCFF589HGX.bigWig mm10 released inconsistent platforms ENCFF106VOX bigWig fold change over control ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF295BOL, ENCFF514GVM 1126143512 ENCODE Processing Pipeline 5e268d483cdfadceeead35a5af6d643a https://www.encodeproject.org/files/ENCFF106VOX/@@download/ENCFF106VOX.bigWig mm10 released inconsistent platforms ENCFF623CRW bigWig fold change over control ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031OYA, ENCFF173RDF, ENCFF295BOL, ENCFF514GVM 1641648650 ENCODE Processing Pipeline 6f9ad67cba511d81621daa4ae57aaed1 https://www.encodeproject.org/files/ENCFF623CRW/@@download/ENCFF623CRW.bigWig mm10 released inconsistent platforms ENCFF761MYS bed narrowPeak replicated peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF239XUV, ENCFF290HSC, ENCFF963YDL 2838248 ENCODE Processing Pipeline e879becfbf09bb55322e35d11beb9803 https://www.encodeproject.org/files/ENCFF761MYS/@@download/ENCFF761MYS.bed.gz mm10 released inconsistent platforms ENCFF567SVK bigBed narrowPeak replicated peaks ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF761MYS 6013553 ENCODE Processing Pipeline 8b03a5e97950429cf60c76274421339c https://www.encodeproject.org/files/ENCFF567SVK/@@download/ENCFF567SVK.bigBed mm10 released inconsistent platforms ENCFF001ZRM fastq reads ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1092434110 Bing Ren, UCSD cfcef2e4828e9664af9a976cde5b8136 SRA:SRR3652266 https://www.encodeproject.org/files/ENCFF001ZRM/@@download/ENCFF001ZRM.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUI/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZRR fastq reads ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1300575707 Bing Ren, UCSD 54aa5a1e686838282d3e15fd5c7e78c0 SRA:SRR3652268 https://www.encodeproject.org/files/ENCFF001ZRR/@@download/ENCFF001ZRR.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF479WJI bam alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRR, ENCFF806TVZ 1084622246 ENCODE Processing Pipeline 55f772102fe334099cecf19c85c586ac https://www.encodeproject.org/files/ENCFF479WJI/@@download/ENCFF479WJI.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF329DBE fastq reads ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 226478512 Bing Ren, UCSD b3b3ec33dd8f3c22e5597354714efe88 SRA:SRR3652267 https://www.encodeproject.org/files/ENCFF329DBE/@@download/ENCFF329DBE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUI/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF388MYY bam alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRM, ENCFF329DBE, ENCFF806TVZ 1087815792 ENCODE Processing Pipeline e78093369f6201d40a64c8ecf2eab47d https://www.encodeproject.org/files/ENCFF388MYY/@@download/ENCFF388MYY.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF345WPK bigBed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF266EFH 2163085 ENCODE Processing Pipeline f03130dfeba76cd5a613fd8fcfef9d6a https://www.encodeproject.org/files/ENCFF345WPK/@@download/ENCFF345WPK.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF297TYG bed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF388MYY, ENCFF851KTA 700358 ENCODE Processing Pipeline 99bed53ae35708472c87655a8f7f0425 https://www.encodeproject.org/files/ENCFF297TYG/@@download/ENCFF297TYG.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF266EFH bed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF479WJI, ENCFF851KTA 833153 ENCODE Processing Pipeline 7a3431243801c035d3d10b77fba41958 https://www.encodeproject.org/files/ENCFF266EFH/@@download/ENCFF266EFH.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF185MVP bed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265KAG, ENCFF388MYY, ENCFF479WJI, ENCFF851KTA 497562 ENCODE Processing Pipeline 9e1fb35f66629f8df47f6be8dca6d8d8 https://www.encodeproject.org/files/ENCFF185MVP/@@download/ENCFF185MVP.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF174OEC bigBed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185MVP 1096372 ENCODE Processing Pipeline 9b66b7784f8596c23f190cd265fdbe53 https://www.encodeproject.org/files/ENCFF174OEC/@@download/ENCFF174OEC.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF714URP bigBed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297TYG 1541581 ENCODE Processing Pipeline 4d7cf3063fe4ace1b235e5d1bea2732a https://www.encodeproject.org/files/ENCFF714URP/@@download/ENCFF714URP.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF126DWA bigWig signal p-value ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF479WJI, ENCFF851KTA 444818818 ENCODE Processing Pipeline b1014fd012714250aad3490fd1bd3c43 https://www.encodeproject.org/files/ENCFF126DWA/@@download/ENCFF126DWA.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF554QTB bigWig signal p-value ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF388MYY, ENCFF851KTA 417527494 ENCODE Processing Pipeline 7ff43e613396f716c36f1ad5107a6536 https://www.encodeproject.org/files/ENCFF554QTB/@@download/ENCFF554QTB.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF200CHO bigWig signal p-value ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265KAG, ENCFF388MYY, ENCFF479WJI, ENCFF851KTA 439028694 ENCODE Processing Pipeline bae940c8b233f0a8f1b3070408925391 https://www.encodeproject.org/files/ENCFF200CHO/@@download/ENCFF200CHO.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF063LGQ bigWig fold change over control ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF479WJI, ENCFF851KTA 437802356 ENCODE Processing Pipeline 653bcec3edf5d7e08d6af1a2476cc149 https://www.encodeproject.org/files/ENCFF063LGQ/@@download/ENCFF063LGQ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF266ECO bigBed narrowPeak replicated peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF493HHD 740715 ENCODE Processing Pipeline f5a43e6e5d33e258ee8d6dd807c2fecd https://www.encodeproject.org/files/ENCFF266ECO/@@download/ENCFF266ECO.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF393DKH bigWig fold change over control ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF388MYY, ENCFF851KTA 407706583 ENCODE Processing Pipeline 5c14724905210b27c17c027aee006511 https://www.encodeproject.org/files/ENCFF393DKH/@@download/ENCFF393DKH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF361BWQ bigWig fold change over control ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265KAG, ENCFF388MYY, ENCFF479WJI, ENCFF851KTA 694304246 ENCODE Processing Pipeline 36facf9728a935d097de3db711830b39 https://www.encodeproject.org/files/ENCFF361BWQ/@@download/ENCFF361BWQ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF493HHD bed narrowPeak replicated peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF185MVP, ENCFF266EFH, ENCFF297TYG 344681 ENCODE Processing Pipeline c8cf00b8892dab89d627d6d9fa7f0eae https://www.encodeproject.org/files/ENCFF493HHD/@@download/ENCFF493HHD.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF887WVS bam unfiltered alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRM, ENCFF018NEO, ENCFF329DBE 1621007302 ENCODE Processing Pipeline f9e8dec7f19405242cd9872b576e9cc6 https://www.encodeproject.org/files/ENCFF887WVS/@@download/ENCFF887WVS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF863TQN bam unfiltered alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRR, ENCFF018NEO 1666844154 ENCODE Processing Pipeline 4017b45b73f932a1f2642696c9942165 https://www.encodeproject.org/files/ENCFF863TQN/@@download/ENCFF863TQN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF665NIE bam alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRM, ENCFF018NEO, ENCFF329DBE 1034824510 ENCODE Processing Pipeline 60d48849ffe35bca96678c4fd45cf533 https://www.encodeproject.org/files/ENCFF665NIE/@@download/ENCFF665NIE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF791LRE bam alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRR, ENCFF018NEO 1084334832 ENCODE Processing Pipeline e62242c7d2fb56c654b82a04423fa0bc https://www.encodeproject.org/files/ENCFF791LRE/@@download/ENCFF791LRE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF038IIM bed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF791LRE 829034 ENCODE Processing Pipeline 05b47498c49e150c2e06528d9a8b382b https://www.encodeproject.org/files/ENCFF038IIM/@@download/ENCFF038IIM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF269ONW bed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF665NIE 272122 ENCODE Processing Pipeline 1889fb3bf5246126f949f406eb51201a https://www.encodeproject.org/files/ENCFF269ONW/@@download/ENCFF269ONW.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF782ODF bed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF665NIE, ENCFF791LRE 552659 ENCODE Processing Pipeline 83d51ae4913adaeb4c46d4a159243674 https://www.encodeproject.org/files/ENCFF782ODF/@@download/ENCFF782ODF.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF650VHU bigBed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF038IIM 2155627 ENCODE Processing Pipeline a04a39c5b085c075da08e5c027b06c8d https://www.encodeproject.org/files/ENCFF650VHU/@@download/ENCFF650VHU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF286OED bigBed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF269ONW 551694 ENCODE Processing Pipeline e2e643d3db4e0f2117fe93fb947ac5b6 https://www.encodeproject.org/files/ENCFF286OED/@@download/ENCFF286OED.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF437CUB bigBed narrowPeak peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF782ODF 1484425 ENCODE Processing Pipeline 1a2acbf08a656f71d58d078a17ec8a50 https://www.encodeproject.org/files/ENCFF437CUB/@@download/ENCFF437CUB.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF720DTM bigWig signal p-value ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF791LRE 444709925 ENCODE Processing Pipeline 57a5fbfe29afd40ea61e5982b5628a80 https://www.encodeproject.org/files/ENCFF720DTM/@@download/ENCFF720DTM.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF918NLJ bigWig signal p-value ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF665NIE 234327037 ENCODE Processing Pipeline 3e9c4063132a504927128406a18a7f6e https://www.encodeproject.org/files/ENCFF918NLJ/@@download/ENCFF918NLJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF397AUS bigWig signal p-value ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF665NIE, ENCFF791LRE 444155651 ENCODE Processing Pipeline 101488df155cc843ec6026a4a7a98f74 https://www.encodeproject.org/files/ENCFF397AUS/@@download/ENCFF397AUS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF566TDB bigWig fold change over control ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF791LRE 437760150 ENCODE Processing Pipeline d9d77371266456e27d5bef9ad5c68877 https://www.encodeproject.org/files/ENCFF566TDB/@@download/ENCFF566TDB.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830DZS bigWig fold change over control ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF665NIE 338136391 ENCODE Processing Pipeline 3524e35adedf4c2eb4bcfa735549a786 https://www.encodeproject.org/files/ENCFF830DZS/@@download/ENCFF830DZS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF832GKC bigWig fold change over control ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF665NIE, ENCFF791LRE 698153621 ENCODE Processing Pipeline 1f0e3c81c907f2145ca0c08a700b2fe5 https://www.encodeproject.org/files/ENCFF832GKC/@@download/ENCFF832GKC.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF919NDM bed narrowPeak replicated peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF038IIM, ENCFF269ONW, ENCFF782ODF 307874 ENCODE Processing Pipeline 8e237e29f7332f90ab66b821e1f1acd2 https://www.encodeproject.org/files/ENCFF919NDM/@@download/ENCFF919NDM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF181IWI bigBed narrowPeak replicated peaks ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF919NDM 668489 ENCODE Processing Pipeline 3f73f9f6611e1aacee0540efbab7318d https://www.encodeproject.org/files/ENCFF181IWI/@@download/ENCFF181IWI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001NQC bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NQE 406116062 Michael Snyder, Stanford f2744bfe1af81c45e223a5b64c56110b https://www.encodeproject.org/files/ENCFF001NQC/@@download/ENCFF001NQC.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQD bigBed narrowPeak peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJF 985936 Michael Snyder, Stanford ca2edccd95c29c5bb98119e7c1121453 https://www.encodeproject.org/files/ENCFF001NQD/@@download/ENCFF001NQD.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQE fastq reads ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 818690886 Michael Snyder, Stanford 1171f81073d78f04289d02421ca9b2e9 https://www.encodeproject.org/files/ENCFF001NQE/@@download/ENCFF001NQE.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQH fastq reads ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1148847464 Michael Snyder, Stanford 74ec5d86b93eff416d65094628ad5e37 https://www.encodeproject.org/files/ENCFF001NQH/@@download/ENCFF001NQH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQJ bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NQH 526260541 Michael Snyder, Stanford 8874c630a1a3a4b32fe2441fba6ad455 https://www.encodeproject.org/files/ENCFF001NQJ/@@download/ENCFF001NQJ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQK bigWig signal ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NQC, ENCFF001NQJ 347650911 Michael Snyder, Stanford 8c2c718b928c0a8c7a852e6e4000f45b https://www.encodeproject.org/files/ENCFF001NQK/@@download/ENCFF001NQK.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJF bed narrowPeak peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NQC, ENCFF001NQJ 360877 Michael Snyder, Stanford 432eb35c859149b1db13bf6e6af14f9b https://www.encodeproject.org/files/ENCFF001YJF/@@download/ENCFF001YJF.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF790QYJ bam unfiltered alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NQE, ENCFF018NEO 893040200 ENCODE Processing Pipeline b83623bb754d92626ffb49b67de2ebe4 https://www.encodeproject.org/files/ENCFF790QYJ/@@download/ENCFF790QYJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF756GBG bam unfiltered alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NQH, ENCFF018NEO 1272980362 ENCODE Processing Pipeline 3fd44df1f54f79c5f6d0c8c241710c93 https://www.encodeproject.org/files/ENCFF756GBG/@@download/ENCFF756GBG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF643WRW bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NQE, ENCFF018NEO 567582897 ENCODE Processing Pipeline c413884bf99de47fdaa5d87fbb87d335 https://www.encodeproject.org/files/ENCFF643WRW/@@download/ENCFF643WRW.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF658OJL bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NQH, ENCFF018NEO 840000890 ENCODE Processing Pipeline 81b0d93f4d1a9eccb15e48ded261b63e https://www.encodeproject.org/files/ENCFF658OJL/@@download/ENCFF658OJL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF525ZGM bigWig fold change over control ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF643WRW, ENCFF658OJL 501523047 ENCODE Processing Pipeline cb22093dc27ff7e2b38ef7cf51399eb9 https://www.encodeproject.org/files/ENCFF525ZGM/@@download/ENCFF525ZGM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF596CWB bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF252WGE 889257 ENCODE Processing Pipeline a39f9e368a3d60de27c8109ce4f27e99 https://www.encodeproject.org/files/ENCFF596CWB/@@download/ENCFF596CWB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF567VSU bed narrowPeak optimal idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017UZY, ENCFF137KKN, ENCFF547MET, ENCFF701CYM 510153 ENCODE Processing Pipeline 39172ed0f47af19a093793e5bbd26c8c https://www.encodeproject.org/files/ENCFF567VSU/@@download/ENCFF567VSU.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF267VAU bigWig signal p-value ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF643WRW, ENCFF658OJL 291301637 ENCODE Processing Pipeline 22d386dc994aa98b3b03ca1532b7d149 https://www.encodeproject.org/files/ENCFF267VAU/@@download/ENCFF267VAU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF969CVC bigWig signal p-value ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF643WRW 317928882 ENCODE Processing Pipeline 019f35da2186463543b981c0ab6c6d74 https://www.encodeproject.org/files/ENCFF969CVC/@@download/ENCFF969CVC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF455LEA bigBed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF137KKN 12747768 ENCODE Processing Pipeline 29196a6526f2600cc2bf2f98325e6943 https://www.encodeproject.org/files/ENCFF455LEA/@@download/ENCFF455LEA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF701CYM bed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF658OJL 5410123 ENCODE Processing Pipeline 35499ea9896e4ccfe7773a5ea44660a5 https://www.encodeproject.org/files/ENCFF701CYM/@@download/ENCFF701CYM.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF017UZY bed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF643WRW, ENCFF658OJL 6189608 ENCODE Processing Pipeline 2e2b12d5dd429d935cea824f8c3cb9a8 https://www.encodeproject.org/files/ENCFF017UZY/@@download/ENCFF017UZY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF252WGE bed narrowPeak conservative idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017UZY, ENCFF137KKN, ENCFF547MET, ENCFF701CYM 467372 ENCODE Processing Pipeline 428fc23db19acf576cde0a7894ddcbcd https://www.encodeproject.org/files/ENCFF252WGE/@@download/ENCFF252WGE.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF941QHO bigWig signal p-value ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF658OJL 304497480 ENCODE Processing Pipeline adb21107f2338b5533a843bd7ffd642d https://www.encodeproject.org/files/ENCFF941QHO/@@download/ENCFF941QHO.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF157KCK bigWig fold change over control ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF643WRW 259276245 ENCODE Processing Pipeline 110373176749b5e3296333afd71430de https://www.encodeproject.org/files/ENCFF157KCK/@@download/ENCFF157KCK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF921WIX bigWig fold change over control ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF658OJL 333880555 ENCODE Processing Pipeline 7737c664ddf4677042143fc1d75c4773 https://www.encodeproject.org/files/ENCFF921WIX/@@download/ENCFF921WIX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF137KKN bed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF643WRW 5398527 ENCODE Processing Pipeline f1355316063fc8bec7ddc3c73531c95d https://www.encodeproject.org/files/ENCFF137KKN/@@download/ENCFF137KKN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF056VAL bigBed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF017UZY 13088402 ENCODE Processing Pipeline 770579661feaf23aba481ad4a9a26748 https://www.encodeproject.org/files/ENCFF056VAL/@@download/ENCFF056VAL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF396BUI bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF567VSU 951922 ENCODE Processing Pipeline 94fb2d5cfc4e3df6804b2696f4a0ec20 https://www.encodeproject.org/files/ENCFF396BUI/@@download/ENCFF396BUI.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF025ZPM bigBed narrowPeak peaks and background as input for IDR ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF701CYM 12822243 ENCODE Processing Pipeline 29aa3fea2b809621f075b6e5cadf78f0 https://www.encodeproject.org/files/ENCFF025ZPM/@@download/ENCFF025ZPM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF786CEQ fastq reads ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2257679751 Bing Ren, UCSD 4a6d7a559e0c7df01aae2762b23e2d0a SRA:SRR3651264 https://www.encodeproject.org/files/ENCFF786CEQ/@@download/ENCFF786CEQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released mild to moderate bottlenecking, inconsistent platforms ENCFF731WKM fastq reads ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2254860426 Bing Ren, UCSD 4c0616a663d21d6e826260b0d5bd385f SRA:SRR3651263 https://www.encodeproject.org/files/ENCFF731WKM/@@download/ENCFF731WKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released mild to moderate bottlenecking, inconsistent platforms ENCFF587RPT bam alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF786CEQ, ENCFF806TVZ 1720708442 ENCODE Processing Pipeline 74a671191573b4b31244ebf9b1aae8f7 https://www.encodeproject.org/files/ENCFF587RPT/@@download/ENCFF587RPT.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF211IMR bam alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF731WKM, ENCFF806TVZ 1706900652 ENCODE Processing Pipeline 14177bcf7bf659ed438c6a0ffcdbafa9 https://www.encodeproject.org/files/ENCFF211IMR/@@download/ENCFF211IMR.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF909JFP bed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF211IMR, ENCFF330HOT, ENCFF493BXI, ENCFF587RPT 604033 ENCODE Processing Pipeline 691ffaa30e25819b95e92bdaa25d6378 https://www.encodeproject.org/files/ENCFF909JFP/@@download/ENCFF909JFP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF894UCK bigBed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF580EZU 1850776 ENCODE Processing Pipeline 3bb15d754480f3c82f14380c2e627e62 https://www.encodeproject.org/files/ENCFF894UCK/@@download/ENCFF894UCK.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF580EZU bed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF587RPT 560122 ENCODE Processing Pipeline 77b34d467e0d30a6aecc5c6ca71b66f3 https://www.encodeproject.org/files/ENCFF580EZU/@@download/ENCFF580EZU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF699NCI bigBed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF281EBX 1855784 ENCODE Processing Pipeline 8fabeb5a069a8b20314624b4037f06d1 https://www.encodeproject.org/files/ENCFF699NCI/@@download/ENCFF699NCI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF658QZW bigBed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF909JFP 1940159 ENCODE Processing Pipeline ec60944db9a08c8bf982a543e7a686b5 https://www.encodeproject.org/files/ENCFF658QZW/@@download/ENCFF658QZW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF588ZYE bigWig signal p-value ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF587RPT 549325147 ENCODE Processing Pipeline c6b5f67f79342a898490224e1c0a6cb8 https://www.encodeproject.org/files/ENCFF588ZYE/@@download/ENCFF588ZYE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF281EBX bed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF211IMR, ENCFF493BXI 566896 ENCODE Processing Pipeline cada143b3f4a50a4b851563661bfa8f8 https://www.encodeproject.org/files/ENCFF281EBX/@@download/ENCFF281EBX.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF495PMD bigWig signal p-value ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF211IMR, ENCFF493BXI 590186468 ENCODE Processing Pipeline 06a07ad9a80987339332f60bb3184bb7 https://www.encodeproject.org/files/ENCFF495PMD/@@download/ENCFF495PMD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF490LGQ bigWig fold change over control ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF587RPT 544708738 ENCODE Processing Pipeline 156a085f08cfc6867b902b8c87901d41 https://www.encodeproject.org/files/ENCFF490LGQ/@@download/ENCFF490LGQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF539OCK bigWig signal p-value ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF211IMR, ENCFF330HOT, ENCFF493BXI, ENCFF587RPT 886784087 ENCODE Processing Pipeline cb72c4a26283aa5f82b1aafbe0b6b93e https://www.encodeproject.org/files/ENCFF539OCK/@@download/ENCFF539OCK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF277DPY bigWig fold change over control ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF211IMR, ENCFF493BXI 566761097 ENCODE Processing Pipeline 7535ffce6b5da1511cc18ca6ada9cfe4 https://www.encodeproject.org/files/ENCFF277DPY/@@download/ENCFF277DPY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF501LVQ bigWig fold change over control ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF211IMR, ENCFF330HOT, ENCFF493BXI, ENCFF587RPT 1018066464 ENCODE Processing Pipeline c61ef7a63f3eb941bf43a21c3fd5bb31 https://www.encodeproject.org/files/ENCFF501LVQ/@@download/ENCFF501LVQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF591CKA bed narrowPeak replicated peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF281EBX, ENCFF580EZU, ENCFF909JFP 668832 ENCODE Processing Pipeline 5d992a3e9e821744ee9d4c16b815253d https://www.encodeproject.org/files/ENCFF591CKA/@@download/ENCFF591CKA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF043XVX bigBed narrowPeak replicated peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF591CKA 1635548 ENCODE Processing Pipeline ca99b1bc3d8558b47da9540b8f70ec98 https://www.encodeproject.org/files/ENCFF043XVX/@@download/ENCFF043XVX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF485UDC bam unfiltered alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF786CEQ 2539740834 ENCODE Processing Pipeline 020d010c35382ebc679c4346a301be6a https://www.encodeproject.org/files/ENCFF485UDC/@@download/ENCFF485UDC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF124TAB bam unfiltered alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF731WKM 2530695768 ENCODE Processing Pipeline 70d951f55a4b1db8f599a3ee456bd24a https://www.encodeproject.org/files/ENCFF124TAB/@@download/ENCFF124TAB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF460RJA bam alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF786CEQ 1720373978 ENCODE Processing Pipeline fc4ab4531f8a67798ec2233bf4c7fa1f https://www.encodeproject.org/files/ENCFF460RJA/@@download/ENCFF460RJA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF363DNM bam alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF731WKM 1706601538 ENCODE Processing Pipeline 0458710ef228710fc3a650ddb79bbecf https://www.encodeproject.org/files/ENCFF363DNM/@@download/ENCFF363DNM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF847QSC bed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF363DNM, ENCFF893IOJ 570349 ENCODE Processing Pipeline 62e5547a1c4b207742f1e451f0f0dfe0 https://www.encodeproject.org/files/ENCFF847QSC/@@download/ENCFF847QSC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF678AVW bed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF460RJA 521769 ENCODE Processing Pipeline 50604a19b7e23e1820bb32074a896c3a https://www.encodeproject.org/files/ENCFF678AVW/@@download/ENCFF678AVW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF017TXL bigBed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF678AVW 1758356 ENCODE Processing Pipeline 82e6e52a37f42c22a5bff59b3478c1b1 https://www.encodeproject.org/files/ENCFF017TXL/@@download/ENCFF017TXL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF041HXY bigBed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF847QSC 1856702 ENCODE Processing Pipeline 89da226f5c2c412a8a33c9c4bd7cf839 https://www.encodeproject.org/files/ENCFF041HXY/@@download/ENCFF041HXY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF387XVP bed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF363DNM, ENCFF460RJA, ENCFF893IOJ 607489 ENCODE Processing Pipeline c1386d6b1b2890d8a1527d03effd13da https://www.encodeproject.org/files/ENCFF387XVP/@@download/ENCFF387XVP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF334TKN bigBed narrowPeak peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF387XVP 1945307 ENCODE Processing Pipeline d6cac3f3469ed9013bac8eacc17ad8f1 https://www.encodeproject.org/files/ENCFF334TKN/@@download/ENCFF334TKN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF248AVQ bigWig signal p-value ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF460RJA 573899295 ENCODE Processing Pipeline 11d35187a197d3a19bb0c1cfa22c67d5 https://www.encodeproject.org/files/ENCFF248AVQ/@@download/ENCFF248AVQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF825HSN bigWig signal p-value ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF363DNM, ENCFF893IOJ 513147178 ENCODE Processing Pipeline df46397f5a37f20bba4da06b33f1f1fc https://www.encodeproject.org/files/ENCFF825HSN/@@download/ENCFF825HSN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF958GSZ bigWig signal p-value ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF363DNM, ENCFF460RJA, ENCFF893IOJ 855192418 ENCODE Processing Pipeline 8f0bd40922128f28a931767242b477fc https://www.encodeproject.org/files/ENCFF958GSZ/@@download/ENCFF958GSZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF478UBP bigWig fold change over control ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF460RJA 612149537 ENCODE Processing Pipeline d7698034844b358bac289651dd07f7e2 https://www.encodeproject.org/files/ENCFF478UBP/@@download/ENCFF478UBP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF338ITZ bigWig fold change over control ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF363DNM, ENCFF893IOJ 610631501 ENCODE Processing Pipeline 6be893962dba8d79c9860f883426bdc3 https://www.encodeproject.org/files/ENCFF338ITZ/@@download/ENCFF338ITZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF394ABQ bigWig fold change over control ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF363DNM, ENCFF460RJA, ENCFF893IOJ 1098992562 ENCODE Processing Pipeline bfdc738dbca293cf93baf7b5c3404fa8 https://www.encodeproject.org/files/ENCFF394ABQ/@@download/ENCFF394ABQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF237RNY bigBed narrowPeak replicated peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF391UBH 1643180 ENCODE Processing Pipeline 5e98816d12fbca8055df0802f3474f4a https://www.encodeproject.org/files/ENCFF237RNY/@@download/ENCFF237RNY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF391UBH bed narrowPeak replicated peaks ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF387XVP, ENCFF678AVW, ENCFF847QSC 669794 ENCODE Processing Pipeline 55c21a43729ff006efe97b818d6cc5f6 https://www.encodeproject.org/files/ENCFF391UBH/@@download/ENCFF391UBH.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002AOR fastq reads ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 686386323 Bing Ren, UCSD 4869f71db97e0704ea5bb1451e51270d SRA:SRR3652279 https://www.encodeproject.org/files/ENCFF002AOR/@@download/ENCFF002AOR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQU/ released mixed read lengths, low read length, inconsistent control read length, low read depth ENCFF002AOT fastq reads ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1263742662 Bing Ren, UCSD 20b696de6433db18233da6d681f33907 SRA:SRR3652280 https://www.encodeproject.org/files/ENCFF002AOT/@@download/ENCFF002AOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQS/ released mixed read lengths, low read length, low read depth ENCFF135EBN bam alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOT, ENCFF806TVZ 1020132479 ENCODE Processing Pipeline a7b3b9f283b048b7afd80625a2bef376 https://www.encodeproject.org/files/ENCFF135EBN/@@download/ENCFF135EBN.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF797RQA bam alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOR, ENCFF806TVZ 579973111 ENCODE Processing Pipeline 3f9e04f0f927d33dd1b5674cc71a7887 https://www.encodeproject.org/files/ENCFF797RQA/@@download/ENCFF797RQA.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF379FBJ bed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF135EBN, ENCFF977HMC 862898 ENCODE Processing Pipeline f8c47c93e912c9f860624b345037c4b2 https://www.encodeproject.org/files/ENCFF379FBJ/@@download/ENCFF379FBJ.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF412ZXZ bed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF797RQA 851462 ENCODE Processing Pipeline 482c9215130e7de102e1c9f027da392d https://www.encodeproject.org/files/ENCFF412ZXZ/@@download/ENCFF412ZXZ.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF924FFN bigBed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF379FBJ 2728687 ENCODE Processing Pipeline 0cee6683300cd2fd1d90a27d2c56ef0d https://www.encodeproject.org/files/ENCFF924FFN/@@download/ENCFF924FFN.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF527TMB bigBed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF607ONK 3279928 ENCODE Processing Pipeline d240568fe104f3b024464e29ca930313 https://www.encodeproject.org/files/ENCFF527TMB/@@download/ENCFF527TMB.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF223ATI bigBed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF412ZXZ 2172654 ENCODE Processing Pipeline caf52f9eaac0c536bf34c480dbcb45b4 https://www.encodeproject.org/files/ENCFF223ATI/@@download/ENCFF223ATI.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF607ONK bed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF135EBN, ENCFF720UVE, ENCFF797RQA, ENCFF977HMC 1088918 ENCODE Processing Pipeline 9413c2aed95aefc9a2e8984507412b4c https://www.encodeproject.org/files/ENCFF607ONK/@@download/ENCFF607ONK.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF753WIC bigWig signal p-value ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF135EBN, ENCFF977HMC 396453400 ENCODE Processing Pipeline 2ec85a62e8cfdac5e5d25d222ba81ec9 https://www.encodeproject.org/files/ENCFF753WIC/@@download/ENCFF753WIC.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF644BUC bigWig signal p-value ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF797RQA 324981311 ENCODE Processing Pipeline c32d61332d46cee38fdad2bc84efdef4 https://www.encodeproject.org/files/ENCFF644BUC/@@download/ENCFF644BUC.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF115ABK bigWig signal p-value ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF135EBN, ENCFF720UVE, ENCFF797RQA, ENCFF977HMC 714602423 ENCODE Processing Pipeline ef4ac7eacb2775833cd4b4cb97ecf642 https://www.encodeproject.org/files/ENCFF115ABK/@@download/ENCFF115ABK.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF069TGS bigWig fold change over control ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF135EBN, ENCFF977HMC 443924777 ENCODE Processing Pipeline 2c102d1abaa2cda2e8ef6a6771fe9e90 https://www.encodeproject.org/files/ENCFF069TGS/@@download/ENCFF069TGS.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF940QHP bigWig fold change over control ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF797RQA 309142129 ENCODE Processing Pipeline ee3f335d7496a4cbce49a64d230dc846 https://www.encodeproject.org/files/ENCFF940QHP/@@download/ENCFF940QHP.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF203YBP bed narrowPeak replicated peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF379FBJ, ENCFF412ZXZ, ENCFF607ONK 730444 ENCODE Processing Pipeline a1b26179cf55683f71a2eaac6871eb86 https://www.encodeproject.org/files/ENCFF203YBP/@@download/ENCFF203YBP.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF853FVT bigWig fold change over control ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF135EBN, ENCFF720UVE, ENCFF797RQA, ENCFF977HMC 798523165 ENCODE Processing Pipeline c4c4d073c30447fae390167bcbf5b2bb https://www.encodeproject.org/files/ENCFF853FVT/@@download/ENCFF853FVT.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF819JVG bigBed narrowPeak replicated peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF203YBP 1742755 ENCODE Processing Pipeline c4e93641cc360e2c8a62e0a8f0f60f90 https://www.encodeproject.org/files/ENCFF819JVG/@@download/ENCFF819JVG.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF948JVA bam unfiltered alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOR, ENCFF018NEO 825112528 ENCODE Processing Pipeline 42f9366894de5e3fd941aa2de67f019d https://www.encodeproject.org/files/ENCFF948JVA/@@download/ENCFF948JVA.bam mm10 released mixed read lengths, low read length, low read depth ENCFF318NFL bam unfiltered alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOT, ENCFF018NEO 1121022725 ENCODE Processing Pipeline 5e1f3cdcfd7404d8f6f4c9f356bfa004 https://www.encodeproject.org/files/ENCFF318NFL/@@download/ENCFF318NFL.bam mm10 released mixed read lengths, low read length, low read depth ENCFF128MHU bam alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOR, ENCFF018NEO 579838109 ENCODE Processing Pipeline e36531bfb48dd5c5cc757ae5edf41e40 https://www.encodeproject.org/files/ENCFF128MHU/@@download/ENCFF128MHU.bam mm10 released mixed read lengths, low read length, low read depth ENCFF795AOE bam alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOT, ENCFF018NEO 793262196 ENCODE Processing Pipeline bbbb973a67359218badce4415194ecbb https://www.encodeproject.org/files/ENCFF795AOE/@@download/ENCFF795AOE.bam mm10 released mixed read lengths, low read length, low read depth ENCFF275NZN bed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF322DCQ, ENCFF795AOE 823502 ENCODE Processing Pipeline e2af066286278db5e9b7d1c98a9d57ef https://www.encodeproject.org/files/ENCFF275NZN/@@download/ENCFF275NZN.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF840GHG bed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF128MHU, ENCFF979XVT 776250 ENCODE Processing Pipeline 4a53a780d70200c7b7e6f8f3b23f6faf https://www.encodeproject.org/files/ENCFF840GHG/@@download/ENCFF840GHG.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF518XQB bed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF128MHU, ENCFF322DCQ, ENCFF795AOE, ENCFF979XVT 1042103 ENCODE Processing Pipeline 9266b2b13b34f1c551e17737740ee711 https://www.encodeproject.org/files/ENCFF518XQB/@@download/ENCFF518XQB.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF174IVD bigBed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF275NZN 2608561 ENCODE Processing Pipeline 36e7b0fe1c0d0ba398fcbfe171072436 https://www.encodeproject.org/files/ENCFF174IVD/@@download/ENCFF174IVD.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF037PAB bigBed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF840GHG 2014336 ENCODE Processing Pipeline de993864f037c9b68c03f5c32831ff24 https://www.encodeproject.org/files/ENCFF037PAB/@@download/ENCFF037PAB.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF844SNC bigBed narrowPeak peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF518XQB 3146390 ENCODE Processing Pipeline 2cfbb828e22c4f547b330249addca424 https://www.encodeproject.org/files/ENCFF844SNC/@@download/ENCFF844SNC.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF274VMO bigWig signal p-value ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF322DCQ, ENCFF795AOE 449274430 ENCODE Processing Pipeline 9b4cf3c3b6f4d361cde0738ba244bc24 https://www.encodeproject.org/files/ENCFF274VMO/@@download/ENCFF274VMO.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF266CCK bigWig signal p-value ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF128MHU, ENCFF979XVT 326589683 ENCODE Processing Pipeline 1b3f596b5d6d3955e3bbc054e9a5d20c https://www.encodeproject.org/files/ENCFF266CCK/@@download/ENCFF266CCK.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF793RAV bigWig signal p-value ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF128MHU, ENCFF322DCQ, ENCFF795AOE, ENCFF979XVT 646013695 ENCODE Processing Pipeline ba35309a2bb073f7b7015d5c9b6bc6cc https://www.encodeproject.org/files/ENCFF793RAV/@@download/ENCFF793RAV.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF275WPY bigWig fold change over control ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF322DCQ, ENCFF795AOE 425553010 ENCODE Processing Pipeline a6ac0dbe424c21d23f743f8c44e6fe1e https://www.encodeproject.org/files/ENCFF275WPY/@@download/ENCFF275WPY.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF089DYK bigWig fold change over control ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF128MHU, ENCFF979XVT 312696160 ENCODE Processing Pipeline 38182d44fe3828c751c9cab484c33a9b https://www.encodeproject.org/files/ENCFF089DYK/@@download/ENCFF089DYK.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF042PHG bigWig fold change over control ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF128MHU, ENCFF322DCQ, ENCFF795AOE, ENCFF979XVT 802169262 ENCODE Processing Pipeline 7b51b1423b3b1d3028f4ea5c454ac778 https://www.encodeproject.org/files/ENCFF042PHG/@@download/ENCFF042PHG.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF435ZTR bed narrowPeak replicated peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF275NZN, ENCFF518XQB, ENCFF840GHG 698982 ENCODE Processing Pipeline d57f83d10400cdf8747987b808904d0d https://www.encodeproject.org/files/ENCFF435ZTR/@@download/ENCFF435ZTR.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF692YJD bigBed narrowPeak replicated peaks ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF435ZTR 1662869 ENCODE Processing Pipeline d24c5a10d8cd00dd047c55ab27b5c761 https://www.encodeproject.org/files/ENCFF692YJD/@@download/ENCFF692YJD.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF001MRE bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MRN 703317298 Ross Hardison, PennState 7c3767a82699dc32136171179c48805a https://www.encodeproject.org/files/ENCFF001MRE/@@download/ENCFF001MRE.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MRF bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MRQ 579888089 Ross Hardison, PennState b8648516ae1667a01c8ab1d4886816fd https://www.encodeproject.org/files/ENCFF001MRF/@@download/ENCFF001MRF.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MRG bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFP 1027733 Ross Hardison, PennState 43e9beafcf19bbc8998afbf914f73588 https://www.encodeproject.org/files/ENCFF001MRG/@@download/ENCFF001MRG.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MRJ bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFQ 696699 Ross Hardison, PennState 50c018b4c1394f44a3a16b12b0f5ebf3 https://www.encodeproject.org/files/ENCFF001MRJ/@@download/ENCFF001MRJ.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MRK bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFR 1024374 Ross Hardison, PennState 6330780e9323b10947190609c879bf5b https://www.encodeproject.org/files/ENCFF001MRK/@@download/ENCFF001MRK.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MRL bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2182561507 Ross Hardison, PennState 5dfe95b0176ad68802482fb4973e2294 https://www.encodeproject.org/files/ENCFF001MRL/@@download/ENCFF001MRL.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MRM bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1971273654 Ross Hardison, PennState 54326e55de39c443436dc469f2db85fb https://www.encodeproject.org/files/ENCFF001MRM/@@download/ENCFF001MRM.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MRN fastq reads ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 551834958 Ross Hardison, PennState 270a7ff3d4c265fbf436b644ebd66b3b https://www.encodeproject.org/files/ENCFF001MRN/@@download/ENCFF001MRN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001MRO bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 3361135014 Ross Hardison, PennState d288601f84500ad7faf78c87828f92c8 https://www.encodeproject.org/files/ENCFF001MRO/@@download/ENCFF001MRO.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MRQ fastq reads ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 453798372 Ross Hardison, PennState 4c8898b087a582a4a43399e43b4e1c3f https://www.encodeproject.org/files/ENCFF001MRQ/@@download/ENCFF001MRQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released mixed read lengths, low read length, inconsistent platforms, inconsistent control read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF001YFP bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 528780 Ross Hardison, PennState eceb7b84d7a1435cdd675ca27969dd4e https://www.encodeproject.org/files/ENCFF001YFP/@@download/ENCFF001YFP.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFQ bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 438465 Ross Hardison, PennState c7037bca8f00efff65b4b64a4d5cd0e1 https://www.encodeproject.org/files/ENCFF001YFQ/@@download/ENCFF001YFQ.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YFR bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 503668 Ross Hardison, PennState b7fce43e7cafd07c2003a7df9097bf12 https://www.encodeproject.org/files/ENCFF001YFR/@@download/ENCFF001YFR.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF920RHB bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 382537031 ENCODE Processing Pipeline 6fb949942f1610e0fabcdd606b43b7d9 https://www.encodeproject.org/files/ENCFF920RHB/@@download/ENCFF920RHB.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF903WXR bam unfiltered alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 741103513 ENCODE Processing Pipeline 8e703dc273268fe15adbc30303abb352 https://www.encodeproject.org/files/ENCFF903WXR/@@download/ENCFF903WXR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF440GRL bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 531488649 ENCODE Processing Pipeline 85c27eb8bb732b45034cc2635b40c9e6 https://www.encodeproject.org/files/ENCFF440GRL/@@download/ENCFF440GRL.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF422FFH bam unfiltered alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 560260032 ENCODE Processing Pipeline b75766941fa3faae638d138eda3d084c https://www.encodeproject.org/files/ENCFF422FFH/@@download/ENCFF422FFH.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF505YBK bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 797875156 ENCODE Processing Pipeline f855ac0f8a444d35bb90b62537cf1eca https://www.encodeproject.org/files/ENCFF505YBK/@@download/ENCFF505YBK.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF452USO bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 800855498 ENCODE Processing Pipeline f4c070c1a3d0cf8fa43b9e0b9082a80a https://www.encodeproject.org/files/ENCFF452USO/@@download/ENCFF452USO.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF057EEV bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 935330337 ENCODE Processing Pipeline fcce04023c4a853953e37e96562fe179 https://www.encodeproject.org/files/ENCFF057EEV/@@download/ENCFF057EEV.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF288VZZ bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 460756741 ENCODE Processing Pipeline 520d3a1403102210b999ed9ca1e77fe7 https://www.encodeproject.org/files/ENCFF288VZZ/@@download/ENCFF288VZZ.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF547IZY bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 507042614 ENCODE Processing Pipeline f5d99a0ec18cfc15fe1364437c634e43 https://www.encodeproject.org/files/ENCFF547IZY/@@download/ENCFF547IZY.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF816XFR bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 799047029 ENCODE Processing Pipeline 4d2a43968e8d44f3bb77f4b9af7cdc12 https://www.encodeproject.org/files/ENCFF816XFR/@@download/ENCFF816XFR.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF456FUK bed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 4210378 ENCODE Processing Pipeline eced858a9974eaf3342122c853996553 https://www.encodeproject.org/files/ENCFF456FUK/@@download/ENCFF456FUK.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF163MHO bed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 6021055 ENCODE Processing Pipeline c20f8935cd81a478eb9604735b6898c6 https://www.encodeproject.org/files/ENCFF163MHO/@@download/ENCFF163MHO.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF491MYA bigBed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF638XCM 10627635 ENCODE Processing Pipeline db4e57bdd7257869c890df89894fbae9 https://www.encodeproject.org/files/ENCFF491MYA/@@download/ENCFF491MYA.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF392XQY bigBed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF163MHO 11340398 ENCODE Processing Pipeline 7337573571ec421ab9d54d4750fad834 https://www.encodeproject.org/files/ENCFF392XQY/@@download/ENCFF392XQY.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF638XCM bed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 5229595 ENCODE Processing Pipeline 7dcfe2bb1e2d1172d38273bdbf07b11d https://www.encodeproject.org/files/ENCFF638XCM/@@download/ENCFF638XCM.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF929RJU bed narrowPeak optimal idr thresholded peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF163MHO, ENCFF456FUK, ENCFF547MET, ENCFF638XCM 461703 ENCODE Processing Pipeline d668027fd0716f46246446025db4c677 https://www.encodeproject.org/files/ENCFF929RJU/@@download/ENCFF929RJU.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF980API bigBed narrowPeak peaks and background as input for IDR ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF456FUK 8923739 ENCODE Processing Pipeline d58074427735ba9048d4a355a27b04f1 https://www.encodeproject.org/files/ENCFF980API/@@download/ENCFF980API.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF003MBJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF929RJU 837163 ENCODE Processing Pipeline a3a8e2770ed14c2b2d16be7fbe94882b https://www.encodeproject.org/files/ENCFF003MBJ/@@download/ENCFF003MBJ.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF269MZC bam alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF515ALU, ENCFF806TVZ 1984523666 ENCODE Processing Pipeline c29a79faca7539f7b8a9922ad0c0a5fb https://www.encodeproject.org/files/ENCFF269MZC/@@download/ENCFF269MZC.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF170XAR bam alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF246LOG, ENCFF806TVZ 1953557009 ENCODE Processing Pipeline 705608dfa48cd78e3aa15f60c68b0e2f https://www.encodeproject.org/files/ENCFF170XAR/@@download/ENCFF170XAR.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF246LOG fastq reads ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2264497390 Bing Ren, UCSD 54f7a9a9129aff76a6f3bec9d7fec25f SRA:SRR3652180 https://www.encodeproject.org/files/ENCFF246LOG/@@download/ENCFF246LOG.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF515ALU fastq reads ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2305003331 Bing Ren, UCSD 1f98842862561e88779ad942e8fe84e6 SRA:SRR3652178 https://www.encodeproject.org/files/ENCFF515ALU/@@download/ENCFF515ALU.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF262OPL fastq reads ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 500536894 Bing Ren, UCSD 08b8e2853231188e6f3c9a7f92a508af SRA:SRR3652179 https://www.encodeproject.org/files/ENCFF262OPL/@@download/ENCFF262OPL.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF298XQU fastq reads ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 769054512 Bing Ren, UCSD 338f695264ae9ceb827e9e3b54b0d7f6 SRA:SRR3652181 https://www.encodeproject.org/files/ENCFF298XQU/@@download/ENCFF298XQU.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF876QJH bam alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF246LOG, ENCFF298XQU 2772426435 ENCODE Processing Pipeline 40f07dd1d9bf1bbc540e3a82dfc64f0e https://www.encodeproject.org/files/ENCFF876QJH/@@download/ENCFF876QJH.bam mm10 released sequencing runs labeled as technical replicates ENCFF200JPL bam alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF262OPL, ENCFF515ALU 2527097035 ENCODE Processing Pipeline 3ac9fcaf004e6f3461725e22d8c8d579 https://www.encodeproject.org/files/ENCFF200JPL/@@download/ENCFF200JPL.bam mm10 released sequencing runs labeled as technical replicates ENCFF936XBC bam unfiltered alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF018NEO, ENCFF262OPL, ENCFF515ALU 3590539306 ENCODE Processing Pipeline fcff30ab1529a0a87c539810373cff3b https://www.encodeproject.org/files/ENCFF936XBC/@@download/ENCFF936XBC.bam mm10 released sequencing runs labeled as technical replicates ENCFF248KLP bam unfiltered alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018NEO, ENCFF246LOG, ENCFF298XQU 3922152490 ENCODE Processing Pipeline 7482e69fb3a941a82bbee9ee9522404d https://www.encodeproject.org/files/ENCFF248KLP/@@download/ENCFF248KLP.bam mm10 released sequencing runs labeled as technical replicates ENCFF294RAD fastq reads ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1205554492 Bing Ren, UCSD d4fce252a14991da6a8b62cad0ee74fd SRA:SRR4235774 https://www.encodeproject.org/files/ENCFF294RAD/@@download/ENCFF294RAD.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released mild to moderate bottlenecking ENCFF242YWQ fastq reads ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1393811986 Bing Ren, UCSD 19baa6a91e1aa3f6ae06de6623a02da8 SRA:SRR4235775 https://www.encodeproject.org/files/ENCFF242YWQ/@@download/ENCFF242YWQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released mild to moderate bottlenecking ENCFF597QLG bam unfiltered alignments ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF242YWQ 1886138554 ENCODE Processing Pipeline 0e7f8c8890801a61b53404ef30644d28 https://www.encodeproject.org/files/ENCFF597QLG/@@download/ENCFF597QLG.bam mm10 released mild to moderate bottlenecking ENCFF720GQP bam alignments ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF242YWQ 1511582448 ENCODE Processing Pipeline bb6471ad3dcda361a95154b95826d531 https://www.encodeproject.org/files/ENCFF720GQP/@@download/ENCFF720GQP.bam mm10 released mild to moderate bottlenecking ENCFF024MPT bam alignments ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF294RAD 1333951908 ENCODE Processing Pipeline 0abd5bcaccf91027c127e077f86e94ea https://www.encodeproject.org/files/ENCFF024MPT/@@download/ENCFF024MPT.bam mm10 released mild to moderate bottlenecking ENCFF937UZL bam unfiltered alignments ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF294RAD 1667529913 ENCODE Processing Pipeline 260f37b0f81cfdc0c23402f22148ffa5 https://www.encodeproject.org/files/ENCFF937UZL/@@download/ENCFF937UZL.bam mm10 released mild to moderate bottlenecking ENCFF155WHD bed narrowPeak peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF024MPT, ENCFF280XYK 2062766 ENCODE Processing Pipeline 213defce78994a368b583cb23af5b7cb https://www.encodeproject.org/files/ENCFF155WHD/@@download/ENCFF155WHD.bed.gz mm10 released mild to moderate bottlenecking ENCFF994RHM bigBed narrowPeak peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF155WHD 4574832 ENCODE Processing Pipeline 36473c61f720619a97462c9bcd67c491 https://www.encodeproject.org/files/ENCFF994RHM/@@download/ENCFF994RHM.bigBed mm10 released mild to moderate bottlenecking ENCFF942XGR bigBed narrowPeak peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF952QJS 5900908 ENCODE Processing Pipeline f91c27858fe412bf47ec3296d2dbc490 https://www.encodeproject.org/files/ENCFF942XGR/@@download/ENCFF942XGR.bigBed mm10 released mild to moderate bottlenecking ENCFF013ORF bigWig signal p-value ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF024MPT, ENCFF280XYK 686128044 ENCODE Processing Pipeline 1272ff14e89798461150fcb0a96d0cfc https://www.encodeproject.org/files/ENCFF013ORF/@@download/ENCFF013ORF.bigWig mm10 released mild to moderate bottlenecking ENCFF774NMR bigWig signal p-value ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF531DRS, ENCFF720GQP 683996495 ENCODE Processing Pipeline b28d421fb621e21431406cfbe4abad4a https://www.encodeproject.org/files/ENCFF774NMR/@@download/ENCFF774NMR.bigWig mm10 released mild to moderate bottlenecking ENCFF479EIL bigWig fold change over control ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF024MPT, ENCFF280XYK 663865194 ENCODE Processing Pipeline 3c9d431d203b04b8d4b381bb99055cf1 https://www.encodeproject.org/files/ENCFF479EIL/@@download/ENCFF479EIL.bigWig mm10 released mild to moderate bottlenecking ENCFF952QJS bed narrowPeak peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF531DRS, ENCFF720GQP 2161237 ENCODE Processing Pipeline ffb396316328609658c92eb096b912e4 https://www.encodeproject.org/files/ENCFF952QJS/@@download/ENCFF952QJS.bed.gz mm10 released mild to moderate bottlenecking ENCFF119ZVJ bigWig signal p-value ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF024MPT, ENCFF280XYK, ENCFF531DRS, ENCFF720GQP 879056956 ENCODE Processing Pipeline eef94f3510c4a27830c7ddd12ae821da https://www.encodeproject.org/files/ENCFF119ZVJ/@@download/ENCFF119ZVJ.bigWig mm10 released mild to moderate bottlenecking ENCFF478YGV bigWig fold change over control ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF531DRS, ENCFF720GQP 715805847 ENCODE Processing Pipeline 055916dc93db3c3e91eeeac39da8a1f5 https://www.encodeproject.org/files/ENCFF478YGV/@@download/ENCFF478YGV.bigWig mm10 released mild to moderate bottlenecking ENCFF852PPE bed narrowPeak peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF024MPT, ENCFF280XYK, ENCFF531DRS, ENCFF720GQP 2837343 ENCODE Processing Pipeline 086404dc403d5cad00386609e6c9c32a https://www.encodeproject.org/files/ENCFF852PPE/@@download/ENCFF852PPE.bed.gz mm10 released mild to moderate bottlenecking ENCFF740XDU bigBed narrowPeak peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF852PPE 7512111 ENCODE Processing Pipeline 07c5c520d73cc1c7b340a2791a5ba9b6 https://www.encodeproject.org/files/ENCFF740XDU/@@download/ENCFF740XDU.bigBed mm10 released mild to moderate bottlenecking ENCFF596NWP bigBed narrowPeak replicated peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF117LLJ 3876267 ENCODE Processing Pipeline c4b7f1cf8f14fff22c3a8dfff8d154bb https://www.encodeproject.org/files/ENCFF596NWP/@@download/ENCFF596NWP.bigBed mm10 released mild to moderate bottlenecking ENCFF502YGZ bigWig fold change over control ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF024MPT, ENCFF280XYK, ENCFF531DRS, ENCFF720GQP 1187065377 ENCODE Processing Pipeline 442a8bc885faabd84acc01505ed400ce https://www.encodeproject.org/files/ENCFF502YGZ/@@download/ENCFF502YGZ.bigWig mm10 released mild to moderate bottlenecking ENCFF117LLJ bed narrowPeak replicated peaks ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF155WHD, ENCFF852PPE, ENCFF952QJS 1841573 ENCODE Processing Pipeline 7d62fc83314ee2c57a8036afb95c4442 https://www.encodeproject.org/files/ENCFF117LLJ/@@download/ENCFF117LLJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF001NXN bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NXQ 470012521 Michael Snyder, Stanford 1ceed07debeeda5670fa64cb0648d01d https://www.encodeproject.org/files/ENCFF001NXN/@@download/ENCFF001NXN.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXP bigBed narrowPeak peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJZ 368304 Michael Snyder, Stanford d224fa8d3ece935ccf55b2b1c997496b https://www.encodeproject.org/files/ENCFF001NXP/@@download/ENCFF001NXP.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXQ fastq reads ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1054933775 Michael Snyder, Stanford 73614a27bce86fb5037ad04ff532b9d0 https://www.encodeproject.org/files/ENCFF001NXQ/@@download/ENCFF001NXQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTD/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXS fastq reads ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 950708384 Michael Snyder, Stanford 3d730aeb9419ed931cf5b658eeb39843 https://www.encodeproject.org/files/ENCFF001NXS/@@download/ENCFF001NXS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTF/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXU bigWig signal ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NXN, ENCFF001NXV 304120173 Michael Snyder, Stanford 3f95e8d510ce43582eb2ccbd66a7b455 https://www.encodeproject.org/files/ENCFF001NXU/@@download/ENCFF001NXU.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXV bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NXS 437907884 Michael Snyder, Stanford 19db2477e1e83950f2a31f2f22c41522 https://www.encodeproject.org/files/ENCFF001NXV/@@download/ENCFF001NXV.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJZ bed narrowPeak peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NXN, ENCFF001NXV 128359 Michael Snyder, Stanford dd9ca816223656e4d318efa6fbba2873 https://www.encodeproject.org/files/ENCFF001YJZ/@@download/ENCFF001YJZ.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF190KLW bam unfiltered alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NXS, ENCFF018NEO 969149260 ENCODE Processing Pipeline 85eedd65392e063ededf532a62901047 https://www.encodeproject.org/files/ENCFF190KLW/@@download/ENCFF190KLW.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF568LCO bam unfiltered alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NXQ, ENCFF018NEO 1046579413 ENCODE Processing Pipeline 94dda320174594e7a6bec701be5da50f https://www.encodeproject.org/files/ENCFF568LCO/@@download/ENCFF568LCO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF641XAS bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NXS, ENCFF018NEO 620174059 ENCODE Processing Pipeline 76a47e3e25f269888d33f03a9c9bff1a https://www.encodeproject.org/files/ENCFF641XAS/@@download/ENCFF641XAS.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF847DDB bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NXQ, ENCFF018NEO 652472029 ENCODE Processing Pipeline f5f51870bab4fbc18c10bf65978d95b1 https://www.encodeproject.org/files/ENCFF847DDB/@@download/ENCFF847DDB.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF301OIB bigWig signal p-value ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 485053620 ENCODE Processing Pipeline e4bd5301df0bac496466ff25e1a91228 https://www.encodeproject.org/files/ENCFF301OIB/@@download/ENCFF301OIB.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF852GDN bigWig signal p-value ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF641XAS, ENCFF893WLX 348604359 ENCODE Processing Pipeline fc5bb055a71eda487a3cb1d97f1148de https://www.encodeproject.org/files/ENCFF852GDN/@@download/ENCFF852GDN.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF122RAN bigWig signal p-value ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF641XAS, ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 466153770 ENCODE Processing Pipeline 054b24ece3e7a352bb610d2da3b28171 https://www.encodeproject.org/files/ENCFF122RAN/@@download/ENCFF122RAN.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF977GWQ bigWig fold change over control ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 347612144 ENCODE Processing Pipeline 380daf1be961d659f84a31e7f7a43ecf https://www.encodeproject.org/files/ENCFF977GWQ/@@download/ENCFF977GWQ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF703BHO bigWig fold change over control ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF641XAS, ENCFF893WLX 257494336 ENCODE Processing Pipeline f1f449e8d6954ca739ab0a93ab512872 https://www.encodeproject.org/files/ENCFF703BHO/@@download/ENCFF703BHO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF128VVT bigWig fold change over control ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF641XAS, ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 549522883 ENCODE Processing Pipeline 8df5ca4a2d0d611d1eba7c425d52e6fd https://www.encodeproject.org/files/ENCFF128VVT/@@download/ENCFF128VVT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF490UJP bed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 6047341 ENCODE Processing Pipeline 5d52d3a70bc57e7c51b35b9c71dacfbf https://www.encodeproject.org/files/ENCFF490UJP/@@download/ENCFF490UJP.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF691FKN bed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF641XAS, ENCFF847DDB, ENCFF893WLX, ENCFF951ALL 6659375 ENCODE Processing Pipeline 4924d2ce9f744e172089e9ef0656dde4 https://www.encodeproject.org/files/ENCFF691FKN/@@download/ENCFF691FKN.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF806WJV bed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF641XAS, ENCFF893WLX 5749483 ENCODE Processing Pipeline bf93c7d3d1cb3d40e48c4872bfe46a64 https://www.encodeproject.org/files/ENCFF806WJV/@@download/ENCFF806WJV.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF418XRL bigBed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF490UJP 12696152 ENCODE Processing Pipeline db408182d05d0c4671cd82fe04012614 https://www.encodeproject.org/files/ENCFF418XRL/@@download/ENCFF418XRL.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF404BEQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF806WJV 12502666 ENCODE Processing Pipeline 9b06fcf2499ce2b9a07aaba0b659c25f https://www.encodeproject.org/files/ENCFF404BEQ/@@download/ENCFF404BEQ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF717LRR bigBed narrowPeak peaks and background as input for IDR ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF691FKN 12619302 ENCODE Processing Pipeline d93dfe83d5a9e2edae55820caa74d82a https://www.encodeproject.org/files/ENCFF717LRR/@@download/ENCFF717LRR.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF127IMK bed narrowPeak conservative idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF490UJP, ENCFF547MET, ENCFF691FKN, ENCFF806WJV 621069 ENCODE Processing Pipeline 421ac940d02c695d122d1c38a7c2158a https://www.encodeproject.org/files/ENCFF127IMK/@@download/ENCFF127IMK.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF946WSQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF127IMK 1280906 ENCODE Processing Pipeline 6df66fa3f857c9c74f6cd6ee31abb614 https://www.encodeproject.org/files/ENCFF946WSQ/@@download/ENCFF946WSQ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF128DSQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF676PFD 1338619 ENCODE Processing Pipeline 0328de9b95c90ae8c830b9ebdb276ca8 https://www.encodeproject.org/files/ENCFF128DSQ/@@download/ENCFF128DSQ.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF676PFD bed narrowPeak optimal idr thresholded peaks ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF490UJP, ENCFF547MET, ENCFF691FKN, ENCFF806WJV 660076 ENCODE Processing Pipeline a17122ab6e27dcfc43d3d2bd09d8f695 https://www.encodeproject.org/files/ENCFF676PFD/@@download/ENCFF676PFD.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF002BWQ fastq reads ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1301107617 Bing Ren, UCSD 5612bdd307ce79029f74322d1b6873fe SRA:SRR3651471 https://www.encodeproject.org/files/ENCFF002BWQ/@@download/ENCFF002BWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYA/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF002BWM fastq reads ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1156091856 Bing Ren, UCSD 3920ebb21082c1d1664a573c5c24f799 SRA:SRR3651472 https://www.encodeproject.org/files/ENCFF002BWM/@@download/ENCFF002BWM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXY/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF524HTY bam alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWQ, ENCFF806TVZ 1074287318 ENCODE Processing Pipeline 2fabb7cc18f3e2b76121f974cfefb428 https://www.encodeproject.org/files/ENCFF524HTY/@@download/ENCFF524HTY.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF091KCX bam alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWM, ENCFF806TVZ 953858913 ENCODE Processing Pipeline c0e516276962a26738be315b0987de32 https://www.encodeproject.org/files/ENCFF091KCX/@@download/ENCFF091KCX.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF058AOA bed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF091KCX, ENCFF098KIR 1606289 ENCODE Processing Pipeline b2f2ee23dbaf943a4157dbe80d6d6a6f https://www.encodeproject.org/files/ENCFF058AOA/@@download/ENCFF058AOA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF185SBQ bed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF091KCX, ENCFF098KIR, ENCFF524HTY 1441645 ENCODE Processing Pipeline d02c8f91c72dcebf8729dcef766b220c https://www.encodeproject.org/files/ENCFF185SBQ/@@download/ENCFF185SBQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF437HXW bigBed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF058AOA 4599332 ENCODE Processing Pipeline dc36eda521144a18daa7c15e862193a5 https://www.encodeproject.org/files/ENCFF437HXW/@@download/ENCFF437HXW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF309TUT bigBed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF878WIA 4875793 ENCODE Processing Pipeline 96cb7440d13ffdc35b666b66b0acc26b https://www.encodeproject.org/files/ENCFF309TUT/@@download/ENCFF309TUT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF878WIA bed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF524HTY 1706227 ENCODE Processing Pipeline 3956bf8e1c62cc710e1170fd484d6261 https://www.encodeproject.org/files/ENCFF878WIA/@@download/ENCFF878WIA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF114LDX bigBed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF185SBQ 4118193 ENCODE Processing Pipeline 1a7edac882c42f26b4a846bba0e46d19 https://www.encodeproject.org/files/ENCFF114LDX/@@download/ENCFF114LDX.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF799SRW bigWig signal p-value ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF524HTY 508501249 ENCODE Processing Pipeline 00ba00a4f914d26f769552f4e87a7ef6 https://www.encodeproject.org/files/ENCFF799SRW/@@download/ENCFF799SRW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF195MON bigWig signal p-value ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF091KCX, ENCFF098KIR 426509663 ENCODE Processing Pipeline 5960bfc3d6c4645a359690b76a4c79c7 https://www.encodeproject.org/files/ENCFF195MON/@@download/ENCFF195MON.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF699HDK bigWig signal p-value ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF091KCX, ENCFF098KIR, ENCFF524HTY 549823931 ENCODE Processing Pipeline 4a966b5c02be5c82e473fc228c9d2cb1 https://www.encodeproject.org/files/ENCFF699HDK/@@download/ENCFF699HDK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF309OJX bigWig fold change over control ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF524HTY 479603692 ENCODE Processing Pipeline b9375420c107185becda3ad5e71debaa https://www.encodeproject.org/files/ENCFF309OJX/@@download/ENCFF309OJX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF631LVP bigWig fold change over control ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF091KCX, ENCFF098KIR 453018954 ENCODE Processing Pipeline c5d734d6459f8beb90ad19adeaef8a07 https://www.encodeproject.org/files/ENCFF631LVP/@@download/ENCFF631LVP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF260WSG bigBed narrowPeak replicated peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF166HFY 3697668 ENCODE Processing Pipeline a2009eb6df5cb9400f768f4cf93158b3 https://www.encodeproject.org/files/ENCFF260WSG/@@download/ENCFF260WSG.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF261FBN bigWig fold change over control ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF091KCX, ENCFF098KIR, ENCFF524HTY 745970999 ENCODE Processing Pipeline c3e8ebd678dfb532ddfb8f68b9621def https://www.encodeproject.org/files/ENCFF261FBN/@@download/ENCFF261FBN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF166HFY bed narrowPeak replicated peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF058AOA, ENCFF185SBQ, ENCFF878WIA 1742662 ENCODE Processing Pipeline ff6183f215c1e4bf8d2855ca57163749 https://www.encodeproject.org/files/ENCFF166HFY/@@download/ENCFF166HFY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF133BVQ bam unfiltered alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWM, ENCFF018NEO 1457347472 ENCODE Processing Pipeline bfc6c560c1c71c669556cbb1b7642983 https://www.encodeproject.org/files/ENCFF133BVQ/@@download/ENCFF133BVQ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF999SDS bam unfiltered alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWQ, ENCFF018NEO 1634548095 ENCODE Processing Pipeline 0c5cf9cef4a3b19292f5dc27c6e56104 https://www.encodeproject.org/files/ENCFF999SDS/@@download/ENCFF999SDS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF431CSN bam alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWQ, ENCFF018NEO 1074049225 ENCODE Processing Pipeline 200fbdaf760afe88d576d901b97a4925 https://www.encodeproject.org/files/ENCFF431CSN/@@download/ENCFF431CSN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF149TQU bam alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWM, ENCFF018NEO 953654965 ENCODE Processing Pipeline 237196328e23760d81d76e650a5d9646 https://www.encodeproject.org/files/ENCFF149TQU/@@download/ENCFF149TQU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF150FLE bigBed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF040YIP 4876102 ENCODE Processing Pipeline 95f5f5863c52017007ad64d5190d2f38 https://www.encodeproject.org/files/ENCFF150FLE/@@download/ENCFF150FLE.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF040YIP bed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF431CSN, ENCFF855ISH 1706126 ENCODE Processing Pipeline 4dc5b5851913ccb030b4f8403ace365d https://www.encodeproject.org/files/ENCFF040YIP/@@download/ENCFF040YIP.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF448XNW bed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF149TQU, ENCFF855ISH 1085830 ENCODE Processing Pipeline 419e268fabdf2ae15a87898e5594822b https://www.encodeproject.org/files/ENCFF448XNW/@@download/ENCFF448XNW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF918QBM bigBed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF448XNW 3209090 ENCODE Processing Pipeline c91bc9482f4d0eb5ab9c63f2460ad18d https://www.encodeproject.org/files/ENCFF918QBM/@@download/ENCFF918QBM.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF508BXQ bed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF149TQU, ENCFF431CSN, ENCFF855ISH 1441785 ENCODE Processing Pipeline 44f8696f39df9aef757aaa672811f873 https://www.encodeproject.org/files/ENCFF508BXQ/@@download/ENCFF508BXQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF474PBK bigBed narrowPeak peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF508BXQ 4119273 ENCODE Processing Pipeline 7b44a2d45b8605fb08ff316c83fb9234 https://www.encodeproject.org/files/ENCFF474PBK/@@download/ENCFF474PBK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF848UDB bigWig signal p-value ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF431CSN, ENCFF855ISH 508507820 ENCODE Processing Pipeline c9cf9e9474ee9e994d48f4a0f2c5e76c https://www.encodeproject.org/files/ENCFF848UDB/@@download/ENCFF848UDB.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF884WIU bigWig signal p-value ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF149TQU, ENCFF855ISH 281591430 ENCODE Processing Pipeline 0706b2e5facdcecc3c1b0d0966fdef8f https://www.encodeproject.org/files/ENCFF884WIU/@@download/ENCFF884WIU.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF118FRD bigWig fold change over control ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF431CSN, ENCFF855ISH 477851212 ENCODE Processing Pipeline cc25dd93eafc9b88241db4e476dd97f0 https://www.encodeproject.org/files/ENCFF118FRD/@@download/ENCFF118FRD.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF547ZRR bigWig signal p-value ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF149TQU, ENCFF431CSN, ENCFF855ISH 549605341 ENCODE Processing Pipeline 68a0dcf73b88b8154af707d28ee5b723 https://www.encodeproject.org/files/ENCFF547ZRR/@@download/ENCFF547ZRR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF798WOS bigWig fold change over control ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF149TQU, ENCFF855ISH 347758112 ENCODE Processing Pipeline f51271d3d3ef52fec5f08dc2acfc6244 https://www.encodeproject.org/files/ENCFF798WOS/@@download/ENCFF798WOS.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF424MAS bigBed narrowPeak replicated peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF700WUD 3513275 ENCODE Processing Pipeline 2f1ca494ca938d9458710fa986b27f04 https://www.encodeproject.org/files/ENCFF424MAS/@@download/ENCFF424MAS.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF681GAF bigWig fold change over control ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF149TQU, ENCFF431CSN, ENCFF855ISH 737777952 ENCODE Processing Pipeline f761ac1620f8ce723da78d33d45827f6 https://www.encodeproject.org/files/ENCFF681GAF/@@download/ENCFF681GAF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF700WUD bed narrowPeak replicated peaks ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF040YIP, ENCFF448XNW, ENCFF508BXQ 1643139 ENCODE Processing Pipeline 65103ab0b4354bc09f754469d3da459f https://www.encodeproject.org/files/ENCFF700WUD/@@download/ENCFF700WUD.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF441BJJ fastq reads ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1270481063 Bing Ren, UCSD 3fb992c6501d95ff8c85b317f367a8eb SRA:SRR3651754 https://www.encodeproject.org/files/ENCFF441BJJ/@@download/ENCFF441BJJ.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF636CUM fastq reads ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2670705841 Bing Ren, UCSD 0f94a5bc596beb2cc11ca757d6aaeb24 SRA:SRR3651756 https://www.encodeproject.org/files/ENCFF636CUM/@@download/ENCFF636CUM.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF824WNR fastq reads ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 3620983964 Bing Ren, UCSD d17dc60cff4d0b02abf9e82a05f4c5e5 SRA:SRR3651755 https://www.encodeproject.org/files/ENCFF824WNR/@@download/ENCFF824WNR.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF081EMS bam alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF441BJJ, ENCFF806TVZ, ENCFF824WNR 3982097668 ENCODE Processing Pipeline ef56d36fb1a5e440c68fd07987f2cc57 https://www.encodeproject.org/files/ENCFF081EMS/@@download/ENCFF081EMS.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF881FJP bam alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF636CUM, ENCFF806TVZ 2280745382 ENCODE Processing Pipeline eda2152ae376bc22017f447cae227c12 https://www.encodeproject.org/files/ENCFF881FJP/@@download/ENCFF881FJP.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF894XEQ bam unfiltered alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF441BJJ, ENCFF824WNR 5848626701 ENCODE Processing Pipeline ee9fb401d25d22e43c3aa6564eebdfb2 https://www.encodeproject.org/files/ENCFF894XEQ/@@download/ENCFF894XEQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF634NAV bam alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF441BJJ, ENCFF824WNR 3981334614 ENCODE Processing Pipeline 7ddb47b07bf0beca483b22b504878ce3 https://www.encodeproject.org/files/ENCFF634NAV/@@download/ENCFF634NAV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF905TFJ fastq reads ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 306435172 Bing Ren, UCSD a8a1397b619b7b0110f4b7297e9bcdb1 SRA:SRR3651757 https://www.encodeproject.org/files/ENCFF905TFJ/@@download/ENCFF905TFJ.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF044KKF bam unfiltered alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF636CUM, ENCFF905TFJ 3739698549 ENCODE Processing Pipeline 6dca018ae99f203d8cbb0cae53012789 https://www.encodeproject.org/files/ENCFF044KKF/@@download/ENCFF044KKF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF209HPI bam alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF636CUM, ENCFF905TFJ 2613993051 ENCODE Processing Pipeline d75f6d9cb454c71ca6bd5b95e169796f https://www.encodeproject.org/files/ENCFF209HPI/@@download/ENCFF209HPI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF756GQQ fastq reads ENCSR275BEG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1389654289 Richard Myers, HAIB f60602935e639f0a5b75de9b21665bae SRA:SRR5111361 https://www.encodeproject.org/files/ENCFF756GQQ/@@download/ENCFF756GQQ.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF017GWO bam unfiltered alignments ENCSR275BEG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF756GQQ 1503022597 ENCODE Processing Pipeline 54a19141ff9ea026e26ae6a3b092395b https://www.encodeproject.org/files/ENCFF017GWO/@@download/ENCFF017GWO.bam mm10 released insufficient read depth for broad peaks control ENCFF715CTH bam alignments ENCSR275BEG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF756GQQ 1158383561 ENCODE Processing Pipeline 07ac0b6e49ce6998f344ba6a9859c6f4 https://www.encodeproject.org/files/ENCFF715CTH/@@download/ENCFF715CTH.bam mm10 released insufficient read depth for broad peaks control ENCFF693ZRB fastq reads ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1706881419 Bing Ren, UCSD 0210b3f5896eb754ce20fc0aff75d16a SRA:SRR3653216 https://www.encodeproject.org/files/ENCFF693ZRB/@@download/ENCFF693ZRB.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released ENCFF683UFM fastq reads ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1590512654 Bing Ren, UCSD 464f359b7abeff7edcdb0311be8b6a8b SRA:SRR3653217 https://www.encodeproject.org/files/ENCFF683UFM/@@download/ENCFF683UFM.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released ENCFF602NFV bam alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF683UFM, ENCFF806TVZ 1508922428 ENCODE Processing Pipeline 00c5dfecd23c18d98a65d89017d8eadb https://www.encodeproject.org/files/ENCFF602NFV/@@download/ENCFF602NFV.bam mm10-minimal archived ENCFF208MCV bam alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF693ZRB, ENCFF806TVZ 1609892480 ENCODE Processing Pipeline 9cd6040f38bc59e8ebe9ba5a69761b09 https://www.encodeproject.org/files/ENCFF208MCV/@@download/ENCFF208MCV.bam mm10-minimal archived ENCFF376OTW bed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF602NFV 584964 ENCODE Processing Pipeline 1a1dfe71e8edfff4eac5192ab5d7ceee https://www.encodeproject.org/files/ENCFF376OTW/@@download/ENCFF376OTW.bed.gz mm10-minimal archived ENCFF758NTY bed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF208MCV, ENCFF405EMM, ENCFF602NFV, ENCFF986JLW 1103164 ENCODE Processing Pipeline 52f96572c89addf1d715ccacc8773fbc https://www.encodeproject.org/files/ENCFF758NTY/@@download/ENCFF758NTY.bed.gz mm10-minimal archived ENCFF881EUD bigBed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF376OTW 1649829 ENCODE Processing Pipeline 394a93bf1e8c7b621716ed76ed3cc3ff https://www.encodeproject.org/files/ENCFF881EUD/@@download/ENCFF881EUD.bigBed mm10-minimal archived ENCFF675EFT bigBed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF758NTY 2777039 ENCODE Processing Pipeline 647a166782cbb3349dbb29eb3c1f6e11 https://www.encodeproject.org/files/ENCFF675EFT/@@download/ENCFF675EFT.bigBed mm10-minimal archived ENCFF575RSR bed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF208MCV, ENCFF986JLW 808444 ENCODE Processing Pipeline c0b7a44e8a1bd2207c45eb940f5943c5 https://www.encodeproject.org/files/ENCFF575RSR/@@download/ENCFF575RSR.bed.gz mm10-minimal archived ENCFF763OLA bigBed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF575RSR 2127811 ENCODE Processing Pipeline bf42074dd19a1bccd20de71ddf7aef8d https://www.encodeproject.org/files/ENCFF763OLA/@@download/ENCFF763OLA.bigBed mm10-minimal archived ENCFF447GEN bigWig signal p-value ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF208MCV, ENCFF986JLW 684483940 ENCODE Processing Pipeline 47e9a0199bd184812b3bf68a575342af https://www.encodeproject.org/files/ENCFF447GEN/@@download/ENCFF447GEN.bigWig mm10-minimal archived ENCFF761CHY bigWig signal p-value ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF602NFV 702072025 ENCODE Processing Pipeline 7ba937b08b3124e86fbafc7ffc9dc63c https://www.encodeproject.org/files/ENCFF761CHY/@@download/ENCFF761CHY.bigWig mm10-minimal archived ENCFF713LUE bigWig signal p-value ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF208MCV, ENCFF405EMM, ENCFF602NFV, ENCFF986JLW 1178705061 ENCODE Processing Pipeline 5a387d10a5d91edfe04bbabe4e0fa2b4 https://www.encodeproject.org/files/ENCFF713LUE/@@download/ENCFF713LUE.bigWig mm10-minimal archived ENCFF750RJR bigWig fold change over control ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF208MCV, ENCFF986JLW 710353299 ENCODE Processing Pipeline acc31170d034e5458af4ade6a182fe5f https://www.encodeproject.org/files/ENCFF750RJR/@@download/ENCFF750RJR.bigWig mm10-minimal archived ENCFF213LIY bigWig fold change over control ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF602NFV 688781655 ENCODE Processing Pipeline 0fb884560e6f73db00d58466edfbf5f3 https://www.encodeproject.org/files/ENCFF213LIY/@@download/ENCFF213LIY.bigWig mm10-minimal archived ENCFF369DBW bigWig fold change over control ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF208MCV, ENCFF405EMM, ENCFF602NFV, ENCFF986JLW 1275704373 ENCODE Processing Pipeline 0fb90d20eb30354e1d3529d502747b1f https://www.encodeproject.org/files/ENCFF369DBW/@@download/ENCFF369DBW.bigWig mm10-minimal archived ENCFF850ISP bed narrowPeak replicated peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF376OTW, ENCFF575RSR, ENCFF758NTY 460195 ENCODE Processing Pipeline feb63a552682263a933d05709d06d180 https://www.encodeproject.org/files/ENCFF850ISP/@@download/ENCFF850ISP.bed.gz mm10-minimal archived ENCFF100KPU bigBed narrowPeak replicated peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF850ISP 1065078 ENCODE Processing Pipeline ee06a6c3263124634bc489cda99d8411 https://www.encodeproject.org/files/ENCFF100KPU/@@download/ENCFF100KPU.bigBed mm10-minimal archived ENCFF631UKD bam unfiltered alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF683UFM 2193031036 ENCODE Processing Pipeline a46d7f7fe61f64c78ecfcb9f6d6e36ea https://www.encodeproject.org/files/ENCFF631UKD/@@download/ENCFF631UKD.bam mm10 released ENCFF544KZW bam unfiltered alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF693ZRB 2337392948 ENCODE Processing Pipeline d75f73e573a13e224a69fa2318635f3f https://www.encodeproject.org/files/ENCFF544KZW/@@download/ENCFF544KZW.bam mm10 released ENCFF304RDU bam alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF683UFM 1508543469 ENCODE Processing Pipeline 38b6452c401acf4e68229fddb0c8d4d5 https://www.encodeproject.org/files/ENCFF304RDU/@@download/ENCFF304RDU.bam mm10 released ENCFF509BWJ bam alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF693ZRB 1609477763 ENCODE Processing Pipeline 72f5e5deb914baf6d2edc816c1389c95 https://www.encodeproject.org/files/ENCFF509BWJ/@@download/ENCFF509BWJ.bam mm10 released ENCFF840QYY bed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF509BWJ, ENCFF970FNZ 808854 ENCODE Processing Pipeline e09787a7db74edd4c68ae0c8c7ec84f9 https://www.encodeproject.org/files/ENCFF840QYY/@@download/ENCFF840QYY.bed.gz mm10 released ENCFF160TQJ bed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF304RDU, ENCFF614XRG 585074 ENCODE Processing Pipeline e2c9b58e5bd437c8e7243813e1c9af0c https://www.encodeproject.org/files/ENCFF160TQJ/@@download/ENCFF160TQJ.bed.gz mm10 released ENCFF015RFV bed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF304RDU, ENCFF509BWJ, ENCFF614XRG, ENCFF970FNZ 1065787 ENCODE Processing Pipeline 8549af697bd6102b419d406c887939ae https://www.encodeproject.org/files/ENCFF015RFV/@@download/ENCFF015RFV.bed.gz mm10 released ENCFF734ZII bigBed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF840QYY 2129324 ENCODE Processing Pipeline f397f55c8cfb675a4c0e6c82daabdb9c https://www.encodeproject.org/files/ENCFF734ZII/@@download/ENCFF734ZII.bigBed mm10 released ENCFF048FLG bigBed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF160TQJ 1650303 ENCODE Processing Pipeline a755dbcc6167e80cc7cbdba9ff5b9908 https://www.encodeproject.org/files/ENCFF048FLG/@@download/ENCFF048FLG.bigBed mm10 released ENCFF204BEA bigBed narrowPeak peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF015RFV 2692065 ENCODE Processing Pipeline 6d16765cb46c86e9cfb4b657a75764ca https://www.encodeproject.org/files/ENCFF204BEA/@@download/ENCFF204BEA.bigBed mm10 released ENCFF686SQT bigWig signal p-value ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF509BWJ, ENCFF970FNZ 663070437 ENCODE Processing Pipeline cbbcb787913829c3a34ebba22e6ecad0 https://www.encodeproject.org/files/ENCFF686SQT/@@download/ENCFF686SQT.bigWig mm10 released ENCFF319VFM bigWig signal p-value ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF304RDU, ENCFF614XRG 686934208 ENCODE Processing Pipeline 17e2a56f61bf102fe37bf9c8455c6708 https://www.encodeproject.org/files/ENCFF319VFM/@@download/ENCFF319VFM.bigWig mm10 released ENCFF640EBL bigWig signal p-value ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF304RDU, ENCFF509BWJ, ENCFF614XRG, ENCFF970FNZ 994960456 ENCODE Processing Pipeline b3e3634617a8d508e409e2a52414df5e https://www.encodeproject.org/files/ENCFF640EBL/@@download/ENCFF640EBL.bigWig mm10 released ENCFF182ZZM bigWig fold change over control ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF509BWJ, ENCFF970FNZ 711786374 ENCODE Processing Pipeline c78e12cd2371e515fe8b9dd87631d33d https://www.encodeproject.org/files/ENCFF182ZZM/@@download/ENCFF182ZZM.bigWig mm10 released ENCFF357PFD bigWig fold change over control ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF304RDU, ENCFF614XRG 688573747 ENCODE Processing Pipeline 7c461cdd7fcc9a43bee5d82f97f2f682 https://www.encodeproject.org/files/ENCFF357PFD/@@download/ENCFF357PFD.bigWig mm10 released ENCFF704GSX bigWig fold change over control ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF304RDU, ENCFF509BWJ, ENCFF614XRG, ENCFF970FNZ 1253605961 ENCODE Processing Pipeline ccc86cbadcd045ef0c460fbc304a1819 https://www.encodeproject.org/files/ENCFF704GSX/@@download/ENCFF704GSX.bigWig mm10 released ENCFF434LSI bed narrowPeak replicated peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF015RFV, ENCFF160TQJ, ENCFF840QYY 520998 ENCODE Processing Pipeline 5bdb3dc404681a551809c911e7037a70 https://www.encodeproject.org/files/ENCFF434LSI/@@download/ENCFF434LSI.bed.gz mm10 released ENCFF036XKS bigBed narrowPeak replicated peaks ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF434LSI 1199399 ENCODE Processing Pipeline 01c6905a506072aee4f27cd9b668867c https://www.encodeproject.org/files/ENCFF036XKS/@@download/ENCFF036XKS.bigBed mm10 released ENCFF002ALF fastq reads ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1737497579 Bing Ren, UCSD 29e1b4e8cd57d32a9ce84b1a8c7360d9 SRA:SRR3651911 https://www.encodeproject.org/files/ENCFF002ALF/@@download/ENCFF002ALF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQH/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002ALH fastq reads ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2335791742 Bing Ren, UCSD 368abd1218f91dfa253271a40b3ac939 SRA:SRR3651910 https://www.encodeproject.org/files/ENCFF002ALH/@@download/ENCFF002ALH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQD/ released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF703JQA bam alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALH, ENCFF806TVZ 1491373518 ENCODE Processing Pipeline 1e01e3ad2c27c1b81e4128a6af3c16fa https://www.encodeproject.org/files/ENCFF703JQA/@@download/ENCFF703JQA.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF231NAQ bam alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALF, ENCFF806TVZ 1078283436 ENCODE Processing Pipeline 76fb01283c2efb3459efaa6103db244d https://www.encodeproject.org/files/ENCFF231NAQ/@@download/ENCFF231NAQ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF886GJG bed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF231NAQ, ENCFF999ZTB 841254 ENCODE Processing Pipeline f4279a9dd71b9a73ed9dff665780bcac https://www.encodeproject.org/files/ENCFF886GJG/@@download/ENCFF886GJG.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF987YDO bed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF703JQA, ENCFF999ZTB 768937 ENCODE Processing Pipeline 89e305b5436c568c99c7357962568207 https://www.encodeproject.org/files/ENCFF987YDO/@@download/ENCFF987YDO.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF108NNY bed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF231NAQ, ENCFF703JQA, ENCFF999ZTB 758873 ENCODE Processing Pipeline e9f103e6fa59bec32bec055b9f11a993 https://www.encodeproject.org/files/ENCFF108NNY/@@download/ENCFF108NNY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF830AND bigBed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF987YDO 2305737 ENCODE Processing Pipeline 9db8261a8fe57611112ae5fe4f353e26 https://www.encodeproject.org/files/ENCFF830AND/@@download/ENCFF830AND.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF298SSP bigBed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF886GJG 2491386 ENCODE Processing Pipeline c05dbce303ba69bcd1ca5ab223a22ddd https://www.encodeproject.org/files/ENCFF298SSP/@@download/ENCFF298SSP.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF716BXZ bigBed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF108NNY 2279397 ENCODE Processing Pipeline 965b38301fba19175dde2a08f0908175 https://www.encodeproject.org/files/ENCFF716BXZ/@@download/ENCFF716BXZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF226STC bigWig signal p-value ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF703JQA, ENCFF999ZTB 335850756 ENCODE Processing Pipeline 1a5da3a067ba4b578c521e0036358ef3 https://www.encodeproject.org/files/ENCFF226STC/@@download/ENCFF226STC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF785RFT bigWig signal p-value ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF231NAQ, ENCFF999ZTB 324375495 ENCODE Processing Pipeline 1634786e040084369e6639e1e3322afd https://www.encodeproject.org/files/ENCFF785RFT/@@download/ENCFF785RFT.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF548SUN bigWig signal p-value ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF231NAQ, ENCFF703JQA, ENCFF999ZTB 372994602 ENCODE Processing Pipeline 7797ca1dec3604ccfc8a0456fd80088b https://www.encodeproject.org/files/ENCFF548SUN/@@download/ENCFF548SUN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF016CAI bigWig fold change over control ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF231NAQ, ENCFF999ZTB 301281017 ENCODE Processing Pipeline 1aaa64a53527a725b38f74f9aec22137 https://www.encodeproject.org/files/ENCFF016CAI/@@download/ENCFF016CAI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF665KSW bigWig fold change over control ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF703JQA, ENCFF999ZTB 356405236 ENCODE Processing Pipeline e43607207c4a5c3de31d945c0e8b1c97 https://www.encodeproject.org/files/ENCFF665KSW/@@download/ENCFF665KSW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF172QHO bigWig fold change over control ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF231NAQ, ENCFF703JQA, ENCFF999ZTB 569459402 ENCODE Processing Pipeline 9215f0d65b0c5400e9e5443f67ec09e3 https://www.encodeproject.org/files/ENCFF172QHO/@@download/ENCFF172QHO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF347ACZ bed narrowPeak replicated peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF108NNY, ENCFF886GJG, ENCFF987YDO 972807 ENCODE Processing Pipeline 850b55980367b35f55c30e14d0d66cca https://www.encodeproject.org/files/ENCFF347ACZ/@@download/ENCFF347ACZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF488XIO bigBed narrowPeak replicated peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF347ACZ 2164517 ENCODE Processing Pipeline a7a0e67c16fbbe8804d774c5c0a2b37f https://www.encodeproject.org/files/ENCFF488XIO/@@download/ENCFF488XIO.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF281KTU bam unfiltered alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALH, ENCFF018NEO 2339770627 ENCODE Processing Pipeline 841975cf7b0eb1f5977dadb88d0a7dd6 https://www.encodeproject.org/files/ENCFF281KTU/@@download/ENCFF281KTU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF872ZHF bam unfiltered alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALF, ENCFF018NEO 1763759799 ENCODE Processing Pipeline 02c82ddae524165b046772da139a516a https://www.encodeproject.org/files/ENCFF872ZHF/@@download/ENCFF872ZHF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF377MNZ bam alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALF, ENCFF018NEO 1078193650 ENCODE Processing Pipeline 3235f992dcd7d8853577c5d042f9a4e3 https://www.encodeproject.org/files/ENCFF377MNZ/@@download/ENCFF377MNZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF582XLM bam alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALH, ENCFF018NEO 1491242927 ENCODE Processing Pipeline b3db44c2eada19a0134a6a8a422f9dda https://www.encodeproject.org/files/ENCFF582XLM/@@download/ENCFF582XLM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF985APH bed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399OUP, ENCFF582XLM, ENCFF863NZX 766348 ENCODE Processing Pipeline b00db4330c88645613a528dcee1f5ba8 https://www.encodeproject.org/files/ENCFF985APH/@@download/ENCFF985APH.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF833WGJ bed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF377MNZ, ENCFF863NZX 677695 ENCODE Processing Pipeline ee268823f934357888fe3d726839cb6f https://www.encodeproject.org/files/ENCFF833WGJ/@@download/ENCFF833WGJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF884ATM bed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377MNZ, ENCFF399OUP, ENCFF582XLM, ENCFF863NZX 753304 ENCODE Processing Pipeline 26aeab580d951992261945ab66d98f36 https://www.encodeproject.org/files/ENCFF884ATM/@@download/ENCFF884ATM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF225WGW bigBed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF985APH 2299720 ENCODE Processing Pipeline 328daa07d16c8da20eb7ee0876f036e9 https://www.encodeproject.org/files/ENCFF225WGW/@@download/ENCFF225WGW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF200SVL bigBed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF833WGJ 2073250 ENCODE Processing Pipeline 81c3c453c1347dce2a9a80080a1a01b7 https://www.encodeproject.org/files/ENCFF200SVL/@@download/ENCFF200SVL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF469DRQ bigBed narrowPeak peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF884ATM 2252925 ENCODE Processing Pipeline 57b96a84c9e75a2cf437763b84558b9d https://www.encodeproject.org/files/ENCFF469DRQ/@@download/ENCFF469DRQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF333CXR bigWig signal p-value ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399OUP, ENCFF582XLM, ENCFF863NZX 338393741 ENCODE Processing Pipeline 247910a3c92891206450f1aa3134383e https://www.encodeproject.org/files/ENCFF333CXR/@@download/ENCFF333CXR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF960NYY bigWig signal p-value ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF377MNZ, ENCFF863NZX 231109421 ENCODE Processing Pipeline 212b715edcdb4e4ac5bc92c87ebb78ca https://www.encodeproject.org/files/ENCFF960NYY/@@download/ENCFF960NYY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF933EJJ bigWig signal p-value ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377MNZ, ENCFF399OUP, ENCFF582XLM, ENCFF863NZX 327537871 ENCODE Processing Pipeline 49d532209f00cf2a6ad0b237323f70e6 https://www.encodeproject.org/files/ENCFF933EJJ/@@download/ENCFF933EJJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF758DFD bigWig fold change over control ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF399OUP, ENCFF582XLM, ENCFF863NZX 359026112 ENCODE Processing Pipeline b331a4214ed5ebe4d9bd9725a2f67b44 https://www.encodeproject.org/files/ENCFF758DFD/@@download/ENCFF758DFD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF275WHD bigWig fold change over control ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377MNZ, ENCFF399OUP, ENCFF582XLM, ENCFF863NZX 527778272 ENCODE Processing Pipeline 420e69630f38e5eabd4422177ddbea0e https://www.encodeproject.org/files/ENCFF275WHD/@@download/ENCFF275WHD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF195ZRJ bigWig fold change over control ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF377MNZ, ENCFF863NZX 265763622 ENCODE Processing Pipeline fe5b38f93a004bcc5af8849c32efa715 https://www.encodeproject.org/files/ENCFF195ZRJ/@@download/ENCFF195ZRJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF427EVM bed narrowPeak replicated peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF833WGJ, ENCFF884ATM, ENCFF985APH 916192 ENCODE Processing Pipeline 43f8e944cf168d075363ef8f6e730de0 https://www.encodeproject.org/files/ENCFF427EVM/@@download/ENCFF427EVM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF020HWZ bigBed narrowPeak replicated peaks ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF427EVM 2078371 ENCODE Processing Pipeline a7dae8f789036adde6c6e3afd8826c27 https://www.encodeproject.org/files/ENCFF020HWZ/@@download/ENCFF020HWZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF033ZXY fastq reads ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 50 single-ended 1761327240 Bing Ren, UCSD 7fca3e220df10f9ef5f4ea7a0824bde9 SRA:SRR3652710 https://www.encodeproject.org/files/ENCFF033ZXY/@@download/ENCFF033ZXY.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF159DAK fastq reads ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 2 50 single-ended 421829512 Bing Ren, UCSD c429caabd0f0a6ac9194c4205df25e23 SRA:SRR3652711 https://www.encodeproject.org/files/ENCFF159DAK/@@download/ENCFF159DAK.fastq.gz Illumina HiSeq 2000 /files/ENCFF291VOE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF215NAV fastq reads ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 50 single-ended 2272264981 Bing Ren, UCSD 9d4769698a32085ee8d8e076aafc9c8a SRA:SRR3652712 https://www.encodeproject.org/files/ENCFF215NAV/@@download/ENCFF215NAV.fastq.gz Illumina HiSeq 2000 /files/ENCFF661YTO/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF491OGT bam alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF215NAV, ENCFF806TVZ 1235632652 ENCODE Processing Pipeline 52b9c8d6a1fa19048c4c76733e83659a https://www.encodeproject.org/files/ENCFF491OGT/@@download/ENCFF491OGT.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF710FJE bam alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF033ZXY, ENCFF159DAK, ENCFF806TVZ 1079721830 ENCODE Processing Pipeline 9cb1333557b77ad72ca7e3949e80e6bb https://www.encodeproject.org/files/ENCFF710FJE/@@download/ENCFF710FJE.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF719XCK bigBed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF556ATI 2271209 ENCODE Processing Pipeline 9e4f8a69781edf0000bf5162f7dfc6b5 https://www.encodeproject.org/files/ENCFF719XCK/@@download/ENCFF719XCK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF051CWR bed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF002TFZ, ENCFF491OGT, ENCFF792GEI 557874 ENCODE Processing Pipeline 073a367c50dc633e0f01523fdc14be6e https://www.encodeproject.org/files/ENCFF051CWR/@@download/ENCFF051CWR.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF556ATI bed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF002TFZ, ENCFF491OGT, ENCFF710FJE, ENCFF792GEI 913435 ENCODE Processing Pipeline bf6ea81a1f7dbe87dc1e64cf488a1617 https://www.encodeproject.org/files/ENCFF556ATI/@@download/ENCFF556ATI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF949IGB bigBed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF566LKR 1225387 ENCODE Processing Pipeline c632e9604a64521e1ffa220637b29f6d https://www.encodeproject.org/files/ENCFF949IGB/@@download/ENCFF949IGB.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF422CBZ bigBed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF051CWR 1271552 ENCODE Processing Pipeline 0d58847784255bc423f51fc4d2f88c8c https://www.encodeproject.org/files/ENCFF422CBZ/@@download/ENCFF422CBZ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF895EIF bigWig signal p-value ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF002TFZ, ENCFF491OGT, ENCFF792GEI 699448236 ENCODE Processing Pipeline 9999d7395ce541eff4501d1685f128c1 https://www.encodeproject.org/files/ENCFF895EIF/@@download/ENCFF895EIF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF566LKR bed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF002TFZ, ENCFF710FJE, ENCFF792GEI 555232 ENCODE Processing Pipeline 29d78ab850f10da1853a410bef2e54ba https://www.encodeproject.org/files/ENCFF566LKR/@@download/ENCFF566LKR.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF174JCL bigWig signal p-value ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF002TFZ, ENCFF710FJE, ENCFF792GEI 784882873 ENCODE Processing Pipeline eebde0b90bf0b8e8d4abacf77c6e81c5 https://www.encodeproject.org/files/ENCFF174JCL/@@download/ENCFF174JCL.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF288WEK bigWig fold change over control ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF002TFZ, ENCFF710FJE, ENCFF792GEI 707490462 ENCODE Processing Pipeline aab9dd478991f03b0bb92cb231d3e998 https://www.encodeproject.org/files/ENCFF288WEK/@@download/ENCFF288WEK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF601XOQ bigWig signal p-value ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF002TFZ, ENCFF491OGT, ENCFF710FJE, ENCFF792GEI 918261249 ENCODE Processing Pipeline ebed60e0b9c125aeefc0e9e7d0754732 https://www.encodeproject.org/files/ENCFF601XOQ/@@download/ENCFF601XOQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF643EQQ bigWig fold change over control ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF002TFZ, ENCFF491OGT, ENCFF792GEI 724077585 ENCODE Processing Pipeline 0db4365cebaffcb2c14230ece3bb5721 https://www.encodeproject.org/files/ENCFF643EQQ/@@download/ENCFF643EQQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF242FFH bigBed narrowPeak replicated peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF601LEI 635659 ENCODE Processing Pipeline ec67426cb374bcadec043041a05a2094 https://www.encodeproject.org/files/ENCFF242FFH/@@download/ENCFF242FFH.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF576LSF bigWig fold change over control ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF002TFZ, ENCFF491OGT, ENCFF710FJE, ENCFF792GEI 1065088678 ENCODE Processing Pipeline 673a115cefa7b8485b6c4c5c30d00bb0 https://www.encodeproject.org/files/ENCFF576LSF/@@download/ENCFF576LSF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF601LEI bed narrowPeak replicated peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF051CWR, ENCFF556ATI, ENCFF566LKR 256811 ENCODE Processing Pipeline 5f7d8af6ebe7f3f744417c06abc4e864 https://www.encodeproject.org/files/ENCFF601LEI/@@download/ENCFF601LEI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF822ZBD bam unfiltered alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF033ZXY, ENCFF159DAK 2650871211 ENCODE Processing Pipeline 9861d657d8f5bc5b0f495bd8de459aa4 https://www.encodeproject.org/files/ENCFF822ZBD/@@download/ENCFF822ZBD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF622CMH bam unfiltered alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF215NAV 2765131227 ENCODE Processing Pipeline e4bf9803760ef91a9a460c6f0a15ce6c https://www.encodeproject.org/files/ENCFF622CMH/@@download/ENCFF622CMH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF204RVT bam alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF033ZXY, ENCFF159DAK 1079136664 ENCODE Processing Pipeline feb5c7b8ea8f147d48cc405a54e2ed7e https://www.encodeproject.org/files/ENCFF204RVT/@@download/ENCFF204RVT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF403OKB bam alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF215NAV 1235007839 ENCODE Processing Pipeline 85e94ffadde33d504698f12a943fee4e https://www.encodeproject.org/files/ENCFF403OKB/@@download/ENCFF403OKB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF642SYN bed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF403OKB, ENCFF880SQD 548986 ENCODE Processing Pipeline 12302b37baaf42f7b12b78d7f7a62487 https://www.encodeproject.org/files/ENCFF642SYN/@@download/ENCFF642SYN.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF385KLC bigBed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF390IBC 1800680 ENCODE Processing Pipeline d3504f14ae47d6b57a910fdfd2749ae9 https://www.encodeproject.org/files/ENCFF385KLC/@@download/ENCFF385KLC.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF390IBC bed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF204RVT, ENCFF901RYX 862888 ENCODE Processing Pipeline c4df5850ae0bf83578636cfacec3876b https://www.encodeproject.org/files/ENCFF390IBC/@@download/ENCFF390IBC.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF152CWN bigBed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF642SYN 1253691 ENCODE Processing Pipeline d288ebccad63855398935e4bc4671d2e https://www.encodeproject.org/files/ENCFF152CWN/@@download/ENCFF152CWN.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF842EXR bigBed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF399PCF 2214693 ENCODE Processing Pipeline 75e1bd84c5616346e272d90b45293db7 https://www.encodeproject.org/files/ENCFF842EXR/@@download/ENCFF842EXR.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF399PCF bed narrowPeak peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF204RVT, ENCFF403OKB, ENCFF880SQD, ENCFF901RYX 886752 ENCODE Processing Pipeline b6ecb075985c8f0165cb0a8a3df7fd25 https://www.encodeproject.org/files/ENCFF399PCF/@@download/ENCFF399PCF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF656HYX bigWig signal p-value ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF204RVT, ENCFF901RYX 520541305 ENCODE Processing Pipeline 9917ec60b82fe886949b482ad15befba https://www.encodeproject.org/files/ENCFF656HYX/@@download/ENCFF656HYX.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF553KVU bigWig fold change over control ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF403OKB, ENCFF880SQD 592915554 ENCODE Processing Pipeline ca9dd8e2b4b9cd43dc9be05e32429d47 https://www.encodeproject.org/files/ENCFF553KVU/@@download/ENCFF553KVU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF566AZW bigWig signal p-value ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF403OKB, ENCFF880SQD 615011901 ENCODE Processing Pipeline 9d01331298d76362a3faacdb7bc2c7cb https://www.encodeproject.org/files/ENCFF566AZW/@@download/ENCFF566AZW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF766ETL bigWig signal p-value ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF204RVT, ENCFF403OKB, ENCFF880SQD, ENCFF901RYX 1033372822 ENCODE Processing Pipeline 61dab02c50ff3068162e7719a6272464 https://www.encodeproject.org/files/ENCFF766ETL/@@download/ENCFF766ETL.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF457DEB bigWig fold change over control ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF204RVT, ENCFF901RYX 518029202 ENCODE Processing Pipeline a03f6bb7e0d5579ce650345f23d0e4fb https://www.encodeproject.org/files/ENCFF457DEB/@@download/ENCFF457DEB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF718RMZ bigWig fold change over control ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF204RVT, ENCFF403OKB, ENCFF880SQD, ENCFF901RYX 1096006828 ENCODE Processing Pipeline d123a24a7c6979233f682cb57d5a0968 https://www.encodeproject.org/files/ENCFF718RMZ/@@download/ENCFF718RMZ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF416VVP bed narrowPeak replicated peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF390IBC, ENCFF399PCF, ENCFF642SYN 272197 ENCODE Processing Pipeline 5206d8c72d6087f30bc617bd702f3895 https://www.encodeproject.org/files/ENCFF416VVP/@@download/ENCFF416VVP.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF800BPT bigBed narrowPeak replicated peaks ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF416VVP 667790 ENCODE Processing Pipeline 46b36c6275e27cdd92422ac4c5dfc12f https://www.encodeproject.org/files/ENCFF800BPT/@@download/ENCFF800BPT.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF904XXR fastq reads ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 2 50 single-ended 177530620 Bing Ren, UCSD 33c26f11606ea9b48b5f2d3cdbcaff9d SRA:SRR3652487 https://www.encodeproject.org/files/ENCFF904XXR/@@download/ENCFF904XXR.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF702VPD fastq reads ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 363933699 Bing Ren, UCSD 03c75e486fb92e6fefe1c2f5b9cd5198 SRA:SRR3652485 https://www.encodeproject.org/files/ENCFF702VPD/@@download/ENCFF702VPD.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF615FEE fastq reads ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1898895915 Bing Ren, UCSD 0e6fb69e9430f4eb028724fbedb45536 SRA:SRR3652486 https://www.encodeproject.org/files/ENCFF615FEE/@@download/ENCFF615FEE.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF678UYY fastq reads ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2020425736 Bing Ren, UCSD 7bb77fa1bcaa4e6e4af86d0196515fe7 SRA:SRR3652488 https://www.encodeproject.org/files/ENCFF678UYY/@@download/ENCFF678UYY.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF689MSN bam alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF678UYY, ENCFF806TVZ, ENCFF904XXR 2017643138 ENCODE Processing Pipeline 52f81e8ed158781320c6556abf2cf53a https://www.encodeproject.org/files/ENCFF689MSN/@@download/ENCFF689MSN.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF878QEM bam alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF615FEE, ENCFF702VPD, ENCFF806TVZ 2049034558 ENCODE Processing Pipeline 673fcb4fe98c7f8e19fa37fdbffa2c43 https://www.encodeproject.org/files/ENCFF878QEM/@@download/ENCFF878QEM.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF671TFW bigBed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF154GSF 6476438 ENCODE Processing Pipeline 078716940bb45f7e046a58851fa980dd https://www.encodeproject.org/files/ENCFF671TFW/@@download/ENCFF671TFW.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF338ODO bed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF878QEM 2942635 ENCODE Processing Pipeline a409d7e7aee39390af17f8beb970b9d8 https://www.encodeproject.org/files/ENCFF338ODO/@@download/ENCFF338ODO.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF845RHG bigBed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF604RIS 5435200 ENCODE Processing Pipeline 921041c194e5af282010d5e8c94c276c https://www.encodeproject.org/files/ENCFF845RHG/@@download/ENCFF845RHG.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF154GSF bed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF689MSN, ENCFF878QEM, ENCFF980WPU 2927654 ENCODE Processing Pipeline 00b6e162ea55a501cc5d64bef6c7c136 https://www.encodeproject.org/files/ENCFF154GSF/@@download/ENCFF154GSF.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF604RIS bed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF689MSN, ENCFF980WPU 2420349 ENCODE Processing Pipeline 2fc832e6d6f8781a11140bccf47f5501 https://www.encodeproject.org/files/ENCFF604RIS/@@download/ENCFF604RIS.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF748DVU bigBed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF338ODO 6765892 ENCODE Processing Pipeline fc3e49b7bd77bd2f5dc9d37ccee5592e https://www.encodeproject.org/files/ENCFF748DVU/@@download/ENCFF748DVU.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF611KPP bigWig signal p-value ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF878QEM 789634423 ENCODE Processing Pipeline b932cfca9a091e360c4fdbaf46c9622e https://www.encodeproject.org/files/ENCFF611KPP/@@download/ENCFF611KPP.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF605AYX bigWig signal p-value ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF689MSN, ENCFF980WPU 682421401 ENCODE Processing Pipeline 9c6c38a1c533c544387a2186a68e737e https://www.encodeproject.org/files/ENCFF605AYX/@@download/ENCFF605AYX.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF608FJC bigWig signal p-value ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF689MSN, ENCFF878QEM, ENCFF980WPU 1357257738 ENCODE Processing Pipeline 003266b1bbc0ccf17fc6741a612efdce https://www.encodeproject.org/files/ENCFF608FJC/@@download/ENCFF608FJC.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF353WKU bigWig fold change over control ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405LXU, ENCFF878QEM 891290953 ENCODE Processing Pipeline 1622d4309689b9f9269c72ecc7f6f9f5 https://www.encodeproject.org/files/ENCFF353WKU/@@download/ENCFF353WKU.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF866SOE bigWig fold change over control ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF689MSN, ENCFF980WPU 844488728 ENCODE Processing Pipeline e70e5f9f9fd7a4e91bd1548e6d29075b https://www.encodeproject.org/files/ENCFF866SOE/@@download/ENCFF866SOE.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF364GHR bigWig fold change over control ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405LXU, ENCFF689MSN, ENCFF878QEM, ENCFF980WPU 1576005362 ENCODE Processing Pipeline 3c2bc40f50e57022cf0960295253b4ba https://www.encodeproject.org/files/ENCFF364GHR/@@download/ENCFF364GHR.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF897KET bed narrowPeak replicated peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF154GSF, ENCFF338ODO, ENCFF604RIS 2154742 ENCODE Processing Pipeline 552b757474c9f500110bf655dfec73e0 https://www.encodeproject.org/files/ENCFF897KET/@@download/ENCFF897KET.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF588FRZ bigBed narrowPeak replicated peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF897KET 3756344 ENCODE Processing Pipeline 615b5fa7c1467297d15cab2a629c2d80 https://www.encodeproject.org/files/ENCFF588FRZ/@@download/ENCFF588FRZ.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF670RPE bam unfiltered alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF678UYY, ENCFF904XXR 2925660328 ENCODE Processing Pipeline dd56facbd09a31cdf73de19456173901 https://www.encodeproject.org/files/ENCFF670RPE/@@download/ENCFF670RPE.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF859HGP bam unfiltered alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF615FEE, ENCFF702VPD 3004787145 ENCODE Processing Pipeline feb71f66f77a3358c7ec2a90142d4a1e https://www.encodeproject.org/files/ENCFF859HGP/@@download/ENCFF859HGP.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF420MVF bam alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF615FEE, ENCFF702VPD 2048551092 ENCODE Processing Pipeline eaab4a0c528f58c27e74f1652ff0ec62 https://www.encodeproject.org/files/ENCFF420MVF/@@download/ENCFF420MVF.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF173TAZ bam alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF678UYY, ENCFF904XXR 2017170559 ENCODE Processing Pipeline feba9e68f1464da86c464e0747de4d81 https://www.encodeproject.org/files/ENCFF173TAZ/@@download/ENCFF173TAZ.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF323ZPE bed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF420MVF 2942613 ENCODE Processing Pipeline 13e3d6a1528b381f175533377e70a157 https://www.encodeproject.org/files/ENCFF323ZPE/@@download/ENCFF323ZPE.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF423GVC bed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF173TAZ, ENCFF609XDL 2417235 ENCODE Processing Pipeline 02b0a5d50dc9030b23f8316f78fed8ca https://www.encodeproject.org/files/ENCFF423GVC/@@download/ENCFF423GVC.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF261AHR bed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF173TAZ, ENCFF399MAG, ENCFF420MVF, ENCFF609XDL 2954276 ENCODE Processing Pipeline 6cc7ff6ad4db0c5a95e0108e0cdf1a87 https://www.encodeproject.org/files/ENCFF261AHR/@@download/ENCFF261AHR.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF443PNY bigBed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF323ZPE 6768343 ENCODE Processing Pipeline 8084befb0a00a6d810ee926cdf3847e5 https://www.encodeproject.org/files/ENCFF443PNY/@@download/ENCFF443PNY.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF524KOW bigBed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF423GVC 5404623 ENCODE Processing Pipeline 12c97d0f3a91d98bbb77da4ade36f415 https://www.encodeproject.org/files/ENCFF524KOW/@@download/ENCFF524KOW.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF391IXM bigBed narrowPeak peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF261AHR 6578710 ENCODE Processing Pipeline d715738b29a0f91d0bfd9162d7f35f2b https://www.encodeproject.org/files/ENCFF391IXM/@@download/ENCFF391IXM.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF278EDR bigWig signal p-value ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF420MVF 881525871 ENCODE Processing Pipeline bfe8b9c4b1a77af3db5023fcd2307cf1 https://www.encodeproject.org/files/ENCFF278EDR/@@download/ENCFF278EDR.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF808HYM bigWig signal p-value ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF173TAZ, ENCFF609XDL 837801342 ENCODE Processing Pipeline 3f1eae61b9bddb94fd6b976ed56194b3 https://www.encodeproject.org/files/ENCFF808HYM/@@download/ENCFF808HYM.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF947ARD bigWig signal p-value ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF173TAZ, ENCFF399MAG, ENCFF420MVF, ENCFF609XDL 1199414003 ENCODE Processing Pipeline 1e993dfa520845873eaef286c3d07869 https://www.encodeproject.org/files/ENCFF947ARD/@@download/ENCFF947ARD.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF594ULX bigWig fold change over control ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF420MVF 888066614 ENCODE Processing Pipeline 1966cc8450638768d618c7dea2f2030e https://www.encodeproject.org/files/ENCFF594ULX/@@download/ENCFF594ULX.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF630DCE bigWig fold change over control ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF173TAZ, ENCFF609XDL 836504918 ENCODE Processing Pipeline 564e48e9228c365cbad9e981e85d02c5 https://www.encodeproject.org/files/ENCFF630DCE/@@download/ENCFF630DCE.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF772NBP bigWig fold change over control ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF173TAZ, ENCFF399MAG, ENCFF420MVF, ENCFF609XDL 1609580658 ENCODE Processing Pipeline c96d9421499265759e17502048a6c6eb https://www.encodeproject.org/files/ENCFF772NBP/@@download/ENCFF772NBP.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF739FEV bed narrowPeak replicated peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF261AHR, ENCFF323ZPE, ENCFF423GVC 2247654 ENCODE Processing Pipeline 100f9c0725fd1c9d7628b46a8f9d9769 https://www.encodeproject.org/files/ENCFF739FEV/@@download/ENCFF739FEV.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF305BZL bigBed narrowPeak replicated peaks ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF739FEV 3938798 ENCODE Processing Pipeline 1baf712f167a1f744a3ab8ae9d4f92d5 https://www.encodeproject.org/files/ENCFF305BZL/@@download/ENCFF305BZL.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF001KUX bigWig signal ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KUU, ENCFF001KUY 82818861 Bing Ren, UCSD 42a76effd0d11819dc3a7d174cde3cee https://www.encodeproject.org/files/ENCFF001KUX/@@download/ENCFF001KUX.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KUT bigBed broadPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZA 569254 Bing Ren, UCSD 8ad7dbd805f64584ad5a7924860e96e9 https://www.encodeproject.org/files/ENCFF001KUT/@@download/ENCFF001KUT.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KUU bam alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KVG 1579694422 Bing Ren, UCSD 00b04f40db49cb7572a63264c74482a4 https://www.encodeproject.org/files/ENCFF001KUU/@@download/ENCFF001KUU.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KUY bam alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KVH 1766278215 Bing Ren, UCSD cd20f08385aae75f1286b00915a624bd https://www.encodeproject.org/files/ENCFF001KUY/@@download/ENCFF001KUY.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KVG fastq reads ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1588019980 Bing Ren, UCSD 3412a0b5637a13dea4213aabc023e887 https://www.encodeproject.org/files/ENCFF001KVG/@@download/ENCFF001KVG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KVR/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KVH fastq reads ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1761454339 Bing Ren, UCSD 785bc067e3f9536ae1493dfe3b446d0a https://www.encodeproject.org/files/ENCFF001KVH/@@download/ENCFF001KVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KWE/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XZA bed broadPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KUU, ENCFF001KUY 242460 Bing Ren, UCSD 7b7e04879c200e101c9041d400834ce6 https://www.encodeproject.org/files/ENCFF001XZA/@@download/ENCFF001XZA.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF251DZM bam unfiltered alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KVH, ENCFF018NEO 1756415746 ENCODE Processing Pipeline cfb4852263d9aa9eec30b6f8c4cf9868 https://www.encodeproject.org/files/ENCFF251DZM/@@download/ENCFF251DZM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF482CQL bam alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KVH, ENCFF018NEO 768348692 ENCODE Processing Pipeline d19ea20bbc7e40e85923073e9ec86852 https://www.encodeproject.org/files/ENCFF482CQL/@@download/ENCFF482CQL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF638SMA bam unfiltered alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KVG, ENCFF018NEO 1556925331 ENCODE Processing Pipeline c11714e2fc44b256ccaeafd5f2b841fe https://www.encodeproject.org/files/ENCFF638SMA/@@download/ENCFF638SMA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF539RTU bam alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KVG, ENCFF018NEO 598160029 ENCODE Processing Pipeline e4b20d157051f0cf7aa9127c68f60600 https://www.encodeproject.org/files/ENCFF539RTU/@@download/ENCFF539RTU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF970VMF bed narrowPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF314OGN, ENCFF482CQL, ENCFF705BZU 1028064 ENCODE Processing Pipeline cdcb925f7bb27f6091877c052880fd89 https://www.encodeproject.org/files/ENCFF970VMF/@@download/ENCFF970VMF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF101DCR bigWig signal p-value ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF314OGN, ENCFF539RTU, ENCFF705BZU 459610772 ENCODE Processing Pipeline a5a54137441ff5b83aca7259ac98b548 https://www.encodeproject.org/files/ENCFF101DCR/@@download/ENCFF101DCR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF250PJD bigBed narrowPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF458UYQ 2297853 ENCODE Processing Pipeline 52fbb327ab61a637de2ef1997ee2cc75 https://www.encodeproject.org/files/ENCFF250PJD/@@download/ENCFF250PJD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF082EPF bigBed narrowPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF515MTD 1899464 ENCODE Processing Pipeline 7c18673c3a9d18efa260a6139c11a664 https://www.encodeproject.org/files/ENCFF082EPF/@@download/ENCFF082EPF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF087POO bigWig signal p-value ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF314OGN, ENCFF482CQL, ENCFF539RTU, ENCFF705BZU 678214974 ENCODE Processing Pipeline a81851bc6208ed89af5395fa1e0fda6c https://www.encodeproject.org/files/ENCFF087POO/@@download/ENCFF087POO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF515MTD bed narrowPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF314OGN, ENCFF482CQL, ENCFF539RTU, ENCFF705BZU 751299 ENCODE Processing Pipeline 815e7f7afd6eb281468d6174d8dda1d9 https://www.encodeproject.org/files/ENCFF515MTD/@@download/ENCFF515MTD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF458UYQ bed narrowPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF314OGN, ENCFF539RTU, ENCFF705BZU 829638 ENCODE Processing Pipeline 417a7175840eba6e3116313fc5990823 https://www.encodeproject.org/files/ENCFF458UYQ/@@download/ENCFF458UYQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF438RVE bigBed narrowPeak peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF970VMF 2814090 ENCODE Processing Pipeline e381e91056b05082e8c7ac949b2bea52 https://www.encodeproject.org/files/ENCFF438RVE/@@download/ENCFF438RVE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF233XOX bigWig signal p-value ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF314OGN, ENCFF482CQL, ENCFF705BZU 450068113 ENCODE Processing Pipeline 07c02bcf406eb595bfb2962e6a1d76f2 https://www.encodeproject.org/files/ENCFF233XOX/@@download/ENCFF233XOX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF862QGS bed narrowPeak replicated peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF458UYQ, ENCFF515MTD, ENCFF970VMF 423247 ENCODE Processing Pipeline 01229b51ced844fb879991ac9b979b6e https://www.encodeproject.org/files/ENCFF862QGS/@@download/ENCFF862QGS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF576XZZ bigWig fold change over control ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF314OGN, ENCFF482CQL, ENCFF539RTU, ENCFF705BZU 669314520 ENCODE Processing Pipeline 7d7534828a50d85433cad0b9c8871b37 https://www.encodeproject.org/files/ENCFF576XZZ/@@download/ENCFF576XZZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF370NJD bigBed narrowPeak replicated peaks ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF862QGS 1078657 ENCODE Processing Pipeline 9b7123ecb435ce1828b759be2abb59e1 https://www.encodeproject.org/files/ENCFF370NJD/@@download/ENCFF370NJD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF907OZT bigWig fold change over control ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF314OGN, ENCFF539RTU, ENCFF705BZU 363634184 ENCODE Processing Pipeline d1871da0640c6f9f8ae2917248a3d13e https://www.encodeproject.org/files/ENCFF907OZT/@@download/ENCFF907OZT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF985YJI bigWig fold change over control ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF314OGN, ENCFF482CQL, ENCFF705BZU 447537991 ENCODE Processing Pipeline 7c0c76ed3933ca50750e500eedb410e9 https://www.encodeproject.org/files/ENCFF985YJI/@@download/ENCFF985YJI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF872IKK fastq reads ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1928085745 Bing Ren, UCSD e204b51e29a532edcbbec43378bfb859 SRA:SRR3652645 https://www.encodeproject.org/files/ENCFF872IKK/@@download/ENCFF872IKK.fastq.gz Illumina HiSeq 4000 /files/ENCFF214HLL/, /files/ENCFF751HMJ/ released ENCFF390EUA fastq reads ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2481402913 Bing Ren, UCSD 3c48a34b5d53cdb6e28f00feb1ccd872 SRA:SRR3652646 https://www.encodeproject.org/files/ENCFF390EUA/@@download/ENCFF390EUA.fastq.gz Illumina HiSeq 4000 /files/ENCFF789POT/, /files/ENCFF884YRX/ released ENCFF085YPA bam alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF390EUA, ENCFF806TVZ 2506185520 ENCODE Processing Pipeline fdb374965bc206dc5f95d8656e48a395 https://www.encodeproject.org/files/ENCFF085YPA/@@download/ENCFF085YPA.bam mm10-minimal archived ENCFF384WIY bam alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF872IKK 2048579267 ENCODE Processing Pipeline eff1451c9027726cb95355b59775d851 https://www.encodeproject.org/files/ENCFF384WIY/@@download/ENCFF384WIY.bam mm10-minimal archived ENCFF946HKE bed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF384WIY, ENCFF405LXU 2297488 ENCODE Processing Pipeline 387dcecfc95a3a12772e246eeb9c7f42 https://www.encodeproject.org/files/ENCFF946HKE/@@download/ENCFF946HKE.bed.gz mm10-minimal archived ENCFF463FXQ bigBed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF282QHL 6474321 ENCODE Processing Pipeline 93bc0cf92420fe5d8f7cf6b724d2e22f https://www.encodeproject.org/files/ENCFF463FXQ/@@download/ENCFF463FXQ.bigBed mm10-minimal archived ENCFF282QHL bed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF085YPA, ENCFF405LXU, ENCFF980WPU 3014881 ENCODE Processing Pipeline 2eff90f0a6666bdd7be2be54aae7196c https://www.encodeproject.org/files/ENCFF282QHL/@@download/ENCFF282QHL.bed.gz mm10-minimal archived ENCFF830SLO bed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF085YPA, ENCFF384WIY, ENCFF405LXU, ENCFF980WPU 3059926 ENCODE Processing Pipeline 27b8ed3548f206f05124e4320803cb76 https://www.encodeproject.org/files/ENCFF830SLO/@@download/ENCFF830SLO.bed.gz mm10-minimal archived ENCFF639WBQ bigBed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF946HKE 5105746 ENCODE Processing Pipeline ca8576c65d5202d4c1916091d5214cdb https://www.encodeproject.org/files/ENCFF639WBQ/@@download/ENCFF639WBQ.bigBed mm10-minimal archived ENCFF999JFR bigWig signal p-value ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF085YPA, ENCFF405LXU, ENCFF980WPU 932652449 ENCODE Processing Pipeline 89f6cac51212323db02cc0cac87ab854 https://www.encodeproject.org/files/ENCFF999JFR/@@download/ENCFF999JFR.bigWig mm10-minimal archived ENCFF999RFC bigBed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF830SLO 8404501 ENCODE Processing Pipeline c392a855ac1cb0d4a972ab0625b40afd https://www.encodeproject.org/files/ENCFF999RFC/@@download/ENCFF999RFC.bigBed mm10-minimal archived ENCFF089XLG bigWig signal p-value ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF384WIY, ENCFF405LXU 868905829 ENCODE Processing Pipeline 4bec53141bf38666379d13e577ff7532 https://www.encodeproject.org/files/ENCFF089XLG/@@download/ENCFF089XLG.bigWig mm10-minimal archived ENCFF622ZER bigWig signal p-value ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF085YPA, ENCFF384WIY, ENCFF405LXU, ENCFF980WPU 1690622648 ENCODE Processing Pipeline 0ea5508b9f061419e3d14a6d1913ede2 https://www.encodeproject.org/files/ENCFF622ZER/@@download/ENCFF622ZER.bigWig mm10-minimal archived ENCFF787EWS bigWig fold change over control ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF384WIY, ENCFF405LXU 883051268 ENCODE Processing Pipeline 7e46faa21b2ce26d0732a10991fec81a https://www.encodeproject.org/files/ENCFF787EWS/@@download/ENCFF787EWS.bigWig mm10-minimal archived ENCFF020JGU bigWig fold change over control ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF085YPA, ENCFF405LXU, ENCFF980WPU 1254774178 ENCODE Processing Pipeline aa304fbc6d99c0444281f53e40672cfe https://www.encodeproject.org/files/ENCFF020JGU/@@download/ENCFF020JGU.bigWig mm10-minimal archived ENCFF802EYF bigWig fold change over control ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF085YPA, ENCFF384WIY, ENCFF405LXU, ENCFF980WPU 1702316412 ENCODE Processing Pipeline b6d5f319871eac47157cf307e4328813 https://www.encodeproject.org/files/ENCFF802EYF/@@download/ENCFF802EYF.bigWig mm10-minimal archived ENCFF234EIP bigBed narrowPeak replicated peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF310BYI 4963447 ENCODE Processing Pipeline 7f93ed2a24cf0534fdd030fba462a5d8 https://www.encodeproject.org/files/ENCFF234EIP/@@download/ENCFF234EIP.bigBed mm10-minimal archived ENCFF310BYI bed narrowPeak replicated peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF282QHL, ENCFF830SLO, ENCFF946HKE 2266611 ENCODE Processing Pipeline 1b32f0f4ae4586ebdb042580cbc067c0 https://www.encodeproject.org/files/ENCFF310BYI/@@download/ENCFF310BYI.bed.gz mm10-minimal archived ENCFF068UWY bam unfiltered alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF872IKK 2610895379 ENCODE Processing Pipeline cac3be6c557cd7c06349744df791e23a https://www.encodeproject.org/files/ENCFF068UWY/@@download/ENCFF068UWY.bam mm10 released ENCFF450RJE bam unfiltered alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF390EUA 3280575814 ENCODE Processing Pipeline 25af1fe8a335e4f2bb31ba85b200aa2f https://www.encodeproject.org/files/ENCFF450RJE/@@download/ENCFF450RJE.bam mm10 released ENCFF600JWW bam alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF872IKK 2048182917 ENCODE Processing Pipeline ec4a0312164425e712e0eea1f41c7698 https://www.encodeproject.org/files/ENCFF600JWW/@@download/ENCFF600JWW.bam mm10 released ENCFF740UXX bam alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF390EUA 2505717601 ENCODE Processing Pipeline b30aba7caf8481ee109e5cca64d76c38 https://www.encodeproject.org/files/ENCFF740UXX/@@download/ENCFF740UXX.bam mm10 released ENCFF053CVB bed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF600JWW 2297158 ENCODE Processing Pipeline 31ea3260833f54f3e53d68c623893944 https://www.encodeproject.org/files/ENCFF053CVB/@@download/ENCFF053CVB.bed.gz mm10 released ENCFF303LMO bed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF399MAG, ENCFF609XDL, ENCFF740UXX 2824416 ENCODE Processing Pipeline 5989b3d2f1504d43a08f1b51144ed504 https://www.encodeproject.org/files/ENCFF303LMO/@@download/ENCFF303LMO.bed.gz mm10 released ENCFF662XVO bed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF600JWW, ENCFF609XDL, ENCFF740UXX 3082018 ENCODE Processing Pipeline f903c040a9b57c9a58e21270a1bee49e https://www.encodeproject.org/files/ENCFF662XVO/@@download/ENCFF662XVO.bed.gz mm10 released ENCFF830ZWT bigBed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF053CVB 5104861 ENCODE Processing Pipeline e85170d6d79ee8b02d4d0aca5ab4a38b https://www.encodeproject.org/files/ENCFF830ZWT/@@download/ENCFF830ZWT.bigBed mm10 released ENCFF383FLA bigBed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF303LMO 7801138 ENCODE Processing Pipeline 208edcdcde02c235b2cded9d969802e4 https://www.encodeproject.org/files/ENCFF383FLA/@@download/ENCFF383FLA.bigBed mm10 released ENCFF630BBY bigBed narrowPeak peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF662XVO 8415175 ENCODE Processing Pipeline 503fc425fc24ae5c0221d4071e25a478 https://www.encodeproject.org/files/ENCFF630BBY/@@download/ENCFF630BBY.bigBed mm10 released ENCFF933GEM bigWig signal p-value ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF600JWW 632079845 ENCODE Processing Pipeline f4723c8631d1565779dc9396052e2a63 https://www.encodeproject.org/files/ENCFF933GEM/@@download/ENCFF933GEM.bigWig mm10 released ENCFF490MRN bigWig signal p-value ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF399MAG, ENCFF609XDL, ENCFF740UXX 1188845084 ENCODE Processing Pipeline a136eac027613e9d41586747f540e6ce https://www.encodeproject.org/files/ENCFF490MRN/@@download/ENCFF490MRN.bigWig mm10 released ENCFF157NXT bigWig signal p-value ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF600JWW, ENCFF609XDL, ENCFF740UXX 1637910322 ENCODE Processing Pipeline 64389800854b606a0cd8b45314efdbf5 https://www.encodeproject.org/files/ENCFF157NXT/@@download/ENCFF157NXT.bigWig mm10 released ENCFF691CKO bigWig fold change over control ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF399MAG, ENCFF600JWW 883146067 ENCODE Processing Pipeline 081c18a8812e076ad013bfff99d7558a https://www.encodeproject.org/files/ENCFF691CKO/@@download/ENCFF691CKO.bigWig mm10 released ENCFF124KRP bigWig fold change over control ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF399MAG, ENCFF609XDL, ENCFF740UXX 1242147024 ENCODE Processing Pipeline dd346a729f9a63cb420943818d6ae00f https://www.encodeproject.org/files/ENCFF124KRP/@@download/ENCFF124KRP.bigWig mm10 released ENCFF140IVD bigWig fold change over control ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF399MAG, ENCFF600JWW, ENCFF609XDL, ENCFF740UXX 1649324628 ENCODE Processing Pipeline ea3c74b4fa0b3c659f5b47ec28785718 https://www.encodeproject.org/files/ENCFF140IVD/@@download/ENCFF140IVD.bigWig mm10 released ENCFF457JYV bed narrowPeak replicated peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF053CVB, ENCFF303LMO, ENCFF662XVO 2244944 ENCODE Processing Pipeline 8a564b5cad159bcf5094a828881167db https://www.encodeproject.org/files/ENCFF457JYV/@@download/ENCFF457JYV.bed.gz mm10 released ENCFF098VOS bigBed narrowPeak replicated peaks ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF457JYV 4904303 ENCODE Processing Pipeline fe333ed93e200d43329681b86fe7ed75 https://www.encodeproject.org/files/ENCFF098VOS/@@download/ENCFF098VOS.bigBed mm10 released ENCFF001MOQ bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MOR 783346362 Ross Hardison, PennState 431d25bc470bee23b740fab6c7c5257a https://www.encodeproject.org/files/ENCFF001MOQ/@@download/ENCFF001MOQ.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOR fastq reads ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 36 single-ended 606336259 Ross Hardison, PennState 774c94cba75902ce6e32027f4a736dcf https://www.encodeproject.org/files/ENCFF001MOR/@@download/ENCFF001MOR.fastq.gz Illumina Genome Analyzer IIx released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOS bigWig signal ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1192810044 Ross Hardison, PennState 56355774e5520eacfb730acfa100445e https://www.encodeproject.org/files/ENCFF001MOS/@@download/ENCFF001MOS.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MOT bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MPG 7565161482 Ross Hardison, PennState 5afc0b6ac724f7d6bcc2bc7480bc9634 https://www.encodeproject.org/files/ENCFF001MOT/@@download/ENCFF001MOT.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOU bigWig signal ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 6046445928 Ross Hardison, PennState dfdcb2450a49535e7c6df018b3d85dd6 https://www.encodeproject.org/files/ENCFF001MOU/@@download/ENCFF001MOU.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MOV bigWig signal ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 6224028434 Ross Hardison, PennState e3f604047f4fec7ceed6f865235a7610 https://www.encodeproject.org/files/ENCFF001MOV/@@download/ENCFF001MOV.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MPG fastq reads ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 6446746079 Ross Hardison, PennState 688d0a30fffd60d319b2c4e8e21d1035 https://www.encodeproject.org/files/ENCFF001MPG/@@download/ENCFF001MPG.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF440APF bam unfiltered alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MPG, ENCFF806TVZ 7786305193 J. Michael Cherry, Stanford 0cef76b962275732f687a070eb032d4d https://www.encodeproject.org/files/ENCFF440APF/@@download/ENCFF440APF.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF671ICO bam unfiltered alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MOR, ENCFF806TVZ 822511500 J. Michael Cherry, Stanford ea79d6872a0ee9ab380fd48cd7fcab01 https://www.encodeproject.org/files/ENCFF671ICO/@@download/ENCFF671ICO.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF246RUC bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MPG, ENCFF806TVZ 5848587254 J. Michael Cherry, Stanford f1332e38176891e1b1ca4eacb0480096 https://www.encodeproject.org/files/ENCFF246RUC/@@download/ENCFF246RUC.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF186AGW bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MOR, ENCFF806TVZ 572272870 J. Michael Cherry, Stanford f6de37c1a007c88ce9aaafd47a744398 https://www.encodeproject.org/files/ENCFF186AGW/@@download/ENCFF186AGW.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF089UFL bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MOR, ENCFF018NEO 572045016 ENCODE Processing Pipeline a338da54c9c8b2798ddce2a3f502e20d https://www.encodeproject.org/files/ENCFF089UFL/@@download/ENCFF089UFL.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF615NPF bam unfiltered alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MOR, ENCFF018NEO 823528327 ENCODE Processing Pipeline 816ba45726ad27a3526cd5b3a71e1ae4 https://www.encodeproject.org/files/ENCFF615NPF/@@download/ENCFF615NPF.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF290JQR bam unfiltered alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MPG, ENCFF018NEO 6189060571 ENCODE Processing Pipeline 7efc7c15f79c84cfcacab1ae089b4733 https://www.encodeproject.org/files/ENCFF290JQR/@@download/ENCFF290JQR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF984QUA bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MPG, ENCFF018NEO 4424898092 ENCODE Processing Pipeline 5b45eca8de4e6302e8e599271e630f45 https://www.encodeproject.org/files/ENCFF984QUA/@@download/ENCFF984QUA.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF002AJR fastq reads ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1598792729 Bing Ren, UCSD 50b4ab22a3e0b491c2105b96aee87734 SRA:SRR3652293 https://www.encodeproject.org/files/ENCFF002AJR/@@download/ENCFF002AJR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQG/ released low read length, antibody characterized with exemption, inconsistent control read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF207EAR bam alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJR, ENCFF806TVZ 1414102592 ENCODE Processing Pipeline f0872636b2de9dae84e04d3fafc24f6a https://www.encodeproject.org/files/ENCFF207EAR/@@download/ENCFF207EAR.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF897XJF fastq reads ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1853646651 Bing Ren, UCSD 41453bb24e20ab1eb16d86f56bbd23e2 SRA:SRR3652292 https://www.encodeproject.org/files/ENCFF897XJF/@@download/ENCFF897XJF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQF/ released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF560SVU bam alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806TVZ, ENCFF897XJF 1820324961 ENCODE Processing Pipeline 4a836954eb55cd479d45b93b712fd230 https://www.encodeproject.org/files/ENCFF560SVU/@@download/ENCFF560SVU.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF921RSR bed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF560SVU, ENCFF868CEP 1500530 ENCODE Processing Pipeline 598feb92beb7af635cfc21a202965a5d https://www.encodeproject.org/files/ENCFF921RSR/@@download/ENCFF921RSR.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF658RQO bigBed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF415FEU 5371723 ENCODE Processing Pipeline 17ff22b4268f5159dc81f5af3610e24c https://www.encodeproject.org/files/ENCFF658RQO/@@download/ENCFF658RQO.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF859BQV bigWig signal p-value ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF207EAR, ENCFF462HQE, ENCFF868CEP 651497112 ENCODE Processing Pipeline 36993da3d04236cf3509e99881215a09 https://www.encodeproject.org/files/ENCFF859BQV/@@download/ENCFF859BQV.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF638EME bigWig signal p-value ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF560SVU, ENCFF868CEP 466254229 ENCODE Processing Pipeline e14e8479dab70b0546a381ddc3996b0b https://www.encodeproject.org/files/ENCFF638EME/@@download/ENCFF638EME.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF219HOP bigWig signal p-value ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF207EAR, ENCFF462HQE, ENCFF560SVU, ENCFF868CEP 839111076 ENCODE Processing Pipeline 5e62f91fea976bc0e4fe1259c4caf707 https://www.encodeproject.org/files/ENCFF219HOP/@@download/ENCFF219HOP.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF145AQH bigBed narrowPeak replicated peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF049GBX 3610644 ENCODE Processing Pipeline e07b20aeca1229d5a48ba5a01b33260d https://www.encodeproject.org/files/ENCFF145AQH/@@download/ENCFF145AQH.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF296LHL bigBed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF312BQJ 5820056 ENCODE Processing Pipeline 929f018371086a14e4f300b31069a67a https://www.encodeproject.org/files/ENCFF296LHL/@@download/ENCFF296LHL.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF110HQL bigBed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF921RSR 3355836 ENCODE Processing Pipeline ee1c5573865e7ffe52a6ab1b9179d45a https://www.encodeproject.org/files/ENCFF110HQL/@@download/ENCFF110HQL.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF415FEU bed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF207EAR, ENCFF462HQE, ENCFF560SVU, ENCFF868CEP 2572171 ENCODE Processing Pipeline 8b2a49e0e8cd802c4eae125f35fb98b3 https://www.encodeproject.org/files/ENCFF415FEU/@@download/ENCFF415FEU.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF721EGI bigWig fold change over control ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF207EAR, ENCFF462HQE, ENCFF868CEP 646961988 ENCODE Processing Pipeline 8246f78cff46abf651f2d4e951bebd52 https://www.encodeproject.org/files/ENCFF721EGI/@@download/ENCFF721EGI.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF075KZL bigWig fold change over control ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF207EAR, ENCFF462HQE, ENCFF560SVU, ENCFF868CEP 1020703879 ENCODE Processing Pipeline 8b17dd2dfa184cf983d8950fc46eb8d6 https://www.encodeproject.org/files/ENCFF075KZL/@@download/ENCFF075KZL.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF312BQJ bed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF207EAR, ENCFF462HQE, ENCFF868CEP 2787986 ENCODE Processing Pipeline d7e6b17c7cc844d1755ab204429db6d8 https://www.encodeproject.org/files/ENCFF312BQJ/@@download/ENCFF312BQJ.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF698AWB bigWig fold change over control ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF560SVU, ENCFF868CEP 563869618 ENCODE Processing Pipeline 2dde4721c79293f946c864900b350afe https://www.encodeproject.org/files/ENCFF698AWB/@@download/ENCFF698AWB.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF049GBX bed narrowPeak replicated peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF312BQJ, ENCFF415FEU, ENCFF921RSR 2015004 ENCODE Processing Pipeline c828a49a930b061c720b5aa27f302c5c https://www.encodeproject.org/files/ENCFF049GBX/@@download/ENCFF049GBX.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF949VBD bam unfiltered alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJR, ENCFF018NEO 1837013839 ENCODE Processing Pipeline 8785b925ef96fa718d4fda13c8e6e5c3 https://www.encodeproject.org/files/ENCFF949VBD/@@download/ENCFF949VBD.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF327UUW bam unfiltered alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF897XJF 1867652594 ENCODE Processing Pipeline 47a7bc25bdf621d4e36be0400898d437 https://www.encodeproject.org/files/ENCFF327UUW/@@download/ENCFF327UUW.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF946FSF bam alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJR, ENCFF018NEO 1413838246 ENCODE Processing Pipeline 00eef33b439326fc0c0d81c07c9fc408 https://www.encodeproject.org/files/ENCFF946FSF/@@download/ENCFF946FSF.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF851KQD bam alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF897XJF 1420809992 ENCODE Processing Pipeline 93f719899f0616a4e9611d9bb49b4d88 https://www.encodeproject.org/files/ENCFF851KQD/@@download/ENCFF851KQD.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF162KZJ bed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF383CGK, ENCFF598OHC, ENCFF946FSF 2606927 ENCODE Processing Pipeline d41983771ef860bc0b63960b39269b4f https://www.encodeproject.org/files/ENCFF162KZJ/@@download/ENCFF162KZJ.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF296JLD bed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF383CGK, ENCFF851KQD 1629005 ENCODE Processing Pipeline 3b0a902567494a7af1fe67e26cd40050 https://www.encodeproject.org/files/ENCFF296JLD/@@download/ENCFF296JLD.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF218ZJB bed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF383CGK, ENCFF598OHC, ENCFF851KQD, ENCFF946FSF 2348199 ENCODE Processing Pipeline 54f73028bdb49fc852b2ca76e61cb37e https://www.encodeproject.org/files/ENCFF218ZJB/@@download/ENCFF218ZJB.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF921SOH bigBed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF162KZJ 5664468 ENCODE Processing Pipeline 882184f009e9ade20d030f0d9e72f0fa https://www.encodeproject.org/files/ENCFF921SOH/@@download/ENCFF921SOH.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF176DQD bigBed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF296JLD 3646090 ENCODE Processing Pipeline 10eb010c46293567304a5464ecac1d9c https://www.encodeproject.org/files/ENCFF176DQD/@@download/ENCFF176DQD.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF119FTN bigBed narrowPeak peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF218ZJB 6486692 ENCODE Processing Pipeline 8764ac5bfc0429929947f48aa57b2583 https://www.encodeproject.org/files/ENCFF119FTN/@@download/ENCFF119FTN.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF003ILY bigWig signal p-value ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF383CGK, ENCFF598OHC, ENCFF946FSF 616317757 ENCODE Processing Pipeline f74c655a4a5cd6128cdca0f3fa53ab40 https://www.encodeproject.org/files/ENCFF003ILY/@@download/ENCFF003ILY.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF303HJA bigWig signal p-value ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF383CGK, ENCFF851KQD 433180615 ENCODE Processing Pipeline a5f8938b70e840148277e9204c84757a https://www.encodeproject.org/files/ENCFF303HJA/@@download/ENCFF303HJA.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF109PRC bigWig signal p-value ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF383CGK, ENCFF598OHC, ENCFF851KQD, ENCFF946FSF 901250494 ENCODE Processing Pipeline b8302ba5ec42730f15c6859fffbeb33e https://www.encodeproject.org/files/ENCFF109PRC/@@download/ENCFF109PRC.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF281CNT bigWig fold change over control ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF383CGK, ENCFF598OHC, ENCFF946FSF 720973588 ENCODE Processing Pipeline 61627202dca0793c798b9684cafb237f https://www.encodeproject.org/files/ENCFF281CNT/@@download/ENCFF281CNT.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF147THY bigWig fold change over control ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF383CGK, ENCFF851KQD 524792252 ENCODE Processing Pipeline 30296aaf0e40784079d48bc7346f34f6 https://www.encodeproject.org/files/ENCFF147THY/@@download/ENCFF147THY.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF606BGM bigWig fold change over control ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF383CGK, ENCFF598OHC, ENCFF851KQD, ENCFF946FSF 1093606960 ENCODE Processing Pipeline 0bf73f000d7281cd552ef737eb2bbc77 https://www.encodeproject.org/files/ENCFF606BGM/@@download/ENCFF606BGM.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF094WSH bed narrowPeak replicated peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF162KZJ, ENCFF218ZJB, ENCFF296JLD 1970052 ENCODE Processing Pipeline ae77e6e2a53cd7f26b360c6f3a42285f https://www.encodeproject.org/files/ENCFF094WSH/@@download/ENCFF094WSH.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF304AJZ bigBed narrowPeak replicated peaks ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF094WSH 3559120 ENCODE Processing Pipeline 3bacfda527527a1eb62dd12f0b6acd20 https://www.encodeproject.org/files/ENCFF304AJZ/@@download/ENCFF304AJZ.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF982BEQ fastq reads ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2210906340 Bing Ren, UCSD c0ba32657f3ba36ca9a8bb704e093c41 SRA:SRR4235707 https://www.encodeproject.org/files/ENCFF982BEQ/@@download/ENCFF982BEQ.fastq.gz Illumina HiSeq 4000 released ENCFF024PVD fastq reads ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2479801467 Bing Ren, UCSD 0fdfcf3bc5ee286a70ee0b065cf021e5 SRA:SRR4235708 https://www.encodeproject.org/files/ENCFF024PVD/@@download/ENCFF024PVD.fastq.gz Illumina HiSeq 4000 released ENCFF825AVI bam unfiltered alignments ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF982BEQ 3126304251 ENCODE Processing Pipeline a1cb7b2fe86d0ff33a21948f1c1bafc0 https://www.encodeproject.org/files/ENCFF825AVI/@@download/ENCFF825AVI.bam mm10 released ENCFF157KEH bam unfiltered alignments ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF024PVD 3386961149 ENCODE Processing Pipeline a81dbb784fe98f80aa716d960fdd24f7 https://www.encodeproject.org/files/ENCFF157KEH/@@download/ENCFF157KEH.bam mm10 released ENCFF869IME bam alignments ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF982BEQ 2323237661 ENCODE Processing Pipeline cee6e51c17508f35ffe4cf11d809a78f https://www.encodeproject.org/files/ENCFF869IME/@@download/ENCFF869IME.bam mm10 released ENCFF940GMW bam alignments ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF024PVD 2517619102 ENCODE Processing Pipeline 183905534fe3b69b2d32715168a9d5bc https://www.encodeproject.org/files/ENCFF940GMW/@@download/ENCFF940GMW.bam mm10 released ENCFF828JAB fastq reads ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2158853506 Bing Ren, UCSD 3d12807b72c857f000d657fe12fa1b34 SRA:SRR3652963 https://www.encodeproject.org/files/ENCFF828JAB/@@download/ENCFF828JAB.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released ENCFF883OFN fastq reads ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2002241094 Bing Ren, UCSD 750b6ee03379a92e1bae538f0777ef25 SRA:SRR3652964 https://www.encodeproject.org/files/ENCFF883OFN/@@download/ENCFF883OFN.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/, /files/ENCFF961WKK/ released ENCFF402LOE bam alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF806TVZ, ENCFF883OFN 2147100059 ENCODE Processing Pipeline eb37cc956dbd1d14aa5b5c02595a54e9 https://www.encodeproject.org/files/ENCFF402LOE/@@download/ENCFF402LOE.bam mm10-minimal archived ENCFF311IXA bam alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF828JAB 2295454047 ENCODE Processing Pipeline 39baf30f1fe83fae648585dcb71768b9 https://www.encodeproject.org/files/ENCFF311IXA/@@download/ENCFF311IXA.bam mm10-minimal archived ENCFF669AWS bed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF402LOE 3096113 ENCODE Processing Pipeline 6e9810ce5e5d10fe7f8b5d7a3e6221d5 https://www.encodeproject.org/files/ENCFF669AWS/@@download/ENCFF669AWS.bed.gz mm10-minimal archived ENCFF915QPQ bed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF311IXA 3512914 ENCODE Processing Pipeline 4aa0c597881227aac273f5ca2b992c06 https://www.encodeproject.org/files/ENCFF915QPQ/@@download/ENCFF915QPQ.bed.gz mm10-minimal archived ENCFF725DHY bed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF311IXA, ENCFF402LOE 3650285 ENCODE Processing Pipeline e7ebccbc06054d1baa62899a31f8c32c https://www.encodeproject.org/files/ENCFF725DHY/@@download/ENCFF725DHY.bed.gz mm10-minimal archived ENCFF962GTL bigWig signal p-value ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF402LOE 705591980 ENCODE Processing Pipeline d1d70d11d0d0dcdbcb83ad32fa63e71e https://www.encodeproject.org/files/ENCFF962GTL/@@download/ENCFF962GTL.bigWig mm10-minimal archived ENCFF834ZCN bigBed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF725DHY 9562408 ENCODE Processing Pipeline 59c05b394830a6418f18a2d0b626c426 https://www.encodeproject.org/files/ENCFF834ZCN/@@download/ENCFF834ZCN.bigBed mm10-minimal archived ENCFF941ZCM bigBed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF669AWS 6300021 ENCODE Processing Pipeline 5865b70e32e5d8c479d4d0ee9a4dbf5c https://www.encodeproject.org/files/ENCFF941ZCM/@@download/ENCFF941ZCM.bigBed mm10-minimal archived ENCFF701EKO bigBed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF915QPQ 9181564 ENCODE Processing Pipeline ba675b1bc5345a1086676e8aafdfa574 https://www.encodeproject.org/files/ENCFF701EKO/@@download/ENCFF701EKO.bigBed mm10-minimal archived ENCFF403DQN bigWig signal p-value ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF311IXA 983237775 ENCODE Processing Pipeline a217b852799e6e45c36a09af01fab88d https://www.encodeproject.org/files/ENCFF403DQN/@@download/ENCFF403DQN.bigWig mm10-minimal archived ENCFF884YSR bigWig signal p-value ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF311IXA, ENCFF402LOE 1575634502 ENCODE Processing Pipeline 36bd05cab26b3817cf132748e7b45c58 https://www.encodeproject.org/files/ENCFF884YSR/@@download/ENCFF884YSR.bigWig mm10-minimal archived ENCFF947WSG bigWig fold change over control ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF402LOE 852856716 ENCODE Processing Pipeline f6e602abfc62447a1f418fc2e9f31aa9 https://www.encodeproject.org/files/ENCFF947WSG/@@download/ENCFF947WSG.bigWig mm10-minimal archived ENCFF567BPR bigWig fold change over control ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF028OLU, ENCFF059DKF, ENCFF311IXA 1148376762 ENCODE Processing Pipeline f2d64c027c51fc92aba1a7e5b9e151ec https://www.encodeproject.org/files/ENCFF567BPR/@@download/ENCFF567BPR.bigWig mm10-minimal archived ENCFF452CPY bigWig fold change over control ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF311IXA, ENCFF402LOE 1600347512 ENCODE Processing Pipeline c5279921a51679863c6b053da9789436 https://www.encodeproject.org/files/ENCFF452CPY/@@download/ENCFF452CPY.bigWig mm10-minimal archived ENCFF192TRY bed narrowPeak replicated peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF669AWS, ENCFF725DHY, ENCFF915QPQ 3022857 ENCODE Processing Pipeline 3c61e2be53cd894dfe3100732a4c8772 https://www.encodeproject.org/files/ENCFF192TRY/@@download/ENCFF192TRY.bed.gz mm10-minimal archived ENCFF447KHB bigBed narrowPeak replicated peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF192TRY 6311498 ENCODE Processing Pipeline 40ff726c1689b6946ea972d27d90f49f https://www.encodeproject.org/files/ENCFF447KHB/@@download/ENCFF447KHB.bigBed mm10-minimal archived ENCFF530JXP bam unfiltered alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF828JAB 2863693934 ENCODE Processing Pipeline 2968c552c784e55e192e0e44fba7a26a https://www.encodeproject.org/files/ENCFF530JXP/@@download/ENCFF530JXP.bam mm10 released ENCFF448IKF bam unfiltered alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF883OFN 2690253219 ENCODE Processing Pipeline 9ed9273f7126ee931702768188868a85 https://www.encodeproject.org/files/ENCFF448IKF/@@download/ENCFF448IKF.bam mm10 released ENCFF434BNI bam alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF883OFN 2146686788 ENCODE Processing Pipeline 686051cd12db844b2eac1485ba603d30 https://www.encodeproject.org/files/ENCFF434BNI/@@download/ENCFF434BNI.bam mm10 released ENCFF827BYE bam alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF828JAB 2295074699 ENCODE Processing Pipeline 9780b451c4b5a58108baf659d7404c45 https://www.encodeproject.org/files/ENCFF827BYE/@@download/ENCFF827BYE.bam mm10 released ENCFF159FLA bed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF434BNI, ENCFF570IJH 3095810 ENCODE Processing Pipeline 56bf6db639411f4934b62fb02e72d762 https://www.encodeproject.org/files/ENCFF159FLA/@@download/ENCFF159FLA.bed.gz mm10 released ENCFF075KJL bed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF827BYE 3287012 ENCODE Processing Pipeline 7f1b434aa0b6073f9a3b3f94fdc8d0d7 https://www.encodeproject.org/files/ENCFF075KJL/@@download/ENCFF075KJL.bed.gz mm10 released ENCFF023FGN bed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF434BNI, ENCFF570IJH, ENCFF827BYE 3650787 ENCODE Processing Pipeline fd50f2c787e662fcbb1d6d45f6535976 https://www.encodeproject.org/files/ENCFF023FGN/@@download/ENCFF023FGN.bed.gz mm10 released ENCFF619GGF bigBed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF159FLA 6301645 ENCODE Processing Pipeline 81f64f7b86ec59030136b4616482e0ac https://www.encodeproject.org/files/ENCFF619GGF/@@download/ENCFF619GGF.bigBed mm10 released ENCFF592TOT bigBed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF075KJL 8614533 ENCODE Processing Pipeline 7cbf3ed61981d23a6bb260c2df31cfdd https://www.encodeproject.org/files/ENCFF592TOT/@@download/ENCFF592TOT.bigBed mm10 released ENCFF642WEL bigBed narrowPeak peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF023FGN 9564120 ENCODE Processing Pipeline b45b179a066ece4be48ec7c479da3db6 https://www.encodeproject.org/files/ENCFF642WEL/@@download/ENCFF642WEL.bigBed mm10 released ENCFF278VWF bigWig signal p-value ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF434BNI, ENCFF570IJH 826634934 ENCODE Processing Pipeline 02db7f725942c3410cad313c55f62036 https://www.encodeproject.org/files/ENCFF278VWF/@@download/ENCFF278VWF.bigWig mm10 released ENCFF059IGO bigWig signal p-value ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF827BYE 1079962606 ENCODE Processing Pipeline 33b00eb3b9c32d310860c2d80e6b3386 https://www.encodeproject.org/files/ENCFF059IGO/@@download/ENCFF059IGO.bigWig mm10 released ENCFF441MBC bigWig signal p-value ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF434BNI, ENCFF570IJH, ENCFF827BYE 1576591101 ENCODE Processing Pipeline 8fdaf2fbf41649f585a1e79436f4706e https://www.encodeproject.org/files/ENCFF441MBC/@@download/ENCFF441MBC.bigWig mm10 released ENCFF260UXV bigWig fold change over control ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF434BNI, ENCFF570IJH 850221260 ENCODE Processing Pipeline c12768d02e97a9191f8c6d68a4775ed3 https://www.encodeproject.org/files/ENCFF260UXV/@@download/ENCFF260UXV.bigWig mm10 released ENCFF932CSL bigWig fold change over control ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF387WDC, ENCFF570IJH, ENCFF827BYE 1073575107 ENCODE Processing Pipeline 16f13e6bef2cbef5bee9544d5783ac6d https://www.encodeproject.org/files/ENCFF932CSL/@@download/ENCFF932CSL.bigWig mm10 released ENCFF870LES bigWig fold change over control ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF387WDC, ENCFF434BNI, ENCFF570IJH, ENCFF827BYE 1599274587 ENCODE Processing Pipeline f785e53506a139d0f583204d51764038 https://www.encodeproject.org/files/ENCFF870LES/@@download/ENCFF870LES.bigWig mm10 released ENCFF035QDR bigBed narrowPeak replicated peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF527QRG 6212576 ENCODE Processing Pipeline d073a2b33301be9c09845c7e5a906f29 https://www.encodeproject.org/files/ENCFF035QDR/@@download/ENCFF035QDR.bigBed mm10 released ENCFF527QRG bed narrowPeak replicated peaks ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF023FGN, ENCFF075KJL, ENCFF159FLA 2974357 ENCODE Processing Pipeline a0c03b8c8f795804ac351384b7870fba https://www.encodeproject.org/files/ENCFF527QRG/@@download/ENCFF527QRG.bed.gz mm10 released ENCFF865IVF fastq reads ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1349008794 Bing Ren, UCSD 4879dd0db95dd77ad727f575f07e372e SRA:SRR4235651 https://www.encodeproject.org/files/ENCFF865IVF/@@download/ENCFF865IVF.fastq.gz Illumina HiSeq 4000 /files/ENCFF163AJI/ released mild to moderate bottlenecking, moderate library complexity ENCFF391YEY fastq reads ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1279472973 Bing Ren, UCSD 8b59e85fb96f7f2223e4b5fe7c278615 SRA:SRR4235650 https://www.encodeproject.org/files/ENCFF391YEY/@@download/ENCFF391YEY.fastq.gz Illumina HiSeq 4000 /files/ENCFF524CAC/ released mild to moderate bottlenecking, moderate library complexity ENCFF500EJE bam unfiltered alignments ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF391YEY 1611852945 ENCODE Processing Pipeline 2346621192cdd16e894d14efb20ebb5e https://www.encodeproject.org/files/ENCFF500EJE/@@download/ENCFF500EJE.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF427ONV bam unfiltered alignments ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF865IVF 1665002312 ENCODE Processing Pipeline 2fe68418e8cb7c15e88ab33c3f989c08 https://www.encodeproject.org/files/ENCFF427ONV/@@download/ENCFF427ONV.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF553IOV bam alignments ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF391YEY 1105861959 ENCODE Processing Pipeline 8badffd2d403bca11a21e067d4fdf87e https://www.encodeproject.org/files/ENCFF553IOV/@@download/ENCFF553IOV.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF512HMV bam alignments ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF865IVF 1157694759 ENCODE Processing Pipeline 7ee61e8dcf9764fddf5c80a8f2334f91 https://www.encodeproject.org/files/ENCFF512HMV/@@download/ENCFF512HMV.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF307MNJ bigWig signal p-value ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF553IOV 502744555 ENCODE Processing Pipeline f4436c6dcb4c668bfa8d8a484c23e450 https://www.encodeproject.org/files/ENCFF307MNJ/@@download/ENCFF307MNJ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF867BWG bigWig fold change over control ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF553IOV 492384005 ENCODE Processing Pipeline 349c13406d3b1e2b643b3a298826cfa3 https://www.encodeproject.org/files/ENCFF867BWG/@@download/ENCFF867BWG.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF232VGY bed narrowPeak peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF280XYK, ENCFF553IOV 706438 ENCODE Processing Pipeline 46e9855d0a991d48b738ef3a8d46dd88 https://www.encodeproject.org/files/ENCFF232VGY/@@download/ENCFF232VGY.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF707SMM bigBed narrowPeak peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF232VGY 2203097 ENCODE Processing Pipeline 6930d24f0942066ca792dbd0a24a9094 https://www.encodeproject.org/files/ENCFF707SMM/@@download/ENCFF707SMM.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF828UQP bigBed narrowPeak peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF289QEV 2278573 ENCODE Processing Pipeline 37b22c6b514e716660a78e758e16304b https://www.encodeproject.org/files/ENCFF828UQP/@@download/ENCFF828UQP.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF113JTM bigWig signal p-value ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF512HMV, ENCFF531DRS 511023938 ENCODE Processing Pipeline 5672be72132e9ece1b8c565b6d62e957 https://www.encodeproject.org/files/ENCFF113JTM/@@download/ENCFF113JTM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF044UAM bed narrowPeak replicated peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF232VGY, ENCFF289QEV, ENCFF641PXG 826460 ENCODE Processing Pipeline c40f59b5e01aafe5090d3847c147e167 https://www.encodeproject.org/files/ENCFF044UAM/@@download/ENCFF044UAM.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF777WUH bigBed narrowPeak replicated peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF044UAM 1885891 ENCODE Processing Pipeline 84f39bae2a8222e99301844135aaec19 https://www.encodeproject.org/files/ENCFF777WUH/@@download/ENCFF777WUH.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF289QEV bed narrowPeak peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF512HMV, ENCFF531DRS 727333 ENCODE Processing Pipeline fb414363a30643f064de36000b4c932e https://www.encodeproject.org/files/ENCFF289QEV/@@download/ENCFF289QEV.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF641PXG bed narrowPeak peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF512HMV, ENCFF531DRS, ENCFF553IOV 859262 ENCODE Processing Pipeline 767ca501bdc6e63428dae56525c5ceb3 https://www.encodeproject.org/files/ENCFF641PXG/@@download/ENCFF641PXG.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF080XDI bigBed narrowPeak peaks ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF641PXG 2520955 ENCODE Processing Pipeline 0367b427f81c412850b0c4a1428b38b0 https://www.encodeproject.org/files/ENCFF080XDI/@@download/ENCFF080XDI.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF894NKD bigWig signal p-value ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF512HMV, ENCFF531DRS, ENCFF553IOV 821770383 ENCODE Processing Pipeline 3d76ffa58f8b607a8b79a797f8558afd https://www.encodeproject.org/files/ENCFF894NKD/@@download/ENCFF894NKD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF748KIZ bigWig fold change over control ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF512HMV, ENCFF531DRS 517465423 ENCODE Processing Pipeline e93815845ffba01181227a57c9bbb096 https://www.encodeproject.org/files/ENCFF748KIZ/@@download/ENCFF748KIZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF563HQA bigWig fold change over control ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF280XYK, ENCFF512HMV, ENCFF531DRS, ENCFF553IOV 988984446 ENCODE Processing Pipeline 34e0155cbdf687f68d2f618dc790bea6 https://www.encodeproject.org/files/ENCFF563HQA/@@download/ENCFF563HQA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF001ZSA fastq reads ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1012397316 Bing Ren, UCSD 3c8ac5df57fbfa915aac30912d2458eb SRA:SRR3652063 https://www.encodeproject.org/files/ENCFF001ZSA/@@download/ENCFF001ZSA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZSB fastq reads ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1035535136 Bing Ren, UCSD 5c9f9da1c2c061d39c3f95340348ce18 SRA:SRR3652065 https://www.encodeproject.org/files/ENCFF001ZSB/@@download/ENCFF001ZSB.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF660OMY fastq reads ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 252154828 Bing Ren, UCSD bf56c93208d9e34eff528874755b4613 SRA:SRR3652066 https://www.encodeproject.org/files/ENCFF660OMY/@@download/ENCFF660OMY.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF343VVQ fastq reads ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 205592281 Bing Ren, UCSD 5e85d7f52b3cdc5ca387b7079c835a67 SRA:SRR3652064 https://www.encodeproject.org/files/ENCFF343VVQ/@@download/ENCFF343VVQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF966YAQ bam alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSA, ENCFF343VVQ, ENCFF806TVZ 1146861652 ENCODE Processing Pipeline 5d0042e23a6e9833900ca5d223df28b1 https://www.encodeproject.org/files/ENCFF966YAQ/@@download/ENCFF966YAQ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF654AHY bam alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSB, ENCFF660OMY, ENCFF806TVZ 1206812864 ENCODE Processing Pipeline 43b90d34e81f32f88a6b6b55cb034e4a https://www.encodeproject.org/files/ENCFF654AHY/@@download/ENCFF654AHY.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF598YAM bed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF966YAQ 2046406 ENCODE Processing Pipeline df8fb0eb3e3111529638e8e194c90ec9 https://www.encodeproject.org/files/ENCFF598YAM/@@download/ENCFF598YAM.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF278XPJ bed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF654AHY, ENCFF807GND, ENCFF841RBB 2243250 ENCODE Processing Pipeline b5ba37132c5a82f0ee18d18a547b7086 https://www.encodeproject.org/files/ENCFF278XPJ/@@download/ENCFF278XPJ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF612WDG bed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF654AHY, ENCFF807GND, ENCFF841RBB, ENCFF966YAQ 1739169 ENCODE Processing Pipeline 22d606e8a06d5d389c7463ec886a1cc5 https://www.encodeproject.org/files/ENCFF612WDG/@@download/ENCFF612WDG.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF642TIP bigBed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF598YAM 4346089 ENCODE Processing Pipeline 4d16c62773d823baef523471fa6d80d1 https://www.encodeproject.org/files/ENCFF642TIP/@@download/ENCFF642TIP.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF173DTF bigBed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF278XPJ 5981194 ENCODE Processing Pipeline 34ea5ad5d5a3e3309136ea0fb56b59f3 https://www.encodeproject.org/files/ENCFF173DTF/@@download/ENCFF173DTF.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF807PGU bigBed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF612WDG 4678668 ENCODE Processing Pipeline 28a921a58cab29f43a360745d14ba614 https://www.encodeproject.org/files/ENCFF807PGU/@@download/ENCFF807PGU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF203SAG bigWig signal p-value ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF966YAQ 480495913 ENCODE Processing Pipeline 1eeb10ec5e80d9986bbccaaa90f8a5cb https://www.encodeproject.org/files/ENCFF203SAG/@@download/ENCFF203SAG.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF471DCZ bigWig signal p-value ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF654AHY, ENCFF807GND, ENCFF841RBB 478098537 ENCODE Processing Pipeline a91171e92941af790b04140a752f1e44 https://www.encodeproject.org/files/ENCFF471DCZ/@@download/ENCFF471DCZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF827ROF bigWig fold change over control ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF807GND, ENCFF841RBB, ENCFF966YAQ 472548195 ENCODE Processing Pipeline 2848fb5ad04e61cbd6adbf53bee5ab40 https://www.encodeproject.org/files/ENCFF827ROF/@@download/ENCFF827ROF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF203RDZ bigWig signal p-value ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF654AHY, ENCFF807GND, ENCFF841RBB, ENCFF966YAQ 537032555 ENCODE Processing Pipeline 3b8bc659858b1dc59e71a6c54fb6d80c https://www.encodeproject.org/files/ENCFF203RDZ/@@download/ENCFF203RDZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF406POX bed narrowPeak replicated peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF278XPJ, ENCFF598YAM, ENCFF612WDG 1737734 ENCODE Processing Pipeline 4f855a1a6036513ae593704464485d22 https://www.encodeproject.org/files/ENCFF406POX/@@download/ENCFF406POX.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF160UVU bigBed narrowPeak replicated peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF406POX 3777979 ENCODE Processing Pipeline 7486dc719830d08dee40b3feb01a5e5a https://www.encodeproject.org/files/ENCFF160UVU/@@download/ENCFF160UVU.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF235WLY bigWig fold change over control ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF654AHY, ENCFF807GND, ENCFF841RBB 465608813 ENCODE Processing Pipeline c45b82c1175acc9f8e19084b360679ac https://www.encodeproject.org/files/ENCFF235WLY/@@download/ENCFF235WLY.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF825UQE bigWig fold change over control ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF654AHY, ENCFF807GND, ENCFF841RBB, ENCFF966YAQ 761865963 ENCODE Processing Pipeline 9e3b00f823edadc1d20e0db0aed892c7 https://www.encodeproject.org/files/ENCFF825UQE/@@download/ENCFF825UQE.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF343FAV bam unfiltered alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSA, ENCFF018NEO, ENCFF343VVQ 1521669437 ENCODE Processing Pipeline 0d28495fbd1d8befa0514e7b8e19950b https://www.encodeproject.org/files/ENCFF343FAV/@@download/ENCFF343FAV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF739KNM bam unfiltered alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSB, ENCFF018NEO, ENCFF660OMY 1605602325 ENCODE Processing Pipeline 7fddb82b4289aad7a4a9a06c59191d4a https://www.encodeproject.org/files/ENCFF739KNM/@@download/ENCFF739KNM.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF833PQS bam alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSB, ENCFF018NEO, ENCFF660OMY 1138509439 ENCODE Processing Pipeline 101eeb5a4ec5f5a64317aaa8ea0028df https://www.encodeproject.org/files/ENCFF833PQS/@@download/ENCFF833PQS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF785NAQ bam alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSA, ENCFF018NEO, ENCFF343VVQ 1088841155 ENCODE Processing Pipeline 9671d745212b4998d0f2245fabd0980d https://www.encodeproject.org/files/ENCFF785NAQ/@@download/ENCFF785NAQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF065NUJ bed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF785NAQ, ENCFF804FRH 2030895 ENCODE Processing Pipeline fcf9fe7b755434d856a84ca08e518b27 https://www.encodeproject.org/files/ENCFF065NUJ/@@download/ENCFF065NUJ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF933VRG bed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804FRH, ENCFF833PQS 901051 ENCODE Processing Pipeline f4de310b3834e6405cc7108e9027008b https://www.encodeproject.org/files/ENCFF933VRG/@@download/ENCFF933VRG.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF480EBC bed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF785NAQ, ENCFF804FRH, ENCFF833PQS 1682557 ENCODE Processing Pipeline ec5774a2a787d26883540a2944130144 https://www.encodeproject.org/files/ENCFF480EBC/@@download/ENCFF480EBC.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF371KYX bigBed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF065NUJ 4318321 ENCODE Processing Pipeline f2f06276ee955babab88e5680e51df02 https://www.encodeproject.org/files/ENCFF371KYX/@@download/ENCFF371KYX.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF889DJD bigBed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF933VRG 2045578 ENCODE Processing Pipeline 2fbeedad376ec30a5baae344522d1df4 https://www.encodeproject.org/files/ENCFF889DJD/@@download/ENCFF889DJD.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF494NUO bigBed narrowPeak peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF480EBC 4525354 ENCODE Processing Pipeline 4df412c431a74f19c2becd5de43a74b3 https://www.encodeproject.org/files/ENCFF494NUO/@@download/ENCFF494NUO.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF475KSF bigWig signal p-value ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF785NAQ, ENCFF804FRH 447524477 ENCODE Processing Pipeline a45619362bbf94452391d2a7368696c7 https://www.encodeproject.org/files/ENCFF475KSF/@@download/ENCFF475KSF.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF927RHH bigWig signal p-value ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804FRH, ENCFF833PQS 268198534 ENCODE Processing Pipeline ecf7a15de162246758785b5dfbafa012 https://www.encodeproject.org/files/ENCFF927RHH/@@download/ENCFF927RHH.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF226OHW bigWig signal p-value ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF785NAQ, ENCFF804FRH, ENCFF833PQS 522742269 ENCODE Processing Pipeline 554147d9efae1ddadb8829ddc1df717a https://www.encodeproject.org/files/ENCFF226OHW/@@download/ENCFF226OHW.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF293EEZ bigWig fold change over control ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF785NAQ, ENCFF804FRH 472101275 ENCODE Processing Pipeline 8e31b7b30ff195e001190784d49089ef https://www.encodeproject.org/files/ENCFF293EEZ/@@download/ENCFF293EEZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF040WSU bigWig fold change over control ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804FRH, ENCFF833PQS 375987278 ENCODE Processing Pipeline ca117a0755cab3f722ba4904a6d76af8 https://www.encodeproject.org/files/ENCFF040WSU/@@download/ENCFF040WSU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF654PSV bigWig fold change over control ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF785NAQ, ENCFF804FRH, ENCFF833PQS 742240436 ENCODE Processing Pipeline 6149b84adcdc3fcea1ba9b9fcec827e1 https://www.encodeproject.org/files/ENCFF654PSV/@@download/ENCFF654PSV.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF263ADI bed narrowPeak replicated peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF065NUJ, ENCFF480EBC, ENCFF933VRG 1615365 ENCODE Processing Pipeline 337c9fac01a58260199c9f3c616b78e3 https://www.encodeproject.org/files/ENCFF263ADI/@@download/ENCFF263ADI.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF457HHU bigBed narrowPeak replicated peaks ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF263ADI 3593160 ENCODE Processing Pipeline 9b5af2736a81ea7855dc9cd2d306d7bb https://www.encodeproject.org/files/ENCFF457HHU/@@download/ENCFF457HHU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF155KRU fastq reads ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1594739727 Bing Ren, UCSD 29b685150891ec0cfcb16aeeb98745ef SRA:SRR4235825 https://www.encodeproject.org/files/ENCFF155KRU/@@download/ENCFF155KRU.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released mild to moderate bottlenecking ENCFF249TZR fastq reads ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2780700911 Bing Ren, UCSD 242568ea4ebc8ac0bdb937c160b4b0e1 SRA:SRR4235826 https://www.encodeproject.org/files/ENCFF249TZR/@@download/ENCFF249TZR.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released mild to moderate bottlenecking ENCFF471WBT bam unfiltered alignments ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF155KRU 2158711771 ENCODE Processing Pipeline 9afd153a98f99819de93774cdffd49b7 https://www.encodeproject.org/files/ENCFF471WBT/@@download/ENCFF471WBT.bam mm10 released mild to moderate bottlenecking ENCFF262ATK bam unfiltered alignments ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF249TZR 3483509750 ENCODE Processing Pipeline a92081183aa9712c59350cd59496920a https://www.encodeproject.org/files/ENCFF262ATK/@@download/ENCFF262ATK.bam mm10 released mild to moderate bottlenecking ENCFF067LVV bam alignments ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF155KRU 1665540118 ENCODE Processing Pipeline b403190cd72da6d457930620863a96c3 https://www.encodeproject.org/files/ENCFF067LVV/@@download/ENCFF067LVV.bam mm10 released mild to moderate bottlenecking ENCFF859YQX bam alignments ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF249TZR 2479329858 ENCODE Processing Pipeline 64eead1bfad14c518827b6623afc5aa7 https://www.encodeproject.org/files/ENCFF859YQX/@@download/ENCFF859YQX.bam mm10 released mild to moderate bottlenecking ENCFF692ZOC bigBed narrowPeak peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF462UZP 7424526 ENCODE Processing Pipeline bfe10dfce195be638b6906992648f2eb https://www.encodeproject.org/files/ENCFF692ZOC/@@download/ENCFF692ZOC.bigBed mm10 released mild to moderate bottlenecking ENCFF128KNG bed narrowPeak peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF298TEL, ENCFF528BOJ, ENCFF859YQX 2221737 ENCODE Processing Pipeline db3c1f804206fb028daa306ac56ebe1f https://www.encodeproject.org/files/ENCFF128KNG/@@download/ENCFF128KNG.bed.gz mm10 released mild to moderate bottlenecking ENCFF633XOG bed narrowPeak peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF067LVV, ENCFF298TEL 2146676 ENCODE Processing Pipeline 0f3d5ac5cd096fb701e9c5df956766cf https://www.encodeproject.org/files/ENCFF633XOG/@@download/ENCFF633XOG.bed.gz mm10 released mild to moderate bottlenecking ENCFF462UZP bed narrowPeak peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF067LVV, ENCFF298TEL, ENCFF528BOJ, ENCFF859YQX 2795395 ENCODE Processing Pipeline 76e30cf4d18f38a9bc1d554c9bb228c6 https://www.encodeproject.org/files/ENCFF462UZP/@@download/ENCFF462UZP.bed.gz mm10 released mild to moderate bottlenecking ENCFF693GGQ bigBed narrowPeak peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128KNG 6067306 ENCODE Processing Pipeline 090e91a96fc0d98319594ec74afbf94f https://www.encodeproject.org/files/ENCFF693GGQ/@@download/ENCFF693GGQ.bigBed mm10 released mild to moderate bottlenecking ENCFF677WYQ bigWig signal p-value ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF298TEL, ENCFF528BOJ, ENCFF859YQX 1023866161 ENCODE Processing Pipeline ceeb4a8beb9af0863969062b63c8d133 https://www.encodeproject.org/files/ENCFF677WYQ/@@download/ENCFF677WYQ.bigWig mm10 released mild to moderate bottlenecking ENCFF148TQD bigWig signal p-value ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF067LVV, ENCFF298TEL 540652732 ENCODE Processing Pipeline 811a7332e54ca186b0129af20dd2602b https://www.encodeproject.org/files/ENCFF148TQD/@@download/ENCFF148TQD.bigWig mm10 released mild to moderate bottlenecking ENCFF563OAM bigBed narrowPeak peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF633XOG 4695132 ENCODE Processing Pipeline 6d78b6fe2f31e44de8efa1015a0c270b https://www.encodeproject.org/files/ENCFF563OAM/@@download/ENCFF563OAM.bigBed mm10 released mild to moderate bottlenecking ENCFF404RRQ bigWig signal p-value ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF067LVV, ENCFF298TEL, ENCFF528BOJ, ENCFF859YQX 1509493959 ENCODE Processing Pipeline a164046a571154c36b4f5dd9a86dd1ce https://www.encodeproject.org/files/ENCFF404RRQ/@@download/ENCFF404RRQ.bigWig mm10 released mild to moderate bottlenecking ENCFF556RFT bigWig fold change over control ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF298TEL, ENCFF528BOJ, ENCFF859YQX 1134094266 ENCODE Processing Pipeline abd7de426306c37593f9ed6f2f5b67d2 https://www.encodeproject.org/files/ENCFF556RFT/@@download/ENCFF556RFT.bigWig mm10 released mild to moderate bottlenecking ENCFF576DXS bigWig fold change over control ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF067LVV, ENCFF298TEL 684064188 ENCODE Processing Pipeline db796ec71af1feedb500241fb3cf7b62 https://www.encodeproject.org/files/ENCFF576DXS/@@download/ENCFF576DXS.bigWig mm10 released mild to moderate bottlenecking ENCFF773NIS bigWig fold change over control ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF067LVV, ENCFF298TEL, ENCFF528BOJ, ENCFF859YQX 1488299255 ENCODE Processing Pipeline 9803a4340c47d8be062c381fa23c9a90 https://www.encodeproject.org/files/ENCFF773NIS/@@download/ENCFF773NIS.bigWig mm10 released mild to moderate bottlenecking ENCFF281MKX bed narrowPeak replicated peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128KNG, ENCFF462UZP, ENCFF633XOG 1930371 ENCODE Processing Pipeline 332fcbf2a46908080e09383a5e29d64e https://www.encodeproject.org/files/ENCFF281MKX/@@download/ENCFF281MKX.bed.gz mm10 released mild to moderate bottlenecking ENCFF325NNT bigBed narrowPeak replicated peaks ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF281MKX 4135222 ENCODE Processing Pipeline c7a345f1929e36da8e395a9f19b47053 https://www.encodeproject.org/files/ENCFF325NNT/@@download/ENCFF325NNT.bigBed mm10 released mild to moderate bottlenecking ENCFF898EWU fastq reads ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2770998259 Bing Ren, UCSD edde21981f713a39b0ecd6a4008607f4 SRA:SRR4235638 https://www.encodeproject.org/files/ENCFF898EWU/@@download/ENCFF898EWU.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released moderate library complexity, mild to moderate bottlenecking ENCFF403SQM fastq reads ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1090981930 Bing Ren, UCSD 8289506e394e0a06c31d26c3eb7c1d03 SRA:SRR4235639 https://www.encodeproject.org/files/ENCFF403SQM/@@download/ENCFF403SQM.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released moderate library complexity, mild to moderate bottlenecking ENCFF375UMD bam unfiltered alignments ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF403SQM 1325466431 ENCODE Processing Pipeline 4c1d82c8d1b756b20df736a9af72201d https://www.encodeproject.org/files/ENCFF375UMD/@@download/ENCFF375UMD.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF748DPU bam alignments ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF403SQM 980661108 ENCODE Processing Pipeline 6c52bb58efc891045537b72055b447f4 https://www.encodeproject.org/files/ENCFF748DPU/@@download/ENCFF748DPU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF058SLD bam unfiltered alignments ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF898EWU 3101945448 ENCODE Processing Pipeline 27c36aec3ca6bef41d0a2072674328ae https://www.encodeproject.org/files/ENCFF058SLD/@@download/ENCFF058SLD.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF163RNG bam alignments ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF898EWU 2004638578 ENCODE Processing Pipeline a3f2f7f1dd0ffc89cec26f295d33443e https://www.encodeproject.org/files/ENCFF163RNG/@@download/ENCFF163RNG.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF682VOR bed narrowPeak peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF163RNG, ENCFF778IFH 833473 ENCODE Processing Pipeline 93c81599ab85ebf87d5d2b23d8df841c https://www.encodeproject.org/files/ENCFF682VOR/@@download/ENCFF682VOR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF031BQA bigBed narrowPeak peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF923QMQ 1953339 ENCODE Processing Pipeline 9d4d7fcd9219a61fea1757b977a3c936 https://www.encodeproject.org/files/ENCFF031BQA/@@download/ENCFF031BQA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF566VGN bigWig fold change over control ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF163RNG, ENCFF778IFH 714596689 ENCODE Processing Pipeline 5aecf77299f0be5390a48b42581e83fb https://www.encodeproject.org/files/ENCFF566VGN/@@download/ENCFF566VGN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF202LQC bed narrowPeak peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF163RNG, ENCFF689YLF, ENCFF748DPU, ENCFF778IFH 852831 ENCODE Processing Pipeline 63c0a3dc434bb6b5b4221e5f91410975 https://www.encodeproject.org/files/ENCFF202LQC/@@download/ENCFF202LQC.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF862WAH bigBed narrowPeak peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF682VOR 2513618 ENCODE Processing Pipeline abdb7f52a6aa5343af15501245fe56e2 https://www.encodeproject.org/files/ENCFF862WAH/@@download/ENCFF862WAH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF149KHB bigWig fold change over control ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF163RNG, ENCFF689YLF, ENCFF748DPU, ENCFF778IFH 1070250743 ENCODE Processing Pipeline 511f1763f3942401b1bc0ac552217e35 https://www.encodeproject.org/files/ENCFF149KHB/@@download/ENCFF149KHB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF096NBM bigWig signal p-value ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF689YLF, ENCFF748DPU 556126777 ENCODE Processing Pipeline c671cf56e923e63ba4fb685ba9b82b8b https://www.encodeproject.org/files/ENCFF096NBM/@@download/ENCFF096NBM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF068QKC bigWig signal p-value ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF163RNG, ENCFF689YLF, ENCFF748DPU, ENCFF778IFH 1024686655 ENCODE Processing Pipeline b043b6353c4ec40ea05aebf8404866bd https://www.encodeproject.org/files/ENCFF068QKC/@@download/ENCFF068QKC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF923QMQ bed narrowPeak peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF689YLF, ENCFF748DPU 610588 ENCODE Processing Pipeline e2fc59ce75585e7912c4869ae4510d7d https://www.encodeproject.org/files/ENCFF923QMQ/@@download/ENCFF923QMQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF124XXD bigBed narrowPeak peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF202LQC 2514958 ENCODE Processing Pipeline 3592170f1f3a27d1b346e70123e01b05 https://www.encodeproject.org/files/ENCFF124XXD/@@download/ENCFF124XXD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF731IIH bigWig signal p-value ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF163RNG, ENCFF778IFH 575533901 ENCODE Processing Pipeline b9617be6260172bba2c5c77dbbdc4959 https://www.encodeproject.org/files/ENCFF731IIH/@@download/ENCFF731IIH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF128XBS bigWig fold change over control ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF689YLF, ENCFF748DPU 429137144 ENCODE Processing Pipeline 4899c18bd52e970a489f2185c2e9af88 https://www.encodeproject.org/files/ENCFF128XBS/@@download/ENCFF128XBS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF374XMI bigBed narrowPeak replicated peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF187RGN 1917405 ENCODE Processing Pipeline b438256c6197a8b81045a5ea94fd4a19 https://www.encodeproject.org/files/ENCFF374XMI/@@download/ENCFF374XMI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF187RGN bed narrowPeak replicated peaks ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF202LQC, ENCFF682VOR, ENCFF923QMQ 836518 ENCODE Processing Pipeline ad3d1f0b95d22c20c4cb29010f08eca9 https://www.encodeproject.org/files/ENCFF187RGN/@@download/ENCFF187RGN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF002AKY fastq reads ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1333234422 Bing Ren, UCSD db2f6c61519c3a7fd1be99ad73e9f8a0 SRA:SRR3652976 https://www.encodeproject.org/files/ENCFF002AKY/@@download/ENCFF002AKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF002AKZ fastq reads ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1325032973 Bing Ren, UCSD 84ec97a196052ac0edb1557d557a96d8 SRA:SRR3652977 https://www.encodeproject.org/files/ENCFF002AKZ/@@download/ENCFF002AKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQM/ released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF434QUO bam alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKZ, ENCFF806TVZ 911427974 ENCODE Processing Pipeline 0b71de359f32e12e9d3da117dfc91a0d https://www.encodeproject.org/files/ENCFF434QUO/@@download/ENCFF434QUO.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF085KIU bam alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKY, ENCFF806TVZ 1029053959 ENCODE Processing Pipeline 61def944c1a0afe52ce655a295f8b7e1 https://www.encodeproject.org/files/ENCFF085KIU/@@download/ENCFF085KIU.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF857UXD bed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF085KIU, ENCFF790TLG, ENCFF988JQL 798825 ENCODE Processing Pipeline 4d1972751958afc062c742e761df261a https://www.encodeproject.org/files/ENCFF857UXD/@@download/ENCFF857UXD.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF629LWA bigWig signal p-value ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF085KIU, ENCFF790TLG, ENCFF988JQL 444926586 ENCODE Processing Pipeline 05106b0875fed55d203f1d8197ccab37 https://www.encodeproject.org/files/ENCFF629LWA/@@download/ENCFF629LWA.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF232AHD bed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF085KIU, ENCFF434QUO, ENCFF790TLG, ENCFF988JQL 825003 ENCODE Processing Pipeline 348cb399bd71910740257d3ef687d80c https://www.encodeproject.org/files/ENCFF232AHD/@@download/ENCFF232AHD.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF686AGB bigBed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF857UXD 2521944 ENCODE Processing Pipeline 4bc2cd1079f5e953049ff5757e1b1cb0 https://www.encodeproject.org/files/ENCFF686AGB/@@download/ENCFF686AGB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF795DAD bigBed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF449MUI 2543286 ENCODE Processing Pipeline f5ef986f6f7499712c98ee0579f809e4 https://www.encodeproject.org/files/ENCFF795DAD/@@download/ENCFF795DAD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF116MVR bigBed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF232AHD 2581708 ENCODE Processing Pipeline 2e70b30b105808af18cfd6e3f3af7882 https://www.encodeproject.org/files/ENCFF116MVR/@@download/ENCFF116MVR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF449MUI bed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF434QUO, ENCFF790TLG, ENCFF988JQL 810329 ENCODE Processing Pipeline 1ea4501194be2c8f41ab6259703d5cd7 https://www.encodeproject.org/files/ENCFF449MUI/@@download/ENCFF449MUI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF472TUF bigWig signal p-value ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF434QUO, ENCFF790TLG, ENCFF988JQL 421845772 ENCODE Processing Pipeline 624e9864c3be1ad1bfdfa0e517762ed6 https://www.encodeproject.org/files/ENCFF472TUF/@@download/ENCFF472TUF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF828JQQ bigWig signal p-value ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF085KIU, ENCFF434QUO, ENCFF790TLG, ENCFF988JQL 694813485 ENCODE Processing Pipeline 7393881ae5b330e136b7255609916f4d https://www.encodeproject.org/files/ENCFF828JQQ/@@download/ENCFF828JQQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF129KFW bigWig fold change over control ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF085KIU, ENCFF790TLG, ENCFF988JQL 485169557 ENCODE Processing Pipeline 9a600f1327c8fe3cc566579b58eec0c9 https://www.encodeproject.org/files/ENCFF129KFW/@@download/ENCFF129KFW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF675ILA bigWig fold change over control ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF434QUO, ENCFF790TLG, ENCFF988JQL 421460389 ENCODE Processing Pipeline 2a22d5634f1389a02f4cc29f5a6cc786 https://www.encodeproject.org/files/ENCFF675ILA/@@download/ENCFF675ILA.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF963APC bed narrowPeak replicated peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF232AHD, ENCFF449MUI, ENCFF857UXD 966675 ENCODE Processing Pipeline b51c90e4186a08ae2ab5275524e87ab4 https://www.encodeproject.org/files/ENCFF963APC/@@download/ENCFF963APC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF898CWU bigWig fold change over control ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF085KIU, ENCFF434QUO, ENCFF790TLG, ENCFF988JQL 706751103 ENCODE Processing Pipeline 9844df9022a753fe5ba04daa574257a8 https://www.encodeproject.org/files/ENCFF898CWU/@@download/ENCFF898CWU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF798XRY bigBed narrowPeak replicated peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF963APC 2229207 ENCODE Processing Pipeline daa07d4efc9ff12df61253a545efad87 https://www.encodeproject.org/files/ENCFF798XRY/@@download/ENCFF798XRY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity ENCFF276BIM bam unfiltered alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKY, ENCFF018NEO 1427283914 ENCODE Processing Pipeline 4a59f6d28ee33369b9884bdebda3bc49 https://www.encodeproject.org/files/ENCFF276BIM/@@download/ENCFF276BIM.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF879ZSB bam unfiltered alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKZ, ENCFF018NEO 1377396786 ENCODE Processing Pipeline b4c88830bf10c7d6b4d95e26873346c4 https://www.encodeproject.org/files/ENCFF879ZSB/@@download/ENCFF879ZSB.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF287MUT bam alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKY, ENCFF018NEO 1028917302 ENCODE Processing Pipeline a8cf8d2bbeac13e178885cb4df70c408 https://www.encodeproject.org/files/ENCFF287MUT/@@download/ENCFF287MUT.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF556XTP bam alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKZ, ENCFF018NEO 911324041 ENCODE Processing Pipeline 51f7bfc70d4e0aa5b1144e3a52f6dc54 https://www.encodeproject.org/files/ENCFF556XTP/@@download/ENCFF556XTP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF676NUM bed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF287MUT, ENCFF568CQH, ENCFF621MOH 799301 ENCODE Processing Pipeline 7d2ba90a4ed823c4a2e7bb71f0e5a41d https://www.encodeproject.org/files/ENCFF676NUM/@@download/ENCFF676NUM.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF952TZM bed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF556XTP, ENCFF621MOH 748893 ENCODE Processing Pipeline 24a6010a5758ecb433128614b354173b https://www.encodeproject.org/files/ENCFF952TZM/@@download/ENCFF952TZM.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF803LJP bigBed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF676NUM 2523056 ENCODE Processing Pipeline 70e579f88cf1429196c617fdfc9d40f9 https://www.encodeproject.org/files/ENCFF803LJP/@@download/ENCFF803LJP.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF669HKF bed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF287MUT, ENCFF556XTP, ENCFF568CQH, ENCFF621MOH 816436 ENCODE Processing Pipeline 2c443f2b381fed10a74601e91bcd8e90 https://www.encodeproject.org/files/ENCFF669HKF/@@download/ENCFF669HKF.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF028DHL bigBed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF952TZM 2384369 ENCODE Processing Pipeline 44299c4c2c518a26aa2df8165a6570f6 https://www.encodeproject.org/files/ENCFF028DHL/@@download/ENCFF028DHL.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF283NPK bigBed narrowPeak peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF669HKF 2570633 ENCODE Processing Pipeline 616844ae0bfc7f36b96f4151c0f29e09 https://www.encodeproject.org/files/ENCFF283NPK/@@download/ENCFF283NPK.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF534RKE bigWig signal p-value ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF287MUT, ENCFF568CQH, ENCFF621MOH 561229187 ENCODE Processing Pipeline 14027111a8b3abe700ccbf3bbaee4e98 https://www.encodeproject.org/files/ENCFF534RKE/@@download/ENCFF534RKE.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF784XOS bigWig signal p-value ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF556XTP, ENCFF621MOH 371608300 ENCODE Processing Pipeline fd5d040a5643b420a0f7346159eb915e https://www.encodeproject.org/files/ENCFF784XOS/@@download/ENCFF784XOS.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF042NYB bigWig signal p-value ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF287MUT, ENCFF556XTP, ENCFF568CQH, ENCFF621MOH 694478881 ENCODE Processing Pipeline 823aedabdbbdd85c8859452d1f94218a https://www.encodeproject.org/files/ENCFF042NYB/@@download/ENCFF042NYB.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF572KLT bigWig fold change over control ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF287MUT, ENCFF568CQH, ENCFF621MOH 483557668 ENCODE Processing Pipeline 48fbd4d0b03d616c76598366dbbc945c https://www.encodeproject.org/files/ENCFF572KLT/@@download/ENCFF572KLT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF412RQA bigWig fold change over control ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF556XTP, ENCFF621MOH 340821196 ENCODE Processing Pipeline 10d924b5145143f6851bb7947d001ddf https://www.encodeproject.org/files/ENCFF412RQA/@@download/ENCFF412RQA.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF374BEH bigWig fold change over control ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF287MUT, ENCFF556XTP, ENCFF568CQH, ENCFF621MOH 709446291 ENCODE Processing Pipeline efdbc44f48858201c2c42def5c749fbf https://www.encodeproject.org/files/ENCFF374BEH/@@download/ENCFF374BEH.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF600HWQ bed narrowPeak replicated peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF669HKF, ENCFF676NUM, ENCFF952TZM 952685 ENCODE Processing Pipeline 5925e9a8ffb9f1be29bbad2f28308064 https://www.encodeproject.org/files/ENCFF600HWQ/@@download/ENCFF600HWQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF416LYH bigBed narrowPeak replicated peaks ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF600HWQ 2199770 ENCODE Processing Pipeline 430fcc50a9bd9af3a7b6d17bb8be9f12 https://www.encodeproject.org/files/ENCFF416LYH/@@download/ENCFF416LYH.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF547JPC fastq reads ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1473235308 Bing Ren, UCSD 154eecd83ed70b5fd25f96bff53c404a SRA:SRR3652905 https://www.encodeproject.org/files/ENCFF547JPC/@@download/ENCFF547JPC.fastq.gz Illumina HiSeq 4000 /files/ENCFF031RLD/, /files/ENCFF419PTI/ released moderate library complexity, mild to moderate bottlenecking ENCFF832PDF fastq reads ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1401747247 Bing Ren, UCSD b2c3bdb78799f21cdbf6d1c8611945d9 SRA:SRR3652906 https://www.encodeproject.org/files/ENCFF832PDF/@@download/ENCFF832PDF.fastq.gz Illumina HiSeq 4000 /files/ENCFF015ETA/, /files/ENCFF695ITS/ released moderate library complexity, mild to moderate bottlenecking ENCFF697FVT bam alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF806TVZ, ENCFF832PDF 1141306012 ENCODE Processing Pipeline c4214f4046395d7a6fb65570e3a0c63c https://www.encodeproject.org/files/ENCFF697FVT/@@download/ENCFF697FVT.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF414RYP bam alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF547JPC, ENCFF806TVZ 1245761800 ENCODE Processing Pipeline 87acc11c7bbcf26aedb07653a8d99efb https://www.encodeproject.org/files/ENCFF414RYP/@@download/ENCFF414RYP.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF168LLR bed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF414RYP, ENCFF595MDP, ENCFF697FVT 905247 ENCODE Processing Pipeline 303d9116611920b9efd0bc2bb8c3cbf9 https://www.encodeproject.org/files/ENCFF168LLR/@@download/ENCFF168LLR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF955XUM bigBed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF865ZIS 2616245 ENCODE Processing Pipeline 245a0557c2d28edfccc59cea76667c0b https://www.encodeproject.org/files/ENCFF955XUM/@@download/ENCFF955XUM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF235KOA bigBed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF168LLR 2766111 ENCODE Processing Pipeline 0e5736125dc8b8882816e3a8e7a5390a https://www.encodeproject.org/files/ENCFF235KOA/@@download/ENCFF235KOA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF179UDH bigWig signal p-value ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF414RYP, ENCFF595MDP 573194223 ENCODE Processing Pipeline be5bfc1055da2197abbcad066cbcdf03 https://www.encodeproject.org/files/ENCFF179UDH/@@download/ENCFF179UDH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF865ZIS bed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF697FVT 835638 ENCODE Processing Pipeline 3be012239a355a10e4e6560f78a8c63a https://www.encodeproject.org/files/ENCFF865ZIS/@@download/ENCFF865ZIS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF409EYH bigBed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF036NQZ 2515459 ENCODE Processing Pipeline 79ffaefd4dc5ae61aaab8b1568e1b8f2 https://www.encodeproject.org/files/ENCFF409EYH/@@download/ENCFF409EYH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF036NQZ bed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF414RYP, ENCFF595MDP 794593 ENCODE Processing Pipeline c0d34c1260130ed37c7cc3eb3e340f84 https://www.encodeproject.org/files/ENCFF036NQZ/@@download/ENCFF036NQZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF099CNY bigWig signal p-value ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF414RYP, ENCFF595MDP, ENCFF697FVT 924723207 ENCODE Processing Pipeline 2e8fdd3df4b49d5e1e20fb24ac73fa79 https://www.encodeproject.org/files/ENCFF099CNY/@@download/ENCFF099CNY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF468UZL bigWig signal p-value ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF697FVT 596083352 ENCODE Processing Pipeline 30360b047f346ee7f0215542de02db61 https://www.encodeproject.org/files/ENCFF468UZL/@@download/ENCFF468UZL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF908BNO bigWig fold change over control ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF414RYP, ENCFF595MDP 598950488 ENCODE Processing Pipeline 5414a87692adc40c3773d6b27043781e https://www.encodeproject.org/files/ENCFF908BNO/@@download/ENCFF908BNO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF806EZY bigWig fold change over control ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF233LRZ, ENCFF697FVT 561815206 ENCODE Processing Pipeline 22bd641963ad2a465f806b47252a5c05 https://www.encodeproject.org/files/ENCFF806EZY/@@download/ENCFF806EZY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF555VCQ bigWig fold change over control ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF233LRZ, ENCFF414RYP, ENCFF595MDP, ENCFF697FVT 1071330078 ENCODE Processing Pipeline fa61b19c4a6634013799195d6408ce45 https://www.encodeproject.org/files/ENCFF555VCQ/@@download/ENCFF555VCQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF143IIE bed narrowPeak replicated peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF036NQZ, ENCFF168LLR, ENCFF865ZIS 952233 ENCODE Processing Pipeline 38a70060d984e8d8a601c8c6377f4a9a https://www.encodeproject.org/files/ENCFF143IIE/@@download/ENCFF143IIE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF517FNM bigBed narrowPeak replicated peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF143IIE 2181245 ENCODE Processing Pipeline 96f3b45c856adcece347d3abdb6970d2 https://www.encodeproject.org/files/ENCFF517FNM/@@download/ENCFF517FNM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF904VAI bam unfiltered alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF547JPC 1823011484 ENCODE Processing Pipeline ed0337d0f3c4aabe7c506db2e841415a https://www.encodeproject.org/files/ENCFF904VAI/@@download/ENCFF904VAI.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF570KYD bam unfiltered alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF832PDF 1727558163 ENCODE Processing Pipeline 29509d6bfa2640263fe681bc271c2692 https://www.encodeproject.org/files/ENCFF570KYD/@@download/ENCFF570KYD.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF836XNP bam alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF547JPC 1245538569 ENCODE Processing Pipeline 0e29a82d3a17744d3fe09e62549cc976 https://www.encodeproject.org/files/ENCFF836XNP/@@download/ENCFF836XNP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF587YQL bam alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF832PDF 1141092708 ENCODE Processing Pipeline 70bbeb66b6a5f980723e77dcebb550c5 https://www.encodeproject.org/files/ENCFF587YQL/@@download/ENCFF587YQL.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF997HLR bed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF836XNP 856257 ENCODE Processing Pipeline f0557e525d4b6409891bb3e2b90df923 https://www.encodeproject.org/files/ENCFF997HLR/@@download/ENCFF997HLR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF976HVZ bed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF587YQL, ENCFF781DUP 835749 ENCODE Processing Pipeline 830f803cba9c05916fa5dc04a1ce9bd5 https://www.encodeproject.org/files/ENCFF976HVZ/@@download/ENCFF976HVZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF122ROW bed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF587YQL, ENCFF781DUP, ENCFF836XNP 902449 ENCODE Processing Pipeline 83d38f3ac6e23ca7b1a0a6c4c8745f31 https://www.encodeproject.org/files/ENCFF122ROW/@@download/ENCFF122ROW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF316HPS bigBed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF997HLR 2678473 ENCODE Processing Pipeline 7deda78e68a152bb2e315fbcf29ba33a https://www.encodeproject.org/files/ENCFF316HPS/@@download/ENCFF316HPS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF173SBM bigBed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF976HVZ 2617707 ENCODE Processing Pipeline 1393b655e8dfcac20ed2a19c587f19cd https://www.encodeproject.org/files/ENCFF173SBM/@@download/ENCFF173SBM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF748KYJ bigBed narrowPeak peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF122ROW 2759613 ENCODE Processing Pipeline d2ac044bead5e1d5368e24caacb1471b https://www.encodeproject.org/files/ENCFF748KYJ/@@download/ENCFF748KYJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF527HFM bigWig signal p-value ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF836XNP 590840857 ENCODE Processing Pipeline 7e0dc4173a31c428033df3f52625d234 https://www.encodeproject.org/files/ENCFF527HFM/@@download/ENCFF527HFM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF294CVN bigWig signal p-value ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF587YQL, ENCFF781DUP 580110616 ENCODE Processing Pipeline bfceb09189fd4f1379dc215571328c7c https://www.encodeproject.org/files/ENCFF294CVN/@@download/ENCFF294CVN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF784AFL bigWig signal p-value ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF587YQL, ENCFF781DUP, ENCFF836XNP 830472461 ENCODE Processing Pipeline 40989925b9839b3fd37cab52f0695055 https://www.encodeproject.org/files/ENCFF784AFL/@@download/ENCFF784AFL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF653AYQ bigWig fold change over control ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF548IIV, ENCFF836XNP 583912142 ENCODE Processing Pipeline 4fe7d651c211754959545eade61daddb https://www.encodeproject.org/files/ENCFF653AYQ/@@download/ENCFF653AYQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF222YPM bigWig fold change over control ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF587YQL, ENCFF781DUP 562940073 ENCODE Processing Pipeline 20a11453da540986f247ff4e15852d71 https://www.encodeproject.org/files/ENCFF222YPM/@@download/ENCFF222YPM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF399YKQ bigWig fold change over control ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF548IIV, ENCFF587YQL, ENCFF781DUP, ENCFF836XNP 1050449159 ENCODE Processing Pipeline d2623559c31ee4c455cce787fa81bddd https://www.encodeproject.org/files/ENCFF399YKQ/@@download/ENCFF399YKQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF448EOM bed narrowPeak replicated peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF122ROW, ENCFF976HVZ, ENCFF997HLR 970032 ENCODE Processing Pipeline 97126907b789ad5ca465e465c1b32fca https://www.encodeproject.org/files/ENCFF448EOM/@@download/ENCFF448EOM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF228DDK bigBed narrowPeak replicated peaks ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF448EOM 2233891 ENCODE Processing Pipeline da1c34a4b1a3d828622b2931c568b702 https://www.encodeproject.org/files/ENCFF228DDK/@@download/ENCFF228DDK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF942UQV fastq reads ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2113468186 Bing Ren, UCSD 360e6e491da4dc9d79bef1a7c0576752 SRA:SRR4235773 https://www.encodeproject.org/files/ENCFF942UQV/@@download/ENCFF942UQV.fastq.gz Illumina HiSeq 4000 released ENCFF914QXH fastq reads ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2305455950 Bing Ren, UCSD d12d87501ec9aafab45ba41838937fdb SRA:SRR4235772 https://www.encodeproject.org/files/ENCFF914QXH/@@download/ENCFF914QXH.fastq.gz Illumina HiSeq 4000 released ENCFF493RAS bam unfiltered alignments ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF942UQV 2996119743 ENCODE Processing Pipeline be210fb4d22e6bb6280488a86d880fb3 https://www.encodeproject.org/files/ENCFF493RAS/@@download/ENCFF493RAS.bam mm10 released ENCFF647GKF bam unfiltered alignments ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF914QXH 3161983060 ENCODE Processing Pipeline 0d0b06e8891f3f9b934096c9ee78836f https://www.encodeproject.org/files/ENCFF647GKF/@@download/ENCFF647GKF.bam mm10 released ENCFF298TEL bam alignments ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF942UQV 2223299049 ENCODE Processing Pipeline 4955a9e3c1155b1e702c892c6805bfb4 https://www.encodeproject.org/files/ENCFF298TEL/@@download/ENCFF298TEL.bam mm10 released ENCFF528BOJ bam alignments ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF914QXH 2343765635 ENCODE Processing Pipeline 56103fb96e76ef54254cdc8292475d8b https://www.encodeproject.org/files/ENCFF528BOJ/@@download/ENCFF528BOJ.bam mm10 released ENCFF002AFY fastq reads ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1187518926 Bing Ren, UCSD 72420b5d3e7b448019da59507df451fd SRA:SRR3653084 https://www.encodeproject.org/files/ENCFF002AFY/@@download/ENCFF002AFY.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APQ/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AFZ fastq reads ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1166637683 Bing Ren, UCSD c2c69ffa074c89415a166619e64af70a SRA:SRR3653086 https://www.encodeproject.org/files/ENCFF002AFZ/@@download/ENCFF002AFZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF219SLG bam alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFZ, ENCFF806TVZ 888977218 ENCODE Processing Pipeline 60aec9ae4f4167c19a06194a0b0d7600 https://www.encodeproject.org/files/ENCFF219SLG/@@download/ENCFF219SLG.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF178TMT fastq reads ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 537431322 Bing Ren, UCSD b208c8e8e14b9e93ee0b7a30150b8309 SRA:SRR3653085 https://www.encodeproject.org/files/ENCFF178TMT/@@download/ENCFF178TMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF707BZA bam alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFY, ENCFF178TMT, ENCFF806TVZ 1325899404 ENCODE Processing Pipeline adcec76114cc94a2a9b2ea7da8f39363 https://www.encodeproject.org/files/ENCFF707BZA/@@download/ENCFF707BZA.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF298ISD bigWig fold change over control ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF707BZA 539287413 ENCODE Processing Pipeline 26500097841985c5826df9fecf3034ad https://www.encodeproject.org/files/ENCFF298ISD/@@download/ENCFF298ISD.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF386QMW bed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF707BZA 960316 ENCODE Processing Pipeline 36245f436f595fcc7ff1233267f02dc6 https://www.encodeproject.org/files/ENCFF386QMW/@@download/ENCFF386QMW.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF030IYJ bed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF219SLG, ENCFF351THT, ENCFF528CCC 773793 ENCODE Processing Pipeline a6f0ee28027ef3616d8f9ae797541082 https://www.encodeproject.org/files/ENCFF030IYJ/@@download/ENCFF030IYJ.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF825YJF bed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF219SLG, ENCFF351THT, ENCFF528CCC, ENCFF707BZA 572918 ENCODE Processing Pipeline bf1ae812c4f4bcc43fe5d58de1be3a6c https://www.encodeproject.org/files/ENCFF825YJF/@@download/ENCFF825YJF.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF860XEU bigBed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF386QMW 2164520 ENCODE Processing Pipeline 9652cdd1837ea85f1c899a2a7479a84d https://www.encodeproject.org/files/ENCFF860XEU/@@download/ENCFF860XEU.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF185RNZ bigBed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF825YJF 1243890 ENCODE Processing Pipeline 5b2576fcad4495056946cfedd5704300 https://www.encodeproject.org/files/ENCFF185RNZ/@@download/ENCFF185RNZ.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF919JVK bigWig signal p-value ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF351THT, ENCFF528CCC, ENCFF707BZA 541495276 ENCODE Processing Pipeline 4c398fe9942671d1370f8da41b1ddf5d https://www.encodeproject.org/files/ENCFF919JVK/@@download/ENCFF919JVK.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF624BBP bigWig signal p-value ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF219SLG, ENCFF351THT, ENCFF528CCC, ENCFF707BZA 724744242 ENCODE Processing Pipeline 47e19966e308ab07896cd8dd28a01208 https://www.encodeproject.org/files/ENCFF624BBP/@@download/ENCFF624BBP.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF354SIU bigWig fold change over control ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF219SLG, ENCFF351THT, ENCFF528CCC, ENCFF707BZA 807692741 ENCODE Processing Pipeline 22df742183ec84232be8392ed8ee12f4 https://www.encodeproject.org/files/ENCFF354SIU/@@download/ENCFF354SIU.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF381EQM bed narrowPeak replicated peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF030IYJ, ENCFF386QMW, ENCFF825YJF 376774 ENCODE Processing Pipeline 2e4d86f9354e2025da403a842c7a440a https://www.encodeproject.org/files/ENCFF381EQM/@@download/ENCFF381EQM.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF051PCB bigBed narrowPeak replicated peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF381EQM 931217 ENCODE Processing Pipeline 21b11232e4b81bbcf35e977738e9e12c https://www.encodeproject.org/files/ENCFF051PCB/@@download/ENCFF051PCB.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF378OEO bam unfiltered alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFZ, ENCFF018NEO 1283637177 ENCODE Processing Pipeline bedc16e7d394f455bc40e912835ad00e https://www.encodeproject.org/files/ENCFF378OEO/@@download/ENCFF378OEO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF229QOH bam unfiltered alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFY, ENCFF018NEO, ENCFF178TMT 1831227965 ENCODE Processing Pipeline 85cebb7045624c2f7caf87b16b3a677c https://www.encodeproject.org/files/ENCFF229QOH/@@download/ENCFF229QOH.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF392EKM bam alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFZ, ENCFF018NEO 888755234 ENCODE Processing Pipeline 03ac2b40b788bedb997e2e9f05842b72 https://www.encodeproject.org/files/ENCFF392EKM/@@download/ENCFF392EKM.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF159MVW bam alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFY, ENCFF018NEO, ENCFF178TMT 1190846244 ENCODE Processing Pipeline aebd13a0c5fbcddb836c789dc8bf7483 https://www.encodeproject.org/files/ENCFF159MVW/@@download/ENCFF159MVW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF194YTR bigBed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF053XBD 979227 ENCODE Processing Pipeline 12243202b711b4e8c2d1d656d64e8f7b https://www.encodeproject.org/files/ENCFF194YTR/@@download/ENCFF194YTR.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF569GVO bigBed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009AZK 2157914 ENCODE Processing Pipeline 56193b96de82c7b0d37fc249aa20d3c6 https://www.encodeproject.org/files/ENCFF569GVO/@@download/ENCFF569GVO.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF009AZK bed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF159MVW, ENCFF411XWG 960006 ENCODE Processing Pipeline e90ad714436a7bcc3705ef31c79fe505 https://www.encodeproject.org/files/ENCFF009AZK/@@download/ENCFF009AZK.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF053XBD bed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF392EKM 420164 ENCODE Processing Pipeline 578d00c32538a813229eb92b880400af https://www.encodeproject.org/files/ENCFF053XBD/@@download/ENCFF053XBD.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF617KRK bed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF159MVW, ENCFF392EKM, ENCFF411XWG 770907 ENCODE Processing Pipeline 62343dfae79bd8397afe6a37fd27904a https://www.encodeproject.org/files/ENCFF617KRK/@@download/ENCFF617KRK.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF887PZX bigBed narrowPeak peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF617KRK 1662816 ENCODE Processing Pipeline 8c638bb2581e016109a9f07c02c2aa8b https://www.encodeproject.org/files/ENCFF887PZX/@@download/ENCFF887PZX.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF689WFN bigWig signal p-value ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF159MVW, ENCFF411XWG 537336177 ENCODE Processing Pipeline ebcc6a8c47dedc56d764d8fa47857eb0 https://www.encodeproject.org/files/ENCFF689WFN/@@download/ENCFF689WFN.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF992GMM bigWig signal p-value ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF392EKM 395727544 ENCODE Processing Pipeline f31d2fb326451ca525a0f04371845693 https://www.encodeproject.org/files/ENCFF992GMM/@@download/ENCFF992GMM.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF915QWF bigWig signal p-value ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF159MVW, ENCFF392EKM, ENCFF411XWG 694984784 ENCODE Processing Pipeline 61572119e8c24a545571c8f7034acf2a https://www.encodeproject.org/files/ENCFF915QWF/@@download/ENCFF915QWF.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF873CSD bigWig fold change over control ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF037YEE, ENCFF159MVW, ENCFF411XWG 534164377 ENCODE Processing Pipeline be28bea9e6a646c697996b35aef66ef7 https://www.encodeproject.org/files/ENCFF873CSD/@@download/ENCFF873CSD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF457PCI bigWig fold change over control ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF392EKM 392481244 ENCODE Processing Pipeline 50822f63b5f3dd6b82ac7fe612c5975e https://www.encodeproject.org/files/ENCFF457PCI/@@download/ENCFF457PCI.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF900BKA bigWig fold change over control ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF159MVW, ENCFF392EKM, ENCFF411XWG 786493149 ENCODE Processing Pipeline 9eac1a8f6a25b006375877e0047a4ffc https://www.encodeproject.org/files/ENCFF900BKA/@@download/ENCFF900BKA.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF591TWD bed narrowPeak replicated peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009AZK, ENCFF053XBD, ENCFF617KRK 325708 ENCODE Processing Pipeline 1a28064babb9a4b5425e43c775d9e343 https://www.encodeproject.org/files/ENCFF591TWD/@@download/ENCFF591TWD.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF796QWD bigBed narrowPeak replicated peaks ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF591TWD 811774 ENCODE Processing Pipeline 5371a47c654f8fcdcffcfa61584f7d47 https://www.encodeproject.org/files/ENCFF796QWD/@@download/ENCFF796QWD.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF825WXN fastq reads ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1134812872 Bing Ren, UCSD f5ee38c03aa048893e28a414675d6544 SRA:SRR4235687 https://www.encodeproject.org/files/ENCFF825WXN/@@download/ENCFF825WXN.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released moderate library complexity, mild to moderate bottlenecking ENCFF255IGL fastq reads ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2648379122 Bing Ren, UCSD 58358888437a0b23253f0536b1df3f3b SRA:SRR4235688 https://www.encodeproject.org/files/ENCFF255IGL/@@download/ENCFF255IGL.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released moderate library complexity, mild to moderate bottlenecking ENCFF833BWD bam unfiltered alignments ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF825WXN 1401936462 ENCODE Processing Pipeline 0af0fa1d2735ac1b79cee444538d3a6c https://www.encodeproject.org/files/ENCFF833BWD/@@download/ENCFF833BWD.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF364EBG bam unfiltered alignments ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF255IGL 3010970179 ENCODE Processing Pipeline 1640f44e919b33dafe2a289a3e56e706 https://www.encodeproject.org/files/ENCFF364EBG/@@download/ENCFF364EBG.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF224DTN bam alignments ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF825WXN 1023831758 ENCODE Processing Pipeline a8daeceea784a0be6f34187e23921d5f https://www.encodeproject.org/files/ENCFF224DTN/@@download/ENCFF224DTN.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF200DJC bam alignments ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF255IGL 1936561898 ENCODE Processing Pipeline c199b253606a7bfe238348a470fea983 https://www.encodeproject.org/files/ENCFF200DJC/@@download/ENCFF200DJC.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF605OXT bigBed narrowPeak peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF045XZT 2017491 ENCODE Processing Pipeline 707da1aa690e147d9cd7b33142cebdf1 https://www.encodeproject.org/files/ENCFF605OXT/@@download/ENCFF605OXT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF045XZT bed narrowPeak peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF224DTN, ENCFF298TEL 632969 ENCODE Processing Pipeline 8ed638ae6f0f1575760ebdaaa2d2b70e https://www.encodeproject.org/files/ENCFF045XZT/@@download/ENCFF045XZT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF510GAL bed narrowPeak peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF200DJC, ENCFF224DTN, ENCFF298TEL, ENCFF528BOJ 861231 ENCODE Processing Pipeline 521d3853afefd645ccbc845fb7c84838 https://www.encodeproject.org/files/ENCFF510GAL/@@download/ENCFF510GAL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF386HOF bed narrowPeak peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF200DJC, ENCFF528BOJ 827597 ENCODE Processing Pipeline fcacf1279bff392e74919ed3697670fd https://www.encodeproject.org/files/ENCFF386HOF/@@download/ENCFF386HOF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF497NZL bigBed narrowPeak peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF386HOF 2490053 ENCODE Processing Pipeline 929447fb5129415d4b709ba1597e7b08 https://www.encodeproject.org/files/ENCFF497NZL/@@download/ENCFF497NZL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF864KQD bigBed narrowPeak peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF510GAL 2524768 ENCODE Processing Pipeline 645d70f1196c13eecb993d4051d35a11 https://www.encodeproject.org/files/ENCFF864KQD/@@download/ENCFF864KQD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF898UND bigWig signal p-value ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF224DTN, ENCFF298TEL 519025380 ENCODE Processing Pipeline 43a6113fb4899e3295def6d2419bea0a https://www.encodeproject.org/files/ENCFF898UND/@@download/ENCFF898UND.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF091IUS bigWig signal p-value ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF200DJC, ENCFF528BOJ 750809762 ENCODE Processing Pipeline 96f35c1440e3f3c9a24356e3ea5b46c5 https://www.encodeproject.org/files/ENCFF091IUS/@@download/ENCFF091IUS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF891DCI bigWig fold change over control ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF200DJC, ENCFF528BOJ 693956488 ENCODE Processing Pipeline 915c1baed03a1e5d22a33b19c938a012 https://www.encodeproject.org/files/ENCFF891DCI/@@download/ENCFF891DCI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF433PYX bigWig signal p-value ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF200DJC, ENCFF224DTN, ENCFF298TEL, ENCFF528BOJ 905121664 ENCODE Processing Pipeline 7f7f0ff82c84f4e98a0798612e37aab8 https://www.encodeproject.org/files/ENCFF433PYX/@@download/ENCFF433PYX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF685ZTT bigWig fold change over control ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF224DTN, ENCFF298TEL 458462773 ENCODE Processing Pipeline 56c8f977cf39a97737a61c13541003e9 https://www.encodeproject.org/files/ENCFF685ZTT/@@download/ENCFF685ZTT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF197CLN bigWig fold change over control ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF200DJC, ENCFF224DTN, ENCFF298TEL, ENCFF528BOJ 1061693342 ENCODE Processing Pipeline 67a2a6aa04e19d8b6a2a301dfd11f0c3 https://www.encodeproject.org/files/ENCFF197CLN/@@download/ENCFF197CLN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF079TEZ bigBed narrowPeak replicated peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF110OOK 1879064 ENCODE Processing Pipeline d21a8762f23fce30fd7e90343c6253c9 https://www.encodeproject.org/files/ENCFF079TEZ/@@download/ENCFF079TEZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF110OOK bed narrowPeak replicated peaks ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF045XZT, ENCFF386HOF, ENCFF510GAL 822631 ENCODE Processing Pipeline 9918823a28a1715663117de9ded286db https://www.encodeproject.org/files/ENCFF110OOK/@@download/ENCFF110OOK.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001MCP bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MCY 4329377291 Ross Hardison, PennState bd94a53e7d35545f7979fd7b74bd4139 https://www.encodeproject.org/files/ENCFF001MCP/@@download/ENCFF001MCP.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MCQ bigBed broadPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDP 893571 Ross Hardison, PennState e8bc320aeb23755181700dfdb6290434 https://www.encodeproject.org/files/ENCFF001MCQ/@@download/ENCFF001MCQ.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MCS bigBed broadPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDQ 789841 Ross Hardison, PennState 5eeb975cd55594660efbf74cfbfe4b45 https://www.encodeproject.org/files/ENCFF001MCS/@@download/ENCFF001MCS.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MCT bigBed broadPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDR 1076288 Ross Hardison, PennState da35b53c98e66da6edf87321aa9def4a https://www.encodeproject.org/files/ENCFF001MCT/@@download/ENCFF001MCT.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MCU bigWig signal ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 3717079527 Ross Hardison, PennState 3b14b3a8eb2d65dc5cc95c961625d846 https://www.encodeproject.org/files/ENCFF001MCU/@@download/ENCFF001MCU.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MCV bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MCZ 5090088828 Ross Hardison, PennState 7dee35bc579ed961beead2910a2e5865 https://www.encodeproject.org/files/ENCFF001MCV/@@download/ENCFF001MCV.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MCW bigWig signal ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 4814873229 Ross Hardison, PennState d8e59ca68a419545a6e74110f3272761 https://www.encodeproject.org/files/ENCFF001MCW/@@download/ENCFF001MCW.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MCX bigWig signal ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 5395748076 Ross Hardison, PennState fbdd78417491e80df38aa56e4fdd4196 https://www.encodeproject.org/files/ENCFF001MCX/@@download/ENCFF001MCX.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MCY fastq reads ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4330518743 Ross Hardison, PennState 0bc88d37f21ceeae6aafcaa5cab91a07 https://www.encodeproject.org/files/ENCFF001MCY/@@download/ENCFF001MCY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSM/ released mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length biological replicates with identical biosample ENCFF001MCZ fastq reads ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4835171835 Ross Hardison, PennState d39a2067a9af1b0c297f537751e376f1 https://www.encodeproject.org/files/ENCFF001MCZ/@@download/ENCFF001MCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSW/ released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001YDP bed broadPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 515921 Ross Hardison, PennState 6a15b2a7f84a6d8f5b0d43a29537ef05 https://www.encodeproject.org/files/ENCFF001YDP/@@download/ENCFF001YDP.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDQ bed broadPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 446930 Ross Hardison, PennState 656450cfb054431079e4a021d5340bcb https://www.encodeproject.org/files/ENCFF001YDQ/@@download/ENCFF001YDQ.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDR bed broadPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 624147 Ross Hardison, PennState 0d3b563362440819e3125985dfdfdf66 https://www.encodeproject.org/files/ENCFF001YDR/@@download/ENCFF001YDR.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF992TZZ bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MCZ, ENCFF806TVZ 3907160939 ENCODE Processing Pipeline 72dd3c3d9ff3b0a8b73608fa9844551e https://www.encodeproject.org/files/ENCFF992TZZ/@@download/ENCFF992TZZ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF445VRA bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MCY, ENCFF806TVZ 3467054454 ENCODE Processing Pipeline d98ee20cba8084334e6dd8dc6ba2524d https://www.encodeproject.org/files/ENCFF445VRA/@@download/ENCFF445VRA.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF959CLA bam unfiltered alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCZ, ENCFF018NEO 4033219556 ENCODE Processing Pipeline 33b2b473e72b9f2336724eae7c7ac99e https://www.encodeproject.org/files/ENCFF959CLA/@@download/ENCFF959CLA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF184NAJ bam unfiltered alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCY, ENCFF018NEO 3483809000 ENCODE Processing Pipeline 3ee81b8f66a98a614a0a66af3e6bd6bc https://www.encodeproject.org/files/ENCFF184NAJ/@@download/ENCFF184NAJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF373VVE bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCY, ENCFF018NEO 2595913303 ENCODE Processing Pipeline 7524e4c9dc1c0a25d52f5f1cd3a1c02d https://www.encodeproject.org/files/ENCFF373VVE/@@download/ENCFF373VVE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF782LLP bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCZ, ENCFF018NEO 2890268109 ENCODE Processing Pipeline b6e8f26fb8b753a5c12b2db1e6684820 https://www.encodeproject.org/files/ENCFF782LLP/@@download/ENCFF782LLP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF548TTV bed narrowPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF373VVE, ENCFF383IWZ, ENCFF676LVI, ENCFF782LLP 3728009 ENCODE Processing Pipeline 416450b7cd1d2bab83b9791e3ae9baf5 https://www.encodeproject.org/files/ENCFF548TTV/@@download/ENCFF548TTV.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF617EWX bed narrowPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF373VVE, ENCFF383IWZ, ENCFF676LVI 2947723 ENCODE Processing Pipeline 3826125e8055a9c827e9aae18de75422 https://www.encodeproject.org/files/ENCFF617EWX/@@download/ENCFF617EWX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF338WYS bed narrowPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF782LLP 4499512 ENCODE Processing Pipeline c2aeba5589ab60593b5f05e28bca4ca5 https://www.encodeproject.org/files/ENCFF338WYS/@@download/ENCFF338WYS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF846WIZ bigBed narrowPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF338WYS 9543571 ENCODE Processing Pipeline 19d9227c31488cb4cd60f3cf233b377e https://www.encodeproject.org/files/ENCFF846WIZ/@@download/ENCFF846WIZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF423PQW bigBed narrowPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF617EWX 5932299 ENCODE Processing Pipeline fff61cb4424034abe89adcd60b085ef3 https://www.encodeproject.org/files/ENCFF423PQW/@@download/ENCFF423PQW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF932UFL bigBed narrowPeak peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF548TTV 7606087 ENCODE Processing Pipeline 79eb149f768d6c94d2bd042803eda0c5 https://www.encodeproject.org/files/ENCFF932UFL/@@download/ENCFF932UFL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF915ONN bigWig signal p-value ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF373VVE, ENCFF383IWZ, ENCFF676LVI 1007228690 ENCODE Processing Pipeline cdbb3dcef622279a9edde4129b6c8fe0 https://www.encodeproject.org/files/ENCFF915ONN/@@download/ENCFF915ONN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF864QSO bigWig signal p-value ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF782LLP 1389954905 ENCODE Processing Pipeline 2d8c66b4d82496daa1c530ce8c75f596 https://www.encodeproject.org/files/ENCFF864QSO/@@download/ENCFF864QSO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF225DXV bigWig signal p-value ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF373VVE, ENCFF383IWZ, ENCFF676LVI, ENCFF782LLP 1357176185 ENCODE Processing Pipeline 379e5e49a3d6824195e93c7474f0ab6c https://www.encodeproject.org/files/ENCFF225DXV/@@download/ENCFF225DXV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF604OLL bigWig fold change over control ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF373VVE, ENCFF383IWZ, ENCFF676LVI 1001571075 ENCODE Processing Pipeline 1e9b881a581b47791280d1b520e404b3 https://www.encodeproject.org/files/ENCFF604OLL/@@download/ENCFF604OLL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF520FCJ bigWig fold change over control ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF782LLP 1262902912 ENCODE Processing Pipeline 5f3c5fb8ccbc139542d8c9b8f125f5a3 https://www.encodeproject.org/files/ENCFF520FCJ/@@download/ENCFF520FCJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF750FWM bigWig fold change over control ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF373VVE, ENCFF383IWZ, ENCFF676LVI, ENCFF782LLP 1629923240 ENCODE Processing Pipeline 67f7fad6c01834da085e6d60d071e32b https://www.encodeproject.org/files/ENCFF750FWM/@@download/ENCFF750FWM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF269YZN bigBed narrowPeak replicated peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF878WCJ 6524979 ENCODE Processing Pipeline 73ebe15b1ed3a6a3bd832efeb77da22b https://www.encodeproject.org/files/ENCFF269YZN/@@download/ENCFF269YZN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF878WCJ bed narrowPeak replicated peaks ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF338WYS, ENCFF548TTV, ENCFF617EWX 4498978 ENCODE Processing Pipeline 537cdaa98c0d173f47a99ccfa2ec151b https://www.encodeproject.org/files/ENCFF878WCJ/@@download/ENCFF878WCJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001ZRY fastq reads ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 894252944 Bing Ren, UCSD 42089b0cbc2d6477073aa1d11710bf39 SRA:SRR3652361 https://www.encodeproject.org/files/ENCFF001ZRY/@@download/ENCFF001ZRY.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZRZ fastq reads ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 940385197 Bing Ren, UCSD e367f1b6dfa72d279bfda35b79fcca14 SRA:SRR3652363 https://www.encodeproject.org/files/ENCFF001ZRZ/@@download/ENCFF001ZRZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF822LXA fastq reads ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 448289109 Bing Ren, UCSD d1dab5ad4e9ea3009dedf76afbe4a5b9 SRA:SRR3652364 https://www.encodeproject.org/files/ENCFF822LXA/@@download/ENCFF822LXA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF115DQJ fastq reads ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 623678698 Bing Ren, UCSD 388916d406d7ca4dcf75b3930c8958ef SRA:SRR3652362 https://www.encodeproject.org/files/ENCFF115DQJ/@@download/ENCFF115DQJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF471EOJ bam alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRZ, ENCFF806TVZ, ENCFF822LXA 1331437354 ENCODE Processing Pipeline 6125326bed0df131c555ed46a604605a https://www.encodeproject.org/files/ENCFF471EOJ/@@download/ENCFF471EOJ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF912QZX bam alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRY, ENCFF115DQJ, ENCFF806TVZ 1405646840 ENCODE Processing Pipeline 1885f21230762e80f4804c53c64294b0 https://www.encodeproject.org/files/ENCFF912QZX/@@download/ENCFF912QZX.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF561ZKC bed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF912QZX, ENCFF976TWF 1303066 ENCODE Processing Pipeline bdfaee22db6c22eb04229ecf50baf483 https://www.encodeproject.org/files/ENCFF561ZKC/@@download/ENCFF561ZKC.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF856LUF bed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF471EOJ, ENCFF912QZX, ENCFF976TWF 1496333 ENCODE Processing Pipeline ecc21e6d8147a664e4285c0f17be50a4 https://www.encodeproject.org/files/ENCFF856LUF/@@download/ENCFF856LUF.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF434YEV bed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF471EOJ, ENCFF976TWF 2134358 ENCODE Processing Pipeline f0bd9e97ab5fec5cb11c43eb8878dbdb https://www.encodeproject.org/files/ENCFF434YEV/@@download/ENCFF434YEV.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF713HIZ bigBed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF561ZKC 3026254 ENCODE Processing Pipeline 8cb434231b45c99cb58cb22aa29b2e90 https://www.encodeproject.org/files/ENCFF713HIZ/@@download/ENCFF713HIZ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF697BQG bigBed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF434YEV 4642495 ENCODE Processing Pipeline 93ebb738a6c8601c32a9ff6af2441875 https://www.encodeproject.org/files/ENCFF697BQG/@@download/ENCFF697BQG.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF226VJZ bigBed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF856LUF 3340058 ENCODE Processing Pipeline 1a5b8f6d29f3dbc594f1d69a1a731be9 https://www.encodeproject.org/files/ENCFF226VJZ/@@download/ENCFF226VJZ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF148UBS bigWig signal p-value ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF912QZX, ENCFF976TWF 511055632 ENCODE Processing Pipeline 19481aef3cd7598797b597488a47cc15 https://www.encodeproject.org/files/ENCFF148UBS/@@download/ENCFF148UBS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF741LGB bigWig signal p-value ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF471EOJ, ENCFF976TWF 484052500 ENCODE Processing Pipeline 8310f92c5780ef7b72ba6ebcaaae6291 https://www.encodeproject.org/files/ENCFF741LGB/@@download/ENCFF741LGB.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF415LZD bigWig signal p-value ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF471EOJ, ENCFF912QZX, ENCFF976TWF 528585906 ENCODE Processing Pipeline c0d078cb24698d331ed3d1f435debb18 https://www.encodeproject.org/files/ENCFF415LZD/@@download/ENCFF415LZD.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF346HGR bigWig fold change over control ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF912QZX, ENCFF976TWF 507582077 ENCODE Processing Pipeline 4307ea61b541b9913e8b7fd2c5797638 https://www.encodeproject.org/files/ENCFF346HGR/@@download/ENCFF346HGR.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF452GMZ bigWig fold change over control ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF471EOJ, ENCFF976TWF 492381332 ENCODE Processing Pipeline 67c7cca5f833ceb77340b594cee8c8fd https://www.encodeproject.org/files/ENCFF452GMZ/@@download/ENCFF452GMZ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF824SQG bigBed narrowPeak replicated peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF847IKY 2700744 ENCODE Processing Pipeline 8e9a0d62b4af12bcd8e5a8496595ca33 https://www.encodeproject.org/files/ENCFF824SQG/@@download/ENCFF824SQG.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF813EPP bigWig fold change over control ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF471EOJ, ENCFF912QZX, ENCFF976TWF 809909535 ENCODE Processing Pipeline 99019a7c1e888af69eb1e4e566fd0ab8 https://www.encodeproject.org/files/ENCFF813EPP/@@download/ENCFF813EPP.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF847IKY bed narrowPeak replicated peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF434YEV, ENCFF561ZKC, ENCFF856LUF 1401727 ENCODE Processing Pipeline 865726e84aefd147464b93e707212282 https://www.encodeproject.org/files/ENCFF847IKY/@@download/ENCFF847IKY.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF960MPX bam unfiltered alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRZ, ENCFF018NEO, ENCFF822LXA 1689971462 ENCODE Processing Pipeline f64bfbe7160a069bd098d7a650fc8ebb https://www.encodeproject.org/files/ENCFF960MPX/@@download/ENCFF960MPX.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF709DLH bam unfiltered alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRY, ENCFF018NEO, ENCFF115DQJ 1806464384 ENCODE Processing Pipeline 488f3b3aea3c62086399811c7ce6c9da https://www.encodeproject.org/files/ENCFF709DLH/@@download/ENCFF709DLH.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF539LFN bam alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRZ, ENCFF018NEO, ENCFF822LXA 1216017076 ENCODE Processing Pipeline 6b15b691f19a678976a4bc7cd212dbc6 https://www.encodeproject.org/files/ENCFF539LFN/@@download/ENCFF539LFN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF118NNH bam alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRY, ENCFF018NEO, ENCFF115DQJ 1252699452 ENCODE Processing Pipeline cb43995558f4459a23f8ea895c709b3b https://www.encodeproject.org/files/ENCFF118NNH/@@download/ENCFF118NNH.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF155YAC bed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF118NNH, ENCFF563TGK, ENCFF903TSE 1245200 ENCODE Processing Pipeline 08ae7c442c25f051a1e939ff21739ed6 https://www.encodeproject.org/files/ENCFF155YAC/@@download/ENCFF155YAC.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF822ELF bed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF539LFN, ENCFF563TGK, ENCFF903TSE 2239780 ENCODE Processing Pipeline 62658b3035cce298aca4d1871c76ab1a https://www.encodeproject.org/files/ENCFF822ELF/@@download/ENCFF822ELF.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF297ALM bed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118NNH, ENCFF539LFN, ENCFF563TGK, ENCFF903TSE 1442657 ENCODE Processing Pipeline f52fbba57cd74dfd88f3638276deeaba https://www.encodeproject.org/files/ENCFF297ALM/@@download/ENCFF297ALM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF207TRR bigBed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF155YAC 2927861 ENCODE Processing Pipeline ed327c66c034c829c2e4e749ff9eb455 https://www.encodeproject.org/files/ENCFF207TRR/@@download/ENCFF207TRR.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF780LGH bigBed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF822ELF 4840707 ENCODE Processing Pipeline fa91b7afb8e9bcf0e0144d8c6741bac5 https://www.encodeproject.org/files/ENCFF780LGH/@@download/ENCFF780LGH.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF276SQF bigBed narrowPeak peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297ALM 3242199 ENCODE Processing Pipeline 7dd1afad2af3ecb6c6cd78d8b00fc892 https://www.encodeproject.org/files/ENCFF276SQF/@@download/ENCFF276SQF.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF778KZI bigWig signal p-value ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF118NNH, ENCFF563TGK, ENCFF903TSE 442004425 ENCODE Processing Pipeline 86148c554cab62cde24015bd842ee680 https://www.encodeproject.org/files/ENCFF778KZI/@@download/ENCFF778KZI.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF545DCU bigWig signal p-value ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF539LFN, ENCFF563TGK, ENCFF903TSE 423987868 ENCODE Processing Pipeline e5034c167f2e1a740c727a5d74e79d15 https://www.encodeproject.org/files/ENCFF545DCU/@@download/ENCFF545DCU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF539HML bigWig signal p-value ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118NNH, ENCFF539LFN, ENCFF563TGK, ENCFF903TSE 522383293 ENCODE Processing Pipeline e9ae4845ba50c3f1ffe9d336f38f40d0 https://www.encodeproject.org/files/ENCFF539HML/@@download/ENCFF539HML.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF531BOO bigWig fold change over control ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF118NNH, ENCFF563TGK, ENCFF903TSE 505965106 ENCODE Processing Pipeline 92d793488d91c4a7db6661b7e1541b7b https://www.encodeproject.org/files/ENCFF531BOO/@@download/ENCFF531BOO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF142ZTL bigWig fold change over control ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF539LFN, ENCFF563TGK, ENCFF903TSE 490081943 ENCODE Processing Pipeline b553c63d1df848b4bafda4806cc739ff https://www.encodeproject.org/files/ENCFF142ZTL/@@download/ENCFF142ZTL.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF956BOI bigWig fold change over control ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118NNH, ENCFF539LFN, ENCFF563TGK, ENCFF903TSE 798088102 ENCODE Processing Pipeline 459f0d0bd97b9b788dde7f7cc420617a https://www.encodeproject.org/files/ENCFF956BOI/@@download/ENCFF956BOI.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF352OIG bed narrowPeak replicated peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF155YAC, ENCFF297ALM, ENCFF822ELF 1354478 ENCODE Processing Pipeline bdda3524f9260241b163660e1a3e6477 https://www.encodeproject.org/files/ENCFF352OIG/@@download/ENCFF352OIG.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF837PXP bigBed narrowPeak replicated peaks ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF352OIG 2628851 ENCODE Processing Pipeline d995ba5eb92e96e03215926447668d4d https://www.encodeproject.org/files/ENCFF837PXP/@@download/ENCFF837PXP.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001JXB bam alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 443319462 Bing Ren, UCSD 9ef9f1c2ea99564e1c8166a1ea49af0a https://www.encodeproject.org/files/ENCFF001JXB/@@download/ENCFF001JXB.bam mm9 released low read length missing derived_from, NTR biosample insufficient read depth ENCFF001JXD bam alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001JXL 403241220 Bing Ren, UCSD ec9ff82bf2a1d383dfa1e85887892889 https://www.encodeproject.org/files/ENCFF001JXD/@@download/ENCFF001JXD.bam mm9 released low read length NTR biosample insufficient read depth ENCFF001JXG bigWig signal ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001JXB, ENCFF001JXD 75748637 Bing Ren, UCSD f2cbab442178f2a8f9426e4e3655ac3a https://www.encodeproject.org/files/ENCFF001JXG/@@download/ENCFF001JXG.bigWig mm9 released low read length NTR biosample insufficient read depth ENCFF001JXL fastq reads ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 417293632 Bing Ren, UCSD 7f4311ba3e256df547039e51973daa34 https://www.encodeproject.org/files/ENCFF001JXL/@@download/ENCFF001JXL.fastq.gz Illumina HiSeq 2000 released low read length NTR biosample insufficient read depth ENCFF279RBD bam unfiltered alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001JXL, ENCFF806TVZ 503247635 J. Michael Cherry, Stanford 789c175e0dc99be0836bcd4d29e61892 https://www.encodeproject.org/files/ENCFF279RBD/@@download/ENCFF279RBD.bam mm10-minimal archived low read length NTR biosample insufficient read depth ENCFF717EAN fastq reads ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 328888038 Bing Ren, UCSD 217ff2705cdf32bb8bd27685628be71f https://www.encodeproject.org/files/ENCFF717EAN/@@download/ENCFF717EAN.fastq.gz Illumina HiSeq 2000 released low read length NTR biosample insufficient read depth ENCFF592QZO bam unfiltered alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF717EAN, ENCFF806TVZ 467567788 ENCODE Processing Pipeline 023385141fd1023d2cfb57f0287e0742 https://www.encodeproject.org/files/ENCFF592QZO/@@download/ENCFF592QZO.bam mm10-minimal archived low read length NTR biosample insufficient read depth ENCFF797NTG bam unfiltered alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF018NEO, ENCFF717EAN 468585690 ENCODE Processing Pipeline 827cc55082d9ff8b96475d064d7a0bf9 https://www.encodeproject.org/files/ENCFF797NTG/@@download/ENCFF797NTG.bam mm10 released low read length NTR biosample insufficient read depth ENCFF732PZF bam unfiltered alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXL, ENCFF018NEO 504265667 ENCODE Processing Pipeline a0aeb9baf3c095996a42a2f8cba25c41 https://www.encodeproject.org/files/ENCFF732PZF/@@download/ENCFF732PZF.bam mm10 released low read length NTR biosample insufficient read depth ENCFF595QRX bam alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF018NEO, ENCFF717EAN 315121460 ENCODE Processing Pipeline a395c9bc601178db3a7d97fde96cda71 https://www.encodeproject.org/files/ENCFF595QRX/@@download/ENCFF595QRX.bam mm10 released low read length NTR biosample insufficient read depth ENCFF498QAY bam alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXL, ENCFF018NEO 338120829 ENCODE Processing Pipeline 53b24a04a187389184be0478226480a1 https://www.encodeproject.org/files/ENCFF498QAY/@@download/ENCFF498QAY.bam mm10 released low read length NTR biosample insufficient read depth ENCFF001ZRW fastq reads ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1104436820 Bing Ren, UCSD 65a73882ba6b76fa521d5325ab5c668d SRA:SRR3653203 https://www.encodeproject.org/files/ENCFF001ZRW/@@download/ENCFF001ZRW.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length insufficient read depth, control insufficient read depth ENCFF001ZRX fastq reads ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1200838706 Bing Ren, UCSD 056d893d91382ccea97bb6360db953f3 SRA:SRR3653204 https://www.encodeproject.org/files/ENCFF001ZRX/@@download/ENCFF001ZRX.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length insufficient read depth, control insufficient read depth ENCFF937FVJ bam alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRX, ENCFF806TVZ 1115250103 ENCODE Processing Pipeline 9e8ffca6b12cc3735e8ac5bddf9664f5 https://www.encodeproject.org/files/ENCFF937FVJ/@@download/ENCFF937FVJ.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF122OEC bam alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRW, ENCFF806TVZ 1046436875 ENCODE Processing Pipeline bae25aa21609a7eeaf6427042dc88477 https://www.encodeproject.org/files/ENCFF122OEC/@@download/ENCFF122OEC.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF718WEA bed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF122OEC, ENCFF224PDN, ENCFF366UML, ENCFF937FVJ 2237958 ENCODE Processing Pipeline f22ff86f2124755fa39cff08a2397eda https://www.encodeproject.org/files/ENCFF718WEA/@@download/ENCFF718WEA.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF629AFX bed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF122OEC, ENCFF224PDN, ENCFF366UML 2649426 ENCODE Processing Pipeline c460a0b6ec68e4326a88e3fc66b6753b https://www.encodeproject.org/files/ENCFF629AFX/@@download/ENCFF629AFX.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF998USX bed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF937FVJ 2771489 ENCODE Processing Pipeline f021053407c49a403311c87d83502434 https://www.encodeproject.org/files/ENCFF998USX/@@download/ENCFF998USX.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF424AOC bigBed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF629AFX 5482887 ENCODE Processing Pipeline 1ad7ca983b3913f37affb509936fba58 https://www.encodeproject.org/files/ENCFF424AOC/@@download/ENCFF424AOC.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF212HMC bigBed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF718WEA 4678837 ENCODE Processing Pipeline 3235d1173f10931e70cd00e4bd1e1821 https://www.encodeproject.org/files/ENCFF212HMC/@@download/ENCFF212HMC.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF678SJX bigWig signal p-value ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF122OEC, ENCFF224PDN, ENCFF366UML 478673544 ENCODE Processing Pipeline 4172c9fc78f2e73f1e61f1d8434c2880 https://www.encodeproject.org/files/ENCFF678SJX/@@download/ENCFF678SJX.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF841DJO bigBed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF998USX 5732758 ENCODE Processing Pipeline cb0ee80552021c5b84674135e9633b94 https://www.encodeproject.org/files/ENCFF841DJO/@@download/ENCFF841DJO.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF566WOD bigWig signal p-value ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF937FVJ 496985167 ENCODE Processing Pipeline 6ec4ab319ca8cb652f51a1580b033219 https://www.encodeproject.org/files/ENCFF566WOD/@@download/ENCFF566WOD.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF977VCM bigWig fold change over control ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF122OEC, ENCFF224PDN, ENCFF366UML 454052390 ENCODE Processing Pipeline ab508acc590857a6ff64588921d8bb56 https://www.encodeproject.org/files/ENCFF977VCM/@@download/ENCFF977VCM.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF304URJ bigWig signal p-value ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF122OEC, ENCFF224PDN, ENCFF366UML, ENCFF937FVJ 561267193 ENCODE Processing Pipeline dc22e99e4e665d418b4e2a4787097a5e https://www.encodeproject.org/files/ENCFF304URJ/@@download/ENCFF304URJ.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF553QNY bigWig fold change over control ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF937FVJ 469667685 ENCODE Processing Pipeline b0c4193044157b6b6d65f24b4e63e612 https://www.encodeproject.org/files/ENCFF553QNY/@@download/ENCFF553QNY.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF113FNB bigBed narrowPeak replicated peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF192IPL 3846729 ENCODE Processing Pipeline 01e2478e5857f79db9087d5e0d3f8541 https://www.encodeproject.org/files/ENCFF113FNB/@@download/ENCFF113FNB.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF335QTF bigWig fold change over control ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF122OEC, ENCFF224PDN, ENCFF366UML, ENCFF937FVJ 742280148 ENCODE Processing Pipeline bf427a4853256f10fe70a21d39ac643f https://www.encodeproject.org/files/ENCFF335QTF/@@download/ENCFF335QTF.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF192IPL bed narrowPeak replicated peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF629AFX, ENCFF718WEA, ENCFF998USX 2211205 ENCODE Processing Pipeline c8b8eb60ee716f0b47af4fbb9bfd4b8a https://www.encodeproject.org/files/ENCFF192IPL/@@download/ENCFF192IPL.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF606BUL bam unfiltered alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRW, ENCFF018NEO 1418019304 ENCODE Processing Pipeline a6c9f94bf4ed104662b707cc1023e954 https://www.encodeproject.org/files/ENCFF606BUL/@@download/ENCFF606BUL.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF464BRB bam unfiltered alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRX, ENCFF018NEO 1537635195 ENCODE Processing Pipeline 32644f6174a8669bb43c1ce57e66bf43 https://www.encodeproject.org/files/ENCFF464BRB/@@download/ENCFF464BRB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF094SMC bam alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRW, ENCFF018NEO 1046239591 ENCODE Processing Pipeline 1341fb6a759db626c82286574187bea6 https://www.encodeproject.org/files/ENCFF094SMC/@@download/ENCFF094SMC.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF717NOZ bam alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRX, ENCFF018NEO 1115030072 ENCODE Processing Pipeline 9bb98d783ec323f6a850b274029174b5 https://www.encodeproject.org/files/ENCFF717NOZ/@@download/ENCFF717NOZ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF101XAM bed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF094SMC, ENCFF856WFI, ENCFF886TCK 2649631 ENCODE Processing Pipeline 86a152a37aca7b7478b9013e85b4cd27 https://www.encodeproject.org/files/ENCFF101XAM/@@download/ENCFF101XAM.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF128CTN bed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF717NOZ, ENCFF856WFI, ENCFF886TCK 2774513 ENCODE Processing Pipeline 5f070530c8816a6e288f4f8ef3574c7f https://www.encodeproject.org/files/ENCFF128CTN/@@download/ENCFF128CTN.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF555OID bed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF094SMC, ENCFF717NOZ, ENCFF856WFI, ENCFF886TCK 2238052 ENCODE Processing Pipeline eebe7e3452fe743ca365361852d1823e https://www.encodeproject.org/files/ENCFF555OID/@@download/ENCFF555OID.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF592ZIO bigBed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF101XAM 5482151 ENCODE Processing Pipeline 4e436f737ee9885aae520791fd021ed8 https://www.encodeproject.org/files/ENCFF592ZIO/@@download/ENCFF592ZIO.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF174KOJ bigBed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF128CTN 5738170 ENCODE Processing Pipeline dfca40ac2a81e87252669008f1082b7c https://www.encodeproject.org/files/ENCFF174KOJ/@@download/ENCFF174KOJ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF705SXI bigBed narrowPeak peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF555OID 4677803 ENCODE Processing Pipeline e4bfbbdbc15f923b3b2610a7d5882154 https://www.encodeproject.org/files/ENCFF705SXI/@@download/ENCFF705SXI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF344QEN bigWig signal p-value ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF094SMC, ENCFF856WFI, ENCFF886TCK 465632610 ENCODE Processing Pipeline 9474df032e37184a6d0a075744ad2453 https://www.encodeproject.org/files/ENCFF344QEN/@@download/ENCFF344QEN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF078EXL bigWig signal p-value ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF717NOZ, ENCFF856WFI, ENCFF886TCK 537793333 ENCODE Processing Pipeline 13fe58fb58dedaa012e33d8fb5c05af0 https://www.encodeproject.org/files/ENCFF078EXL/@@download/ENCFF078EXL.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF606TRX bigWig signal p-value ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF094SMC, ENCFF717NOZ, ENCFF856WFI, ENCFF886TCK 561366862 ENCODE Processing Pipeline 8bcffb4274bfd796a37c08ae004fdcfa https://www.encodeproject.org/files/ENCFF606TRX/@@download/ENCFF606TRX.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF321YUI bigWig fold change over control ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF094SMC, ENCFF856WFI, ENCFF886TCK 453035140 ENCODE Processing Pipeline 7371783c8bfc62651dc6d4832bb7dcba https://www.encodeproject.org/files/ENCFF321YUI/@@download/ENCFF321YUI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF111IST bigWig fold change over control ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF717NOZ, ENCFF856WFI, ENCFF886TCK 469923021 ENCODE Processing Pipeline 33679ef43a0ce59c6a4484924903fcd2 https://www.encodeproject.org/files/ENCFF111IST/@@download/ENCFF111IST.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF917SXQ bigWig fold change over control ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF094SMC, ENCFF717NOZ, ENCFF856WFI, ENCFF886TCK 742981018 ENCODE Processing Pipeline 69b4f01d7b449ef55f2d4ace681b8306 https://www.encodeproject.org/files/ENCFF917SXQ/@@download/ENCFF917SXQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF737FNO bed narrowPeak replicated peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF101XAM, ENCFF128CTN, ENCFF555OID 2213789 ENCODE Processing Pipeline 95382550e2f44c1292ff574fed29e264 https://www.encodeproject.org/files/ENCFF737FNO/@@download/ENCFF737FNO.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF497OUN bigBed narrowPeak replicated peaks ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF737FNO 3851011 ENCODE Processing Pipeline da8f6e64c7268c56481cdecc9cac64fb https://www.encodeproject.org/files/ENCFF497OUN/@@download/ENCFF497OUN.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF181ZNR fastq reads ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2166781661 Bing Ren, UCSD 62244d27076bb23b5e041daff2ea64d5 SRA:SRR3651914 https://www.encodeproject.org/files/ENCFF181ZNR/@@download/ENCFF181ZNR.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF361FYH fastq reads ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 34161050 Bing Ren, UCSD 72c053598049ba01aaf1f9ecfb6a6aaa SRA:SRR3651915 https://www.encodeproject.org/files/ENCFF361FYH/@@download/ENCFF361FYH.fastq.gz Illumina HiSeq 4000 /files/ENCFF078SMC/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF096KAU fastq reads ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2348282303 Bing Ren, UCSD 106a528c845b67d6717c831f13cd21f4 SRA:SRR3651916 https://www.encodeproject.org/files/ENCFF096KAU/@@download/ENCFF096KAU.fastq.gz Illumina HiSeq 4000 /files/ENCFF318AFJ/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF149CKY bam alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF096KAU, ENCFF806TVZ 2062680168 ENCODE Processing Pipeline e0cf74274bacfef6ad7c06a9f573402c https://www.encodeproject.org/files/ENCFF149CKY/@@download/ENCFF149CKY.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF880MLB bam alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF181ZNR, ENCFF361FYH, ENCFF806TVZ 1969299054 ENCODE Processing Pipeline f3bca108d7112364c4a2640c7b0b5842 https://www.encodeproject.org/files/ENCFF880MLB/@@download/ENCFF880MLB.bam mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF046STV bed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF149CKY, ENCFF670KZF, ENCFF880MLB, ENCFF950FXV 2800479 ENCODE Processing Pipeline 7d5addbe18fcad92c49be73bb0bf0dad https://www.encodeproject.org/files/ENCFF046STV/@@download/ENCFF046STV.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF859MOD bed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF880MLB, ENCFF950FXV 2858110 ENCODE Processing Pipeline 0eaa160e9d41c5a6a106276cdd25fadb https://www.encodeproject.org/files/ENCFF859MOD/@@download/ENCFF859MOD.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF735SBX bed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF149CKY, ENCFF670KZF 2655946 ENCODE Processing Pipeline e3550c3bc5e81f3a51866c3ceb03b12f https://www.encodeproject.org/files/ENCFF735SBX/@@download/ENCFF735SBX.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF864GAG bigBed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF859MOD 6241764 ENCODE Processing Pipeline 006da606434b829e660415ca2863d283 https://www.encodeproject.org/files/ENCFF864GAG/@@download/ENCFF864GAG.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF859GHL bigBed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF735SBX 5850067 ENCODE Processing Pipeline 024a788a7188d64f20be9a1355f46c84 https://www.encodeproject.org/files/ENCFF859GHL/@@download/ENCFF859GHL.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF642LRR bigWig signal p-value ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF880MLB, ENCFF950FXV 561761278 ENCODE Processing Pipeline 4b95c5bfebc12aa4fa5b21f96cf13e4b https://www.encodeproject.org/files/ENCFF642LRR/@@download/ENCFF642LRR.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF014DRS bigBed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046STV 6057688 ENCODE Processing Pipeline b72ec3afbc9a6678fa269ef9d5bb928b https://www.encodeproject.org/files/ENCFF014DRS/@@download/ENCFF014DRS.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF532BGL bigWig signal p-value ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF149CKY, ENCFF670KZF 849225624 ENCODE Processing Pipeline 9ebdcc5ef46e4165bb56a35efdd60654 https://www.encodeproject.org/files/ENCFF532BGL/@@download/ENCFF532BGL.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF226PRC bigWig signal p-value ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF149CKY, ENCFF670KZF, ENCFF880MLB, ENCFF950FXV 1156028055 ENCODE Processing Pipeline bc88c11236ee19dddccbe0cc1848011c https://www.encodeproject.org/files/ENCFF226PRC/@@download/ENCFF226PRC.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF508RJO bigWig fold change over control ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF880MLB, ENCFF950FXV 790009299 ENCODE Processing Pipeline e8cddfa4ed06dacc68dbd48d717f6955 https://www.encodeproject.org/files/ENCFF508RJO/@@download/ENCFF508RJO.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF060MUA bigWig fold change over control ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF149CKY, ENCFF670KZF 852333271 ENCODE Processing Pipeline 578e66cd002f6956eda917d9c8dc5ed2 https://www.encodeproject.org/files/ENCFF060MUA/@@download/ENCFF060MUA.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF286XDZ bigWig fold change over control ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF149CKY, ENCFF670KZF, ENCFF880MLB, ENCFF950FXV 1480830223 ENCODE Processing Pipeline d4eb81ca228a76c8501eaedadf788bd4 https://www.encodeproject.org/files/ENCFF286XDZ/@@download/ENCFF286XDZ.bigWig mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF203LHF bed narrowPeak replicated peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF046STV, ENCFF735SBX, ENCFF859MOD 2130461 ENCODE Processing Pipeline 140b83a6fe79c886fe20b59afc1bc122 https://www.encodeproject.org/files/ENCFF203LHF/@@download/ENCFF203LHF.bed.gz mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF633CNX bigBed narrowPeak replicated peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF203LHF 3729612 ENCODE Processing Pipeline ff373f155923e225db6f7c3ca64e0bc4 https://www.encodeproject.org/files/ENCFF633CNX/@@download/ENCFF633CNX.bigBed mm10-minimal archived mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF713DPW bam unfiltered alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF181ZNR, ENCFF361FYH 2915111152 ENCODE Processing Pipeline 9352739fbfddf8da805962b5069f030b https://www.encodeproject.org/files/ENCFF713DPW/@@download/ENCFF713DPW.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF707VAK bam unfiltered alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF096KAU 3090284186 ENCODE Processing Pipeline df33fea439b1c6becafefb15abe27d9f https://www.encodeproject.org/files/ENCFF707VAK/@@download/ENCFF707VAK.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF736TSN bam alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF181ZNR, ENCFF361FYH 1968816616 ENCODE Processing Pipeline 60fbed8f1008e3de26bef9316adb492d https://www.encodeproject.org/files/ENCFF736TSN/@@download/ENCFF736TSN.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF592DSG bam alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF096KAU 2062204946 ENCODE Processing Pipeline 6db5cd52b2c2daee1706266bada86ee1 https://www.encodeproject.org/files/ENCFF592DSG/@@download/ENCFF592DSG.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF315JHY bed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF736TSN 2858336 ENCODE Processing Pipeline 24e028eea2fa2b9141d6d21a87080ad1 https://www.encodeproject.org/files/ENCFF315JHY/@@download/ENCFF315JHY.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF669XPI bed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF592DSG, ENCFF741BBU 2668506 ENCODE Processing Pipeline 2fce5f72f38720caef9c4cb5f1bfe94b https://www.encodeproject.org/files/ENCFF669XPI/@@download/ENCFF669XPI.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF931GHW bed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF592DSG, ENCFF736TSN, ENCFF741BBU 2983788 ENCODE Processing Pipeline d9d25c68fc0a339c4cfe922504085a3f https://www.encodeproject.org/files/ENCFF931GHW/@@download/ENCFF931GHW.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF511AHG bigBed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF315JHY 6244128 ENCODE Processing Pipeline ed96c648f132ef218e3b2e7571f2d7c6 https://www.encodeproject.org/files/ENCFF511AHG/@@download/ENCFF511AHG.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF849XWH bigBed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF669XPI 5880238 ENCODE Processing Pipeline fa106884616e2a5c9bac527fadb67633 https://www.encodeproject.org/files/ENCFF849XWH/@@download/ENCFF849XWH.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF885EXB bigBed narrowPeak peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF931GHW 6496127 ENCODE Processing Pipeline f09327eac3f1b5e13117068d4bd5570f https://www.encodeproject.org/files/ENCFF885EXB/@@download/ENCFF885EXB.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF455QFV bigWig signal p-value ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF736TSN 705011320 ENCODE Processing Pipeline 7cabb646f1619b416478ffa9aaabe4b9 https://www.encodeproject.org/files/ENCFF455QFV/@@download/ENCFF455QFV.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF125GCI bigWig signal p-value ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF592DSG, ENCFF741BBU 638409164 ENCODE Processing Pipeline 2ecfc601a7e7e4b6b8e7449c94c43000 https://www.encodeproject.org/files/ENCFF125GCI/@@download/ENCFF125GCI.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF146RBL bigWig signal p-value ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF592DSG, ENCFF736TSN, ENCFF741BBU 1202709735 ENCODE Processing Pipeline ccaa9e37ee6e0c9a0924da965e7fa2b7 https://www.encodeproject.org/files/ENCFF146RBL/@@download/ENCFF146RBL.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF866LIT bigWig fold change over control ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF563KVK, ENCFF736TSN 789375017 ENCODE Processing Pipeline e54d66a0f3d804fe06e98ec12918183a https://www.encodeproject.org/files/ENCFF866LIT/@@download/ENCFF866LIT.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF492UIS bigWig fold change over control ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF592DSG, ENCFF741BBU 846743274 ENCODE Processing Pipeline aa6bdd71cc40fa9f993b4f6ede91c680 https://www.encodeproject.org/files/ENCFF492UIS/@@download/ENCFF492UIS.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF701NCZ bigWig fold change over control ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF563KVK, ENCFF592DSG, ENCFF736TSN, ENCFF741BBU 1524102773 ENCODE Processing Pipeline 6ffbd1be5779a9ff80270ee503cbf0c4 https://www.encodeproject.org/files/ENCFF701NCZ/@@download/ENCFF701NCZ.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF744VBB bed narrowPeak replicated peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF315JHY, ENCFF669XPI, ENCFF931GHW 2163634 ENCODE Processing Pipeline 3fd5cb8ff4a1fe986c08b01842617c71 https://www.encodeproject.org/files/ENCFF744VBB/@@download/ENCFF744VBB.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF282QLG bigBed narrowPeak replicated peaks ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF744VBB 3797947 ENCODE Processing Pipeline 0d3baff4de08fae6e06da956cb118e3f https://www.encodeproject.org/files/ENCFF282QLG/@@download/ENCFF282QLG.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF001KYO bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 732559423 Bing Ren, UCSD 6adc44a2bb742faed61ed95f044ca6db https://www.encodeproject.org/files/ENCFF001KYO/@@download/ENCFF001KYO.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KYQ bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KYZ 674456979 Bing Ren, UCSD ca0beede62c385fea5621370e8d5b6fa https://www.encodeproject.org/files/ENCFF001KYQ/@@download/ENCFF001KYQ.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KYR bigBed broadPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZO 1726111 Bing Ren, UCSD 558aa5b22c91e47c20e8323e7b6bd668 https://www.encodeproject.org/files/ENCFF001KYR/@@download/ENCFF001KYR.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KYU bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 1982808951 Bing Ren, UCSD 659c5a964f621063b051937ad57f1bce https://www.encodeproject.org/files/ENCFF001KYU/@@download/ENCFF001KYU.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KYV bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KZC 2047464569 Bing Ren, UCSD a46ed9fc32111471494615ded7fb550e https://www.encodeproject.org/files/ENCFF001KYV/@@download/ENCFF001KYV.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KYW bigWig signal ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KYQ, ENCFF001KYV 58354013 Bing Ren, UCSD 3ba3656a22faefc6d6fdd2d59902bd96 https://www.encodeproject.org/files/ENCFF001KYW/@@download/ENCFF001KYW.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KYZ fastq reads ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 30 single-ended 640987887 Bing Ren, UCSD dcebd97fc55716ed73695f03a5e8728d https://www.encodeproject.org/files/ENCFF001KYZ/@@download/ENCFF001KYZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF786ODW/ archived mild to moderate bottlenecking, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KZC fastq reads ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 30 single-ended 2027781102 Bing Ren, UCSD 6d96c9d875cf89e5e5cea3d5d3b94730 https://www.encodeproject.org/files/ENCFF001KZC/@@download/ENCFF001KZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KZD fastq reads ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 808222021 Bing Ren, UCSD 0a246bcc99684bf9433b252188bccdf6 https://www.encodeproject.org/files/ENCFF001KZD/@@download/ENCFF001KZD.fastq.gz Illumina HiSeq 2000 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, missing controlled_by, insufficient read length, control insufficient read depth ENCFF001KZJ fastq reads ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 2194076021 Bing Ren, UCSD 43a8a13774d2a1dccccec088f5a41c77 https://www.encodeproject.org/files/ENCFF001KZJ/@@download/ENCFF001KZJ.fastq.gz Illumina HiSeq 2000 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, missing controlled_by, insufficient read length, control insufficient read depth ENCFF001XZO bed broadPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KYQ, ENCFF001KYV 1170666 Bing Ren, UCSD c5fc3d6a3efadcc34a83147c07c26af0 https://www.encodeproject.org/files/ENCFF001XZO/@@download/ENCFF001XZO.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF322CVH bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KYZ, ENCFF806TVZ 419843745 ENCODE Processing Pipeline 137ccc1f23f724fbfdb0bb4354df5c66 https://www.encodeproject.org/files/ENCFF322CVH/@@download/ENCFF322CVH.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF042IXZ bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KZC, ENCFF806TVZ 979874480 ENCODE Processing Pipeline 9c14d9bd4bd3a30df8e3ce9e12ae1722 https://www.encodeproject.org/files/ENCFF042IXZ/@@download/ENCFF042IXZ.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF879GCS bam unfiltered alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KYZ, ENCFF018NEO 704002856 ENCODE Processing Pipeline 4ddcbd7a5bb532e395d24d0eb6a10b96 https://www.encodeproject.org/files/ENCFF879GCS/@@download/ENCFF879GCS.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF944UZU bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KYZ, ENCFF018NEO 419796387 ENCODE Processing Pipeline 7195efb7531820cee73d998896f07be4 https://www.encodeproject.org/files/ENCFF944UZU/@@download/ENCFF944UZU.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF947PZJ bam unfiltered alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KZC, ENCFF018NEO 2113154602 ENCODE Processing Pipeline 79e083d98f27ed6673a6170162401b03 https://www.encodeproject.org/files/ENCFF947PZJ/@@download/ENCFF947PZJ.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF131CHI bam alignments ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KZC, ENCFF018NEO 979773590 ENCODE Processing Pipeline 751eff5b2fb5f95b8fbdbe25e4000a13 https://www.encodeproject.org/files/ENCFF131CHI/@@download/ENCFF131CHI.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF141ORP bed narrowPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF944UZU 3327348 ENCODE Processing Pipeline 053e2df02de43138acd7c008f6164b2b https://www.encodeproject.org/files/ENCFF141ORP/@@download/ENCFF141ORP.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF095MJF bed narrowPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF131CHI, ENCFF132CII, ENCFF379WSY 4020674 ENCODE Processing Pipeline 018b68a6035e1a8f789ead99388a7cb9 https://www.encodeproject.org/files/ENCFF095MJF/@@download/ENCFF095MJF.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF978OVU bed narrowPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF131CHI, ENCFF132CII, ENCFF379WSY, ENCFF944UZU 3359122 ENCODE Processing Pipeline 9a5e92c032228c410ae09a7efe75c50a https://www.encodeproject.org/files/ENCFF978OVU/@@download/ENCFF978OVU.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF954DAQ bigBed narrowPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF141ORP 7952867 ENCODE Processing Pipeline 24b5e61d95cd3868bf43faabd4cce023 https://www.encodeproject.org/files/ENCFF954DAQ/@@download/ENCFF954DAQ.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF331SEG bigWig fold change over control ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF131CHI, ENCFF132CII, ENCFF379WSY, ENCFF944UZU 582901299 ENCODE Processing Pipeline 5927deca3d42a1d104ea173f1a6d6e56 https://www.encodeproject.org/files/ENCFF331SEG/@@download/ENCFF331SEG.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF145GNN bigBed narrowPeak replicated peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF386QNM 7424047 ENCODE Processing Pipeline 7db68778d8a15d0ffac0bb66406d41d2 https://www.encodeproject.org/files/ENCFF145GNN/@@download/ENCFF145GNN.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF789ZVH bigWig signal p-value ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF131CHI, ENCFF132CII, ENCFF379WSY, ENCFF944UZU 545873494 ENCODE Processing Pipeline 3f6ffe47e2adfa3ed4bef46b1b941dc2 https://www.encodeproject.org/files/ENCFF789ZVH/@@download/ENCFF789ZVH.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF551OIQ bigBed narrowPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF095MJF 11375745 ENCODE Processing Pipeline 137fc62915b22d78c5b4257980d77643 https://www.encodeproject.org/files/ENCFF551OIQ/@@download/ENCFF551OIQ.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF131FOW bigBed narrowPeak peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF978OVU 9605984 ENCODE Processing Pipeline 9f2d2ca5367df69bd392b475d7ed559f https://www.encodeproject.org/files/ENCFF131FOW/@@download/ENCFF131FOW.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF644NCU bigWig signal p-value ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF944UZU 356591272 ENCODE Processing Pipeline 20ccf2a814ffe8b67667eb99fb0169db https://www.encodeproject.org/files/ENCFF644NCU/@@download/ENCFF644NCU.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF138KDX bigWig fold change over control ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF131CHI, ENCFF132CII, ENCFF379WSY 451733016 ENCODE Processing Pipeline cf3f30089ffb0bfa671d67a6cf8c6c09 https://www.encodeproject.org/files/ENCFF138KDX/@@download/ENCFF138KDX.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF350MZY bigWig signal p-value ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF131CHI, ENCFF132CII, ENCFF379WSY 560243964 ENCODE Processing Pipeline 6c5aff5ebc42db2b3caff898420f708a https://www.encodeproject.org/files/ENCFF350MZY/@@download/ENCFF350MZY.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF006AHC bigWig fold change over control ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF944UZU 228609266 ENCODE Processing Pipeline aeb80fa7fd046873f5da930d494a4f2f https://www.encodeproject.org/files/ENCFF006AHC/@@download/ENCFF006AHC.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF386QNM bed narrowPeak replicated peaks ENCSR000CCZ ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF095MJF, ENCFF141ORP, ENCFF978OVU 3528629 ENCODE Processing Pipeline a807033817da49152933e14804741bef https://www.encodeproject.org/files/ENCFF386QNM/@@download/ENCFF386QNM.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths out of date analysis, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth ENCFF608EEV fastq reads ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1124008762 Bing Ren, UCSD 0726d0378c68a1fcfa0df630ed19b27c SRA:SRR3652340 https://www.encodeproject.org/files/ENCFF608EEV/@@download/ENCFF608EEV.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released ENCFF497ZGY fastq reads ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1201153037 Bing Ren, UCSD 5dcb2b01c7b1b6950c00abbfe867e4d8 SRA:SRR3652341 https://www.encodeproject.org/files/ENCFF497ZGY/@@download/ENCFF497ZGY.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released ENCFF491NUQ bam alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF497ZGY, ENCFF806TVZ 1114189213 ENCODE Processing Pipeline 1492485efb478ab3deaf7698f24f2222 https://www.encodeproject.org/files/ENCFF491NUQ/@@download/ENCFF491NUQ.bam mm10-minimal archived ENCFF534DDC bam alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF608EEV, ENCFF806TVZ 1070249697 ENCODE Processing Pipeline c1244d07fb97c196e2b7ff796ee94868 https://www.encodeproject.org/files/ENCFF534DDC/@@download/ENCFF534DDC.bam mm10-minimal archived ENCFF694GFZ bed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF534DDC, ENCFF986JLW 581394 ENCODE Processing Pipeline 403bb017cf286516c06cd7e45ddfce55 https://www.encodeproject.org/files/ENCFF694GFZ/@@download/ENCFF694GFZ.bed.gz mm10-minimal archived ENCFF856AGX bigBed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF694GFZ 1904509 ENCODE Processing Pipeline 303483c4b11dc7bfd988924237749aaf https://www.encodeproject.org/files/ENCFF856AGX/@@download/ENCFF856AGX.bigBed mm10-minimal archived ENCFF285KGZ bigBed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF355AHE 1907814 ENCODE Processing Pipeline f9b50aaee3d4811e32e0474d8096802b https://www.encodeproject.org/files/ENCFF285KGZ/@@download/ENCFF285KGZ.bigBed mm10-minimal archived ENCFF930FPT bigWig signal p-value ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF534DDC, ENCFF986JLW 538364734 ENCODE Processing Pipeline 378baa10b0b78338ad4a8634a4c763dc https://www.encodeproject.org/files/ENCFF930FPT/@@download/ENCFF930FPT.bigWig mm10-minimal archived ENCFF085BQN bed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF491NUQ, ENCFF534DDC, ENCFF986JLW 595837 ENCODE Processing Pipeline 274bea90bcbc86e4e71dffd32b212ec6 https://www.encodeproject.org/files/ENCFF085BQN/@@download/ENCFF085BQN.bed.gz mm10-minimal archived ENCFF355AHE bed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF491NUQ 585563 ENCODE Processing Pipeline 0054eecb83b80e699d54e369065906b4 https://www.encodeproject.org/files/ENCFF355AHE/@@download/ENCFF355AHE.bed.gz mm10-minimal archived ENCFF974HSX bigBed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF085BQN 1886855 ENCODE Processing Pipeline e152205672cce1977fba8eb0b3072928 https://www.encodeproject.org/files/ENCFF974HSX/@@download/ENCFF974HSX.bigBed mm10-minimal archived ENCFF248OIF bigWig signal p-value ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF491NUQ 607632786 ENCODE Processing Pipeline 334c97860972e410423ea8244912384d https://www.encodeproject.org/files/ENCFF248OIF/@@download/ENCFF248OIF.bigWig mm10-minimal archived ENCFF747WHC bigWig signal p-value ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF491NUQ, ENCFF534DDC, ENCFF986JLW 943970715 ENCODE Processing Pipeline 3cf19897c3cd9e9ff63d5f7923f5dbe1 https://www.encodeproject.org/files/ENCFF747WHC/@@download/ENCFF747WHC.bigWig mm10-minimal archived ENCFF203OSO bigWig fold change over control ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF534DDC, ENCFF986JLW 504171669 ENCODE Processing Pipeline 42a9c8b5bf181af82d2f6e7473cc65a5 https://www.encodeproject.org/files/ENCFF203OSO/@@download/ENCFF203OSO.bigWig mm10-minimal archived ENCFF730NGG bigWig fold change over control ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF491NUQ 533116200 ENCODE Processing Pipeline 0e5d09c8435dfa589dc475a0e88cd12c https://www.encodeproject.org/files/ENCFF730NGG/@@download/ENCFF730NGG.bigWig mm10-minimal archived ENCFF134HRA bigWig fold change over control ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF491NUQ, ENCFF534DDC, ENCFF986JLW 1052440771 ENCODE Processing Pipeline 861fd279f15eaf39593a825eee359a63 https://www.encodeproject.org/files/ENCFF134HRA/@@download/ENCFF134HRA.bigWig mm10-minimal archived ENCFF458JUO bed narrowPeak replicated peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF085BQN, ENCFF355AHE, ENCFF694GFZ 564898 ENCODE Processing Pipeline fa1b9290db04ede159de108d6df15d41 https://www.encodeproject.org/files/ENCFF458JUO/@@download/ENCFF458JUO.bed.gz mm10-minimal archived ENCFF279PBU bigBed narrowPeak replicated peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF458JUO 1439189 ENCODE Processing Pipeline dcc3832aa0e009c5ad09ece3ed6efcd3 https://www.encodeproject.org/files/ENCFF279PBU/@@download/ENCFF279PBU.bigBed mm10-minimal archived ENCFF070RMH bam unfiltered alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF497ZGY 1601454595 ENCODE Processing Pipeline e968e6375025998cc39bf6789f2bd922 https://www.encodeproject.org/files/ENCFF070RMH/@@download/ENCFF070RMH.bam mm10 released ENCFF964XJY bam unfiltered alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF608EEV 1518364917 ENCODE Processing Pipeline 46d67cdf90f782dd117487c760781c9a https://www.encodeproject.org/files/ENCFF964XJY/@@download/ENCFF964XJY.bam mm10 released ENCFF799BRW bam alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF497ZGY 1113808698 ENCODE Processing Pipeline 06fba415fa34d0e819294b7081c231f9 https://www.encodeproject.org/files/ENCFF799BRW/@@download/ENCFF799BRW.bam mm10 released ENCFF968WKI bam alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF608EEV 1069891902 ENCODE Processing Pipeline 2fcca401fb3e4b5a428dff0751ed3003 https://www.encodeproject.org/files/ENCFF968WKI/@@download/ENCFF968WKI.bam mm10 released ENCFF901PTU bed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF968WKI, ENCFF970FNZ 573976 ENCODE Processing Pipeline c64a2158bec82b9b200bc8e63402e205 https://www.encodeproject.org/files/ENCFF901PTU/@@download/ENCFF901PTU.bed.gz mm10 released ENCFF684VFP bed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF614XRG, ENCFF799BRW 583642 ENCODE Processing Pipeline d5e52d41326206b6a61b2a99fbb63547 https://www.encodeproject.org/files/ENCFF684VFP/@@download/ENCFF684VFP.bed.gz mm10 released ENCFF689RVJ bed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF614XRG, ENCFF799BRW, ENCFF968WKI, ENCFF970FNZ 604604 ENCODE Processing Pipeline ebf3d79a7257721535e2608966899148 https://www.encodeproject.org/files/ENCFF689RVJ/@@download/ENCFF689RVJ.bed.gz mm10 released ENCFF160TBP bigBed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF901PTU 1881457 ENCODE Processing Pipeline c488deefa6c7b93e694c174e62eefb00 https://www.encodeproject.org/files/ENCFF160TBP/@@download/ENCFF160TBP.bigBed mm10 released ENCFF375OAI bigBed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF684VFP 1907744 ENCODE Processing Pipeline 1b0422861afa0b8098d93a0c472e8d2f https://www.encodeproject.org/files/ENCFF375OAI/@@download/ENCFF375OAI.bigBed mm10 released ENCFF127CFG bigBed narrowPeak peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF689RVJ 1914717 ENCODE Processing Pipeline d0209846422e0210d55f96923f6f0633 https://www.encodeproject.org/files/ENCFF127CFG/@@download/ENCFF127CFG.bigBed mm10 released ENCFF745SGU bigWig signal p-value ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF968WKI, ENCFF970FNZ 447942513 ENCODE Processing Pipeline ebf76e2b4589dd4d7f8e369572d9a221 https://www.encodeproject.org/files/ENCFF745SGU/@@download/ENCFF745SGU.bigWig mm10 released ENCFF316YDZ bigWig signal p-value ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF614XRG, ENCFF799BRW 507180453 ENCODE Processing Pipeline ad74947bb25b3cad1f0195cd566f7460 https://www.encodeproject.org/files/ENCFF316YDZ/@@download/ENCFF316YDZ.bigWig mm10 released ENCFF039WSC bigWig signal p-value ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF614XRG, ENCFF799BRW, ENCFF968WKI, ENCFF970FNZ 892313748 ENCODE Processing Pipeline 5356ba6674e5422cdb92f50dd8f4a143 https://www.encodeproject.org/files/ENCFF039WSC/@@download/ENCFF039WSC.bigWig mm10 released ENCFF862ZBL bigWig fold change over control ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF968WKI, ENCFF970FNZ 497780851 ENCODE Processing Pipeline 45802cf9a427f8b20e530b821fbf6a73 https://www.encodeproject.org/files/ENCFF862ZBL/@@download/ENCFF862ZBL.bigWig mm10 released ENCFF228QDZ bigWig fold change over control ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF614XRG, ENCFF799BRW 551118109 ENCODE Processing Pipeline 3f86473abb94301444d3f764aeb4ddc6 https://www.encodeproject.org/files/ENCFF228QDZ/@@download/ENCFF228QDZ.bigWig mm10 released ENCFF552KFS bigWig fold change over control ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF614XRG, ENCFF799BRW, ENCFF968WKI, ENCFF970FNZ 1071669373 ENCODE Processing Pipeline 3f2624e1ba530326b9a2cc917bc52e2b https://www.encodeproject.org/files/ENCFF552KFS/@@download/ENCFF552KFS.bigWig mm10 released ENCFF306PYA bed narrowPeak replicated peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF684VFP, ENCFF689RVJ, ENCFF901PTU 575321 ENCODE Processing Pipeline cde9390114550887152ed4340e682331 https://www.encodeproject.org/files/ENCFF306PYA/@@download/ENCFF306PYA.bed.gz mm10 released ENCFF747KXT bigBed narrowPeak replicated peaks ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF306PYA 1455204 ENCODE Processing Pipeline f87b256163e7285dfb08c70a2926d82f https://www.encodeproject.org/files/ENCFF747KXT/@@download/ENCFF747KXT.bigBed mm10 released ENCFF052ULD fastq reads ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1396872153 Bing Ren, UCSD f5ca26fdb28566bd38c199e2eb126b2a SRA:SRR3653053 https://www.encodeproject.org/files/ENCFF052ULD/@@download/ENCFF052ULD.fastq.gz Illumina HiSeq 2500 /files/ENCFF954VRX/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF741LAZ fastq reads ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 1124128983 Bing Ren, UCSD bc1e2d35d755ddfb6ed233e7858348cd SRA:SRR3653054 https://www.encodeproject.org/files/ENCFF741LAZ/@@download/ENCFF741LAZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF954VRX/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF585PDV fastq reads ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2785437325 Bing Ren, UCSD 481071dae1faa3a3b4854db7bd9cba37 SRA:SRR3653050 https://www.encodeproject.org/files/ENCFF585PDV/@@download/ENCFF585PDV.fastq.gz Illumina HiSeq 2000 /files/ENCFF514LBY/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF276BKE fastq reads ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 254278454 Bing Ren, UCSD 5647519e7a7357eea24ccff5e5b76aae SRA:SRR3653051 https://www.encodeproject.org/files/ENCFF276BKE/@@download/ENCFF276BKE.fastq.gz Illumina HiSeq 2500 /files/ENCFF514LBY/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF420TTS fastq reads ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2597928694 Bing Ren, UCSD 18e8893089dac42f9ac587f5f7682614 SRA:SRR3653055 https://www.encodeproject.org/files/ENCFF420TTS/@@download/ENCFF420TTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF954VRX/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF840ENO fastq reads ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1482710196 Bing Ren, UCSD f062f9ef50d73a639d14cd689f3188ec SRA:SRR3653052 https://www.encodeproject.org/files/ENCFF840ENO/@@download/ENCFF840ENO.fastq.gz Illumina HiSeq 2500 /files/ENCFF514LBY/ released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF216RNN bam alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF052ULD, ENCFF420TTS, ENCFF741LAZ, ENCFF806TVZ 3415338446 ENCODE Processing Pipeline 69d7d3ef7eb7928f9db6f5778d3ae7ec https://www.encodeproject.org/files/ENCFF216RNN/@@download/ENCFF216RNN.bam mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF010QFC bam alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF276BKE, ENCFF585PDV, ENCFF806TVZ, ENCFF840ENO 3053572968 ENCODE Processing Pipeline da74c6806e065ac634488cb173e8d8f6 https://www.encodeproject.org/files/ENCFF010QFC/@@download/ENCFF010QFC.bam mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF933UHP bigBed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF331BZO 6077520 ENCODE Processing Pipeline d7f0596718828bc4b43e45f4abc51432 https://www.encodeproject.org/files/ENCFF933UHP/@@download/ENCFF933UHP.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF220YCB bigBed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF783KEA 5239448 ENCODE Processing Pipeline 2b742e349c68c8d7f02f2f08824372ec https://www.encodeproject.org/files/ENCFF220YCB/@@download/ENCFF220YCB.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF378QCZ bed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF010QFC, ENCFF082TGD, ENCFF314ZXJ 2546232 ENCODE Processing Pipeline 1d1c87b0b8894cef76fa089fb6cb068c https://www.encodeproject.org/files/ENCFF378QCZ/@@download/ENCFF378QCZ.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF783KEA bed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF010QFC, ENCFF082TGD, ENCFF216RNN, ENCFF314ZXJ 2321462 ENCODE Processing Pipeline 24c891266714bc16fc33e24c9db34875 https://www.encodeproject.org/files/ENCFF783KEA/@@download/ENCFF783KEA.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF504LBR bigBed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF378QCZ 5879181 ENCODE Processing Pipeline 3e45392154c6846a1a33b7815e92c082 https://www.encodeproject.org/files/ENCFF504LBR/@@download/ENCFF504LBR.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF331BZO bed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF216RNN, ENCFF314ZXJ 2644278 ENCODE Processing Pipeline 3d34e24ff8e2ff6e040439bd4ad93305 https://www.encodeproject.org/files/ENCFF331BZO/@@download/ENCFF331BZO.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF699NFK bigWig signal p-value ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF216RNN, ENCFF314ZXJ 1033845342 ENCODE Processing Pipeline 7038427ad1cc62bd409ae22009626e2e https://www.encodeproject.org/files/ENCFF699NFK/@@download/ENCFF699NFK.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF991DLH bigWig signal p-value ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF010QFC, ENCFF082TGD, ENCFF314ZXJ 1139856861 ENCODE Processing Pipeline 4e6b14adf96eedeb0b011b67eb8d9456 https://www.encodeproject.org/files/ENCFF991DLH/@@download/ENCFF991DLH.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF321KBC bigWig signal p-value ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF010QFC, ENCFF082TGD, ENCFF216RNN, ENCFF314ZXJ 1373829323 ENCODE Processing Pipeline fcf537e922c7e747640ba42fe5df166e https://www.encodeproject.org/files/ENCFF321KBC/@@download/ENCFF321KBC.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF842UMB bigWig fold change over control ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF082TGD, ENCFF216RNN, ENCFF314ZXJ 1214878966 ENCODE Processing Pipeline abc6135a62d160bb619ec11c2c42aafa https://www.encodeproject.org/files/ENCFF842UMB/@@download/ENCFF842UMB.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF068UBD bigWig fold change over control ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF010QFC, ENCFF082TGD, ENCFF314ZXJ 1150343262 ENCODE Processing Pipeline a1ee6358a499352f62932bf56ad2e502 https://www.encodeproject.org/files/ENCFF068UBD/@@download/ENCFF068UBD.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF729RNC bigWig fold change over control ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF010QFC, ENCFF082TGD, ENCFF216RNN, ENCFF314ZXJ 1721093149 ENCODE Processing Pipeline ed28e62c13a3f82dec991bdb85cc01f8 https://www.encodeproject.org/files/ENCFF729RNC/@@download/ENCFF729RNC.bigWig mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF045VZZ bed narrowPeak replicated peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF331BZO, ENCFF378QCZ, ENCFF783KEA 2304024 ENCODE Processing Pipeline 9681a2fa6fcdcc9eb154607c8049b9d2 https://www.encodeproject.org/files/ENCFF045VZZ/@@download/ENCFF045VZZ.bed.gz mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF309LTQ bigBed narrowPeak replicated peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF045VZZ 4135648 ENCODE Processing Pipeline 1f55823588ee5f20800f60ca7286efaa https://www.encodeproject.org/files/ENCFF309LTQ/@@download/ENCFF309LTQ.bigBed mm10-minimal archived inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF602FBZ bam unfiltered alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF052ULD, ENCFF420TTS, ENCFF741LAZ 6046066996 ENCODE Processing Pipeline a5428958fca97d43c5fab6a4f3551220 https://www.encodeproject.org/files/ENCFF602FBZ/@@download/ENCFF602FBZ.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF172TXG bam unfiltered alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF276BKE, ENCFF585PDV, ENCFF840ENO 5371364378 ENCODE Processing Pipeline cdbda637411bf264db718ad5506ecd26 https://www.encodeproject.org/files/ENCFF172TXG/@@download/ENCFF172TXG.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF789AII bam alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF276BKE, ENCFF585PDV, ENCFF840ENO 3052988222 ENCODE Processing Pipeline c54c0e6ffa7c1f99dd834fd29a994c0f https://www.encodeproject.org/files/ENCFF789AII/@@download/ENCFF789AII.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF287VDV bam alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF052ULD, ENCFF420TTS, ENCFF741LAZ 3414660677 ENCODE Processing Pipeline ace7ffc80fc08f7b9674fc659df02241 https://www.encodeproject.org/files/ENCFF287VDV/@@download/ENCFF287VDV.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF311IGY bed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF287VDV, ENCFF615JIE 2678023 ENCODE Processing Pipeline 7689fa3a590530affe12da35a30af3b5 https://www.encodeproject.org/files/ENCFF311IGY/@@download/ENCFF311IGY.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF361OPI bed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF789AII 2062719 ENCODE Processing Pipeline c7ae96e0f6b0b287d9747ed8cf49a8fd https://www.encodeproject.org/files/ENCFF361OPI/@@download/ENCFF361OPI.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF703FLK bigBed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF361OPI 4799750 ENCODE Processing Pipeline 8c5cf8ad8578ad44a11538d7af69c590 https://www.encodeproject.org/files/ENCFF703FLK/@@download/ENCFF703FLK.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF263VLS bigBed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF311IGY 6171639 ENCODE Processing Pipeline 0d61ffbef985926ac6531f34b95e45fb https://www.encodeproject.org/files/ENCFF263VLS/@@download/ENCFF263VLS.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF893LGP bed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF287VDV, ENCFF615JIE, ENCFF789AII 2580265 ENCODE Processing Pipeline 877e6a18251bf89c65766ae54390c685 https://www.encodeproject.org/files/ENCFF893LGP/@@download/ENCFF893LGP.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF385QII bigBed narrowPeak peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF893LGP 5826802 ENCODE Processing Pipeline a49235f33b329df76ae4422053409c45 https://www.encodeproject.org/files/ENCFF385QII/@@download/ENCFF385QII.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF007RFO bigWig signal p-value ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF287VDV, ENCFF615JIE 1234487339 ENCODE Processing Pipeline 695f003414288a8cc7bec80e24d71f73 https://www.encodeproject.org/files/ENCFF007RFO/@@download/ENCFF007RFO.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF199GYC bigWig signal p-value ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF789AII 868555743 ENCODE Processing Pipeline 7063eebce71f9397f304efdc0d004654 https://www.encodeproject.org/files/ENCFF199GYC/@@download/ENCFF199GYC.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF268COO bigWig signal p-value ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF287VDV, ENCFF615JIE, ENCFF789AII 1591674760 ENCODE Processing Pipeline ddbe1203e35eace0ab3c2b26013e5f59 https://www.encodeproject.org/files/ENCFF268COO/@@download/ENCFF268COO.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF018NGL bigWig fold change over control ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF164ZUK, ENCFF287VDV, ENCFF615JIE 1309830863 ENCODE Processing Pipeline 142b55fd32fe1d37c8c76559dcb0586d https://www.encodeproject.org/files/ENCFF018NGL/@@download/ENCFF018NGL.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF364SIT bigWig fold change over control ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF164ZUK, ENCFF789AII 939208814 ENCODE Processing Pipeline b052b92b3f1f03904d4921832cc06dce https://www.encodeproject.org/files/ENCFF364SIT/@@download/ENCFF364SIT.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF032RGE bigWig fold change over control ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF164ZUK, ENCFF287VDV, ENCFF615JIE, ENCFF789AII 1787485222 ENCODE Processing Pipeline a425ff8f008024d136b54eca71bee400 https://www.encodeproject.org/files/ENCFF032RGE/@@download/ENCFF032RGE.bigWig mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF686YHI bed narrowPeak replicated peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF311IGY, ENCFF361OPI, ENCFF893LGP 2261958 ENCODE Processing Pipeline 55f19138881e1f2492f857e1a6e12029 https://www.encodeproject.org/files/ENCFF686YHI/@@download/ENCFF686YHI.bed.gz mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF869EUF bigBed narrowPeak replicated peaks ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF686YHI 4041197 ENCODE Processing Pipeline b4f9449513ed248716d0823c95e2d12e https://www.encodeproject.org/files/ENCFF869EUF/@@download/ENCFF869EUF.bigBed mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF002ANU fastq reads ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1523751005 Bing Ren, UCSD d82b76850abb58c51bd3a6dfe342578a SRA:SRR3651918 https://www.encodeproject.org/files/ENCFF002ANU/@@download/ENCFF002ANU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APV/ released low read length, mild to moderate bottlenecking, inconsistent control read length ENCFF002ANX fastq reads ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1580259707 Bing Ren, UCSD 5780ea5e0bdd01519e0345347ff9e95f SRA:SRR3651917 https://www.encodeproject.org/files/ENCFF002ANX/@@download/ENCFF002ANX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APU/ released low read length, mild to moderate bottlenecking ENCFF143YYQ bam alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANX, ENCFF806TVZ 1077182428 ENCODE Processing Pipeline 6eeeb8627084cc3a939ccd42b3f3b793 https://www.encodeproject.org/files/ENCFF143YYQ/@@download/ENCFF143YYQ.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF776EUP bam alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANU, ENCFF806TVZ 1158296170 ENCODE Processing Pipeline 750e87cb39b1e625e743f388ce39bdf2 https://www.encodeproject.org/files/ENCFF776EUP/@@download/ENCFF776EUP.bam mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF503KCA bed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF143YYQ, ENCFF228INH, ENCFF776EUP 1344282 ENCODE Processing Pipeline 96a4ec1c352fbe04450d8a2e7b6e0229 https://www.encodeproject.org/files/ENCFF503KCA/@@download/ENCFF503KCA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF089HZH bed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF776EUP 1099803 ENCODE Processing Pipeline 1288e1f5fd9673766d3d3889c44342bc https://www.encodeproject.org/files/ENCFF089HZH/@@download/ENCFF089HZH.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF584VGM bed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF143YYQ, ENCFF228INH 1453520 ENCODE Processing Pipeline 6a88a3ad92b5494daba4547a80b9efa4 https://www.encodeproject.org/files/ENCFF584VGM/@@download/ENCFF584VGM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF321XMK bigBed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF089HZH 3318038 ENCODE Processing Pipeline bc99b9cad020ab2eff374459330b3476 https://www.encodeproject.org/files/ENCFF321XMK/@@download/ENCFF321XMK.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF818ETF bigBed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF584VGM 4125155 ENCODE Processing Pipeline bef86013ed90cedde21a1de8867a7a0c https://www.encodeproject.org/files/ENCFF818ETF/@@download/ENCFF818ETF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF691NEM bigBed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF503KCA 3837251 ENCODE Processing Pipeline fdda2f63662dcd7dcfa472dd55dc57aa https://www.encodeproject.org/files/ENCFF691NEM/@@download/ENCFF691NEM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF560NQX bigWig signal p-value ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF776EUP 583521049 ENCODE Processing Pipeline 6cf890ff2b297a17a25dd4dc215135db https://www.encodeproject.org/files/ENCFF560NQX/@@download/ENCFF560NQX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF183JRO bigWig signal p-value ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF143YYQ, ENCFF228INH 456421211 ENCODE Processing Pipeline 9a5181c2feb469d096c979b9340d5902 https://www.encodeproject.org/files/ENCFF183JRO/@@download/ENCFF183JRO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF481UDY bigWig signal p-value ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF143YYQ, ENCFF228INH, ENCFF776EUP 781076841 ENCODE Processing Pipeline 8c5bd2cda0888c76048eb47c6e335256 https://www.encodeproject.org/files/ENCFF481UDY/@@download/ENCFF481UDY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF600IEB bigWig fold change over control ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF776EUP 579620498 ENCODE Processing Pipeline 5d1b3580c9147c56647736460d0e5f26 https://www.encodeproject.org/files/ENCFF600IEB/@@download/ENCFF600IEB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF173MIB bigWig fold change over control ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF143YYQ, ENCFF228INH 493854311 ENCODE Processing Pipeline bf8deea1d184dcc317e4e8da2315c42e https://www.encodeproject.org/files/ENCFF173MIB/@@download/ENCFF173MIB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF749TBL bed narrowPeak replicated peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF089HZH, ENCFF503KCA, ENCFF584VGM 1185956 ENCODE Processing Pipeline a24772c5338734f1474a5d5045c3a7a9 https://www.encodeproject.org/files/ENCFF749TBL/@@download/ENCFF749TBL.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF597UHN bigWig fold change over control ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF143YYQ, ENCFF228INH, ENCFF776EUP 835749623 ENCODE Processing Pipeline e472f6a01b22b0909ce7e1133a4f6c74 https://www.encodeproject.org/files/ENCFF597UHN/@@download/ENCFF597UHN.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF683YYU bigBed narrowPeak replicated peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF749TBL 2641747 ENCODE Processing Pipeline 11b9f5928d263e72a522eff301d11202 https://www.encodeproject.org/files/ENCFF683YYU/@@download/ENCFF683YYU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking ENCFF883HVL bam unfiltered alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANX, ENCFF018NEO 1631758555 ENCODE Processing Pipeline e68a45b61989e16e3f9a8912a9e6f5e3 https://www.encodeproject.org/files/ENCFF883HVL/@@download/ENCFF883HVL.bam mm10 released low read length, mild to moderate bottlenecking ENCFF092RJG bam unfiltered alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANU, ENCFF018NEO 1638311066 ENCODE Processing Pipeline b1936a5f9c4d293c3d727598fd17682c https://www.encodeproject.org/files/ENCFF092RJG/@@download/ENCFF092RJG.bam mm10 released low read length, mild to moderate bottlenecking ENCFF418HGV bam alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANX, ENCFF018NEO 1077024168 ENCODE Processing Pipeline b5c9daf5835671a10d466ed08f8003a3 https://www.encodeproject.org/files/ENCFF418HGV/@@download/ENCFF418HGV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF079VRL bam alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANU, ENCFF018NEO 1158034625 ENCODE Processing Pipeline 74d3299ddcacab6bca092c3177800e2d https://www.encodeproject.org/files/ENCFF079VRL/@@download/ENCFF079VRL.bam mm10 released low read length, mild to moderate bottlenecking ENCFF758HEE bed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF418HGV 1044672 ENCODE Processing Pipeline 7559618ffa8357dec03242c8ab8d3030 https://www.encodeproject.org/files/ENCFF758HEE/@@download/ENCFF758HEE.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF696BRU bigBed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF758HEE 3077543 ENCODE Processing Pipeline 43a560737a2b228e4996095ca4f4b29a https://www.encodeproject.org/files/ENCFF696BRU/@@download/ENCFF696BRU.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF420RWL bigWig signal p-value ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF418HGV 419701448 ENCODE Processing Pipeline c643b8cb1b1d0b50baf26bd9e1134b0c https://www.encodeproject.org/files/ENCFF420RWL/@@download/ENCFF420RWL.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF079JBA bigWig fold change over control ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF418HGV 421832593 ENCODE Processing Pipeline 72d374f6efba4a06a1f9cc37545c1fb3 https://www.encodeproject.org/files/ENCFF079JBA/@@download/ENCFF079JBA.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF508JPW bigBed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF493DLP 3211668 ENCODE Processing Pipeline 86496921c305bc589b499d3d62a8bf39 https://www.encodeproject.org/files/ENCFF508JPW/@@download/ENCFF508JPW.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF613NNU bigBed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF345FDX 3683529 ENCODE Processing Pipeline 84a20a592dde4443f6da1c1c729abe4d https://www.encodeproject.org/files/ENCFF613NNU/@@download/ENCFF613NNU.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF345FDX bed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF079VRL, ENCFF396CVK, ENCFF418HGV, ENCFF506NSJ 1280303 ENCODE Processing Pipeline 289a5774c9c80a4a434984e95d29485a https://www.encodeproject.org/files/ENCFF345FDX/@@download/ENCFF345FDX.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF493DLP bed narrowPeak peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF079VRL, ENCFF396CVK, ENCFF506NSJ 1057003 ENCODE Processing Pipeline 6793c8a39d490bd608a316f1eef656a7 https://www.encodeproject.org/files/ENCFF493DLP/@@download/ENCFF493DLP.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF046BNE bigWig fold change over control ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF079VRL, ENCFF396CVK, ENCFF506NSJ 584375886 ENCODE Processing Pipeline aafde2a6879bc522b311698d55e8108d https://www.encodeproject.org/files/ENCFF046BNE/@@download/ENCFF046BNE.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF761XIB bigWig signal p-value ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF079VRL, ENCFF396CVK, ENCFF506NSJ 593778002 ENCODE Processing Pipeline 3517939bc1303d3564edc20376bd55ad https://www.encodeproject.org/files/ENCFF761XIB/@@download/ENCFF761XIB.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF934ZCI bigWig signal p-value ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF079VRL, ENCFF396CVK, ENCFF418HGV, ENCFF506NSJ 777915869 ENCODE Processing Pipeline aa342d7684fe3c1026283e7dfcd2bdf3 https://www.encodeproject.org/files/ENCFF934ZCI/@@download/ENCFF934ZCI.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF770FZI bigWig fold change over control ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF079VRL, ENCFF396CVK, ENCFF418HGV, ENCFF506NSJ 848813646 ENCODE Processing Pipeline 2643c997e5e11327549a029e18a5cd8a https://www.encodeproject.org/files/ENCFF770FZI/@@download/ENCFF770FZI.bigWig mm10 released low read length, mild to moderate bottlenecking ENCFF776GNU bigBed narrowPeak replicated peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190QIL 2447495 ENCODE Processing Pipeline d1687bf52d442c4f4688b125eef45ab8 https://www.encodeproject.org/files/ENCFF776GNU/@@download/ENCFF776GNU.bigBed mm10 released low read length, mild to moderate bottlenecking ENCFF190QIL bed narrowPeak replicated peaks ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF345FDX, ENCFF493DLP, ENCFF758HEE 1096297 ENCODE Processing Pipeline fe19120d23ebb9a4a47ec949fe444741 https://www.encodeproject.org/files/ENCFF190QIL/@@download/ENCFF190QIL.bed.gz mm10 released low read length, mild to moderate bottlenecking ENCFF920BEF fastq reads ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 2585066128 Christina Leslie, MSKCC ca57dc372f35b9f4e9e3b3357e9bd0df https://www.encodeproject.org/files/ENCFF920BEF/@@download/ENCFF920BEF.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, missing donor missing controlled_by, unreplicated experiment ENCFF535VAN fastq reads ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 2906303682 Christina Leslie, MSKCC a3ad532621e7975dccfa61a4fe221d78 https://www.encodeproject.org/files/ENCFF535VAN/@@download/ENCFF535VAN.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, missing donor missing controlled_by, unreplicated experiment ENCFF746PNY bam alignments ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF535VAN 2121873502 Christina Leslie, MSKCC 8d8e6b84e9b8302e2bc7090486fa3040 https://www.encodeproject.org/files/ENCFF746PNY/@@download/ENCFF746PNY.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF379RMJ bam alignments ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF920BEF 2164120947 Christina Leslie, MSKCC 43b84be44cef090cd6cae64d01f66888 https://www.encodeproject.org/files/ENCFF379RMJ/@@download/ENCFF379RMJ.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF224SMO tsv enrichment ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF379RMJ, ENCFF608UQC 267885 Christina Leslie, MSKCC 875fcb5c73f84f7c84106fd55288cea1 https://www.encodeproject.org/files/ENCFF224SMO/@@download/ENCFF224SMO.tsv mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF698CKJ tsv enrichment ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF608UQC, ENCFF746PNY 268236 Christina Leslie, MSKCC 6b77ab40856f0854e7eb1784d81a3050 https://www.encodeproject.org/files/ENCFF698CKJ/@@download/ENCFF698CKJ.tsv mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF001ZOT fastq reads ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 1 48 single-ended 1758532892 Ross Hardison, PennState c7c052f762f317e2286a9b3755d6f796 https://www.encodeproject.org/files/ENCFF001ZOT/@@download/ENCFF001ZOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, mild to moderate bottlenecking, inconsistent control read length experiment not submitted to GEO ENCFF001ZOU bigWig signal ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 1 4276004096 Ross Hardison, PennState 63570b329fd7de50781ce5b65366532c https://www.encodeproject.org/files/ENCFF001ZOU/@@download/ENCFF001ZOU.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from ENCFF001ZPA fastq reads ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 1 48 single-ended 1554502099 Ross Hardison, PennState e16b2700289184f6fb34c13db5f4b361 https://www.encodeproject.org/files/ENCFF001ZPA/@@download/ENCFF001ZPA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, mild to moderate bottlenecking, inconsistent control read length experiment not submitted to GEO ENCFF001ZPB bigWig signal ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 1 4089882725 Ross Hardison, PennState 144c65e72aaeee53678f55b384659e35 https://www.encodeproject.org/files/ENCFF001ZPB/@@download/ENCFF001ZPB.bigWig mm9 released low read length, mild to moderate bottlenecking missing derived_from, experiment not submitted to GEO ENCFF001ZPI bam alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 ENCFF001ZOT 1901345920 Ross Hardison, PennState 231440777c8eae101426146a4a86768e https://www.encodeproject.org/files/ENCFF001ZPI/@@download/ENCFF001ZPI.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001ZPJ bam alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 ENCFF001ZPA 1688748045 Ross Hardison, PennState 34d1829cd2aabd6084df62695a68fbcc https://www.encodeproject.org/files/ENCFF001ZPJ/@@download/ENCFF001ZPJ.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001ZPK bigBed broadPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 1 2981057 Ross Hardison, PennState 64e8ce3a4ebfc2a29ef55e8a9f4cf2cf https://www.encodeproject.org/files/ENCFF001ZPK/@@download/ENCFF001ZPK.bigBed mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from ENCFF001ZPL bigBed broadPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 1 2695970 Ross Hardison, PennState d9c978883a74e7b5a85e6f1f486d2b01 https://www.encodeproject.org/files/ENCFF001ZPL/@@download/ENCFF001ZPL.bigBed mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from ENCFF566QQW bam unfiltered alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 48 ENCFF001ZOT, ENCFF018NEO 2067788123 ENCODE Processing Pipeline 5a49a709bdbbc496526431b1ac26fbc8 https://www.encodeproject.org/files/ENCFF566QQW/@@download/ENCFF566QQW.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF364MPM bam unfiltered alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 48 ENCFF001ZPA, ENCFF018NEO 1839713518 ENCODE Processing Pipeline c6b8ddfbdd62cc47e115ea2490e9c4b7 https://www.encodeproject.org/files/ENCFF364MPM/@@download/ENCFF364MPM.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001ZPH bigWig signal ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 5283340196 Ross Hardison, PennState ec9d0599da5858d75cc7efef4c456630 https://www.encodeproject.org/files/ENCFF001ZPH/@@download/ENCFF001ZPH.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from ENCFF001ZPM bigBed broadPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 3167723 Ross Hardison, PennState 0177dc5d461f2974a56e339e701c76cb https://www.encodeproject.org/files/ENCFF001ZPM/@@download/ENCFF001ZPM.bigBed mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from ENCFF001ZPN bam alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 3477726910 Ross Hardison, PennState ac26952075b28dcbbd42ccfcaed880dd https://www.encodeproject.org/files/ENCFF001ZPN/@@download/ENCFF001ZPN.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from ENCFF839PKG bed broadPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 1 ENCFF001ZPK 1652779 ENCODE Consortium 5d140b1e9b2f225aeeab64ccbd034d8b https://www.encodeproject.org/files/ENCFF839PKG/@@download/ENCFF839PKG.bed.gz mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF196KJS bed broadPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 1 ENCFF001ZPL 1488085 ENCODE Consortium c6eb656b4be36c7d770224636b9d383c https://www.encodeproject.org/files/ENCFF196KJS/@@download/ENCFF196KJS.bed.gz mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF796LDS bed broadPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE ENCFF001ZPM 1785267 ENCODE Consortium 83e931b2135f931336523682af10e2f2 https://www.encodeproject.org/files/ENCFF796LDS/@@download/ENCFF796LDS.bed.gz mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF259VYR bam alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 48 ENCFF001ZOT, ENCFF018NEO 1368927054 ENCODE Processing Pipeline 42aae779daa4b08737250594bfa1daac https://www.encodeproject.org/files/ENCFF259VYR/@@download/ENCFF259VYR.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF175TYK bam alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 48 ENCFF001ZPA, ENCFF018NEO 1216807264 ENCODE Processing Pipeline c35e18835f854bc3fa24a71313bec7ba https://www.encodeproject.org/files/ENCFF175TYK/@@download/ENCFF175TYK.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF556OHP bed narrowPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 ENCFF259VYR, ENCFF666VRA 1395683 ENCODE Processing Pipeline a8400b8df3bc621c4679b9a7b0e24bd4 https://www.encodeproject.org/files/ENCFF556OHP/@@download/ENCFF556OHP.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF596ZWC bigBed narrowPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 ENCFF589MNA 3884737 ENCODE Processing Pipeline 440667c0ba180def9090ac2411e88ceb https://www.encodeproject.org/files/ENCFF596ZWC/@@download/ENCFF596ZWC.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF589MNA bed narrowPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 ENCFF111OFQ, ENCFF175TYK 1360826 ENCODE Processing Pipeline 4c5d9433d705910b152064262149e46a https://www.encodeproject.org/files/ENCFF589MNA/@@download/ENCFF589MNA.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF850IMU bed narrowPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF175TYK, ENCFF259VYR, ENCFF666VRA 1619322 ENCODE Processing Pipeline 7a88b2665967d24f115e10a27df7cce7 https://www.encodeproject.org/files/ENCFF850IMU/@@download/ENCFF850IMU.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF667EQA bigBed narrowPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1, 2 ENCFF850IMU 4506714 ENCODE Processing Pipeline 8e0d660d3fbaf4cdede0a71125fc4298 https://www.encodeproject.org/files/ENCFF667EQA/@@download/ENCFF667EQA.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF996XYA bigWig signal p-value ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 ENCFF111OFQ, ENCFF175TYK 501057321 ENCODE Processing Pipeline 1c329ebf8ebfebe5ec02e933129c0bfa https://www.encodeproject.org/files/ENCFF996XYA/@@download/ENCFF996XYA.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF791GEY bigBed narrowPeak peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 ENCFF556OHP 3958916 ENCODE Processing Pipeline 7db1742a3042c7be107fe14a5cab0f84 https://www.encodeproject.org/files/ENCFF791GEY/@@download/ENCFF791GEY.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF519MIL bigWig signal p-value ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 ENCFF259VYR, ENCFF666VRA 475401038 ENCODE Processing Pipeline 7e0cc32a8a1fa49a043b203600ec6abe https://www.encodeproject.org/files/ENCFF519MIL/@@download/ENCFF519MIL.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF524EQN bigWig signal p-value ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF175TYK, ENCFF259VYR, ENCFF666VRA 871372591 ENCODE Processing Pipeline 9a5d3e2fb1d19539bdd5177f7b8cc62e https://www.encodeproject.org/files/ENCFF524EQN/@@download/ENCFF524EQN.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF717WDY bigWig fold change over control ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 ENCFF111OFQ, ENCFF175TYK 473669498 ENCODE Processing Pipeline 5ebd9915c96d5b40ddf88aeee15c9540 https://www.encodeproject.org/files/ENCFF717WDY/@@download/ENCFF717WDY.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF406BED bed narrowPeak replicated peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1, 2 ENCFF556OHP, ENCFF589MNA, ENCFF850IMU 1434190 ENCODE Processing Pipeline 687d84ffacdee178b64a16769a11fdbc https://www.encodeproject.org/files/ENCFF406BED/@@download/ENCFF406BED.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF131JZN bigBed narrowPeak replicated peaks ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1, 2 ENCFF406BED 3138356 ENCODE Processing Pipeline 9185d96bb55c505aa23b582a8060b7af https://www.encodeproject.org/files/ENCFF131JZN/@@download/ENCFF131JZN.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF831VOV bigWig fold change over control ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 ENCFF259VYR, ENCFF666VRA 520114761 ENCODE Processing Pipeline 2f021069e228158eaadf517ffa0570fe https://www.encodeproject.org/files/ENCFF831VOV/@@download/ENCFF831VOV.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF469DBC bigWig fold change over control ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF175TYK, ENCFF259VYR, ENCFF666VRA 933898926 ENCODE Processing Pipeline 2a0ffa8cedc8f21184f94bf29cffbe03 https://www.encodeproject.org/files/ENCFF469DBC/@@download/ENCFF469DBC.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001ZRU fastq reads ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1176781306 Bing Ren, UCSD 80289e3b0fd736d1675cda857ff667c3 SRA:SRR3652850 https://www.encodeproject.org/files/ENCFF001ZRU/@@download/ENCFF001ZRU.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZRV fastq reads ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1155247142 Bing Ren, UCSD 642de5ef1294e5413e1bdf89fb42be38 SRA:SRR3652852 https://www.encodeproject.org/files/ENCFF001ZRV/@@download/ENCFF001ZRV.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133CMZ bam alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRV, ENCFF806TVZ 963243858 ENCODE Processing Pipeline 435b828192332e5da2617a386c000cf2 https://www.encodeproject.org/files/ENCFF133CMZ/@@download/ENCFF133CMZ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF418PWC fastq reads ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 125315806 Bing Ren, UCSD 6df4eb070972fdee4da74c9287d61ac4 SRA:SRR3652851 https://www.encodeproject.org/files/ENCFF418PWC/@@download/ENCFF418PWC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF631AWW bam alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRU, ENCFF418PWC, ENCFF806TVZ 1055049562 ENCODE Processing Pipeline e47f6714bcbc12d01ec27d474b282787 https://www.encodeproject.org/files/ENCFF631AWW/@@download/ENCFF631AWW.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF323WQK bed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133CMZ, ENCFF631AWW, ENCFF656MYX, ENCFF844PWX 1083339 ENCODE Processing Pipeline 70f35791dc890745a0b5cc2cadecd585 https://www.encodeproject.org/files/ENCFF323WQK/@@download/ENCFF323WQK.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF038QQD bigBed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF830POO 4659588 ENCODE Processing Pipeline 0db91c554cb37b1c56b3b28f7070ce42 https://www.encodeproject.org/files/ENCFF038QQD/@@download/ENCFF038QQD.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF271KZD bigBed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF655EGY 3848290 ENCODE Processing Pipeline 2b20397f9af10ae8a70a9307951d022f https://www.encodeproject.org/files/ENCFF271KZD/@@download/ENCFF271KZD.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830POO bed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF631AWW, ENCFF656MYX, ENCFF844PWX 2015097 ENCODE Processing Pipeline d00da43b23574584e4c678b3b98a990f https://www.encodeproject.org/files/ENCFF830POO/@@download/ENCFF830POO.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF655EGY bed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF133CMZ, ENCFF656MYX, ENCFF844PWX 1605287 ENCODE Processing Pipeline 5e07bbfeb168e9560fe9a7fc3b492a71 https://www.encodeproject.org/files/ENCFF655EGY/@@download/ENCFF655EGY.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF219ODZ bigBed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF323WQK 2605190 ENCODE Processing Pipeline 2598dd32598629b1fe831e9fa10b1759 https://www.encodeproject.org/files/ENCFF219ODZ/@@download/ENCFF219ODZ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF091PGB bigWig signal p-value ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF631AWW, ENCFF656MYX, ENCFF844PWX 381117911 ENCODE Processing Pipeline 2dc6ada530bec5a69742030af464a56c https://www.encodeproject.org/files/ENCFF091PGB/@@download/ENCFF091PGB.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF408MWQ bigWig signal p-value ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133CMZ, ENCFF631AWW, ENCFF656MYX, ENCFF844PWX 501748235 ENCODE Processing Pipeline a20832a2461efd2da36878ded1f357c7 https://www.encodeproject.org/files/ENCFF408MWQ/@@download/ENCFF408MWQ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF839QZA bigWig signal p-value ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF133CMZ, ENCFF656MYX, ENCFF844PWX 365264143 ENCODE Processing Pipeline 2c73e65e48256cb5140dd059ecb10509 https://www.encodeproject.org/files/ENCFF839QZA/@@download/ENCFF839QZA.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF677CWF bigWig fold change over control ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF631AWW, ENCFF656MYX, ENCFF844PWX 407068636 ENCODE Processing Pipeline b60856b3347ecd26b56af84c0af92447 https://www.encodeproject.org/files/ENCFF677CWF/@@download/ENCFF677CWF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF038OAL bigBed narrowPeak replicated peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF988HWG 1920830 ENCODE Processing Pipeline defb2ee795b9fc8475c1a63c742a76c5 https://www.encodeproject.org/files/ENCFF038OAL/@@download/ENCFF038OAL.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF015DAB bigWig fold change over control ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133CMZ, ENCFF631AWW, ENCFF656MYX, ENCFF844PWX 656426783 ENCODE Processing Pipeline d104ebf71f28fd2c95044d7510667cbf https://www.encodeproject.org/files/ENCFF015DAB/@@download/ENCFF015DAB.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF309VWI bigWig fold change over control ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF133CMZ, ENCFF656MYX, ENCFF844PWX 406951988 ENCODE Processing Pipeline 8e30c97d66c67b0b4443e863ad92ec57 https://www.encodeproject.org/files/ENCFF309VWI/@@download/ENCFF309VWI.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF988HWG bed narrowPeak replicated peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF323WQK, ENCFF655EGY, ENCFF830POO 865247 ENCODE Processing Pipeline e40c7aa0d2fbf2099ca84bf97f06a353 https://www.encodeproject.org/files/ENCFF988HWG/@@download/ENCFF988HWG.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF348RIL bam unfiltered alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRV, ENCFF018NEO 1482772199 ENCODE Processing Pipeline d65b7094a93212bdc092e43128b250ab https://www.encodeproject.org/files/ENCFF348RIL/@@download/ENCFF348RIL.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF532WFK bam unfiltered alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRU, ENCFF018NEO, ENCFF418PWC 1622131406 ENCODE Processing Pipeline 4f57ba85cd072fb82cec0319f92339ff https://www.encodeproject.org/files/ENCFF532WFK/@@download/ENCFF532WFK.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF781URQ bam alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRV, ENCFF018NEO 962968260 ENCODE Processing Pipeline b14fbee4ae3dd9e6c900713e15b252d1 https://www.encodeproject.org/files/ENCFF781URQ/@@download/ENCFF781URQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF206GAZ bam alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRU, ENCFF018NEO, ENCFF418PWC 1025113753 ENCODE Processing Pipeline 9612fd0d190e5f731a7e7928298060af https://www.encodeproject.org/files/ENCFF206GAZ/@@download/ENCFF206GAZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF940FAE bed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF206GAZ, ENCFF627JLU 1957721 ENCODE Processing Pipeline 88f3a504843305cd651422398d6f3b5c https://www.encodeproject.org/files/ENCFF940FAE/@@download/ENCFF940FAE.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF498JJI bed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF627JLU, ENCFF781URQ 1120020 ENCODE Processing Pipeline 8d6ceef9c491b36c87e3853b0ec930bb https://www.encodeproject.org/files/ENCFF498JJI/@@download/ENCFF498JJI.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF446AJH bed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF206GAZ, ENCFF627JLU, ENCFF781URQ 849764 ENCODE Processing Pipeline 13389a6f3a284d091157babde424557c https://www.encodeproject.org/files/ENCFF446AJH/@@download/ENCFF446AJH.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF397HYB bigBed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF940FAE 4524025 ENCODE Processing Pipeline e9db82eb2b43bc6e686805073c9a4011 https://www.encodeproject.org/files/ENCFF397HYB/@@download/ENCFF397HYB.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF684WJB bigBed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF498JJI 2783602 ENCODE Processing Pipeline 9470f492140ed34b6c23708933b2da88 https://www.encodeproject.org/files/ENCFF684WJB/@@download/ENCFF684WJB.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF758SXS bigBed narrowPeak peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF446AJH 2104877 ENCODE Processing Pipeline 5c8d0e558632a067f7d58fb12e5572ca https://www.encodeproject.org/files/ENCFF758SXS/@@download/ENCFF758SXS.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF354UEM bigWig signal p-value ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF206GAZ, ENCFF627JLU 413899265 ENCODE Processing Pipeline 4148adde202138eb1171f2593b30c4b3 https://www.encodeproject.org/files/ENCFF354UEM/@@download/ENCFF354UEM.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF747VCK bigWig signal p-value ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF627JLU, ENCFF781URQ 385804604 ENCODE Processing Pipeline 37527d2419c8ea016799b984aea2b4f9 https://www.encodeproject.org/files/ENCFF747VCK/@@download/ENCFF747VCK.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF691QAC bigWig signal p-value ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF206GAZ, ENCFF627JLU, ENCFF781URQ 522034158 ENCODE Processing Pipeline 6fbf8206cc5f2dfb67ab0cfe8d7e5930 https://www.encodeproject.org/files/ENCFF691QAC/@@download/ENCFF691QAC.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF012IRQ bigWig fold change over control ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF206GAZ, ENCFF627JLU 406404002 ENCODE Processing Pipeline 4cbba88b5029cbcc0e98cc24bdc927e2 https://www.encodeproject.org/files/ENCFF012IRQ/@@download/ENCFF012IRQ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF030DES bigWig fold change over control ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF627JLU, ENCFF781URQ 414489895 ENCODE Processing Pipeline 1dd2cf5e28d8527263901d2d55ddf986 https://www.encodeproject.org/files/ENCFF030DES/@@download/ENCFF030DES.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF124AFN bigWig fold change over control ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF206GAZ, ENCFF627JLU, ENCFF781URQ 677230840 ENCODE Processing Pipeline ba5506da8c832233f62e1c382ca0e12f https://www.encodeproject.org/files/ENCFF124AFN/@@download/ENCFF124AFN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF542GAS bed narrowPeak replicated peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF446AJH, ENCFF498JJI, ENCFF940FAE 721844 ENCODE Processing Pipeline e03e2d8bb158605f2b04a2d7d9f19632 https://www.encodeproject.org/files/ENCFF542GAS/@@download/ENCFF542GAS.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF062LZU bigBed narrowPeak replicated peaks ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF542GAS 1631338 ENCODE Processing Pipeline f862b3463f79898a80fcb112a6cd1840 https://www.encodeproject.org/files/ENCFF062LZU/@@download/ENCFF062LZU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF749DSU fastq reads ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1493653469 Bing Ren, UCSD 21874a739c3980198df95c8375600891 SRA:SRR3652220 https://www.encodeproject.org/files/ENCFF749DSU/@@download/ENCFF749DSU.fastq.gz Illumina HiSeq 4000 /files/ENCFF441PKE/ released moderate library complexity, mild to moderate bottlenecking ENCFF381CNM fastq reads ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1693428341 Bing Ren, UCSD a359087da65f976bf2b1bbf90711a20d SRA:SRR3652219 https://www.encodeproject.org/files/ENCFF381CNM/@@download/ENCFF381CNM.fastq.gz Illumina HiSeq 4000 /files/ENCFF517ODV/, /files/ENCFF961WKK/ released moderate library complexity, mild to moderate bottlenecking ENCFF363INM bam alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF749DSU, ENCFF806TVZ 1151373654 ENCODE Processing Pipeline a8896069fdbd1653f020b44a73fd099d https://www.encodeproject.org/files/ENCFF363INM/@@download/ENCFF363INM.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF978YGL bam alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF381CNM, ENCFF806TVZ 1208781215 ENCODE Processing Pipeline 55b9482f1b916988538df9cda990c0b1 https://www.encodeproject.org/files/ENCFF978YGL/@@download/ENCFF978YGL.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF239DDH bed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF363INM 894227 ENCODE Processing Pipeline a6570196822cec996fa7ba6dc19c14ad https://www.encodeproject.org/files/ENCFF239DDH/@@download/ENCFF239DDH.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF266OZE bigBed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF239DDH 2809717 ENCODE Processing Pipeline 20f04ee0fb1dd9eddb68f773828eaa57 https://www.encodeproject.org/files/ENCFF266OZE/@@download/ENCFF266OZE.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF523NAH bed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF363INM, ENCFF978YGL 1058110 ENCODE Processing Pipeline 0abe8c732dbc799ef86b3fc2b3a5759f https://www.encodeproject.org/files/ENCFF523NAH/@@download/ENCFF523NAH.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF646MYQ bigBed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF552DHB 2749201 ENCODE Processing Pipeline cebdb0e7910ea3476d7125c810029a3a https://www.encodeproject.org/files/ENCFF646MYQ/@@download/ENCFF646MYQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF552DHB bed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF978YGL 874366 ENCODE Processing Pipeline 0138ce20dfcf7cfe0c2e37af987c2963 https://www.encodeproject.org/files/ENCFF552DHB/@@download/ENCFF552DHB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF521CND bigBed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF523NAH 3236997 ENCODE Processing Pipeline d2703691bc1a80edfbdf07e5a4d9357d https://www.encodeproject.org/files/ENCFF521CND/@@download/ENCFF521CND.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF660XSY bigWig signal p-value ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF363INM, ENCFF978YGL 1004179500 ENCODE Processing Pipeline 106a6e8867c7a1e36395a8f79ad7ac13 https://www.encodeproject.org/files/ENCFF660XSY/@@download/ENCFF660XSY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF144YWF bigWig signal p-value ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF363INM 492171169 ENCODE Processing Pipeline c56b1788618c45ab29fe532779dd5c1d https://www.encodeproject.org/files/ENCFF144YWF/@@download/ENCFF144YWF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF174MYK bigWig signal p-value ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF978YGL 488225719 ENCODE Processing Pipeline 423ac177070bd0c5f96ac666e7277e8c https://www.encodeproject.org/files/ENCFF174MYK/@@download/ENCFF174MYK.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF964ATC bigWig fold change over control ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF028OLU, ENCFF978YGL 549400014 ENCODE Processing Pipeline 2c487c5d3d7d7ab98f35c04a5a59547c https://www.encodeproject.org/files/ENCFF964ATC/@@download/ENCFF964ATC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF040ZQX bigWig fold change over control ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF059DKF, ENCFF363INM 522821328 ENCODE Processing Pipeline d2cd87ea040c1b88fafcf371d49ed954 https://www.encodeproject.org/files/ENCFF040ZQX/@@download/ENCFF040ZQX.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF678AVR bed narrowPeak replicated peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF239DDH, ENCFF523NAH, ENCFF552DHB 1009122 ENCODE Processing Pipeline e535411e27190928b6c4809915587ac1 https://www.encodeproject.org/files/ENCFF678AVR/@@download/ENCFF678AVR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF031THR bigWig fold change over control ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF028OLU, ENCFF059DKF, ENCFF363INM, ENCFF978YGL 1011662411 ENCODE Processing Pipeline 47c029fab6551adb26f894d17d36f69a https://www.encodeproject.org/files/ENCFF031THR/@@download/ENCFF031THR.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF428ZOK bigBed narrowPeak replicated peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF678AVR 2353338 ENCODE Processing Pipeline 8a8a2c31f9940e07d777bbfdf4e342e2 https://www.encodeproject.org/files/ENCFF428ZOK/@@download/ENCFF428ZOK.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF561PIQ bam unfiltered alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF381CNM 2027709103 ENCODE Processing Pipeline 9929a3283ab2c7a12f20ddb649b8c5c2 https://www.encodeproject.org/files/ENCFF561PIQ/@@download/ENCFF561PIQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF839WNH bam unfiltered alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF749DSU 1788417135 ENCODE Processing Pipeline 136c9434ca05908061a036d8e6246159 https://www.encodeproject.org/files/ENCFF839WNH/@@download/ENCFF839WNH.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF299UHM bam alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF749DSU 1151197463 ENCODE Processing Pipeline ff80414f78dffd633b02f694009b3288 https://www.encodeproject.org/files/ENCFF299UHM/@@download/ENCFF299UHM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF349LSN bam alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF381CNM 1208571038 ENCODE Processing Pipeline a248fabcb060e621cd0f58d307190a30 https://www.encodeproject.org/files/ENCFF349LSN/@@download/ENCFF349LSN.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF404QZE bed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF349LSN, ENCFF570IJH 874775 ENCODE Processing Pipeline 6b73ac053f279bdc84b2fabaf283de8a https://www.encodeproject.org/files/ENCFF404QZE/@@download/ENCFF404QZE.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF891TRA bed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF299UHM, ENCFF387WDC 898232 ENCODE Processing Pipeline 50aadbe0f1d726ec50eee155d00d650c https://www.encodeproject.org/files/ENCFF891TRA/@@download/ENCFF891TRA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF172GGZ bed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF299UHM, ENCFF349LSN, ENCFF387WDC, ENCFF570IJH 1058831 ENCODE Processing Pipeline 21b8c14e16ca3770378c17922423551a https://www.encodeproject.org/files/ENCFF172GGZ/@@download/ENCFF172GGZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF755QCF bigBed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF404QZE 2751909 ENCODE Processing Pipeline b0fd4e757292ef7f34f65094fbe1c30a https://www.encodeproject.org/files/ENCFF755QCF/@@download/ENCFF755QCF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF313EAA bigBed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF891TRA 2833408 ENCODE Processing Pipeline 2a81cdb5238504a0aa10608ec1e5324a https://www.encodeproject.org/files/ENCFF313EAA/@@download/ENCFF313EAA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF028SEN bigBed narrowPeak peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF172GGZ 3240502 ENCODE Processing Pipeline 303bf1ff5e115a353fc4f09131eba352 https://www.encodeproject.org/files/ENCFF028SEN/@@download/ENCFF028SEN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF204MEA bigWig signal p-value ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF349LSN, ENCFF570IJH 526970473 ENCODE Processing Pipeline 8219b6e8c5bbb4ae24512052101619a8 https://www.encodeproject.org/files/ENCFF204MEA/@@download/ENCFF204MEA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF649TDN bigWig signal p-value ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF299UHM, ENCFF387WDC 603152181 ENCODE Processing Pipeline 91b1074535dbbfb33e5bae3961538732 https://www.encodeproject.org/files/ENCFF649TDN/@@download/ENCFF649TDN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF076CHV bigWig signal p-value ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF299UHM, ENCFF349LSN, ENCFF387WDC, ENCFF570IJH 828895206 ENCODE Processing Pipeline 62bb2fbeb174c5d256432297772decea https://www.encodeproject.org/files/ENCFF076CHV/@@download/ENCFF076CHV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF515GIY bigWig fold change over control ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF349LSN, ENCFF570IJH 549662411 ENCODE Processing Pipeline ffc5d57c8015524381c78ff0331ebdc9 https://www.encodeproject.org/files/ENCFF515GIY/@@download/ENCFF515GIY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF107OUD bigWig fold change over control ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF299UHM, ENCFF387WDC 559618255 ENCODE Processing Pipeline 4137bd19a71c9aa6836af0b361195f8d https://www.encodeproject.org/files/ENCFF107OUD/@@download/ENCFF107OUD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF064NXP bigWig fold change over control ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF299UHM, ENCFF349LSN, ENCFF387WDC, ENCFF570IJH 1015065680 ENCODE Processing Pipeline 88a5f0e4237ca06336030845590c1ee6 https://www.encodeproject.org/files/ENCFF064NXP/@@download/ENCFF064NXP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF251COU bed narrowPeak replicated peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF172GGZ, ENCFF404QZE, ENCFF891TRA 1003741 ENCODE Processing Pipeline 93f30f26a379c59f437efbaf71548f4a https://www.encodeproject.org/files/ENCFF251COU/@@download/ENCFF251COU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF812ZLQ bigBed narrowPeak replicated peaks ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF251COU 2342652 ENCODE Processing Pipeline 8e6c5804a8cf0a761e054444af542bb8 https://www.encodeproject.org/files/ENCFF812ZLQ/@@download/ENCFF812ZLQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF121EQW fastq reads ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1355772647 Bing Ren, UCSD e5c6ae552a652e35ff8aa296e7ce1535 SRA:SRR3653008 https://www.encodeproject.org/files/ENCFF121EQW/@@download/ENCFF121EQW.fastq.gz Illumina HiSeq 2500 /files/ENCFF511ESM/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF567IST fastq reads ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2622524251 Bing Ren, UCSD edc631f9dbec50b4160d4d90f97f8b2c SRA:SRR3653006 https://www.encodeproject.org/files/ENCFF567IST/@@download/ENCFF567IST.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF650JIB fastq reads ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1288395557 Bing Ren, UCSD e6a516aa0e1bd7ca3731fd8211facd2f SRA:SRR3653007 https://www.encodeproject.org/files/ENCFF650JIB/@@download/ENCFF650JIB.fastq.gz Illumina HiSeq 2500 /files/ENCFF634EPK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF382YNY fastq reads ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 1403266764 Bing Ren, UCSD e2ab5185c5dea987c02eba6d775b437b SRA:SRR3653009 https://www.encodeproject.org/files/ENCFF382YNY/@@download/ENCFF382YNY.fastq.gz Illumina HiSeq 2500 /files/ENCFF511ESM/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF206FJL fastq reads ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1938182722 Bing Ren, UCSD fad6cae3d03a12ae330cd325853a9be5 SRA:SRR3653010 https://www.encodeproject.org/files/ENCFF206FJL/@@download/ENCFF206FJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF968UGU bam alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF567IST, ENCFF650JIB, ENCFF806TVZ 2923242667 ENCODE Processing Pipeline ba46a075bc1d353ac1c23563cbfad50a https://www.encodeproject.org/files/ENCFF968UGU/@@download/ENCFF968UGU.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF199WVB bam alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF121EQW, ENCFF206FJL, ENCFF382YNY, ENCFF806TVZ 3338257970 ENCODE Processing Pipeline d0964609720c4c5c2a11d6ad78c334b2 https://www.encodeproject.org/files/ENCFF199WVB/@@download/ENCFF199WVB.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF366XMN bigBed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF059BPP 6212921 ENCODE Processing Pipeline 35e5b3debd91dac29b6d20fc86d54ce0 https://www.encodeproject.org/files/ENCFF366XMN/@@download/ENCFF366XMN.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF059BPP bed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF199WVB, ENCFF949WTQ 2758493 ENCODE Processing Pipeline b48f983b0a150941eabdffebb0279fed https://www.encodeproject.org/files/ENCFF059BPP/@@download/ENCFF059BPP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF352PXK bed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF949WTQ, ENCFF968UGU 2237591 ENCODE Processing Pipeline c74e9f34f453f2dcb265b712f9a82716 https://www.encodeproject.org/files/ENCFF352PXK/@@download/ENCFF352PXK.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF445OGR bed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF199WVB, ENCFF949WTQ, ENCFF968UGU 2319582 ENCODE Processing Pipeline 45eee27c27683b5dc4edc8a95398e1cb https://www.encodeproject.org/files/ENCFF445OGR/@@download/ENCFF445OGR.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF025YIL bigBed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF352PXK 5224369 ENCODE Processing Pipeline 48923b18c13f9446e35d18828e9b2957 https://www.encodeproject.org/files/ENCFF025YIL/@@download/ENCFF025YIL.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF957DGJ bigBed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF445OGR 5146647 ENCODE Processing Pipeline e18f5bbe56b41b6f0bbc0818d32650d5 https://www.encodeproject.org/files/ENCFF957DGJ/@@download/ENCFF957DGJ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF825IGY bigWig signal p-value ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF199WVB, ENCFF949WTQ 997428669 ENCODE Processing Pipeline 55cbf25e909e5cede2c32ea1219a435b https://www.encodeproject.org/files/ENCFF825IGY/@@download/ENCFF825IGY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF323EQW bigWig signal p-value ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF949WTQ, ENCFF968UGU 1014679920 ENCODE Processing Pipeline 9ea033cb030b413a9377768beda243a7 https://www.encodeproject.org/files/ENCFF323EQW/@@download/ENCFF323EQW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF262ZYM bigWig signal p-value ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF199WVB, ENCFF949WTQ, ENCFF968UGU 1247153096 ENCODE Processing Pipeline a9b87cb95b1cc8b91bc97c5b524576fc https://www.encodeproject.org/files/ENCFF262ZYM/@@download/ENCFF262ZYM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF831RYN bigWig fold change over control ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF199WVB, ENCFF949WTQ 1204156351 ENCODE Processing Pipeline 77f06bc8b72260e0323747084476a73c https://www.encodeproject.org/files/ENCFF831RYN/@@download/ENCFF831RYN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF865MUF bigWig fold change over control ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF029DGH, ENCFF949WTQ, ENCFF968UGU 1090647931 ENCODE Processing Pipeline 1b628ecf47402472ce2558dddc4e4af1 https://www.encodeproject.org/files/ENCFF865MUF/@@download/ENCFF865MUF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF168HKI bigWig fold change over control ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF199WVB, ENCFF949WTQ, ENCFF968UGU 1641072822 ENCODE Processing Pipeline 1085cfd1aba858c9c59d16200a48716b https://www.encodeproject.org/files/ENCFF168HKI/@@download/ENCFF168HKI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF640WQE bed narrowPeak replicated peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF059BPP, ENCFF352PXK, ENCFF445OGR 2267262 ENCODE Processing Pipeline a1a8cf38d85f488bc48577837c6544b3 https://www.encodeproject.org/files/ENCFF640WQE/@@download/ENCFF640WQE.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF110YXU bigBed narrowPeak replicated peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF640WQE 4031615 ENCODE Processing Pipeline 959664e309a60a917b70f82a0cfe9e41 https://www.encodeproject.org/files/ENCFF110YXU/@@download/ENCFF110YXU.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF719WJU bam unfiltered alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF567IST, ENCFF650JIB 4665259286 ENCODE Processing Pipeline ce46b3994f463ac541ea262a1430a304 https://www.encodeproject.org/files/ENCFF719WJU/@@download/ENCFF719WJU.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF969HTC bam unfiltered alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF121EQW, ENCFF206FJL, ENCFF382YNY 5531286057 ENCODE Processing Pipeline 7b19f0b28e8a41969b5f43f3240cf300 https://www.encodeproject.org/files/ENCFF969HTC/@@download/ENCFF969HTC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF018JYA bam alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF567IST, ENCFF650JIB 2922616112 ENCODE Processing Pipeline ecb2d5e65af404d69a542f8e60138ede https://www.encodeproject.org/files/ENCFF018JYA/@@download/ENCFF018JYA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF880XNZ bam alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF121EQW, ENCFF206FJL, ENCFF382YNY 3337642075 ENCODE Processing Pipeline aeacf5652f695636a0c80b8135121484 https://www.encodeproject.org/files/ENCFF880XNZ/@@download/ENCFF880XNZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF568FZK bed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF269JKO, ENCFF880XNZ 2751364 ENCODE Processing Pipeline 5de6e40e6372bcff990c2951d550abe1 https://www.encodeproject.org/files/ENCFF568FZK/@@download/ENCFF568FZK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF777PAQ bed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018JYA, ENCFF269JKO 2029370 ENCODE Processing Pipeline de0681a731cbbc100a9bab769d0b54c2 https://www.encodeproject.org/files/ENCFF777PAQ/@@download/ENCFF777PAQ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF942QEX bed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018JYA, ENCFF079JAD, ENCFF269JKO, ENCFF880XNZ 2687188 ENCODE Processing Pipeline d35cf79f94b54f048ec1f494703a4b6d https://www.encodeproject.org/files/ENCFF942QEX/@@download/ENCFF942QEX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF135UWY bigBed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF568FZK 6150119 ENCODE Processing Pipeline dcfe15dcafc9d98e1112dffc99d9461e https://www.encodeproject.org/files/ENCFF135UWY/@@download/ENCFF135UWY.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF271EHA bigBed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF777PAQ 4842574 ENCODE Processing Pipeline 3887ea353baefcaf8c016c66ddb6d7db https://www.encodeproject.org/files/ENCFF271EHA/@@download/ENCFF271EHA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF020OJJ bigBed narrowPeak peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF942QEX 5970603 ENCODE Processing Pipeline fc4a04229715647a7d6b9cc1718335f8 https://www.encodeproject.org/files/ENCFF020OJJ/@@download/ENCFF020OJJ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF774DVW bigWig signal p-value ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF269JKO, ENCFF880XNZ 1148296924 ENCODE Processing Pipeline c5e276cb042064064aca63164d66d604 https://www.encodeproject.org/files/ENCFF774DVW/@@download/ENCFF774DVW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF803BMQ bigWig signal p-value ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018JYA, ENCFF269JKO 962565708 ENCODE Processing Pipeline b233468bab98f59aec48becd3e071d85 https://www.encodeproject.org/files/ENCFF803BMQ/@@download/ENCFF803BMQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF426QNH bigWig signal p-value ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018JYA, ENCFF079JAD, ENCFF269JKO, ENCFF880XNZ 1682378254 ENCODE Processing Pipeline a036497d062607a7bc41dd13421b69ca https://www.encodeproject.org/files/ENCFF426QNH/@@download/ENCFF426QNH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF036SSF bigWig fold change over control ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF269JKO, ENCFF880XNZ 1305565477 ENCODE Processing Pipeline b4b1074cdf5f67da30fe490dec9e04c9 https://www.encodeproject.org/files/ENCFF036SSF/@@download/ENCFF036SSF.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF729UNL bigWig fold change over control ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018JYA, ENCFF269JKO 973431279 ENCODE Processing Pipeline df1e04e4bbf185aee0c94f0d64584c32 https://www.encodeproject.org/files/ENCFF729UNL/@@download/ENCFF729UNL.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF110NKA bigWig fold change over control ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF018JYA, ENCFF079JAD, ENCFF269JKO, ENCFF880XNZ 1777079188 ENCODE Processing Pipeline 60a40ba6f5d3218ca45f99e18f1cdb0e https://www.encodeproject.org/files/ENCFF110NKA/@@download/ENCFF110NKA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF014WSM bed narrowPeak replicated peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF568FZK, ENCFF777PAQ, ENCFF942QEX 2095214 ENCODE Processing Pipeline 9674f4015d0b5e0d2459f77ea1063862 https://www.encodeproject.org/files/ENCFF014WSM/@@download/ENCFF014WSM.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF909HQS bigBed narrowPeak replicated peaks ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF014WSM 3644185 ENCODE Processing Pipeline d3fea040154035cfc774d0e92845b832 https://www.encodeproject.org/files/ENCFF909HQS/@@download/ENCFF909HQS.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF262ULV fastq reads ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1882687382 Bing Ren, UCSD 8ade4f2f80724df6f4534e667b498f1a SRA:SRR3651957 https://www.encodeproject.org/files/ENCFF262ULV/@@download/ENCFF262ULV.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released mild to moderate bottlenecking ENCFF414MGO fastq reads ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1685428809 Bing Ren, UCSD cf32b0a26dcb4f873f2407ce289bb943 SRA:SRR3651956 https://www.encodeproject.org/files/ENCFF414MGO/@@download/ENCFF414MGO.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released mild to moderate bottlenecking ENCFF958KAW bam alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF262ULV, ENCFF806TVZ 1761627117 ENCODE Processing Pipeline 793725d3c8382567e0e0c5b3ffcd0da1 https://www.encodeproject.org/files/ENCFF958KAW/@@download/ENCFF958KAW.bam mm10-minimal archived mild to moderate bottlenecking ENCFF966PDQ bam alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF414MGO, ENCFF806TVZ 1597312175 ENCODE Processing Pipeline e3958fd7611d0a3817f3aa8f31cb0bda https://www.encodeproject.org/files/ENCFF966PDQ/@@download/ENCFF966PDQ.bam mm10-minimal archived mild to moderate bottlenecking ENCFF976LJQ bed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF958KAW, ENCFF966PDQ, ENCFF986JLW 1033227 ENCODE Processing Pipeline ee352d8d61d6073b7822547c8d2a5c02 https://www.encodeproject.org/files/ENCFF976LJQ/@@download/ENCFF976LJQ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF118WKG bigBed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF149EAF 2749108 ENCODE Processing Pipeline c67a10b30bc2ce32d8638d0252748bd6 https://www.encodeproject.org/files/ENCFF118WKG/@@download/ENCFF118WKG.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF149EAF bed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF966PDQ, ENCFF986JLW 895578 ENCODE Processing Pipeline 471163c0da95a1d466058a4d28e0762f https://www.encodeproject.org/files/ENCFF149EAF/@@download/ENCFF149EAF.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF722VZX bigBed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF228UME 2758076 ENCODE Processing Pipeline f5911be04b2fb45cac8a264c6a308a14 https://www.encodeproject.org/files/ENCFF722VZX/@@download/ENCFF722VZX.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF228UME bed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF958KAW 900505 ENCODE Processing Pipeline ddc686f30627c14251410bd4c654b473 https://www.encodeproject.org/files/ENCFF228UME/@@download/ENCFF228UME.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF046DBQ bigBed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF976LJQ 3080280 ENCODE Processing Pipeline af3a4ab81ae787badbf1bf2ba55808e7 https://www.encodeproject.org/files/ENCFF046DBQ/@@download/ENCFF046DBQ.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF037YBS bigWig signal p-value ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF958KAW 666041993 ENCODE Processing Pipeline 3efbd02d38e04114f37d63f555642d0a https://www.encodeproject.org/files/ENCFF037YBS/@@download/ENCFF037YBS.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF262HBU bigWig signal p-value ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF966PDQ, ENCFF986JLW 633827628 ENCODE Processing Pipeline de105d3156002fafd018aaeb1decef71 https://www.encodeproject.org/files/ENCFF262HBU/@@download/ENCFF262HBU.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF416VPI bigWig signal p-value ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF958KAW, ENCFF966PDQ, ENCFF986JLW 1000791437 ENCODE Processing Pipeline 1ad77d68cf5b1cf5c8ab67aa4a00fe0e https://www.encodeproject.org/files/ENCFF416VPI/@@download/ENCFF416VPI.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF970ZUN bigWig fold change over control ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF966PDQ, ENCFF986JLW 683952780 ENCODE Processing Pipeline 44a70e9280e629a47672aad3635c54e6 https://www.encodeproject.org/files/ENCFF970ZUN/@@download/ENCFF970ZUN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF437YDW bigWig fold change over control ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF958KAW 737470305 ENCODE Processing Pipeline 1f4e0eab2ce9755c4933a1c39c930e68 https://www.encodeproject.org/files/ENCFF437YDW/@@download/ENCFF437YDW.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF750NCF bigWig fold change over control ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF958KAW, ENCFF966PDQ, ENCFF986JLW 1353351874 ENCODE Processing Pipeline aa00c7df79fc976cccd2bef5d1aff948 https://www.encodeproject.org/files/ENCFF750NCF/@@download/ENCFF750NCF.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF122YWA bigBed narrowPeak replicated peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF664CWT 2260572 ENCODE Processing Pipeline a9698b66cebcbf8750fbbe0dcac8cc79 https://www.encodeproject.org/files/ENCFF122YWA/@@download/ENCFF122YWA.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF664CWT bed narrowPeak replicated peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF149EAF, ENCFF228UME, ENCFF976LJQ 1000003 ENCODE Processing Pipeline a65a5b28a9dc02b6d9fea4ec4684e2cf https://www.encodeproject.org/files/ENCFF664CWT/@@download/ENCFF664CWT.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF956MUN bam unfiltered alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF414MGO 2173398502 ENCODE Processing Pipeline 568c3014d3ea25b38eda1e4b78b5f98f https://www.encodeproject.org/files/ENCFF956MUN/@@download/ENCFF956MUN.bam mm10 released mild to moderate bottlenecking ENCFF324IEE bam unfiltered alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF262ULV 2383286797 ENCODE Processing Pipeline 82ee14beb17c0fc7587cd372544cf3a1 https://www.encodeproject.org/files/ENCFF324IEE/@@download/ENCFF324IEE.bam mm10 released mild to moderate bottlenecking ENCFF303IPG bam alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF414MGO 1597014588 ENCODE Processing Pipeline cbe75cf197a8ddd1e128bf2d1a322f8c https://www.encodeproject.org/files/ENCFF303IPG/@@download/ENCFF303IPG.bam mm10 released mild to moderate bottlenecking ENCFF240VYF bam alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF262ULV 1761313937 ENCODE Processing Pipeline c04bdb9d68042210dd14cf459d986a1f https://www.encodeproject.org/files/ENCFF240VYF/@@download/ENCFF240VYF.bam mm10 released mild to moderate bottlenecking ENCFF444PFN bed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF303IPG, ENCFF970FNZ 901378 ENCODE Processing Pipeline a66ab0e88b5fe167c0c48375416600e1 https://www.encodeproject.org/files/ENCFF444PFN/@@download/ENCFF444PFN.bed.gz mm10 released mild to moderate bottlenecking ENCFF487YQU bed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF240VYF, ENCFF614XRG 895558 ENCODE Processing Pipeline 736ebaffd857afdb852b5fb63869a641 https://www.encodeproject.org/files/ENCFF487YQU/@@download/ENCFF487YQU.bed.gz mm10 released mild to moderate bottlenecking ENCFF711IJV bed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF240VYF, ENCFF303IPG, ENCFF614XRG, ENCFF970FNZ 1033497 ENCODE Processing Pipeline 1cd1288030c1d9043db21a898993ee27 https://www.encodeproject.org/files/ENCFF711IJV/@@download/ENCFF711IJV.bed.gz mm10 released mild to moderate bottlenecking ENCFF901IYZ bigBed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF444PFN 2770697 ENCODE Processing Pipeline 1eb3b21eb7225c1558965f1e76586000 https://www.encodeproject.org/files/ENCFF901IYZ/@@download/ENCFF901IYZ.bigBed mm10 released mild to moderate bottlenecking ENCFF856SIG bigBed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF487YQU 2751387 ENCODE Processing Pipeline 80b0061b1d320b2675ee40a77dd92455 https://www.encodeproject.org/files/ENCFF856SIG/@@download/ENCFF856SIG.bigBed mm10 released mild to moderate bottlenecking ENCFF432LBG bigBed narrowPeak peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF711IJV 3082900 ENCODE Processing Pipeline 56ee4be1fc9812ea2433eadb563733ae https://www.encodeproject.org/files/ENCFF432LBG/@@download/ENCFF432LBG.bigBed mm10 released mild to moderate bottlenecking ENCFF688NRM bigWig signal p-value ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF303IPG, ENCFF970FNZ 570700847 ENCODE Processing Pipeline a5bfd14e2ef4169dcfcd42c6530a2d33 https://www.encodeproject.org/files/ENCFF688NRM/@@download/ENCFF688NRM.bigWig mm10 released mild to moderate bottlenecking ENCFF487FMX bigWig signal p-value ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF240VYF, ENCFF614XRG 618645634 ENCODE Processing Pipeline 450ce57034dc77a75fc6699dd633e9a3 https://www.encodeproject.org/files/ENCFF487FMX/@@download/ENCFF487FMX.bigWig mm10 released mild to moderate bottlenecking ENCFF884RKH bigWig signal p-value ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF240VYF, ENCFF303IPG, ENCFF614XRG, ENCFF970FNZ 1083844508 ENCODE Processing Pipeline ccf3a9bee28dc8903fe51f4c25beb9a2 https://www.encodeproject.org/files/ENCFF884RKH/@@download/ENCFF884RKH.bigWig mm10 released mild to moderate bottlenecking ENCFF046WRB bigWig fold change over control ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF303IPG, ENCFF970FNZ 699115455 ENCODE Processing Pipeline ceb13fda3ecf36c75fbcd74d163e825b https://www.encodeproject.org/files/ENCFF046WRB/@@download/ENCFF046WRB.bigWig mm10 released mild to moderate bottlenecking ENCFF602CQY bigWig fold change over control ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF240VYF, ENCFF614XRG 737029858 ENCODE Processing Pipeline 4a3d41af157437f72d48fcc0b35e8644 https://www.encodeproject.org/files/ENCFF602CQY/@@download/ENCFF602CQY.bigWig mm10 released mild to moderate bottlenecking ENCFF558KHU bigWig fold change over control ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF240VYF, ENCFF303IPG, ENCFF614XRG, ENCFF970FNZ 1352494441 ENCODE Processing Pipeline 15342c1f528e739614d84108d783e0c2 https://www.encodeproject.org/files/ENCFF558KHU/@@download/ENCFF558KHU.bigWig mm10 released mild to moderate bottlenecking ENCFF433YIT bed narrowPeak replicated peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF444PFN, ENCFF487YQU, ENCFF711IJV 1005525 ENCODE Processing Pipeline 3bf5e1a6219d22be8f69435ec4c5b14c https://www.encodeproject.org/files/ENCFF433YIT/@@download/ENCFF433YIT.bed.gz mm10 released mild to moderate bottlenecking ENCFF821PDV bigBed narrowPeak replicated peaks ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF433YIT 2272014 ENCODE Processing Pipeline de6b71032f03243c1210020eb1ccc221 https://www.encodeproject.org/files/ENCFF821PDV/@@download/ENCFF821PDV.bigBed mm10 released mild to moderate bottlenecking ENCFF730ZFE fastq reads ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 1334020507 Christina Leslie, MSKCC a864043a458fe448de841334335f7012 https://www.encodeproject.org/files/ENCFF730ZFE/@@download/ENCFF730ZFE.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF576FRV fastq reads ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 1927348725 Christina Leslie, MSKCC b09f2e4059cc70ee92000525dbf1fdd1 https://www.encodeproject.org/files/ENCFF576FRV/@@download/ENCFF576FRV.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF026ZWR bam alignments ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF576FRV 1330059044 Christina Leslie, MSKCC b169047bca7b44291545606adef88b37 https://www.encodeproject.org/files/ENCFF026ZWR/@@download/ENCFF026ZWR.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF608PYD bam alignments ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF730ZFE 899731156 Christina Leslie, MSKCC 659d74760c90f4af30c18224c52c2826 https://www.encodeproject.org/files/ENCFF608PYD/@@download/ENCFF608PYD.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF192SVJ tsv enrichment ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF608PYD, ENCFF608UQC 273923 Christina Leslie, MSKCC 5820086e3575ee1c273e10a36254e6d4 https://www.encodeproject.org/files/ENCFF192SVJ/@@download/ENCFF192SVJ.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF053WCC tsv enrichment ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF026ZWR, ENCFF608UQC 282297 Christina Leslie, MSKCC a43bfac43c54a94523337579fe78d67b https://www.encodeproject.org/files/ENCFF053WCC/@@download/ENCFF053WCC.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF047SIF fastq reads ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 2751390004 Christina Leslie, MSKCC e4a2b9d5b89ffdcaaab908235ce4193a https://www.encodeproject.org/files/ENCFF047SIF/@@download/ENCFF047SIF.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF341KMW fastq reads ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 2934128748 Christina Leslie, MSKCC eb7c813033db497ece66216e405c1855 https://www.encodeproject.org/files/ENCFF341KMW/@@download/ENCFF341KMW.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF216NSC bam alignments ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF047SIF 2085197561 Christina Leslie, MSKCC 460e96e14dd966b6b306a95be25b6d7e https://www.encodeproject.org/files/ENCFF216NSC/@@download/ENCFF216NSC.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF591DZZ bam alignments ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF341KMW 1928752906 Christina Leslie, MSKCC 38abc9e55e767e392ab22a66ef149e62 https://www.encodeproject.org/files/ENCFF591DZZ/@@download/ENCFF591DZZ.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF860KUG tsv enrichment ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF216NSC, ENCFF608UQC 267380 Christina Leslie, MSKCC 3d7250997a6f0786a41d1ca6eb51eebf https://www.encodeproject.org/files/ENCFF860KUG/@@download/ENCFF860KUG.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF735OOY tsv enrichment ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF591DZZ, ENCFF608UQC 266255 Christina Leslie, MSKCC e22ba3a73a15276dd32defb683736d86 https://www.encodeproject.org/files/ENCFF735OOY/@@download/ENCFF735OOY.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF001LHV bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIJ 219390311 Bing Ren, UCSD 5007b12f831953f4a5ebcf451f33b9cf https://www.encodeproject.org/files/ENCFF001LHV/@@download/ENCFF001LHV.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LHX bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIK 472072372 Bing Ren, UCSD b022a603a06ad6cfa375891e22fad992 https://www.encodeproject.org/files/ENCFF001LHX/@@download/ENCFF001LHX.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LHY bigBed broadPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAA 840259 Bing Ren, UCSD 8b19cfd4e6e49e1733d99c53721e1930 https://www.encodeproject.org/files/ENCFF001LHY/@@download/ENCFF001LHY.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LIA bigWig signal ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHV, ENCFF001LHX 61251149 Bing Ren, UCSD 7c9895c4b57cebc1da5f897017f95770 https://www.encodeproject.org/files/ENCFF001LIA/@@download/ENCFF001LIA.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LIJ fastq reads ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 841162261 Bing Ren, UCSD 20bf752c7fc880fa848a1eeee86352ef https://www.encodeproject.org/files/ENCFF001LIJ/@@download/ENCFF001LIJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KCX/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LIK fastq reads ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 812102450 Bing Ren, UCSD 8d761617311470deca8077439eb3fe15 https://www.encodeproject.org/files/ENCFF001LIK/@@download/ENCFF001LIK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KDF/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001YAA bed broadPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHV, ENCFF001LHX 518473 Bing Ren, UCSD 386e7970b88d3149685d612946a420f8 https://www.encodeproject.org/files/ENCFF001YAA/@@download/ENCFF001YAA.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF214WCM bam unfiltered alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 842772713 ENCODE Processing Pipeline ad09061204469466ba45e066d0867b43 https://www.encodeproject.org/files/ENCFF214WCM/@@download/ENCFF214WCM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF580NNY bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 238802631 ENCODE Processing Pipeline 3934281b6c25559c374873f08c087174 https://www.encodeproject.org/files/ENCFF580NNY/@@download/ENCFF580NNY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF557KUY bam unfiltered alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 834205647 ENCODE Processing Pipeline 9ee701ac86c72c8d1c1d5befba8a1ec7 https://www.encodeproject.org/files/ENCFF557KUY/@@download/ENCFF557KUY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF119HGR bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 299602650 ENCODE Processing Pipeline 60b05f6f90e9cc40e7b3119af7e14f4e https://www.encodeproject.org/files/ENCFF119HGR/@@download/ENCFF119HGR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF256ZSB bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 295806777 ENCODE Processing Pipeline a4bc61c71123e7dc40b93a04cabb28de https://www.encodeproject.org/files/ENCFF256ZSB/@@download/ENCFF256ZSB.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF234JEC bed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 1699120 ENCODE Processing Pipeline a45abfb7d69d92562ef6e52176b2b03e https://www.encodeproject.org/files/ENCFF234JEC/@@download/ENCFF234JEC.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF228WNF bigBed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF513QUA 4560277 ENCODE Processing Pipeline d2d751346697afe6a8bee205f8e372ca https://www.encodeproject.org/files/ENCFF228WNF/@@download/ENCFF228WNF.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF779CYW bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF034VZI 1002649 ENCODE Processing Pipeline 0407742043e2b4f9d22e0701be43a1fe https://www.encodeproject.org/files/ENCFF779CYW/@@download/ENCFF779CYW.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF508ODE bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 274680192 ENCODE Processing Pipeline 2bfe729bda0c28e797659349833f36e8 https://www.encodeproject.org/files/ENCFF508ODE/@@download/ENCFF508ODE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF853VHM bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 260563791 ENCODE Processing Pipeline f2760954d449838d85f31363a3b5b5c0 https://www.encodeproject.org/files/ENCFF853VHM/@@download/ENCFF853VHM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF416FSS bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 106719262 ENCODE Processing Pipeline 5e0404d339d7f13f033b6a1e8ab0b7a8 https://www.encodeproject.org/files/ENCFF416FSS/@@download/ENCFF416FSS.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF532YGA bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 140672455 ENCODE Processing Pipeline f0ff92867a19e185aaad2df826dfc589 https://www.encodeproject.org/files/ENCFF532YGA/@@download/ENCFF532YGA.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF513QUA bed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 2171433 ENCODE Processing Pipeline d43d911c4c068ab691618ca55a567c30 https://www.encodeproject.org/files/ENCFF513QUA/@@download/ENCFF513QUA.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF068IFU bed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 3872040 ENCODE Processing Pipeline 9a048d9e7aa729d1a316d676eeabbe6d https://www.encodeproject.org/files/ENCFF068IFU/@@download/ENCFF068IFU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF521IJB bigBed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU 9320363 ENCODE Processing Pipeline 6ae0ac219736ac39ae8b8014ac12744e https://www.encodeproject.org/files/ENCFF521IJB/@@download/ENCFF521IJB.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF154GFF bigBed narrowPeak peaks and background as input for IDR ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF234JEC 3446753 ENCODE Processing Pipeline 00cc76f0f8b2fa2f30d9c1795a5b9cbc https://www.encodeproject.org/files/ENCFF154GFF/@@download/ENCFF154GFF.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF057UOO bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 218543589 ENCODE Processing Pipeline f4415d6b589a38626a45ed08c803d2ad https://www.encodeproject.org/files/ENCFF057UOO/@@download/ENCFF057UOO.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF034VZI bed narrowPeak optimal idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU, ENCFF234JEC, ENCFF513QUA, ENCFF547MET 517919 ENCODE Processing Pipeline 4dcd43bc5a2693cb77a89aacd5d174b0 https://www.encodeproject.org/files/ENCFF034VZI/@@download/ENCFF034VZI.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF009PHO bed narrowPeak conservative idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU, ENCFF234JEC, ENCFF513QUA, ENCFF547MET 476982 ENCODE Processing Pipeline a7e6d3a72b37ca5cd79ccbf263e48f42 https://www.encodeproject.org/files/ENCFF009PHO/@@download/ENCFF009PHO.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF355UNA bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF009PHO 940835 ENCODE Processing Pipeline e59a85ed438b0e1dcaf14d49576d05b0 https://www.encodeproject.org/files/ENCFF355UNA/@@download/ENCFF355UNA.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF479WJA fastq reads ENCSR896QWJ ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 1536526226 Christina Leslie, MSKCC b898c9bfcb5a476997977ee286f85f6a https://www.encodeproject.org/files/ENCFF479WJA/@@download/ENCFF479WJA.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, missing donor missing controlled_by, unreplicated experiment ENCFF141MBL bam alignments ENCSR896QWJ ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF479WJA 1023406204 Christina Leslie, MSKCC 9b3869c39811f5b193356ba1ac1d850d https://www.encodeproject.org/files/ENCFF141MBL/@@download/ENCFF141MBL.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF698WSE tsv enrichment ENCSR896QWJ ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF141MBL, ENCFF608UQC 278738 Christina Leslie, MSKCC 36c1fdef6dee97178ab117e4a97630a3 https://www.encodeproject.org/files/ENCFF698WSE/@@download/ENCFF698WSE.tsv mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF077DLY fastq reads ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1191991931 Bing Ren, UCSD d8fee00745cd7269a501e9b3fa1bbf4b SRA:SRR3652521 https://www.encodeproject.org/files/ENCFF077DLY/@@download/ENCFF077DLY.fastq.gz Illumina HiSeq 4000 /files/ENCFF167BYV/, /files/ENCFF847CPG/ released moderate library complexity, mild to moderate bottlenecking ENCFF149TJE fastq reads ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 1600117612 Bing Ren, UCSD dac41fa8d5a84759b1ec1190bf356f4a SRA:SRR3652520 https://www.encodeproject.org/files/ENCFF149TJE/@@download/ENCFF149TJE.fastq.gz Illumina HiSeq 4000 /files/ENCFF803RGE/, /files/ENCFF832IQF/ released moderate library complexity, mild to moderate bottlenecking ENCFF654YMG bam alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF149TJE, ENCFF806TVZ 1038832853 ENCODE Processing Pipeline 40ca48d4228485c64aed28e9c2225b64 https://www.encodeproject.org/files/ENCFF654YMG/@@download/ENCFF654YMG.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF456AYS bam alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF077DLY, ENCFF806TVZ 903987674 ENCODE Processing Pipeline aa7759b455dadfef00611edfd1539e5d https://www.encodeproject.org/files/ENCFF456AYS/@@download/ENCFF456AYS.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF572ACB bigBed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF755BIE 3016083 ENCODE Processing Pipeline bdac863deec994ab2800e6bd758201ef https://www.encodeproject.org/files/ENCFF572ACB/@@download/ENCFF572ACB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF211CSR bed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF654YMG 1294790 ENCODE Processing Pipeline 08298863cae69f9a5aee429134cc439a https://www.encodeproject.org/files/ENCFF211CSR/@@download/ENCFF211CSR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF344YRF bed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF456AYS, ENCFF654YMG 1309776 ENCODE Processing Pipeline 9ebc133641eb216709f21385bb275a8b https://www.encodeproject.org/files/ENCFF344YRF/@@download/ENCFF344YRF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF809GXX bigBed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF211CSR 3658760 ENCODE Processing Pipeline d49f417a6080a299fb0b920ad2b9c288 https://www.encodeproject.org/files/ENCFF809GXX/@@download/ENCFF809GXX.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF755BIE bed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF456AYS 1050412 ENCODE Processing Pipeline 83e0ee22bc13017804a1f0caf8464f1b https://www.encodeproject.org/files/ENCFF755BIE/@@download/ENCFF755BIE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF268JQU bigBed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF344YRF 3536063 ENCODE Processing Pipeline 1852b2eb82074e6cac589c4785307129 https://www.encodeproject.org/files/ENCFF268JQU/@@download/ENCFF268JQU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF972GUM bigWig signal p-value ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF456AYS 565367873 ENCODE Processing Pipeline 93e73b18a633f5cf82e3822d9e84878a https://www.encodeproject.org/files/ENCFF972GUM/@@download/ENCFF972GUM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF584GYP bigWig signal p-value ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF654YMG 654722920 ENCODE Processing Pipeline e3cca1bbe69af10aa88217190d00f126 https://www.encodeproject.org/files/ENCFF584GYP/@@download/ENCFF584GYP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF536HDW bigWig signal p-value ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF456AYS, ENCFF654YMG 1060820483 ENCODE Processing Pipeline 098c3b3452b4fef80edfacc26ed1748f https://www.encodeproject.org/files/ENCFF536HDW/@@download/ENCFF536HDW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF995XBB bigWig fold change over control ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF120NRT, ENCFF456AYS 566682399 ENCODE Processing Pipeline 48815e7bd3e0a3fc97b3b01ecee3c987 https://www.encodeproject.org/files/ENCFF995XBB/@@download/ENCFF995XBB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF400XDU bigWig fold change over control ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF171GAD, ENCFF654YMG 609663689 ENCODE Processing Pipeline 18f2fa224f7e835b6a0c3b673e1deb54 https://www.encodeproject.org/files/ENCFF400XDU/@@download/ENCFF400XDU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF552WSG bigWig fold change over control ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF120NRT, ENCFF171GAD, ENCFF456AYS, ENCFF654YMG 1188346618 ENCODE Processing Pipeline 28a8cdc310bf231372df159b9a5396d3 https://www.encodeproject.org/files/ENCFF552WSG/@@download/ENCFF552WSG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF744JWA bigBed narrowPeak replicated peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF602AKM 1934521 ENCODE Processing Pipeline eeb0079d71cb241bf32953a90659d647 https://www.encodeproject.org/files/ENCFF744JWA/@@download/ENCFF744JWA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF602AKM bed narrowPeak replicated peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF211CSR, ENCFF344YRF, ENCFF755BIE 930264 ENCODE Processing Pipeline 7eb374a8c7db87bea8793e368238f5d2 https://www.encodeproject.org/files/ENCFF602AKM/@@download/ENCFF602AKM.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF211ONH bam unfiltered alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF149TJE 1930392193 ENCODE Processing Pipeline f8746d399a72a6327abb470f28149fe7 https://www.encodeproject.org/files/ENCFF211ONH/@@download/ENCFF211ONH.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF421PHH bam unfiltered alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF077DLY 1503547632 ENCODE Processing Pipeline ff00405f6bc8dc6bf8053aba118f46bf https://www.encodeproject.org/files/ENCFF421PHH/@@download/ENCFF421PHH.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF777WWT bam alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF077DLY 903801570 ENCODE Processing Pipeline 3d4ac3efe5d43538e176018f8ef497de https://www.encodeproject.org/files/ENCFF777WWT/@@download/ENCFF777WWT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF795RYB bam alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF149TJE 1038633043 ENCODE Processing Pipeline 5954845465d0a4f07019adf9be2b3699 https://www.encodeproject.org/files/ENCFF795RYB/@@download/ENCFF795RYB.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF635UDL bed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF777WWT, ENCFF865QGZ 1052509 ENCODE Processing Pipeline e21760c625d7eba09a39ea47ad91bc5b https://www.encodeproject.org/files/ENCFF635UDL/@@download/ENCFF635UDL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF049AIN bed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF795RYB 1295593 ENCODE Processing Pipeline c635152701ead185922f9de470369a59 https://www.encodeproject.org/files/ENCFF049AIN/@@download/ENCFF049AIN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF021WZG bed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF438RYK, ENCFF777WWT, ENCFF795RYB, ENCFF865QGZ 1309804 ENCODE Processing Pipeline 0fd032c8f180812c4c5fd583294c0836 https://www.encodeproject.org/files/ENCFF021WZG/@@download/ENCFF021WZG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF434IEK bigBed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF635UDL 3026043 ENCODE Processing Pipeline a2f1d75ec484232430ecbbc85d985700 https://www.encodeproject.org/files/ENCFF434IEK/@@download/ENCFF434IEK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF020THZ bigBed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF049AIN 3666674 ENCODE Processing Pipeline 1cfacb0c3248da27dbbe53d7c10a7ac5 https://www.encodeproject.org/files/ENCFF020THZ/@@download/ENCFF020THZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF843GVP bigBed narrowPeak peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF021WZG 3537504 ENCODE Processing Pipeline 9580dde98173764c64416c93b2aa445d https://www.encodeproject.org/files/ENCFF843GVP/@@download/ENCFF843GVP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF038GGS bigWig signal p-value ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF777WWT, ENCFF865QGZ 598356552 ENCODE Processing Pipeline 3281885d14d3cc97ab490aa87b91522a https://www.encodeproject.org/files/ENCFF038GGS/@@download/ENCFF038GGS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF649AEJ bigWig signal p-value ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF795RYB 657801990 ENCODE Processing Pipeline 8e772777777347872e0b5d4fa3c4e083 https://www.encodeproject.org/files/ENCFF649AEJ/@@download/ENCFF649AEJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF909KCU bigWig signal p-value ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF438RYK, ENCFF777WWT, ENCFF795RYB, ENCFF865QGZ 1104219004 ENCODE Processing Pipeline 12e3eda7e16bc372907a73cb7e5b6e7a https://www.encodeproject.org/files/ENCFF909KCU/@@download/ENCFF909KCU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF234WVX bigWig fold change over control ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF777WWT, ENCFF865QGZ 573976255 ENCODE Processing Pipeline 5a24769fe0871e82c3ce73405b92035e https://www.encodeproject.org/files/ENCFF234WVX/@@download/ENCFF234WVX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF569SEJ bigWig fold change over control ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF438RYK, ENCFF795RYB 611100900 ENCODE Processing Pipeline 5b4bfce5aaf55a843685d9dcc2e87b4b https://www.encodeproject.org/files/ENCFF569SEJ/@@download/ENCFF569SEJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF705MBY bigWig fold change over control ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF438RYK, ENCFF777WWT, ENCFF795RYB, ENCFF865QGZ 1188541623 ENCODE Processing Pipeline 48cfa9f563a50359f1550e87f35caba6 https://www.encodeproject.org/files/ENCFF705MBY/@@download/ENCFF705MBY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF598SZM bed narrowPeak replicated peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF021WZG, ENCFF049AIN, ENCFF635UDL 931812 ENCODE Processing Pipeline 3165dda6e606fbe6ca6541f0a0787f60 https://www.encodeproject.org/files/ENCFF598SZM/@@download/ENCFF598SZM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF723XWI bigBed narrowPeak replicated peaks ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF598SZM 1938558 ENCODE Processing Pipeline 52f709011b2aca98c11a0d470c120ab4 https://www.encodeproject.org/files/ENCFF723XWI/@@download/ENCFF723XWI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF223VEF fastq reads ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 2873341830 Bing Ren, UCSD 490ee5e112667002f3b428def0cb7f4a SRA:SRR3653270 https://www.encodeproject.org/files/ENCFF223VEF/@@download/ENCFF223VEF.fastq.gz Illumina HiSeq 4000 /files/ENCFF078PNM/, /files/ENCFF125ETQ/, /files/ENCFF202WAI/ released mild to moderate bottlenecking ENCFF714DNC fastq reads ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 2826830419 Bing Ren, UCSD 4962cd51e982d13bdd5396e871bc029d SRA:SRR3653271 https://www.encodeproject.org/files/ENCFF714DNC/@@download/ENCFF714DNC.fastq.gz Illumina HiSeq 4000 /files/ENCFF066LAE/, /files/ENCFF557BAE/ released mild to moderate bottlenecking ENCFF650YOU bam alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF223VEF, ENCFF806TVZ 2015683160 ENCODE Processing Pipeline 24a758496d215331564ef7debbdc6af3 https://www.encodeproject.org/files/ENCFF650YOU/@@download/ENCFF650YOU.bam mm10-minimal archived mild to moderate bottlenecking ENCFF778UPF bam alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF714DNC, ENCFF806TVZ 1916110060 ENCODE Processing Pipeline 814e6e08803cad0fe49159ecd896cc00 https://www.encodeproject.org/files/ENCFF778UPF/@@download/ENCFF778UPF.bam mm10-minimal archived mild to moderate bottlenecking ENCFF409EOY bigBed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF703HGQ 2065824 ENCODE Processing Pipeline 6ce633c0668d959ec83f1479d0cca3ac https://www.encodeproject.org/files/ENCFF409EOY/@@download/ENCFF409EOY.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF636HSL bed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF650YOU, ENCFF986JLW 822065 ENCODE Processing Pipeline 4affe1f95fe59e8119c1384ce195a5b6 https://www.encodeproject.org/files/ENCFF636HSL/@@download/ENCFF636HSL.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF703HGQ bed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF778UPF 992095 ENCODE Processing Pipeline 81ab869b8b7505bab71803a8a9c61aeb https://www.encodeproject.org/files/ENCFF703HGQ/@@download/ENCFF703HGQ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF008GPK bed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF650YOU, ENCFF778UPF, ENCFF986JLW 1459463 ENCODE Processing Pipeline 8f528ba3ee41daac3ca1663e62cec25f https://www.encodeproject.org/files/ENCFF008GPK/@@download/ENCFF008GPK.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF963HGB bigBed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF636HSL 1827951 ENCODE Processing Pipeline 1ef292a8c6484e7edec47934438d8c5c https://www.encodeproject.org/files/ENCFF963HGB/@@download/ENCFF963HGB.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF888WKT bigBed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF008GPK 3649482 ENCODE Processing Pipeline 7e84c76ec47b584647039561f0c68724 https://www.encodeproject.org/files/ENCFF888WKT/@@download/ENCFF888WKT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF282TDQ bigWig signal p-value ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF650YOU, ENCFF986JLW 1024481635 ENCODE Processing Pipeline 793496d4949a0f24a0f191fe6cc22cd8 https://www.encodeproject.org/files/ENCFF282TDQ/@@download/ENCFF282TDQ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF379WTL bigWig signal p-value ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF778UPF 890183871 ENCODE Processing Pipeline d35f68557d5416d69637083d2b0a3804 https://www.encodeproject.org/files/ENCFF379WTL/@@download/ENCFF379WTL.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF517EXN bigWig signal p-value ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF650YOU, ENCFF778UPF, ENCFF986JLW 1257304176 ENCODE Processing Pipeline 72b2d3c4bdb0c937bb29dd453fc8b0ba https://www.encodeproject.org/files/ENCFF517EXN/@@download/ENCFF517EXN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF312TPI bigWig fold change over control ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF405EMM, ENCFF650YOU, ENCFF986JLW 1096194855 ENCODE Processing Pipeline 96bb8a5e1506faa45ea7daf074a695eb https://www.encodeproject.org/files/ENCFF312TPI/@@download/ENCFF312TPI.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF951FYA bigWig fold change over control ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF405EMM, ENCFF778UPF 885648746 ENCODE Processing Pipeline 33592d96648a8a75b17e06776c1f7d5b https://www.encodeproject.org/files/ENCFF951FYA/@@download/ENCFF951FYA.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF992NGR bigWig fold change over control ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405EMM, ENCFF650YOU, ENCFF778UPF, ENCFF986JLW 1591134346 ENCODE Processing Pipeline 23d60d632aa8eceeb0e9d3b521aa2d3d https://www.encodeproject.org/files/ENCFF992NGR/@@download/ENCFF992NGR.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF405ZDP bed narrowPeak replicated peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF008GPK, ENCFF636HSL, ENCFF703HGQ 540728 ENCODE Processing Pipeline 3c7b4b57b69ab7f548937db0429cf583 https://www.encodeproject.org/files/ENCFF405ZDP/@@download/ENCFF405ZDP.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF184CYT bigBed narrowPeak replicated peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF405ZDP 1294241 ENCODE Processing Pipeline 0406ffc82dd258d063d5e62437641e8e https://www.encodeproject.org/files/ENCFF184CYT/@@download/ENCFF184CYT.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF534GWI bam unfiltered alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF223VEF 3813461616 ENCODE Processing Pipeline 8a0091d8fda9d008cb413ae79662aee0 https://www.encodeproject.org/files/ENCFF534GWI/@@download/ENCFF534GWI.bam mm10 released mild to moderate bottlenecking ENCFF279FZJ bam unfiltered alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF714DNC 3780112959 ENCODE Processing Pipeline b61642ffd9a155e1c70fcaf2721bcb45 https://www.encodeproject.org/files/ENCFF279FZJ/@@download/ENCFF279FZJ.bam mm10 released mild to moderate bottlenecking ENCFF316FVW bam alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF714DNC 1915562282 ENCODE Processing Pipeline c792ee52543ce8043937647bb7f9a009 https://www.encodeproject.org/files/ENCFF316FVW/@@download/ENCFF316FVW.bam mm10 released mild to moderate bottlenecking ENCFF051RLR bam alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF223VEF 2015088077 ENCODE Processing Pipeline 42c956b2f4bf71749dfd1387282e37f4 https://www.encodeproject.org/files/ENCFF051RLR/@@download/ENCFF051RLR.bam mm10 released mild to moderate bottlenecking ENCFF887UYX bed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF051RLR, ENCFF316FVW, ENCFF614XRG, ENCFF970FNZ 1308765 ENCODE Processing Pipeline dce311c3e15369d0aabe5d5f7f70597a https://www.encodeproject.org/files/ENCFF887UYX/@@download/ENCFF887UYX.bed.gz mm10 released mild to moderate bottlenecking ENCFF960AJK bigBed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF887UYX 3295637 ENCODE Processing Pipeline ac7bb22df6aae8427f407da03f3c0ec0 https://www.encodeproject.org/files/ENCFF960AJK/@@download/ENCFF960AJK.bigBed mm10 released mild to moderate bottlenecking ENCFF556VXE bigBed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF924EPU 2071886 ENCODE Processing Pipeline 63a144effafa0b4c7763e7cb9be1aec8 https://www.encodeproject.org/files/ENCFF556VXE/@@download/ENCFF556VXE.bigBed mm10 released mild to moderate bottlenecking ENCFF924EPU bed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF316FVW, ENCFF614XRG 994149 ENCODE Processing Pipeline 85f64d9d9c46132a3e496b247c96dc20 https://www.encodeproject.org/files/ENCFF924EPU/@@download/ENCFF924EPU.bed.gz mm10 released mild to moderate bottlenecking ENCFF285DLL bigBed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF223GRE 2054777 ENCODE Processing Pipeline 1c34adc9e3f6a7e4703e52fdca819f97 https://www.encodeproject.org/files/ENCFF285DLL/@@download/ENCFF285DLL.bigBed mm10 released mild to moderate bottlenecking ENCFF223GRE bed narrowPeak peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF051RLR, ENCFF614XRG, ENCFF970FNZ 955061 ENCODE Processing Pipeline 48503ee56bc2749005da501b054a5dba https://www.encodeproject.org/files/ENCFF223GRE/@@download/ENCFF223GRE.bed.gz mm10 released mild to moderate bottlenecking ENCFF128CDP bigWig signal p-value ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF051RLR, ENCFF614XRG, ENCFF970FNZ 1030197635 ENCODE Processing Pipeline eaa8e43006923789d27d254b06db9088 https://www.encodeproject.org/files/ENCFF128CDP/@@download/ENCFF128CDP.bigWig mm10 released mild to moderate bottlenecking ENCFF723TCH bigWig signal p-value ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF051RLR, ENCFF316FVW, ENCFF614XRG, ENCFF970FNZ 1353805419 ENCODE Processing Pipeline c820f345b0651fe6c16043251c389254 https://www.encodeproject.org/files/ENCFF723TCH/@@download/ENCFF723TCH.bigWig mm10 released mild to moderate bottlenecking ENCFF040RZJ bigWig signal p-value ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF316FVW, ENCFF614XRG 789448292 ENCODE Processing Pipeline e2617ea7f9cc73579a6bba4f30bf9a2b https://www.encodeproject.org/files/ENCFF040RZJ/@@download/ENCFF040RZJ.bigWig mm10 released mild to moderate bottlenecking ENCFF063KUI bigWig fold change over control ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF051RLR, ENCFF614XRG, ENCFF970FNZ 1079604372 ENCODE Processing Pipeline 72ac6561b6a2746d6ab30f0cd21e101f https://www.encodeproject.org/files/ENCFF063KUI/@@download/ENCFF063KUI.bigWig mm10 released mild to moderate bottlenecking ENCFF887ZRE bigWig fold change over control ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF316FVW, ENCFF614XRG 891393197 ENCODE Processing Pipeline 4ad9eac5ed8a420ed03600251ddac05d https://www.encodeproject.org/files/ENCFF887ZRE/@@download/ENCFF887ZRE.bigWig mm10 released mild to moderate bottlenecking ENCFF123AIK bigBed narrowPeak replicated peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF670WBI 1358085 ENCODE Processing Pipeline 947b62e61b1970f4130e8edcf621c438 https://www.encodeproject.org/files/ENCFF123AIK/@@download/ENCFF123AIK.bigBed mm10 released mild to moderate bottlenecking ENCFF197JHX bigWig fold change over control ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF051RLR, ENCFF316FVW, ENCFF614XRG, ENCFF970FNZ 1551218974 ENCODE Processing Pipeline d6a12c424f979196ae6b6d97ba6403ef https://www.encodeproject.org/files/ENCFF197JHX/@@download/ENCFF197JHX.bigWig mm10 released mild to moderate bottlenecking ENCFF670WBI bed narrowPeak replicated peaks ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF223GRE, ENCFF887UYX, ENCFF924EPU 570049 ENCODE Processing Pipeline 39434d7172a7d37ab94e85a8215df950 https://www.encodeproject.org/files/ENCFF670WBI/@@download/ENCFF670WBI.bed.gz mm10 released mild to moderate bottlenecking ENCFF001MOW bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MOZ 829407021 Ross Hardison, PennState 58040ef0e8ffe759853a9c12d65079c4 https://www.encodeproject.org/files/ENCFF001MOW/@@download/ENCFF001MOW.bam mm9 archived low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001MOX bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MPE 896720299 Ross Hardison, PennState 2d13c2efc363be94c686c560c7d93178 https://www.encodeproject.org/files/ENCFF001MOX/@@download/ENCFF001MOX.bam mm9 archived low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001MOY bigBed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFD 714620 Ross Hardison, PennState 25a83e0de0050c40140f026af413cafc https://www.encodeproject.org/files/ENCFF001MOY/@@download/ENCFF001MOY.bigBed mm9 archived low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001MOZ fastq reads ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 656384502 Ross Hardison, PennState bfb161fce38c72de2613b2fbb270215a https://www.encodeproject.org/files/ENCFF001MOZ/@@download/ENCFF001MOZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001MPA bigBed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFE 1706252 Ross Hardison, PennState 8df6f1f72008831d7f830476fbc5c40d https://www.encodeproject.org/files/ENCFF001MPA/@@download/ENCFF001MPA.bigBed mm9 archived low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001MPB bigBed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFF 520211 Ross Hardison, PennState 0a6307aafe12baf8e9c227a9504a4339 https://www.encodeproject.org/files/ENCFF001MPB/@@download/ENCFF001MPB.bigBed mm9 archived low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001MPC bigWig signal ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2317699789 Ross Hardison, PennState 122acd32cb5f5d704bcf587189ea2fca https://www.encodeproject.org/files/ENCFF001MPC/@@download/ENCFF001MPC.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001MPD bigWig signal ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 2789862133 Ross Hardison, PennState 7678396218ca6d5703d4a1e5d2de22e9 https://www.encodeproject.org/files/ENCFF001MPD/@@download/ENCFF001MPD.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001MPE fastq reads ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 756936913 Ross Hardison, PennState b775d7cede438636de04c28dd1105d5b https://www.encodeproject.org/files/ENCFF001MPE/@@download/ENCFF001MPE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released low read length, inconsistent platforms, inconsistent control read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001MPF bigWig signal ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 4388332479 Ross Hardison, PennState b38ba86773f35c42810db72c095ef328 https://www.encodeproject.org/files/ENCFF001MPF/@@download/ENCFF001MPF.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001YFD bed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 435407 Ross Hardison, PennState 5d1618a7703ec902942e8c2e6ed73677 https://www.encodeproject.org/files/ENCFF001YFD/@@download/ENCFF001YFD.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001YFE bed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1112507 Ross Hardison, PennState d1aee42fbf4876a5afabb5c3ae428057 https://www.encodeproject.org/files/ENCFF001YFE/@@download/ENCFF001YFE.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001YFF bed broadPeak peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 215721 Ross Hardison, PennState cd17516a819ef7f30b2e7cf12693fb68 https://www.encodeproject.org/files/ENCFF001YFF/@@download/ENCFF001YFF.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF309UTY bam unfiltered alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPE, ENCFF018NEO 957575364 ENCODE Processing Pipeline 244b3c9d5c33c8b6750d881826e7a439 https://www.encodeproject.org/files/ENCFF309UTY/@@download/ENCFF309UTY.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF838GTP bam unfiltered alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOZ, ENCFF018NEO 867666146 ENCODE Processing Pipeline acb9c8ecde15c72982d9e26cf780ad7a https://www.encodeproject.org/files/ENCFF838GTP/@@download/ENCFF838GTP.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF489IXK bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPE, ENCFF018NEO 683706521 ENCODE Processing Pipeline ff41985420ab1869a31e5b154555ca56 https://www.encodeproject.org/files/ENCFF489IXK/@@download/ENCFF489IXK.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF629YOP bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOZ, ENCFF018NEO 602674955 ENCODE Processing Pipeline 0cf452b42775ff1ef5840b8659d56602 https://www.encodeproject.org/files/ENCFF629YOP/@@download/ENCFF629YOP.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF551YBY bigWig signal p-value ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF629YOP, ENCFF984QUA 816732980 ENCODE Processing Pipeline 30d51f8fe00e96a79b0d0e47525c181d https://www.encodeproject.org/files/ENCFF551YBY/@@download/ENCFF551YBY.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF316ALF bigWig signal p-value ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF489IXK, ENCFF984QUA 853739979 ENCODE Processing Pipeline 4769e99265c45c8246f6f5fdbe19bcae https://www.encodeproject.org/files/ENCFF316ALF/@@download/ENCFF316ALF.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF425FZT bigWig fold change over control ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF629YOP, ENCFF984QUA 560029191 ENCODE Processing Pipeline cbb43101211ef26006ce84d35b1172c7 https://www.encodeproject.org/files/ENCFF425FZT/@@download/ENCFF425FZT.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF561RBC bigWig fold change over control ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF489IXK, ENCFF629YOP, ENCFF984QUA 991012850 ENCODE Processing Pipeline 1946a0e0a532fdb29c2dfe539076fa1a https://www.encodeproject.org/files/ENCFF561RBC/@@download/ENCFF561RBC.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF053QAT bigWig fold change over control ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF489IXK, ENCFF984QUA 687863077 ENCODE Processing Pipeline 2949389041d27875328668a7c9bba2f8 https://www.encodeproject.org/files/ENCFF053QAT/@@download/ENCFF053QAT.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF369HHX bigWig signal p-value ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF489IXK, ENCFF629YOP, ENCFF984QUA 968515618 ENCODE Processing Pipeline 54978dfb720a4a5dbb6267fdecdd1c02 https://www.encodeproject.org/files/ENCFF369HHX/@@download/ENCFF369HHX.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF503DPU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF146QJC 131927 ENCODE Processing Pipeline 04669896176d13edae1b8c4993e3d8c4 https://www.encodeproject.org/files/ENCFF503DPU/@@download/ENCFF503DPU.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF835XEQ bed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF629YOP, ENCFF984QUA 6365795 ENCODE Processing Pipeline 37ea75ff9255eea15b095dcfd1c653a7 https://www.encodeproject.org/files/ENCFF835XEQ/@@download/ENCFF835XEQ.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF734UDF bigBed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF517GSF 12531127 ENCODE Processing Pipeline 4cc6ae4ac7d571b0874e8bdfc54337cb https://www.encodeproject.org/files/ENCFF734UDF/@@download/ENCFF734UDF.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF146QJC bed narrowPeak conservative idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF380TVB, ENCFF517GSF, ENCFF547MET, ENCFF835XEQ 18022 ENCODE Processing Pipeline 23cd7cf8ef173ed201428984bfad7158 https://www.encodeproject.org/files/ENCFF146QJC/@@download/ENCFF146QJC.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF380TVB bed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF489IXK, ENCFF629YOP, ENCFF984QUA 7090907 ENCODE Processing Pipeline 3015c24b7cb6def68d3df178051f785a https://www.encodeproject.org/files/ENCFF380TVB/@@download/ENCFF380TVB.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF144QXM bigBed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF835XEQ 12245721 ENCODE Processing Pipeline fc59301bdbcd4ef69bd67074df7e9ba2 https://www.encodeproject.org/files/ENCFF144QXM/@@download/ENCFF144QXM.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF517GSF bed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF489IXK, ENCFF984QUA 6995060 ENCODE Processing Pipeline 2be00a5d3452552c8878eb0437812154 https://www.encodeproject.org/files/ENCFF517GSF/@@download/ENCFF517GSF.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF853HEV bigBed narrowPeak peaks and background as input for IDR ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF380TVB 12601694 ENCODE Processing Pipeline 5d4a883056c38d55f5e936fe1e533c9e https://www.encodeproject.org/files/ENCFF853HEV/@@download/ENCFF853HEV.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF495VWK bed narrowPeak optimal idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF380TVB, ENCFF517GSF, ENCFF547MET, ENCFF835XEQ 61626 ENCODE Processing Pipeline 05cee7428b0ab274f03608505df72b30 https://www.encodeproject.org/files/ENCFF495VWK/@@download/ENCFF495VWK.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF811GWR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF495VWK 215904 ENCODE Processing Pipeline 120889be834abab8ba3c244de8dd913c https://www.encodeproject.org/files/ENCFF811GWR/@@download/ENCFF811GWR.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF989ZJZ fastq reads ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 2265834550 Bing Ren, UCSD a738b542ff0208a2092ba5f3cb652dd6 SRA:SRR3653134 https://www.encodeproject.org/files/ENCFF989ZJZ/@@download/ENCFF989ZJZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/ released inconsistent platforms ENCFF451SVW fastq reads ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 1951912345 Bing Ren, UCSD 11ccb1cc0af867232fcdaede549192ac SRA:SRR3653135 https://www.encodeproject.org/files/ENCFF451SVW/@@download/ENCFF451SVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released inconsistent platforms ENCFF657MPB bam alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF806TVZ, ENCFF989ZJZ 1509030169 ENCODE Processing Pipeline 1cddbfb836a4551c942d1b5199ddd144 https://www.encodeproject.org/files/ENCFF657MPB/@@download/ENCFF657MPB.bam mm10-minimal archived inconsistent platforms ENCFF263PKV bam alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF451SVW, ENCFF806TVZ 1242495119 ENCODE Processing Pipeline b4b178e6078eeea64b5d634b09bb6d14 https://www.encodeproject.org/files/ENCFF263PKV/@@download/ENCFF263PKV.bam mm10-minimal archived inconsistent platforms ENCFF811FSW bed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF081EMS, ENCFF263PKV, ENCFF881FJP 615691 ENCODE Processing Pipeline b5b3a839e055105ec944f0a7e54ac1c8 https://www.encodeproject.org/files/ENCFF811FSW/@@download/ENCFF811FSW.bed.gz mm10-minimal archived inconsistent platforms ENCFF481MWK bed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF081EMS, ENCFF657MPB, ENCFF881FJP 555393 ENCODE Processing Pipeline 75e1269f3f71761e9edaf0391c633fa1 https://www.encodeproject.org/files/ENCFF481MWK/@@download/ENCFF481MWK.bed.gz mm10-minimal archived inconsistent platforms ENCFF380YLB bigBed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF481MWK 1085113 ENCODE Processing Pipeline 3c6be9dc941d1ab7b38313f4c7e48b26 https://www.encodeproject.org/files/ENCFF380YLB/@@download/ENCFF380YLB.bigBed mm10-minimal archived inconsistent platforms ENCFF167BPK bigWig signal p-value ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF081EMS, ENCFF263PKV, ENCFF881FJP 754291684 ENCODE Processing Pipeline 38136177272bc476a5eb2f4f62736c67 https://www.encodeproject.org/files/ENCFF167BPK/@@download/ENCFF167BPK.bigWig mm10-minimal archived inconsistent platforms ENCFF797OAM bigBed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF795PXB 1418428 ENCODE Processing Pipeline 1a9b6f812a8c8f2161661faba749199e https://www.encodeproject.org/files/ENCFF797OAM/@@download/ENCFF797OAM.bigBed mm10-minimal archived inconsistent platforms ENCFF795PXB bed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF081EMS, ENCFF263PKV, ENCFF657MPB, ENCFF881FJP 606071 ENCODE Processing Pipeline 5a4daad510b576cf5bdcf3929d44a6f7 https://www.encodeproject.org/files/ENCFF795PXB/@@download/ENCFF795PXB.bed.gz mm10-minimal archived inconsistent platforms ENCFF273VQW bigBed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF811FSW 1146621 ENCODE Processing Pipeline 4939ee2cab1231feb699bcf2cf71a9a6 https://www.encodeproject.org/files/ENCFF273VQW/@@download/ENCFF273VQW.bigBed mm10-minimal archived inconsistent platforms ENCFF282GWU bigWig signal p-value ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF081EMS, ENCFF657MPB, ENCFF881FJP 893641631 ENCODE Processing Pipeline 3992708de9bc424970b080406f0ad7ae https://www.encodeproject.org/files/ENCFF282GWU/@@download/ENCFF282GWU.bigWig mm10-minimal archived inconsistent platforms ENCFF980PHY bigWig fold change over control ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF081EMS, ENCFF263PKV, ENCFF881FJP 749678345 ENCODE Processing Pipeline 50322bc25ff5d500e715c42e9460f351 https://www.encodeproject.org/files/ENCFF980PHY/@@download/ENCFF980PHY.bigWig mm10-minimal archived inconsistent platforms ENCFF986EWE bigWig fold change over control ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF081EMS, ENCFF657MPB, ENCFF881FJP 870336740 ENCODE Processing Pipeline e89c3fb758e7491517d9f7e9654c6bbf https://www.encodeproject.org/files/ENCFF986EWE/@@download/ENCFF986EWE.bigWig mm10-minimal archived inconsistent platforms ENCFF755HDL bigWig signal p-value ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF081EMS, ENCFF263PKV, ENCFF657MPB, ENCFF881FJP 1153832528 ENCODE Processing Pipeline adfab217cbed8b54244922f1bc8385a7 https://www.encodeproject.org/files/ENCFF755HDL/@@download/ENCFF755HDL.bigWig mm10-minimal archived inconsistent platforms ENCFF745KPD bed narrowPeak replicated peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF481MWK, ENCFF795PXB, ENCFF811FSW 130050 ENCODE Processing Pipeline 323663fc27af4e53cabc6dfeeb69d3a6 https://www.encodeproject.org/files/ENCFF745KPD/@@download/ENCFF745KPD.bed.gz mm10-minimal archived inconsistent platforms ENCFF293FZQ bigBed narrowPeak replicated peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF745KPD 311763 ENCODE Processing Pipeline 8700624a4f8410406ad24b20b106aed0 https://www.encodeproject.org/files/ENCFF293FZQ/@@download/ENCFF293FZQ.bigBed mm10-minimal archived inconsistent platforms ENCFF189HMZ bigWig fold change over control ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF081EMS, ENCFF263PKV, ENCFF657MPB, ENCFF881FJP 1178493507 ENCODE Processing Pipeline 8b26d0deb234cc03298e7446e6a948ca https://www.encodeproject.org/files/ENCFF189HMZ/@@download/ENCFF189HMZ.bigWig mm10-minimal archived inconsistent platforms ENCFF456IOM bam unfiltered alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF451SVW 2378512631 ENCODE Processing Pipeline 888cafce069013ee8929971233ee7ab1 https://www.encodeproject.org/files/ENCFF456IOM/@@download/ENCFF456IOM.bam mm10 released inconsistent platforms ENCFF109UJK bam unfiltered alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF989ZJZ 2764791798 ENCODE Processing Pipeline 752d04612ac031d3c3cc4237c8c71e1e https://www.encodeproject.org/files/ENCFF109UJK/@@download/ENCFF109UJK.bam mm10 released inconsistent platforms ENCFF477WQY bam alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF451SVW 1242006810 ENCODE Processing Pipeline 5be4e47211f8200a96c9ab8d90d3f771 https://www.encodeproject.org/files/ENCFF477WQY/@@download/ENCFF477WQY.bam mm10 released inconsistent platforms ENCFF858QZZ bam alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF989ZJZ 1508491886 ENCODE Processing Pipeline 3371be0c74133b5688ae4d803dbe2603 https://www.encodeproject.org/files/ENCFF858QZZ/@@download/ENCFF858QZZ.bam mm10 released inconsistent platforms ENCFF589DVG bed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF209HPI, ENCFF477WQY, ENCFF634NAV 585845 ENCODE Processing Pipeline c93ddc19be1d4c94fd5b2d07ea9787d1 https://www.encodeproject.org/files/ENCFF589DVG/@@download/ENCFF589DVG.bed.gz mm10 released inconsistent platforms ENCFF398SZV bed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF209HPI, ENCFF477WQY, ENCFF634NAV, ENCFF858QZZ 557421 ENCODE Processing Pipeline 4ffe96908bcfa4a2464d417586555ac6 https://www.encodeproject.org/files/ENCFF398SZV/@@download/ENCFF398SZV.bed.gz mm10 released inconsistent platforms ENCFF179ISC bed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF858QZZ 628163 ENCODE Processing Pipeline 5ae89b5899a10f8a4ce77ec85d8b5375 https://www.encodeproject.org/files/ENCFF179ISC/@@download/ENCFF179ISC.bed.gz mm10 released inconsistent platforms ENCFF487SFG bigBed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF589DVG 1108569 ENCODE Processing Pipeline 1964ef8eb2b6dac602718470471bf338 https://www.encodeproject.org/files/ENCFF487SFG/@@download/ENCFF487SFG.bigBed mm10 released inconsistent platforms ENCFF044MOU bigBed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF179ISC 1184717 ENCODE Processing Pipeline 8b1f24e53f95db67ea12b190d8362bb6 https://www.encodeproject.org/files/ENCFF044MOU/@@download/ENCFF044MOU.bigBed mm10 released inconsistent platforms ENCFF702UOW bigBed narrowPeak peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF398SZV 1336185 ENCODE Processing Pipeline 281b358abac147ce1785e477a6623d70 https://www.encodeproject.org/files/ENCFF702UOW/@@download/ENCFF702UOW.bigBed mm10 released inconsistent platforms ENCFF928ETN bigWig signal p-value ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF209HPI, ENCFF477WQY, ENCFF634NAV 864639974 ENCODE Processing Pipeline aa11792a4e6a3f13545f54ef23547642 https://www.encodeproject.org/files/ENCFF928ETN/@@download/ENCFF928ETN.bigWig mm10 released inconsistent platforms ENCFF346NRT bigWig signal p-value ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF858QZZ 866417125 ENCODE Processing Pipeline ebcdea4e997ea09c1b1cc815cff5444a https://www.encodeproject.org/files/ENCFF346NRT/@@download/ENCFF346NRT.bigWig mm10 released inconsistent platforms ENCFF175WTX bigWig signal p-value ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF209HPI, ENCFF477WQY, ENCFF634NAV, ENCFF858QZZ 1165399047 ENCODE Processing Pipeline 76d9928ba8234e9c9303066d0c7b9bcc https://www.encodeproject.org/files/ENCFF175WTX/@@download/ENCFF175WTX.bigWig mm10 released inconsistent platforms ENCFF871VQG bigWig fold change over control ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF209HPI, ENCFF477WQY, ENCFF634NAV 800424197 ENCODE Processing Pipeline 9f439456f8b236030991dd53e28a4a8a https://www.encodeproject.org/files/ENCFF871VQG/@@download/ENCFF871VQG.bigWig mm10 released inconsistent platforms ENCFF379CZG bigWig fold change over control ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF858QZZ 902268356 ENCODE Processing Pipeline cc748467f23497346bfbf5c5b68d8060 https://www.encodeproject.org/files/ENCFF379CZG/@@download/ENCFF379CZG.bigWig mm10 released inconsistent platforms ENCFF550PJQ bigWig fold change over control ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF209HPI, ENCFF477WQY, ENCFF634NAV, ENCFF858QZZ 1228175932 ENCODE Processing Pipeline 79bfabb7da8903de773569e053c68d3e https://www.encodeproject.org/files/ENCFF550PJQ/@@download/ENCFF550PJQ.bigWig mm10 released inconsistent platforms ENCFF210HCC bed narrowPeak replicated peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF179ISC, ENCFF398SZV, ENCFF589DVG 97347 ENCODE Processing Pipeline d1979c88f1bd6b2c84977f6b86c73279 https://www.encodeproject.org/files/ENCFF210HCC/@@download/ENCFF210HCC.bed.gz mm10 released inconsistent platforms ENCFF357AOT bigBed narrowPeak replicated peaks ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF210HCC 308481 ENCODE Processing Pipeline f5ad833fb0e90b6a6129961652ebf71c https://www.encodeproject.org/files/ENCFF357AOT/@@download/ENCFF357AOT.bigBed mm10 released inconsistent platforms ENCFF001MPS bigBed broadPeak peaks ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFJ 501928 Ross Hardison, PennState 729bbb5ad9abad8894666d1bf293b772 https://www.encodeproject.org/files/ENCFF001MPS/@@download/ENCFF001MPS.bigBed mm9 released mild to moderate bottlenecking ENCFF001MPT bam alignments ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MPX 3081618365 Ross Hardison, PennState 6b3dcb69b9d3296c995660e4310e482a https://www.encodeproject.org/files/ENCFF001MPT/@@download/ENCFF001MPT.bam mm9 released mild to moderate bottlenecking ENCFF001MPU bigWig signal ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4554135425 Ross Hardison, PennState f6d36a691169d47b280dd9e72333b204 https://www.encodeproject.org/files/ENCFF001MPU/@@download/ENCFF001MPU.bigWig mm9 released mild to moderate bottlenecking missing derived_from ENCFF001MPX fastq reads ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 55 single-ended 2676872071 Ross Hardison, PennState fc2b4c358006823c419c9f12dc20fc08 https://www.encodeproject.org/files/ENCFF001MPX/@@download/ENCFF001MPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MQW/ released mild to moderate bottlenecking, inconsistent control read length ENCFF001YFJ bed broadPeak peaks ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 213679 Ross Hardison, PennState 75330ba3fa7d7560c54e2b52658f63ef https://www.encodeproject.org/files/ENCFF001YFJ/@@download/ENCFF001YFJ.bed.gz mm9 released mild to moderate bottlenecking missing derived_from ENCFF932KNT bam unfiltered alignments ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MPX, ENCFF018NEO 2919002318 ENCODE Processing Pipeline cc9fdb9708faeb1639b87b6e4ec7fe85 https://www.encodeproject.org/files/ENCFF932KNT/@@download/ENCFF932KNT.bam mm10 released mild to moderate bottlenecking ENCFF503ZWH bam alignments ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MPX, ENCFF018NEO 1952467096 ENCODE Processing Pipeline c0480c609445622dced72b743f6764ff https://www.encodeproject.org/files/ENCFF503ZWH/@@download/ENCFF503ZWH.bam mm10 released mild to moderate bottlenecking ENCFF001KUL bam alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KUS 424078488 Bing Ren, UCSD 6354aa1b12fc6a3b0726ff98257e96e7 https://www.encodeproject.org/files/ENCFF001KUL/@@download/ENCFF001KUL.bam mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KUN bigBed broadPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYZ 618060 Bing Ren, UCSD c018b05e1ec00f48a9c8aaf45288be98 https://www.encodeproject.org/files/ENCFF001KUN/@@download/ENCFF001KUN.bigBed mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KUO bam alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KUW 508941036 Bing Ren, UCSD dffee869ec6ce5749fe91e1cf164269e https://www.encodeproject.org/files/ENCFF001KUO/@@download/ENCFF001KUO.bam mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KUQ bigWig signal ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KUL, ENCFF001KUO 60686333 Bing Ren, UCSD 836deba844aa72d564ee283a1924eadb https://www.encodeproject.org/files/ENCFF001KUQ/@@download/ENCFF001KUQ.bigWig mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KUS fastq reads ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 408333448 Bing Ren, UCSD 99dd63e4316925acd3fba32f3d17ef10 https://www.encodeproject.org/files/ENCFF001KUS/@@download/ENCFF001KUS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KVR/ released low read length, inconsistent platforms insufficient read depth ENCFF001KUW fastq reads ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 488759041 Bing Ren, UCSD 0741f3cbdd18cc13e25709b1fabc9d9c https://www.encodeproject.org/files/ENCFF001KUW/@@download/ENCFF001KUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KWE/ released low read length, inconsistent platforms, inconsistent control read length insufficient read depth ENCFF001XYZ bed broadPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KUL, ENCFF001KUO 385857 Bing Ren, UCSD 9f6bf8240dc7e332626ab30af3769bec https://www.encodeproject.org/files/ENCFF001XYZ/@@download/ENCFF001XYZ.bed.gz mm9 released low read length, inconsistent platforms insufficient read depth ENCFF034ABS bam unfiltered alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KUS, ENCFF018NEO 418906412 ENCODE Processing Pipeline 7411ebd66703555ff48d1031df822464 https://www.encodeproject.org/files/ENCFF034ABS/@@download/ENCFF034ABS.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF868ZCZ bam alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KUS, ENCFF018NEO 299039137 ENCODE Processing Pipeline c4f0ca56e98cc15f468bf5425d12e3b1 https://www.encodeproject.org/files/ENCFF868ZCZ/@@download/ENCFF868ZCZ.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF485HOH bam alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KUW, ENCFF018NEO 363540053 ENCODE Processing Pipeline 3f700373cdcc726f805983201b7c42aa https://www.encodeproject.org/files/ENCFF485HOH/@@download/ENCFF485HOH.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF142ETN bam unfiltered alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KUW, ENCFF018NEO 508903588 ENCODE Processing Pipeline 4b1e92050f726c5a93489b84dace9d70 https://www.encodeproject.org/files/ENCFF142ETN/@@download/ENCFF142ETN.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF092BMP bed narrowPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF868ZCZ 1388172 ENCODE Processing Pipeline 39dddf76851f3686c80b242f576d6991 https://www.encodeproject.org/files/ENCFF092BMP/@@download/ENCFF092BMP.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF368OJO bigBed narrowPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF092BMP 3936038 ENCODE Processing Pipeline 355ee9720d76caa522e355062326e62e https://www.encodeproject.org/files/ENCFF368OJO/@@download/ENCFF368OJO.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF034UEX bigWig signal p-value ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF314OGN, ENCFF485HOH, ENCFF705BZU 447246000 ENCODE Processing Pipeline fdd61963de279ef636d99af9388715a3 https://www.encodeproject.org/files/ENCFF034UEX/@@download/ENCFF034UEX.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF618CFV bigWig fold change over control ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF868ZCZ 232158115 ENCODE Processing Pipeline a8f4fbbcf786de7c647f3aa087075ac8 https://www.encodeproject.org/files/ENCFF618CFV/@@download/ENCFF618CFV.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF429UGB bed narrowPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF314OGN, ENCFF485HOH, ENCFF705BZU 1281818 ENCODE Processing Pipeline 46e9fc88976ea66696daa90445b488dc https://www.encodeproject.org/files/ENCFF429UGB/@@download/ENCFF429UGB.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF944LTU bed narrowPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF314OGN, ENCFF485HOH, ENCFF705BZU, ENCFF868ZCZ 1459505 ENCODE Processing Pipeline ad6d7b976fef1cc3a9c75717e091bf46 https://www.encodeproject.org/files/ENCFF944LTU/@@download/ENCFF944LTU.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF583WOJ bigBed narrowPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF429UGB 3572329 ENCODE Processing Pipeline 81edc64a241d01364c87425d0c4293f8 https://www.encodeproject.org/files/ENCFF583WOJ/@@download/ENCFF583WOJ.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF025VFT bigBed narrowPeak peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF944LTU 3933858 ENCODE Processing Pipeline be3b352392be0aa888ae9799dab0650d https://www.encodeproject.org/files/ENCFF025VFT/@@download/ENCFF025VFT.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF557CHZ bigWig signal p-value ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF868ZCZ 389001878 ENCODE Processing Pipeline 04670caa92755a484f2e056d109bb620 https://www.encodeproject.org/files/ENCFF557CHZ/@@download/ENCFF557CHZ.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF289SFX bigWig signal p-value ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF314OGN, ENCFF485HOH, ENCFF705BZU, ENCFF868ZCZ 469725640 ENCODE Processing Pipeline 34e9a115701d648329acc542b1764085 https://www.encodeproject.org/files/ENCFF289SFX/@@download/ENCFF289SFX.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF215ZSH bigWig fold change over control ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF314OGN, ENCFF485HOH, ENCFF705BZU 266949426 ENCODE Processing Pipeline e9426d2f916794f6049362bbf6ba3052 https://www.encodeproject.org/files/ENCFF215ZSH/@@download/ENCFF215ZSH.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF470WIY bigWig fold change over control ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF314OGN, ENCFF485HOH, ENCFF705BZU, ENCFF868ZCZ 405062621 ENCODE Processing Pipeline cac113e2a2c06e4b2295d039c90ba25b https://www.encodeproject.org/files/ENCFF470WIY/@@download/ENCFF470WIY.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF976VFY bed narrowPeak replicated peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF092BMP, ENCFF429UGB, ENCFF944LTU 1349673 ENCODE Processing Pipeline 07445c4dfdcf6d9382a88d52d6855b48 https://www.encodeproject.org/files/ENCFF976VFY/@@download/ENCFF976VFY.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF770EKR bigBed narrowPeak replicated peaks ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF976VFY 2719399 ENCODE Processing Pipeline fca142b758397302a60a85e47f72bfa1 https://www.encodeproject.org/files/ENCFF770EKR/@@download/ENCFF770EKR.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF001LSO bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LSZ 270875170 Bing Ren, UCSD 184c0008111f1ae4a056cb1c4ecc9225 https://www.encodeproject.org/files/ENCFF001LSO/@@download/ENCFF001LSO.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSP bigBed broadPeak peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBD 327364 Bing Ren, UCSD 6cbd25d9a80d511a0b907efe626823ed https://www.encodeproject.org/files/ENCFF001LSP/@@download/ENCFF001LSP.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSQ bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LTA 363271373 Bing Ren, UCSD f7b4bbc0b3334b27630e8d7adc64825f https://www.encodeproject.org/files/ENCFF001LSQ/@@download/ENCFF001LSQ.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSR bigWig signal ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSO, ENCFF001LSQ 45114690 Bing Ren, UCSD ad044da687ac21ab75ce14749ecf5a44 https://www.encodeproject.org/files/ENCFF001LSR/@@download/ENCFF001LSR.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LSZ fastq reads ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 425888815 Bing Ren, UCSD d1b018b757a214337ac4996913b7685a https://www.encodeproject.org/files/ENCFF001LSZ/@@download/ENCFF001LSZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LTA fastq reads ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 520739019 Bing Ren, UCSD 817d7f1cff4252648b207dc136fc92f2 https://www.encodeproject.org/files/ENCFF001LTA/@@download/ENCFF001LTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001YBD bed broadPeak peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LSO, ENCFF001LSQ 215964 Bing Ren, UCSD 500f8d677171b9695921713949ba6ff1 https://www.encodeproject.org/files/ENCFF001YBD/@@download/ENCFF001YBD.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF722PAU bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LTA, ENCFF018NEO 281299857 ENCODE Processing Pipeline 72ab40ad0a6bcc0d092fc292e20e8dd0 https://www.encodeproject.org/files/ENCFF722PAU/@@download/ENCFF722PAU.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF089IUJ bam unfiltered alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LTA, ENCFF018NEO 548355484 ENCODE Processing Pipeline ddace29e2afde400aa179bf0ade10de9 https://www.encodeproject.org/files/ENCFF089IUJ/@@download/ENCFF089IUJ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF934FZM bam unfiltered alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSZ, ENCFF018NEO 414601720 ENCODE Processing Pipeline 9a9807371dee738c857ef073bd98adb3 https://www.encodeproject.org/files/ENCFF934FZM/@@download/ENCFF934FZM.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF046UOO bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSZ, ENCFF018NEO 159001883 ENCODE Processing Pipeline 7e74c739453cd06924490c3663dc23a9 https://www.encodeproject.org/files/ENCFF046UOO/@@download/ENCFF046UOO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF844QCZ bigWig signal p-value ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF722PAU 208571343 ENCODE Processing Pipeline 529fa47cc16834f8c029df8f029fc406 https://www.encodeproject.org/files/ENCFF844QCZ/@@download/ENCFF844QCZ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF309ODT bigWig signal p-value ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF046UOO, ENCFF283CTW 154530346 ENCODE Processing Pipeline 38a1f2bbc9124297ba9bef4e75cdd5e5 https://www.encodeproject.org/files/ENCFF309ODT/@@download/ENCFF309ODT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF832UWC bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF119XEH 540168 ENCODE Processing Pipeline b61821b99c3d44568a82c55344d03205 https://www.encodeproject.org/files/ENCFF832UWC/@@download/ENCFF832UWC.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF590HPU bigWig signal p-value ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF046UOO, ENCFF283CTW, ENCFF347BCY, ENCFF722PAU 303867753 ENCODE Processing Pipeline 717895ed62bd7372cd1adc81446dd8e3 https://www.encodeproject.org/files/ENCFF590HPU/@@download/ENCFF590HPU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF521RKR bed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF722PAU 4798903 ENCODE Processing Pipeline 61f228433636f7a86e304855989dd132 https://www.encodeproject.org/files/ENCFF521RKR/@@download/ENCFF521RKR.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF436WBE bigBed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF284NSF 5527885 ENCODE Processing Pipeline 99cf88d54ca8a88f65f77537b1cd81fd https://www.encodeproject.org/files/ENCFF436WBE/@@download/ENCFF436WBE.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF775DJU bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF581ZRT 522606 ENCODE Processing Pipeline 8313f1510ab639de90f2bd3a133991cc https://www.encodeproject.org/files/ENCFF775DJU/@@download/ENCFF775DJU.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF584EVO bigWig fold change over control ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF046UOO, ENCFF283CTW 80003888 ENCODE Processing Pipeline a0877ea66134978e44719dc998aa5aea https://www.encodeproject.org/files/ENCFF584EVO/@@download/ENCFF584EVO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF425CSD bigBed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF521RKR 12348383 ENCODE Processing Pipeline a81c8d4e997fdedae4425f3081d83433 https://www.encodeproject.org/files/ENCFF425CSD/@@download/ENCFF425CSD.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF194AWF bigBed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF487HJO 12783264 ENCODE Processing Pipeline 872673e66d62014c930a2595ec3119ca https://www.encodeproject.org/files/ENCFF194AWF/@@download/ENCFF194AWF.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF581ZRT bed narrowPeak conservative idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF284NSF, ENCFF487HJO, ENCFF521RKR, ENCFF547MET 223976 ENCODE Processing Pipeline ac037e6476d51e2b9aa3a3e753516a32 https://www.encodeproject.org/files/ENCFF581ZRT/@@download/ENCFF581ZRT.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF725CUG bigWig fold change over control ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF046UOO, ENCFF283CTW, ENCFF347BCY, ENCFF722PAU 233395797 ENCODE Processing Pipeline 721d4400801c8505beacec56f2b1efce https://www.encodeproject.org/files/ENCFF725CUG/@@download/ENCFF725CUG.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF284NSF bed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF046UOO, ENCFF283CTW 2512779 ENCODE Processing Pipeline f408507fabdef38b206be4486a70145a https://www.encodeproject.org/files/ENCFF284NSF/@@download/ENCFF284NSF.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF682GFJ bigWig fold change over control ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF722PAU 132265589 ENCODE Processing Pipeline 87e812e1e4252d4197082858053842d6 https://www.encodeproject.org/files/ENCFF682GFJ/@@download/ENCFF682GFJ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF487HJO bed narrowPeak peaks and background as input for IDR ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF046UOO, ENCFF283CTW, ENCFF347BCY, ENCFF722PAU 5824948 ENCODE Processing Pipeline 504b4825389ecebda8c09a67e21b4782 https://www.encodeproject.org/files/ENCFF487HJO/@@download/ENCFF487HJO.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF119XEH bed narrowPeak optimal idr thresholded peaks ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF284NSF, ENCFF487HJO, ENCFF521RKR, ENCFF547MET 234446 ENCODE Processing Pipeline e7134bd8cf4ac63d6347ffc764c60e1c https://www.encodeproject.org/files/ENCFF119XEH/@@download/ENCFF119XEH.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF001LXA bam alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LXR 5343981747 Ross Hardison, PennState a3a8b7e5e930ffcb0c9a497e9764758b https://www.encodeproject.org/files/ENCFF001LXA/@@download/ENCFF001LXA.bam mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LXB bigBed broadPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YCC 965437 Ross Hardison, PennState 68b704988caebe4602f17d40dba4fa60 https://www.encodeproject.org/files/ENCFF001LXB/@@download/ENCFF001LXB.bigBed mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LXC bigBed broadPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCD 867990 Ross Hardison, PennState d37451f2b0fec5dfd537e61b9e456114 https://www.encodeproject.org/files/ENCFF001LXC/@@download/ENCFF001LXC.bigBed mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LXD bigBed broadPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCE 874164 Ross Hardison, PennState 4b7f29d6366573c761de1bf9748eabd9 https://www.encodeproject.org/files/ENCFF001LXD/@@download/ENCFF001LXD.bigBed mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LXE bigWig signal ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 4771061142 Ross Hardison, PennState 7269ce8894c5af61747fc4ee6ae844fe https://www.encodeproject.org/files/ENCFF001LXE/@@download/ENCFF001LXE.bigWig mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF001LXF bam alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LXT 4695943202 Ross Hardison, PennState 37fffd402df534d0335e2d1aeea7e3db https://www.encodeproject.org/files/ENCFF001LXF/@@download/ENCFF001LXF.bam mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001LXG bigWig signal ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 4923200636 Ross Hardison, PennState be9f84de8696ff22cf0b0306c7ce875c https://www.encodeproject.org/files/ENCFF001LXG/@@download/ENCFF001LXG.bigWig mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF001LXI bigWig signal ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 5702645958 Ross Hardison, PennState 7a9c3233c81a8a2bfe12091fcb5502f9 https://www.encodeproject.org/files/ENCFF001LXI/@@download/ENCFF001LXI.bigWig mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF001LXR fastq reads ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 5488350000 Ross Hardison, PennState 19a947c5bd3d33bf7bd56ea209c7dd6a https://www.encodeproject.org/files/ENCFF001LXR/@@download/ENCFF001LXR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMU/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length ENCFF001LXT fastq reads ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4668179468 Ross Hardison, PennState ba89ebd60035d80fa9cb6d3ff7dc2fed https://www.encodeproject.org/files/ENCFF001LXT/@@download/ENCFF001LXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length ENCFF001YCC bed broadPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 456139 Ross Hardison, PennState b09b43755eb2cd0b5a4fbbb64b4c878e https://www.encodeproject.org/files/ENCFF001YCC/@@download/ENCFF001YCC.bed.gz mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF001YCD bed broadPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 397693 Ross Hardison, PennState e432c01c4e38d6402e402f4415faef77 https://www.encodeproject.org/files/ENCFF001YCD/@@download/ENCFF001YCD.bed.gz mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF001YCE bed broadPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 394109 Ross Hardison, PennState 0c2400376a914097498825227ef2ae99 https://www.encodeproject.org/files/ENCFF001YCE/@@download/ENCFF001YCE.bed.gz mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF535RBS bam unfiltered alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LXR, ENCFF018NEO 4501332220 ENCODE Processing Pipeline d7a832e1a2a8dc851573d5c11581fd54 https://www.encodeproject.org/files/ENCFF535RBS/@@download/ENCFF535RBS.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF194JTI bam alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LXR, ENCFF018NEO 2012433728 ENCODE Processing Pipeline 2aaa7795278d3c6ab1fbf9c975085a88 https://www.encodeproject.org/files/ENCFF194JTI/@@download/ENCFF194JTI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF433DTK bam unfiltered alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LXT, ENCFF018NEO 3967072184 ENCODE Processing Pipeline 6a0e19f29282f804ab867568ce2e3668 https://www.encodeproject.org/files/ENCFF433DTK/@@download/ENCFF433DTK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF164QTV bam alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LXT, ENCFF018NEO 2026506218 ENCODE Processing Pipeline 7458ec25893c1cbc5d3cefe00735a0fa https://www.encodeproject.org/files/ENCFF164QTV/@@download/ENCFF164QTV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF851JRN bed narrowPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF194JTI, ENCFF381DCK, ENCFF887UBK 604032 ENCODE Processing Pipeline 24b123270d3e864feeea033d1e766968 https://www.encodeproject.org/files/ENCFF851JRN/@@download/ENCFF851JRN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF273PTN bed narrowPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF164QTV, ENCFF381DCK 433241 ENCODE Processing Pipeline 45b722246673e602133dda13a42e5be6 https://www.encodeproject.org/files/ENCFF273PTN/@@download/ENCFF273PTN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF008GAI bigBed narrowPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF851JRN 1763857 ENCODE Processing Pipeline 30c4e7a9861068fcdba5f476abcae98f https://www.encodeproject.org/files/ENCFF008GAI/@@download/ENCFF008GAI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF490HTA bigBed narrowPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF273PTN 1388330 ENCODE Processing Pipeline e05e26922c940056ea8beb4138f89292 https://www.encodeproject.org/files/ENCFF490HTA/@@download/ENCFF490HTA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF815QJQ bed narrowPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF164QTV, ENCFF194JTI, ENCFF381DCK, ENCFF887UBK 551100 ENCODE Processing Pipeline 12e7955fa6aa64c8121f41c383e87920 https://www.encodeproject.org/files/ENCFF815QJQ/@@download/ENCFF815QJQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF377HSF bigBed narrowPeak peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF815QJQ 1644127 ENCODE Processing Pipeline 87d47d853badf44a4efb1d6c5d7872ae https://www.encodeproject.org/files/ENCFF377HSF/@@download/ENCFF377HSF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF751JYB bigWig signal p-value ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF194JTI, ENCFF381DCK, ENCFF887UBK 754684483 ENCODE Processing Pipeline 24410550ec4bdfcc6c96fc30a627a4ff https://www.encodeproject.org/files/ENCFF751JYB/@@download/ENCFF751JYB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF537CYT bigWig signal p-value ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF164QTV, ENCFF381DCK 355596977 ENCODE Processing Pipeline 32d8bf4bbe5704e59fbde038d1e17cd1 https://www.encodeproject.org/files/ENCFF537CYT/@@download/ENCFF537CYT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF409FTQ bigWig signal p-value ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF164QTV, ENCFF194JTI, ENCFF381DCK, ENCFF887UBK 747749408 ENCODE Processing Pipeline f73733f3c8ced198fc380b201d2a4419 https://www.encodeproject.org/files/ENCFF409FTQ/@@download/ENCFF409FTQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF165RXS bigWig fold change over control ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF194JTI, ENCFF381DCK, ENCFF887UBK 658860526 ENCODE Processing Pipeline 616065aa6893183d37a119cbc8d65c19 https://www.encodeproject.org/files/ENCFF165RXS/@@download/ENCFF165RXS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF022CCW bigWig fold change over control ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF164QTV, ENCFF381DCK 536927916 ENCODE Processing Pipeline 0b8807462759a7dd5286ab3a0b9207e8 https://www.encodeproject.org/files/ENCFF022CCW/@@download/ENCFF022CCW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF612WPA bigWig fold change over control ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF164QTV, ENCFF194JTI, ENCFF381DCK, ENCFF887UBK 1025685734 ENCODE Processing Pipeline 59366843adec5bd6ad7de1ba2490954a https://www.encodeproject.org/files/ENCFF612WPA/@@download/ENCFF612WPA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF339CXH bed narrowPeak replicated peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF273PTN, ENCFF815QJQ, ENCFF851JRN 660171 ENCODE Processing Pipeline 45754538c0d5101beb39d29d463c2159 https://www.encodeproject.org/files/ENCFF339CXH/@@download/ENCFF339CXH.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF388QZV bigBed narrowPeak replicated peaks ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF339CXH 1537326 ENCODE Processing Pipeline 3c7c6ab2708344f5d9edbb81d7eacf0f https://www.encodeproject.org/files/ENCFF388QZV/@@download/ENCFF388QZV.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001KAJ bam alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KAW 1491626272 Bing Ren, UCSD 01a5f9d83266cd5e8729bc78e52e1b2c https://www.encodeproject.org/files/ENCFF001KAJ/@@download/ENCFF001KAJ.bam mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KAL bigBed broadPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWF 948465 Bing Ren, UCSD 2285ce51c5d5a8810ebc32ea916b6e79 https://www.encodeproject.org/files/ENCFF001KAL/@@download/ENCFF001KAL.bigBed mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KAN bam alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KBA 2940491381 Bing Ren, UCSD c7c1ebdfb63b79edc043447269720a9d https://www.encodeproject.org/files/ENCFF001KAN/@@download/ENCFF001KAN.bam mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KAO bigWig signal ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KAJ, ENCFF001KAN 56605566 Bing Ren, UCSD 3f03bade321fe158572930ae20ad2b29 https://www.encodeproject.org/files/ENCFF001KAO/@@download/ENCFF001KAO.bigWig mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KAW fastq reads ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1639456943 Bing Ren, UCSD 65f1976db2ee92e8a163641e4736a7b4 https://www.encodeproject.org/files/ENCFF001KAW/@@download/ENCFF001KAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCH/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KBA fastq reads ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 3451127626 Bing Ren, UCSD 90773536cb598f6c9cc63c9db2beab98 https://www.encodeproject.org/files/ENCFF001KBA/@@download/ENCFF001KBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCI/ released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XWF bed broadPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KAJ, ENCFF001KAN 630300 Bing Ren, UCSD 8146a5be9678eb5399212d1f82d525e8 https://www.encodeproject.org/files/ENCFF001XWF/@@download/ENCFF001XWF.bed.gz mm9 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF605BWX bam unfiltered alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAW, ENCFF018NEO 1519685106 ENCODE Processing Pipeline 44e7c14d72d2d797044a4b1fb306ce1a https://www.encodeproject.org/files/ENCFF605BWX/@@download/ENCFF605BWX.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF567EVZ bam alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAW, ENCFF018NEO 517068780 ENCODE Processing Pipeline a2dae2653ab1a362bdb88ee156912637 https://www.encodeproject.org/files/ENCFF567EVZ/@@download/ENCFF567EVZ.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF093AKV bam unfiltered alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBA, ENCFF018NEO 2909486384 ENCODE Processing Pipeline ac2b9114ee8ab0d472eeec20030d4ea0 https://www.encodeproject.org/files/ENCFF093AKV/@@download/ENCFF093AKV.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF452YQP bam alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBA, ENCFF018NEO 333321375 ENCODE Processing Pipeline c73ae32b9581616aa14c964cdd17aa36 https://www.encodeproject.org/files/ENCFF452YQP/@@download/ENCFF452YQP.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF111XZW bed narrowPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF567EVZ 1694759 ENCODE Processing Pipeline 75fc69537cfa7f1af3da70764015ee8d https://www.encodeproject.org/files/ENCFF111XZW/@@download/ENCFF111XZW.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF549PSH bed narrowPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF452YQP 1605981 ENCODE Processing Pipeline e541b55c36ce861b457e2137610d614f https://www.encodeproject.org/files/ENCFF549PSH/@@download/ENCFF549PSH.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF685ZXV bed narrowPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF452YQP, ENCFF567EVZ 1810104 ENCODE Processing Pipeline 26d47763c9ba5bc0fb7770611295d9b7 https://www.encodeproject.org/files/ENCFF685ZXV/@@download/ENCFF685ZXV.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF183EQT bigBed narrowPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF111XZW 4939386 ENCODE Processing Pipeline 50fb90b4243d8f28ae88948d6148294d https://www.encodeproject.org/files/ENCFF183EQT/@@download/ENCFF183EQT.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF666BAT bigBed narrowPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF685ZXV 5268926 ENCODE Processing Pipeline c9eebb0d31a6ab72eea5071200476e18 https://www.encodeproject.org/files/ENCFF666BAT/@@download/ENCFF666BAT.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF055RFJ bigBed narrowPeak peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF549PSH 4843769 ENCODE Processing Pipeline 092fa922c728e0834e4c3768436895ba https://www.encodeproject.org/files/ENCFF055RFJ/@@download/ENCFF055RFJ.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF139GKZ bigWig signal p-value ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF567EVZ 300329822 ENCODE Processing Pipeline fe38f0d09bab4d267ca4c7f11a569b9d https://www.encodeproject.org/files/ENCFF139GKZ/@@download/ENCFF139GKZ.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF028ZKY bigWig signal p-value ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF452YQP 278896804 ENCODE Processing Pipeline 492997a9d8d98494e52f606f35ad1283 https://www.encodeproject.org/files/ENCFF028ZKY/@@download/ENCFF028ZKY.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF874OBT bigWig signal p-value ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF452YQP, ENCFF567EVZ 458084881 ENCODE Processing Pipeline 7d963594afa2990ee915eef85a0d9a3d https://www.encodeproject.org/files/ENCFF874OBT/@@download/ENCFF874OBT.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF791SEE bigWig fold change over control ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF567EVZ 208633428 ENCODE Processing Pipeline fb7003c0090f4eb0279e3336d45c68af https://www.encodeproject.org/files/ENCFF791SEE/@@download/ENCFF791SEE.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF900III bigWig fold change over control ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF452YQP 155097730 ENCODE Processing Pipeline 302a7c77d7346defbcc15ea269183293 https://www.encodeproject.org/files/ENCFF900III/@@download/ENCFF900III.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF122GDX bigWig fold change over control ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF452YQP, ENCFF567EVZ 420236412 ENCODE Processing Pipeline 4b187e890bede79292a92d2b636cbc55 https://www.encodeproject.org/files/ENCFF122GDX/@@download/ENCFF122GDX.bigWig mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF841GUA bed narrowPeak replicated peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF111XZW, ENCFF549PSH, ENCFF685ZXV 1716933 ENCODE Processing Pipeline 6ff543470edf6d9e9a723574d48236dd https://www.encodeproject.org/files/ENCFF841GUA/@@download/ENCFF841GUA.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF689TXK bigBed narrowPeak replicated peaks ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF841GUA 3703744 ENCODE Processing Pipeline 0579f61f468ca75458a47dd7426b5bd0 https://www.encodeproject.org/files/ENCFF689TXK/@@download/ENCFF689TXK.bigBed mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KAP bam alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KAZ 1293920269 Bing Ren, UCSD 133be958f03c5104814e1961b63a7ddf https://www.encodeproject.org/files/ENCFF001KAP/@@download/ENCFF001KAP.bam mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF001KAS bigBed broadPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWG 484659 Bing Ren, UCSD 238c60547be2034f49f4181ed3c408dd https://www.encodeproject.org/files/ENCFF001KAS/@@download/ENCFF001KAS.bigBed mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF001KAT bam alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KBF 2625808783 Bing Ren, UCSD f21065083e1b12bd125f8458215ab38a https://www.encodeproject.org/files/ENCFF001KAT/@@download/ENCFF001KAT.bam mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF001KAU bigWig signal ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KAP, ENCFF001KAT 52820497 Bing Ren, UCSD d29167637c10612957f15a6ecabe06af https://www.encodeproject.org/files/ENCFF001KAU/@@download/ENCFF001KAU.bigWig mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF001KAZ fastq reads ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1346641421 Bing Ren, UCSD 97fea21a8a0e1084e3eafaeb30b93840 https://www.encodeproject.org/files/ENCFF001KAZ/@@download/ENCFF001KAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCH/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF001KBF fastq reads ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 2861575085 Bing Ren, UCSD c13d7e6880cfef2f53f9e098954e86ce https://www.encodeproject.org/files/ENCFF001KBF/@@download/ENCFF001KBF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCI/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF001XWG bed broadPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KAP, ENCFF001KAT 270323 Bing Ren, UCSD b43488d560cf44bb465075a1b24ffe93 https://www.encodeproject.org/files/ENCFF001XWG/@@download/ENCFF001XWG.bed.gz mm9 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF138CYF bam unfiltered alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBF, ENCFF018NEO 2614446549 ENCODE Processing Pipeline 9fc42d3a54d770d96d018fdcc961e41e https://www.encodeproject.org/files/ENCFF138CYF/@@download/ENCFF138CYF.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF131SEA bam unfiltered alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAZ, ENCFF018NEO 1325445277 ENCODE Processing Pipeline 6b2ff90a956351019b92885d91006b76 https://www.encodeproject.org/files/ENCFF131SEA/@@download/ENCFF131SEA.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF706ZAB bam alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAZ, ENCFF018NEO 679762682 ENCODE Processing Pipeline 2fde67064c95c0397a9c1df6618b9362 https://www.encodeproject.org/files/ENCFF706ZAB/@@download/ENCFF706ZAB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF694QDA bam alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBF, ENCFF018NEO 825986081 ENCODE Processing Pipeline 34115d07b4431a87ac53d65607883729 https://www.encodeproject.org/files/ENCFF694QDA/@@download/ENCFF694QDA.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF398FIN bed narrowPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF706ZAB 651811 ENCODE Processing Pipeline e66b28aea2c2fddf8f996a21dc78236d https://www.encodeproject.org/files/ENCFF398FIN/@@download/ENCFF398FIN.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF962UOJ bed narrowPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF694QDA 1108958 ENCODE Processing Pipeline 7a42eef8a7b6eef4604d49d6fd9434bb https://www.encodeproject.org/files/ENCFF962UOJ/@@download/ENCFF962UOJ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF026QBZ bed narrowPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF694QDA, ENCFF706ZAB 1056468 ENCODE Processing Pipeline 6431773ff038fb8cf12f035ab63ea33d https://www.encodeproject.org/files/ENCFF026QBZ/@@download/ENCFF026QBZ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF255JGM bigBed narrowPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF962UOJ 3267869 ENCODE Processing Pipeline e5ad8fd13918586a0555beda0f6540c0 https://www.encodeproject.org/files/ENCFF255JGM/@@download/ENCFF255JGM.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF351EQR bigWig signal p-value ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF694QDA 342944816 ENCODE Processing Pipeline d76ffae2c5f4fbf089f4abc45ac96796 https://www.encodeproject.org/files/ENCFF351EQR/@@download/ENCFF351EQR.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF629VHA bigBed narrowPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF398FIN 2031520 ENCODE Processing Pipeline 304d6222e83d63f98f937891e6146c95 https://www.encodeproject.org/files/ENCFF629VHA/@@download/ENCFF629VHA.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF942MRZ bigWig signal p-value ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF694QDA, ENCFF706ZAB 546365685 ENCODE Processing Pipeline 98f11764396dcec1fad62f1b2d05b753 https://www.encodeproject.org/files/ENCFF942MRZ/@@download/ENCFF942MRZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF011TAF bigWig fold change over control ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF706ZAB 231928481 ENCODE Processing Pipeline 6b393dbdd26a27101319f313aaa52339 https://www.encodeproject.org/files/ENCFF011TAF/@@download/ENCFF011TAF.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF704ZVD bigWig fold change over control ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF694QDA 262002560 ENCODE Processing Pipeline 16cdd29127906cb732a6ad64a31d8a37 https://www.encodeproject.org/files/ENCFF704ZVD/@@download/ENCFF704ZVD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF649SHT bigBed narrowPeak replicated peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF655AFF 1966100 ENCODE Processing Pipeline 1e6e0873847b5b3084ede2c331bd95ac https://www.encodeproject.org/files/ENCFF649SHT/@@download/ENCFF649SHT.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF500BXF bigWig fold change over control ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF694QDA, ENCFF706ZAB 528336159 ENCODE Processing Pipeline 695a7f63318aae1ea78af63f42553d1a https://www.encodeproject.org/files/ENCFF500BXF/@@download/ENCFF500BXF.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF809TSN bigBed narrowPeak peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF026QBZ 3030973 ENCODE Processing Pipeline 6eb0a20f7abdaf39a082dfa43fb95eb3 https://www.encodeproject.org/files/ENCFF809TSN/@@download/ENCFF809TSN.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF696MZP bigWig signal p-value ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF706ZAB 305935272 ENCODE Processing Pipeline 99203a9a903cd93d18f22bbf1cd996d3 https://www.encodeproject.org/files/ENCFF696MZP/@@download/ENCFF696MZP.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF655AFF bed narrowPeak replicated peaks ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF026QBZ, ENCFF398FIN, ENCFF962UOJ 912520 ENCODE Processing Pipeline 2013c29892d674e10441f6bb77035344 https://www.encodeproject.org/files/ENCFF655AFF/@@download/ENCFF655AFF.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF001YZC fastq reads ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1523580669 Bing Ren, UCSD f8d3873cb2399b57b1292d338a787439 SRA:SRR3652003 https://www.encodeproject.org/files/ENCFF001YZC/@@download/ENCFF001YZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARK/ released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, control low read depth, inconsistent control read length, low read length insufficient read depth ENCFF001YZD fastq reads ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1517706743 Bing Ren, UCSD 50d0a29ffa9207a749f43800b92b2509 SRA:SRR3652002 https://www.encodeproject.org/files/ENCFF001YZD/@@download/ENCFF001YZD.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARJ/ released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF041PKD bam alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001YZD, ENCFF806TVZ 1153312577 ENCODE Processing Pipeline 51e378477e7e82f6e8ee5ff27bb1ea66 https://www.encodeproject.org/files/ENCFF041PKD/@@download/ENCFF041PKD.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF156WKE bam alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001YZC, ENCFF806TVZ 1104648408 ENCODE Processing Pipeline 1a07b747d4b85a38e26a622b21761ec3 https://www.encodeproject.org/files/ENCFF156WKE/@@download/ENCFF156WKE.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF231YBP bigBed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF147UMM 3682842 ENCODE Processing Pipeline a11856c8106d412cbe2bca2033691661 https://www.encodeproject.org/files/ENCFF231YBP/@@download/ENCFF231YBP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF040NOG bed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF041PKD, ENCFF444YOE, ENCFF934LFS 1017373 ENCODE Processing Pipeline 1ec3f49f25d98c2677c6c9461d116d24 https://www.encodeproject.org/files/ENCFF040NOG/@@download/ENCFF040NOG.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF918KVZ bigWig signal p-value ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156WKE, ENCFF444YOE, ENCFF934LFS 390965834 ENCODE Processing Pipeline afd98441cd8e1733a6dd33aad68a7ca8 https://www.encodeproject.org/files/ENCFF918KVZ/@@download/ENCFF918KVZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF420JOC bigBed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF040NOG 2049007 ENCODE Processing Pipeline 2e0c953d57f17835c60469c185a949ac https://www.encodeproject.org/files/ENCFF420JOC/@@download/ENCFF420JOC.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF468RGT bigWig signal p-value ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF041PKD, ENCFF156WKE, ENCFF444YOE, ENCFF934LFS 739874688 ENCODE Processing Pipeline 474d197a88ab6b851f9c119a2c0dbd5a https://www.encodeproject.org/files/ENCFF468RGT/@@download/ENCFF468RGT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF925TVQ bigWig fold change over control ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF041PKD, ENCFF444YOE, ENCFF934LFS 438681839 ENCODE Processing Pipeline 05ee2d5b440d7af634745b38e4e15aca https://www.encodeproject.org/files/ENCFF925TVQ/@@download/ENCFF925TVQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF058JDU bigBed narrowPeak replicated peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF370PVY 1462992 ENCODE Processing Pipeline bb82dd01251d328c215600359fa2714a https://www.encodeproject.org/files/ENCFF058JDU/@@download/ENCFF058JDU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF147UMM bed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156WKE, ENCFF444YOE, ENCFF934LFS 1593398 ENCODE Processing Pipeline 33cdcc240069a4fac73e0c48a957062e https://www.encodeproject.org/files/ENCFF147UMM/@@download/ENCFF147UMM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF987SYY bed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF041PKD, ENCFF156WKE, ENCFF444YOE, ENCFF934LFS 1484957 ENCODE Processing Pipeline 8d42f6a891ed0071ff323ae03a41dd3e https://www.encodeproject.org/files/ENCFF987SYY/@@download/ENCFF987SYY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF652CAC bigWig signal p-value ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF041PKD, ENCFF444YOE, ENCFF934LFS 451197697 ENCODE Processing Pipeline 39f6ad2ebe6334ca3ecaae62ef8095ec https://www.encodeproject.org/files/ENCFF652CAC/@@download/ENCFF652CAC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF961SGC bigWig fold change over control ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156WKE, ENCFF444YOE, ENCFF934LFS 486988268 ENCODE Processing Pipeline be300b60695971623cd0a8bb4ed83226 https://www.encodeproject.org/files/ENCFF961SGC/@@download/ENCFF961SGC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF788SGA bigWig fold change over control ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF041PKD, ENCFF156WKE, ENCFF444YOE, ENCFF934LFS 743378982 ENCODE Processing Pipeline 9d0fe608934f345bac8d2c8acb03c210 https://www.encodeproject.org/files/ENCFF788SGA/@@download/ENCFF788SGA.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF081DQW bigBed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF987SYY 3426900 ENCODE Processing Pipeline 6cb4176d43d5981dbeeea3c7691faee1 https://www.encodeproject.org/files/ENCFF081DQW/@@download/ENCFF081DQW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF370PVY bed narrowPeak replicated peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040NOG, ENCFF147UMM, ENCFF987SYY 806116 ENCODE Processing Pipeline f046fde9cc69d8c2dd4e83a95a18da33 https://www.encodeproject.org/files/ENCFF370PVY/@@download/ENCFF370PVY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF098RSP bam unfiltered alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001YZC, ENCFF018NEO 1780099229 ENCODE Processing Pipeline 382f5f1be6fb625209e2a4f0daaccb79 https://www.encodeproject.org/files/ENCFF098RSP/@@download/ENCFF098RSP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF282SYK bam unfiltered alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001YZD, ENCFF018NEO 1342585376 ENCODE Processing Pipeline 0f4926d0a387e7e2a7e661710555cc7c https://www.encodeproject.org/files/ENCFF282SYK/@@download/ENCFF282SYK.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF159IDS bam alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001YZD, ENCFF018NEO 893050944 ENCODE Processing Pipeline e24467bf40ef564ea22ffed3453f787c https://www.encodeproject.org/files/ENCFF159IDS/@@download/ENCFF159IDS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF602ZZK bam alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001YZC, ENCFF018NEO 1104473579 ENCODE Processing Pipeline e4cc93535a7cb0098e22a11baa910664 https://www.encodeproject.org/files/ENCFF602ZZK/@@download/ENCFF602ZZK.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF121TSC bed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF602ZZK, ENCFF681SBF 1437777 ENCODE Processing Pipeline 9c96c7438bac00b60adfbaacc14783c1 https://www.encodeproject.org/files/ENCFF121TSC/@@download/ENCFF121TSC.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF235PKC bed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF159IDS, ENCFF319PHE, ENCFF681SBF 974139 ENCODE Processing Pipeline 728f357fee3e67897417a7eb968de596 https://www.encodeproject.org/files/ENCFF235PKC/@@download/ENCFF235PKC.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF903IBK bed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF159IDS, ENCFF319PHE, ENCFF602ZZK, ENCFF681SBF 1547185 ENCODE Processing Pipeline b96681820eabe98c71f1ebbae5c60a6a https://www.encodeproject.org/files/ENCFF903IBK/@@download/ENCFF903IBK.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF806GFH bigBed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF121TSC 3435642 ENCODE Processing Pipeline c809ac5cfd8adb40f1596a54705212e5 https://www.encodeproject.org/files/ENCFF806GFH/@@download/ENCFF806GFH.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF283ABU bigBed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF235PKC 1995163 ENCODE Processing Pipeline 69060678f1b73a82d7a60f6d6bc5be72 https://www.encodeproject.org/files/ENCFF283ABU/@@download/ENCFF283ABU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF240LHC bigBed narrowPeak peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF903IBK 3559612 ENCODE Processing Pipeline cc5e2a170ba7ace2b934f912b9a80792 https://www.encodeproject.org/files/ENCFF240LHC/@@download/ENCFF240LHC.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF181BZI bigWig signal p-value ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF602ZZK, ENCFF681SBF 529432545 ENCODE Processing Pipeline d39db26e462ff322fd2b0150f1108be9 https://www.encodeproject.org/files/ENCFF181BZI/@@download/ENCFF181BZI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF507QCI bigWig signal p-value ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF159IDS, ENCFF319PHE, ENCFF681SBF 407441099 ENCODE Processing Pipeline fa2e941c2e5c2c0ad46fbb2326c044fe https://www.encodeproject.org/files/ENCFF507QCI/@@download/ENCFF507QCI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF107IES bigWig signal p-value ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF159IDS, ENCFF319PHE, ENCFF602ZZK, ENCFF681SBF 734963922 ENCODE Processing Pipeline df65e407c23ba340644439931cd989f5 https://www.encodeproject.org/files/ENCFF107IES/@@download/ENCFF107IES.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF862VOP bigWig fold change over control ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF602ZZK, ENCFF681SBF 539190419 ENCODE Processing Pipeline a03dd9444171d76685dca4bb5628e09c https://www.encodeproject.org/files/ENCFF862VOP/@@download/ENCFF862VOP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF144QWN bigWig fold change over control ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF159IDS, ENCFF319PHE, ENCFF681SBF 436545331 ENCODE Processing Pipeline 3e66dafdfc56c1a27fcecf40c69f1ad6 https://www.encodeproject.org/files/ENCFF144QWN/@@download/ENCFF144QWN.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF143LAV bigWig fold change over control ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF159IDS, ENCFF319PHE, ENCFF602ZZK, ENCFF681SBF 741210171 ENCODE Processing Pipeline 7de355501c728d108d8b0c8f0cbd3597 https://www.encodeproject.org/files/ENCFF143LAV/@@download/ENCFF143LAV.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF445MZE bed narrowPeak replicated peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF121TSC, ENCFF235PKC, ENCFF903IBK 797163 ENCODE Processing Pipeline 08cf87a15cdf773e26c2f9e385be4475 https://www.encodeproject.org/files/ENCFF445MZE/@@download/ENCFF445MZE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF746QCV bigBed narrowPeak replicated peaks ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF445MZE 1840233 ENCODE Processing Pipeline db59fcb606a4acf76ab4be76fd1381ae https://www.encodeproject.org/files/ENCFF746QCV/@@download/ENCFF746QCV.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF391SYI fastq reads ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1184067996 Bing Ren, UCSD 22edeaad313c23195854ea97528f34b2 SRA:SRR3651709 https://www.encodeproject.org/files/ENCFF391SYI/@@download/ENCFF391SYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF951IBS fastq reads ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 243604813 Bing Ren, UCSD 09e7cf0b4fb35283bd8a1a807de2adb9 SRA:SRR3651710 https://www.encodeproject.org/files/ENCFF951IBS/@@download/ENCFF951IBS.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF330QUX fastq reads ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2288873797 Bing Ren, UCSD 4c8af9304db7223c53ac4bb4a78fb00e SRA:SRR3651711 https://www.encodeproject.org/files/ENCFF330QUX/@@download/ENCFF330QUX.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF272ARY bam alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF330QUX, ENCFF806TVZ 1381859673 ENCODE Processing Pipeline 4c8cd30e4fa903f7c72f34187a21cadf https://www.encodeproject.org/files/ENCFF272ARY/@@download/ENCFF272ARY.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF983VHX bam alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF391SYI, ENCFF806TVZ, ENCFF951IBS 1107995731 ENCODE Processing Pipeline fc33ee89597b87e265d6895d5b3514eb https://www.encodeproject.org/files/ENCFF983VHX/@@download/ENCFF983VHX.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF094ORV bigBed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF351VLC 2989472 ENCODE Processing Pipeline c475ba0b92eb279aa68e3955581278b9 https://www.encodeproject.org/files/ENCFF094ORV/@@download/ENCFF094ORV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF386XVV bigBed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF368QDE 2954333 ENCODE Processing Pipeline c33782e2339aa1966723b6f7794ee5a2 https://www.encodeproject.org/files/ENCFF386XVV/@@download/ENCFF386XVV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF351VLC bed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF272ARY, ENCFF881FJP 1054061 ENCODE Processing Pipeline 89083a56cf0dd1321986878c95b0cc9c https://www.encodeproject.org/files/ENCFF351VLC/@@download/ENCFF351VLC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF188TKJ bigWig signal p-value ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF881FJP, ENCFF983VHX 866796353 ENCODE Processing Pipeline 7a50d38286b128783eb8c95f9d1969a6 https://www.encodeproject.org/files/ENCFF188TKJ/@@download/ENCFF188TKJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF795CDQ bigWig signal p-value ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF272ARY, ENCFF881FJP 770530088 ENCODE Processing Pipeline 3ab4cdab13363806f5bace04c3abf3a1 https://www.encodeproject.org/files/ENCFF795CDQ/@@download/ENCFF795CDQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF712ALS bigWig signal p-value ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF272ARY, ENCFF881FJP, ENCFF983VHX 1013476375 ENCODE Processing Pipeline de46ebb07492be25dbc1ca4b875ce314 https://www.encodeproject.org/files/ENCFF712ALS/@@download/ENCFF712ALS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF766HRN bigBed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF310XCN 2537257 ENCODE Processing Pipeline 6d88f52af33f10ae06787f9abebacad0 https://www.encodeproject.org/files/ENCFF766HRN/@@download/ENCFF766HRN.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF310XCN bed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF881FJP, ENCFF983VHX 879754 ENCODE Processing Pipeline 7ea4ada2f0fc1d80ab8b7fc844cf9f1d https://www.encodeproject.org/files/ENCFF310XCN/@@download/ENCFF310XCN.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF368QDE bed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF272ARY, ENCFF881FJP, ENCFF983VHX 1054385 ENCODE Processing Pipeline ad2eb17c183978239dc20a985065922f https://www.encodeproject.org/files/ENCFF368QDE/@@download/ENCFF368QDE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF998PKE bigWig fold change over control ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF881FJP, ENCFF983VHX 686355459 ENCODE Processing Pipeline 0f6a8201f6c221d35de9427574374b07 https://www.encodeproject.org/files/ENCFF998PKE/@@download/ENCFF998PKE.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF417OUH bigWig fold change over control ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF272ARY, ENCFF881FJP, ENCFF983VHX 1017086167 ENCODE Processing Pipeline 6e87f2de16f345a8fc746bf0631ca27d https://www.encodeproject.org/files/ENCFF417OUH/@@download/ENCFF417OUH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF714NRC bed narrowPeak replicated peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF310XCN, ENCFF351VLC, ENCFF368QDE 1066259 ENCODE Processing Pipeline d9aef9e8c2ec0b796073f5767d405c4b https://www.encodeproject.org/files/ENCFF714NRC/@@download/ENCFF714NRC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF827IHO bigWig fold change over control ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF272ARY, ENCFF881FJP 698983320 ENCODE Processing Pipeline f15790b70377ab4841765e818f9c4e6c https://www.encodeproject.org/files/ENCFF827IHO/@@download/ENCFF827IHO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF498OUM bigBed narrowPeak replicated peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF714NRC 2295588 ENCODE Processing Pipeline 71dc1f50841c2b6116e504163c8d0595 https://www.encodeproject.org/files/ENCFF498OUM/@@download/ENCFF498OUM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF697QYC bam unfiltered alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF391SYI, ENCFF951IBS 1615729908 ENCODE Processing Pipeline 7b9e49a4bd09cbe46446966e2080aca3 https://www.encodeproject.org/files/ENCFF697QYC/@@download/ENCFF697QYC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF251SGO bam unfiltered alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF330QUX 2463262709 ENCODE Processing Pipeline 46ec6cdd8bcd92ecde7d2beab0cdb589 https://www.encodeproject.org/files/ENCFF251SGO/@@download/ENCFF251SGO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF962EQP bam alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF391SYI, ENCFF951IBS 1107862764 ENCODE Processing Pipeline 7b9e14fe49987477ac7a904ca860c71d https://www.encodeproject.org/files/ENCFF962EQP/@@download/ENCFF962EQP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF854NXB bam alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF330QUX 1381681531 ENCODE Processing Pipeline f7632e7868514b3e91181c9d7688b46c https://www.encodeproject.org/files/ENCFF854NXB/@@download/ENCFF854NXB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF350KCU bed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF962EQP 874485 ENCODE Processing Pipeline 7acd1e5c6f01ac31e90ae35e4bbb5915 https://www.encodeproject.org/files/ENCFF350KCU/@@download/ENCFF350KCU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF654BAU bed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF854NXB 1062372 ENCODE Processing Pipeline 02ecfa79eba3679ff5cb38dd4279a2b5 https://www.encodeproject.org/files/ENCFF654BAU/@@download/ENCFF654BAU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF203BBR bed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF854NXB, ENCFF962EQP 1054779 ENCODE Processing Pipeline ec664d5ab8c0391a103622337d90a2f3 https://www.encodeproject.org/files/ENCFF203BBR/@@download/ENCFF203BBR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF615TFY bigBed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF350KCU 2532359 ENCODE Processing Pipeline ec93ac1d1fb6ea2579d58734d9cfadb6 https://www.encodeproject.org/files/ENCFF615TFY/@@download/ENCFF615TFY.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF623GEL bigBed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF654BAU 3011251 ENCODE Processing Pipeline fd0a212b459d1a2b60126650af8e8f15 https://www.encodeproject.org/files/ENCFF623GEL/@@download/ENCFF623GEL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF748ODN bigBed narrowPeak peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF203BBR 2950579 ENCODE Processing Pipeline 8f5841692cd4c6b1042b45d093d896f5 https://www.encodeproject.org/files/ENCFF748ODN/@@download/ENCFF748ODN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF079YBW bigWig signal p-value ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF962EQP 710396893 ENCODE Processing Pipeline 6bc0febad57de0cf83df6959498ccbf4 https://www.encodeproject.org/files/ENCFF079YBW/@@download/ENCFF079YBW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF009XJF bigWig signal p-value ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF854NXB 853188294 ENCODE Processing Pipeline a23aef50c96c01c4d38036ee2efb97fc https://www.encodeproject.org/files/ENCFF009XJF/@@download/ENCFF009XJF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF746ECP bigWig signal p-value ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF854NXB, ENCFF962EQP 916904566 ENCODE Processing Pipeline 16a05be78eb9e7d87dba05562f1f5553 https://www.encodeproject.org/files/ENCFF746ECP/@@download/ENCFF746ECP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF339EJN bigWig fold change over control ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF962EQP 654623197 ENCODE Processing Pipeline 7c0a621e859b631afda11a6adf99dabd https://www.encodeproject.org/files/ENCFF339EJN/@@download/ENCFF339EJN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF189FUN bigWig fold change over control ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF854NXB 739699552 ENCODE Processing Pipeline cdf0fa93104c3bdf30df1f3239f74b25 https://www.encodeproject.org/files/ENCFF189FUN/@@download/ENCFF189FUN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF755OHM bigWig fold change over control ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF854NXB, ENCFF962EQP 1067356222 ENCODE Processing Pipeline 589cc3dc16240a30ef1090c07d0035d7 https://www.encodeproject.org/files/ENCFF755OHM/@@download/ENCFF755OHM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF311NCF bigBed narrowPeak replicated peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF860WOO 2289356 ENCODE Processing Pipeline 94d2d7124fffc816f9c5e1b0f772fd3c https://www.encodeproject.org/files/ENCFF311NCF/@@download/ENCFF311NCF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF860WOO bed narrowPeak replicated peaks ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF203BBR, ENCFF350KCU, ENCFF654BAU 1065940 ENCODE Processing Pipeline 50c2199aafb36ff3c8e96360800ee784 https://www.encodeproject.org/files/ENCFF860WOO/@@download/ENCFF860WOO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001MET bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MFJ 5013468765 Ross Hardison, PennState 8d9332633a10c8db2d00092fce69ae12 https://www.encodeproject.org/files/ENCFF001MET/@@download/ENCFF001MET.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MEU bigBed broadPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YEE 1062866 Ross Hardison, PennState 2e5cf9c2357aef1ac99eca180f5e4c05 https://www.encodeproject.org/files/ENCFF001MEU/@@download/ENCFF001MEU.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MEV bigBed broadPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YEF 939751 Ross Hardison, PennState 0cad98baf5a118caf688dcd52279ec1e https://www.encodeproject.org/files/ENCFF001MEV/@@download/ENCFF001MEV.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MEW bigBed broadPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YEG 1122953 Ross Hardison, PennState 1e0d951bbc9fa074a26ca7fd20c3496d https://www.encodeproject.org/files/ENCFF001MEW/@@download/ENCFF001MEW.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MEX bigWig signal ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5073247604 Ross Hardison, PennState 511dbd1a412e341e4018a98554249b8c https://www.encodeproject.org/files/ENCFF001MEX/@@download/ENCFF001MEX.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MEY bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MFF 4167190715 Ross Hardison, PennState 0f969582323b07b8d59d570754888556 https://www.encodeproject.org/files/ENCFF001MEY/@@download/ENCFF001MEY.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MEZ bigWig signal ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5404683006 Ross Hardison, PennState 7dc2e56f3769c49cda394b78cb97be4b https://www.encodeproject.org/files/ENCFF001MEZ/@@download/ENCFF001MEZ.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MFB bigWig signal ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 6048777226 Ross Hardison, PennState 592314238e2a4f2649fe340e289bef94 https://www.encodeproject.org/files/ENCFF001MFB/@@download/ENCFF001MFB.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MFF fastq reads ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 48 single-ended 3744485600 Ross Hardison, PennState 16d3d530fee229ac53172bcf2a6c3673 https://www.encodeproject.org/files/ENCFF001MFF/@@download/ENCFF001MFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths biological replicates with identical biosample ENCFF001MFJ fastq reads ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4728817048 Ross Hardison, PennState b37a24a5919ebf89b0cf1292a1e16f36 https://www.encodeproject.org/files/ENCFF001MFJ/@@download/ENCFF001MFJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUT/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths biological replicates with identical biosample ENCFF001YEE bed broadPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 618310 Ross Hardison, PennState 641ebece6900a187bc1141d5baa3d4c9 https://www.encodeproject.org/files/ENCFF001YEE/@@download/ENCFF001YEE.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001YEF bed broadPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 537555 Ross Hardison, PennState cbcd0486657984ee738d014ce99db859 https://www.encodeproject.org/files/ENCFF001YEF/@@download/ENCFF001YEF.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001YEG bed broadPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 650806 Ross Hardison, PennState a57ffb2c0283a659ea991a9ad2d9931e https://www.encodeproject.org/files/ENCFF001YEG/@@download/ENCFF001YEG.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF674KCE bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MFJ, ENCFF806TVZ 4008618409 ENCODE Processing Pipeline 999c5f7eab8db9761d9e04c213a3d904 https://www.encodeproject.org/files/ENCFF674KCE/@@download/ENCFF674KCE.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF594UYN bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MFF, ENCFF806TVZ 3324878650 ENCODE Processing Pipeline 0486b0d1bcfe33ba916cf5cc1577cac6 https://www.encodeproject.org/files/ENCFF594UYN/@@download/ENCFF594UYN.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF589SPH bam unfiltered alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MFF, ENCFF018NEO 4044789093 ENCODE Processing Pipeline 32a9ffe9d880ae45704f5909c3aa9d0a https://www.encodeproject.org/files/ENCFF589SPH/@@download/ENCFF589SPH.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF818EIO bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MFF, ENCFF018NEO 3037687469 ENCODE Processing Pipeline 76d26584756b1e6623611103e9570f81 https://www.encodeproject.org/files/ENCFF818EIO/@@download/ENCFF818EIO.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF709CFA bam unfiltered alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MFJ, ENCFF018NEO 4372720781 ENCODE Processing Pipeline 03d15b8460cca347def3711619e47211 https://www.encodeproject.org/files/ENCFF709CFA/@@download/ENCFF709CFA.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF177JKM bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MFJ, ENCFF018NEO 3345440789 ENCODE Processing Pipeline 64f32f7a40ce94dfeb20144acbbb8d86 https://www.encodeproject.org/files/ENCFF177JKM/@@download/ENCFF177JKM.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF160LIX bed narrowPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF177JKM, ENCFF769SND, ENCFF887RWQ 3213846 ENCODE Processing Pipeline 67b97acf2458b547e69fd88c5328da72 https://www.encodeproject.org/files/ENCFF160LIX/@@download/ENCFF160LIX.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF393REM bed narrowPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF769SND, ENCFF818EIO, ENCFF887RWQ 3575570 ENCODE Processing Pipeline ef24aaac0e6df9d3d036a75dd01c3fc6 https://www.encodeproject.org/files/ENCFF393REM/@@download/ENCFF393REM.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF065PJH bed narrowPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF177JKM, ENCFF769SND, ENCFF818EIO, ENCFF887RWQ 3404745 ENCODE Processing Pipeline 93d73acc8101cca985c4ae06398b7aea https://www.encodeproject.org/files/ENCFF065PJH/@@download/ENCFF065PJH.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF320HVK bigBed narrowPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF160LIX 6598539 ENCODE Processing Pipeline 225e17964058fc09380b5c731d2b026c https://www.encodeproject.org/files/ENCFF320HVK/@@download/ENCFF320HVK.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF625FJM bigWig signal p-value ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF177JKM, ENCFF769SND, ENCFF887RWQ 1099763385 ENCODE Processing Pipeline 82ea070bac249904c48fd7b1c3875618 https://www.encodeproject.org/files/ENCFF625FJM/@@download/ENCFF625FJM.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF434NOS bigBed narrowPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF393REM 7653467 ENCODE Processing Pipeline 47fadc55ac044671b7674db43f1fceab https://www.encodeproject.org/files/ENCFF434NOS/@@download/ENCFF434NOS.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF535CPT bigBed narrowPeak peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF065PJH 7124534 ENCODE Processing Pipeline 6ef1a9486f2372c080331aeb03114744 https://www.encodeproject.org/files/ENCFF535CPT/@@download/ENCFF535CPT.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF819RNL bigWig signal p-value ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF769SND, ENCFF818EIO, ENCFF887RWQ 1109505320 ENCODE Processing Pipeline 0337afb6da3b0f7692815c9a256caf0d https://www.encodeproject.org/files/ENCFF819RNL/@@download/ENCFF819RNL.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF244FKX bigWig signal p-value ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF177JKM, ENCFF769SND, ENCFF818EIO, ENCFF887RWQ 1483606921 ENCODE Processing Pipeline 92187fda0707986832004a8548add0aa https://www.encodeproject.org/files/ENCFF244FKX/@@download/ENCFF244FKX.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF145ZQS bigWig fold change over control ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF177JKM, ENCFF769SND, ENCFF887RWQ 1194813598 ENCODE Processing Pipeline 732cdacb1b0f6745a7ee741ff7636445 https://www.encodeproject.org/files/ENCFF145ZQS/@@download/ENCFF145ZQS.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF964KAZ bigWig fold change over control ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF769SND, ENCFF818EIO, ENCFF887RWQ 1258998721 ENCODE Processing Pipeline 8f4373c56a24fb0020cfedd46b0ba003 https://www.encodeproject.org/files/ENCFF964KAZ/@@download/ENCFF964KAZ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF410HES bigWig fold change over control ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF177JKM, ENCFF769SND, ENCFF818EIO, ENCFF887RWQ 1738283682 ENCODE Processing Pipeline 490b0cc5762a1b81e28ad4fe7759277f https://www.encodeproject.org/files/ENCFF410HES/@@download/ENCFF410HES.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF425JHS bigBed narrowPeak replicated peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF987VEJ 5870905 ENCODE Processing Pipeline 0221c8ec564f9e2d209654d299d7a94e https://www.encodeproject.org/files/ENCFF425JHS/@@download/ENCFF425JHS.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF987VEJ bed narrowPeak replicated peaks ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF065PJH, ENCFF160LIX, ENCFF393REM 3791041 ENCODE Processing Pipeline 9746850e45796fbf2a6429a7af382634 https://www.encodeproject.org/files/ENCFF987VEJ/@@download/ENCFF987VEJ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001LMD bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LMJ 281389329 Bing Ren, UCSD dcb9d5cf0381a3661c1cf8e13933059a https://www.encodeproject.org/files/ENCFF001LMD/@@download/ENCFF001LMD.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMF bigBed broadPeak peaks ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAL 289047 Bing Ren, UCSD 68ff05f4dd571e4af8ed7da67516967b https://www.encodeproject.org/files/ENCFF001LMF/@@download/ENCFF001LMF.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMH bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LMR 613203479 Bing Ren, UCSD d640afd8347e851e7dee458b2bee3319 https://www.encodeproject.org/files/ENCFF001LMH/@@download/ENCFF001LMH.bam mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMJ fastq reads ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 275637452 Bing Ren, UCSD 65cf38c7ece1bb54efb2f51bb5a6dce8 https://www.encodeproject.org/files/ENCFF001LMJ/@@download/ENCFF001LMJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF044CWG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMK bigWig signal ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LMD, ENCFF001LMH 65684437 Bing Ren, UCSD f262520277eca9f39ea94161fb36f5e2 https://www.encodeproject.org/files/ENCFF001LMK/@@download/ENCFF001LMK.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001LMR fastq reads ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 604397421 Bing Ren, UCSD 3363bb3a2dec3ece411047fa6e36a88e https://www.encodeproject.org/files/ENCFF001LMR/@@download/ENCFF001LMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KLI/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001YAL bed broadPeak peaks ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LMD, ENCFF001LMH 173113 Bing Ren, UCSD dbaecc1bbab106ea4bf3bb2d123163fd https://www.encodeproject.org/files/ENCFF001YAL/@@download/ENCFF001YAL.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF839KAL bam unfiltered alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LMR, ENCFF018NEO 655966669 ENCODE Processing Pipeline 9f12adb3cd2771769afeedc635def3a8 https://www.encodeproject.org/files/ENCFF839KAL/@@download/ENCFF839KAL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF685KES bam unfiltered alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LMJ, ENCFF018NEO 303039135 ENCODE Processing Pipeline c5396f92f020a1e18924bdb3ae2af68e https://www.encodeproject.org/files/ENCFF685KES/@@download/ENCFF685KES.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF550JJH bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LMJ, ENCFF018NEO 137276616 ENCODE Processing Pipeline 8d9ba49148b5a9f9bbf0e0856e69470e https://www.encodeproject.org/files/ENCFF550JJH/@@download/ENCFF550JJH.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF884CQM bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LMR, ENCFF018NEO 279244440 ENCODE Processing Pipeline 58f62f754ed950aace4605ea17809213 https://www.encodeproject.org/files/ENCFF884CQM/@@download/ENCFF884CQM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF001ZIB fastq reads ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 1 45 single-ended 1706725308 Ross Hardison, PennState 2a42d5937502dd3aac061c7b06e390ff https://www.encodeproject.org/files/ENCFF001ZIB/@@download/ENCFF001ZIB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZID bigWig signal ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 1 4834393189 Ross Hardison, PennState 47ab70cc71bd983ff3fc577f47d2a04c https://www.encodeproject.org/files/ENCFF001ZID/@@download/ENCFF001ZID.bigWig mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF001ZIH fastq reads ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 1 45 single-ended 1734882829 Ross Hardison, PennState acfbf3eaab2527e2b855fb12eec2fe9e https://www.encodeproject.org/files/ENCFF001ZIH/@@download/ENCFF001ZIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZJI bigWig signal ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 1 4769350911 Ross Hardison, PennState 7ba706c18b85770c26c3b408bb9b0917 https://www.encodeproject.org/files/ENCFF001ZJI/@@download/ENCFF001ZJI.bigWig mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO insufficient read depth ENCFF001ZJK bam alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 ENCFF001ZIB 2120084239 Ross Hardison, PennState aef54772dd2bfbff545525c1bf84c83d https://www.encodeproject.org/files/ENCFF001ZJK/@@download/ENCFF001ZJK.bam mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZJL bam alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 ENCFF001ZIH 2077293711 Ross Hardison, PennState e37965fb3b7c3ddbca45dbd386e80977 https://www.encodeproject.org/files/ENCFF001ZJL/@@download/ENCFF001ZJL.bam mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZJM bigBed broadPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 1 2132112 Ross Hardison, PennState 5baa29e7289b7fd587f0264a82aea7ac https://www.encodeproject.org/files/ENCFF001ZJM/@@download/ENCFF001ZJM.bigBed mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF001ZJN bigBed broadPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 1 2231405 Ross Hardison, PennState d3a6a668cb1e6d76fb5dbc27d6578f1f https://www.encodeproject.org/files/ENCFF001ZJN/@@download/ENCFF001ZJN.bigBed mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO insufficient read depth ENCFF001ZJJ bigWig signal ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 5598254561 Ross Hardison, PennState d01344a0389e04a5e152cf23d2d842f7 https://www.encodeproject.org/files/ENCFF001ZJJ/@@download/ENCFF001ZJJ.bigWig mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF001ZJO bigBed broadPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2169764 Ross Hardison, PennState 0a75e9cebc39b16e0e0a41356011ba82 https://www.encodeproject.org/files/ENCFF001ZJO/@@download/ENCFF001ZJO.bigBed mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF001ZJP bam alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 3987463575 Ross Hardison, PennState fa81ba1d7a9936f4cd166952567b76ca https://www.encodeproject.org/files/ENCFF001ZJP/@@download/ENCFF001ZJP.bam mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO insufficient read depth ENCFF871XXY bed broadPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 1 ENCFF001ZJN 1401714 ENCODE Consortium 1e469c3e911b6db910eb3d52e4635e0c https://www.encodeproject.org/files/ENCFF871XXY/@@download/ENCFF871XXY.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF945LRL bed broadPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE ENCFF001ZJO 1395166 ENCODE Consortium e2eb1d1ef22eb71f648aa1d8c7edc7e3 https://www.encodeproject.org/files/ENCFF945LRL/@@download/ENCFF945LRL.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF601LTI bed broadPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 1 ENCFF001ZJM 1334483 ENCODE Consortium 9c4f6062e12a4789a9007424b740c736 https://www.encodeproject.org/files/ENCFF601LTI/@@download/ENCFF601LTI.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF730IGA bam unfiltered alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 45 ENCFF001ZIB, ENCFF018NEO 2243554651 ENCODE Processing Pipeline 757155173bc8b2598517402ad1958805 https://www.encodeproject.org/files/ENCFF730IGA/@@download/ENCFF730IGA.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF822MMC bam unfiltered alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 45 ENCFF001ZIH, ENCFF018NEO 2265310594 ENCODE Processing Pipeline 05c1f1d9950648f76fb1670b4f875ed9 https://www.encodeproject.org/files/ENCFF822MMC/@@download/ENCFF822MMC.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF511NEV bam alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 45 ENCFF001ZIB, ENCFF018NEO 1700998085 ENCODE Processing Pipeline c6cf19811e81b42ad502b2e9c1ce433e https://www.encodeproject.org/files/ENCFF511NEV/@@download/ENCFF511NEV.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF886BUM bam alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 45 ENCFF001ZIH, ENCFF018NEO 1682102136 ENCODE Processing Pipeline 4d28e089dd96f250934e03b62efd0745 https://www.encodeproject.org/files/ENCFF886BUM/@@download/ENCFF886BUM.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF908WED bigBed narrowPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 ENCFF788VIR 5956647 ENCODE Processing Pipeline f940831b0e6ec5ae18c5ea25a9710d33 https://www.encodeproject.org/files/ENCFF908WED/@@download/ENCFF908WED.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF574JGD bigBed narrowPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 ENCFF239HEB 6155649 ENCODE Processing Pipeline e6e8f93999185dbf598c0f896de5efc5 https://www.encodeproject.org/files/ENCFF574JGD/@@download/ENCFF574JGD.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF256AES bigWig signal p-value ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1, 2 ENCFF111OFQ, ENCFF511NEV, ENCFF666VRA, ENCFF886BUM 1135513091 ENCODE Processing Pipeline cfa3abef360c6ee9beea94f56eb3ea4a https://www.encodeproject.org/files/ENCFF256AES/@@download/ENCFF256AES.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF695IAM bigBed narrowPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1, 2 ENCFF423ZVR 10510601 ENCODE Processing Pipeline 9468a53340b9fc8de87cdd292fa73fd4 https://www.encodeproject.org/files/ENCFF695IAM/@@download/ENCFF695IAM.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF335EWZ bigWig signal p-value ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 ENCFF111OFQ, ENCFF886BUM 513348141 ENCODE Processing Pipeline b023ed0e6cac58685bc0d9f2c5249649 https://www.encodeproject.org/files/ENCFF335EWZ/@@download/ENCFF335EWZ.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF893YGC bigWig fold change over control ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 ENCFF111OFQ, ENCFF886BUM 575580420 ENCODE Processing Pipeline 834d783f19d8efd7262430af5e835c10 https://www.encodeproject.org/files/ENCFF893YGC/@@download/ENCFF893YGC.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF423ZVR bed narrowPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1, 2 ENCFF111OFQ, ENCFF511NEV, ENCFF666VRA, ENCFF886BUM 4442258 ENCODE Processing Pipeline be03d5e333e8444112cf0cb5d862341f https://www.encodeproject.org/files/ENCFF423ZVR/@@download/ENCFF423ZVR.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF653MPO bigWig signal p-value ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 ENCFF511NEV, ENCFF666VRA 606806303 ENCODE Processing Pipeline 53e14f14af3fdd811b35648ef9a3c4b6 https://www.encodeproject.org/files/ENCFF653MPO/@@download/ENCFF653MPO.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF491TPQ bigWig fold change over control ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 ENCFF511NEV, ENCFF666VRA 594705287 ENCODE Processing Pipeline 2482b6eb08dde9f257423692c213c7f9 https://www.encodeproject.org/files/ENCFF491TPQ/@@download/ENCFF491TPQ.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF012GHA bigWig fold change over control ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1, 2 ENCFF111OFQ, ENCFF511NEV, ENCFF666VRA, ENCFF886BUM 1134720363 ENCODE Processing Pipeline 9bb408977f034e6472c10ef0b0ef57e1 https://www.encodeproject.org/files/ENCFF012GHA/@@download/ENCFF012GHA.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF788VIR bed narrowPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 ENCFF511NEV, ENCFF666VRA 3195921 ENCODE Processing Pipeline 6713af258a94df0e9accf203484db677 https://www.encodeproject.org/files/ENCFF788VIR/@@download/ENCFF788VIR.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF239HEB bed narrowPeak peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 ENCFF111OFQ, ENCFF886BUM 3274519 ENCODE Processing Pipeline 7e151cf2e135c12a31ea98be7ef0391e https://www.encodeproject.org/files/ENCFF239HEB/@@download/ENCFF239HEB.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF988MSF bed narrowPeak replicated peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1, 2 ENCFF239HEB, ENCFF423ZVR, ENCFF788VIR 2483415 ENCODE Processing Pipeline 55c30544d6ab06eb750dbf2e60a12907 https://www.encodeproject.org/files/ENCFF988MSF/@@download/ENCFF988MSF.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF561LIM bigBed narrowPeak replicated peaks ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1, 2 ENCFF988MSF 4919846 ENCODE Processing Pipeline 6ccdb079b1cd5a97c1bd7832d4962f6e https://www.encodeproject.org/files/ENCFF561LIM/@@download/ENCFF561LIM.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF002AMP fastq reads ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1213304724 Bing Ren, UCSD 97a8bed49509adf8849d7cf7c93eccc0 SRA:SRR3652103 https://www.encodeproject.org/files/ENCFF002AMP/@@download/ENCFF002AMP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQD/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, low read depth ENCFF002AMS fastq reads ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 2069266512 Bing Ren, UCSD f6cf4a86a313fb6b0a477d3b14252438 SRA:SRR3652102 https://www.encodeproject.org/files/ENCFF002AMS/@@download/ENCFF002AMS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQH/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, low read depth ENCFF157ADX bam alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMS, ENCFF806TVZ 1247182851 ENCODE Processing Pipeline aadc2b6fd7779b937c169053accb3619 https://www.encodeproject.org/files/ENCFF157ADX/@@download/ENCFF157ADX.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF318LNX bam alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMP, ENCFF806TVZ 795639397 ENCODE Processing Pipeline 3c3e48e3ad955c3e26ae8d8f1fdee44a https://www.encodeproject.org/files/ENCFF318LNX/@@download/ENCFF318LNX.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF884UTH bed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF157ADX, ENCFF318LNX, ENCFF999ZTB 483391 ENCODE Processing Pipeline 65ec868a0128c0015930ba8ab0e8e16d https://www.encodeproject.org/files/ENCFF884UTH/@@download/ENCFF884UTH.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF011SWY bigBed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF624FCF 1639724 ENCODE Processing Pipeline 465b013e7bf9c209f91ab3c044eb0f08 https://www.encodeproject.org/files/ENCFF011SWY/@@download/ENCFF011SWY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF695EUR bigBed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF884UTH 1544433 ENCODE Processing Pipeline 62a9d9c740f4aab6a9fea50c1dc5eb34 https://www.encodeproject.org/files/ENCFF695EUR/@@download/ENCFF695EUR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF485TFI bed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF157ADX, ENCFF999ZTB 499319 ENCODE Processing Pipeline cb0e8dec409f845433c3fe5770c793c9 https://www.encodeproject.org/files/ENCFF485TFI/@@download/ENCFF485TFI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF718GCJ bigWig signal p-value ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF318LNX, ENCFF999ZTB 250585118 ENCODE Processing Pipeline 3cc0b65d4ad5c9402d34bbf162818d09 https://www.encodeproject.org/files/ENCFF718GCJ/@@download/ENCFF718GCJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF624FCF bed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF318LNX, ENCFF999ZTB 522085 ENCODE Processing Pipeline 2834591395f62b50d1d9544a09ba24eb https://www.encodeproject.org/files/ENCFF624FCF/@@download/ENCFF624FCF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF429PEP bigBed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF485TFI 1591080 ENCODE Processing Pipeline 24968d41be76336ec9b983a909b199f5 https://www.encodeproject.org/files/ENCFF429PEP/@@download/ENCFF429PEP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF159PVM bigWig signal p-value ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF157ADX, ENCFF999ZTB 347656678 ENCODE Processing Pipeline cdc4775cfd78f87609e31a99fb5bfe06 https://www.encodeproject.org/files/ENCFF159PVM/@@download/ENCFF159PVM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF339TOL bigWig signal p-value ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF157ADX, ENCFF318LNX, ENCFF999ZTB 329296136 ENCODE Processing Pipeline 3a98744a0b62f826766da7c11c89a903 https://www.encodeproject.org/files/ENCFF339TOL/@@download/ENCFF339TOL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF910NUL bigWig fold change over control ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF318LNX, ENCFF999ZTB 255309908 ENCODE Processing Pipeline e7cf8138d522e919ff0e61faae392ae3 https://www.encodeproject.org/files/ENCFF910NUL/@@download/ENCFF910NUL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF246WKB bigWig fold change over control ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF157ADX, ENCFF999ZTB 365866430 ENCODE Processing Pipeline 7ffe4c0861e680dfd8db036e9541da8a https://www.encodeproject.org/files/ENCFF246WKB/@@download/ENCFF246WKB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF644AYP bigWig fold change over control ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF157ADX, ENCFF318LNX, ENCFF999ZTB 512481309 ENCODE Processing Pipeline 9744bf4b6732dede37da80b3da7066a0 https://www.encodeproject.org/files/ENCFF644AYP/@@download/ENCFF644AYP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF083GUE bigBed narrowPeak replicated peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF888VOA 1463925 ENCODE Processing Pipeline 1d8ccf1a4f47e124d50e7d1db08bb7cb https://www.encodeproject.org/files/ENCFF083GUE/@@download/ENCFF083GUE.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF888VOA bed narrowPeak replicated peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF485TFI, ENCFF624FCF, ENCFF884UTH 600431 ENCODE Processing Pipeline cce86f17b5ead61444793814420adeaa https://www.encodeproject.org/files/ENCFF888VOA/@@download/ENCFF888VOA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF608QFC bam unfiltered alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMS, ENCFF018NEO 2075762701 ENCODE Processing Pipeline c2f80084bbd877a03ea58e847177a575 https://www.encodeproject.org/files/ENCFF608QFC/@@download/ENCFF608QFC.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF610QCN bam unfiltered alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMP, ENCFF018NEO 1231721328 ENCODE Processing Pipeline 8d6b8ea3d83f1205f59e079ad11a1670 https://www.encodeproject.org/files/ENCFF610QCN/@@download/ENCFF610QCN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF761GFG bam alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMP, ENCFF018NEO 795571429 ENCODE Processing Pipeline 4ae7e4807ab120c2cbb0a09c8620faff https://www.encodeproject.org/files/ENCFF761GFG/@@download/ENCFF761GFG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF412RVM bam alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMS, ENCFF018NEO 1247018237 ENCODE Processing Pipeline 0599be8feb4fddeafa3bfcac1f06bafb https://www.encodeproject.org/files/ENCFF412RVM/@@download/ENCFF412RVM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF816SNM bed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF310BPU, ENCFF412RVM, ENCFF761GFG, ENCFF957ZHQ 480956 ENCODE Processing Pipeline 001d8800c483fa5cb6f5d73e13ff5b82 https://www.encodeproject.org/files/ENCFF816SNM/@@download/ENCFF816SNM.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF604GVN bigBed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF816SNM 1528110 ENCODE Processing Pipeline 21daf711d5bff8f109eb5aeca45b6fa8 https://www.encodeproject.org/files/ENCFF604GVN/@@download/ENCFF604GVN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF459MVK bigBed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF643LPQ 1652578 ENCODE Processing Pipeline d4dd39cebc78ebd259c7efa30628d98a https://www.encodeproject.org/files/ENCFF459MVK/@@download/ENCFF459MVK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF703LWI bigWig signal p-value ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310BPU, ENCFF761GFG, ENCFF957ZHQ 339537249 ENCODE Processing Pipeline d755061b3f925439f7814af5252a17f0 https://www.encodeproject.org/files/ENCFF703LWI/@@download/ENCFF703LWI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF520NVE bed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF412RVM, ENCFF957ZHQ 411946 ENCODE Processing Pipeline 71f7e82460dc37c49c44c78b2cc9d3f9 https://www.encodeproject.org/files/ENCFF520NVE/@@download/ENCFF520NVE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF628QXN bigBed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF520NVE 1383202 ENCODE Processing Pipeline fef0ecac458a7fd34df590da2f6f3429 https://www.encodeproject.org/files/ENCFF628QXN/@@download/ENCFF628QXN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF643LPQ bed narrowPeak peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310BPU, ENCFF761GFG, ENCFF957ZHQ 527123 ENCODE Processing Pipeline 4868cfbfc4061d6d8d04dff73e70487b https://www.encodeproject.org/files/ENCFF643LPQ/@@download/ENCFF643LPQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF432CNP bigWig signal p-value ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF412RVM, ENCFF957ZHQ 184071158 ENCODE Processing Pipeline 6bdc6c71c65d6e91b1c2e62e12ddbd2b https://www.encodeproject.org/files/ENCFF432CNP/@@download/ENCFF432CNP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF598KST bigWig signal p-value ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF310BPU, ENCFF412RVM, ENCFF761GFG, ENCFF957ZHQ 342685493 ENCODE Processing Pipeline ed99600b4402cf28d3ce0acfc1f3a9fe https://www.encodeproject.org/files/ENCFF598KST/@@download/ENCFF598KST.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF510NON bed narrowPeak replicated peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF520NVE, ENCFF643LPQ, ENCFF816SNM 593480 ENCODE Processing Pipeline cc55ba93609879281d3d76d303c6a0db https://www.encodeproject.org/files/ENCFF510NON/@@download/ENCFF510NON.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF612KZF bigWig fold change over control ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310BPU, ENCFF761GFG, ENCFF957ZHQ 262511747 ENCODE Processing Pipeline 1f0a9fcdf2dd63fd5e8e3a4baa89387a https://www.encodeproject.org/files/ENCFF612KZF/@@download/ENCFF612KZF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF118SNE bigWig fold change over control ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF310BPU, ENCFF412RVM, ENCFF761GFG, ENCFF957ZHQ 533469796 ENCODE Processing Pipeline c14855cd558ef8548b6fb68c2dda9ef0 https://www.encodeproject.org/files/ENCFF118SNE/@@download/ENCFF118SNE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF393ISB bigWig fold change over control ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF412RVM, ENCFF957ZHQ 330184937 ENCODE Processing Pipeline 4ad297d6737bd27720f9bb8f3788f623 https://www.encodeproject.org/files/ENCFF393ISB/@@download/ENCFF393ISB.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF635SLM bigBed narrowPeak replicated peaks ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF510NON 1438709 ENCODE Processing Pipeline a6ab9f537916c806666645ae17049751 https://www.encodeproject.org/files/ENCFF635SLM/@@download/ENCFF635SLM.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002BGK fastq reads ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1917106918 Bing Ren, UCSD b8342c767f712d8de4651a4454662289 SRA:SRR3652848 https://www.encodeproject.org/files/ENCFF002BGK/@@download/ENCFF002BGK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUT/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, control low read depth ENCFF002BGG fastq reads ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1975532824 Bing Ren, UCSD 02691dfabc885a6469bb27ea6e4d0663 SRA:SRR3652849 https://www.encodeproject.org/files/ENCFF002BGG/@@download/ENCFF002BGG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUU/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, control low read depth ENCFF585VQZ bam alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGG, ENCFF806TVZ 1544902324 ENCODE Processing Pipeline 4142b3a1b0b41f9c79ad9b887bf01cd7 https://www.encodeproject.org/files/ENCFF585VQZ/@@download/ENCFF585VQZ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF032RGQ bam alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGK, ENCFF806TVZ 1184495343 ENCODE Processing Pipeline 6be9e99e126ad62eb40211b3f52fd1a3 https://www.encodeproject.org/files/ENCFF032RGQ/@@download/ENCFF032RGQ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF098RJS bed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032RGQ, ENCFF807GND, ENCFF841RBB 1085347 ENCODE Processing Pipeline a0315d204237e497e20fce1b68b2c658 https://www.encodeproject.org/files/ENCFF098RJS/@@download/ENCFF098RJS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF174LIS bed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF585VQZ, ENCFF807GND, ENCFF841RBB 949045 ENCODE Processing Pipeline e684cf43d53b2cacf7dae538e37f38ca https://www.encodeproject.org/files/ENCFF174LIS/@@download/ENCFF174LIS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF047CHU bigBed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF712FBS 2657426 ENCODE Processing Pipeline 087cdfaf0463a5663f3000dd9519ff33 https://www.encodeproject.org/files/ENCFF047CHU/@@download/ENCFF047CHU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF314MEH bigBed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF098RJS 3171916 ENCODE Processing Pipeline 7b9801a873c682c3de895bfd288887ce https://www.encodeproject.org/files/ENCFF314MEH/@@download/ENCFF314MEH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF276LPK bigBed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF174LIS 2825466 ENCODE Processing Pipeline 49b9c483e08a4dad6f6bcf81a18d75d0 https://www.encodeproject.org/files/ENCFF276LPK/@@download/ENCFF276LPK.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF712FBS bed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032RGQ, ENCFF585VQZ, ENCFF807GND, ENCFF841RBB 894009 ENCODE Processing Pipeline accbe3a84d2db52f3086b8d643a0a4e4 https://www.encodeproject.org/files/ENCFF712FBS/@@download/ENCFF712FBS.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF141HWB bigWig signal p-value ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032RGQ, ENCFF807GND, ENCFF841RBB 399832925 ENCODE Processing Pipeline 9146a8d70dc7e8f0440474bed72a1507 https://www.encodeproject.org/files/ENCFF141HWB/@@download/ENCFF141HWB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF076ZWG bigWig signal p-value ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032RGQ, ENCFF585VQZ, ENCFF807GND, ENCFF841RBB 506734002 ENCODE Processing Pipeline f51da6a1d214bb73e17e0d4406fb11b7 https://www.encodeproject.org/files/ENCFF076ZWG/@@download/ENCFF076ZWG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF016FAF bigWig signal p-value ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF585VQZ, ENCFF807GND, ENCFF841RBB 507453401 ENCODE Processing Pipeline 22d6e0f7a5a83f9de2cccf3fe2c8b853 https://www.encodeproject.org/files/ENCFF016FAF/@@download/ENCFF016FAF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF870GOQ bigWig fold change over control ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032RGQ, ENCFF807GND, ENCFF841RBB 407107986 ENCODE Processing Pipeline bf0e00294fb2d22c670ae458ea2c3246 https://www.encodeproject.org/files/ENCFF870GOQ/@@download/ENCFF870GOQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF404XMP bigWig fold change over control ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF585VQZ, ENCFF807GND, ENCFF841RBB 500602735 ENCODE Processing Pipeline 3cc4d47131bf524a285e8a9986839bc6 https://www.encodeproject.org/files/ENCFF404XMP/@@download/ENCFF404XMP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF359NNR bigWig fold change over control ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032RGQ, ENCFF585VQZ, ENCFF807GND, ENCFF841RBB 715502344 ENCODE Processing Pipeline 140a3a6f49ad6273ac2ed30da0f1856f https://www.encodeproject.org/files/ENCFF359NNR/@@download/ENCFF359NNR.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF543UFE bed narrowPeak replicated peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098RJS, ENCFF174LIS, ENCFF712FBS 1160686 ENCODE Processing Pipeline e35c17d955a3aa5c3304690cc444a0d9 https://www.encodeproject.org/files/ENCFF543UFE/@@download/ENCFF543UFE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF326CHH bigBed narrowPeak replicated peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF543UFE 2506370 ENCODE Processing Pipeline 77520dc9b522303b9b6f775f33fd8305 https://www.encodeproject.org/files/ENCFF326CHH/@@download/ENCFF326CHH.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF898YSN bam unfiltered alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGG, ENCFF018NEO 1823351905 ENCODE Processing Pipeline 8b49c5f2a2a694543172ce52f062ce8f https://www.encodeproject.org/files/ENCFF898YSN/@@download/ENCFF898YSN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF319CHO bam unfiltered alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGK, ENCFF018NEO 1736214941 ENCODE Processing Pipeline 46f869fa6f5cd8b1e8a7cfb72c43af4d https://www.encodeproject.org/files/ENCFF319CHO/@@download/ENCFF319CHO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF171KXP bam alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGG, ENCFF018NEO 1219596226 ENCODE Processing Pipeline b6118e0285a55d5fa9e59589a492d00d https://www.encodeproject.org/files/ENCFF171KXP/@@download/ENCFF171KXP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF468XEU bam alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGK, ENCFF018NEO 933472055 ENCODE Processing Pipeline b1e290e819f7d2c7590bdf3799550382 https://www.encodeproject.org/files/ENCFF468XEU/@@download/ENCFF468XEU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF238FGK bed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF468XEU, ENCFF804FRH 1083834 ENCODE Processing Pipeline 39d01b363a20e566302c3a8480631784 https://www.encodeproject.org/files/ENCFF238FGK/@@download/ENCFF238FGK.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF202DXP bed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF171KXP, ENCFF804FRH 737758 ENCODE Processing Pipeline 6c39dd337b449cccbd1bbb0e78a6e673 https://www.encodeproject.org/files/ENCFF202DXP/@@download/ENCFF202DXP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF248LEI bigBed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238FGK 3163531 ENCODE Processing Pipeline ae26d3faeca362216929333ec222f19b https://www.encodeproject.org/files/ENCFF248LEI/@@download/ENCFF248LEI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF684KYF bed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF171KXP, ENCFF468XEU, ENCFF804FRH 893650 ENCODE Processing Pipeline ab49cfded80e825546896f8f5f57aa4f https://www.encodeproject.org/files/ENCFF684KYF/@@download/ENCFF684KYF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF129MQR bigBed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF202DXP 2279627 ENCODE Processing Pipeline df5e6893563d05289c9f294576fd471d https://www.encodeproject.org/files/ENCFF129MQR/@@download/ENCFF129MQR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF964LXX bigBed narrowPeak peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF684KYF 2654792 ENCODE Processing Pipeline a0242930850c6563a12e6fd8dc1e54ba https://www.encodeproject.org/files/ENCFF964LXX/@@download/ENCFF964LXX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF009NRT bigWig signal p-value ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF468XEU, ENCFF804FRH 435462224 ENCODE Processing Pipeline cbc02ad4f5e3c8631c91f763034d8b7e https://www.encodeproject.org/files/ENCFF009NRT/@@download/ENCFF009NRT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF821FIG bigWig signal p-value ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF171KXP, ENCFF804FRH 244806372 ENCODE Processing Pipeline 2be15ae259e637905dbe746ca514f096 https://www.encodeproject.org/files/ENCFF821FIG/@@download/ENCFF821FIG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF459BXJ bigWig signal p-value ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF171KXP, ENCFF468XEU, ENCFF804FRH 498897067 ENCODE Processing Pipeline 7c242fd832ce295e064cffe2fd23c581 https://www.encodeproject.org/files/ENCFF459BXJ/@@download/ENCFF459BXJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF060EET bigWig fold change over control ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF468XEU, ENCFF804FRH 395749185 ENCODE Processing Pipeline 3eb724e2d96076f497ae335090df76ea https://www.encodeproject.org/files/ENCFF060EET/@@download/ENCFF060EET.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF718NAG bigWig fold change over control ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF171KXP, ENCFF804FRH 383977444 ENCODE Processing Pipeline d0f5e5dacb909fb518970e8bf8c94454 https://www.encodeproject.org/files/ENCFF718NAG/@@download/ENCFF718NAG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF690UIX bigWig fold change over control ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF171KXP, ENCFF468XEU, ENCFF804FRH 700636974 ENCODE Processing Pipeline 1899be417dea59250cfb6d8a7753321c https://www.encodeproject.org/files/ENCFF690UIX/@@download/ENCFF690UIX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF344VVO bed narrowPeak replicated peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF202DXP, ENCFF238FGK, ENCFF684KYF 1138067 ENCODE Processing Pipeline adabec4d72a38ab451fdfc08fde7b9da https://www.encodeproject.org/files/ENCFF344VVO/@@download/ENCFF344VVO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF188GUB bigBed narrowPeak replicated peaks ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF344VVO 2455354 ENCODE Processing Pipeline cc99dca4eda4515751c1c5a5f941ade3 https://www.encodeproject.org/files/ENCFF188GUB/@@download/ENCFF188GUB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF002AGV fastq reads ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 538226987 Bing Ren, UCSD a3c48fd1936d31c62582923f22ee5e71 SRA:SRR3651301 https://www.encodeproject.org/files/ENCFF002AGV/@@download/ENCFF002AGV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQR/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002CBZ fastq reads ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 711455962 Bing Ren, UCSD be30ba64a52c8b9b452fcdbea35cab10 SRA:SRR3651299 https://www.encodeproject.org/files/ENCFF002CBZ/@@download/ENCFF002CBZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQQ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF456ABX fastq reads ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 904957529 Bing Ren, UCSD 1edc861448bb18cce51a61a83b1e8f4d SRA:SRR3651302 https://www.encodeproject.org/files/ENCFF456ABX/@@download/ENCFF456ABX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQR/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF146ZPB fastq reads ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 320708394 Bing Ren, UCSD c26a35719159c47b7e5aa96492940770 SRA:SRR3651300 https://www.encodeproject.org/files/ENCFF146ZPB/@@download/ENCFF146ZPB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQQ/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF603KJV bam alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGV, ENCFF456ABX, ENCFF806TVZ 1135821662 ENCODE Processing Pipeline c15d5262ac4547666485edda3322a430 https://www.encodeproject.org/files/ENCFF603KJV/@@download/ENCFF603KJV.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF862GWG bam alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002CBZ, ENCFF146ZPB, ENCFF806TVZ 1072700563 ENCODE Processing Pipeline d6a2749f8dfe1f50976894a13cdb423a https://www.encodeproject.org/files/ENCFF862GWG/@@download/ENCFF862GWG.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF679HSH bigBed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF379BVB 2298015 ENCODE Processing Pipeline f9ed3636c3a9bb6874b24f0527035605 https://www.encodeproject.org/files/ENCFF679HSH/@@download/ENCFF679HSH.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF611NML bigBed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF192CUF 2112459 ENCODE Processing Pipeline 9d692e366b255dfe9edd9fef3142b0d8 https://www.encodeproject.org/files/ENCFF611NML/@@download/ENCFF611NML.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF586BIU bigBed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF082WQI 1661334 ENCODE Processing Pipeline e2a6a93449d6d79960cd5a0e4a329824 https://www.encodeproject.org/files/ENCFF586BIU/@@download/ENCFF586BIU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF082WQI bed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF603KJV, ENCFF791KJV 700436 ENCODE Processing Pipeline a29bc1d9d90c374648bc81c53763ac62 https://www.encodeproject.org/files/ENCFF082WQI/@@download/ENCFF082WQI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF053HOY bigWig signal p-value ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF862GWG 517257387 ENCODE Processing Pipeline ae812c9e54feee2c87da4209110d12f0 https://www.encodeproject.org/files/ENCFF053HOY/@@download/ENCFF053HOY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF794BGQ bigWig signal p-value ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF603KJV, ENCFF791KJV 498783205 ENCODE Processing Pipeline 4347d10500141cbab8b6c43fa74fc682 https://www.encodeproject.org/files/ENCFF794BGQ/@@download/ENCFF794BGQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF192CUF bed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF862GWG 899929 ENCODE Processing Pipeline 2bd0c1c554a40c573a94784cce45552f https://www.encodeproject.org/files/ENCFF192CUF/@@download/ENCFF192CUF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF379BVB bed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF603KJV, ENCFF791KJV, ENCFF862GWG 1046157 ENCODE Processing Pipeline 0359ff58bde218f0d52a4ceb23dd0d83 https://www.encodeproject.org/files/ENCFF379BVB/@@download/ENCFF379BVB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF604PTG bigWig signal p-value ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF603KJV, ENCFF791KJV, ENCFF862GWG 681371508 ENCODE Processing Pipeline 4e06158066d9f030b15888264667de2a https://www.encodeproject.org/files/ENCFF604PTG/@@download/ENCFF604PTG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF894MLH bigWig fold change over control ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF862GWG 544593420 ENCODE Processing Pipeline ac5162ff76e46a40065c63f97805cd12 https://www.encodeproject.org/files/ENCFF894MLH/@@download/ENCFF894MLH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF464HSM bigWig fold change over control ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF603KJV, ENCFF791KJV 573856460 ENCODE Processing Pipeline f8cdfc8f702521340b3297963300afdc https://www.encodeproject.org/files/ENCFF464HSM/@@download/ENCFF464HSM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF102IIL bigWig fold change over control ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF603KJV, ENCFF791KJV, ENCFF862GWG 865915534 ENCODE Processing Pipeline 15fd74bdc159f21f054af3bee4caae0f https://www.encodeproject.org/files/ENCFF102IIL/@@download/ENCFF102IIL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF461UUN bed narrowPeak replicated peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF082WQI, ENCFF192CUF, ENCFF379BVB 332826 ENCODE Processing Pipeline da476e7da916248f8cb90c04f0939bba https://www.encodeproject.org/files/ENCFF461UUN/@@download/ENCFF461UUN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF209MUZ bigBed narrowPeak replicated peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF461UUN 860055 ENCODE Processing Pipeline 2513cac319635b226b19faf3f92a434a https://www.encodeproject.org/files/ENCFF209MUZ/@@download/ENCFF209MUZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF508DLX bam unfiltered alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002CBZ, ENCFF018NEO, ENCFF146ZPB 1386081802 ENCODE Processing Pipeline 5b15009a6628c15eeb968c23ff21cb16 https://www.encodeproject.org/files/ENCFF508DLX/@@download/ENCFF508DLX.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF338UAL bam unfiltered alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGV, ENCFF018NEO, ENCFF456ABX 1505467851 ENCODE Processing Pipeline 181e160f33f18720064105b3e51392df https://www.encodeproject.org/files/ENCFF338UAL/@@download/ENCFF338UAL.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF851TRP bam alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002CBZ, ENCFF018NEO, ENCFF146ZPB 989351374 ENCODE Processing Pipeline 6d0c154ba069e6f1f22f9934bf058439 https://www.encodeproject.org/files/ENCFF851TRP/@@download/ENCFF851TRP.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF775YDY bam alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGV, ENCFF018NEO, ENCFF456ABX 939643337 ENCODE Processing Pipeline d41f4ad57c157d10f88f0f36873eac9a https://www.encodeproject.org/files/ENCFF775YDY/@@download/ENCFF775YDY.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF296HOF bed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF419KAT, ENCFF851TRP, ENCFF955BDA 851808 ENCODE Processing Pipeline 35ebca2a1b094f5a9d2c3e076405544b https://www.encodeproject.org/files/ENCFF296HOF/@@download/ENCFF296HOF.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF831IBT bed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF419KAT, ENCFF775YDY, ENCFF955BDA 661382 ENCODE Processing Pipeline 79aef360ee86f4b10cfa3c835d17239d https://www.encodeproject.org/files/ENCFF831IBT/@@download/ENCFF831IBT.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF143XJT bed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF419KAT, ENCFF775YDY, ENCFF851TRP, ENCFF955BDA 1023251 ENCODE Processing Pipeline 7090120d4089edd41986b895a67780c5 https://www.encodeproject.org/files/ENCFF143XJT/@@download/ENCFF143XJT.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF871WZC bigBed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF296HOF 2016966 ENCODE Processing Pipeline 80b36e6127e775786ca36f0f87fd41b1 https://www.encodeproject.org/files/ENCFF871WZC/@@download/ENCFF871WZC.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF373DTD bigBed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF831IBT 1576990 ENCODE Processing Pipeline 2010718cd25494bd681d1e535ca7da60 https://www.encodeproject.org/files/ENCFF373DTD/@@download/ENCFF373DTD.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF855LFD bigBed narrowPeak peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF143XJT 2263114 ENCODE Processing Pipeline d4efcd42f101b86b6b71bd59fb568849 https://www.encodeproject.org/files/ENCFF855LFD/@@download/ENCFF855LFD.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF547NAQ bigWig signal p-value ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF419KAT, ENCFF851TRP, ENCFF955BDA 549259809 ENCODE Processing Pipeline fe31f827e0c379918f2bf428ba25801c https://www.encodeproject.org/files/ENCFF547NAQ/@@download/ENCFF547NAQ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF866ZZI bigWig signal p-value ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF419KAT, ENCFF775YDY, ENCFF851TRP, ENCFF955BDA 601271802 ENCODE Processing Pipeline 5d7c0763027ef781407938a59c7fd9a6 https://www.encodeproject.org/files/ENCFF866ZZI/@@download/ENCFF866ZZI.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF251ZQX bigWig signal p-value ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF419KAT, ENCFF775YDY, ENCFF955BDA 624547234 ENCODE Processing Pipeline 06338da235188217ff510c579d0580a6 https://www.encodeproject.org/files/ENCFF251ZQX/@@download/ENCFF251ZQX.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF128XDV bigWig fold change over control ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF419KAT, ENCFF851TRP, ENCFF955BDA 523042251 ENCODE Processing Pipeline 7ac7d1dcb1eafe8c2a4ffaac4653347f https://www.encodeproject.org/files/ENCFF128XDV/@@download/ENCFF128XDV.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF249VGQ bigWig fold change over control ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF419KAT, ENCFF775YDY, ENCFF955BDA 557604389 ENCODE Processing Pipeline b53c6d32854a1aed59f039446f184577 https://www.encodeproject.org/files/ENCFF249VGQ/@@download/ENCFF249VGQ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF183CXT bigWig fold change over control ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF419KAT, ENCFF775YDY, ENCFF851TRP, ENCFF955BDA 838452818 ENCODE Processing Pipeline 9e37711c70c10275bee0ee22ca75f1af https://www.encodeproject.org/files/ENCFF183CXT/@@download/ENCFF183CXT.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF769WNP bed narrowPeak replicated peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF143XJT, ENCFF296HOF, ENCFF831IBT 352660 ENCODE Processing Pipeline c95a6adc4bb21276d54f9058d6879c5c https://www.encodeproject.org/files/ENCFF769WNP/@@download/ENCFF769WNP.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF915VHI bigBed narrowPeak replicated peaks ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF769WNP 725011 ENCODE Processing Pipeline 16432300838ee58537966360b99ee81e https://www.encodeproject.org/files/ENCFF915VHI/@@download/ENCFF915VHI.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF185XDY bam alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF835UXD 2719816739 ENCODE Processing Pipeline 607d2ebea7b7be56585dedcba1fb8117 https://www.encodeproject.org/files/ENCFF185XDY/@@download/ENCFF185XDY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF590YBI bam alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF285GCF, ENCFF567XUZ, ENCFF806TVZ 3047461264 ENCODE Processing Pipeline 2ad64e2cfb05992262791978ac5c3827 https://www.encodeproject.org/files/ENCFF590YBI/@@download/ENCFF590YBI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF285GCF fastq reads ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2967397540 Bing Ren, UCSD eadc69ddd5c37cd00cccf57b76b9d6bc SRA:SRR3653098 https://www.encodeproject.org/files/ENCFF285GCF/@@download/ENCFF285GCF.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF835UXD fastq reads ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3202712289 Bing Ren, UCSD 2990b3effa178c1ad39cb00225b4daa9 SRA:SRR3653100 https://www.encodeproject.org/files/ENCFF835UXD/@@download/ENCFF835UXD.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF567XUZ fastq reads ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 842739277 Bing Ren, UCSD c68b06cb902f58a84a76cf73b623387e SRA:SRR3653099 https://www.encodeproject.org/files/ENCFF567XUZ/@@download/ENCFF567XUZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF418BAW/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF166GKW bigBed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF334QFA 3455862 ENCODE Processing Pipeline e4cb4911b697b9e8dbab6ad18c034beb https://www.encodeproject.org/files/ENCFF166GKW/@@download/ENCFF166GKW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF370AYN bigBed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF868TEQ 3748218 ENCODE Processing Pipeline e5993f834aede99c51fbd3fac239aad6 https://www.encodeproject.org/files/ENCFF370AYN/@@download/ENCFF370AYN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF868TEQ bed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF455EJT, ENCFF590YBI, ENCFF844LBC 1892956 ENCODE Processing Pipeline 05d7d3d2049202b091d4840345280719 https://www.encodeproject.org/files/ENCFF868TEQ/@@download/ENCFF868TEQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF234WTU bed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF185XDY, ENCFF455EJT, ENCFF590YBI, ENCFF844LBC 1420526 ENCODE Processing Pipeline 74ec173ed1aa10bda74c3addfb5c25fb https://www.encodeproject.org/files/ENCFF234WTU/@@download/ENCFF234WTU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF334QFA bed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF185XDY, ENCFF455EJT, ENCFF844LBC 1697015 ENCODE Processing Pipeline 95de052b0ed68f22377df55439eec33b https://www.encodeproject.org/files/ENCFF334QFA/@@download/ENCFF334QFA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF002YAX bigBed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF234WTU 3546547 ENCODE Processing Pipeline 9e9a7920f50d98efd084e3ef617cc590 https://www.encodeproject.org/files/ENCFF002YAX/@@download/ENCFF002YAX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF256CYF bigWig signal p-value ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF185XDY, ENCFF455EJT, ENCFF844LBC 1050322085 ENCODE Processing Pipeline b09161c09ad28b41af0bc4653c8da66d https://www.encodeproject.org/files/ENCFF256CYF/@@download/ENCFF256CYF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF420OTX bigWig signal p-value ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF455EJT, ENCFF590YBI, ENCFF844LBC 829991906 ENCODE Processing Pipeline 8a7e10b47cd68b77c58e61682e276a16 https://www.encodeproject.org/files/ENCFF420OTX/@@download/ENCFF420OTX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF153JKV bigWig signal p-value ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF185XDY, ENCFF455EJT, ENCFF590YBI, ENCFF844LBC 1227084927 ENCODE Processing Pipeline ab9f839c84bb8ac900b5b782b71b3d2a https://www.encodeproject.org/files/ENCFF153JKV/@@download/ENCFF153JKV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF030WYR bigWig fold change over control ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF185XDY, ENCFF455EJT, ENCFF844LBC 1026202356 ENCODE Processing Pipeline 2dadbb1129972433b623f5f4f1d5babd https://www.encodeproject.org/files/ENCFF030WYR/@@download/ENCFF030WYR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF114FQS bigWig fold change over control ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF455EJT, ENCFF590YBI, ENCFF844LBC 1112413416 ENCODE Processing Pipeline 3fc3d539d4f55d95bbc7a2557ac61d41 https://www.encodeproject.org/files/ENCFF114FQS/@@download/ENCFF114FQS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF638EYC bigWig fold change over control ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF185XDY, ENCFF455EJT, ENCFF590YBI, ENCFF844LBC 1589463476 ENCODE Processing Pipeline 7a862a313a232014ab17094ae27fa18b https://www.encodeproject.org/files/ENCFF638EYC/@@download/ENCFF638EYC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF038IUS bed narrowPeak replicated peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF234WTU, ENCFF334QFA, ENCFF868TEQ 1257055 ENCODE Processing Pipeline 0d1354c1f6bcbdea389f7fa975acbec9 https://www.encodeproject.org/files/ENCFF038IUS/@@download/ENCFF038IUS.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF595KSF bigBed narrowPeak replicated peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF038IUS 2649143 ENCODE Processing Pipeline 4655859f159724768f3b758c6d5fad37 https://www.encodeproject.org/files/ENCFF595KSF/@@download/ENCFF595KSF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF906LYK bam unfiltered alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF835UXD 3795457619 ENCODE Processing Pipeline 20959f37d12204e5c3a0ff476d160c56 https://www.encodeproject.org/files/ENCFF906LYK/@@download/ENCFF906LYK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF827VNJ bam unfiltered alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF285GCF, ENCFF567XUZ 4482551262 ENCODE Processing Pipeline 1d390f19a61e5a6cbee63b15d6f7a2f0 https://www.encodeproject.org/files/ENCFF827VNJ/@@download/ENCFF827VNJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF967JPU bam alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF835UXD 2719311580 ENCODE Processing Pipeline 4aa0fa5e5e67121b133fbe21871b60b1 https://www.encodeproject.org/files/ENCFF967JPU/@@download/ENCFF967JPU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF814VHW bam alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF285GCF, ENCFF567XUZ 3046922599 ENCODE Processing Pipeline a357ec1731a8e9839ce2655d6137162e https://www.encodeproject.org/files/ENCFF814VHW/@@download/ENCFF814VHW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF670JYX bed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF967JPU 1751073 ENCODE Processing Pipeline d6a89d301dc7a8868322c6bdadcff41a https://www.encodeproject.org/files/ENCFF670JYX/@@download/ENCFF670JYX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF599DWU bed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF814VHW 1649229 ENCODE Processing Pipeline 443a5eec389f34696f351fd9766c0dbd https://www.encodeproject.org/files/ENCFF599DWU/@@download/ENCFF599DWU.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF566LBV bed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF814VHW, ENCFF967JPU 2328906 ENCODE Processing Pipeline f0ee5a4327ed798c2989c1c9c6331d34 https://www.encodeproject.org/files/ENCFF566LBV/@@download/ENCFF566LBV.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF146YCS bigBed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF670JYX 3562841 ENCODE Processing Pipeline 0904cd0f6e84781ff6835a4beaf4db27 https://www.encodeproject.org/files/ENCFF146YCS/@@download/ENCFF146YCS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF827HOW bigBed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF599DWU 3294425 ENCODE Processing Pipeline 8e0bc999c58179a588501fbd86a644b3 https://www.encodeproject.org/files/ENCFF827HOW/@@download/ENCFF827HOW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF947CNG bigBed narrowPeak peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF566LBV 4491024 ENCODE Processing Pipeline 42578bc7b1568fdd3fd26ed5ff0a6298 https://www.encodeproject.org/files/ENCFF947CNG/@@download/ENCFF947CNG.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF647DXW bigWig signal p-value ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF967JPU 919776763 ENCODE Processing Pipeline 876cb1000b2a83b7563964b4fb5290ba https://www.encodeproject.org/files/ENCFF647DXW/@@download/ENCFF647DXW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF105SDT bigWig signal p-value ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF814VHW 953283070 ENCODE Processing Pipeline 2ede97e9eadb9f514f7b62d647cdc046 https://www.encodeproject.org/files/ENCFF105SDT/@@download/ENCFF105SDT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF939WAA bigWig signal p-value ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF814VHW, ENCFF967JPU 1609897503 ENCODE Processing Pipeline f85e093b27b4be9f28063e7179b99c16 https://www.encodeproject.org/files/ENCFF939WAA/@@download/ENCFF939WAA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF017UXT bigWig fold change over control ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF967JPU 1141194135 ENCODE Processing Pipeline a9167b408a513e198ac27956cbfbb4fc https://www.encodeproject.org/files/ENCFF017UXT/@@download/ENCFF017UXT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF226QUV bigWig fold change over control ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF814VHW 989758837 ENCODE Processing Pipeline 10755d6c537efe61e1591c8c0ce20156 https://www.encodeproject.org/files/ENCFF226QUV/@@download/ENCFF226QUV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF637PDW bigWig fold change over control ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF814VHW, ENCFF967JPU 1672774095 ENCODE Processing Pipeline 44aa34bbe9021085cc7428abb7586492 https://www.encodeproject.org/files/ENCFF637PDW/@@download/ENCFF637PDW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF324KBG bed narrowPeak replicated peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF566LBV, ENCFF599DWU, ENCFF670JYX 1259945 ENCODE Processing Pipeline a18ed93cc471ddb943040317f0c514d5 https://www.encodeproject.org/files/ENCFF324KBG/@@download/ENCFF324KBG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF364JYX bigBed narrowPeak replicated peaks ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF324KBG 2601896 ENCODE Processing Pipeline 0eef123ac6eb1042b5a04a0557873094 https://www.encodeproject.org/files/ENCFF364JYX/@@download/ENCFF364JYX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF910GMF fastq reads ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2209530856 Bing Ren, UCSD 7924dbdc2ef25b64ad9da56e7b31d2d4 SRA:SRR3652160 https://www.encodeproject.org/files/ENCFF910GMF/@@download/ENCFF910GMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF667IFV fastq reads ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 1576663925 Bing Ren, UCSD 71e6243077e63ab07ba14249cc0a23bb SRA:SRR3652159 https://www.encodeproject.org/files/ENCFF667IFV/@@download/ENCFF667IFV.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF348KVQ bam alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF910GMF 1716577923 ENCODE Processing Pipeline 70d3b8edfbc7b281900bdc8d5cf22f8a https://www.encodeproject.org/files/ENCFF348KVQ/@@download/ENCFF348KVQ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF066TXI bam alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF667IFV, ENCFF806TVZ 1275239454 ENCODE Processing Pipeline f65878cb4f4704b295867d1ff5d29d4d https://www.encodeproject.org/files/ENCFF066TXI/@@download/ENCFF066TXI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF025LBO bed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF348KVQ 1087324 ENCODE Processing Pipeline 24a8acdbe9f315d784cd3dbeb16eb62c https://www.encodeproject.org/files/ENCFF025LBO/@@download/ENCFF025LBO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF182CUX bed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF066TXI, ENCFF269MZC 1498625 ENCODE Processing Pipeline 8841b3c9fb04dad209e354d40319b0f5 https://www.encodeproject.org/files/ENCFF182CUX/@@download/ENCFF182CUX.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF178HLZ bed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF066TXI, ENCFF170XAR, ENCFF269MZC, ENCFF348KVQ 1784350 ENCODE Processing Pipeline 0f12a61a2e0572ccb2c2623ada0bbc1d https://www.encodeproject.org/files/ENCFF178HLZ/@@download/ENCFF178HLZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF723UIS bigBed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF182CUX 3403463 ENCODE Processing Pipeline f3e847c090d09feda21fbf7d781af636 https://www.encodeproject.org/files/ENCFF723UIS/@@download/ENCFF723UIS.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF254MZE bigWig signal p-value ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF348KVQ 454027515 ENCODE Processing Pipeline 3ed323806b831091f62b5d1be3da1ef2 https://www.encodeproject.org/files/ENCFF254MZE/@@download/ENCFF254MZE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF109FOT bigBed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF178HLZ 3884204 ENCODE Processing Pipeline d11b970f4874b95522ed09e9383339b6 https://www.encodeproject.org/files/ENCFF109FOT/@@download/ENCFF109FOT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF861SVF bigBed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF025LBO 2585183 ENCODE Processing Pipeline 35c19979eb5d48fe632635f37804c7b7 https://www.encodeproject.org/files/ENCFF861SVF/@@download/ENCFF861SVF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF819AYR bigWig signal p-value ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF066TXI, ENCFF269MZC 462527975 ENCODE Processing Pipeline 2b0340cda8aaba20509fb79e62681bcd https://www.encodeproject.org/files/ENCFF819AYR/@@download/ENCFF819AYR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF192JPG bigWig fold change over control ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF066TXI, ENCFF269MZC 461532591 ENCODE Processing Pipeline e6712518e02f62ab7df914fda5e97888 https://www.encodeproject.org/files/ENCFF192JPG/@@download/ENCFF192JPG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF996LHF bigWig signal p-value ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF066TXI, ENCFF170XAR, ENCFF269MZC, ENCFF348KVQ 1009889318 ENCODE Processing Pipeline b63f7d5a11f7fc9ea22d62133e705272 https://www.encodeproject.org/files/ENCFF996LHF/@@download/ENCFF996LHF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF758ZXT bigWig fold change over control ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF348KVQ 571491476 ENCODE Processing Pipeline a8fd57a87aa1cff29bbfce2d13c73fbd https://www.encodeproject.org/files/ENCFF758ZXT/@@download/ENCFF758ZXT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF767JFJ bigWig fold change over control ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF066TXI, ENCFF170XAR, ENCFF269MZC, ENCFF348KVQ 1008250360 ENCODE Processing Pipeline aba27ab6a2301fd16fc31e90d92b6b91 https://www.encodeproject.org/files/ENCFF767JFJ/@@download/ENCFF767JFJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF872AFX bigBed narrowPeak replicated peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF020FIY 2213125 ENCODE Processing Pipeline e8d5b6654cfce2a53400c16bacea3861 https://www.encodeproject.org/files/ENCFF872AFX/@@download/ENCFF872AFX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF020FIY bed narrowPeak replicated peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF025LBO, ENCFF178HLZ, ENCFF182CUX 901187 ENCODE Processing Pipeline a4adc55ba485f1c5717ab3dcf13c4cce https://www.encodeproject.org/files/ENCFF020FIY/@@download/ENCFF020FIY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF981OMR bam unfiltered alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF667IFV 1865783720 ENCODE Processing Pipeline a33f666aaca740c43510466c7aaa961f https://www.encodeproject.org/files/ENCFF981OMR/@@download/ENCFF981OMR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF511HDH bam unfiltered alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF910GMF 2596777131 ENCODE Processing Pipeline b437da8567ee6d057512559b25ccae58 https://www.encodeproject.org/files/ENCFF511HDH/@@download/ENCFF511HDH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF167BKB bam alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF667IFV 1274962745 ENCODE Processing Pipeline 956ea5fabc7751103436475200f57942 https://www.encodeproject.org/files/ENCFF167BKB/@@download/ENCFF167BKB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF614VDU bam alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF910GMF 1716230730 ENCODE Processing Pipeline b1710812e52166bd8efdacbec38a837f https://www.encodeproject.org/files/ENCFF614VDU/@@download/ENCFF614VDU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF460MXC bed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF614VDU, ENCFF876QJH 1131593 ENCODE Processing Pipeline 0915c930b297cc185c159837f8b03e89 https://www.encodeproject.org/files/ENCFF460MXC/@@download/ENCFF460MXC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF069IQG bed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF167BKB, ENCFF200JPL 1436935 ENCODE Processing Pipeline 5f8caac593a51221d7159dd599592700 https://www.encodeproject.org/files/ENCFF069IQG/@@download/ENCFF069IQG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF248RZB bed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF167BKB, ENCFF200JPL, ENCFF614VDU, ENCFF876QJH 1830616 ENCODE Processing Pipeline a686c35f6093ca3884950145cdf72c46 https://www.encodeproject.org/files/ENCFF248RZB/@@download/ENCFF248RZB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF784MXX bigBed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF460MXC 2676536 ENCODE Processing Pipeline 0df5882646eb0705405eb7027ee8ad77 https://www.encodeproject.org/files/ENCFF784MXX/@@download/ENCFF784MXX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF424XFA bigBed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069IQG 3301396 ENCODE Processing Pipeline 1c87553e443b281252d32ce1a658dfec https://www.encodeproject.org/files/ENCFF424XFA/@@download/ENCFF424XFA.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF457IWJ bigBed narrowPeak peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF248RZB 3964968 ENCODE Processing Pipeline 0b9883b4607a4829ad8e425d14c95f75 https://www.encodeproject.org/files/ENCFF457IWJ/@@download/ENCFF457IWJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF408IMQ bigWig signal p-value ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF614VDU, ENCFF876QJH 619434189 ENCODE Processing Pipeline ce428b50ae192ef4abd5e78101cc34c1 https://www.encodeproject.org/files/ENCFF408IMQ/@@download/ENCFF408IMQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF074MAU bigWig signal p-value ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF167BKB, ENCFF200JPL 505537162 ENCODE Processing Pipeline d0566155249ca88849716f14355826f0 https://www.encodeproject.org/files/ENCFF074MAU/@@download/ENCFF074MAU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF065GPS bigWig signal p-value ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF167BKB, ENCFF200JPL, ENCFF614VDU, ENCFF876QJH 803063455 ENCODE Processing Pipeline f0f61e91f07597c82cf4b3a465947be5 https://www.encodeproject.org/files/ENCFF065GPS/@@download/ENCFF065GPS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF644LIU bigWig fold change over control ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF614VDU, ENCFF876QJH 616723468 ENCODE Processing Pipeline fedd798846edb0d84e85b9c0e677774a https://www.encodeproject.org/files/ENCFF644LIU/@@download/ENCFF644LIU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF329XMM bigWig fold change over control ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF167BKB, ENCFF200JPL 503061902 ENCODE Processing Pipeline 212cfc21fc092e4790e7db2f3c1e8953 https://www.encodeproject.org/files/ENCFF329XMM/@@download/ENCFF329XMM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF534ANR bigWig fold change over control ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF167BKB, ENCFF200JPL, ENCFF614VDU, ENCFF876QJH 1078623965 ENCODE Processing Pipeline 6e248cc3c2c9bcdc46cc1d698bd9d822 https://www.encodeproject.org/files/ENCFF534ANR/@@download/ENCFF534ANR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF032CBZ bed narrowPeak replicated peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069IQG, ENCFF248RZB, ENCFF460MXC 919364 ENCODE Processing Pipeline 1834b7f2dd9725b6bf6783fc92a383a3 https://www.encodeproject.org/files/ENCFF032CBZ/@@download/ENCFF032CBZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF027HUW bigBed narrowPeak replicated peaks ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF032CBZ 2247937 ENCODE Processing Pipeline 14d9ef7920a531aae8599c296879e3c5 https://www.encodeproject.org/files/ENCFF027HUW/@@download/ENCFF027HUW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002ANH fastq reads ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 932249944 Bing Ren, UCSD edb21d6c86b816421301bfddd6c999ab SRA:SRR3652696 https://www.encodeproject.org/files/ENCFF002ANH/@@download/ENCFF002ANH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQW/ released low read length, inconsistent control read length, low read depth ENCFF002ANJ fastq reads ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1022868226 Bing Ren, UCSD 3b37065100dab4fc2c71b70450fd3407 SRA:SRR3652695 https://www.encodeproject.org/files/ENCFF002ANJ/@@download/ENCFF002ANJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARB/ released low read length, inconsistent control read length, low read depth ENCFF794PAM bam alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANJ, ENCFF806TVZ 679566629 ENCODE Processing Pipeline c5b371c830a6d5d45c333be8f07ff078 https://www.encodeproject.org/files/ENCFF794PAM/@@download/ENCFF794PAM.bam mm10-minimal archived low read length, low read depth ENCFF200ITU bam alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANH, ENCFF806TVZ 625666475 ENCODE Processing Pipeline 20e32b515c58acc1e628e0a46a77d694 https://www.encodeproject.org/files/ENCFF200ITU/@@download/ENCFF200ITU.bam mm10-minimal archived low read length, low read depth ENCFF903FYT bed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF794PAM, ENCFF819FNM 570316 ENCODE Processing Pipeline 25d872359bc10cbbea0184802dedc87d https://www.encodeproject.org/files/ENCFF903FYT/@@download/ENCFF903FYT.bed.gz mm10-minimal archived low read length, low read depth ENCFF298ZWT bed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF200ITU, ENCFF261VSL, ENCFF819FNM 594503 ENCODE Processing Pipeline 38ab0a6192871c033ad24fb7504ca7bd https://www.encodeproject.org/files/ENCFF298ZWT/@@download/ENCFF298ZWT.bed.gz mm10-minimal archived low read length, low read depth ENCFF497NKH bed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF200ITU, ENCFF261VSL, ENCFF794PAM, ENCFF819FNM 614585 ENCODE Processing Pipeline 2c90f61e01215cb97a29c20f9c0c18fd https://www.encodeproject.org/files/ENCFF497NKH/@@download/ENCFF497NKH.bed.gz mm10-minimal archived low read length, low read depth ENCFF832VAA bigBed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF903FYT 1798740 ENCODE Processing Pipeline ef9b4a3949e5e96c7055062a423f25ee https://www.encodeproject.org/files/ENCFF832VAA/@@download/ENCFF832VAA.bigBed mm10-minimal archived low read length, low read depth ENCFF563YIK bigBed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF298ZWT 1865145 ENCODE Processing Pipeline 5467381beb2b1fd73ae28c9a4cba3ee9 https://www.encodeproject.org/files/ENCFF563YIK/@@download/ENCFF563YIK.bigBed mm10-minimal archived low read length, low read depth ENCFF647FNK bigBed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF497NKH 1880656 ENCODE Processing Pipeline 7f9f89d424185970ed48f9c2a55586cf https://www.encodeproject.org/files/ENCFF647FNK/@@download/ENCFF647FNK.bigBed mm10-minimal archived low read length, low read depth ENCFF303OHE bigWig signal p-value ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF794PAM, ENCFF819FNM 345617210 ENCODE Processing Pipeline b5d8441d2d404ad8fc0871ce77b326cf https://www.encodeproject.org/files/ENCFF303OHE/@@download/ENCFF303OHE.bigWig mm10-minimal archived low read length, low read depth ENCFF113UCB bigWig signal p-value ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF200ITU, ENCFF261VSL, ENCFF819FNM 365349203 ENCODE Processing Pipeline 7dc01ff2eaa800382a8ac9ad0d5a27f1 https://www.encodeproject.org/files/ENCFF113UCB/@@download/ENCFF113UCB.bigWig mm10-minimal archived low read length, low read depth ENCFF070YVC bigWig signal p-value ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF200ITU, ENCFF261VSL, ENCFF794PAM, ENCFF819FNM 468049525 ENCODE Processing Pipeline 3a6958e852b5429c7f6d515a0602b225 https://www.encodeproject.org/files/ENCFF070YVC/@@download/ENCFF070YVC.bigWig mm10-minimal archived low read length, low read depth ENCFF386RFB bigWig fold change over control ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF794PAM, ENCFF819FNM 343444883 ENCODE Processing Pipeline 8b1b0fadbdd483a0a84fcea0d9fe151e https://www.encodeproject.org/files/ENCFF386RFB/@@download/ENCFF386RFB.bigWig mm10-minimal archived low read length, low read depth ENCFF574IUR bigWig fold change over control ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF200ITU, ENCFF261VSL, ENCFF819FNM 320056438 ENCODE Processing Pipeline 675967ea6839e0136222208702146b2f https://www.encodeproject.org/files/ENCFF574IUR/@@download/ENCFF574IUR.bigWig mm10-minimal archived low read length, low read depth ENCFF470MCP bigWig fold change over control ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF200ITU, ENCFF261VSL, ENCFF794PAM, ENCFF819FNM 528333634 ENCODE Processing Pipeline 7478da115cdd7f6b788c0c61f5c0fbfd https://www.encodeproject.org/files/ENCFF470MCP/@@download/ENCFF470MCP.bigWig mm10-minimal archived low read length, low read depth ENCFF489LHA bed narrowPeak replicated peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF298ZWT, ENCFF497NKH, ENCFF903FYT 655596 ENCODE Processing Pipeline 13c67852dcbd4ccf9c1145b4a69c2c5b https://www.encodeproject.org/files/ENCFF489LHA/@@download/ENCFF489LHA.bed.gz mm10-minimal archived low read length, low read depth ENCFF996AJC bigBed narrowPeak replicated peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF489LHA 1570512 ENCODE Processing Pipeline 593962054095bf3e2aba51b559e1f7e9 https://www.encodeproject.org/files/ENCFF996AJC/@@download/ENCFF996AJC.bigBed mm10-minimal archived low read length, low read depth ENCFF196VWU bam unfiltered alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANJ, ENCFF018NEO 1044898487 ENCODE Processing Pipeline 2cd28d417713b33040a84ca1cbe85029 https://www.encodeproject.org/files/ENCFF196VWU/@@download/ENCFF196VWU.bam mm10 released low read length, low read depth ENCFF271SBZ bam unfiltered alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANH, ENCFF018NEO 955873119 ENCODE Processing Pipeline 69393200f8b0762d19a73ccec1dcfbb9 https://www.encodeproject.org/files/ENCFF271SBZ/@@download/ENCFF271SBZ.bam mm10 released low read length, low read depth ENCFF200PRE bam alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANJ, ENCFF018NEO 679447688 ENCODE Processing Pipeline 66ef1e3613943cc4d4d051909012f046 https://www.encodeproject.org/files/ENCFF200PRE/@@download/ENCFF200PRE.bam mm10 released low read length, low read depth ENCFF382BVJ bam alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANH, ENCFF018NEO 625556904 ENCODE Processing Pipeline c11a8a795fed2ea894888df5770b1e48 https://www.encodeproject.org/files/ENCFF382BVJ/@@download/ENCFF382BVJ.bam mm10 released low read length, low read depth ENCFF710GBI bed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF200PRE, ENCFF438SAE, ENCFF451QHB 574338 ENCODE Processing Pipeline ae9064ac99eadf5419bb1cf9f753710c https://www.encodeproject.org/files/ENCFF710GBI/@@download/ENCFF710GBI.bed.gz mm10 released low read length, low read depth ENCFF421ZIW bed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF382BVJ, ENCFF438SAE, ENCFF451QHB 594235 ENCODE Processing Pipeline 974d0a09d396f879d0d7d03e1bcb4c87 https://www.encodeproject.org/files/ENCFF421ZIW/@@download/ENCFF421ZIW.bed.gz mm10 released low read length, low read depth ENCFF426PVR bed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF200PRE, ENCFF382BVJ, ENCFF438SAE, ENCFF451QHB 618064 ENCODE Processing Pipeline 333305068f44152c2cb12a185b6ac9cb https://www.encodeproject.org/files/ENCFF426PVR/@@download/ENCFF426PVR.bed.gz mm10 released low read length, low read depth ENCFF790QAQ bigBed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF710GBI 1805292 ENCODE Processing Pipeline df2d15c771599d368cf300be436df0de https://www.encodeproject.org/files/ENCFF790QAQ/@@download/ENCFF790QAQ.bigBed mm10 released low read length, low read depth ENCFF733XKW bigBed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF421ZIW 1859677 ENCODE Processing Pipeline 9b6686487daa8c337f3d2288fa5aa134 https://www.encodeproject.org/files/ENCFF733XKW/@@download/ENCFF733XKW.bigBed mm10 released low read length, low read depth ENCFF672MTV bigBed narrowPeak peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF426PVR 1881456 ENCODE Processing Pipeline 286312a2c326aaad3af7bf5c0b54e946 https://www.encodeproject.org/files/ENCFF672MTV/@@download/ENCFF672MTV.bigBed mm10 released low read length, low read depth ENCFF198JBY bigWig signal p-value ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF200PRE, ENCFF438SAE, ENCFF451QHB 366926157 ENCODE Processing Pipeline be9652c9ee07f278d7624172bef186cc https://www.encodeproject.org/files/ENCFF198JBY/@@download/ENCFF198JBY.bigWig mm10 released low read length, low read depth ENCFF384THR bigWig signal p-value ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF382BVJ, ENCFF438SAE, ENCFF451QHB 396801541 ENCODE Processing Pipeline b71849c486d8db1cb1955bf74281dd87 https://www.encodeproject.org/files/ENCFF384THR/@@download/ENCFF384THR.bigWig mm10 released low read length, low read depth ENCFF587FZP bigWig signal p-value ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF200PRE, ENCFF382BVJ, ENCFF438SAE, ENCFF451QHB 469333471 ENCODE Processing Pipeline 56c74197edd0379df94f9a5514802a24 https://www.encodeproject.org/files/ENCFF587FZP/@@download/ENCFF587FZP.bigWig mm10 released low read length, low read depth ENCFF470HUO bigWig fold change over control ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF200PRE, ENCFF438SAE, ENCFF451QHB 352672623 ENCODE Processing Pipeline cc860cef1456158565e9512fcd77f9f9 https://www.encodeproject.org/files/ENCFF470HUO/@@download/ENCFF470HUO.bigWig mm10 released low read length, low read depth ENCFF682MZX bigWig fold change over control ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF382BVJ, ENCFF438SAE, ENCFF451QHB 321734221 ENCODE Processing Pipeline 6ae9898ca20462d3c3ed9a2682eef040 https://www.encodeproject.org/files/ENCFF682MZX/@@download/ENCFF682MZX.bigWig mm10 released low read length, low read depth ENCFF615IVU bigWig fold change over control ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF200PRE, ENCFF382BVJ, ENCFF438SAE, ENCFF451QHB 531612710 ENCODE Processing Pipeline ce956ff06ca2cf08f00f985b88c3885d https://www.encodeproject.org/files/ENCFF615IVU/@@download/ENCFF615IVU.bigWig mm10 released low read length, low read depth ENCFF258RQA bed narrowPeak replicated peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF421ZIW, ENCFF426PVR, ENCFF710GBI 657120 ENCODE Processing Pipeline 4bf761ed31fff0c7e6e0191ee113a28d https://www.encodeproject.org/files/ENCFF258RQA/@@download/ENCFF258RQA.bed.gz mm10 released low read length, low read depth ENCFF612SAB bigBed narrowPeak replicated peaks ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF258RQA 1565979 ENCODE Processing Pipeline f1e2ed3293182583f727457c43d43579 https://www.encodeproject.org/files/ENCFF612SAB/@@download/ENCFF612SAB.bigBed mm10 released low read length, low read depth ENCFF603OEF fastq reads ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2600128801 Bing Ren, UCSD 77158fa835bb1efbbebf2e4a28569e08 SRA:SRR3652989 https://www.encodeproject.org/files/ENCFF603OEF/@@download/ENCFF603OEF.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF468ETJ fastq reads ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2082355454 Bing Ren, UCSD b8590e533f5bdb16c55f0376bb37253d SRA:SRR3652988 https://www.encodeproject.org/files/ENCFF468ETJ/@@download/ENCFF468ETJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF181NTG bam alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF603OEF, ENCFF806TVZ 1629282954 ENCODE Processing Pipeline 3ede300b1dc832ef508f5231a81c1874 https://www.encodeproject.org/files/ENCFF181NTG/@@download/ENCFF181NTG.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF598ZFH bam alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF468ETJ, ENCFF806TVZ 1368664043 ENCODE Processing Pipeline df8289041ed423a9f7dac3d5a779b86d https://www.encodeproject.org/files/ENCFF598ZFH/@@download/ENCFF598ZFH.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF841VWL bed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF181NTG, ENCFF269MZC 993494 ENCODE Processing Pipeline 31d08eedf3ef3a6974975f5a32be541e https://www.encodeproject.org/files/ENCFF841VWL/@@download/ENCFF841VWL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF547RMX bed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF170XAR, ENCFF181NTG, ENCFF269MZC, ENCFF598ZFH 1067754 ENCODE Processing Pipeline 47bb0b9b459554dbd762a0583213e80c https://www.encodeproject.org/files/ENCFF547RMX/@@download/ENCFF547RMX.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF215VLP bigBed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF547RMX 3281160 ENCODE Processing Pipeline 2266a2b27f8182b7443313c38ad25e59 https://www.encodeproject.org/files/ENCFF215VLP/@@download/ENCFF215VLP.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF501EPF bed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF598ZFH 992337 ENCODE Processing Pipeline 5c6cd89ee4d335fcdf24ba7c9ce1623a https://www.encodeproject.org/files/ENCFF501EPF/@@download/ENCFF501EPF.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF732FUU bigBed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF501EPF 3074875 ENCODE Processing Pipeline b2b47e4ea0550a419277335855d4627a https://www.encodeproject.org/files/ENCFF732FUU/@@download/ENCFF732FUU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF450GLY bigBed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF841VWL 3084790 ENCODE Processing Pipeline 6c040f0a574a092e687fbe1d64797ce8 https://www.encodeproject.org/files/ENCFF450GLY/@@download/ENCFF450GLY.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF466GHB bigWig signal p-value ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF598ZFH 465273244 ENCODE Processing Pipeline 48dc83e54bdc7fdf347c6bccd140f8a2 https://www.encodeproject.org/files/ENCFF466GHB/@@download/ENCFF466GHB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF177ETJ bigWig signal p-value ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF181NTG, ENCFF269MZC 562138115 ENCODE Processing Pipeline 4b0c19f9a90bf3d63a1f5baaf57b5181 https://www.encodeproject.org/files/ENCFF177ETJ/@@download/ENCFF177ETJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF618LXV bigWig signal p-value ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF170XAR, ENCFF181NTG, ENCFF269MZC, ENCFF598ZFH 830259734 ENCODE Processing Pipeline 3b3d8dd9e09273f8da4e7d642d736a67 https://www.encodeproject.org/files/ENCFF618LXV/@@download/ENCFF618LXV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF181DTD bigWig fold change over control ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF598ZFH 418384827 ENCODE Processing Pipeline ea641fbc7e795535ff7acf8fa4df4e34 https://www.encodeproject.org/files/ENCFF181DTD/@@download/ENCFF181DTD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF770CLI bigWig fold change over control ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF181NTG, ENCFF269MZC 499211701 ENCODE Processing Pipeline 1547238ad6eb7ae05abf2cd8c52af387 https://www.encodeproject.org/files/ENCFF770CLI/@@download/ENCFF770CLI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF383KPG bigWig fold change over control ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF170XAR, ENCFF181NTG, ENCFF269MZC, ENCFF598ZFH 852376620 ENCODE Processing Pipeline 49cb304f1ace4b403d9cdec8dbacf53c https://www.encodeproject.org/files/ENCFF383KPG/@@download/ENCFF383KPG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF848JJB bed narrowPeak replicated peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF501EPF, ENCFF547RMX, ENCFF841VWL 1126503 ENCODE Processing Pipeline b266bb701eae2beaf555a55d6f724db8 https://www.encodeproject.org/files/ENCFF848JJB/@@download/ENCFF848JJB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF417CRM bigBed narrowPeak replicated peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF848JJB 2579612 ENCODE Processing Pipeline 63d73c4d4101b95fcc23acd570440fd9 https://www.encodeproject.org/files/ENCFF417CRM/@@download/ENCFF417CRM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF027NDQ bam unfiltered alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF603OEF 2797985922 ENCODE Processing Pipeline d8c5ec4710633793a1a31056f43ef2ba https://www.encodeproject.org/files/ENCFF027NDQ/@@download/ENCFF027NDQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF467ZQO bam unfiltered alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF468ETJ 2253019652 ENCODE Processing Pipeline 455ccae76e1b518aeba36d0f7aa700d9 https://www.encodeproject.org/files/ENCFF467ZQO/@@download/ENCFF467ZQO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF108JXL bam alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF603OEF 1629038502 ENCODE Processing Pipeline 4d7f9df0f33a3a18aee22f97363f2f9a https://www.encodeproject.org/files/ENCFF108JXL/@@download/ENCFF108JXL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF925KDL bam alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF468ETJ 1368486679 ENCODE Processing Pipeline 07f68934e15a6062618a04332cfebc2c https://www.encodeproject.org/files/ENCFF925KDL/@@download/ENCFF925KDL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF392RGM bed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF876QJH, ENCFF925KDL 1004288 ENCODE Processing Pipeline c9790b5cb885b57f6c2e76260854dbd0 https://www.encodeproject.org/files/ENCFF392RGM/@@download/ENCFF392RGM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF500JRI bed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF108JXL, ENCFF200JPL 995759 ENCODE Processing Pipeline 03a92f43f2c8e5a5f5218d9a257c6f5a https://www.encodeproject.org/files/ENCFF500JRI/@@download/ENCFF500JRI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF555QYG bed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF108JXL, ENCFF200JPL, ENCFF876QJH, ENCFF925KDL 1092914 ENCODE Processing Pipeline f16fbf07ca58176f71fab0f085cc7019 https://www.encodeproject.org/files/ENCFF555QYG/@@download/ENCFF555QYG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF786DEZ bigBed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF392RGM 3103031 ENCODE Processing Pipeline b9dbe80276166d32eca7c0790a6663d5 https://www.encodeproject.org/files/ENCFF786DEZ/@@download/ENCFF786DEZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF739TGC bigBed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF500JRI 3089624 ENCODE Processing Pipeline 1235638555b90a74eb8f59c09ae2a754 https://www.encodeproject.org/files/ENCFF739TGC/@@download/ENCFF739TGC.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF927JOK bigBed narrowPeak peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF555QYG 3333660 ENCODE Processing Pipeline c3ad5d77fff620b6f4a1d815daa8d845 https://www.encodeproject.org/files/ENCFF927JOK/@@download/ENCFF927JOK.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF799FWU bigWig signal p-value ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF876QJH, ENCFF925KDL 445173611 ENCODE Processing Pipeline 31f3d96027db11ed90c7cf35e97ab9eb https://www.encodeproject.org/files/ENCFF799FWU/@@download/ENCFF799FWU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF458BHF bigWig signal p-value ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF108JXL, ENCFF200JPL 523082549 ENCODE Processing Pipeline 45a097df3a36ff24acb6d15d413afe06 https://www.encodeproject.org/files/ENCFF458BHF/@@download/ENCFF458BHF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF266XUQ bigWig signal p-value ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF108JXL, ENCFF200JPL, ENCFF876QJH, ENCFF925KDL 786637241 ENCODE Processing Pipeline 058fe1a1a6592b99dbfc4ad14aab74c2 https://www.encodeproject.org/files/ENCFF266XUQ/@@download/ENCFF266XUQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF938JPF bigWig fold change over control ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF876QJH, ENCFF925KDL 482230675 ENCODE Processing Pipeline 1428e15acee9f26ba62419cfed686edc https://www.encodeproject.org/files/ENCFF938JPF/@@download/ENCFF938JPF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF569SXJ bigWig fold change over control ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF108JXL, ENCFF200JPL 541368351 ENCODE Processing Pipeline 877ea36c3e8846abb62372f9f05d414d https://www.encodeproject.org/files/ENCFF569SXJ/@@download/ENCFF569SXJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF084MIV bigWig fold change over control ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF108JXL, ENCFF200JPL, ENCFF876QJH, ENCFF925KDL 926649381 ENCODE Processing Pipeline 032781e16824ae891cae8b6dc74ee265 https://www.encodeproject.org/files/ENCFF084MIV/@@download/ENCFF084MIV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF933MQW bed narrowPeak replicated peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF392RGM, ENCFF500JRI, ENCFF555QYG 1145056 ENCODE Processing Pipeline 3a2532ce168f0d7259687e4c0d8a3e6e https://www.encodeproject.org/files/ENCFF933MQW/@@download/ENCFF933MQW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF272YIO bigBed narrowPeak replicated peaks ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF933MQW 2616755 ENCODE Processing Pipeline 3975198e7db63a413a9d891a079bc2ab https://www.encodeproject.org/files/ENCFF272YIO/@@download/ENCFF272YIO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF923GVJ bam alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF388QNU, ENCFF806TVZ 2836242397 ENCODE Processing Pipeline 94fad45262635c5489f6fb3dfe96b305 https://www.encodeproject.org/files/ENCFF923GVJ/@@download/ENCFF923GVJ.bam mm10-minimal archived inconsistent platforms ENCFF500HXC bam alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF106YCA, ENCFF806TVZ 2768616190 ENCODE Processing Pipeline 19e130f3b156797385a6fc184ccaf16d https://www.encodeproject.org/files/ENCFF500HXC/@@download/ENCFF500HXC.bam mm10-minimal archived inconsistent platforms ENCFF106YCA fastq reads ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3011793840 Bing Ren, UCSD 29f7e783c0efe00cb7b6b8914fdae989 SRA:SRR3652224 https://www.encodeproject.org/files/ENCFF106YCA/@@download/ENCFF106YCA.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released inconsistent platforms ENCFF388QNU fastq reads ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3075224670 Bing Ren, UCSD a6e633c90cdfb46c6d120d565af98942 SRA:SRR3652223 https://www.encodeproject.org/files/ENCFF388QNU/@@download/ENCFF388QNU.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released inconsistent platforms ENCFF942UTI bigBed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF510JAR 7548816 ENCODE Processing Pipeline f2ddb055defc27da94a61058cec81899 https://www.encodeproject.org/files/ENCFF942UTI/@@download/ENCFF942UTI.bigBed mm10-minimal archived inconsistent platforms ENCFF510JAR bed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF923GVJ 2798132 ENCODE Processing Pipeline 566021e1ffa7ea30e184667bde80295b https://www.encodeproject.org/files/ENCFF510JAR/@@download/ENCFF510JAR.bed.gz mm10-minimal archived inconsistent platforms ENCFF980ABC bed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF500HXC, ENCFF923GVJ 2575254 ENCODE Processing Pipeline 282da86420ba6aabc94f035ec8c806a9 https://www.encodeproject.org/files/ENCFF980ABC/@@download/ENCFF980ABC.bed.gz mm10-minimal archived inconsistent platforms ENCFF617CIT bed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF500HXC 3232196 ENCODE Processing Pipeline 8f72e7e355ac778f1db00f76b6942e4d https://www.encodeproject.org/files/ENCFF617CIT/@@download/ENCFF617CIT.bed.gz mm10-minimal archived inconsistent platforms ENCFF032TYP bigBed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF617CIT 8576823 ENCODE Processing Pipeline dec2d127f659aa6d5e9a51f44af22138 https://www.encodeproject.org/files/ENCFF032TYP/@@download/ENCFF032TYP.bigBed mm10-minimal archived inconsistent platforms ENCFF646DWJ bigBed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF980ABC 7002112 ENCODE Processing Pipeline 57953bb613360edf779c9b7fb4d07700 https://www.encodeproject.org/files/ENCFF646DWJ/@@download/ENCFF646DWJ.bigBed mm10-minimal archived inconsistent platforms ENCFF694IBZ bigWig signal p-value ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF923GVJ 942354652 ENCODE Processing Pipeline a1c37d6a04f86f6cb69b1424bc92063a https://www.encodeproject.org/files/ENCFF694IBZ/@@download/ENCFF694IBZ.bigWig mm10-minimal archived inconsistent platforms ENCFF167PQJ bigWig signal p-value ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF500HXC 1004846700 ENCODE Processing Pipeline addefe1082ea2dfcf20fb58ac1babf67 https://www.encodeproject.org/files/ENCFF167PQJ/@@download/ENCFF167PQJ.bigWig mm10-minimal archived inconsistent platforms ENCFF622YFY bigWig signal p-value ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF500HXC, ENCFF923GVJ 1153864013 ENCODE Processing Pipeline 4e15792ccf4c47398bc56f05ecf73471 https://www.encodeproject.org/files/ENCFF622YFY/@@download/ENCFF622YFY.bigWig mm10-minimal archived inconsistent platforms ENCFF690WRB bigWig fold change over control ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF923GVJ 1026361123 ENCODE Processing Pipeline 2cd408a570d5dfacffa50b2faced665a https://www.encodeproject.org/files/ENCFF690WRB/@@download/ENCFF690WRB.bigWig mm10-minimal archived inconsistent platforms ENCFF449SRY bigWig fold change over control ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF500HXC 1002072329 ENCODE Processing Pipeline a382de47163c6de9b91c9270f248d35c https://www.encodeproject.org/files/ENCFF449SRY/@@download/ENCFF449SRY.bigWig mm10-minimal archived inconsistent platforms ENCFF271IYE bigWig fold change over control ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF500HXC, ENCFF923GVJ 1516341490 ENCODE Processing Pipeline 33ea5e99b511e70c0f4b51ac6c9e5f82 https://www.encodeproject.org/files/ENCFF271IYE/@@download/ENCFF271IYE.bigWig mm10-minimal archived inconsistent platforms ENCFF785JHF bigBed narrowPeak replicated peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF958AAS 5964769 ENCODE Processing Pipeline 4d7c298220e2e8f19140ea075c1e7a73 https://www.encodeproject.org/files/ENCFF785JHF/@@download/ENCFF785JHF.bigBed mm10-minimal archived inconsistent platforms ENCFF958AAS bed narrowPeak replicated peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF510JAR, ENCFF617CIT, ENCFF980ABC 2778356 ENCODE Processing Pipeline d95f7730e7e8420a42d3429cb1647c4e https://www.encodeproject.org/files/ENCFF958AAS/@@download/ENCFF958AAS.bed.gz mm10-minimal archived inconsistent platforms ENCFF095WWH bam unfiltered alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF106YCA 3574561100 ENCODE Processing Pipeline 700adc2157abdfb37cb62bb9cebed25b https://www.encodeproject.org/files/ENCFF095WWH/@@download/ENCFF095WWH.bam mm10 released inconsistent platforms ENCFF530HYD bam unfiltered alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF388QNU 3673593909 ENCODE Processing Pipeline 02a56fad6889ad2864b738931b6414a1 https://www.encodeproject.org/files/ENCFF530HYD/@@download/ENCFF530HYD.bam mm10 released inconsistent platforms ENCFF043ECE bam alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF106YCA 2768116083 ENCODE Processing Pipeline c402e271369a4dd48d1c11ad64144da8 https://www.encodeproject.org/files/ENCFF043ECE/@@download/ENCFF043ECE.bam mm10 released inconsistent platforms ENCFF874VSN bam alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF388QNU 2835673796 ENCODE Processing Pipeline 4715e10f155a974808865abd5969690b https://www.encodeproject.org/files/ENCFF874VSN/@@download/ENCFF874VSN.bam mm10 released inconsistent platforms ENCFF962EUG bed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF837CRH, ENCFF874VSN, ENCFF956XFI 2857853 ENCODE Processing Pipeline ed89d316f5ac0a6da0f4e3907075de9a https://www.encodeproject.org/files/ENCFF962EUG/@@download/ENCFF962EUG.bed.gz mm10 released inconsistent platforms ENCFF773KKX bed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF043ECE, ENCFF837CRH 2944884 ENCODE Processing Pipeline 159a14b70f7003ab0947e990a3e22501 https://www.encodeproject.org/files/ENCFF773KKX/@@download/ENCFF773KKX.bed.gz mm10 released inconsistent platforms ENCFF822IZG bigBed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF962EUG 7748041 ENCODE Processing Pipeline 2c7f07efa85f3e9a5767c6841dca7c56 https://www.encodeproject.org/files/ENCFF822IZG/@@download/ENCFF822IZG.bigBed mm10 released inconsistent platforms ENCFF100YYJ bed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF043ECE, ENCFF837CRH, ENCFF874VSN, ENCFF956XFI 3346195 ENCODE Processing Pipeline cc127490e64d482be1ae9c69356ed5e7 https://www.encodeproject.org/files/ENCFF100YYJ/@@download/ENCFF100YYJ.bed.gz mm10 released inconsistent platforms ENCFF784DBF bigBed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF773KKX 7907638 ENCODE Processing Pipeline 49297a312959cba60eb02a6b17f0086d https://www.encodeproject.org/files/ENCFF784DBF/@@download/ENCFF784DBF.bigBed mm10 released inconsistent platforms ENCFF797RIB bigBed narrowPeak peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF100YYJ 9037634 ENCODE Processing Pipeline 32aebc4572ac0f8942e17d2f9e66526e https://www.encodeproject.org/files/ENCFF797RIB/@@download/ENCFF797RIB.bigBed mm10 released inconsistent platforms ENCFF948ASY bigWig signal p-value ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF837CRH, ENCFF874VSN, ENCFF956XFI 1040640911 ENCODE Processing Pipeline 6cf930c36b92e5a0635a0307ec49af94 https://www.encodeproject.org/files/ENCFF948ASY/@@download/ENCFF948ASY.bigWig mm10 released inconsistent platforms ENCFF286FFX bigWig signal p-value ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF043ECE, ENCFF837CRH 723964258 ENCODE Processing Pipeline 0efeac39d7d6fa1049136a9c3cf66b2e https://www.encodeproject.org/files/ENCFF286FFX/@@download/ENCFF286FFX.bigWig mm10 released inconsistent platforms ENCFF744FNN bigWig signal p-value ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF043ECE, ENCFF837CRH, ENCFF874VSN, ENCFF956XFI 1651388895 ENCODE Processing Pipeline 68a20d1f37f91530dc5bd3c1e20c503a https://www.encodeproject.org/files/ENCFF744FNN/@@download/ENCFF744FNN.bigWig mm10 released inconsistent platforms ENCFF883KLN bigWig fold change over control ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF837CRH, ENCFF874VSN, ENCFF956XFI 1193612608 ENCODE Processing Pipeline 170ce843ceee6c5272a5957819aea4fa https://www.encodeproject.org/files/ENCFF883KLN/@@download/ENCFF883KLN.bigWig mm10 released inconsistent platforms ENCFF508XTH bigWig fold change over control ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF043ECE, ENCFF837CRH 939056888 ENCODE Processing Pipeline c9abd24a06622164c6f8a8c31a8d5cc3 https://www.encodeproject.org/files/ENCFF508XTH/@@download/ENCFF508XTH.bigWig mm10 released inconsistent platforms ENCFF905MWT bigWig fold change over control ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF043ECE, ENCFF837CRH, ENCFF874VSN, ENCFF956XFI 1718806732 ENCODE Processing Pipeline d16d94d6f18481b42fcc6c28f7f932fd https://www.encodeproject.org/files/ENCFF905MWT/@@download/ENCFF905MWT.bigWig mm10 released inconsistent platforms ENCFF155VNQ bed narrowPeak replicated peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF100YYJ, ENCFF773KKX, ENCFF962EUG 2862017 ENCODE Processing Pipeline dcd0acadec3eed612b35b964515e987f https://www.encodeproject.org/files/ENCFF155VNQ/@@download/ENCFF155VNQ.bed.gz mm10 released inconsistent platforms ENCFF934IUC bigBed narrowPeak replicated peaks ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF155VNQ 5917118 ENCODE Processing Pipeline 72050d5058bddf1f4a3c9e8209d50a40 https://www.encodeproject.org/files/ENCFF934IUC/@@download/ENCFF934IUC.bigBed mm10 released inconsistent platforms ENCFF002ANF fastq reads ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 997097288 Bing Ren, UCSD b8e1b1027f9fdab794ca20f1af41f5fc SRA:SRR3651558 https://www.encodeproject.org/files/ENCFF002ANF/@@download/ENCFF002ANF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQV/ released low read length, inconsistent control read length, low read depth ENCFF002ANK fastq reads ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1116272697 Bing Ren, UCSD 46297c44f7e50e37e73c534870d1a72c SRA:SRR3651559 https://www.encodeproject.org/files/ENCFF002ANK/@@download/ENCFF002ANK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQZ/ released low read length, inconsistent control read length, low read depth ENCFF158VUI bam alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANF, ENCFF806TVZ 654330121 ENCODE Processing Pipeline 7a96af31f08de0a124e532a2e505595e https://www.encodeproject.org/files/ENCFF158VUI/@@download/ENCFF158VUI.bam mm10-minimal archived low read length, low read depth ENCFF523YHZ bam alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANK, ENCFF806TVZ 744567177 ENCODE Processing Pipeline b1cfa9ea5c68f263ed6ffc735d358942 https://www.encodeproject.org/files/ENCFF523YHZ/@@download/ENCFF523YHZ.bam mm10-minimal archived low read length, low read depth ENCFF044CEN bed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF158VUI, ENCFF967HVB 507809 ENCODE Processing Pipeline 76b95eb0ed812be99d15139bd01641d7 https://www.encodeproject.org/files/ENCFF044CEN/@@download/ENCFF044CEN.bed.gz mm10-minimal archived low read length, low read depth ENCFF495TOG bed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158VUI, ENCFF238GCZ, ENCFF523YHZ, ENCFF967HVB 575857 ENCODE Processing Pipeline 3106ca9d93acbf4877ab2b02bc9e2043 https://www.encodeproject.org/files/ENCFF495TOG/@@download/ENCFF495TOG.bed.gz mm10-minimal archived low read length, low read depth ENCFF650CSV bed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF523YHZ 503786 ENCODE Processing Pipeline 05754b402b4a433615e92620e2f3cce5 https://www.encodeproject.org/files/ENCFF650CSV/@@download/ENCFF650CSV.bed.gz mm10-minimal archived low read length, low read depth ENCFF805TXS bigBed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF495TOG 1869760 ENCODE Processing Pipeline 17f137d10db063ef53505141743ac5f5 https://www.encodeproject.org/files/ENCFF805TXS/@@download/ENCFF805TXS.bigBed mm10-minimal archived low read length, low read depth ENCFF264NOF bigBed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF650CSV 1700564 ENCODE Processing Pipeline 53ff70c5c6c573d9d0d9d8231d4e0747 https://www.encodeproject.org/files/ENCFF264NOF/@@download/ENCFF264NOF.bigBed mm10-minimal archived low read length, low read depth ENCFF748HJN bigBed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF044CEN 1710462 ENCODE Processing Pipeline a510ecf1b33bfb97e8a17b02d41ec59f https://www.encodeproject.org/files/ENCFF748HJN/@@download/ENCFF748HJN.bigBed mm10-minimal archived low read length, low read depth ENCFF951KRT bigWig signal p-value ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF523YHZ 305695438 ENCODE Processing Pipeline a8d5edcc7f705555939316cc1608c341 https://www.encodeproject.org/files/ENCFF951KRT/@@download/ENCFF951KRT.bigWig mm10-minimal archived low read length, low read depth ENCFF113ROJ bigWig signal p-value ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF158VUI, ENCFF967HVB 341889491 ENCODE Processing Pipeline 4740552505db7b98c7724cf749df39f6 https://www.encodeproject.org/files/ENCFF113ROJ/@@download/ENCFF113ROJ.bigWig mm10-minimal archived low read length, low read depth ENCFF505FLD bigWig signal p-value ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158VUI, ENCFF238GCZ, ENCFF523YHZ, ENCFF967HVB 656122713 ENCODE Processing Pipeline 3e133edb8550e969e7f8ffb5384344b2 https://www.encodeproject.org/files/ENCFF505FLD/@@download/ENCFF505FLD.bigWig mm10-minimal archived low read length, low read depth ENCFF971CGH bigWig fold change over control ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF238GCZ, ENCFF523YHZ 334284422 ENCODE Processing Pipeline f442fd6ab7f098d35b9ef9a518dda31d https://www.encodeproject.org/files/ENCFF971CGH/@@download/ENCFF971CGH.bigWig mm10-minimal archived low read length, low read depth ENCFF304JPQ bigWig fold change over control ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF158VUI, ENCFF967HVB 313659292 ENCODE Processing Pipeline dd690991ec39070dfb463091fbb8efb8 https://www.encodeproject.org/files/ENCFF304JPQ/@@download/ENCFF304JPQ.bigWig mm10-minimal archived low read length, low read depth ENCFF911YSZ bigWig fold change over control ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158VUI, ENCFF238GCZ, ENCFF523YHZ, ENCFF967HVB 647429518 ENCODE Processing Pipeline d4028da5aab32b44bc1b70bb737b406e https://www.encodeproject.org/files/ENCFF911YSZ/@@download/ENCFF911YSZ.bigWig mm10-minimal archived low read length, low read depth ENCFF967WGS bigBed narrowPeak replicated peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF688BGU 1502300 ENCODE Processing Pipeline 8e9dedfc79cf1b3d2ece56034e2cf91f https://www.encodeproject.org/files/ENCFF967WGS/@@download/ENCFF967WGS.bigBed mm10-minimal archived low read length, low read depth ENCFF688BGU bed narrowPeak replicated peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF044CEN, ENCFF495TOG, ENCFF650CSV 593240 ENCODE Processing Pipeline e98e3fca1b136cc6a094ef2c4448b6bf https://www.encodeproject.org/files/ENCFF688BGU/@@download/ENCFF688BGU.bed.gz mm10-minimal archived low read length, low read depth ENCFF669HES bam unfiltered alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANK, ENCFF018NEO 1161148334 ENCODE Processing Pipeline 38ec68b4ef8e18bfb195289b9ff5e4c1 https://www.encodeproject.org/files/ENCFF669HES/@@download/ENCFF669HES.bam mm10 released low read length, low read depth ENCFF256TOZ bam unfiltered alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANF, ENCFF018NEO 1027770264 ENCODE Processing Pipeline 48febdc9ee18a1bdbe3ba4e44b81d027 https://www.encodeproject.org/files/ENCFF256TOZ/@@download/ENCFF256TOZ.bam mm10 released low read length, low read depth ENCFF475ZGG bam alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANF, ENCFF018NEO 654164122 ENCODE Processing Pipeline e1ec187775676a141c1b390bfd449e28 https://www.encodeproject.org/files/ENCFF475ZGG/@@download/ENCFF475ZGG.bam mm10 released low read length, low read depth ENCFF781PWF bam alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANK, ENCFF018NEO 744331899 ENCODE Processing Pipeline 2f2a15cb9d796be0bdbd37a29c325d03 https://www.encodeproject.org/files/ENCFF781PWF/@@download/ENCFF781PWF.bam mm10 released low read length, low read depth ENCFF407WBS bed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF781PWF 511382 ENCODE Processing Pipeline 9f8675bba0fd29f62bad558c8cff8545 https://www.encodeproject.org/files/ENCFF407WBS/@@download/ENCFF407WBS.bed.gz mm10 released low read length, low read depth ENCFF057WBZ bed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF475ZGG, ENCFF858PPY 508875 ENCODE Processing Pipeline d2b13a31177fa3397ecd97a72b3eae21 https://www.encodeproject.org/files/ENCFF057WBZ/@@download/ENCFF057WBZ.bed.gz mm10 released low read length, low read depth ENCFF803NHO bed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF475ZGG, ENCFF507BQX, ENCFF781PWF, ENCFF858PPY 570416 ENCODE Processing Pipeline 4691b31efa3faaff89e7f73fb57b5619 https://www.encodeproject.org/files/ENCFF803NHO/@@download/ENCFF803NHO.bed.gz mm10 released low read length, low read depth ENCFF854DEF bigBed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF407WBS 1732345 ENCODE Processing Pipeline 6794368fcda0426a9322636b32165bbe https://www.encodeproject.org/files/ENCFF854DEF/@@download/ENCFF854DEF.bigBed mm10 released low read length, low read depth ENCFF138IBG bigBed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF803NHO 1844156 ENCODE Processing Pipeline 036714a2e1790709d4fd525e02c54ed3 https://www.encodeproject.org/files/ENCFF138IBG/@@download/ENCFF138IBG.bigBed mm10 released low read length, low read depth ENCFF778RWA bigBed narrowPeak peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF057WBZ 1710884 ENCODE Processing Pipeline 6c8ad2af6dba84fe725bb50b86e8a93e https://www.encodeproject.org/files/ENCFF778RWA/@@download/ENCFF778RWA.bigBed mm10 released low read length, low read depth ENCFF006XXD bigWig signal p-value ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF781PWF 352652679 ENCODE Processing Pipeline 7bdb4b4b4c1783bb7840afac0be0e5de https://www.encodeproject.org/files/ENCFF006XXD/@@download/ENCFF006XXD.bigWig mm10 released low read length, low read depth ENCFF914NMZ bigWig signal p-value ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF475ZGG, ENCFF858PPY 378028270 ENCODE Processing Pipeline 717f9bfc6c61cc2712930ec6269973a3 https://www.encodeproject.org/files/ENCFF914NMZ/@@download/ENCFF914NMZ.bigWig mm10 released low read length, low read depth ENCFF975QYH bigWig signal p-value ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF475ZGG, ENCFF507BQX, ENCFF781PWF, ENCFF858PPY 707181977 ENCODE Processing Pipeline 432f45e5b659ce3953555982617078fa https://www.encodeproject.org/files/ENCFF975QYH/@@download/ENCFF975QYH.bigWig mm10 released low read length, low read depth ENCFF557NDJ bigBed narrowPeak replicated peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF719SDJ 1513209 ENCODE Processing Pipeline 0a1ed81bf36c0b866ec8dfe5a0691a8c https://www.encodeproject.org/files/ENCFF557NDJ/@@download/ENCFF557NDJ.bigBed mm10 released low read length, low read depth ENCFF115TVW bigWig fold change over control ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF475ZGG, ENCFF507BQX, ENCFF781PWF, ENCFF858PPY 660483108 ENCODE Processing Pipeline 75f3047ae14adf8abc13bdcd50f3d4f2 https://www.encodeproject.org/files/ENCFF115TVW/@@download/ENCFF115TVW.bigWig mm10 released low read length, low read depth ENCFF719SDJ bed narrowPeak replicated peaks ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF057WBZ, ENCFF407WBS, ENCFF803NHO 608465 ENCODE Processing Pipeline d07f487ebfab29c26664e39de4075d33 https://www.encodeproject.org/files/ENCFF719SDJ/@@download/ENCFF719SDJ.bed.gz mm10 released low read length, low read depth ENCFF190VNF bigWig fold change over control ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF507BQX, ENCFF781PWF 366603265 ENCODE Processing Pipeline 2489f29a1840a27effc0224c58fbe346 https://www.encodeproject.org/files/ENCFF190VNF/@@download/ENCFF190VNF.bigWig mm10 released low read length, low read depth ENCFF087AJE bigWig fold change over control ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF475ZGG, ENCFF858PPY 306500420 ENCODE Processing Pipeline 33726beb2b72c0089b83b31642a1d9b7 https://www.encodeproject.org/files/ENCFF087AJE/@@download/ENCFF087AJE.bigWig mm10 released low read length, low read depth ENCFF935FDP bam alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF093IVT, ENCFF806TVZ, ENCFF900XIV 2965646419 ENCODE Processing Pipeline 36fe90332d60ea265e2cea6e8471c2b6 https://www.encodeproject.org/files/ENCFF935FDP/@@download/ENCFF935FDP.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF319TLJ bam alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF031TNV, ENCFF406FUF, ENCFF806TVZ 2866955770 ENCODE Processing Pipeline ce3f45e86fc9337ab39c179933786859 https://www.encodeproject.org/files/ENCFF319TLJ/@@download/ENCFF319TLJ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF031TNV fastq reads ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 472361882 Bing Ren, UCSD 7e013fcb257bcdd338d9bc45bd671c7b SRA:SRR3652939 https://www.encodeproject.org/files/ENCFF031TNV/@@download/ENCFF031TNV.fastq.gz Illumina HiSeq 2500 /files/ENCFF037ZOC/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF093IVT fastq reads ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2867374000 Bing Ren, UCSD 5ad24220b235a9263eae9c9df476e4fc SRA:SRR3652937 https://www.encodeproject.org/files/ENCFF093IVT/@@download/ENCFF093IVT.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF900XIV fastq reads ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 842494557 Bing Ren, UCSD d404e4356c1e31b2f1fd353475ca6b63 SRA:SRR3652938 https://www.encodeproject.org/files/ENCFF900XIV/@@download/ENCFF900XIV.fastq.gz Illumina HiSeq 2500 /files/ENCFF580JZM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF406FUF fastq reads ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2897030115 Bing Ren, UCSD 611f4464ef6dbfb3c03fd992fef58307 SRA:SRR3652940 https://www.encodeproject.org/files/ENCFF406FUF/@@download/ENCFF406FUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF540CFJ bed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF935FDP 1937422 ENCODE Processing Pipeline 1bfb94193b025b378b7f685a3070d4f4 https://www.encodeproject.org/files/ENCFF540CFJ/@@download/ENCFF540CFJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF981OEY bed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF319TLJ, ENCFF366PSQ 1472914 ENCODE Processing Pipeline a3a0c143edd6ddf3ec3a5110adad94dc https://www.encodeproject.org/files/ENCFF981OEY/@@download/ENCFF981OEY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF155GJT bigBed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF981OEY 3079240 ENCODE Processing Pipeline 914c520d2a2473c04f005a8658f237c3 https://www.encodeproject.org/files/ENCFF155GJT/@@download/ENCFF155GJT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF964QKL bed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF319TLJ, ENCFF366PSQ, ENCFF935FDP 1249868 ENCODE Processing Pipeline d513a0e0da777683ecc60129f177938f https://www.encodeproject.org/files/ENCFF964QKL/@@download/ENCFF964QKL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF478FOF bigBed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF540CFJ 3912635 ENCODE Processing Pipeline 027b5e8697f39941c0898f30500c13f8 https://www.encodeproject.org/files/ENCFF478FOF/@@download/ENCFF478FOF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF354UPY bigWig signal p-value ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF319TLJ, ENCFF366PSQ 915978658 ENCODE Processing Pipeline e172ae446cabdf573792641bab265922 https://www.encodeproject.org/files/ENCFF354UPY/@@download/ENCFF354UPY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF584YVZ bigBed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF964QKL 3149566 ENCODE Processing Pipeline 240cf2304844f4a59fb7c6c0f931539a https://www.encodeproject.org/files/ENCFF584YVZ/@@download/ENCFF584YVZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF225OIQ bigWig signal p-value ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF935FDP 1148254342 ENCODE Processing Pipeline fecb37d072b40358069469e0ab65525c https://www.encodeproject.org/files/ENCFF225OIQ/@@download/ENCFF225OIQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF574VCX bigWig signal p-value ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF319TLJ, ENCFF366PSQ, ENCFF935FDP 1173155511 ENCODE Processing Pipeline 17ef064a45598a166be8def939ecd344 https://www.encodeproject.org/files/ENCFF574VCX/@@download/ENCFF574VCX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF754UWP bigWig fold change over control ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF319TLJ, ENCFF366PSQ 1023999575 ENCODE Processing Pipeline f6fff8af293b17c9b286f09968e62d4e https://www.encodeproject.org/files/ENCFF754UWP/@@download/ENCFF754UWP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF978POA bigWig fold change over control ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF366PSQ, ENCFF935FDP 1088526654 ENCODE Processing Pipeline 55c78358f5a14f5e7d774bdd015e01e2 https://www.encodeproject.org/files/ENCFF978POA/@@download/ENCFF978POA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF095JAY bed narrowPeak replicated peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF540CFJ, ENCFF964QKL, ENCFF981OEY 1072919 ENCODE Processing Pipeline 63e7afbe7531da222c22de8af737274a https://www.encodeproject.org/files/ENCFF095JAY/@@download/ENCFF095JAY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF742GGM bigWig fold change over control ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF319TLJ, ENCFF366PSQ, ENCFF935FDP 1563991546 ENCODE Processing Pipeline 9e3e9b2934d74691646df21415d259e8 https://www.encodeproject.org/files/ENCFF742GGM/@@download/ENCFF742GGM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF599FTO bigBed narrowPeak replicated peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF095JAY 2277975 ENCODE Processing Pipeline 5f138e5a382efd7e09ea8d40bcfb64e6 https://www.encodeproject.org/files/ENCFF599FTO/@@download/ENCFF599FTO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF424GCT bam unfiltered alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF093IVT, ENCFF900XIV 4380257550 ENCODE Processing Pipeline f8b45553eabafa66f46aa880c1dd8f23 https://www.encodeproject.org/files/ENCFF424GCT/@@download/ENCFF424GCT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF863ZTX bam unfiltered alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF031TNV, ENCFF406FUF 4022827851 ENCODE Processing Pipeline e47fe84508db1e6e25bc268e5619c21a https://www.encodeproject.org/files/ENCFF863ZTX/@@download/ENCFF863ZTX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF683RHK bam alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF031TNV, ENCFF406FUF 2866379936 ENCODE Processing Pipeline 336a137b1677f7f7b7079e18f0f67d90 https://www.encodeproject.org/files/ENCFF683RHK/@@download/ENCFF683RHK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF367TEX bam alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF093IVT, ENCFF900XIV 2965075780 ENCODE Processing Pipeline 614ea2d5e95a87f902f6f073064df9d8 https://www.encodeproject.org/files/ENCFF367TEX/@@download/ENCFF367TEX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF834JEK bed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF683RHK, ENCFF837CRH, ENCFF956XFI 1586107 ENCODE Processing Pipeline 2edbac29de2dfc16978629b09e220a93 https://www.encodeproject.org/files/ENCFF834JEK/@@download/ENCFF834JEK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF865IGV bed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF367TEX, ENCFF837CRH 1232583 ENCODE Processing Pipeline 0385969f434ff7841fe770840129e8fe https://www.encodeproject.org/files/ENCFF865IGV/@@download/ENCFF865IGV.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF574QZX bed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF367TEX, ENCFF683RHK, ENCFF837CRH, ENCFF956XFI 2035625 ENCODE Processing Pipeline 8fdde012f31bace8ccb29f672a40d8ae https://www.encodeproject.org/files/ENCFF574QZX/@@download/ENCFF574QZX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF925VFZ bigBed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF865IGV 2516488 ENCODE Processing Pipeline 603d6f80cf05ee89e9f464ad8851b2f4 https://www.encodeproject.org/files/ENCFF925VFZ/@@download/ENCFF925VFZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF045VQS bigBed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF834JEK 3345808 ENCODE Processing Pipeline cf5fea7c2e7f478523007dd3402f251f https://www.encodeproject.org/files/ENCFF045VQS/@@download/ENCFF045VQS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF743VNV bigBed narrowPeak peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF574QZX 5206458 ENCODE Processing Pipeline fa4c77d63b559ece761e4a65479ae833 https://www.encodeproject.org/files/ENCFF743VNV/@@download/ENCFF743VNV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF072YJU bigWig signal p-value ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF683RHK, ENCFF837CRH, ENCFF956XFI 1035044396 ENCODE Processing Pipeline 125accfd50ad0179f452f4d50ee1eb5d https://www.encodeproject.org/files/ENCFF072YJU/@@download/ENCFF072YJU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF045GYP bigWig signal p-value ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF367TEX, ENCFF837CRH 1013449144 ENCODE Processing Pipeline 7903804bc4bbe64f022f8407739beee8 https://www.encodeproject.org/files/ENCFF045GYP/@@download/ENCFF045GYP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF090CAV bigWig signal p-value ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF367TEX, ENCFF683RHK, ENCFF837CRH, ENCFF956XFI 1751194081 ENCODE Processing Pipeline ddef223d82f17688af6a2a6e096bd4e0 https://www.encodeproject.org/files/ENCFF090CAV/@@download/ENCFF090CAV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF950IQR bigWig fold change over control ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF683RHK, ENCFF837CRH, ENCFF956XFI 1255515289 ENCODE Processing Pipeline 41fd778fd992fcf3e638efdb32901903 https://www.encodeproject.org/files/ENCFF950IQR/@@download/ENCFF950IQR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF433VWX bigWig fold change over control ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF367TEX, ENCFF837CRH 1015889355 ENCODE Processing Pipeline 85dbae2d26cb0e18dfce4ef7beda6ba2 https://www.encodeproject.org/files/ENCFF433VWX/@@download/ENCFF433VWX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF760VJL bigWig fold change over control ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF367TEX, ENCFF683RHK, ENCFF837CRH, ENCFF956XFI 1765408467 ENCODE Processing Pipeline efc40eb333936c6776d3acba4108776b https://www.encodeproject.org/files/ENCFF760VJL/@@download/ENCFF760VJL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF076ZNJ bed narrowPeak replicated peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF574QZX, ENCFF834JEK, ENCFF865IGV 1059311 ENCODE Processing Pipeline b07b74ddead7fe6e1475b9f199d2ae95 https://www.encodeproject.org/files/ENCFF076ZNJ/@@download/ENCFF076ZNJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF105KKV bigBed narrowPeak replicated peaks ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF076ZNJ 2180164 ENCODE Processing Pipeline d7467c2cc5b482e1baf33503faa07e0d https://www.encodeproject.org/files/ENCFF105KKV/@@download/ENCFF105KKV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF002DSY fastq reads ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 423953097 Bing Ren, UCSD 741f3054ea1a59eaed56814f3987efa8 SRA:SRR3651641 https://www.encodeproject.org/files/ENCFF002DSY/@@download/ENCFF002DSY.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARC/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DTK fastq reads ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 50 single-ended 2524155740 Bing Ren, UCSD d04185bcc24805b0a4e33d0a4d93e34e SRA:SRR3651642 https://www.encodeproject.org/files/ENCFF002DTK/@@download/ENCFF002DTK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARC/ released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DTL fastq reads ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 2804960422 Bing Ren, UCSD 45036735a6b1ae0b2dc151122db26a4f SRA:SRR3651640 https://www.encodeproject.org/files/ENCFF002DTL/@@download/ENCFF002DTL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARH/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF879EQZ bam alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002DSY, ENCFF002DTK, ENCFF806TVZ 1495738162 ENCODE Processing Pipeline 533555076075781cb3af2ae7afc87b98 https://www.encodeproject.org/files/ENCFF879EQZ/@@download/ENCFF879EQZ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF054BXG bam alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002DTL, ENCFF806TVZ 1836634714 ENCODE Processing Pipeline 0070658fbd644cda6d6ac5aee267a27b https://www.encodeproject.org/files/ENCFF054BXG/@@download/ENCFF054BXG.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF783HZX bed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF054BXG, ENCFF156ZPL, ENCFF989KGL 260826 ENCODE Processing Pipeline 54be795bfa034c83ebbad1c6d4a3bf3c https://www.encodeproject.org/files/ENCFF783HZX/@@download/ENCFF783HZX.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF118FRY bed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF054BXG, ENCFF156ZPL, ENCFF879EQZ, ENCFF989KGL 180292 ENCODE Processing Pipeline fd13502c0cff5d7b64e627862e2164f6 https://www.encodeproject.org/files/ENCFF118FRY/@@download/ENCFF118FRY.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF079VQZ bed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF156ZPL, ENCFF879EQZ, ENCFF989KGL 583578 ENCODE Processing Pipeline 9085deff2d829eb47f7f27c8077cc4ad https://www.encodeproject.org/files/ENCFF079VQZ/@@download/ENCFF079VQZ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF699TKI bigBed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF783HZX 597050 ENCODE Processing Pipeline 5b0694e815e1cafd964e7588529c2f6a https://www.encodeproject.org/files/ENCFF699TKI/@@download/ENCFF699TKI.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF036UHT bigBed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF079VQZ 1091581 ENCODE Processing Pipeline 9bd2f70937322f335d18458091d168f6 https://www.encodeproject.org/files/ENCFF036UHT/@@download/ENCFF036UHT.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF528QRD bigBed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF118FRY 427536 ENCODE Processing Pipeline ae8a5a2f168ed258d06be09ce4c6d079 https://www.encodeproject.org/files/ENCFF528QRD/@@download/ENCFF528QRD.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF530THJ bigWig signal p-value ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF156ZPL, ENCFF879EQZ, ENCFF989KGL 621706676 ENCODE Processing Pipeline a05f4c5aa7598d2fa647cb6ad2c7ac69 https://www.encodeproject.org/files/ENCFF530THJ/@@download/ENCFF530THJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF350FZC bigWig signal p-value ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF054BXG, ENCFF156ZPL, ENCFF989KGL 665885223 ENCODE Processing Pipeline 1d28c902da91ad51633033ecb4798726 https://www.encodeproject.org/files/ENCFF350FZC/@@download/ENCFF350FZC.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF608ZLL bigWig signal p-value ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF054BXG, ENCFF156ZPL, ENCFF879EQZ, ENCFF989KGL 889093609 ENCODE Processing Pipeline 6d6c79955f36695589c68db69c914bb0 https://www.encodeproject.org/files/ENCFF608ZLL/@@download/ENCFF608ZLL.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF270DKK bigWig fold change over control ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF156ZPL, ENCFF879EQZ, ENCFF989KGL 621171102 ENCODE Processing Pipeline f0789cfb8d6b9cf3179696e4ebf6813f https://www.encodeproject.org/files/ENCFF270DKK/@@download/ENCFF270DKK.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF809MNN bigWig fold change over control ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF054BXG, ENCFF156ZPL, ENCFF989KGL 750262831 ENCODE Processing Pipeline 19d03155560839f811cb33660e41bcb8 https://www.encodeproject.org/files/ENCFF809MNN/@@download/ENCFF809MNN.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF810LHK bigWig fold change over control ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF054BXG, ENCFF156ZPL, ENCFF879EQZ, ENCFF989KGL 1079293414 ENCODE Processing Pipeline 19e3105d481d58dd2f1638ba01916e7c https://www.encodeproject.org/files/ENCFF810LHK/@@download/ENCFF810LHK.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF304OIQ bigBed narrowPeak replicated peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF722KTE 232549 ENCODE Processing Pipeline 61f4955d3db599f6725c96e263565081 https://www.encodeproject.org/files/ENCFF304OIQ/@@download/ENCFF304OIQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF722KTE bed narrowPeak replicated peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF079VQZ, ENCFF118FRY, ENCFF783HZX 82620 ENCODE Processing Pipeline b497c9f936076f6a3397559c6c2a15d2 https://www.encodeproject.org/files/ENCFF722KTE/@@download/ENCFF722KTE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF399VMJ bam unfiltered alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DTL, ENCFF018NEO 3575269979 ENCODE Processing Pipeline 966d2207cf02d434e5b324f19a405664 https://www.encodeproject.org/files/ENCFF399VMJ/@@download/ENCFF399VMJ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF109VRA bam unfiltered alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSY, ENCFF002DTK, ENCFF018NEO 2481804779 ENCODE Processing Pipeline 8655ce9bfcfa9133277f33fa557e9d25 https://www.encodeproject.org/files/ENCFF109VRA/@@download/ENCFF109VRA.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF389WXF bam alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSY, ENCFF002DTK, ENCFF018NEO 1165477607 ENCODE Processing Pipeline 512b9dce6de48f3dc957cf37a8649c3a https://www.encodeproject.org/files/ENCFF389WXF/@@download/ENCFF389WXF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF272ODL bam alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DTL, ENCFF018NEO 1835977176 ENCODE Processing Pipeline c5251970e40ed0ece96fb120354803bb https://www.encodeproject.org/files/ENCFF272ODL/@@download/ENCFF272ODL.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF344HKM bed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF272ODL, ENCFF782YCY, ENCFF922FWV 244198 ENCODE Processing Pipeline 4e2a42868c644e5a91130a978b2796a3 https://www.encodeproject.org/files/ENCFF344HKM/@@download/ENCFF344HKM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF870KGA bed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF389WXF, ENCFF782YCY, ENCFF922FWV 522964 ENCODE Processing Pipeline d2e64b795857e6be275fbfae681debcb https://www.encodeproject.org/files/ENCFF870KGA/@@download/ENCFF870KGA.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF372IKT bigBed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF870KGA 994780 ENCODE Processing Pipeline c7456f59adf1778fb9440ea78270013f https://www.encodeproject.org/files/ENCFF372IKT/@@download/ENCFF372IKT.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF857OGL bigBed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF344HKM 575165 ENCODE Processing Pipeline 0d90962c163ffe250afbaf107e3d5e3c https://www.encodeproject.org/files/ENCFF857OGL/@@download/ENCFF857OGL.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF408AOK bed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF272ODL, ENCFF389WXF, ENCFF782YCY, ENCFF922FWV 154100 ENCODE Processing Pipeline 13c0c63b50e3478d05cb72cf63224f93 https://www.encodeproject.org/files/ENCFF408AOK/@@download/ENCFF408AOK.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF979TFO bigBed narrowPeak peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF408AOK 386323 ENCODE Processing Pipeline 0f13a1393adc904376bf999ed7c384ed https://www.encodeproject.org/files/ENCFF979TFO/@@download/ENCFF979TFO.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF574YZU bigWig signal p-value ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF389WXF, ENCFF782YCY, ENCFF922FWV 584218246 ENCODE Processing Pipeline d8d0338a65d23c4703b2707e3ebe4e86 https://www.encodeproject.org/files/ENCFF574YZU/@@download/ENCFF574YZU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF809EOP bigWig signal p-value ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF272ODL, ENCFF782YCY, ENCFF922FWV 594705030 ENCODE Processing Pipeline c580450f7b4c0d078008d84028f09c78 https://www.encodeproject.org/files/ENCFF809EOP/@@download/ENCFF809EOP.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF135WIS bigWig signal p-value ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF272ODL, ENCFF389WXF, ENCFF782YCY, ENCFF922FWV 881438940 ENCODE Processing Pipeline 4b8383aa9ed6a55251b390a5288c4a53 https://www.encodeproject.org/files/ENCFF135WIS/@@download/ENCFF135WIS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF325YJJ bigWig fold change over control ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF389WXF, ENCFF782YCY, ENCFF922FWV 559290393 ENCODE Processing Pipeline 164fb60c8e383ca00642f2291dd206b3 https://www.encodeproject.org/files/ENCFF325YJJ/@@download/ENCFF325YJJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF598WNK bigWig fold change over control ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF272ODL, ENCFF782YCY, ENCFF922FWV 815726982 ENCODE Processing Pipeline 1f1601d4aa6de806b0a1199dc0ce6bd2 https://www.encodeproject.org/files/ENCFF598WNK/@@download/ENCFF598WNK.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF399KQJ bigWig fold change over control ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF272ODL, ENCFF389WXF, ENCFF782YCY, ENCFF922FWV 1092872927 ENCODE Processing Pipeline 120ba736e9fcc524349f78cda82b4b8d https://www.encodeproject.org/files/ENCFF399KQJ/@@download/ENCFF399KQJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF772NQS bed narrowPeak replicated peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF344HKM, ENCFF408AOK, ENCFF870KGA 82918 ENCODE Processing Pipeline c684481ac001c1e5a9e88b5bf4d99fe5 https://www.encodeproject.org/files/ENCFF772NQS/@@download/ENCFF772NQS.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF868JZJ bigBed narrowPeak replicated peaks ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF772NQS 235899 ENCODE Processing Pipeline 4e2c45876bae59eb6b11be435cdad137 https://www.encodeproject.org/files/ENCFF868JZJ/@@download/ENCFF868JZJ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002ARJ fastq reads ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1442956148 Bing Ren, UCSD 563d8c36b213a4a86af5c7c1b82e4bd0 SRA:SRR3653209 https://www.encodeproject.org/files/ENCFF002ARJ/@@download/ENCFF002ARJ.fastq.gz Illumina HiSeq 2000 released low read depth insufficient read depth for broad peaks control ENCFF002ARK fastq reads ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1664737173 Bing Ren, UCSD cd51f69408e6b67d80ca646112510039 SRA:SRR3653208 https://www.encodeproject.org/files/ENCFF002ARK/@@download/ENCFF002ARK.fastq.gz Illumina HiSeq 2000 released low read depth insufficient read depth for broad peaks control ENCFF768EUZ bam unfiltered alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARK, ENCFF806TVZ 1901658419 ENCODE Processing Pipeline e9bcde0c6aefd5222c6554bbe80141cf https://www.encodeproject.org/files/ENCFF768EUZ/@@download/ENCFF768EUZ.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF190AKR bam unfiltered alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARJ, ENCFF806TVZ 1595962157 ENCODE Processing Pipeline d0f10e4fac13655bf5943a9eee820837 https://www.encodeproject.org/files/ENCFF190AKR/@@download/ENCFF190AKR.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF444YOE bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARK, ENCFF806TVZ 1345264086 ENCODE Processing Pipeline 8ea015ccbda7b398f1100bdd4ba3eb5f https://www.encodeproject.org/files/ENCFF444YOE/@@download/ENCFF444YOE.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF934LFS bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARJ, ENCFF806TVZ 1123794698 ENCODE Processing Pipeline 5ea231fe1e54b920ef1d4a13413269d0 https://www.encodeproject.org/files/ENCFF934LFS/@@download/ENCFF934LFS.bam mm10-minimal archived low read depth insufficient read depth for broad peaks control ENCFF083GUK bam unfiltered alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARJ, ENCFF018NEO 1597765082 ENCODE Processing Pipeline b596d69986d5a412c93a34801eca13be https://www.encodeproject.org/files/ENCFF083GUK/@@download/ENCFF083GUK.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF405WIZ bam unfiltered alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARK, ENCFF018NEO 1903989066 ENCODE Processing Pipeline 8596f7c796f2fae1c246efd937313224 https://www.encodeproject.org/files/ENCFF405WIZ/@@download/ENCFF405WIZ.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF510NJP bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARJ, ENCFF018NEO 1123455422 ENCODE Processing Pipeline 48d28dc154e47476cec71c0a5aac77d4 https://www.encodeproject.org/files/ENCFF510NJP/@@download/ENCFF510NJP.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF879KSR bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARK, ENCFF018NEO 1344867889 ENCODE Processing Pipeline 5175d03459a4b8898202854f3d2df4dc https://www.encodeproject.org/files/ENCFF879KSR/@@download/ENCFF879KSR.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF836LLS bam unfiltered alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARJ, ENCFF018NEO 1307804304 ENCODE Processing Pipeline c3b86561a4a3eb6181e3d56e9b062ea0 https://www.encodeproject.org/files/ENCFF836LLS/@@download/ENCFF836LLS.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF829LXO bam unfiltered alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARK, ENCFF018NEO 1549610608 ENCODE Processing Pipeline e98c6cd74009f1f471605f150938f2bc https://www.encodeproject.org/files/ENCFF829LXO/@@download/ENCFF829LXO.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF681SBF bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARK, ENCFF018NEO 1027285219 ENCODE Processing Pipeline 1cca4fa4acd50e8faa671750c3d18ba3 https://www.encodeproject.org/files/ENCFF681SBF/@@download/ENCFF681SBF.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF319PHE bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARJ, ENCFF018NEO 859848677 ENCODE Processing Pipeline 83f5ddc47175636817ed553ee7e20bfc https://www.encodeproject.org/files/ENCFF319PHE/@@download/ENCFF319PHE.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF002AKB fastq reads ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1170771653 Bing Ren, UCSD 9521ea618f73f2e63dbd96722de5d776 SRA:SRR3652243 https://www.encodeproject.org/files/ENCFF002AKB/@@download/ENCFF002AKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQS/ released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF002AKD fastq reads ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1473721387 Bing Ren, UCSD 6a65e43a4bda922a3ed391f581d3451b SRA:SRR3652242 https://www.encodeproject.org/files/ENCFF002AKD/@@download/ENCFF002AKD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQU/ released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF032YIM bam alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKD, ENCFF806TVZ 1490284979 ENCODE Processing Pipeline bd0ea7f96e7e2905aaeb3eb8033f96b1 https://www.encodeproject.org/files/ENCFF032YIM/@@download/ENCFF032YIM.bam mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF922XFN bam alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKB, ENCFF806TVZ 1203308757 ENCODE Processing Pipeline 3f2a56bde6228eab854612e531dff6b3 https://www.encodeproject.org/files/ENCFF922XFN/@@download/ENCFF922XFN.bam mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF008BWN bed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032YIM, ENCFF720UVE 2548265 ENCODE Processing Pipeline 493987a19e46ac302f41cab6b28dfc6c https://www.encodeproject.org/files/ENCFF008BWN/@@download/ENCFF008BWN.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF816TNN bed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032YIM, ENCFF720UVE, ENCFF922XFN, ENCFF977HMC 3063467 ENCODE Processing Pipeline 09b2bf00015d432e65d628686a86c232 https://www.encodeproject.org/files/ENCFF816TNN/@@download/ENCFF816TNN.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF468KXB bigWig signal p-value ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032YIM, ENCFF720UVE 491650382 ENCODE Processing Pipeline 0c27c31c50649ab91cbb9e319b3436da https://www.encodeproject.org/files/ENCFF468KXB/@@download/ENCFF468KXB.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF942QWA bigWig fold change over control ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF922XFN, ENCFF977HMC 475922803 ENCODE Processing Pipeline 341f8e0fe7aa0552c848f4e013998b9b https://www.encodeproject.org/files/ENCFF942QWA/@@download/ENCFF942QWA.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF935GIZ bigBed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF714UKA 5085141 ENCODE Processing Pipeline 6202e9cd405c4ab73f237c270a4d100a https://www.encodeproject.org/files/ENCFF935GIZ/@@download/ENCFF935GIZ.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF766KJT bigWig signal p-value ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF922XFN, ENCFF977HMC 545809125 ENCODE Processing Pipeline e26f3603cede1fa1aee9fe4b00235136 https://www.encodeproject.org/files/ENCFF766KJT/@@download/ENCFF766KJT.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF493GMK bigWig fold change over control ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032YIM, ENCFF720UVE 536439762 ENCODE Processing Pipeline a9754a8fc7cef626717a1452f4d4d810 https://www.encodeproject.org/files/ENCFF493GMK/@@download/ENCFF493GMK.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF714UKA bed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF922XFN, ENCFF977HMC 2296825 ENCODE Processing Pipeline ee68abe62e30bef1ea80fa4184e66177 https://www.encodeproject.org/files/ENCFF714UKA/@@download/ENCFF714UKA.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF142KWM bigBed narrowPeak replicated peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF355UWJ 4359787 ENCODE Processing Pipeline f6952f5487826ae951e1959c6c07e84b https://www.encodeproject.org/files/ENCFF142KWM/@@download/ENCFF142KWM.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF983ZME bigBed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF008BWN 5425320 ENCODE Processing Pipeline 839ae84f6867059d8746d8a54de92aee https://www.encodeproject.org/files/ENCFF983ZME/@@download/ENCFF983ZME.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF314GPL bigBed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF816TNN 8234146 ENCODE Processing Pipeline 90e998d13fc713bbb82eeb91a17bdccd https://www.encodeproject.org/files/ENCFF314GPL/@@download/ENCFF314GPL.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF719SNG bigWig signal p-value ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032YIM, ENCFF720UVE, ENCFF922XFN, ENCFF977HMC 716769162 ENCODE Processing Pipeline 3a0f18ec9758d06930a79adbc0935cf0 https://www.encodeproject.org/files/ENCFF719SNG/@@download/ENCFF719SNG.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF651YWY bigWig fold change over control ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032YIM, ENCFF720UVE, ENCFF922XFN, ENCFF977HMC 957670395 ENCODE Processing Pipeline 6b87a7ca9d62d63dda7a30c0fd559dae https://www.encodeproject.org/files/ENCFF651YWY/@@download/ENCFF651YWY.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF355UWJ bed narrowPeak replicated peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF008BWN, ENCFF714UKA, ENCFF816TNN 1950673 ENCODE Processing Pipeline 3a406fcf29bdff501127e0f2c968da29 https://www.encodeproject.org/files/ENCFF355UWJ/@@download/ENCFF355UWJ.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF812RSE bam unfiltered alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKB, ENCFF018NEO 1486470859 ENCODE Processing Pipeline 5099082b95cc6a65e14632137ffc2bd8 https://www.encodeproject.org/files/ENCFF812RSE/@@download/ENCFF812RSE.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF525CVP bam unfiltered alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKD, ENCFF018NEO 1858132983 ENCODE Processing Pipeline a0014498d2728f79559b4db755509f7c https://www.encodeproject.org/files/ENCFF525CVP/@@download/ENCFF525CVP.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF783CQI bam alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKB, ENCFF018NEO 1203065015 ENCODE Processing Pipeline 8ccdd5ff02a106eed783dca24cff110e https://www.encodeproject.org/files/ENCFF783CQI/@@download/ENCFF783CQI.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF038APK bam alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKD, ENCFF018NEO 1490012417 ENCODE Processing Pipeline db48a854a10c3e6bd11c6e4405477143 https://www.encodeproject.org/files/ENCFF038APK/@@download/ENCFF038APK.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF856QUG bed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF038APK, ENCFF504TMU 2601080 ENCODE Processing Pipeline 72c18319bee70a4fe4e9de9c6e71a007 https://www.encodeproject.org/files/ENCFF856QUG/@@download/ENCFF856QUG.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF018EAV bed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF160FCQ, ENCFF783CQI 2327174 ENCODE Processing Pipeline d62da41078c6c5c47b5a088550551d11 https://www.encodeproject.org/files/ENCFF018EAV/@@download/ENCFF018EAV.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF099IOG bed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF038APK, ENCFF160FCQ, ENCFF504TMU, ENCFF783CQI 3245686 ENCODE Processing Pipeline 1d514db78344d2c40d2ef8efff336e77 https://www.encodeproject.org/files/ENCFF099IOG/@@download/ENCFF099IOG.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF880USB bigBed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF018EAV 5184168 ENCODE Processing Pipeline 475c57478d955e2d7b5aa05f9eebbf50 https://www.encodeproject.org/files/ENCFF880USB/@@download/ENCFF880USB.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF451HNQ bigBed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF856QUG 5526742 ENCODE Processing Pipeline 527c39e14b8ae375106b3aedc465d1a2 https://www.encodeproject.org/files/ENCFF451HNQ/@@download/ENCFF451HNQ.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF305QIC bigBed narrowPeak peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF099IOG 8720154 ENCODE Processing Pipeline 9a673bb60cd4357c2cc3e66f5c405ef7 https://www.encodeproject.org/files/ENCFF305QIC/@@download/ENCFF305QIC.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF913THE bigWig signal p-value ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF160FCQ, ENCFF783CQI 587527757 ENCODE Processing Pipeline a7d07c22a68a1b05401a45f64a1452a5 https://www.encodeproject.org/files/ENCFF913THE/@@download/ENCFF913THE.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF018MVB bigWig signal p-value ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF038APK, ENCFF504TMU 435299000 ENCODE Processing Pipeline 326499d560e6338a32a0b2593c430bc8 https://www.encodeproject.org/files/ENCFF018MVB/@@download/ENCFF018MVB.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF307OHB bigWig signal p-value ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF038APK, ENCFF160FCQ, ENCFF504TMU, ENCFF783CQI 949149167 ENCODE Processing Pipeline e8b24e0cd6f13406804fe4806f6b0030 https://www.encodeproject.org/files/ENCFF307OHB/@@download/ENCFF307OHB.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF266MON bigWig fold change over control ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF160FCQ, ENCFF783CQI 505537711 ENCODE Processing Pipeline 43d5c454edb15bb2fa621e8bd73439ed https://www.encodeproject.org/files/ENCFF266MON/@@download/ENCFF266MON.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF728MHR bigWig fold change over control ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF038APK, ENCFF504TMU 543855446 ENCODE Processing Pipeline 719395365672a3549a0957bd7f641c2a https://www.encodeproject.org/files/ENCFF728MHR/@@download/ENCFF728MHR.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF577SJR bigWig fold change over control ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF038APK, ENCFF160FCQ, ENCFF504TMU, ENCFF783CQI 1027043444 ENCODE Processing Pipeline a5994a97b981d0e2331c5edd4bb329e2 https://www.encodeproject.org/files/ENCFF577SJR/@@download/ENCFF577SJR.bigWig mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF474AUY bed narrowPeak replicated peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF018EAV, ENCFF099IOG, ENCFF856QUG 1925832 ENCODE Processing Pipeline 4565b84c4329b2e5e3d7bb2154853de1 https://www.encodeproject.org/files/ENCFF474AUY/@@download/ENCFF474AUY.bed.gz mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF952QAZ bigBed narrowPeak replicated peaks ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF474AUY 4310820 ENCODE Processing Pipeline ec0cfdd32cc34d25d40d96e8c7ee77aa https://www.encodeproject.org/files/ENCFF952QAZ/@@download/ENCFF952QAZ.bigBed mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF370JCI bam alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF307HYZ, ENCFF533PES, ENCFF806TVZ 3112472998 ENCODE Processing Pipeline 53a08f26f7eea868f49b8963d5173ce7 https://www.encodeproject.org/files/ENCFF370JCI/@@download/ENCFF370JCI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF669UYV bam alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF098VFT, ENCFF521VUV, ENCFF806TVZ 2977220758 ENCODE Processing Pipeline 1de2ffa33dbd2fdc24c972d80e899e59 https://www.encodeproject.org/files/ENCFF669UYV/@@download/ENCFF669UYV.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF521VUV fastq reads ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 1617370796 Bing Ren, UCSD c1d47a13aea59398c16c0bf21b18ed76 SRA:SRR3653374 https://www.encodeproject.org/files/ENCFF521VUV/@@download/ENCFF521VUV.fastq.gz Illumina HiSeq 2500 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF307HYZ fastq reads ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2920276278 Bing Ren, UCSD b5c686258f8f8b0dd14cb2ebeb6ba985 SRA:SRR3653372 https://www.encodeproject.org/files/ENCFF307HYZ/@@download/ENCFF307HYZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF533PES fastq reads ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 1699824646 Bing Ren, UCSD 2bf1f8d95a63f335b93916c3a7963811 SRA:SRR3653373 https://www.encodeproject.org/files/ENCFF533PES/@@download/ENCFF533PES.fastq.gz Illumina HiSeq 2500 /files/ENCFF418BAW/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF098VFT fastq reads ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2797011924 Bing Ren, UCSD 45328c68f8c57c9978190c982c9c258e SRA:SRR3653375 https://www.encodeproject.org/files/ENCFF098VFT/@@download/ENCFF098VFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF443VGP bed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF455EJT, ENCFF669UYV, ENCFF844LBC 3027438 ENCODE Processing Pipeline 04b3f4e982ada60c868dd1c4a2703000 https://www.encodeproject.org/files/ENCFF443VGP/@@download/ENCFF443VGP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF283AVQ bigBed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF443VGP 6645206 ENCODE Processing Pipeline c08d2fe445e2345eb26539c4ce5f563c https://www.encodeproject.org/files/ENCFF283AVQ/@@download/ENCFF283AVQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF085QSL bigBed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF910LXM 6398739 ENCODE Processing Pipeline 1d25e9927af45f546bea019c29029eab https://www.encodeproject.org/files/ENCFF085QSL/@@download/ENCFF085QSL.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF336KVQ bigBed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF605UEC 5855033 ENCODE Processing Pipeline 0139bd94f20ad8ade35024aff97878c9 https://www.encodeproject.org/files/ENCFF336KVQ/@@download/ENCFF336KVQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF605UEC bed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF370JCI, ENCFF455EJT, ENCFF669UYV, ENCFF844LBC 2688136 ENCODE Processing Pipeline 5bd05940be6ba7075a609ebd8308f853 https://www.encodeproject.org/files/ENCFF605UEC/@@download/ENCFF605UEC.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF910LXM bed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF370JCI, ENCFF455EJT, ENCFF844LBC 2886727 ENCODE Processing Pipeline b64c194a2e9e3ce655c24132fe598f27 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bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF461NHZ bigWig fold change over control ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF370JCI, ENCFF455EJT, ENCFF844LBC 1086500903 ENCODE Processing Pipeline 0cc4ee92491231c4ae21527589e51b92 https://www.encodeproject.org/files/ENCFF461NHZ/@@download/ENCFF461NHZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF252VWH bigWig fold change over control ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF370JCI, ENCFF455EJT, ENCFF669UYV, ENCFF844LBC 1606489784 ENCODE Processing Pipeline 11c0ca5b1e868fd650d3c0e6894f342b https://www.encodeproject.org/files/ENCFF252VWH/@@download/ENCFF252VWH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF776LTU bigBed narrowPeak replicated peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF480TAZ 4952537 ENCODE Processing Pipeline 99d05d80cc4e8f19a55f21aa9ed59045 https://www.encodeproject.org/files/ENCFF776LTU/@@download/ENCFF776LTU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF480TAZ bed narrowPeak replicated peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF443VGP, ENCFF605UEC, ENCFF910LXM 2817488 ENCODE Processing Pipeline 58416324809073cbef92313161403928 https://www.encodeproject.org/files/ENCFF480TAZ/@@download/ENCFF480TAZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF846CBS bam unfiltered alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF307HYZ, ENCFF533PES 5373149564 ENCODE Processing Pipeline 81e7d4da0326a4c834de39e553bfcae4 https://www.encodeproject.org/files/ENCFF846CBS/@@download/ENCFF846CBS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF221WYA bam unfiltered alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF098VFT, ENCFF521VUV 5132596293 ENCODE Processing Pipeline adbd2750a699c181154cb1f910e03fe5 https://www.encodeproject.org/files/ENCFF221WYA/@@download/ENCFF221WYA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF846DLR bam alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF098VFT, ENCFF521VUV 2976491402 ENCODE Processing Pipeline 8e1c9067d47af90a2b0570f8839b98ea https://www.encodeproject.org/files/ENCFF846DLR/@@download/ENCFF846DLR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF911ZQM bam alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF307HYZ, ENCFF533PES 3111713700 ENCODE Processing Pipeline 4b9217d154c290c030c8f3bfee6726f3 https://www.encodeproject.org/files/ENCFF911ZQM/@@download/ENCFF911ZQM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF518VRJ bed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF846DLR, ENCFF911ZQM 3023708 ENCODE Processing Pipeline 4675f8637c76503033b6c5ab3ec42bf9 https://www.encodeproject.org/files/ENCFF518VRJ/@@download/ENCFF518VRJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF270TMB bed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF846DLR 2849427 ENCODE Processing Pipeline 1759f0cace3c73f9681e880d8787b9b0 https://www.encodeproject.org/files/ENCFF270TMB/@@download/ENCFF270TMB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF913MOD bed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF911ZQM 2566629 ENCODE Processing Pipeline 4edd05e9ae78f8a5875eb6a9e13f7aac https://www.encodeproject.org/files/ENCFF913MOD/@@download/ENCFF913MOD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF684HJJ bigBed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF270TMB 6280226 ENCODE Processing Pipeline 5f419fd470f4fb612f1c2da44a48fff8 https://www.encodeproject.org/files/ENCFF684HJJ/@@download/ENCFF684HJJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF471CWV bigBed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF518VRJ 6645066 ENCODE Processing Pipeline 743c568bb0b03015e638825654416cc7 https://www.encodeproject.org/files/ENCFF471CWV/@@download/ENCFF471CWV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF476LMV bigBed narrowPeak peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF913MOD 5701600 ENCODE Processing Pipeline 71482f11638802475db00409f44652bb https://www.encodeproject.org/files/ENCFF476LMV/@@download/ENCFF476LMV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF366MNQ bigWig signal p-value ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF846DLR 1178499011 ENCODE Processing Pipeline d2b95a35c277e5833d28c13eed39588b https://www.encodeproject.org/files/ENCFF366MNQ/@@download/ENCFF366MNQ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF345YQO bigWig signal p-value ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF911ZQM 945872499 ENCODE Processing Pipeline c0ddaeb26a6279a717ce129dbd3d62f5 https://www.encodeproject.org/files/ENCFF345YQO/@@download/ENCFF345YQO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF667SMV bigWig signal p-value ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF846DLR, ENCFF911ZQM 1552831557 ENCODE Processing Pipeline a8370ecf9191cd2e0566ffd99ad885a8 https://www.encodeproject.org/files/ENCFF667SMV/@@download/ENCFF667SMV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF746TMT bigWig fold change over control ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF048BGA, ENCFF160VSE, ENCFF846DLR 1178613266 ENCODE Processing Pipeline 940f572cb01d383d39c341a28a6a1fdd https://www.encodeproject.org/files/ENCFF746TMT/@@download/ENCFF746TMT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF115GZO bigWig fold change over control ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF911ZQM 998795824 ENCODE Processing Pipeline 3ce1e18858b395f423a68b3cc09d7557 https://www.encodeproject.org/files/ENCFF115GZO/@@download/ENCFF115GZO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF330KGP bigWig fold change over control ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF846DLR, ENCFF911ZQM 1690222074 ENCODE Processing Pipeline 0f34b84438dc11c94e0475f8408524bb https://www.encodeproject.org/files/ENCFF330KGP/@@download/ENCFF330KGP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF137CII bed narrowPeak replicated peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF270TMB, ENCFF518VRJ, ENCFF913MOD 2646417 ENCODE Processing Pipeline bd8ee150cb01da2fadbfeedec67a1840 https://www.encodeproject.org/files/ENCFF137CII/@@download/ENCFF137CII.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF310RUW bigBed narrowPeak replicated peaks ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF137CII 4595285 ENCODE Processing Pipeline 1a74733d97b036199b527460d063ce2d https://www.encodeproject.org/files/ENCFF310RUW/@@download/ENCFF310RUW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KLD bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KLM 960963928 Bing Ren, UCSD dfb2ccc310966fff2d551a8e2594775a https://www.encodeproject.org/files/ENCFF001KLD/@@download/ENCFF001KLD.bam mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KLE bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLN 616929321 Bing Ren, UCSD 448a93a138117a41cbb1e9854bc3fd45 https://www.encodeproject.org/files/ENCFF001KLE/@@download/ENCFF001KLE.bam mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KLF bigBed broadPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXS 1923779 Bing Ren, UCSD 6bd1dd0f6376a800f7f8e41decdceca3 https://www.encodeproject.org/files/ENCFF001KLF/@@download/ENCFF001KLF.bigBed mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KLH bigWig signal ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KLD, ENCFF001KLE 61127722 Bing Ren, UCSD 906bbf7c399ade07c83719e227a2fe9f https://www.encodeproject.org/files/ENCFF001KLH/@@download/ENCFF001KLH.bigWig mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KLM fastq reads ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 883400267 Bing Ren, UCSD 06e522e7f6e3a18330c29cc33a855fae https://www.encodeproject.org/files/ENCFF001KLM/@@download/ENCFF001KLM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOE/ released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KLN fastq reads ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 581060170 Bing Ren, UCSD fb3f06b98abf626a135afd500f9bdbc3 https://www.encodeproject.org/files/ENCFF001KLN/@@download/ENCFF001KLN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNZ/ released low read length, inconsistent platforms, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF001XXS bed broadPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KLD, ENCFF001KLE 1035947 Bing Ren, UCSD 84832a593d3b9535c30e3529d7272b47 https://www.encodeproject.org/files/ENCFF001XXS/@@download/ENCFF001XXS.bed.gz mm9 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF004BDR bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLN, ENCFF806TVZ 537443301 ENCODE Processing Pipeline 93e2fdddb243a6e46d24ea1e1f1827e2 https://www.encodeproject.org/files/ENCFF004BDR/@@download/ENCFF004BDR.bam mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF459MYT bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KLM, ENCFF806TVZ 744912040 ENCODE Processing Pipeline 56a4081494171d86fbdfc45408a231fa https://www.encodeproject.org/files/ENCFF459MYT/@@download/ENCFF459MYT.bam mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF115STL bigBed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF945BSR 7822323 ENCODE Processing Pipeline 3e8b93c1db763d622458088a6ae3bcbc https://www.encodeproject.org/files/ENCFF115STL/@@download/ENCFF115STL.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF607SKO bigWig signal p-value ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF094RYR, ENCFF459MYT, ENCFF735UNG 414604459 ENCODE Processing Pipeline e24734958b377a70c38f8db5d123077b https://www.encodeproject.org/files/ENCFF607SKO/@@download/ENCFF607SKO.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF197HPT bigBed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF464QSZ 7001493 ENCODE Processing Pipeline e3cef9f690f78d4781ee4e57f76b4ee7 https://www.encodeproject.org/files/ENCFF197HPT/@@download/ENCFF197HPT.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF945BSR bed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF004BDR, ENCFF094RYR, ENCFF735UNG 2932567 ENCODE Processing Pipeline a0fbcf49a5ff7588a1e55b726a31a51c https://www.encodeproject.org/files/ENCFF945BSR/@@download/ENCFF945BSR.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF163OWV bed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF094RYR, ENCFF459MYT, ENCFF735UNG 3730481 ENCODE Processing Pipeline 3900857563624b4c536ad17797f3ebc5 https://www.encodeproject.org/files/ENCFF163OWV/@@download/ENCFF163OWV.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF464QSZ bed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF004BDR, ENCFF094RYR, ENCFF459MYT, ENCFF735UNG 2625318 ENCODE Processing Pipeline a608cf636c6e427a745eec746197257e https://www.encodeproject.org/files/ENCFF464QSZ/@@download/ENCFF464QSZ.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF032MVJ bigBed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF163OWV 10132224 ENCODE Processing Pipeline 4c42170a11eaf27ac88bf3dd704f0bb3 https://www.encodeproject.org/files/ENCFF032MVJ/@@download/ENCFF032MVJ.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF925HMY bigWig fold change over control ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF004BDR, ENCFF094RYR, ENCFF735UNG 273594953 ENCODE Processing Pipeline 85ef4871d6479958b236b305aeac933d https://www.encodeproject.org/files/ENCFF925HMY/@@download/ENCFF925HMY.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF697CTF bigWig fold change over control ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF004BDR, ENCFF094RYR, ENCFF459MYT, ENCFF735UNG 562234326 ENCODE Processing Pipeline 3ccc8208cb762835e2ae17e537c62d90 https://www.encodeproject.org/files/ENCFF697CTF/@@download/ENCFF697CTF.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF073EAS bigWig fold change over control ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF094RYR, ENCFF459MYT, ENCFF735UNG 385058244 ENCODE Processing Pipeline 0f1459aab4e8cf1c8e63dec944591d29 https://www.encodeproject.org/files/ENCFF073EAS/@@download/ENCFF073EAS.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF758WJA bed narrowPeak replicated peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF163OWV, ENCFF464QSZ, ENCFF945BSR 2958199 ENCODE Processing Pipeline 504a0b9672aeb4bf6160da264bb80688 https://www.encodeproject.org/files/ENCFF758WJA/@@download/ENCFF758WJA.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF330BJL bigWig signal p-value ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF004BDR, ENCFF094RYR, ENCFF735UNG 334206007 ENCODE Processing Pipeline 2cbd600d65e027b0b9ce93a1481d77be https://www.encodeproject.org/files/ENCFF330BJL/@@download/ENCFF330BJL.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF654VPW bigWig signal p-value ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF004BDR, ENCFF094RYR, ENCFF459MYT, ENCFF735UNG 512366266 ENCODE Processing Pipeline b21f4de943a592857030042f17c06cdc https://www.encodeproject.org/files/ENCFF654VPW/@@download/ENCFF654VPW.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF327KNH bigBed narrowPeak replicated peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF758WJA 5824829 ENCODE Processing Pipeline 8636a83e5d50df229221967e9b9fb254 https://www.encodeproject.org/files/ENCFF327KNH/@@download/ENCFF327KNH.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF790ROR bam unfiltered alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KLN, ENCFF018NEO 667075030 ENCODE Processing Pipeline 24c748b89502c038c1eb0320b728fc92 https://www.encodeproject.org/files/ENCFF790ROR/@@download/ENCFF790ROR.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF747KFG bam unfiltered alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLM, ENCFF018NEO 1036254742 ENCODE Processing Pipeline 0c2560a5b6071bf5d8f749b6aa7404da https://www.encodeproject.org/files/ENCFF747KFG/@@download/ENCFF747KFG.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF149KWW bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KLN, ENCFF018NEO 537373094 ENCODE Processing Pipeline 271bc5978020550254fd9cddfe849220 https://www.encodeproject.org/files/ENCFF149KWW/@@download/ENCFF149KWW.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF216IVM bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLM, ENCFF018NEO 744778535 ENCODE Processing Pipeline 2bfbda85b2d39251d358e9f39efbae28 https://www.encodeproject.org/files/ENCFF216IVM/@@download/ENCFF216IVM.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF652GKT bed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF216IVM, ENCFF443AQP 3466745 ENCODE Processing Pipeline fc73d4b2b6ceddc136589550136b25d3 https://www.encodeproject.org/files/ENCFF652GKT/@@download/ENCFF652GKT.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF808NIB bed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF149KWW, ENCFF171WKN, ENCFF216IVM, ENCFF443AQP 2704587 ENCODE Processing Pipeline ebbc5dfbab4b3bf3b785e25bca57995d https://www.encodeproject.org/files/ENCFF808NIB/@@download/ENCFF808NIB.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF929RDT bed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF149KWW, ENCFF171WKN, ENCFF443AQP 2924811 ENCODE Processing Pipeline b40c67f4f3fc192aadf75d987bc98b08 https://www.encodeproject.org/files/ENCFF929RDT/@@download/ENCFF929RDT.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF811OLR bigBed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF929RDT 7801436 ENCODE Processing Pipeline 7693a4f6e3e6dcfda758524b10e76b5e https://www.encodeproject.org/files/ENCFF811OLR/@@download/ENCFF811OLR.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF096ZMZ bigWig signal p-value ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF216IVM, ENCFF443AQP 429061670 ENCODE Processing Pipeline bef07612135bce7a6040310af00b1db8 https://www.encodeproject.org/files/ENCFF096ZMZ/@@download/ENCFF096ZMZ.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF563IDS bigBed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF652GKT 9492303 ENCODE Processing Pipeline dc47faeaa4408783cdb3272cb0a3f568 https://www.encodeproject.org/files/ENCFF563IDS/@@download/ENCFF563IDS.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF683BYV bigBed narrowPeak peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF808NIB 7217413 ENCODE Processing Pipeline 16644a457c5c732333674fa97d3c61da https://www.encodeproject.org/files/ENCFF683BYV/@@download/ENCFF683BYV.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF134BNT bigWig signal p-value ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF149KWW, ENCFF171WKN, ENCFF443AQP 333264152 ENCODE Processing Pipeline 96a558d0f6bc9bdcbb3787338491d624 https://www.encodeproject.org/files/ENCFF134BNT/@@download/ENCFF134BNT.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF874SNA bigWig fold change over control ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF216IVM, ENCFF443AQP 380019853 ENCODE Processing Pipeline 74ba937007ae142a35d0fc126672db59 https://www.encodeproject.org/files/ENCFF874SNA/@@download/ENCFF874SNA.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF752JEH bigWig signal p-value ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF149KWW, ENCFF171WKN, ENCFF216IVM, ENCFF443AQP 502660924 ENCODE Processing Pipeline 384c1d080e682d5711978414c2cfe29d https://www.encodeproject.org/files/ENCFF752JEH/@@download/ENCFF752JEH.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF281AJF bigWig fold change over control ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF149KWW, ENCFF171WKN, ENCFF443AQP 270458693 ENCODE Processing Pipeline b420a9c6c19ae187c8e6e4638d3dc3b6 https://www.encodeproject.org/files/ENCFF281AJF/@@download/ENCFF281AJF.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF850QFU bigWig fold change over control ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF149KWW, ENCFF171WKN, ENCFF216IVM, ENCFF443AQP 549663791 ENCODE Processing Pipeline 2990dd1e060b78314616456503d7b032 https://www.encodeproject.org/files/ENCFF850QFU/@@download/ENCFF850QFU.bigWig mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF396KCO bed narrowPeak replicated peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF652GKT, ENCFF808NIB, ENCFF929RDT 2988505 ENCODE Processing Pipeline 3133d72263367bf2a9a908e5ef904f4e https://www.encodeproject.org/files/ENCFF396KCO/@@download/ENCFF396KCO.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF299ENW bigBed narrowPeak replicated peaks ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF396KCO 5931379 ENCODE Processing Pipeline 2bbb756a1f641bcf4d6feaab06e3a9ef https://www.encodeproject.org/files/ENCFF299ENW/@@download/ENCFF299ENW.bigBed mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF361EPG bam alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF163MIK, ENCFF806TVZ 1738501042 ENCODE Processing Pipeline 32801016fdac9073349ccdb6f2280978 https://www.encodeproject.org/files/ENCFF361EPG/@@download/ENCFF361EPG.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF163MIK fastq reads ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2509269485 Bing Ren, UCSD 88e28884ba1d188bb14209c092342af9 SRA:SRR3651508 https://www.encodeproject.org/files/ENCFF163MIK/@@download/ENCFF163MIK.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released mild to moderate bottlenecking, inconsistent platforms ENCFF342JMB fastq reads ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2222541521 Bing Ren, UCSD 418328efbcda1b61de94b871fd2737cf SRA:SRR3651509 https://www.encodeproject.org/files/ENCFF342JMB/@@download/ENCFF342JMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF615ZQC bam alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF342JMB, ENCFF806TVZ 1591787897 ENCODE Processing Pipeline 84dfdf025790d9a0bcc1b118afb51a01 https://www.encodeproject.org/files/ENCFF615ZQC/@@download/ENCFF615ZQC.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF094BPK bed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF615ZQC, ENCFF674GBO 540952 ENCODE Processing Pipeline 8d6a174691093445b423682abd09af9f https://www.encodeproject.org/files/ENCFF094BPK/@@download/ENCFF094BPK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF255NCD bigBed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF094BPK 1741641 ENCODE Processing Pipeline 45c524a0a0be6e1050795735d49d1f3e https://www.encodeproject.org/files/ENCFF255NCD/@@download/ENCFF255NCD.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF594HUT bigBed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF813KPK 1804337 ENCODE Processing Pipeline a007861e65099c20d4e776af324e7dfa https://www.encodeproject.org/files/ENCFF594HUT/@@download/ENCFF594HUT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF977XHN bed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF361EPG, ENCFF541RVC, ENCFF615ZQC, ENCFF674GBO 622859 ENCODE Processing Pipeline 3e68fb4d65c7a064ff7c028390d2eeda https://www.encodeproject.org/files/ENCFF977XHN/@@download/ENCFF977XHN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF860XWN bigWig signal p-value ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF361EPG, ENCFF541RVC 441211081 ENCODE Processing Pipeline be594481705a4b9c0856e98487b67147 https://www.encodeproject.org/files/ENCFF860XWN/@@download/ENCFF860XWN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF813KPK bed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF361EPG, ENCFF541RVC 568818 ENCODE Processing Pipeline 67e384c1e1fe0cdccd08dbdf55382ecd https://www.encodeproject.org/files/ENCFF813KPK/@@download/ENCFF813KPK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF852UFY bigBed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF977XHN 1891417 ENCODE Processing Pipeline d77cd3e1fb2be3f977cf9780f45b8e45 https://www.encodeproject.org/files/ENCFF852UFY/@@download/ENCFF852UFY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF543OGE bigWig signal p-value ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF615ZQC, ENCFF674GBO 485665178 ENCODE Processing Pipeline cd5a3191ff4ab0c74dfe1a44158ffdef https://www.encodeproject.org/files/ENCFF543OGE/@@download/ENCFF543OGE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF126GWM bigWig signal p-value ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF361EPG, ENCFF541RVC, ENCFF615ZQC, ENCFF674GBO 1048080810 ENCODE Processing Pipeline 267b40867b9e6ad1a636c3671396537e https://www.encodeproject.org/files/ENCFF126GWM/@@download/ENCFF126GWM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF225WLJ bigWig fold change over control ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF361EPG, ENCFF541RVC 536829938 ENCODE Processing Pipeline 86df817050a49fff8e5a0f2f615d3320 https://www.encodeproject.org/files/ENCFF225WLJ/@@download/ENCFF225WLJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF637QBC bigWig fold change over control ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF615ZQC, ENCFF674GBO 497254853 ENCODE Processing Pipeline 55f26be32136692e7c72a3de306a5d5d https://www.encodeproject.org/files/ENCFF637QBC/@@download/ENCFF637QBC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF452ADP bigWig fold change over control ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF361EPG, ENCFF541RVC, ENCFF615ZQC, ENCFF674GBO 1016418094 ENCODE Processing Pipeline 638676f033486480b15e6cc6f598778f https://www.encodeproject.org/files/ENCFF452ADP/@@download/ENCFF452ADP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF083HSP bed narrowPeak replicated peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF094BPK, ENCFF813KPK, ENCFF977XHN 687843 ENCODE Processing Pipeline 4d9909b30d1c5ffad54e6b6202633d7d https://www.encodeproject.org/files/ENCFF083HSP/@@download/ENCFF083HSP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF196LDR bigBed narrowPeak replicated peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF083HSP 1605548 ENCODE Processing Pipeline 226f28bdd6373c6b8a70e91ee90c7169 https://www.encodeproject.org/files/ENCFF196LDR/@@download/ENCFF196LDR.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF359HLZ bam unfiltered alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF163MIK 2783796106 ENCODE Processing Pipeline fb4bf369d8c00a481dfc109b2f84e0eb https://www.encodeproject.org/files/ENCFF359HLZ/@@download/ENCFF359HLZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF997CMY bam unfiltered alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF342JMB 2484321433 ENCODE Processing Pipeline beda069ca9da43efea27d7f9504445c4 https://www.encodeproject.org/files/ENCFF997CMY/@@download/ENCFF997CMY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF936USI bam alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF342JMB 1591426415 ENCODE Processing Pipeline 920441fc183944faf15742025bdf27a3 https://www.encodeproject.org/files/ENCFF936USI/@@download/ENCFF936USI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF718JOG bam alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF163MIK 1738065324 ENCODE Processing Pipeline 2c9da3ab0e13759eee6c8960d2b3ca40 https://www.encodeproject.org/files/ENCFF718JOG/@@download/ENCFF718JOG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF052EIV bed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF718JOG 584442 ENCODE Processing Pipeline c745a9ff51fb04e36e59e13871e6f3de https://www.encodeproject.org/files/ENCFF052EIV/@@download/ENCFF052EIV.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF781SPX bed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF718JOG, ENCFF936USI, ENCFF962XXR 636824 ENCODE Processing Pipeline a78b98abd91b75d83c494bde75154397 https://www.encodeproject.org/files/ENCFF781SPX/@@download/ENCFF781SPX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF883SMP bed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF936USI, ENCFF962XXR 552584 ENCODE Processing Pipeline 3e4708d6c09189c466d697276f7aef2c https://www.encodeproject.org/files/ENCFF883SMP/@@download/ENCFF883SMP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF950FQC bigBed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF052EIV 1830207 ENCODE Processing Pipeline 02bea4ef4d90c1b607a63cae963e5fdd https://www.encodeproject.org/files/ENCFF950FQC/@@download/ENCFF950FQC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF568GFD bigBed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF883SMP 1754476 ENCODE Processing Pipeline 9caaf90ce9bad6b3a80ee1e4fa216876 https://www.encodeproject.org/files/ENCFF568GFD/@@download/ENCFF568GFD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF252EWL bigBed narrowPeak peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF781SPX 1902830 ENCODE Processing Pipeline f778ba87e9544b8f00a1376dc7f2a994 https://www.encodeproject.org/files/ENCFF252EWL/@@download/ENCFF252EWL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF608LXN bigWig signal p-value ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF936USI, ENCFF962XXR 580333807 ENCODE Processing Pipeline 518d2319882523381536358eb918e10d https://www.encodeproject.org/files/ENCFF608LXN/@@download/ENCFF608LXN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF310STY bigWig signal p-value ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF718JOG 623497785 ENCODE Processing Pipeline a8519bfcc5ccd293d1d42f92fb4289ed https://www.encodeproject.org/files/ENCFF310STY/@@download/ENCFF310STY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF747EWN bigWig signal p-value ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF718JOG, ENCFF936USI, ENCFF962XXR 983485583 ENCODE Processing Pipeline e78b8678d27ee67252d9078d307a6a85 https://www.encodeproject.org/files/ENCFF747EWN/@@download/ENCFF747EWN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF050NEL bigWig fold change over control ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF718JOG 629822444 ENCODE Processing Pipeline 42de4daa26659f021b84ba32cfb4973e https://www.encodeproject.org/files/ENCFF050NEL/@@download/ENCFF050NEL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF554CUH bigWig fold change over control ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF936USI, ENCFF962XXR 557571354 ENCODE Processing Pipeline 437c249c87801d39c210a9f1bd2a42cb https://www.encodeproject.org/files/ENCFF554CUH/@@download/ENCFF554CUH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF842FSB bigWig fold change over control ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF718JOG, ENCFF936USI, ENCFF962XXR 1176157668 ENCODE Processing Pipeline 844f1ddbe9f2859b0d67d4d868434828 https://www.encodeproject.org/files/ENCFF842FSB/@@download/ENCFF842FSB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF095ZPA bed narrowPeak replicated peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF052EIV, ENCFF781SPX, ENCFF883SMP 693304 ENCODE Processing Pipeline 4e9ac3799c5c8d7d89bd4534393df756 https://www.encodeproject.org/files/ENCFF095ZPA/@@download/ENCFF095ZPA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF883WGF bigBed narrowPeak replicated peaks ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF095ZPA 1608093 ENCODE Processing Pipeline 36f230d66ef79838bc1c636e957347cd https://www.encodeproject.org/files/ENCFF883WGF/@@download/ENCFF883WGF.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF085HLN bam alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF571ECK, ENCFF806TVZ 2584948285 ENCODE Processing Pipeline 4e48bce448ec3a43c14b59a8feeb774e https://www.encodeproject.org/files/ENCFF085HLN/@@download/ENCFF085HLN.bam mm10-minimal archived inconsistent platforms ENCFF590NMT bam alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF642GCV, ENCFF806TVZ 2742161688 ENCODE Processing Pipeline 2d69bc4ddbbeed8b4526c5fe5d074c0b https://www.encodeproject.org/files/ENCFF590NMT/@@download/ENCFF590NMT.bam mm10-minimal archived inconsistent platforms ENCFF642GCV fastq reads ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3087043598 Bing Ren, UCSD d5e0aacd32fb5849e750386c6823beee SRA:SRR3651690 https://www.encodeproject.org/files/ENCFF642GCV/@@download/ENCFF642GCV.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released inconsistent platforms ENCFF571ECK fastq reads ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2832854651 Bing Ren, UCSD c9ced74f1b7c9b59d8984664e82fa446 SRA:SRR3651691 https://www.encodeproject.org/files/ENCFF571ECK/@@download/ENCFF571ECK.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released inconsistent platforms ENCFF204FLS bed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF590NMT, ENCFF674GBO 3106540 ENCODE Processing Pipeline f656e98927733587b47af0662cfa0a5c https://www.encodeproject.org/files/ENCFF204FLS/@@download/ENCFF204FLS.bed.gz mm10-minimal archived inconsistent platforms ENCFF262CVR bed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF085HLN, ENCFF541RVC, ENCFF674GBO 2948584 ENCODE Processing Pipeline c08815993a21297b8b14624138d98fc5 https://www.encodeproject.org/files/ENCFF262CVR/@@download/ENCFF262CVR.bed.gz mm10-minimal archived inconsistent platforms ENCFF462SIS bed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF085HLN, ENCFF541RVC, ENCFF590NMT, ENCFF674GBO 2828040 ENCODE Processing Pipeline b20b69b5811b03a28299fc775980fe31 https://www.encodeproject.org/files/ENCFF462SIS/@@download/ENCFF462SIS.bed.gz mm10-minimal archived inconsistent platforms ENCFF075CUU bigBed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF462SIS 7646371 ENCODE Processing Pipeline c281cb47f7100cde368460ecb13df9d3 https://www.encodeproject.org/files/ENCFF075CUU/@@download/ENCFF075CUU.bigBed mm10-minimal archived inconsistent platforms ENCFF980PEJ bigBed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF204FLS 8337498 ENCODE Processing Pipeline 32e9dbfe7db1fcb307d26dbab0ee8db3 https://www.encodeproject.org/files/ENCFF980PEJ/@@download/ENCFF980PEJ.bigBed mm10-minimal archived inconsistent platforms ENCFF214BNV bigBed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF262CVR 7998459 ENCODE Processing Pipeline 7e3dba62f9ab4b8fcf077b869f49e2fe https://www.encodeproject.org/files/ENCFF214BNV/@@download/ENCFF214BNV.bigBed mm10-minimal archived inconsistent platforms ENCFF868QVJ bigWig signal p-value ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF590NMT, ENCFF674GBO 1028922115 ENCODE Processing Pipeline a6b43dfbf03d9d71d1074b228a154ce2 https://www.encodeproject.org/files/ENCFF868QVJ/@@download/ENCFF868QVJ.bigWig mm10-minimal archived inconsistent platforms ENCFF829ZEY bigWig signal p-value ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF085HLN, ENCFF541RVC, ENCFF590NMT, ENCFF674GBO 1181250030 ENCODE Processing Pipeline aa3439e8db9915990da26f141534f8f7 https://www.encodeproject.org/files/ENCFF829ZEY/@@download/ENCFF829ZEY.bigWig mm10-minimal archived inconsistent platforms ENCFF722LKE bigWig signal p-value ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF085HLN, ENCFF541RVC, ENCFF674GBO 946953298 ENCODE Processing Pipeline 5027d541739e2d24e001cbe34a216489 https://www.encodeproject.org/files/ENCFF722LKE/@@download/ENCFF722LKE.bigWig mm10-minimal archived inconsistent platforms ENCFF205QGZ bigWig fold change over control ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF590NMT, ENCFF674GBO 1031682816 ENCODE Processing Pipeline 4f01b9a5e7ba3f19b7a600965a632887 https://www.encodeproject.org/files/ENCFF205QGZ/@@download/ENCFF205QGZ.bigWig mm10-minimal archived inconsistent platforms ENCFF527MYQ bigWig fold change over control ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF085HLN, ENCFF541RVC, ENCFF674GBO 1039168415 ENCODE Processing Pipeline 5c43105111bf54de22f3561b1718846d https://www.encodeproject.org/files/ENCFF527MYQ/@@download/ENCFF527MYQ.bigWig mm10-minimal archived inconsistent platforms ENCFF725NPD bigBed narrowPeak replicated peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF631WFR 6233151 ENCODE Processing Pipeline 2499d9eb882846676ab5808222191dca https://www.encodeproject.org/files/ENCFF725NPD/@@download/ENCFF725NPD.bigBed mm10-minimal archived inconsistent platforms ENCFF115UJJ bigWig fold change over control ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF085HLN, ENCFF541RVC, ENCFF590NMT, ENCFF674GBO 1524729115 ENCODE Processing Pipeline 765d4059d89318e678088e1743645ed7 https://www.encodeproject.org/files/ENCFF115UJJ/@@download/ENCFF115UJJ.bigWig mm10-minimal archived inconsistent platforms ENCFF631WFR bed narrowPeak replicated peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF204FLS, ENCFF262CVR, ENCFF462SIS 3012456 ENCODE Processing Pipeline 885bd14d6ccbc4e3b5fd0aacd5bf52fb https://www.encodeproject.org/files/ENCFF631WFR/@@download/ENCFF631WFR.bed.gz mm10-minimal archived inconsistent platforms ENCFF102HEI bam unfiltered alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF642GCV 3634320125 ENCODE Processing Pipeline facbb952a698bbf6289a010ef165b77c https://www.encodeproject.org/files/ENCFF102HEI/@@download/ENCFF102HEI.bam mm10 released inconsistent platforms ENCFF395LAP bam unfiltered alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF571ECK 3356749306 ENCODE Processing Pipeline fbdc2cd30cdea379b111b136347c69ee https://www.encodeproject.org/files/ENCFF395LAP/@@download/ENCFF395LAP.bam mm10 released inconsistent platforms ENCFF674BRI bam alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF642GCV 2741633976 ENCODE Processing Pipeline 0e671622a5b4be019a6999ec9f94a794 https://www.encodeproject.org/files/ENCFF674BRI/@@download/ENCFF674BRI.bam mm10 released inconsistent platforms ENCFF915ZRV bam alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF571ECK 2584460078 ENCODE Processing Pipeline 4ff6c1647769f0bcb919ba6c72328c17 https://www.encodeproject.org/files/ENCFF915ZRV/@@download/ENCFF915ZRV.bam mm10 released inconsistent platforms ENCFF020NUG bed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF674BRI, ENCFF962XXR 3160534 ENCODE Processing Pipeline 8f4da826703844bdf045043b39645d0a https://www.encodeproject.org/files/ENCFF020NUG/@@download/ENCFF020NUG.bed.gz mm10 released inconsistent platforms ENCFF853GZZ bed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF915ZRV, ENCFF962XXR 2931714 ENCODE Processing Pipeline d6cf74b56e51dd2c69b0c135e0322930 https://www.encodeproject.org/files/ENCFF853GZZ/@@download/ENCFF853GZZ.bed.gz mm10 released inconsistent platforms ENCFF191UEY bed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF674BRI, ENCFF915ZRV, ENCFF962XXR 3353633 ENCODE Processing Pipeline 5d9b35e561263e8b364eac1df36d32e4 https://www.encodeproject.org/files/ENCFF191UEY/@@download/ENCFF191UEY.bed.gz mm10 released inconsistent platforms ENCFF170CHB bigBed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF020NUG 8540675 ENCODE Processing Pipeline fddc9fa5c97a30c9fb5dfbef643856ec https://www.encodeproject.org/files/ENCFF170CHB/@@download/ENCFF170CHB.bigBed mm10 released inconsistent platforms ENCFF717ZVN bigBed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF853GZZ 7894346 ENCODE Processing Pipeline 77ada5ae91efe4fb5432e4cd05404f17 https://www.encodeproject.org/files/ENCFF717ZVN/@@download/ENCFF717ZVN.bigBed mm10 released inconsistent platforms ENCFF248XUH bigBed narrowPeak peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF191UEY 9030864 ENCODE Processing Pipeline 8f5bd22193b2ceaa80888858d27a1f53 https://www.encodeproject.org/files/ENCFF248XUH/@@download/ENCFF248XUH.bigBed mm10 released inconsistent platforms ENCFF904LHC bigWig signal p-value ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF674BRI, ENCFF962XXR 1026594669 ENCODE Processing Pipeline 82466117e648ad57287550681457e7ec https://www.encodeproject.org/files/ENCFF904LHC/@@download/ENCFF904LHC.bigWig mm10 released inconsistent platforms ENCFF128VAG bigWig signal p-value ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF915ZRV, ENCFF962XXR 669886588 ENCODE Processing Pipeline d008615390f05dcfc4ff42963723bb37 https://www.encodeproject.org/files/ENCFF128VAG/@@download/ENCFF128VAG.bigWig mm10 released inconsistent platforms ENCFF023EHY bigWig signal p-value ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF674BRI, ENCFF915ZRV, ENCFF962XXR 1637933991 ENCODE Processing Pipeline da2a5c4aa8a00da245cff9ae0ec71694 https://www.encodeproject.org/files/ENCFF023EHY/@@download/ENCFF023EHY.bigWig mm10 released inconsistent platforms ENCFF742LBK bigWig fold change over control ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF674BRI, ENCFF962XXR 1205109089 ENCODE Processing Pipeline 550aad34f289193ad5937ca433e9fe77 https://www.encodeproject.org/files/ENCFF742LBK/@@download/ENCFF742LBK.bigWig mm10 released inconsistent platforms ENCFF103ITQ bigWig fold change over control ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF915ZRV, ENCFF962XXR 900765315 ENCODE Processing Pipeline 21d3b897129b2f891420128537c83821 https://www.encodeproject.org/files/ENCFF103ITQ/@@download/ENCFF103ITQ.bigWig mm10 released inconsistent platforms ENCFF704PEM bigWig fold change over control ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF674BRI, ENCFF915ZRV, ENCFF962XXR 1667766320 ENCODE Processing Pipeline 663ac5b89e7eb38679122b7eeb6eb6eb https://www.encodeproject.org/files/ENCFF704PEM/@@download/ENCFF704PEM.bigWig mm10 released inconsistent platforms ENCFF350TRR bigBed narrowPeak replicated peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF097SDI 6254301 ENCODE Processing Pipeline bcd42ffa502af661ee7d495d94b4f0a2 https://www.encodeproject.org/files/ENCFF350TRR/@@download/ENCFF350TRR.bigBed mm10 released inconsistent platforms ENCFF097SDI bed narrowPeak replicated peaks ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF020NUG, ENCFF191UEY, ENCFF853GZZ 3110541 ENCODE Processing Pipeline 0a2a1c5fe19b82160bd47cb06ab0275f https://www.encodeproject.org/files/ENCFF097SDI/@@download/ENCFF097SDI.bed.gz mm10 released inconsistent platforms ENCFF325BRZ fastq reads ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2289971110 Bing Ren, UCSD 5179f8c69a260dbc9499759679e9b43e SRA:SRR3651820 https://www.encodeproject.org/files/ENCFF325BRZ/@@download/ENCFF325BRZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF714RJJ fastq reads ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2349386794 Bing Ren, UCSD 2468949d886ce5895cf9274236267e18 SRA:SRR3651819 https://www.encodeproject.org/files/ENCFF714RJJ/@@download/ENCFF714RJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF036OYI bam alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF714RJJ, ENCFF806TVZ 1353030334 ENCODE Processing Pipeline 04c1a072f074203004dfc7ef50c11a54 https://www.encodeproject.org/files/ENCFF036OYI/@@download/ENCFF036OYI.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF099KYJ bam alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF325BRZ, ENCFF806TVZ 1367351623 ENCODE Processing Pipeline 2d55aa74537d3874dadd7f3b9de197fe https://www.encodeproject.org/files/ENCFF099KYJ/@@download/ENCFF099KYJ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF125ENQ bed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF036OYI, ENCFF189CVV 1781242 ENCODE Processing Pipeline e17192382ba28a532ebd5252f09b54cc https://www.encodeproject.org/files/ENCFF125ENQ/@@download/ENCFF125ENQ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF869IHQ bed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF036OYI, ENCFF099KYJ, ENCFF189CVV, ENCFF366PSQ 1980599 ENCODE Processing Pipeline 4564f9c22c26301f457a7c637413096c https://www.encodeproject.org/files/ENCFF869IHQ/@@download/ENCFF869IHQ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF590YHK bigBed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF311APP 3195849 ENCODE Processing Pipeline 15d49197376c0d1d8511937e30e950ee https://www.encodeproject.org/files/ENCFF590YHK/@@download/ENCFF590YHK.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF108AQQ bigBed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF125ENQ 4072838 ENCODE Processing Pipeline 7c5317927850dbde27827edad2e10e4d https://www.encodeproject.org/files/ENCFF108AQQ/@@download/ENCFF108AQQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF567HTJ bigBed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF869IHQ 4401363 ENCODE Processing Pipeline b702ef5fa71acd77cea4e06926936534 https://www.encodeproject.org/files/ENCFF567HTJ/@@download/ENCFF567HTJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF311APP bed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF099KYJ, ENCFF366PSQ 1357407 ENCODE Processing Pipeline 61eaa30928bfd0b9486f1eb83070e2ad https://www.encodeproject.org/files/ENCFF311APP/@@download/ENCFF311APP.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF245FCC bigWig signal p-value ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF099KYJ, ENCFF366PSQ 447804318 ENCODE Processing Pipeline a8c9f3377ce7655f07ae4d4fb3ab40db https://www.encodeproject.org/files/ENCFF245FCC/@@download/ENCFF245FCC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF907GZZ bigWig signal p-value ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF036OYI, ENCFF099KYJ, ENCFF189CVV, ENCFF366PSQ 933650269 ENCODE Processing Pipeline d9071bbb8e55ca171f049dd526e155bd https://www.encodeproject.org/files/ENCFF907GZZ/@@download/ENCFF907GZZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF495OPJ bigWig signal p-value ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF036OYI, ENCFF189CVV 484475350 ENCODE Processing Pipeline 64115676d55804d9cd03665ae83f65c8 https://www.encodeproject.org/files/ENCFF495OPJ/@@download/ENCFF495OPJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF269ZNW bigWig fold change over control ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF099KYJ, ENCFF366PSQ 498790697 ENCODE Processing Pipeline 8f614655173c7c756bd3c0fd3e57ef44 https://www.encodeproject.org/files/ENCFF269ZNW/@@download/ENCFF269ZNW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF438LDN bigWig fold change over control ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF036OYI, ENCFF189CVV 502139281 ENCODE Processing Pipeline da3503d682b780f16082d413db8efd37 https://www.encodeproject.org/files/ENCFF438LDN/@@download/ENCFF438LDN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF057XSH bigWig fold change over control ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF036OYI, ENCFF099KYJ, ENCFF189CVV, ENCFF366PSQ 996746669 ENCODE Processing Pipeline 84ccc945d7ce5ab6e80a69c9dcd064de https://www.encodeproject.org/files/ENCFF057XSH/@@download/ENCFF057XSH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF823GRZ bed narrowPeak replicated peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF125ENQ, ENCFF311APP, ENCFF869IHQ 1163257 ENCODE Processing Pipeline ffba76e18fbc65d2099b87f2df9eb66f https://www.encodeproject.org/files/ENCFF823GRZ/@@download/ENCFF823GRZ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF671SEU bigBed narrowPeak replicated peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF823GRZ 2753483 ENCODE Processing Pipeline bf18130b89cbefd39f50bb13bd4022f0 https://www.encodeproject.org/files/ENCFF671SEU/@@download/ENCFF671SEU.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF791SZF bam unfiltered alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF714RJJ 2644687460 ENCODE Processing Pipeline c1813e4bf91b68f2766b0a4393309b33 https://www.encodeproject.org/files/ENCFF791SZF/@@download/ENCFF791SZF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF225EXK bam unfiltered alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF325BRZ 2593049939 ENCODE Processing Pipeline 559aa7ea478bcf0496ce7b140134b44c https://www.encodeproject.org/files/ENCFF225EXK/@@download/ENCFF225EXK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF604ABD bam alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF714RJJ 1352720085 ENCODE Processing Pipeline 71e62b68cb390cdef497ee4ea50252b0 https://www.encodeproject.org/files/ENCFF604ABD/@@download/ENCFF604ABD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF848BQN bam alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF325BRZ 1367078986 ENCODE Processing Pipeline 4c32e6c2f555d8dcb6bee1f6721d93b1 https://www.encodeproject.org/files/ENCFF848BQN/@@download/ENCFF848BQN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF236AZD bed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF848BQN, ENCFF956XFI 1423793 ENCODE Processing Pipeline 08bb0918bf2666ea5984735240b44acc https://www.encodeproject.org/files/ENCFF236AZD/@@download/ENCFF236AZD.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF252DNV bed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF604ABD, ENCFF837CRH 1765934 ENCODE Processing Pipeline 7d54780f3a7e5af0e5678e9393ba2670 https://www.encodeproject.org/files/ENCFF252DNV/@@download/ENCFF252DNV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF193RZZ bed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF604ABD, ENCFF837CRH, ENCFF848BQN, ENCFF956XFI 1998446 ENCODE Processing Pipeline f68040661b9ad324184c2a7d5003870b https://www.encodeproject.org/files/ENCFF193RZZ/@@download/ENCFF193RZZ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF175NXO bigBed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF236AZD 3366134 ENCODE Processing Pipeline 2862c58a31ae7e468a4510c0a7fc7cc2 https://www.encodeproject.org/files/ENCFF175NXO/@@download/ENCFF175NXO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF881HZP bigBed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF252DNV 4079747 ENCODE Processing Pipeline f93d22a75abb33a88d33e894189898b8 https://www.encodeproject.org/files/ENCFF881HZP/@@download/ENCFF881HZP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF586TPP bigBed narrowPeak peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF193RZZ 5681683 ENCODE Processing Pipeline 485032eb3d198482f597232aa699563d https://www.encodeproject.org/files/ENCFF586TPP/@@download/ENCFF586TPP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF266OHT bigWig signal p-value ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF848BQN, ENCFF956XFI 633029022 ENCODE Processing Pipeline a5a4648ac21df089edee36270e48fa87 https://www.encodeproject.org/files/ENCFF266OHT/@@download/ENCFF266OHT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF956JCE bigWig signal p-value ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF604ABD, ENCFF837CRH 643313583 ENCODE Processing Pipeline 0d5324a0fcccc41646a547acdb9fe691 https://www.encodeproject.org/files/ENCFF956JCE/@@download/ENCFF956JCE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF804YKK bigWig signal p-value ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF604ABD, ENCFF837CRH, ENCFF848BQN, ENCFF956XFI 990924167 ENCODE Processing Pipeline a51eb90c0a1d43581b3ef77dfd12a19d https://www.encodeproject.org/files/ENCFF804YKK/@@download/ENCFF804YKK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF667SDG bigWig fold change over control ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF848BQN, ENCFF956XFI 615850347 ENCODE Processing Pipeline f8868e08dba0037202f30bae16f97df7 https://www.encodeproject.org/files/ENCFF667SDG/@@download/ENCFF667SDG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF669PVX bigWig fold change over control ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF604ABD, ENCFF837CRH 615075235 ENCODE Processing Pipeline 73c2c6eb10e211a56f7ef52e4c5fb81e https://www.encodeproject.org/files/ENCFF669PVX/@@download/ENCFF669PVX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF107UHG bigWig fold change over control ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF604ABD, ENCFF837CRH, ENCFF848BQN, ENCFF956XFI 1207403004 ENCODE Processing Pipeline 70a03a6f9a31f9ea60977482a93c51d1 https://www.encodeproject.org/files/ENCFF107UHG/@@download/ENCFF107UHG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF026QRB bed narrowPeak replicated peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF193RZZ, ENCFF236AZD, ENCFF252DNV 1214538 ENCODE Processing Pipeline a324dca823d144f9ea8ae9d818d7ae3c https://www.encodeproject.org/files/ENCFF026QRB/@@download/ENCFF026QRB.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF588VWJ bigBed narrowPeak replicated peaks ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF026QRB 2807767 ENCODE Processing Pipeline 151762d418396a559408b052427ed7bf https://www.encodeproject.org/files/ENCFF588VWJ/@@download/ENCFF588VWJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF002ETX fastq reads ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1669195264 Bing Ren, UCSD b64c174c977aa2e5773c353c2635c648 SRA:SRR3651466 https://www.encodeproject.org/files/ENCFF002ETX/@@download/ENCFF002ETX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXU/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002ETZ fastq reads ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1169195071 Bing Ren, UCSD 8d0875a17cdd8e943d3a78155ba720f6 SRA:SRR3651464 https://www.encodeproject.org/files/ENCFF002ETZ/@@download/ENCFF002ETZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXS/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF026YKU bam alignments ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETX, ENCFF806TVZ 1181541622 ENCODE Processing Pipeline 81c9d5e3b35dc2181cd23c4e49c37c98 https://www.encodeproject.org/files/ENCFF026YKU/@@download/ENCFF026YKU.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF306HBH fastq reads ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 318649493 Bing Ren, UCSD 5a02837e02750d31b5102812f8c19666 SRA:SRR3651465 https://www.encodeproject.org/files/ENCFF306HBH/@@download/ENCFF306HBH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXS/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF876CIX bam alignments ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETZ, ENCFF306HBH, ENCFF806TVZ 1083834631 ENCODE Processing Pipeline 0917a186c9bb1e03496650130cd702e2 https://www.encodeproject.org/files/ENCFF876CIX/@@download/ENCFF876CIX.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF380MTD bed narrowPeak peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF876CIX 2482087 ENCODE Processing Pipeline fef4be0e36ad50abc13017f0e92b918f https://www.encodeproject.org/files/ENCFF380MTD/@@download/ENCFF380MTD.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF912ZLO bed narrowPeak peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF026YKU, ENCFF532IQU, ENCFF540VMM 3008935 ENCODE Processing Pipeline 8d333dce0009ababfdcdfbea2c1b1960 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https://www.encodeproject.org/files/ENCFF291EBE/@@download/ENCFF291EBE.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF047IMJ bed narrowPeak peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF366SPT, ENCFF394IRO, ENCFF742VJP 3006308 ENCODE Processing Pipeline c56807901e745bbef9a618a1164c87b3 https://www.encodeproject.org/files/ENCFF047IMJ/@@download/ENCFF047IMJ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF017AMU bigBed narrowPeak peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF291EBE 6111286 ENCODE Processing Pipeline fa5c3f72b10ad481ac593d0b6ea3e4d4 https://www.encodeproject.org/files/ENCFF017AMU/@@download/ENCFF017AMU.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF335ZOU bigBed narrowPeak peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF047IMJ 6997440 ENCODE Processing Pipeline e545edc5ee55428ae6ea824d76640886 https://www.encodeproject.org/files/ENCFF335ZOU/@@download/ENCFF335ZOU.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF737SAO bigWig signal p-value ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF675TWH, ENCFF742VJP 542109758 ENCODE Processing Pipeline 224d945a022023f183cc9e302c01d36e https://www.encodeproject.org/files/ENCFF737SAO/@@download/ENCFF737SAO.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF706RYT bigBed narrowPeak peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF384FFN 7189910 ENCODE Processing Pipeline 8d7552ec0b481ac7908b5548d6670dca https://www.encodeproject.org/files/ENCFF706RYT/@@download/ENCFF706RYT.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF807VXI bigWig signal p-value ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF366SPT, ENCFF394IRO, ENCFF742VJP 675672692 ENCODE Processing Pipeline e8eeaf05a2605c605215a0d0c9323b1d https://www.encodeproject.org/files/ENCFF807VXI/@@download/ENCFF807VXI.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF153DZR bigWig signal p-value ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF366SPT, ENCFF394IRO, ENCFF675TWH, ENCFF742VJP 859392741 ENCODE Processing Pipeline 76460ee6c2eb9206154548f3d10060a1 https://www.encodeproject.org/files/ENCFF153DZR/@@download/ENCFF153DZR.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF409NHB bigWig fold change over control ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF675TWH, ENCFF742VJP 562972810 ENCODE Processing Pipeline 6b515e6f8f216424186a8ed8b343b469 https://www.encodeproject.org/files/ENCFF409NHB/@@download/ENCFF409NHB.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF861UKG bigWig fold change over control ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF366SPT, ENCFF394IRO, ENCFF742VJP 592694287 ENCODE Processing Pipeline d260579448a2b75b8be167af308275e6 https://www.encodeproject.org/files/ENCFF861UKG/@@download/ENCFF861UKG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF069GVS bigWig fold change over control ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF366SPT, ENCFF394IRO, ENCFF675TWH, ENCFF742VJP 864166659 ENCODE Processing Pipeline ac6865d30020668d22cf160000db6216 https://www.encodeproject.org/files/ENCFF069GVS/@@download/ENCFF069GVS.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF417IPS bed narrowPeak replicated peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF047IMJ, ENCFF291EBE, ENCFF384FFN 2498808 ENCODE Processing Pipeline d3629c05b573575e1828a557d107af4e https://www.encodeproject.org/files/ENCFF417IPS/@@download/ENCFF417IPS.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF416IDJ bigBed narrowPeak replicated peaks ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF417IPS 4518076 ENCODE Processing Pipeline ad7d9b909d131eadd37a7ca766fd6094 https://www.encodeproject.org/files/ENCFF416IDJ/@@download/ENCFF416IDJ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF065AXF bam alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF622PYT, ENCFF806TVZ, ENCFF898XLC 2777388030 ENCODE Processing Pipeline 702876975b0aa8fc82b2b655932945d1 https://www.encodeproject.org/files/ENCFF065AXF/@@download/ENCFF065AXF.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF622PYT fastq reads ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3036721543 Bing Ren, UCSD 373d1a00875b8aed59e29a017261da01 SRA:SRR3652385 https://www.encodeproject.org/files/ENCFF622PYT/@@download/ENCFF622PYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF454JVE fastq reads ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3256884150 Bing Ren, UCSD 7019c98aa668ac4faf58c3a64db84f51 SRA:SRR3652384 https://www.encodeproject.org/files/ENCFF454JVE/@@download/ENCFF454JVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF898XLC fastq reads ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 484288441 Bing Ren, UCSD 4e07b8faeab7a77c5854f50873bb40db SRA:SRR3652386 https://www.encodeproject.org/files/ENCFF898XLC/@@download/ENCFF898XLC.fastq.gz Illumina HiSeq 2500 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF219RJB bam alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF454JVE, ENCFF806TVZ 2621119506 ENCODE Processing Pipeline dace73ad24f1ea5d2601f1ed638a08ef https://www.encodeproject.org/files/ENCFF219RJB/@@download/ENCFF219RJB.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF423GDK bed narrowPeak peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF065AXF, ENCFF275UYN, ENCFF301ZSF 1808633 ENCODE Processing Pipeline 264db11d4888933ddf414444bfe7c76a https://www.encodeproject.org/files/ENCFF423GDK/@@download/ENCFF423GDK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF682IRJ bed 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mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF175SBW bigWig signal p-value ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF065AXF, ENCFF219RJB, ENCFF275UYN, ENCFF301ZSF 1245334218 ENCODE Processing Pipeline 376eedc2c3c2511617ef73c87fbcb7c7 https://www.encodeproject.org/files/ENCFF175SBW/@@download/ENCFF175SBW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF344JKZ bigWig fold change over control ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF065AXF, ENCFF275UYN, ENCFF301ZSF 1060946663 ENCODE Processing Pipeline 05548b84f4943a71766d919b04f7b8cb https://www.encodeproject.org/files/ENCFF344JKZ/@@download/ENCFF344JKZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF788QGG bigWig fold change over control ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF219RJB, ENCFF275UYN, ENCFF301ZSF 980222146 ENCODE Processing Pipeline 851acc787c27af3104225c729330eb31 https://www.encodeproject.org/files/ENCFF788QGG/@@download/ENCFF788QGG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF622VTK bigWig fold change over control ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF065AXF, ENCFF219RJB, ENCFF275UYN, ENCFF301ZSF 1501120358 ENCODE Processing Pipeline 55e9387729a235cf2cac6f58febf90b7 https://www.encodeproject.org/files/ENCFF622VTK/@@download/ENCFF622VTK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF192FUW bed narrowPeak replicated peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF396TYL, ENCFF423GDK, ENCFF682IRJ 1181052 ENCODE Processing Pipeline 0fb20124bd727b64bb411efe8fae632f https://www.encodeproject.org/files/ENCFF192FUW/@@download/ENCFF192FUW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF916NXO bigBed narrowPeak replicated peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF192FUW 2409295 ENCODE Processing Pipeline 182929a0ba89204fbc9f497fdb7c69c0 https://www.encodeproject.org/files/ENCFF916NXO/@@download/ENCFF916NXO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF145WLO bam unfiltered alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF622PYT, ENCFF898XLC 4134378590 ENCODE Processing Pipeline b199bf8118c8b7f8d8dcc6ff155ea204 https://www.encodeproject.org/files/ENCFF145WLO/@@download/ENCFF145WLO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF505RER bam unfiltered alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF454JVE 3815408526 ENCODE Processing Pipeline 9b2bce71d91fd31b556ae974896241d2 https://www.encodeproject.org/files/ENCFF505RER/@@download/ENCFF505RER.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF810VYR bam alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF454JVE 2620607914 ENCODE Processing Pipeline 54db708581a7865b8ed55c6d6f032719 https://www.encodeproject.org/files/ENCFF810VYR/@@download/ENCFF810VYR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF800KJJ bam alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF622PYT, ENCFF898XLC 2776784814 ENCODE Processing Pipeline fa51594fd3104b7f2ccfc3a536ff45cc https://www.encodeproject.org/files/ENCFF800KJJ/@@download/ENCFF800KJJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF955ZUT bed narrowPeak peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF231HNB, ENCFF396QPU, ENCFF800KJJ 1901641 ENCODE Processing Pipeline d36ea3af2338f6ca72163a0a950ecd52 https://www.encodeproject.org/files/ENCFF955ZUT/@@download/ENCFF955ZUT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF974BUS bed narrowPeak peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF810VYR 1628202 ENCODE Processing Pipeline 578a0a7c491d2121489acd3e620bbfc6 https://www.encodeproject.org/files/ENCFF974BUS/@@download/ENCFF974BUS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF029ZJG bed narrowPeak peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF800KJJ, ENCFF810VYR 1876272 ENCODE Processing Pipeline 60a3b638867c5fa4a86ee890e6438f4c https://www.encodeproject.org/files/ENCFF029ZJG/@@download/ENCFF029ZJG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF478PCB bigBed narrowPeak peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF955ZUT 3807314 ENCODE Processing Pipeline 9c5977d9544e6fcc55815809072e75a5 https://www.encodeproject.org/files/ENCFF478PCB/@@download/ENCFF478PCB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF490EPU bigBed narrowPeak peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF974BUS 3191402 ENCODE Processing Pipeline 768abdea1957f4b69755a50da7f4815f https://www.encodeproject.org/files/ENCFF490EPU/@@download/ENCFF490EPU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF833FHB bigBed narrowPeak peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF029ZJG 4604997 ENCODE Processing Pipeline 39adca463481f55ec4f7eafb836aeb7e https://www.encodeproject.org/files/ENCFF833FHB/@@download/ENCFF833FHB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF922CFS bigWig signal p-value ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF231HNB, ENCFF396QPU, ENCFF800KJJ 925986663 ENCODE Processing Pipeline d79e14fc78003ef97da5b679a508d1fc https://www.encodeproject.org/files/ENCFF922CFS/@@download/ENCFF922CFS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF477NPE bigWig signal p-value ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF810VYR 761917729 ENCODE Processing Pipeline 6caa28f102cdb3efb11285008f67d946 https://www.encodeproject.org/files/ENCFF477NPE/@@download/ENCFF477NPE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF482CQC bigWig signal p-value ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF800KJJ, ENCFF810VYR 1567216987 ENCODE Processing Pipeline ed8e26802e58677c135f4045986fd239 https://www.encodeproject.org/files/ENCFF482CQC/@@download/ENCFF482CQC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF320KJO bigWig fold change over control ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF231HNB, ENCFF396QPU, ENCFF800KJJ 1127920186 ENCODE Processing Pipeline b161da15366c35ba6a4afdb562b5c592 https://www.encodeproject.org/files/ENCFF320KJO/@@download/ENCFF320KJO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF885QAI bigWig fold change over control ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF810VYR 883990803 ENCODE Processing Pipeline 70b0e484254b97426184205520f6d23b https://www.encodeproject.org/files/ENCFF885QAI/@@download/ENCFF885QAI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF914LRA bigWig fold change over control ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF231HNB, ENCFF396QPU, ENCFF800KJJ, ENCFF810VYR 1586253889 ENCODE Processing Pipeline d88384302b13fef84db181361e6e30f3 https://www.encodeproject.org/files/ENCFF914LRA/@@download/ENCFF914LRA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF449NEX bed narrowPeak replicated peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF029ZJG, ENCFF955ZUT, ENCFF974BUS 1191641 ENCODE Processing Pipeline b48971aa847aa1277759c8214854d448 https://www.encodeproject.org/files/ENCFF449NEX/@@download/ENCFF449NEX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF590IXH bigBed narrowPeak replicated peaks ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF449NEX 2403606 ENCODE Processing Pipeline f554dbafd08549162a8224ca74566aa5 https://www.encodeproject.org/files/ENCFF590IXH/@@download/ENCFF590IXH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF523TDL fastq reads ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2209126942 Bing Ren, UCSD f375f79b996895e98c4642082f536fd0 SRA:SRR3651246 https://www.encodeproject.org/files/ENCFF523TDL/@@download/ENCFF523TDL.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF817WRW fastq reads ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2411177025 Bing Ren, UCSD 401e5908b4466556ce43e35c557a3033 SRA:SRR3651245 https://www.encodeproject.org/files/ENCFF817WRW/@@download/ENCFF817WRW.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF567DRW bam alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF523TDL, ENCFF806TVZ 1730409585 ENCODE Processing Pipeline ded3c6848d6d6d539cfcc74e8cd4c7a5 https://www.encodeproject.org/files/ENCFF567DRW/@@download/ENCFF567DRW.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF594EIM bam alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF817WRW 1467529724 ENCODE Processing Pipeline cfa3d154e7ef867b4189ad1bec86be9f https://www.encodeproject.org/files/ENCFF594EIM/@@download/ENCFF594EIM.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF371ZRY bed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF567DRW, ENCFF594EIM 995938 ENCODE Processing Pipeline d5ee73f8e17400096a37c43307a930f4 https://www.encodeproject.org/files/ENCFF371ZRY/@@download/ENCFF371ZRY.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF620XSX bed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF567DRW 950467 ENCODE Processing Pipeline 79737a9921d7258cc5f33057f216d082 https://www.encodeproject.org/files/ENCFF620XSX/@@download/ENCFF620XSX.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF638DHB bed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF594EIM 906810 ENCODE Processing Pipeline 40c1bad90ca4290b63e6e0dcc9299068 https://www.encodeproject.org/files/ENCFF638DHB/@@download/ENCFF638DHB.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF768LKU bigBed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF638DHB 2805509 ENCODE Processing Pipeline 1b9c5605f61ddaeeec165dc0d1e1e62b https://www.encodeproject.org/files/ENCFF768LKU/@@download/ENCFF768LKU.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF216BDC bigWig signal p-value ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF567DRW 712869094 ENCODE Processing Pipeline 61765956d1d2aa3722283ae1f924bc5c https://www.encodeproject.org/files/ENCFF216BDC/@@download/ENCFF216BDC.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF950CGT bigBed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF620XSX 2917957 ENCODE Processing Pipeline b0f883e546a511deee738af624264f1c https://www.encodeproject.org/files/ENCFF950CGT/@@download/ENCFF950CGT.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF314BKL bigBed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF371ZRY 3025829 ENCODE Processing Pipeline 564cc62673829b568cc84310aeb14935 https://www.encodeproject.org/files/ENCFF314BKL/@@download/ENCFF314BKL.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF152RRO bigWig signal p-value ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF594EIM 445861778 ENCODE Processing Pipeline a3d71e976bae3932bd3dc4a040ac5a2f https://www.encodeproject.org/files/ENCFF152RRO/@@download/ENCFF152RRO.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF473NDJ bigWig signal p-value ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF567DRW, ENCFF594EIM 785220874 ENCODE Processing Pipeline 04233991a9e4826964e93b816ab4e1cf https://www.encodeproject.org/files/ENCFF473NDJ/@@download/ENCFF473NDJ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF426HJB bigWig fold change over control ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF567DRW 680835775 ENCODE Processing Pipeline 25d3cd067331234f4064d56308bb7f3d https://www.encodeproject.org/files/ENCFF426HJB/@@download/ENCFF426HJB.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF528TTR bigWig fold change over control ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF594EIM 488566271 ENCODE Processing Pipeline 24bd1a6968d2b2dfa8a84819739ed375 https://www.encodeproject.org/files/ENCFF528TTR/@@download/ENCFF528TTR.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF149QRK bigWig fold change over control ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF567DRW, ENCFF594EIM 960479601 ENCODE Processing Pipeline f2301988d90159ba79e8be09a226f783 https://www.encodeproject.org/files/ENCFF149QRK/@@download/ENCFF149QRK.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF834HZG bed narrowPeak replicated peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF371ZRY, ENCFF620XSX, ENCFF638DHB 1066539 ENCODE Processing Pipeline 5065fb03f3f527356bdf9193a946b84b https://www.encodeproject.org/files/ENCFF834HZG/@@download/ENCFF834HZG.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF194HLN bigBed narrowPeak replicated peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF834HZG 2411656 ENCODE Processing Pipeline b38a7b294563cc6a5c26d81a558eae23 https://www.encodeproject.org/files/ENCFF194HLN/@@download/ENCFF194HLN.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF590EBU bam unfiltered alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF523TDL 2467120691 ENCODE Processing Pipeline 2fad2a6435e130787aa692d0e50211fb https://www.encodeproject.org/files/ENCFF590EBU/@@download/ENCFF590EBU.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF659ZZV bam unfiltered alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF817WRW 2584492617 ENCODE Processing Pipeline aff1122426bac396a4150230858d6c0a https://www.encodeproject.org/files/ENCFF659ZZV/@@download/ENCFF659ZZV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF191QNB bam alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF523TDL 1730129247 ENCODE Processing Pipeline 2ecf2a8217495f3efdc6ec9bdeaeaddd https://www.encodeproject.org/files/ENCFF191QNB/@@download/ENCFF191QNB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF786VTB bam alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF817WRW 1467280796 ENCODE Processing Pipeline 386fc06d6bfe76d6dd630d1ad5dc73f3 https://www.encodeproject.org/files/ENCFF786VTB/@@download/ENCFF786VTB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF523LSI bed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF191QNB, ENCFF956XFI 952569 ENCODE Processing Pipeline 0c482af7f541a5ee91479d04bc4c57d0 https://www.encodeproject.org/files/ENCFF523LSI/@@download/ENCFF523LSI.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF110DIV bed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF786VTB, ENCFF837CRH 925932 ENCODE Processing Pipeline 1cd93c80e95ca20ec4f5e54cace3cf42 https://www.encodeproject.org/files/ENCFF110DIV/@@download/ENCFF110DIV.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF877HJS bed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF191QNB, ENCFF786VTB, ENCFF837CRH, ENCFF956XFI 1027106 ENCODE Processing Pipeline fe7ebdbf060aa4ad57cd560fd8e8753f https://www.encodeproject.org/files/ENCFF877HJS/@@download/ENCFF877HJS.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF290FTG bigBed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF523LSI 2927068 ENCODE Processing Pipeline 9b7dbb102cecfad2fea4cbe62e6986fd https://www.encodeproject.org/files/ENCFF290FTG/@@download/ENCFF290FTG.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF877IGT bigBed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF877HJS 3086311 ENCODE Processing Pipeline e29649872b83846cefcbe634f282f1c4 https://www.encodeproject.org/files/ENCFF877IGT/@@download/ENCFF877IGT.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF813OAP bigBed narrowPeak peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF110DIV 2848334 ENCODE Processing Pipeline 7b56978d77adb617754d8368ad46ad67 https://www.encodeproject.org/files/ENCFF813OAP/@@download/ENCFF813OAP.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF130ORC bigWig signal p-value ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF191QNB, ENCFF956XFI 581917620 ENCODE Processing Pipeline be4c753aee3a386eaefc386cf98a4ba5 https://www.encodeproject.org/files/ENCFF130ORC/@@download/ENCFF130ORC.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF157TDX bigWig signal p-value ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF786VTB, ENCFF837CRH 598267294 ENCODE Processing Pipeline 2e9a19cfca2cdd5e922d676677077adc https://www.encodeproject.org/files/ENCFF157TDX/@@download/ENCFF157TDX.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF848SBT bigWig signal p-value ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF191QNB, ENCFF786VTB, ENCFF837CRH, ENCFF956XFI 992217695 ENCODE Processing Pipeline 8eff654ac54fa5505656da9fe2fed157 https://www.encodeproject.org/files/ENCFF848SBT/@@download/ENCFF848SBT.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF709GZR bigWig fold change over control ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF191QNB, ENCFF956XFI 631507706 ENCODE Processing Pipeline 256358c87e9661242bf9ce8a6eebb348 https://www.encodeproject.org/files/ENCFF709GZR/@@download/ENCFF709GZR.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF473JKM bigWig fold change over control ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF786VTB, ENCFF837CRH 549545866 ENCODE Processing Pipeline 3e40bdc49d81ab87368442b8747d2a8f https://www.encodeproject.org/files/ENCFF473JKM/@@download/ENCFF473JKM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF849CQA bigWig fold change over control ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF191QNB, ENCFF786VTB, ENCFF837CRH, ENCFF956XFI 1186927420 ENCODE Processing Pipeline faa008cffd2fd8908bd66d79770ef344 https://www.encodeproject.org/files/ENCFF849CQA/@@download/ENCFF849CQA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF441UQS bed narrowPeak replicated peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF110DIV, ENCFF523LSI, ENCFF877HJS 1103036 ENCODE Processing Pipeline e43a7d92278167e4ee334e49da74c8ed https://www.encodeproject.org/files/ENCFF441UQS/@@download/ENCFF441UQS.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF085CZC bigBed narrowPeak replicated peaks ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF441UQS 2452067 ENCODE Processing Pipeline 9e78e4c6b92c2f057a074ed028c4cdd0 https://www.encodeproject.org/files/ENCFF085CZC/@@download/ENCFF085CZC.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF436USY bam alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF511SEB, ENCFF806JSP, ENCFF806TVZ 2826255360 ENCODE Processing Pipeline 1f4d5b59de5089938f8bfba53bbb7fa3 https://www.encodeproject.org/files/ENCFF436USY/@@download/ENCFF436USY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF227IIG bam alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF003PIT, ENCFF661URL, ENCFF806TVZ 2897670726 ENCODE Processing Pipeline cf3b21cb5e3bb307cd91f327c7e039c9 https://www.encodeproject.org/files/ENCFF227IIG/@@download/ENCFF227IIG.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF661URL fastq reads ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2702073731 Bing Ren, UCSD 03052a815251e195f89bfcd73f80a824 SRA:SRR3652603 https://www.encodeproject.org/files/ENCFF661URL/@@download/ENCFF661URL.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF511SEB fastq reads ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3078743201 Bing Ren, UCSD 16878afaeae409131c0df3bdc67080b1 SRA:SRR3652601 https://www.encodeproject.org/files/ENCFF511SEB/@@download/ENCFF511SEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF806JSP fastq reads ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 985337541 Bing Ren, UCSD 4ba8d4539fe4ce365906e8329be2485b SRA:SRR3652602 https://www.encodeproject.org/files/ENCFF806JSP/@@download/ENCFF806JSP.fastq.gz Illumina HiSeq 2500 /files/ENCFF515ALU/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF003PIT fastq reads ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 1916916446 Bing Ren, UCSD 201e0d52250cd19fc356307d8fe640af SRA:SRR3652604 https://www.encodeproject.org/files/ENCFF003PIT/@@download/ENCFF003PIT.fastq.gz Illumina HiSeq 2500 /files/ENCFF246LOG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF626HMG bigBed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF471AGY 6889639 ENCODE Processing Pipeline d7ea9edfcc1cb621fb1d21e678d018f5 https://www.encodeproject.org/files/ENCFF626HMG/@@download/ENCFF626HMG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF009KJV bed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF269MZC, ENCFF436USY 3224597 ENCODE Processing Pipeline b139fe456e5dcf1f7a8f882c6b2b8444 https://www.encodeproject.org/files/ENCFF009KJV/@@download/ENCFF009KJV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF910RPQ bed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF170XAR, ENCFF227IIG, ENCFF269MZC, ENCFF436USY 2854554 ENCODE Processing Pipeline 51bce72a2794464bbafa031a968126fe https://www.encodeproject.org/files/ENCFF910RPQ/@@download/ENCFF910RPQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF942KVH bigBed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF910RPQ 6095219 ENCODE Processing Pipeline c33b70214afba6a070f5793f3310a9bf https://www.encodeproject.org/files/ENCFF942KVH/@@download/ENCFF942KVH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF471AGY bed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF227IIG, ENCFF269MZC 3188995 ENCODE Processing Pipeline db6a92bb11d3b8b7e358ae2c3825d505 https://www.encodeproject.org/files/ENCFF471AGY/@@download/ENCFF471AGY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF093KQE bigBed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF009KJV 6880951 ENCODE Processing Pipeline 5a1e7d0d8409286296ba57463e626691 https://www.encodeproject.org/files/ENCFF093KQE/@@download/ENCFF093KQE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF916IWL bigWig signal p-value ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF227IIG, ENCFF269MZC 720609022 ENCODE Processing Pipeline e3ed1cbb7ba5f019093b2601fd83080f https://www.encodeproject.org/files/ENCFF916IWL/@@download/ENCFF916IWL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF092OQG bigWig signal p-value ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF269MZC, ENCFF436USY 716136035 ENCODE Processing Pipeline 33cc32bcb4d44f8d2f8becb78fafb6be https://www.encodeproject.org/files/ENCFF092OQG/@@download/ENCFF092OQG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF972APR bigWig signal p-value ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF170XAR, ENCFF227IIG, ENCFF269MZC, ENCFF436USY 1161446408 ENCODE Processing Pipeline 15354a40a589726892696076b369baf1 https://www.encodeproject.org/files/ENCFF972APR/@@download/ENCFF972APR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF145QYL bigWig fold change over control ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF227IIG, ENCFF269MZC 1006039682 ENCODE Processing Pipeline 8af5cbc8e45565ef59933b3f0e2e0429 https://www.encodeproject.org/files/ENCFF145QYL/@@download/ENCFF145QYL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF644CGI bigWig fold change over control ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF170XAR, ENCFF269MZC, ENCFF436USY 993878231 ENCODE Processing Pipeline 26638eb9f430a0053b946487d0d91165 https://www.encodeproject.org/files/ENCFF644CGI/@@download/ENCFF644CGI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF476RAO bigBed narrowPeak replicated peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF703XMM 5197776 ENCODE Processing Pipeline 8d7e4f7a780c4ccb2fd5bf4c2d7d898c https://www.encodeproject.org/files/ENCFF476RAO/@@download/ENCFF476RAO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF627FFX bigWig fold change over control ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF170XAR, ENCFF227IIG, ENCFF269MZC, ENCFF436USY 1541387324 ENCODE Processing Pipeline e234f71efa9818ebb15362d5cc732586 https://www.encodeproject.org/files/ENCFF627FFX/@@download/ENCFF627FFX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF703XMM bed narrowPeak replicated peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF009KJV, ENCFF471AGY, ENCFF910RPQ 3010488 ENCODE Processing Pipeline ef71efa8e59b28fe093a86247060b776 https://www.encodeproject.org/files/ENCFF703XMM/@@download/ENCFF703XMM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF023ESY bam unfiltered alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF511SEB, ENCFF806JSP 4718183870 ENCODE Processing Pipeline 787c68a9f9829a7a5c21776cd0a922e4 https://www.encodeproject.org/files/ENCFF023ESY/@@download/ENCFF023ESY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF246NED bam unfiltered alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF003PIT, ENCFF018NEO, ENCFF661URL 5314296967 ENCODE Processing Pipeline 7d416bc8bc8aff4f40ca4f9e410a0fa6 https://www.encodeproject.org/files/ENCFF246NED/@@download/ENCFF246NED.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF670ISA bam alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF511SEB, ENCFF806JSP 2825646565 ENCODE Processing Pipeline a56c697df3d75eeb064bb67db7ea824c https://www.encodeproject.org/files/ENCFF670ISA/@@download/ENCFF670ISA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF184WXX bam alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF003PIT, ENCFF018NEO, ENCFF661URL 2896990558 ENCODE Processing Pipeline 0f5e8825794232fb07408396d6d7e772 https://www.encodeproject.org/files/ENCFF184WXX/@@download/ENCFF184WXX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF665ZPT bed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF184WXX, ENCFF200JPL, ENCFF876QJH 3231892 ENCODE Processing Pipeline d6dc4df4f4a691862e1f2ec0cdf56508 https://www.encodeproject.org/files/ENCFF665ZPT/@@download/ENCFF665ZPT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF710VIB bed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF670ISA 2952347 ENCODE Processing Pipeline ce622e518727d8f8921bf2de189ca9a1 https://www.encodeproject.org/files/ENCFF710VIB/@@download/ENCFF710VIB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF235GLT bed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF184WXX, ENCFF200JPL, ENCFF670ISA, ENCFF876QJH 3247382 ENCODE Processing Pipeline 9305bf195685aff5bf03d92e4832492e https://www.encodeproject.org/files/ENCFF235GLT/@@download/ENCFF235GLT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF662NPD bigBed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF665ZPT 6942914 ENCODE Processing Pipeline a0e32b87c48f331006ec1de2805d95e3 https://www.encodeproject.org/files/ENCFF662NPD/@@download/ENCFF662NPD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF827NUZ bigBed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF710VIB 6287431 ENCODE Processing Pipeline 98cb04bcd70dc49602db4d88c6c0f659 https://www.encodeproject.org/files/ENCFF827NUZ/@@download/ENCFF827NUZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF551FWO bigBed narrowPeak peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF235GLT 6902948 ENCODE Processing Pipeline a084eae2d24a5e2ed8e8b28eeb8bb8cb https://www.encodeproject.org/files/ENCFF551FWO/@@download/ENCFF551FWO.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF915WSE bigWig signal p-value ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF184WXX, ENCFF200JPL, ENCFF876QJH 1076455261 ENCODE Processing Pipeline b05b29febb3ca9990a6931bdb8fc88a1 https://www.encodeproject.org/files/ENCFF915WSE/@@download/ENCFF915WSE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF055SKM bigWig signal p-value ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF670ISA 832723985 ENCODE Processing Pipeline 8b67c1cae0ba4933ad4f6eee3010cff9 https://www.encodeproject.org/files/ENCFF055SKM/@@download/ENCFF055SKM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF499QQY bigWig signal p-value ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF184WXX, ENCFF200JPL, ENCFF670ISA, ENCFF876QJH 1484138747 ENCODE Processing Pipeline 57be02e6e2ced9d372e8798bb7c87341 https://www.encodeproject.org/files/ENCFF499QQY/@@download/ENCFF499QQY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF289IRK bigWig fold change over control ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF184WXX, ENCFF200JPL, ENCFF876QJH 1071776842 ENCODE Processing Pipeline 51b599f4281cd3588f94009675ccc7e0 https://www.encodeproject.org/files/ENCFF289IRK/@@download/ENCFF289IRK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF430NYG bigWig fold change over control ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF670ISA 890953892 ENCODE Processing Pipeline 25c6e416a7ded8d67cf8f0e825fbe863 https://www.encodeproject.org/files/ENCFF430NYG/@@download/ENCFF430NYG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF769VJF bigWig fold change over control ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF184WXX, ENCFF200JPL, ENCFF670ISA, ENCFF876QJH 1581117130 ENCODE Processing Pipeline af95e49a67a08bb3b69e04aa4d421408 https://www.encodeproject.org/files/ENCFF769VJF/@@download/ENCFF769VJF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF425VLJ bed narrowPeak replicated peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF235GLT, ENCFF665ZPT, ENCFF710VIB 2791144 ENCODE Processing Pipeline 281fc51a3219fa26c045bfcaa85142e7 https://www.encodeproject.org/files/ENCFF425VLJ/@@download/ENCFF425VLJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF376WBG bigBed narrowPeak replicated peaks ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF425VLJ 4761810 ENCODE Processing Pipeline f5e28eccf82e2f448e3c999b66ba8e19 https://www.encodeproject.org/files/ENCFF376WBG/@@download/ENCFF376WBG.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF261ZMN fastq reads ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 1222982963 Christina Leslie, MSKCC 1b7ff61163d52b84df68aff5b0f97955 https://www.encodeproject.org/files/ENCFF261ZMN/@@download/ENCFF261ZMN.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF827UAJ fastq reads ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 1422367941 Christina Leslie, MSKCC af74a06db7564d27ad5f71847a85c592 https://www.encodeproject.org/files/ENCFF827UAJ/@@download/ENCFF827UAJ.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF017QIZ bam alignments ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF261ZMN 820407858 Christina Leslie, MSKCC 93877949d715dbdb7bdeb2bcf47341c4 https://www.encodeproject.org/files/ENCFF017QIZ/@@download/ENCFF017QIZ.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF044SBD bam alignments ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF827UAJ 912028349 Christina Leslie, MSKCC 3595716382046c554fa2eb049490e71f https://www.encodeproject.org/files/ENCFF044SBD/@@download/ENCFF044SBD.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF606ZZL tsv enrichment ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF044SBD, ENCFF608UQC 275677 Christina Leslie, MSKCC 2d3c46a0b17bc9bef24a127f70ea4ff2 https://www.encodeproject.org/files/ENCFF606ZZL/@@download/ENCFF606ZZL.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF918CHM tsv enrichment ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF017QIZ, ENCFF608UQC 274134 Christina Leslie, MSKCC 8d2262fa05f10acdf80930ee67843e5e https://www.encodeproject.org/files/ENCFF918CHM/@@download/ENCFF918CHM.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF002ANN fastq reads ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1369516085 Bing Ren, UCSD c6a1874e41fd435794fea8f98eab31f6 SRA:SRR3652188 https://www.encodeproject.org/files/ENCFF002ANN/@@download/ENCFF002ANN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQX/ released low read length, inconsistent control read length ENCFF002ANQ fastq reads ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 2332170039 Bing Ren, UCSD c326e17f97845686349b34d2e82f74b9 SRA:SRR3652189 https://www.encodeproject.org/files/ENCFF002ANQ/@@download/ENCFF002ANQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQT/ released low read length, inconsistent control read length ENCFF184EKV bam alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANQ, ENCFF806TVZ 1506425156 ENCODE Processing Pipeline 209496c48c7e02c1bf372e67da0ec9cd https://www.encodeproject.org/files/ENCFF184EKV/@@download/ENCFF184EKV.bam mm10-minimal archived low read length ENCFF037NNY bam alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANN, ENCFF806TVZ 890609943 ENCODE Processing Pipeline eeca0b7e04c6be0fc2a4ce5c783128e1 https://www.encodeproject.org/files/ENCFF037NNY/@@download/ENCFF037NNY.bam mm10-minimal archived low read length ENCFF345JAU bed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF037NNY, ENCFF431MET 488971 ENCODE Processing Pipeline 2bff154fcee0d2757c32588b3cd1da0e https://www.encodeproject.org/files/ENCFF345JAU/@@download/ENCFF345JAU.bed.gz mm10-minimal archived low read length ENCFF216PSS bed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF184EKV, ENCFF431MET 519474 ENCODE Processing Pipeline 2ab4c98af0e09bdcd9c27a30ee375388 https://www.encodeproject.org/files/ENCFF216PSS/@@download/ENCFF216PSS.bed.gz mm10-minimal archived low read length ENCFF656KQW bed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF037NNY, ENCFF184EKV, ENCFF431MET 536148 ENCODE Processing Pipeline 2b728c3a88afa07ea7bec4819508aa90 https://www.encodeproject.org/files/ENCFF656KQW/@@download/ENCFF656KQW.bed.gz mm10-minimal archived low read length ENCFF320LLK bigBed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF656KQW 1767620 ENCODE Processing Pipeline 9b3c0cadf2d292cf4ea2992594473d1a https://www.encodeproject.org/files/ENCFF320LLK/@@download/ENCFF320LLK.bigBed mm10-minimal archived low read length ENCFF933JVE bigBed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF216PSS 1730647 ENCODE Processing Pipeline c4c84f294854db0e14945714a2c634ce https://www.encodeproject.org/files/ENCFF933JVE/@@download/ENCFF933JVE.bigBed mm10-minimal archived low read length ENCFF440PAL bigBed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF345JAU 1656026 ENCODE Processing Pipeline a27a641ded90c505c9c2cfd76e0d7555 https://www.encodeproject.org/files/ENCFF440PAL/@@download/ENCFF440PAL.bigBed mm10-minimal archived low read length ENCFF160IXU bigWig signal p-value ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF184EKV, ENCFF431MET 578246253 ENCODE Processing Pipeline 8e9e775dfa13684ed7e6f8c96e79acc7 https://www.encodeproject.org/files/ENCFF160IXU/@@download/ENCFF160IXU.bigWig mm10-minimal archived low read length ENCFF974LQZ bigWig signal p-value ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF037NNY, ENCFF431MET 448460306 ENCODE Processing Pipeline 68e7a42dd00bcc099d4846b10959011b https://www.encodeproject.org/files/ENCFF974LQZ/@@download/ENCFF974LQZ.bigWig mm10-minimal archived low read length ENCFF500ADL bigWig signal p-value ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF037NNY, ENCFF184EKV, ENCFF431MET 811902632 ENCODE Processing Pipeline 201d711d39d92f59dca35a31a41861c8 https://www.encodeproject.org/files/ENCFF500ADL/@@download/ENCFF500ADL.bigWig mm10-minimal archived low read length ENCFF976RZU bigWig fold change over control ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF184EKV, ENCFF431MET 628478738 ENCODE Processing Pipeline 7c2f8d2d9f59060e7bfcacc9c7dbc671 https://www.encodeproject.org/files/ENCFF976RZU/@@download/ENCFF976RZU.bigWig mm10-minimal archived low read length ENCFF190VDV bigWig fold change over control ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF037NNY, ENCFF431MET 439962421 ENCODE Processing Pipeline d08fc5bd396d62c6f96b07c9dbd232e5 https://www.encodeproject.org/files/ENCFF190VDV/@@download/ENCFF190VDV.bigWig mm10-minimal archived low read length ENCFF917FJZ bigWig fold change over control ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF037NNY, ENCFF184EKV, ENCFF431MET 828334687 ENCODE Processing Pipeline 40e711aecb1d4282c57e55eeec7aeae6 https://www.encodeproject.org/files/ENCFF917FJZ/@@download/ENCFF917FJZ.bigWig mm10-minimal archived low read length ENCFF927WXN bigBed narrowPeak replicated peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF876JPZ 1537165 ENCODE Processing Pipeline 8d7d29d1e6f5d4140b509c7ad31e21f7 https://www.encodeproject.org/files/ENCFF927WXN/@@download/ENCFF927WXN.bigBed mm10-minimal archived low read length ENCFF876JPZ bed narrowPeak replicated peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF216PSS, ENCFF345JAU, ENCFF656KQW 613276 ENCODE Processing Pipeline 113dfac8ec22094d098cfa1f605a1f70 https://www.encodeproject.org/files/ENCFF876JPZ/@@download/ENCFF876JPZ.bed.gz mm10-minimal archived low read length ENCFF636BRQ bam unfiltered alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANN, ENCFF018NEO 1404467429 ENCODE Processing Pipeline 8a0e2a740a2867d5bb581ad3b97a5c32 https://www.encodeproject.org/files/ENCFF636BRQ/@@download/ENCFF636BRQ.bam mm10 released low read length ENCFF355AXB bam unfiltered alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANQ, ENCFF018NEO 2382115341 ENCODE Processing Pipeline bb56f47054dda5d07d64a6b5178932c3 https://www.encodeproject.org/files/ENCFF355AXB/@@download/ENCFF355AXB.bam mm10 released low read length ENCFF625QPV bam alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANN, ENCFF018NEO 890361578 ENCODE Processing Pipeline 136a183a07fce425518645afbc281510 https://www.encodeproject.org/files/ENCFF625QPV/@@download/ENCFF625QPV.bam mm10 released low read length ENCFF656DDK bam alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANQ, ENCFF018NEO 1505994497 ENCODE Processing Pipeline 53acd4199a381aadc05012acaee3803b https://www.encodeproject.org/files/ENCFF656DDK/@@download/ENCFF656DDK.bam mm10 released low read length ENCFF795PYK bed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF625QPV 497720 ENCODE Processing Pipeline 33eaa9e78f3fc5456398abbac90e0fc2 https://www.encodeproject.org/files/ENCFF795PYK/@@download/ENCFF795PYK.bed.gz mm10 released low read length ENCFF297COU bigBed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF789CKM 1718311 ENCODE Processing Pipeline da8d4d35485fcefdcd33628d1d302fa7 https://www.encodeproject.org/files/ENCFF297COU/@@download/ENCFF297COU.bigBed mm10 released low read length ENCFF969FVJ bigBed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF869OWV 1692901 ENCODE Processing Pipeline 838848b2ff37f8b414fccdbfa11856ce https://www.encodeproject.org/files/ENCFF969FVJ/@@download/ENCFF969FVJ.bigBed mm10 released low read length ENCFF789CKM bed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF656DDK 514782 ENCODE Processing Pipeline 8661e3dbced12ef97b2e027cc251b31b https://www.encodeproject.org/files/ENCFF789CKM/@@download/ENCFF789CKM.bed.gz mm10 released low read length ENCFF869OWV bed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF517WIG, ENCFF625QPV, ENCFF656DDK 513693 ENCODE Processing Pipeline aeed85a90d8d250749fa6f635a4038bf https://www.encodeproject.org/files/ENCFF869OWV/@@download/ENCFF869OWV.bed.gz mm10 released low read length ENCFF095FDN bigWig signal p-value ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF656DDK 627286871 ENCODE Processing Pipeline 314280df20694e128b980bb42693461f https://www.encodeproject.org/files/ENCFF095FDN/@@download/ENCFF095FDN.bigWig mm10 released low read length ENCFF786GNE bigBed narrowPeak peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF795PYK 1685141 ENCODE Processing Pipeline 5d431e774793fc3399e8b30ca63d5029 https://www.encodeproject.org/files/ENCFF786GNE/@@download/ENCFF786GNE.bigBed mm10 released low read length ENCFF114DAW bigWig signal p-value ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF625QPV 514091905 ENCODE Processing Pipeline 54c2f2f806b731ad627ffef323739598 https://www.encodeproject.org/files/ENCFF114DAW/@@download/ENCFF114DAW.bigWig mm10 released low read length ENCFF588XIA bigWig signal p-value ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF517WIG, ENCFF625QPV, ENCFF656DDK 842316832 ENCODE Processing Pipeline a2bcef982d02b8a92add59542dbb4971 https://www.encodeproject.org/files/ENCFF588XIA/@@download/ENCFF588XIA.bigWig mm10 released low read length ENCFF421HTD bigWig fold change over control ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF656DDK 692439338 ENCODE Processing Pipeline 3ac9c4fa6ab33cf88a71068e6da3c3de https://www.encodeproject.org/files/ENCFF421HTD/@@download/ENCFF421HTD.bigWig mm10 released low read length ENCFF217VIY bigWig fold change over control ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF625QPV 485194777 ENCODE Processing Pipeline 592854e56849d48311692dcb2fe4f537 https://www.encodeproject.org/files/ENCFF217VIY/@@download/ENCFF217VIY.bigWig mm10 released low read length ENCFF669USU bigWig fold change over control ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF517WIG, ENCFF625QPV, ENCFF656DDK 860604853 ENCODE Processing Pipeline be672beea557db6d7042cd7a36a08293 https://www.encodeproject.org/files/ENCFF669USU/@@download/ENCFF669USU.bigWig mm10 released low read length ENCFF608PDA bed narrowPeak replicated peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF789CKM, ENCFF795PYK, ENCFF869OWV 627104 ENCODE Processing Pipeline a2b5c8e1eb5465bd5181c8222ec41b03 https://www.encodeproject.org/files/ENCFF608PDA/@@download/ENCFF608PDA.bed.gz mm10 released low read length ENCFF169RNW bigBed narrowPeak replicated peaks ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF608PDA 1547266 ENCODE Processing Pipeline 0b1a6817789f3878aca355558bfaecd2 https://www.encodeproject.org/files/ENCFF169RNW/@@download/ENCFF169RNW.bigBed mm10 released low read length ENCFF001MQU bam alignments ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRC 1622958631 Ross Hardison, PennState b612c0c8f6809bd4c37a2579588e7982 https://www.encodeproject.org/files/ENCFF001MQU/@@download/ENCFF001MQU.bam mm9 released low read length insufficient read depth for broad peaks control ENCFF001MQV bigWig signal ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 2667622796 Ross Hardison, PennState 701b63d566d155675061e350427e0813 https://www.encodeproject.org/files/ENCFF001MQV/@@download/ENCFF001MQV.bigWig mm9 released low read length missing derived_from, insufficient read depth for broad peaks control ENCFF001MRC fastq reads ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 48 single-ended 1321661181 Ross Hardison, PennState e3f9fdc06c7843426c2b33b2e1206ac8 https://www.encodeproject.org/files/ENCFF001MRC/@@download/ENCFF001MRC.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF359SJP bam unfiltered alignments ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRC, ENCFF806TVZ 1710951030 J. Michael Cherry, Stanford 397d8ed52b49f218e5f204638627631c https://www.encodeproject.org/files/ENCFF359SJP/@@download/ENCFF359SJP.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF168PUJ bam alignments ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRC, ENCFF806TVZ 1261203251 J. Michael Cherry, Stanford 226b81e6df23838c2d2edec13b83e099 https://www.encodeproject.org/files/ENCFF168PUJ/@@download/ENCFF168PUJ.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF569KHV bam unfiltered alignments ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MRC, ENCFF018NEO 1712540270 ENCODE Processing Pipeline b715a426b1acb0d40975566814e27ee9 https://www.encodeproject.org/files/ENCFF569KHV/@@download/ENCFF569KHV.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF050IRU bam alignments ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MRC, ENCFF018NEO 1260676154 ENCODE Processing Pipeline cedf9310886ead1f1a141fc36ebba8ed https://www.encodeproject.org/files/ENCFF050IRU/@@download/ENCFF050IRU.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF915WNP fastq reads ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 1838695558 Christina Leslie, MSKCC 537bbab0a86fbf9161b067ab0edd7fef https://www.encodeproject.org/files/ENCFF915WNP/@@download/ENCFF915WNP.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF513FNP fastq reads ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 1639141564 Christina Leslie, MSKCC 11eff386fdf0224c2ffdf4f0f0738c2e https://www.encodeproject.org/files/ENCFF513FNP/@@download/ENCFF513FNP.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF576SVA bam alignments ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF513FNP 1077057777 Christina Leslie, MSKCC 8551c54990441657f30a796a2f6a4c2e https://www.encodeproject.org/files/ENCFF576SVA/@@download/ENCFF576SVA.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF671APU bam alignments ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF915WNP 1187486645 Christina Leslie, MSKCC 0480db70f48e81380ff93fb25dbabce7 https://www.encodeproject.org/files/ENCFF671APU/@@download/ENCFF671APU.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF006PQO tsv enrichment ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF576SVA, ENCFF608UQC 278000 Christina Leslie, MSKCC fec3e05cc4cda6b9ef4f50f44050dd45 https://www.encodeproject.org/files/ENCFF006PQO/@@download/ENCFF006PQO.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF620HDJ tsv enrichment ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF608UQC, ENCFF671APU 279426 Christina Leslie, MSKCC 433c5c1d359946d383f4b2a9c1433a15 https://www.encodeproject.org/files/ENCFF620HDJ/@@download/ENCFF620HDJ.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF002ARI fastq reads ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1049445335 Bing Ren, UCSD 68100c7c48a6aea36c02c0e86497e307 SRA:SRR3651259 https://www.encodeproject.org/files/ENCFF002ARI/@@download/ENCFF002ARI.fastq.gz Illumina HiSeq 2000 released low read length, low read depth ENCFF002ARL fastq reads ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 935079262 Bing Ren, UCSD d3c0797354a0add58fef3be5e0fc496b SRA:SRR3651260 https://www.encodeproject.org/files/ENCFF002ARL/@@download/ENCFF002ARL.fastq.gz Illumina HiSeq 2000 released low read length, low read depth ENCFF063FBV bam unfiltered alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARL, ENCFF806TVZ 1025479507 ENCODE Processing Pipeline d1c639bc7b0318aa6e101aa96fd51048 https://www.encodeproject.org/files/ENCFF063FBV/@@download/ENCFF063FBV.bam mm10-minimal archived low read length, low read depth ENCFF467YBH bam unfiltered alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARI, ENCFF806TVZ 1155773708 ENCODE Processing Pipeline 50a7c712de205a899909f0f2eb28ee29 https://www.encodeproject.org/files/ENCFF467YBH/@@download/ENCFF467YBH.bam mm10-minimal archived low read length, low read depth ENCFF006YKR bam alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARI, ENCFF806TVZ 769838231 ENCODE Processing Pipeline 2dcc4e8e012edf35635d453ce51386e1 https://www.encodeproject.org/files/ENCFF006YKR/@@download/ENCFF006YKR.bam mm10-minimal archived low read length, low read depth ENCFF946XCS bam alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARL, ENCFF806TVZ 657457914 ENCODE Processing Pipeline 4ea3def73176fae2ef9e9fd4b6480a74 https://www.encodeproject.org/files/ENCFF946XCS/@@download/ENCFF946XCS.bam mm10-minimal archived low read length, low read depth ENCFF757FFO bam unfiltered alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARI, ENCFF018NEO 1157395010 ENCODE Processing Pipeline 35cc84918c4cafdf91621294883258a2 https://www.encodeproject.org/files/ENCFF757FFO/@@download/ENCFF757FFO.bam mm10 released low read length, low read depth ENCFF436AXU bam unfiltered alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARL, ENCFF018NEO 1027032431 ENCODE Processing Pipeline 921955cd3196f8bc604975bcc737c34c https://www.encodeproject.org/files/ENCFF436AXU/@@download/ENCFF436AXU.bam mm10 released low read length, low read depth ENCFF482UTL bam alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARL, ENCFF018NEO 657252150 ENCODE Processing Pipeline 33c3720072c9a0b7ef0fbf2c988f5dda https://www.encodeproject.org/files/ENCFF482UTL/@@download/ENCFF482UTL.bam mm10 released low read length, low read depth ENCFF292SSW bam alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARI, ENCFF018NEO 769632160 ENCODE Processing Pipeline 61569bd3d5b6128ed3239b29d182f99d https://www.encodeproject.org/files/ENCFF292SSW/@@download/ENCFF292SSW.bam mm10 released low read length, low read depth ENCFF002AQT fastq reads ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1461537579 Bing Ren, UCSD 118641a97ad8cdaaff4f38fe9e95e92c SRA:SRR3651278 https://www.encodeproject.org/files/ENCFF002AQT/@@download/ENCFF002AQT.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF002AQX fastq reads ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2462217703 Bing Ren, UCSD 0a46fb9219b77a74246ffe3238f1bb9d SRA:SRR3651277 https://www.encodeproject.org/files/ENCFF002AQX/@@download/ENCFF002AQX.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF775SAQ bam unfiltered alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQX, ENCFF806TVZ 2780855832 ENCODE Processing Pipeline 44b256fc91b9c18d2abbdd84be433596 https://www.encodeproject.org/files/ENCFF775SAQ/@@download/ENCFF775SAQ.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF446NKD bam unfiltered alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQT, ENCFF806TVZ 1678445703 ENCODE Processing Pipeline 58b9c0282bf654f6e28033a6a7e70026 https://www.encodeproject.org/files/ENCFF446NKD/@@download/ENCFF446NKD.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF036DBQ bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQX, ENCFF806TVZ 1900271614 ENCODE Processing Pipeline 182495b2fff920eda66990dd73e4ddb3 https://www.encodeproject.org/files/ENCFF036DBQ/@@download/ENCFF036DBQ.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF431MET bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQT, ENCFF806TVZ 1201280310 ENCODE Processing Pipeline 4f4574cb7b167f0f18892affe816f534 https://www.encodeproject.org/files/ENCFF431MET/@@download/ENCFF431MET.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF102BNI bam unfiltered alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQX, ENCFF018NEO 2783709130 ENCODE Processing Pipeline cafb76b8d8b1c219931c967b76a4a252 https://www.encodeproject.org/files/ENCFF102BNI/@@download/ENCFF102BNI.bam mm10 released insufficient read depth for broad peaks control ENCFF868TXK bam unfiltered alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQT, ENCFF018NEO 1680553097 ENCODE Processing Pipeline ecb9b64e028ceec09e5593209562aa61 https://www.encodeproject.org/files/ENCFF868TXK/@@download/ENCFF868TXK.bam mm10 released insufficient read depth for broad peaks control ENCFF316JOV bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQT, ENCFF018NEO 1200943085 ENCODE Processing Pipeline 1ca525f4e06b5be00329708747e80c3b https://www.encodeproject.org/files/ENCFF316JOV/@@download/ENCFF316JOV.bam mm10 released insufficient read depth for broad peaks control ENCFF683NKA bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQX, ENCFF018NEO 1899709758 ENCODE Processing Pipeline ef85652daad01e147687e2edebd9aa81 https://www.encodeproject.org/files/ENCFF683NKA/@@download/ENCFF683NKA.bam mm10 released insufficient read depth for broad peaks control ENCFF638AWU bam unfiltered alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQT, ENCFF018NEO 1367353812 ENCODE Processing Pipeline 600b0cfef66d0441802fba7ce059dd38 https://www.encodeproject.org/files/ENCFF638AWU/@@download/ENCFF638AWU.bam mm10 released insufficient read depth for broad peaks control ENCFF217BUO bam unfiltered alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQX, ENCFF018NEO 2260113484 ENCODE Processing Pipeline 3a99497b760e34fe50d24b99c62be431 https://www.encodeproject.org/files/ENCFF217BUO/@@download/ENCFF217BUO.bam mm10 released insufficient read depth for broad peaks control ENCFF088KYO bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQT, ENCFF018NEO 917175119 ENCODE Processing Pipeline a3d109ce5c0648e145eee3dec0a6c1d3 https://www.encodeproject.org/files/ENCFF088KYO/@@download/ENCFF088KYO.bam mm10 released insufficient read depth for broad peaks control ENCFF517WIG bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQX, ENCFF018NEO 1445263880 ENCODE Processing Pipeline 2433da7d17bc35f234367f9efb72852e https://www.encodeproject.org/files/ENCFF517WIG/@@download/ENCFF517WIG.bam mm10 released insufficient read depth for broad peaks control ENCFF001LVQ bigBed broadPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YBT 1011863 Ross Hardison, PennState e87cf8ad7d5932c44a224814c190672f https://www.encodeproject.org/files/ENCFF001LVQ/@@download/ENCFF001LVQ.bigBed mm9 archived inconsistent platforms ENCFF001LVR bam alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LVY 5059845429 Ross Hardison, PennState e480ce164f4329015bab6c2b016e20f6 https://www.encodeproject.org/files/ENCFF001LVR/@@download/ENCFF001LVR.bam mm9 archived inconsistent platforms ENCFF001LVS bam alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LWA 6012852882 Ross Hardison, PennState 6160800b6e7b1c6806a9254451afb062 https://www.encodeproject.org/files/ENCFF001LVS/@@download/ENCFF001LVS.bam mm9 archived inconsistent platforms ENCFF001LVT bigBed broadPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YBU 989445 Ross Hardison, PennState 9bbc19c688453ab9e17bbfd8c45ae885 https://www.encodeproject.org/files/ENCFF001LVT/@@download/ENCFF001LVT.bigBed mm9 archived inconsistent platforms ENCFF001LVU bigBed broadPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YBV 1094671 Ross Hardison, PennState 9fbcca0c3a37d3a6c5deac56e7c5468f https://www.encodeproject.org/files/ENCFF001LVU/@@download/ENCFF001LVU.bigBed mm9 archived inconsistent platforms ENCFF001LVV bigWig signal ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 6003725223 Ross Hardison, PennState 25095ff3e11ca657eb5880bba6394ff0 https://www.encodeproject.org/files/ENCFF001LVV/@@download/ENCFF001LVV.bigWig mm9 archived inconsistent platforms missing derived_from ENCFF001LVX bigWig signal ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5731859926 Ross Hardison, PennState 42403e71e6750308cf9794627636f20b https://www.encodeproject.org/files/ENCFF001LVX/@@download/ENCFF001LVX.bigWig mm9 archived inconsistent platforms missing derived_from ENCFF001LVY fastq reads ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4653645156 Ross Hardison, PennState 7f94062151806c1bde21d5ce5ea075f8 https://www.encodeproject.org/files/ENCFF001LVY/@@download/ENCFF001LVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLY/ released inconsistent platforms ENCFF001LVZ bigWig signal ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 6462553712 Ross Hardison, PennState 6d6f3f2ff91cec090b3748f67166f5ed https://www.encodeproject.org/files/ENCFF001LVZ/@@download/ENCFF001LVZ.bigWig mm9 archived inconsistent platforms missing derived_from ENCFF001LWA fastq reads ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 5385645318 Ross Hardison, PennState f29b6bb6bd41da9463821a980cf4f6e1 https://www.encodeproject.org/files/ENCFF001LWA/@@download/ENCFF001LWA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLS/ released inconsistent platforms, inconsistent control read length ENCFF001YBT bed broadPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 617891 Ross Hardison, PennState 1a69534e5aceb9215e993aacf5532a54 https://www.encodeproject.org/files/ENCFF001YBT/@@download/ENCFF001YBT.bed.gz mm9 archived inconsistent platforms missing derived_from ENCFF001YBU bed broadPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 577748 Ross Hardison, PennState b22e1e7bf814543fb9fafedad1a732e2 https://www.encodeproject.org/files/ENCFF001YBU/@@download/ENCFF001YBU.bed.gz mm9 archived inconsistent platforms missing derived_from ENCFF001YBV bed broadPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 646463 Ross Hardison, PennState 01562b3870caac196b27c6359d638eb8 https://www.encodeproject.org/files/ENCFF001YBV/@@download/ENCFF001YBV.bed.gz mm9 archived inconsistent platforms missing derived_from ENCFF813CTM bam unfiltered alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LWA, ENCFF018NEO 4738310373 ENCODE Processing Pipeline 8a29c8519832854b4e2b2ef006f7946c https://www.encodeproject.org/files/ENCFF813CTM/@@download/ENCFF813CTM.bam mm10 released inconsistent platforms ENCFF411DVQ bam unfiltered alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVY, ENCFF018NEO 4112851272 ENCODE Processing Pipeline f519231170b4680bbdf828a5db6b5820 https://www.encodeproject.org/files/ENCFF411DVQ/@@download/ENCFF411DVQ.bam mm10 released inconsistent platforms ENCFF547NVF bam alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LWA, ENCFF018NEO 2978741953 ENCODE Processing Pipeline df0b1204bc6f8172b8f5c4bad7d2feaf https://www.encodeproject.org/files/ENCFF547NVF/@@download/ENCFF547NVF.bam mm10 released inconsistent platforms ENCFF907JVV bam alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVY, ENCFF018NEO 2995552054 ENCODE Processing Pipeline b0e320fc30e89c4aaa99aa600065fb39 https://www.encodeproject.org/files/ENCFF907JVV/@@download/ENCFF907JVV.bam mm10 released inconsistent platforms ENCFF020SHZ bed narrowPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF547NVF, ENCFF867VYO 2434923 ENCODE Processing Pipeline 74ef457715fdb0530b3ca04222a3869e https://www.encodeproject.org/files/ENCFF020SHZ/@@download/ENCFF020SHZ.bed.gz mm10 released inconsistent platforms ENCFF005RTJ bed narrowPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF867VYO, ENCFF907JVV 3196766 ENCODE Processing Pipeline c63fea66e1d8e027fcb0fc45672c5836 https://www.encodeproject.org/files/ENCFF005RTJ/@@download/ENCFF005RTJ.bed.gz mm10 released inconsistent platforms ENCFF883RKG bigBed narrowPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF934YKV 7761924 ENCODE Processing Pipeline 948026eebf3ff5ff8c690aafbba9267a https://www.encodeproject.org/files/ENCFF883RKG/@@download/ENCFF883RKG.bigBed mm10 released inconsistent platforms ENCFF289JNJ bigBed narrowPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF005RTJ 6820269 ENCODE Processing Pipeline 3d2efe7c24179f37baa2bc3bb2dca945 https://www.encodeproject.org/files/ENCFF289JNJ/@@download/ENCFF289JNJ.bigBed mm10 released inconsistent platforms ENCFF549EEK bigBed narrowPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF020SHZ 5478636 ENCODE Processing Pipeline 344edd0b3188194ba174aaf917b054e2 https://www.encodeproject.org/files/ENCFF549EEK/@@download/ENCFF549EEK.bigBed mm10 released inconsistent platforms ENCFF934YKV bed narrowPeak peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF547NVF, ENCFF867VYO, ENCFF907JVV 3605063 ENCODE Processing Pipeline c014fa7c155462c26cadb26bf1173830 https://www.encodeproject.org/files/ENCFF934YKV/@@download/ENCFF934YKV.bed.gz mm10 released inconsistent platforms ENCFF325KXQ bigWig signal p-value ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF547NVF, ENCFF867VYO 1487683782 ENCODE Processing Pipeline 78d7001c9bf6e27388cf7c3fea3cce02 https://www.encodeproject.org/files/ENCFF325KXQ/@@download/ENCFF325KXQ.bigWig mm10 released inconsistent platforms ENCFF248MAQ bigWig signal p-value ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF867VYO, ENCFF907JVV 1282553722 ENCODE Processing Pipeline 7c3729c5e11c0905c0010d5ad1af1fba https://www.encodeproject.org/files/ENCFF248MAQ/@@download/ENCFF248MAQ.bigWig mm10 released inconsistent platforms ENCFF684AKA bigWig signal p-value ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF547NVF, ENCFF867VYO, ENCFF907JVV 1690547788 ENCODE Processing Pipeline c58fe427ea0c4783a5f6710242b913f3 https://www.encodeproject.org/files/ENCFF684AKA/@@download/ENCFF684AKA.bigWig mm10 released inconsistent platforms ENCFF710WIV bigWig fold change over control ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF547NVF, ENCFF867VYO 1475109928 ENCODE Processing Pipeline 047029679f1aa522bc5505a2358e6bf3 https://www.encodeproject.org/files/ENCFF710WIV/@@download/ENCFF710WIV.bigWig mm10 released inconsistent platforms ENCFF735BHA bigWig fold change over control ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF867VYO, ENCFF907JVV 1407753107 ENCODE Processing Pipeline 07aef8ca32cf4fad75dff51f5e8efded https://www.encodeproject.org/files/ENCFF735BHA/@@download/ENCFF735BHA.bigWig mm10 released inconsistent platforms ENCFF923MXW bigWig fold change over control ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF547NVF, ENCFF867VYO, ENCFF907JVV 1994293946 ENCODE Processing Pipeline da40cce9860b71d58bc27cd1c2a547bb https://www.encodeproject.org/files/ENCFF923MXW/@@download/ENCFF923MXW.bigWig mm10 released inconsistent platforms ENCFF468OJF bigBed narrowPeak replicated peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF786KFS 5406613 ENCODE Processing Pipeline ed7f1babbe96dc8d4ef19402a3e58e16 https://www.encodeproject.org/files/ENCFF468OJF/@@download/ENCFF468OJF.bigBed mm10 released inconsistent platforms ENCFF786KFS bed narrowPeak replicated peaks ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF005RTJ, ENCFF020SHZ, ENCFF934YKV 3355108 ENCODE Processing Pipeline b2a76f83d1563c2653c19dcb83bb7acc https://www.encodeproject.org/files/ENCFF786KFS/@@download/ENCFF786KFS.bed.gz mm10 released inconsistent platforms ENCFF001KWI bam alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KWO 253540396 Bing Ren, UCSD 762c8a00afdb1fe4cec99b95e9a55077 https://www.encodeproject.org/files/ENCFF001KWI/@@download/ENCFF001KWI.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KWJ bigBed broadPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZG 654525 Bing Ren, UCSD 0290eb8ca5c5078327f77f1062d406db https://www.encodeproject.org/files/ENCFF001KWJ/@@download/ENCFF001KWJ.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KWK bam alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KWT 412926725 Bing Ren, UCSD b678fff3b72322631c1c8cbacb773742 https://www.encodeproject.org/files/ENCFF001KWK/@@download/ENCFF001KWK.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KWM bigWig signal ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KWI, ENCFF001KWK 62361676 Bing Ren, UCSD 7ebb8bf5ab1326519054600eaba52cab https://www.encodeproject.org/files/ENCFF001KWM/@@download/ENCFF001KWM.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KWO fastq reads ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 306246705 Bing Ren, UCSD a54417b92c6e28b5cff79c2f479d7e16 https://www.encodeproject.org/files/ENCFF001KWO/@@download/ENCFF001KWO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXE/ released low read length insufficient read depth, control insufficient read depth ENCFF001KWT fastq reads ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 504151889 Bing Ren, UCSD 4096279566b93865c81f3edcfe1ac8ec https://www.encodeproject.org/files/ENCFF001KWT/@@download/ENCFF001KWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length insufficient read depth, control insufficient read depth ENCFF001XZG bed broadPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KWI, ENCFF001KWK 395025 Bing Ren, UCSD 72097de0ad8454bd83ec25f945f6cf59 https://www.encodeproject.org/files/ENCFF001XZG/@@download/ENCFF001XZG.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF213BCP bam unfiltered alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWT, ENCFF018NEO 577131361 ENCODE Processing Pipeline 2fc142b16531ca365ed08b610d5e6373 https://www.encodeproject.org/files/ENCFF213BCP/@@download/ENCFF213BCP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF503GIB bam unfiltered alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWO, ENCFF018NEO 360415275 ENCODE Processing Pipeline 960bb536c3a7c277e9c8b3900383cd03 https://www.encodeproject.org/files/ENCFF503GIB/@@download/ENCFF503GIB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF929VOB bam alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWO, ENCFF018NEO 262337583 ENCODE Processing Pipeline 1eb756223b30adcab1482a8b7745659b https://www.encodeproject.org/files/ENCFF929VOB/@@download/ENCFF929VOB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF751ASR bam alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWT, ENCFF018NEO 410283285 ENCODE Processing Pipeline c5ca0e345201a1162a2fb3b2274f4ef0 https://www.encodeproject.org/files/ENCFF751ASR/@@download/ENCFF751ASR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF501IMJ bigBed narrowPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF137JGK 2905592 ENCODE Processing Pipeline 47c9a1f4023e53e65b932b15d3044355 https://www.encodeproject.org/files/ENCFF501IMJ/@@download/ENCFF501IMJ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF817MJT bed narrowPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF929VOB, ENCFF942MHC 1275516 ENCODE Processing Pipeline 29b7969b9e28e5f799bd58d3e22ac9c2 https://www.encodeproject.org/files/ENCFF817MJT/@@download/ENCFF817MJT.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF302QIV bed narrowPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288QPC, ENCFF751ASR, ENCFF942MHC 1092132 ENCODE Processing Pipeline 2f600980027c82fbed9723342049f3ef https://www.encodeproject.org/files/ENCFF302QIV/@@download/ENCFF302QIV.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF400VGU bigBed narrowPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF817MJT 3107448 ENCODE Processing Pipeline 5b878395e53de7cd6fc4154ef96fa57a https://www.encodeproject.org/files/ENCFF400VGU/@@download/ENCFF400VGU.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF137JGK bed narrowPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288QPC, ENCFF751ASR, ENCFF929VOB, ENCFF942MHC 961927 ENCODE Processing Pipeline 086bc28bd003a60926202060b70f2826 https://www.encodeproject.org/files/ENCFF137JGK/@@download/ENCFF137JGK.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF853YQB bigWig signal p-value ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF929VOB, ENCFF942MHC 196931748 ENCODE Processing Pipeline 6675e8c21c755b8c6f31599986f14369 https://www.encodeproject.org/files/ENCFF853YQB/@@download/ENCFF853YQB.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF631RDI bigBed narrowPeak peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF302QIV 3284682 ENCODE Processing Pipeline affa5fe9929a77c7d9b3993dd741f6e9 https://www.encodeproject.org/files/ENCFF631RDI/@@download/ENCFF631RDI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF605STW bigWig signal p-value ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288QPC, ENCFF751ASR, ENCFF942MHC 198387842 ENCODE Processing Pipeline 0ef54b8cfcf21ae831ad4ceac827c4ed https://www.encodeproject.org/files/ENCFF605STW/@@download/ENCFF605STW.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF699VWN bigWig signal p-value ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288QPC, ENCFF751ASR, ENCFF929VOB, ENCFF942MHC 208657739 ENCODE Processing Pipeline fe11a5e2f19b446864e57119d551a62a https://www.encodeproject.org/files/ENCFF699VWN/@@download/ENCFF699VWN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF901CWG bigWig fold change over control ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288QPC, ENCFF929VOB, ENCFF942MHC 120721700 ENCODE Processing Pipeline 0e08fe79b3e21eef1ba6c0b9e0e36b94 https://www.encodeproject.org/files/ENCFF901CWG/@@download/ENCFF901CWG.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF572JFH bigWig fold change over control ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288QPC, ENCFF751ASR, ENCFF929VOB, ENCFF942MHC 255384832 ENCODE Processing Pipeline 5d6bb4fe91ab7d8d022a7aaea1282a8d https://www.encodeproject.org/files/ENCFF572JFH/@@download/ENCFF572JFH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF474DNN bigWig fold change over control ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288QPC, ENCFF751ASR, ENCFF942MHC 169426140 ENCODE Processing Pipeline ce186b9c18a9f5908ce6fd67a6783eb7 https://www.encodeproject.org/files/ENCFF474DNN/@@download/ENCFF474DNN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF686VFV bed narrowPeak replicated peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF137JGK, ENCFF302QIV, ENCFF817MJT 1114638 ENCODE Processing Pipeline d9d9d6944b8c766131349f14c5681653 https://www.encodeproject.org/files/ENCFF686VFV/@@download/ENCFF686VFV.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF415VLP bigBed narrowPeak replicated peaks ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF686VFV 2610696 ENCODE Processing Pipeline e412812339ead23d79018e85ea5edf37 https://www.encodeproject.org/files/ENCFF415VLP/@@download/ENCFF415VLP.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002ETJ fastq reads ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 548219857 Bing Ren, UCSD 5986af5c5d5b9f07d220bcb0704ad139 SRA:SRR3652155 https://www.encodeproject.org/files/ENCFF002ETJ/@@download/ENCFF002ETJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXZ/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF002ETK fastq reads ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 743435243 Bing Ren, UCSD 31713946116563c318d9538b9fff6283 SRA:SRR3652154 https://www.encodeproject.org/files/ENCFF002ETK/@@download/ENCFF002ETK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXX/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF759ZZI bam alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETK, ENCFF806TVZ 557677503 ENCODE Processing Pipeline 38ee3358691eb94cb4ef045c35e2918b https://www.encodeproject.org/files/ENCFF759ZZI/@@download/ENCFF759ZZI.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF083MUU fastq reads ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 115304416 Bing Ren, UCSD 534e2bc7a0557383935e00e82637a9fe SRA:SRR3652156 https://www.encodeproject.org/files/ENCFF083MUU/@@download/ENCFF083MUU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXZ/ released mixed read lengths, low read length, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF890RRD bam alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETJ, ENCFF083MUU, ENCFF806TVZ 505369196 ENCODE Processing Pipeline b183500a634586e5fe0b19fb993871f0 https://www.encodeproject.org/files/ENCFF890RRD/@@download/ENCFF890RRD.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF578CYK bed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF759ZZI 951337 ENCODE Processing Pipeline 9181cf2d77daad8592e6b580a5e7df9c https://www.encodeproject.org/files/ENCFF578CYK/@@download/ENCFF578CYK.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF454YVO bed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF759ZZI, ENCFF890RRD 985016 ENCODE Processing Pipeline 1b364d7b7db3fd46bb155f6796aa8cd1 https://www.encodeproject.org/files/ENCFF454YVO/@@download/ENCFF454YVO.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF907RYV bigWig signal p-value ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF759ZZI, ENCFF890RRD 425195249 ENCODE Processing Pipeline 0cd849b8409a7b179d55bdaa54775a53 https://www.encodeproject.org/files/ENCFF907RYV/@@download/ENCFF907RYV.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF280TRX bed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF890RRD 895137 ENCODE Processing Pipeline 25113c0388e295bcff9522a701c43046 https://www.encodeproject.org/files/ENCFF280TRX/@@download/ENCFF280TRX.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF722LTS bigBed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF578CYK 2796219 ENCODE Processing Pipeline 8ebcd766764e3d94665149daed5154cc https://www.encodeproject.org/files/ENCFF722LTS/@@download/ENCFF722LTS.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF206SEP bigBed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF280TRX 2669785 ENCODE Processing Pipeline 31c357826001db476f7a148b417be1a2 https://www.encodeproject.org/files/ENCFF206SEP/@@download/ENCFF206SEP.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF589ACH bigBed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF454YVO 2868723 ENCODE Processing Pipeline e552c3c2fa7a90f7dde00d223967291a https://www.encodeproject.org/files/ENCFF589ACH/@@download/ENCFF589ACH.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF368VCP bigWig signal p-value ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF890RRD 288212954 ENCODE Processing Pipeline 401f019a04ef7843acc1363c428b2680 https://www.encodeproject.org/files/ENCFF368VCP/@@download/ENCFF368VCP.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF604ASL bigWig signal p-value ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF759ZZI 377216610 ENCODE Processing Pipeline 8c59e5030d4e25ce604bd9edb860b076 https://www.encodeproject.org/files/ENCFF604ASL/@@download/ENCFF604ASL.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF186GHN bigWig fold change over control ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF759ZZI 245363947 ENCODE Processing Pipeline a87bb4570d8128666ec7cd3bb273170c https://www.encodeproject.org/files/ENCFF186GHN/@@download/ENCFF186GHN.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF863TWK bigWig fold change over control ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF890RRD 229815160 ENCODE Processing Pipeline d1ab4aa53aab21804f6967619a1f7bfa https://www.encodeproject.org/files/ENCFF863TWK/@@download/ENCFF863TWK.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF478WSM bed narrowPeak replicated peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF280TRX, ENCFF454YVO, ENCFF578CYK 1011874 ENCODE Processing Pipeline 332ed26cf1d688779fcb87cd614b3bb6 https://www.encodeproject.org/files/ENCFF478WSM/@@download/ENCFF478WSM.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF358AEL bigBed narrowPeak replicated peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF478WSM 2212923 ENCODE Processing Pipeline 588f67040dc6b439f4f1dadccf685ecf https://www.encodeproject.org/files/ENCFF358AEL/@@download/ENCFF358AEL.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF884CLW bigWig fold change over control ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF759ZZI, ENCFF890RRD 398205689 ENCODE Processing Pipeline d1cb1661ae23b9522ebc33a883e61119 https://www.encodeproject.org/files/ENCFF884CLW/@@download/ENCFF884CLW.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF912MNS bam alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETK, ENCFF018NEO 557610981 ENCODE Processing Pipeline 5ba06941bfa9033781dd6c2407e16722 https://www.encodeproject.org/files/ENCFF912MNS/@@download/ENCFF912MNS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF763HKZ bam unfiltered alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETK, ENCFF018NEO 891231588 ENCODE Processing Pipeline e5b145bc8850aadd0bc7e7407dd0c99a https://www.encodeproject.org/files/ENCFF763HKZ/@@download/ENCFF763HKZ.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF434DRX bam unfiltered alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETJ, ENCFF018NEO, ENCFF083MUU 771702061 ENCODE Processing Pipeline 3265c467e89b725263f28261f64a908c https://www.encodeproject.org/files/ENCFF434DRX/@@download/ENCFF434DRX.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF673JYS bam alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETJ, ENCFF018NEO, ENCFF083MUU 478957831 ENCODE Processing Pipeline 8af1ab3d8ee7f1cfe9e991aeb72e42ae https://www.encodeproject.org/files/ENCFF673JYS/@@download/ENCFF673JYS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF743SKP bed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF673JYS 914301 ENCODE Processing Pipeline f028d306d3a4924a2ad8e750bef7d3f3 https://www.encodeproject.org/files/ENCFF743SKP/@@download/ENCFF743SKP.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF569IBO bigBed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF990EUW 2798779 ENCODE Processing Pipeline 518fb5abdd7e20509ffec37ebf3b79a8 https://www.encodeproject.org/files/ENCFF569IBO/@@download/ENCFF569IBO.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF990EUW bed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF912MNS 952278 ENCODE Processing Pipeline da9de5fd6832a358a0d0154e885b6a31 https://www.encodeproject.org/files/ENCFF990EUW/@@download/ENCFF990EUW.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF607QNO bed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF673JYS, ENCFF912MNS 993468 ENCODE Processing Pipeline edfc21e017e8b3d22d9a4e077b7508f6 https://www.encodeproject.org/files/ENCFF607QNO/@@download/ENCFF607QNO.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF006VUD bigBed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF743SKP 2718186 ENCODE Processing Pipeline 6e422fe2e6d7d8a38cd959f38a2829c1 https://www.encodeproject.org/files/ENCFF006VUD/@@download/ENCFF006VUD.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF036QIQ bigBed narrowPeak peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF607QNO 2891752 ENCODE Processing Pipeline 08e9faa2770a0465327f0af40f44ab0c https://www.encodeproject.org/files/ENCFF036QIQ/@@download/ENCFF036QIQ.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF161JXS bigWig signal p-value ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF912MNS 339196342 ENCODE Processing Pipeline b63d31a089f087a3f41400ef490d8527 https://www.encodeproject.org/files/ENCFF161JXS/@@download/ENCFF161JXS.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF537TLN bigWig signal p-value ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF673JYS 325088689 ENCODE Processing Pipeline a5ecf3eaac0ea659e31ff27bf6a0b0dd https://www.encodeproject.org/files/ENCFF537TLN/@@download/ENCFF537TLN.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF637OVF bigWig signal p-value ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF673JYS, ENCFF912MNS 377260585 ENCODE Processing Pipeline f5a2d900403e028fe510ddaee8f1edc7 https://www.encodeproject.org/files/ENCFF637OVF/@@download/ENCFF637OVF.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF857MKY bigWig fold change over control ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF426BAZ, ENCFF912MNS 246138039 ENCODE Processing Pipeline fbed8cd49568f3eeee9d817633ab408d https://www.encodeproject.org/files/ENCFF857MKY/@@download/ENCFF857MKY.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF974BRU bigWig fold change over control ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF673JYS 227130074 ENCODE Processing Pipeline e3e5dcc5dcdf4116d65ab62d0e897905 https://www.encodeproject.org/files/ENCFF974BRU/@@download/ENCFF974BRU.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF362OAA bigWig fold change over control ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF426BAZ, ENCFF673JYS, ENCFF912MNS 395644465 ENCODE Processing Pipeline d49ec621a7992435a1d5bd84c8c56eca https://www.encodeproject.org/files/ENCFF362OAA/@@download/ENCFF362OAA.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF039VCT bed narrowPeak replicated peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF607QNO, ENCFF743SKP, ENCFF990EUW 1026265 ENCODE Processing Pipeline 7025b076b54e66c05614cc010ce615ce https://www.encodeproject.org/files/ENCFF039VCT/@@download/ENCFF039VCT.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF263XSN bigBed narrowPeak replicated peaks ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF039VCT 2240812 ENCODE Processing Pipeline 4852851b7029bee0181765df12e89f73 https://www.encodeproject.org/files/ENCFF263XSN/@@download/ENCFF263XSN.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF002ALO fastq reads ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1098280066 Bing Ren, UCSD d950612283743b5a85fd6d0ccf05f2a9 SRA:SRR3653235 https://www.encodeproject.org/files/ENCFF002ALO/@@download/ENCFF002ALO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQQ/ released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002ALS fastq reads ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1613456656 Bing Ren, UCSD a8515934973cadc928a6c2c66d32fe74 SRA:SRR3653236 https://www.encodeproject.org/files/ENCFF002ALS/@@download/ENCFF002ALS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQR/ released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF140MOQ bam alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALO, ENCFF806TVZ 832604888 ENCODE Processing Pipeline 388310a7e853efb69f32b31078dd4953 https://www.encodeproject.org/files/ENCFF140MOQ/@@download/ENCFF140MOQ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF406DCR bam alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALS, ENCFF806TVZ 991680205 ENCODE Processing Pipeline dfc2546d3195feb6a9374c04221b1a3f https://www.encodeproject.org/files/ENCFF406DCR/@@download/ENCFF406DCR.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF692ZLA bigBed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF347ILY 2668227 ENCODE Processing Pipeline 6c9d8e39ad0fcd433f9405aa794f2a88 https://www.encodeproject.org/files/ENCFF692ZLA/@@download/ENCFF692ZLA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF177TUM bigBed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF414HFH 2389395 ENCODE Processing Pipeline bee999d33600e3ea6d7c5ba7f2fb7640 https://www.encodeproject.org/files/ENCFF177TUM/@@download/ENCFF177TUM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF414HFH bed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF140MOQ, ENCFF148UUT, ENCFF791KJV 730083 ENCODE Processing Pipeline 55d69518ae805324eea9a4aa0136945e https://www.encodeproject.org/files/ENCFF414HFH/@@download/ENCFF414HFH.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF347ILY bed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF140MOQ, ENCFF148UUT, ENCFF406DCR, ENCFF791KJV 833463 ENCODE Processing Pipeline b6bf5897bbbf163b20fb82d65e59f4d5 https://www.encodeproject.org/files/ENCFF347ILY/@@download/ENCFF347ILY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF055PWA bigBed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF098ZNE 2548398 ENCODE Processing Pipeline 12623d4f24e17b761cdc1a9ef812fe94 https://www.encodeproject.org/files/ENCFF055PWA/@@download/ENCFF055PWA.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF098ZNE bed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF406DCR, ENCFF791KJV 797485 ENCODE Processing Pipeline e4d62c9de084721577b061fd8d6cfb65 https://www.encodeproject.org/files/ENCFF098ZNE/@@download/ENCFF098ZNE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF167XBG bigWig signal p-value ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF140MOQ, ENCFF148UUT, ENCFF791KJV 470123555 ENCODE Processing Pipeline 39f8a0017288c22799800cfde5e5ae15 https://www.encodeproject.org/files/ENCFF167XBG/@@download/ENCFF167XBG.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF628PRB bigWig signal p-value ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF406DCR, ENCFF791KJV 435800785 ENCODE Processing Pipeline 95f122c1292972525f7f5fc5b3c81780 https://www.encodeproject.org/files/ENCFF628PRB/@@download/ENCFF628PRB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF472ZLE bigWig signal p-value ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF140MOQ, ENCFF148UUT, ENCFF406DCR, ENCFF791KJV 598860379 ENCODE Processing Pipeline 49d5bc2aaeae5e02b6fd500fe6904d3a https://www.encodeproject.org/files/ENCFF472ZLE/@@download/ENCFF472ZLE.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF358CBW bigWig fold change over control ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF140MOQ, ENCFF148UUT, ENCFF791KJV 387430705 ENCODE Processing Pipeline a32e73dfa3eb4fc0e377d32f1dd06dd0 https://www.encodeproject.org/files/ENCFF358CBW/@@download/ENCFF358CBW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF790PLL bigWig fold change over control ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF140MOQ, ENCFF148UUT, ENCFF406DCR, ENCFF791KJV 633894566 ENCODE Processing Pipeline f42381b8c7a584ece1c7fdb70e25c161 https://www.encodeproject.org/files/ENCFF790PLL/@@download/ENCFF790PLL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF671XSW bigWig fold change over control ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF406DCR, ENCFF791KJV 410831553 ENCODE Processing Pipeline 73b1cf4efd3d1f0544126ff57a3f68a2 https://www.encodeproject.org/files/ENCFF671XSW/@@download/ENCFF671XSW.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF481YEM bigBed narrowPeak replicated peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF084OJA 2145178 ENCODE Processing Pipeline 1ddb51e4df6daaaa94238da7115b95de https://www.encodeproject.org/files/ENCFF481YEM/@@download/ENCFF481YEM.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF084OJA bed narrowPeak replicated peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098ZNE, ENCFF347ILY, ENCFF414HFH 893592 ENCODE Processing Pipeline d2d93a316547f1d02066e11ce173a1f3 https://www.encodeproject.org/files/ENCFF084OJA/@@download/ENCFF084OJA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF237BIT bam unfiltered alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALO, ENCFF018NEO 1091339345 ENCODE Processing Pipeline d8b68d06d1f3f7f91901573ef3d234cb https://www.encodeproject.org/files/ENCFF237BIT/@@download/ENCFF237BIT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF202UDK bam alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALO, ENCFF018NEO 832474647 ENCODE Processing Pipeline cf0f1a936d77478343cab9c3ce6bd4f0 https://www.encodeproject.org/files/ENCFF202UDK/@@download/ENCFF202UDK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF141VMV bam unfiltered alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALS, ENCFF018NEO 1603624166 ENCODE Processing Pipeline 6f8610a296800aafb41e02f515fff960 https://www.encodeproject.org/files/ENCFF141VMV/@@download/ENCFF141VMV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF265OHW bam alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALS, ENCFF018NEO 991539996 ENCODE Processing Pipeline b7fe67ecb8ccb9be3901e0b83698a0a7 https://www.encodeproject.org/files/ENCFF265OHW/@@download/ENCFF265OHW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF340XAG bed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265OHW, ENCFF453URD, ENCFF702TNM 800318 ENCODE Processing Pipeline e764256c5514c58523f79a0dd69ac4e6 https://www.encodeproject.org/files/ENCFF340XAG/@@download/ENCFF340XAG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF276UNW bed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF202UDK, ENCFF453URD, ENCFF702TNM 728247 ENCODE Processing Pipeline 66fa0c62aa91a62e395f90dc6a967ed0 https://www.encodeproject.org/files/ENCFF276UNW/@@download/ENCFF276UNW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF647TKR bed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF202UDK, ENCFF265OHW, ENCFF453URD, ENCFF702TNM 834005 ENCODE Processing Pipeline 4d0a9cd383510815b5c71bd64c35812e https://www.encodeproject.org/files/ENCFF647TKR/@@download/ENCFF647TKR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF395EBW bigBed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF276UNW 2375685 ENCODE Processing Pipeline a373b7fa657cf6abcae39db6738ddd77 https://www.encodeproject.org/files/ENCFF395EBW/@@download/ENCFF395EBW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF724GTJ bigBed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF647TKR 2671027 ENCODE Processing Pipeline 737c215d7b827c3627c3e8833fcf139a https://www.encodeproject.org/files/ENCFF724GTJ/@@download/ENCFF724GTJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF768ZCE bigBed narrowPeak peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF340XAG 2560646 ENCODE Processing Pipeline 1c4d07a818725795248fa8eb0bbf392f https://www.encodeproject.org/files/ENCFF768ZCE/@@download/ENCFF768ZCE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF882BXB bigWig signal p-value ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF202UDK, ENCFF453URD, ENCFF702TNM 448827897 ENCODE Processing Pipeline fdd3dcf4d34fd73adcc0e475025f3c5a https://www.encodeproject.org/files/ENCFF882BXB/@@download/ENCFF882BXB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF647TMF bigWig signal p-value ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265OHW, ENCFF453URD, ENCFF702TNM 499919706 ENCODE Processing Pipeline e3d9228dd69ff8054d69cd9f4ad23c5c https://www.encodeproject.org/files/ENCFF647TMF/@@download/ENCFF647TMF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF513UJO bigWig signal p-value ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF202UDK, ENCFF265OHW, ENCFF453URD, ENCFF702TNM 597764729 ENCODE Processing Pipeline 9c919e020850a52a36115d9f0d2f8684 https://www.encodeproject.org/files/ENCFF513UJO/@@download/ENCFF513UJO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF971GWB bigWig fold change over control ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF202UDK, ENCFF453URD, ENCFF702TNM 368089433 ENCODE Processing Pipeline ab7c702c31c13b3433e7c1bbcdda2f57 https://www.encodeproject.org/files/ENCFF971GWB/@@download/ENCFF971GWB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF055LAX bigWig fold change over control ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265OHW, ENCFF453URD, ENCFF702TNM 422964846 ENCODE Processing Pipeline 5d977ef38f97b12779223ae46573ac51 https://www.encodeproject.org/files/ENCFF055LAX/@@download/ENCFF055LAX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF924CKT bigWig fold change over control ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF202UDK, ENCFF265OHW, ENCFF453URD, ENCFF702TNM 633842081 ENCODE Processing Pipeline 52376b797cf66a09a42935e09f502f7c https://www.encodeproject.org/files/ENCFF924CKT/@@download/ENCFF924CKT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF711KBX bed narrowPeak replicated peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF276UNW, ENCFF340XAG, ENCFF647TKR 913947 ENCODE Processing Pipeline 8062888b0d49cd12a18f82d64e262661 https://www.encodeproject.org/files/ENCFF711KBX/@@download/ENCFF711KBX.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF184WOD bigBed narrowPeak replicated peaks ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF711KBX 2192577 ENCODE Processing Pipeline ef5e60fdc3991435d7e2be9989ea0503 https://www.encodeproject.org/files/ENCFF184WOD/@@download/ENCFF184WOD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002BXD fastq reads ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1217701062 Bing Ren, UCSD 9c42f980fe42e8505bd4f0977ba7e866 SRA:SRR3651417 https://www.encodeproject.org/files/ENCFF002BXD/@@download/ENCFF002BXD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF828KNV fastq reads ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1302812329 Bing Ren, UCSD f1eb08ee17c4d8df3e6a212b560a885e SRA:SRR3651418 https://www.encodeproject.org/files/ENCFF828KNV/@@download/ENCFF828KNV.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF394VIE bam alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF806TVZ, ENCFF828KNV 892497000 ENCODE Processing Pipeline bb76d42b793c3bcd3a40b829206ced44 https://www.encodeproject.org/files/ENCFF394VIE/@@download/ENCFF394VIE.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF162MYU bam alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXD, ENCFF806TVZ 896792198 ENCODE Processing Pipeline 0b940570c10d06769109f82eb763b968 https://www.encodeproject.org/files/ENCFF162MYU/@@download/ENCFF162MYU.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF923TTG bigBed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF076VPK 1782383 ENCODE Processing Pipeline af8ac3b193d73c31d0914da031e67857 https://www.encodeproject.org/files/ENCFF923TTG/@@download/ENCFF923TTG.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF076VPK bed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394VIE, ENCFF562EMV, ENCFF623BMA 549733 ENCODE Processing Pipeline bad7166d3e7f8afb6ea98c6c61a6c2a7 https://www.encodeproject.org/files/ENCFF076VPK/@@download/ENCFF076VPK.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF698DTS bed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF162MYU, ENCFF562EMV, ENCFF623BMA 557650 ENCODE Processing Pipeline 1da477dc983e0b8b6bc4e40398c20023 https://www.encodeproject.org/files/ENCFF698DTS/@@download/ENCFF698DTS.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF553MKC bed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF162MYU, ENCFF394VIE, ENCFF562EMV, ENCFF623BMA 528912 ENCODE Processing Pipeline 021b01328bccbec4187f58d0278baec2 https://www.encodeproject.org/files/ENCFF553MKC/@@download/ENCFF553MKC.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF399PLD bigBed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF698DTS 1805630 ENCODE Processing Pipeline 642e2bf37f34a4fcf49224efde4f6a82 https://www.encodeproject.org/files/ENCFF399PLD/@@download/ENCFF399PLD.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF885OYU bigWig signal p-value ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF162MYU, ENCFF562EMV, ENCFF623BMA 376614461 ENCODE Processing Pipeline 4f7c05852eb8f7c2fe179ec6e74e1e98 https://www.encodeproject.org/files/ENCFF885OYU/@@download/ENCFF885OYU.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF732HUV bigWig signal p-value ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394VIE, ENCFF562EMV, ENCFF623BMA 398131679 ENCODE Processing Pipeline f8f0202479e586c5fc1e4738d830fde0 https://www.encodeproject.org/files/ENCFF732HUV/@@download/ENCFF732HUV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF990QSK bigBed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF553MKC 1708738 ENCODE Processing Pipeline b7cb2573df8199cd2673dd4601c8eb95 https://www.encodeproject.org/files/ENCFF990QSK/@@download/ENCFF990QSK.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF910ZWL bigWig signal p-value ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF162MYU, ENCFF394VIE, ENCFF562EMV, ENCFF623BMA 423907765 ENCODE Processing Pipeline 655b3c7322a1d44eff09f07752f13ba0 https://www.encodeproject.org/files/ENCFF910ZWL/@@download/ENCFF910ZWL.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF601ALO bigWig fold change over control ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF162MYU, ENCFF562EMV, ENCFF623BMA 334702347 ENCODE Processing Pipeline 2611cf7f7f5dce9ced982d3b854dac87 https://www.encodeproject.org/files/ENCFF601ALO/@@download/ENCFF601ALO.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF263QRE bigBed narrowPeak replicated peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF267FGJ 1670407 ENCODE Processing Pipeline dc899d3726faab430f8a6dffd3080f93 https://www.encodeproject.org/files/ENCFF263QRE/@@download/ENCFF263QRE.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF800ZJE bigWig fold change over control ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF162MYU, ENCFF394VIE, ENCFF562EMV, ENCFF623BMA 549782205 ENCODE Processing Pipeline c97fd483b4ec4dbe17a5a75efcbf7cee https://www.encodeproject.org/files/ENCFF800ZJE/@@download/ENCFF800ZJE.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF946CDT bigWig fold change over control ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394VIE, ENCFF562EMV, ENCFF623BMA 354992081 ENCODE Processing Pipeline dc652821996a76036d9c9cb8c8b551e3 https://www.encodeproject.org/files/ENCFF946CDT/@@download/ENCFF946CDT.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF267FGJ bed narrowPeak replicated peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF076VPK, ENCFF553MKC, ENCFF698DTS 702083 ENCODE Processing Pipeline 5963b4aa17518700c877b94d3d2a18ff https://www.encodeproject.org/files/ENCFF267FGJ/@@download/ENCFF267FGJ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF183SCD bam unfiltered alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXD, ENCFF018NEO 1438206888 ENCODE Processing Pipeline eff4601c5110af9452514da8ebd93749 https://www.encodeproject.org/files/ENCFF183SCD/@@download/ENCFF183SCD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF382WZC bam unfiltered alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF828KNV 1493540920 ENCODE Processing Pipeline 02399f5a4f98bb6b07f64f0efbf59b1a https://www.encodeproject.org/files/ENCFF382WZC/@@download/ENCFF382WZC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF748WAP bam alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXD, ENCFF018NEO 896623889 ENCODE Processing Pipeline 4d57be1d051b77ef59a08ecb07b7f687 https://www.encodeproject.org/files/ENCFF748WAP/@@download/ENCFF748WAP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF687UZO bam alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF828KNV 892342526 ENCODE Processing Pipeline 9b952d3c0fe2542d8af319903c7999b9 https://www.encodeproject.org/files/ENCFF687UZO/@@download/ENCFF687UZO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF698OZL bed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF748WAP, ENCFF903NWQ, ENCFF995XOU 557621 ENCODE Processing Pipeline 9af62af21384dfebda158761fc861be0 https://www.encodeproject.org/files/ENCFF698OZL/@@download/ENCFF698OZL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF770EUO bed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF687UZO, ENCFF903NWQ 465859 ENCODE Processing Pipeline b23da55b929779a90154b8bd6632ab4b https://www.encodeproject.org/files/ENCFF770EUO/@@download/ENCFF770EUO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF978JLS bigBed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF698OZL 1807673 ENCODE Processing Pipeline d76ea328c26ac051b118b1f8548a8962 https://www.encodeproject.org/files/ENCFF978JLS/@@download/ENCFF978JLS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF127ZMG bed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF687UZO, ENCFF748WAP, ENCFF903NWQ, ENCFF995XOU 538465 ENCODE Processing Pipeline dc60b5d71216c674dc34ce8a87fdc5be https://www.encodeproject.org/files/ENCFF127ZMG/@@download/ENCFF127ZMG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF112UIB bigBed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF770EUO 1595210 ENCODE Processing Pipeline 873686454f3a30c40eedd97844beeb4b https://www.encodeproject.org/files/ENCFF112UIB/@@download/ENCFF112UIB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF668TPW bigWig signal p-value ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF748WAP, ENCFF903NWQ, ENCFF995XOU 376120764 ENCODE Processing Pipeline 3fd3d1f8e55acc6c0e2202fa37c60fd8 https://www.encodeproject.org/files/ENCFF668TPW/@@download/ENCFF668TPW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF940UVK bigBed narrowPeak peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF127ZMG 1734523 ENCODE Processing Pipeline bab2474ff34f6d5eb1bc180648f3f076 https://www.encodeproject.org/files/ENCFF940UVK/@@download/ENCFF940UVK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF230FRV bigWig signal p-value ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF687UZO, ENCFF903NWQ 197469105 ENCODE Processing Pipeline f54a46c70a3b6c63cfd98542b035d7a4 https://www.encodeproject.org/files/ENCFF230FRV/@@download/ENCFF230FRV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF710GWX bigWig signal p-value ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF687UZO, ENCFF748WAP, ENCFF903NWQ, ENCFF995XOU 422022660 ENCODE Processing Pipeline 72008ae9017a2ad51a47cc553baad1b9 https://www.encodeproject.org/files/ENCFF710GWX/@@download/ENCFF710GWX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF421OJO bigWig fold change over control ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF748WAP, ENCFF903NWQ, ENCFF995XOU 334367589 ENCODE Processing Pipeline cfdbb795f1d55170bc2e21674553d9b0 https://www.encodeproject.org/files/ENCFF421OJO/@@download/ENCFF421OJO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF308QUE bigWig fold change over control ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF687UZO, ENCFF903NWQ 288010737 ENCODE Processing Pipeline e5927f19003d292133ba4e6f9c617057 https://www.encodeproject.org/files/ENCFF308QUE/@@download/ENCFF308QUE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF959NHK bigWig fold change over control ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF687UZO, ENCFF748WAP, ENCFF903NWQ, ENCFF995XOU 546958629 ENCODE Processing Pipeline fbca85a2b01e80ff53530a608923aee0 https://www.encodeproject.org/files/ENCFF959NHK/@@download/ENCFF959NHK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF726YXX bed narrowPeak replicated peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF127ZMG, ENCFF698OZL, ENCFF770EUO 693919 ENCODE Processing Pipeline d1145cb638b081d554353f4153f752e4 https://www.encodeproject.org/files/ENCFF726YXX/@@download/ENCFF726YXX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF435DOY bigBed narrowPeak replicated peaks ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF726YXX 1657907 ENCODE Processing Pipeline 3dc423feefd2b2c55fcbd30b63f30f5a https://www.encodeproject.org/files/ENCFF435DOY/@@download/ENCFF435DOY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF001LVH bam alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LVP 5093603581 Ross Hardison, PennState 6746fa9b75b85015c5cad924534a2fd4 https://www.encodeproject.org/files/ENCFF001LVH/@@download/ENCFF001LVH.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LVI bigBed broadPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YBQ 3555852 Ross Hardison, PennState 670fbeecf8659e5239a8dfcd08503eaf https://www.encodeproject.org/files/ENCFF001LVI/@@download/ENCFF001LVI.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LVJ bigBed broadPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YBR 3915906 Ross Hardison, PennState ef03fb595d3572db974866e1a4c19736 https://www.encodeproject.org/files/ENCFF001LVJ/@@download/ENCFF001LVJ.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LVK bigBed broadPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YBS 3159061 Ross Hardison, PennState 2e477932b6d5e79584b2fe411f0ad0c8 https://www.encodeproject.org/files/ENCFF001LVK/@@download/ENCFF001LVK.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LVL bigWig signal ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5714337869 Ross Hardison, PennState 434303cd44a4f237a26ec6ecf8323ab5 https://www.encodeproject.org/files/ENCFF001LVL/@@download/ENCFF001LVL.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LVM bam alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LVW 6214429387 Ross Hardison, PennState e52f01ce1352f44ef1c062754346d8fa https://www.encodeproject.org/files/ENCFF001LVM/@@download/ENCFF001LVM.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LVN bigWig signal ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5910350613 Ross Hardison, PennState 43beeee0446807299aeda957441b2c4a https://www.encodeproject.org/files/ENCFF001LVN/@@download/ENCFF001LVN.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LVO bigWig signal ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 6450692809 Ross Hardison, PennState d67e25643b7b5d76bbec245abd6d6e53 https://www.encodeproject.org/files/ENCFF001LVO/@@download/ENCFF001LVO.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LVP fastq reads ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4629510922 Ross Hardison, PennState 25bd9d6f001c64428b0b3c526ded227f https://www.encodeproject.org/files/ENCFF001LVP/@@download/ENCFF001LVP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLS/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001LVW fastq reads ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 48 single-ended 5587546111 Ross Hardison, PennState 815ff032ce35118333162e59e67d0803 https://www.encodeproject.org/files/ENCFF001LVW/@@download/ENCFF001LVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLY/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001YBQ bed broadPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1945962 Ross Hardison, PennState 86d264cc1e5407fdd7a7f72299fa33e8 https://www.encodeproject.org/files/ENCFF001YBQ/@@download/ENCFF001YBQ.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YBR bed broadPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1809554 Ross Hardison, PennState 9becc98d9e41a72630a69bd7f98aa100 https://www.encodeproject.org/files/ENCFF001YBR/@@download/ENCFF001YBR.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YBS bed broadPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 1597892 Ross Hardison, PennState 142206f7953b4785b76a2387e1066c50 https://www.encodeproject.org/files/ENCFF001YBS/@@download/ENCFF001YBS.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF677WVN bam unfiltered alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LVP, ENCFF018NEO 4175999304 ENCODE Processing Pipeline daacea5a914b47684bc187b8c157a290 https://www.encodeproject.org/files/ENCFF677WVN/@@download/ENCFF677WVN.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF833RSP bam unfiltered alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVW, ENCFF018NEO 5552411430 ENCODE Processing Pipeline d04ef6c6523b5b5302592265547a0015 https://www.encodeproject.org/files/ENCFF833RSP/@@download/ENCFF833RSP.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF333WFN bam alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LVP, ENCFF018NEO 2443552880 ENCODE Processing Pipeline bdf716ef7acfc880f0151f51023deb5b https://www.encodeproject.org/files/ENCFF333WFN/@@download/ENCFF333WFN.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF575AMM bam alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVW, ENCFF018NEO 3025193190 ENCODE Processing Pipeline 0b01d9fddb506dcb657fdcd3e07fea84 https://www.encodeproject.org/files/ENCFF575AMM/@@download/ENCFF575AMM.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF457WOZ bed narrowPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF575AMM, ENCFF867VYO 6040487 ENCODE Processing Pipeline 7222aaf91b208ca0c6db1addcad1c964 https://www.encodeproject.org/files/ENCFF457WOZ/@@download/ENCFF457WOZ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF265NUF bed narrowPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF333WFN, ENCFF867VYO 6339638 ENCODE Processing Pipeline cf7410d78d01065075d9ffef83684d59 https://www.encodeproject.org/files/ENCFF265NUF/@@download/ENCFF265NUF.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF113MUF bed narrowPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF333WFN, ENCFF575AMM, ENCFF867VYO 6704389 ENCODE Processing Pipeline d8c88f0c7c2e4ac09dfeb1680bf8085b https://www.encodeproject.org/files/ENCFF113MUF/@@download/ENCFF113MUF.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF032OOJ bigBed narrowPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF265NUF 15035841 ENCODE Processing Pipeline d606aaaa36060e2e7f2ba8a913c4c9f1 https://www.encodeproject.org/files/ENCFF032OOJ/@@download/ENCFF032OOJ.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF321SVL bigBed narrowPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF457WOZ 13950491 ENCODE Processing Pipeline fbf060d295c5e7ba945227b685d64baf https://www.encodeproject.org/files/ENCFF321SVL/@@download/ENCFF321SVL.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF463AOC bigBed narrowPeak peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF113MUF 15731998 ENCODE Processing Pipeline 56e00911b349684f4843543fbd6e07ca https://www.encodeproject.org/files/ENCFF463AOC/@@download/ENCFF463AOC.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF352JNA bigWig signal p-value ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF333WFN, ENCFF867VYO 1367229785 ENCODE Processing Pipeline c8019a76dc4699746d83e086f0a7e23f https://www.encodeproject.org/files/ENCFF352JNA/@@download/ENCFF352JNA.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF700MZH bigWig signal p-value ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF575AMM, ENCFF867VYO 1129647587 ENCODE Processing Pipeline 0b181f6e0f1210b1206ebee6da488fd3 https://www.encodeproject.org/files/ENCFF700MZH/@@download/ENCFF700MZH.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF466ALE bigWig fold change over control ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF333WFN, ENCFF867VYO 1255940664 ENCODE Processing Pipeline 36b34a381781e430e346839a10757736 https://www.encodeproject.org/files/ENCFF466ALE/@@download/ENCFF466ALE.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF286TUL bigWig signal p-value ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF333WFN, ENCFF575AMM, ENCFF867VYO 1684678143 ENCODE Processing Pipeline 327b826797d95205f9af1f0166089d7b https://www.encodeproject.org/files/ENCFF286TUL/@@download/ENCFF286TUL.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF204AMW bigWig fold change over control ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF575AMM, ENCFF867VYO 1356940474 ENCODE Processing Pipeline adcb13df427c0f2f1cee8e02bf89c682 https://www.encodeproject.org/files/ENCFF204AMW/@@download/ENCFF204AMW.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF884NFT bed narrowPeak replicated peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF113MUF, ENCFF265NUF, ENCFF457WOZ 6953742 ENCODE Processing Pipeline 714f5d528fc793835f445a78d571718b https://www.encodeproject.org/files/ENCFF884NFT/@@download/ENCFF884NFT.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF668YWK bigBed narrowPeak replicated peaks ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF884NFT 12763197 ENCODE Processing Pipeline 6b9445c97445c804494f121fc4db6553 https://www.encodeproject.org/files/ENCFF668YWK/@@download/ENCFF668YWK.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF662VCX bigWig fold change over control ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF333WFN, ENCFF575AMM, ENCFF867VYO 1891272378 ENCODE Processing Pipeline cd1d0ef2b6d869276e1b30fee5c8b15c https://www.encodeproject.org/files/ENCFF662VCX/@@download/ENCFF662VCX.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF001ZSE fastq reads ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1065881856 Bing Ren, UCSD 9263eb6b5ebf97124b62b0823de69ec6 SRA:SRR3652133 https://www.encodeproject.org/files/ENCFF001ZSE/@@download/ENCFF001ZSE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZSF fastq reads ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1008688124 Bing Ren, UCSD 89d93698d59bd128f29b61a92c74da69 SRA:SRR3652131 https://www.encodeproject.org/files/ENCFF001ZSF/@@download/ENCFF001ZSF.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF458UQE fastq reads ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 169098733 Bing Ren, UCSD 12b616971a1b20a291aec380a76e1a95 SRA:SRR3652134 https://www.encodeproject.org/files/ENCFF458UQE/@@download/ENCFF458UQE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF999ZMD fastq reads ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 371919970 Bing Ren, UCSD 27e552ad4a7ad186fbe4670ec64b7d5c SRA:SRR3652132 https://www.encodeproject.org/files/ENCFF999ZMD/@@download/ENCFF999ZMD.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF966LRM bam alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSF, ENCFF806TVZ, ENCFF999ZMD 1273243901 ENCODE Processing Pipeline 3c2dc2f6343f3d8a8604f50ce807148c https://www.encodeproject.org/files/ENCFF966LRM/@@download/ENCFF966LRM.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF161QMV bam alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSE, ENCFF458UQE, ENCFF806TVZ 1155244852 ENCODE Processing Pipeline cef89614c53e83c5b1e7bec79e5a13d7 https://www.encodeproject.org/files/ENCFF161QMV/@@download/ENCFF161QMV.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF172UTB bed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF161QMV, ENCFF657TOI 1597131 ENCODE Processing Pipeline 1c6fcb530b9a952766278c66576561d8 https://www.encodeproject.org/files/ENCFF172UTB/@@download/ENCFF172UTB.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF572EEH bed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF966LRM 1468967 ENCODE Processing Pipeline d18b5500d606a73c4a42df315068fc3a https://www.encodeproject.org/files/ENCFF572EEH/@@download/ENCFF572EEH.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF477DQW bed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF161QMV, ENCFF657TOI, ENCFF966LRM 1115893 ENCODE Processing Pipeline 1452eddd92f599b464c8d9d67f510156 https://www.encodeproject.org/files/ENCFF477DQW/@@download/ENCFF477DQW.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF649WUE bigBed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF172UTB 3625382 ENCODE Processing Pipeline d42329e5b43f159a77d8b1b214e461dc https://www.encodeproject.org/files/ENCFF649WUE/@@download/ENCFF649WUE.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF491NEI bigBed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF572EEH 3400921 ENCODE Processing Pipeline e49ef4c1856f8c66f66fd6b9f7af80f5 https://www.encodeproject.org/files/ENCFF491NEI/@@download/ENCFF491NEI.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF405MFA bigBed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF477DQW 2620616 ENCODE Processing Pipeline 6255f670e0f52e4d610808f974955d35 https://www.encodeproject.org/files/ENCFF405MFA/@@download/ENCFF405MFA.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF024GXJ bigWig signal p-value ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF161QMV, ENCFF657TOI 501179403 ENCODE Processing Pipeline f7375110feed55374e1889f454a2f76c https://www.encodeproject.org/files/ENCFF024GXJ/@@download/ENCFF024GXJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF514WIL bigWig signal p-value ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF966LRM 395687784 ENCODE Processing Pipeline 0bbbe3f99e98dbaaca7f1236a45b1d43 https://www.encodeproject.org/files/ENCFF514WIL/@@download/ENCFF514WIL.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF035EPH bigWig signal p-value ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF161QMV, ENCFF657TOI, ENCFF966LRM 506567401 ENCODE Processing Pipeline 1bdf148b3c7800145f047859a51eaad4 https://www.encodeproject.org/files/ENCFF035EPH/@@download/ENCFF035EPH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF683UTT bigWig fold change over control ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF161QMV, ENCFF657TOI 461605656 ENCODE Processing Pipeline 8dff57ec45f84b719a758416736ee3b1 https://www.encodeproject.org/files/ENCFF683UTT/@@download/ENCFF683UTT.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF371RKS bigWig fold change over control ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF966LRM 490571115 ENCODE Processing Pipeline a1188be8281ca34c0ae13f84eab31a50 https://www.encodeproject.org/files/ENCFF371RKS/@@download/ENCFF371RKS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF856PYW bigWig fold change over control ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF161QMV, ENCFF657TOI, ENCFF966LRM 759095662 ENCODE Processing Pipeline fa0633018dd34955763a960082ba715f https://www.encodeproject.org/files/ENCFF856PYW/@@download/ENCFF856PYW.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF632FMK bed narrowPeak replicated peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF172UTB, ENCFF477DQW, ENCFF572EEH 1090554 ENCODE Processing Pipeline 0c1a7412624de8959597129164fe2d47 https://www.encodeproject.org/files/ENCFF632FMK/@@download/ENCFF632FMK.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF535ERW bigBed narrowPeak replicated peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF632FMK 2220323 ENCODE Processing Pipeline fb98b017f5267c2fe7dcdcaede0e7067 https://www.encodeproject.org/files/ENCFF535ERW/@@download/ENCFF535ERW.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF990JNY bam unfiltered alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSF, ENCFF018NEO, ENCFF999ZMD 1704295544 ENCODE Processing Pipeline 5b4606cd77ab1a91dfca96360eade8cc https://www.encodeproject.org/files/ENCFF990JNY/@@download/ENCFF990JNY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF049XPY bam unfiltered alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSE, ENCFF018NEO, ENCFF458UQE 1570801088 ENCODE Processing Pipeline 67b9b47a2378a4afeaf2579bffcd32bc https://www.encodeproject.org/files/ENCFF049XPY/@@download/ENCFF049XPY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF885NWI bam alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSE, ENCFF018NEO, ENCFF458UQE 1107695140 ENCODE Processing Pipeline c99a06400a0d116866e77fd3c45ef3f1 https://www.encodeproject.org/files/ENCFF885NWI/@@download/ENCFF885NWI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF933AXR bam alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSF, ENCFF018NEO, ENCFF999ZMD 1177151634 ENCODE Processing Pipeline 5e2dc49e2334547012ed006b122f7c88 https://www.encodeproject.org/files/ENCFF933AXR/@@download/ENCFF933AXR.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF882CXR bed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF735XMC, ENCFF885NWI 1864413 ENCODE Processing Pipeline 1a5ef2fc7c64af3d92cab1f2c298d942 https://www.encodeproject.org/files/ENCFF882CXR/@@download/ENCFF882CXR.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF583QQD bed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF735XMC, ENCFF933AXR 1591070 ENCODE Processing Pipeline 8aa73ba3823df65b7a8af34b3eff7d7b https://www.encodeproject.org/files/ENCFF583QQD/@@download/ENCFF583QQD.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF879KAI bed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF735XMC, ENCFF885NWI, ENCFF933AXR 1246536 ENCODE Processing Pipeline 0a7fface413177b0da0aa5621fe259fc https://www.encodeproject.org/files/ENCFF879KAI/@@download/ENCFF879KAI.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF279AWI bigBed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF882CXR 4156175 ENCODE Processing Pipeline 6fd8b28c64180a7df1df24377cd501e4 https://www.encodeproject.org/files/ENCFF279AWI/@@download/ENCFF279AWI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF934WXJ bigBed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF583QQD 3621230 ENCODE Processing Pipeline 6f4475c9eab07970a0672d86d6972bf8 https://www.encodeproject.org/files/ENCFF934WXJ/@@download/ENCFF934WXJ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF952DFN bigBed narrowPeak peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF879KAI 2861800 ENCODE Processing Pipeline 60e5930a889a7b7f52a7aa53a529f23c https://www.encodeproject.org/files/ENCFF952DFN/@@download/ENCFF952DFN.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF494PQZ bigWig signal p-value ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF735XMC, ENCFF885NWI 375604960 ENCODE Processing Pipeline 2841731491d9c28dfaf19c25e6236ec2 https://www.encodeproject.org/files/ENCFF494PQZ/@@download/ENCFF494PQZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF316JXQ bigWig signal p-value ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF735XMC, ENCFF933AXR 472521182 ENCODE Processing Pipeline 65bfe5acd5669018858e242be038752c https://www.encodeproject.org/files/ENCFF316JXQ/@@download/ENCFF316JXQ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF772RQT bigWig signal p-value ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF735XMC, ENCFF885NWI, ENCFF933AXR 498983737 ENCODE Processing Pipeline a5c8c09e46ce76a41a4dc00807247cf4 https://www.encodeproject.org/files/ENCFF772RQT/@@download/ENCFF772RQT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF692EMZ bigWig fold change over control ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF735XMC, ENCFF885NWI 453611355 ENCODE Processing Pipeline a217f868506ab3ba4bd7481bb179586b https://www.encodeproject.org/files/ENCFF692EMZ/@@download/ENCFF692EMZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF071STL bigWig fold change over control ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF735XMC, ENCFF933AXR 470670994 ENCODE Processing Pipeline 196e94137dd36280827c1fb6f6e67fc3 https://www.encodeproject.org/files/ENCFF071STL/@@download/ENCFF071STL.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF813VAT bigWig fold change over control ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF735XMC, ENCFF885NWI, ENCFF933AXR 738773119 ENCODE Processing Pipeline cf15a51d6cd7077f227f0a1c95d13e2c https://www.encodeproject.org/files/ENCFF813VAT/@@download/ENCFF813VAT.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF211AEC bed narrowPeak replicated peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF583QQD, ENCFF879KAI, ENCFF882CXR 1152748 ENCODE Processing Pipeline eccdf54a58500b355462b0387fb0f88e https://www.encodeproject.org/files/ENCFF211AEC/@@download/ENCFF211AEC.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF121BOB bigBed narrowPeak replicated peaks ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF211AEC 2327533 ENCODE Processing Pipeline 7a31305492f5066c5575a46b0372bc1e https://www.encodeproject.org/files/ENCFF121BOB/@@download/ENCFF121BOB.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZSC fastq reads ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1145745086 Bing Ren, UCSD 677ab53443b827bb896b58c920e5dc4a SRA:SRR3652150 https://www.encodeproject.org/files/ENCFF001ZSC/@@download/ENCFF001ZSC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length insufficient read depth, control insufficient read depth ENCFF001ZSD fastq reads ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1202764937 Bing Ren, UCSD 2295d4e367c3fd97283e06068fde63ed SRA:SRR3652151 https://www.encodeproject.org/files/ENCFF001ZSD/@@download/ENCFF001ZSD.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length insufficient read depth, control insufficient read depth ENCFF720XEG bam alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSD, ENCFF806TVZ 1099174526 ENCODE Processing Pipeline 7279a196a301efc726065c2b6ef528e1 https://www.encodeproject.org/files/ENCFF720XEG/@@download/ENCFF720XEG.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF886SLV bam alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSC, ENCFF806TVZ 1023251150 ENCODE Processing Pipeline 7ea7604534dd873dd5afa015d6e0cffe https://www.encodeproject.org/files/ENCFF886SLV/@@download/ENCFF886SLV.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF267EDH bigWig signal p-value ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF886SLV 429836843 ENCODE Processing Pipeline 5f83d6d51f12c351c16970148d69501d https://www.encodeproject.org/files/ENCFF267EDH/@@download/ENCFF267EDH.bigWig mm10 archived inconsistent assembly, low read length insufficient read depth, control insufficient read depth ENCFF200UGC bigWig signal p-value ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF886SLV, ENCFF972ZKQ 431708478 ENCODE Processing Pipeline 9121219110737a8618f455dcfa05c942 https://www.encodeproject.org/files/ENCFF200UGC/@@download/ENCFF200UGC.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF564NDF bed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF886SLV, ENCFF972ZKQ 1827712 ENCODE Processing Pipeline fdfab3dfd8a1e73fa9e5cb2d41c37913 https://www.encodeproject.org/files/ENCFF564NDF/@@download/ENCFF564NDF.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF785CZL bed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF720XEG, ENCFF886SLV, ENCFF972ZKQ 1484818 ENCODE Processing Pipeline 919014735c96d50a5ff560e876e6e5a3 https://www.encodeproject.org/files/ENCFF785CZL/@@download/ENCFF785CZL.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF411RJY bigBed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF488QQF 4557719 ENCODE Processing Pipeline 758a33d401abbcba9d7ee55bbd11af05 https://www.encodeproject.org/files/ENCFF411RJY/@@download/ENCFF411RJY.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF703BJT bigWig signal p-value ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF720XEG, ENCFF972ZKQ 447710329 ENCODE Processing Pipeline 0a2736a8c01421173e1696c3cc5c43df https://www.encodeproject.org/files/ENCFF703BJT/@@download/ENCFF703BJT.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF693BPW bed narrowPeak replicated peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF488QQF, ENCFF564NDF, ENCFF785CZL 1560605 ENCODE Processing Pipeline 2ddb5a8c9878f42bd040fe32dcedd55f https://www.encodeproject.org/files/ENCFF693BPW/@@download/ENCFF693BPW.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF488QQF bed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF720XEG, ENCFF972ZKQ 2055294 ENCODE Processing Pipeline 1ba124bd1d2cbe48f7bc09cca10d498d https://www.encodeproject.org/files/ENCFF488QQF/@@download/ENCFF488QQF.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF436ESY bigBed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF564NDF 4083662 ENCODE Processing Pipeline 5e6347beca85e97b00d155683805f604 https://www.encodeproject.org/files/ENCFF436ESY/@@download/ENCFF436ESY.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF942DRD bigBed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF785CZL 3395713 ENCODE Processing Pipeline 422e88882cf2d7634e5073ed5fb0d1a3 https://www.encodeproject.org/files/ENCFF942DRD/@@download/ENCFF942DRD.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF258BLM bigWig fold change over control ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF886SLV, ENCFF972ZKQ 437388107 ENCODE Processing Pipeline 39b4f9fcfebf1ef3613aec0424d4a11a https://www.encodeproject.org/files/ENCFF258BLM/@@download/ENCFF258BLM.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF578ZIT bigWig fold change over control ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF720XEG, ENCFF972ZKQ 453914981 ENCODE Processing Pipeline e7fa0b383c7e020d1357d9bf101e8493 https://www.encodeproject.org/files/ENCFF578ZIT/@@download/ENCFF578ZIT.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF892JWG bigWig fold change over control ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF720XEG, ENCFF886SLV, ENCFF972ZKQ 726297627 ENCODE Processing Pipeline be006ddd1de9a746278f1d85ddecc618 https://www.encodeproject.org/files/ENCFF892JWG/@@download/ENCFF892JWG.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF789DRO bigBed narrowPeak replicated peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF693BPW 2987225 ENCODE Processing Pipeline 48c6fa73e9bbd477766cda4127e31544 https://www.encodeproject.org/files/ENCFF789DRO/@@download/ENCFF789DRO.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF361PCQ bam unfiltered alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSD, ENCFF018NEO 1542679198 ENCODE Processing Pipeline 56031f6990afa33f7b74808476270697 https://www.encodeproject.org/files/ENCFF361PCQ/@@download/ENCFF361PCQ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF465JFY bam unfiltered alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSC, ENCFF018NEO 1477206721 ENCODE Processing Pipeline 5c2d2c6b9911d751f56b180da5d8debc https://www.encodeproject.org/files/ENCFF465JFY/@@download/ENCFF465JFY.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF102COW bam alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSD, ENCFF018NEO 1098944261 ENCODE Processing Pipeline ede888e02e50129d8c21de223735c684 https://www.encodeproject.org/files/ENCFF102COW/@@download/ENCFF102COW.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF077CVJ bam alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSC, ENCFF018NEO 1022991960 ENCODE Processing Pipeline ef22af64c78d4319cc6a2d76997afd2b https://www.encodeproject.org/files/ENCFF077CVJ/@@download/ENCFF077CVJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF566GUW bed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF077CVJ, ENCFF437LOC, ENCFF468BIZ 1821989 ENCODE Processing Pipeline 5948ca829702935efdde53f5f96d506d https://www.encodeproject.org/files/ENCFF566GUW/@@download/ENCFF566GUW.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF313WUK bed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF102COW, ENCFF437LOC, ENCFF468BIZ 2055317 ENCODE Processing Pipeline 0e6591ecbcb89e91a705dd0ee9c1c155 https://www.encodeproject.org/files/ENCFF313WUK/@@download/ENCFF313WUK.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF419EEG bed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF077CVJ, ENCFF102COW, ENCFF437LOC, ENCFF468BIZ 1474508 ENCODE Processing Pipeline a5ed2ec2e1d8ba06440458ba76791357 https://www.encodeproject.org/files/ENCFF419EEG/@@download/ENCFF419EEG.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF470QBX bigBed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF566GUW 4075969 ENCODE Processing Pipeline 15f685231f027f3bb949fc9c786caa23 https://www.encodeproject.org/files/ENCFF470QBX/@@download/ENCFF470QBX.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF075WTR bigBed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF313WUK 4560365 ENCODE Processing Pipeline b60c5f2144479346f80e0e3073bbe84a https://www.encodeproject.org/files/ENCFF075WTR/@@download/ENCFF075WTR.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF659QHJ bigBed narrowPeak peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF419EEG 3374736 ENCODE Processing Pipeline 4c552080bdc3433dc7510eb28ad06898 https://www.encodeproject.org/files/ENCFF659QHJ/@@download/ENCFF659QHJ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF658PWW bigWig signal p-value ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF077CVJ, ENCFF437LOC, ENCFF468BIZ 437444033 ENCODE Processing Pipeline 25a92acc5939391ccd16928cd57f8ddb https://www.encodeproject.org/files/ENCFF658PWW/@@download/ENCFF658PWW.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF882VHY bigWig signal p-value ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF102COW, ENCFF437LOC, ENCFF468BIZ 426327227 ENCODE Processing Pipeline 5283fba5ef7fe3c5da33da0d95c3ecb3 https://www.encodeproject.org/files/ENCFF882VHY/@@download/ENCFF882VHY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF875TEN bigWig signal p-value ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF077CVJ, ENCFF102COW, ENCFF437LOC, ENCFF468BIZ 494752064 ENCODE Processing Pipeline a9d9ec89fcd97a57fd2e6c5447e7b754 https://www.encodeproject.org/files/ENCFF875TEN/@@download/ENCFF875TEN.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF656RKR bigWig fold change over control ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF077CVJ, ENCFF437LOC, ENCFF468BIZ 432880057 ENCODE Processing Pipeline 832c5a5f720481bd127b012af998d9ff https://www.encodeproject.org/files/ENCFF656RKR/@@download/ENCFF656RKR.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF038DMD bigWig fold change over control ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF102COW, ENCFF437LOC, ENCFF468BIZ 454012393 ENCODE Processing Pipeline 51cf25cfcc1aec87ad5549826e2b6f84 https://www.encodeproject.org/files/ENCFF038DMD/@@download/ENCFF038DMD.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF554FAE bigWig fold change over control ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF077CVJ, ENCFF102COW, ENCFF437LOC, ENCFF468BIZ 720171573 ENCODE Processing Pipeline 28a765713daf3ada7f415ef19b8147d4 https://www.encodeproject.org/files/ENCFF554FAE/@@download/ENCFF554FAE.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF227ZTU bed narrowPeak replicated peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF313WUK, ENCFF419EEG, ENCFF566GUW 1577657 ENCODE Processing Pipeline 514a117e09e81eb0ca9a209d56e03431 https://www.encodeproject.org/files/ENCFF227ZTU/@@download/ENCFF227ZTU.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF831CKI bigBed narrowPeak replicated peaks ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF227ZTU 3022409 ENCODE Processing Pipeline 12d5114bebf2f0d985c08b272e7bf76d https://www.encodeproject.org/files/ENCFF831CKI/@@download/ENCFF831CKI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF483KSN fastq reads ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2288591699 Bing Ren, UCSD 077e0f5da8bcdb35e23bf4449faaf78f SRA:SRR3651980 https://www.encodeproject.org/files/ENCFF483KSN/@@download/ENCFF483KSN.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released mild to moderate bottlenecking, inconsistent platforms ENCFF832UAS fastq reads ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2467599075 Bing Ren, UCSD 043e25663b01d6f170533b3926d96249 SRA:SRR3651979 https://www.encodeproject.org/files/ENCFF832UAS/@@download/ENCFF832UAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released mild to moderate bottlenecking, inconsistent platforms ENCFF555JTW bam alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF832UAS 2057723887 ENCODE Processing Pipeline 90cc76cb257a667a962512f7a64066f4 https://www.encodeproject.org/files/ENCFF555JTW/@@download/ENCFF555JTW.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF367JMT bam alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF483KSN, ENCFF806TVZ 1842237886 ENCODE Processing Pipeline 265adebb6051d46419cc83793c6333cf https://www.encodeproject.org/files/ENCFF367JMT/@@download/ENCFF367JMT.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF240NDW bigBed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF873KOY 2592638 ENCODE Processing Pipeline 8b71075ef9aa571de498d7d1838217a9 https://www.encodeproject.org/files/ENCFF240NDW/@@download/ENCFF240NDW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF167VHW bed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF555JTW 1297380 ENCODE Processing Pipeline 1a39b285ec6545ee079a0795be2b019c https://www.encodeproject.org/files/ENCFF167VHW/@@download/ENCFF167VHW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF503RGH bigBed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF167VHW 3035279 ENCODE Processing Pipeline 5b5485eb2ae2150a964be6c463b0be1e https://www.encodeproject.org/files/ENCFF503RGH/@@download/ENCFF503RGH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF748HBQ bigBed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF573MCD 3588664 ENCODE Processing Pipeline 03151336987c9666d26d8a6d5193e743 https://www.encodeproject.org/files/ENCFF748HBQ/@@download/ENCFF748HBQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF573MCD bed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF367JMT, ENCFF555JTW 1222307 ENCODE Processing Pipeline 6e9b8e428b9d87939966a060bb324670 https://www.encodeproject.org/files/ENCFF573MCD/@@download/ENCFF573MCD.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF873KOY bed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF367JMT 1078985 ENCODE Processing Pipeline c3a726b1007b35af168f4f3256c03ff1 https://www.encodeproject.org/files/ENCFF873KOY/@@download/ENCFF873KOY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF759LFL bigWig signal p-value ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF555JTW 638718989 ENCODE Processing Pipeline 1496a17c8f20dc7665df1de2a3376321 https://www.encodeproject.org/files/ENCFF759LFL/@@download/ENCFF759LFL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF885PKX bigWig signal p-value ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF367JMT 524325922 ENCODE Processing Pipeline 1aa33a2226dabe16a292184f29f03869 https://www.encodeproject.org/files/ENCFF885PKX/@@download/ENCFF885PKX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF046NMP bigWig signal p-value ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF367JMT, ENCFF555JTW 1179021882 ENCODE Processing Pipeline 7f96a87aa013c380ee9e5277711b3a5c https://www.encodeproject.org/files/ENCFF046NMP/@@download/ENCFF046NMP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF215SSF bigWig fold change over control ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF189CVV, ENCFF366PSQ, ENCFF555JTW 823723574 ENCODE Processing Pipeline 28cbedf5d5aaab80a09dfadfc83d11ef https://www.encodeproject.org/files/ENCFF215SSF/@@download/ENCFF215SSF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF394IDT bigWig fold change over control ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF189CVV, ENCFF367JMT 613572135 ENCODE Processing Pipeline 10e21b2e5037e522f3087f412add87da https://www.encodeproject.org/files/ENCFF394IDT/@@download/ENCFF394IDT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF741CNG bigWig fold change over control ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF189CVV, ENCFF366PSQ, ENCFF367JMT, ENCFF555JTW 1188692622 ENCODE Processing Pipeline f9d9da36060e16ac82eceb0271e8a055 https://www.encodeproject.org/files/ENCFF741CNG/@@download/ENCFF741CNG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF489NKH bigBed narrowPeak replicated peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF804PER 2222873 ENCODE Processing Pipeline f40f19cef647f1e2047f7e6d56101b20 https://www.encodeproject.org/files/ENCFF489NKH/@@download/ENCFF489NKH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF804PER bed narrowPeak replicated peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF167VHW, ENCFF573MCD, ENCFF873KOY 929973 ENCODE Processing Pipeline 8769c47e8a1d4278d614665fe6752354 https://www.encodeproject.org/files/ENCFF804PER/@@download/ENCFF804PER.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF889HHZ bam unfiltered alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF483KSN 2700444327 ENCODE Processing Pipeline 7b74b9aa768140e31a55c8a4520a035d https://www.encodeproject.org/files/ENCFF889HHZ/@@download/ENCFF889HHZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF850YDQ bam unfiltered alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF832UAS 2932474432 ENCODE Processing Pipeline df03c5bb579e3a378477f6dd7a1782a0 https://www.encodeproject.org/files/ENCFF850YDQ/@@download/ENCFF850YDQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF366OLL bam alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF483KSN 1841877140 ENCODE Processing Pipeline 993b6eb8bbf6b4dece5998a5e1b86761 https://www.encodeproject.org/files/ENCFF366OLL/@@download/ENCFF366OLL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF258HLV bam alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF832UAS 2057306178 ENCODE Processing Pipeline ac89db189370bddd2ce86affade8fd1b https://www.encodeproject.org/files/ENCFF258HLV/@@download/ENCFF258HLV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF611LBL bed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF258HLV, ENCFF956XFI 1214724 ENCODE Processing Pipeline e0b32a5041738dc6c706d0d40a39fd85 https://www.encodeproject.org/files/ENCFF611LBL/@@download/ENCFF611LBL.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF304HNI bed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF366OLL, ENCFF837CRH 1110693 ENCODE Processing Pipeline 86fda91c864fe9a1afb6a04d5887f4ba https://www.encodeproject.org/files/ENCFF304HNI/@@download/ENCFF304HNI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF378SIE bed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF258HLV, ENCFF366OLL, ENCFF837CRH, ENCFF956XFI 1586612 ENCODE Processing Pipeline 5170f93f31e5868682969240b014b992 https://www.encodeproject.org/files/ENCFF378SIE/@@download/ENCFF378SIE.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF223LGU bigBed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF611LBL 2904659 ENCODE Processing Pipeline cefd29b8243f0554929cd49c92c0e32b https://www.encodeproject.org/files/ENCFF223LGU/@@download/ENCFF223LGU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF293LLC bigBed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF304HNI 2681010 ENCODE Processing Pipeline 6f8218b1883a2dff8949078eb73baa4e https://www.encodeproject.org/files/ENCFF293LLC/@@download/ENCFF293LLC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF867HWV bigBed narrowPeak peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF378SIE 3600897 ENCODE Processing Pipeline 91266beeca1c630cd7f7821981c573d3 https://www.encodeproject.org/files/ENCFF867HWV/@@download/ENCFF867HWV.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF315ECM bigWig signal p-value ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF258HLV, ENCFF956XFI 789062983 ENCODE Processing Pipeline 9612f8de2e5b0497faaa659480df4445 https://www.encodeproject.org/files/ENCFF315ECM/@@download/ENCFF315ECM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF289KDT bigWig signal p-value ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF366OLL, ENCFF837CRH 657235472 ENCODE Processing Pipeline 87aa9f6c83e96ce28bd18341b0fabe77 https://www.encodeproject.org/files/ENCFF289KDT/@@download/ENCFF289KDT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF184UED bigWig signal p-value ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF258HLV, ENCFF366OLL, ENCFF837CRH, ENCFF956XFI 1050918605 ENCODE Processing Pipeline 7be66cdd9f8397befe09d16ba32ea8cd https://www.encodeproject.org/files/ENCFF184UED/@@download/ENCFF184UED.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF407RRO bigWig fold change over control ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF258HLV, ENCFF956XFI 785887741 ENCODE Processing Pipeline b4a931409744a8f59500e7f0518d691a https://www.encodeproject.org/files/ENCFF407RRO/@@download/ENCFF407RRO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF807JHD bigWig fold change over control ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF366OLL, ENCFF837CRH 741931231 ENCODE Processing Pipeline 9156ed40aa18afe22eafea6afd97bbf8 https://www.encodeproject.org/files/ENCFF807JHD/@@download/ENCFF807JHD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF421NWC bigWig fold change over control ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF258HLV, ENCFF366OLL, ENCFF837CRH, ENCFF956XFI 1418536182 ENCODE Processing Pipeline 1a48507a74e8e1189aa3a3d9a2803489 https://www.encodeproject.org/files/ENCFF421NWC/@@download/ENCFF421NWC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF607FOX bed narrowPeak replicated peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF304HNI, ENCFF378SIE, ENCFF611LBL 971210 ENCODE Processing Pipeline e47375fab8680d1c091ff27de3cf2a75 https://www.encodeproject.org/files/ENCFF607FOX/@@download/ENCFF607FOX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF985NIL bigBed narrowPeak replicated peaks ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF607FOX 2260031 ENCODE Processing Pipeline c6763b45a3c58041a55216a181e4b82f https://www.encodeproject.org/files/ENCFF985NIL/@@download/ENCFF985NIL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002DQJ fastq reads ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 654541701 Bing Ren, UCSD 64070a989fe98bb6ad54464d606ee1b5 SRA:SRR3652861 https://www.encodeproject.org/files/ENCFF002DQJ/@@download/ENCFF002DQJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APW/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQK fastq reads ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 36 single-ended 792551180 Bing Ren, UCSD dee6774f8c81a9bcc80919767112860c SRA:SRR3652862 https://www.encodeproject.org/files/ENCFF002DQK/@@download/ENCFF002DQK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APW/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQM fastq reads ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 3 36 single-ended 783821333 Bing Ren, UCSD aeebca26d38789d54f19a4d8ff098bc7 SRA:SRR3652864 https://www.encodeproject.org/files/ENCFF002DQM/@@download/ENCFF002DQM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APZ/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQN fastq reads ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 772025397 Bing Ren, UCSD ea3d73fa633e637f005c87465e3094d0 SRA:SRR3652865 https://www.encodeproject.org/files/ENCFF002DQN/@@download/ENCFF002DQN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APZ/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQO fastq reads ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 36 single-ended 837874423 Bing Ren, UCSD c1bdf38129e9395a564b4435fbb921dc SRA:SRR3652866 https://www.encodeproject.org/files/ENCFF002DQO/@@download/ENCFF002DQO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APZ/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQQ fastq reads ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 3 36 single-ended 820383226 Bing Ren, UCSD 3b4c3a587e440d6cee9d58ad1ba3ce6a SRA:SRR3652863 https://www.encodeproject.org/files/ENCFF002DQQ/@@download/ENCFF002DQQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APW/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF544ZAB bam alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002DQM, ENCFF002DQN, ENCFF002DQO, ENCFF806TVZ 943863995 ENCODE Processing Pipeline 867c536d18c195183d1d4efef714a37b https://www.encodeproject.org/files/ENCFF544ZAB/@@download/ENCFF544ZAB.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF394ZQB bam alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002DQJ, ENCFF002DQK, ENCFF002DQQ, ENCFF806TVZ 990043128 ENCODE Processing Pipeline a4358378c85ee99e7639df83e7c31ed4 https://www.encodeproject.org/files/ENCFF394ZQB/@@download/ENCFF394ZQB.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF710FLK bed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF394ZQB, ENCFF716BBX 589495 ENCODE Processing Pipeline 48b1cf7b4682c55569d58dc33753713b https://www.encodeproject.org/files/ENCFF710FLK/@@download/ENCFF710FLK.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF303OBF bed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF417WKH, ENCFF544ZAB 1067547 ENCODE Processing Pipeline cb573a39a19d4564a7110bb94e90b171 https://www.encodeproject.org/files/ENCFF303OBF/@@download/ENCFF303OBF.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF310MSQ bigBed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF710FLK 1307049 ENCODE Processing Pipeline 307670d77dab3be71a428c07827571dc https://www.encodeproject.org/files/ENCFF310MSQ/@@download/ENCFF310MSQ.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF524MHO bigBed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF303OBF 2188903 ENCODE Processing Pipeline bba2d77d7a610893139562982bf3d461 https://www.encodeproject.org/files/ENCFF524MHO/@@download/ENCFF524MHO.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF109PZE bed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF394ZQB, ENCFF417WKH, ENCFF544ZAB, ENCFF716BBX 1285816 ENCODE Processing Pipeline d03468755718b94ebcaa52dcf6f7c953 https://www.encodeproject.org/files/ENCFF109PZE/@@download/ENCFF109PZE.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF861RDD bigBed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF109PZE 3163130 ENCODE Processing Pipeline 21a2aab97d61a1f0f9cb56c465f38f1b https://www.encodeproject.org/files/ENCFF861RDD/@@download/ENCFF861RDD.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF248ZSX bigWig signal p-value ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF394ZQB, ENCFF716BBX 465449915 ENCODE Processing Pipeline dd52cafbf39e8e89789302e09c33ccf5 https://www.encodeproject.org/files/ENCFF248ZSX/@@download/ENCFF248ZSX.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF358XOQ bigWig signal p-value ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF417WKH, ENCFF544ZAB 533876996 ENCODE Processing Pipeline d200b1c5e6dd2c1bccbf5563a45b3abc https://www.encodeproject.org/files/ENCFF358XOQ/@@download/ENCFF358XOQ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF878ITI bigWig signal p-value ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF394ZQB, ENCFF417WKH, ENCFF544ZAB, ENCFF716BBX 719461533 ENCODE Processing Pipeline d9610a119573a930283d81c82ed4ad7e https://www.encodeproject.org/files/ENCFF878ITI/@@download/ENCFF878ITI.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF507JVW bigWig fold change over control ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF394ZQB, ENCFF716BBX 474309224 ENCODE Processing Pipeline 4022eba4ac82027d201420895a469df7 https://www.encodeproject.org/files/ENCFF507JVW/@@download/ENCFF507JVW.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF336VYD bigWig fold change over control ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF417WKH, ENCFF544ZAB 463843436 ENCODE Processing Pipeline 784555e7ce49e11dce2bca1130cfa278 https://www.encodeproject.org/files/ENCFF336VYD/@@download/ENCFF336VYD.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF178PAH bigWig fold change over control ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF394ZQB, ENCFF417WKH, ENCFF544ZAB, ENCFF716BBX 911189466 ENCODE Processing Pipeline 20770b70742fc20999b2f3440ac8d3e6 https://www.encodeproject.org/files/ENCFF178PAH/@@download/ENCFF178PAH.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF267YAM bed narrowPeak replicated peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF109PZE, ENCFF303OBF, ENCFF710FLK 466350 ENCODE Processing Pipeline 79ef33eb97547e1ca4e180c0cd142da0 https://www.encodeproject.org/files/ENCFF267YAM/@@download/ENCFF267YAM.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF598ZSP bigBed narrowPeak replicated peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF267YAM 1155107 ENCODE Processing Pipeline 3f5551bb261356b13dee8362a6002dfe https://www.encodeproject.org/files/ENCFF598ZSP/@@download/ENCFF598ZSP.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF201OYV bam unfiltered alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQJ, ENCFF002DQK, ENCFF002DQQ, ENCFF018NEO 2805693597 ENCODE Processing Pipeline e353a19fc60006b358a12f20c471aa14 https://www.encodeproject.org/files/ENCFF201OYV/@@download/ENCFF201OYV.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF724NJR bam unfiltered alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQM, ENCFF002DQN, ENCFF002DQO, ENCFF018NEO 2936167805 ENCODE Processing Pipeline 7ee48ff026ece6a263e0c40aadb33325 https://www.encodeproject.org/files/ENCFF724NJR/@@download/ENCFF724NJR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF511ZHI bam alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQM, ENCFF002DQN, ENCFF002DQO, ENCFF018NEO 943273677 ENCODE Processing Pipeline 16a3932e4bd4332043cf8609a70a3e57 https://www.encodeproject.org/files/ENCFF511ZHI/@@download/ENCFF511ZHI.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF402GZE bam alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQJ, ENCFF002DQK, ENCFF002DQQ, ENCFF018NEO 989436483 ENCODE Processing Pipeline 8572a9ae84d2166f929580c241eaea00 https://www.encodeproject.org/files/ENCFF402GZE/@@download/ENCFF402GZE.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF242ESC bed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF402GZE, ENCFF504TWB 615588 ENCODE Processing Pipeline 25438f1f56844eefaf31246867d857b2 https://www.encodeproject.org/files/ENCFF242ESC/@@download/ENCFF242ESC.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF589GUU bigBed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF242ESC 1344800 ENCODE Processing Pipeline e8fcd104da515576717199b80448c8bb https://www.encodeproject.org/files/ENCFF589GUU/@@download/ENCFF589GUU.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF740BQM bed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF511ZHI, ENCFF963FIQ 991485 ENCODE Processing Pipeline 2d322aa742900bd198ca1ee14f0dca4f https://www.encodeproject.org/files/ENCFF740BQM/@@download/ENCFF740BQM.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF475OIS bed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF402GZE, ENCFF504TWB, ENCFF511ZHI, ENCFF963FIQ 1265581 ENCODE Processing Pipeline 387187e5a780c43a35642a93dbf97ede https://www.encodeproject.org/files/ENCFF475OIS/@@download/ENCFF475OIS.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF691JTA bigBed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF740BQM 2055992 ENCODE Processing Pipeline cb59ee1e71f2d80366064e43a34d4874 https://www.encodeproject.org/files/ENCFF691JTA/@@download/ENCFF691JTA.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF075LJI bigWig signal p-value ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF511ZHI, ENCFF963FIQ 399190096 ENCODE Processing Pipeline 72c69108a2769599d69de7d976853ea3 https://www.encodeproject.org/files/ENCFF075LJI/@@download/ENCFF075LJI.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF100SZY bigBed narrowPeak peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF475OIS 3108085 ENCODE Processing Pipeline 2abccfd6536f8e2507f094dfb072b04e https://www.encodeproject.org/files/ENCFF100SZY/@@download/ENCFF100SZY.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF473JQE bigWig signal p-value ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF402GZE, ENCFF504TWB 466934674 ENCODE Processing Pipeline e69193e97a5e5ad968049f3d9bac2981 https://www.encodeproject.org/files/ENCFF473JQE/@@download/ENCFF473JQE.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF463QJN bigWig fold change over control ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF402GZE, ENCFF504TWB, ENCFF511ZHI, ENCFF963FIQ 918499049 ENCODE Processing Pipeline 79d049463bbdbe1d5134499c1edce318 https://www.encodeproject.org/files/ENCFF463QJN/@@download/ENCFF463QJN.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF388XVI bigWig fold change over control ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF402GZE, ENCFF504TWB 462149651 ENCODE Processing Pipeline 122d2cbcb376a59080cbe372691c5ac4 https://www.encodeproject.org/files/ENCFF388XVI/@@download/ENCFF388XVI.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF891SLM bigWig signal p-value ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF402GZE, ENCFF504TWB, ENCFF511ZHI, ENCFF963FIQ 697461601 ENCODE Processing Pipeline ef3e66b56197aab2e3d4d27ebda8642b https://www.encodeproject.org/files/ENCFF891SLM/@@download/ENCFF891SLM.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF188NSS bigBed narrowPeak replicated peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF906OVX 1304581 ENCODE Processing Pipeline 371aa3475ac981cb78f06c0a77fc4b51 https://www.encodeproject.org/files/ENCFF188NSS/@@download/ENCFF188NSS.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF858HXX bigWig fold change over control ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF511ZHI, ENCFF963FIQ 467979647 ENCODE Processing Pipeline 4be0d2078a247ad3664f88484c696b7b https://www.encodeproject.org/files/ENCFF858HXX/@@download/ENCFF858HXX.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF906OVX bed narrowPeak replicated peaks ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF242ESC, ENCFF475OIS, ENCFF740BQM 539010 ENCODE Processing Pipeline b15a276b9a066d6d3b784cb521a823ef https://www.encodeproject.org/files/ENCFF906OVX/@@download/ENCFF906OVX.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF947YLP fastq reads ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2536111815 Bing Ren, UCSD aba4c845d6a71e9753e058fae5a57b1a SRA:SRR3652898 https://www.encodeproject.org/files/ENCFF947YLP/@@download/ENCFF947YLP.fastq.gz Illumina HiSeq 2000 /files/ENCFF637RQH/ released mild to moderate bottlenecking, inconsistent platforms ENCFF797LPG fastq reads ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2349595790 Bing Ren, UCSD 0e1d9edcefe3ed07ee14424d5161b0bf SRA:SRR3652897 https://www.encodeproject.org/files/ENCFF797LPG/@@download/ENCFF797LPG.fastq.gz Illumina HiSeq 2000 /files/ENCFF324AEZ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF751HOC bam alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF947YLP 1760558403 ENCODE Processing Pipeline 14d4ba29fd8304d39e584801a27f9b28 https://www.encodeproject.org/files/ENCFF751HOC/@@download/ENCFF751HOC.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF089HFY bam alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF797LPG, ENCFF806TVZ 1662470195 ENCODE Processing Pipeline 2227b76fbe5a78e16a4a9813722b0815 https://www.encodeproject.org/files/ENCFF089HFY/@@download/ENCFF089HFY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF693OQJ bigBed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF817XTO 1751115 ENCODE Processing Pipeline 952e66964d5b5c28ae104a1dae45853b https://www.encodeproject.org/files/ENCFF693OQJ/@@download/ENCFF693OQJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF053WSM bed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF089HFY, ENCFF101KOM 541356 ENCODE Processing Pipeline 036ff0585731e4a3c37737b9ae9b1af4 https://www.encodeproject.org/files/ENCFF053WSM/@@download/ENCFF053WSM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF665NGO bed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF089HFY, ENCFF101KOM, ENCFF751HOC 591277 ENCODE Processing Pipeline 3e534b484e2fd08f1f6dbb99aa85cc4d https://www.encodeproject.org/files/ENCFF665NGO/@@download/ENCFF665NGO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF415HEM bigBed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF665NGO 1836401 ENCODE Processing Pipeline b0b384786d4644cca557c256ebb3d596 https://www.encodeproject.org/files/ENCFF415HEM/@@download/ENCFF415HEM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF817XTO bed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF751HOC 544527 ENCODE Processing Pipeline ad80186e8adac96ca7cdb390c47f4dab https://www.encodeproject.org/files/ENCFF817XTO/@@download/ENCFF817XTO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF840YGL bigBed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF053WSM 1751114 ENCODE Processing Pipeline a88b315c978017422a835fe96b40ede7 https://www.encodeproject.org/files/ENCFF840YGL/@@download/ENCFF840YGL.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF790QMR bigWig signal p-value ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF751HOC 641960171 ENCODE Processing Pipeline 62e77fe44c055a8a8b2cfa362d776dab https://www.encodeproject.org/files/ENCFF790QMR/@@download/ENCFF790QMR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF669DFY bigWig signal p-value ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF089HFY, ENCFF101KOM 543060634 ENCODE Processing Pipeline b6c6ced5ed4d38421db20c18cdc151fb https://www.encodeproject.org/files/ENCFF669DFY/@@download/ENCFF669DFY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF675TXK bigWig signal p-value ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF089HFY, ENCFF101KOM, ENCFF751HOC 741777952 ENCODE Processing Pipeline 46c562202bed49cf305355cc2977d001 https://www.encodeproject.org/files/ENCFF675TXK/@@download/ENCFF675TXK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF261PKJ bigWig fold change over control ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF751HOC 638824236 ENCODE Processing Pipeline 892bbd60d023856a16c90c7a6d3b73d7 https://www.encodeproject.org/files/ENCFF261PKJ/@@download/ENCFF261PKJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF039IHS bigWig fold change over control ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF089HFY, ENCFF101KOM 538808365 ENCODE Processing Pipeline a869c53c059bc874642d9510133e426f https://www.encodeproject.org/files/ENCFF039IHS/@@download/ENCFF039IHS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF328RSL bed narrowPeak replicated peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF053WSM, ENCFF665NGO, ENCFF817XTO 662411 ENCODE Processing Pipeline cc41cc0a7af86e017a791c765309cfbc https://www.encodeproject.org/files/ENCFF328RSL/@@download/ENCFF328RSL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF786QPT bigWig fold change over control ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF089HFY, ENCFF101KOM, ENCFF751HOC 938380049 ENCODE Processing Pipeline 06a776f0dd8b1e6109652fa4abd2ccb6 https://www.encodeproject.org/files/ENCFF786QPT/@@download/ENCFF786QPT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF378WEP bigBed narrowPeak replicated peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF328RSL 1573945 ENCODE Processing Pipeline c8285724904758ebaef76018cdbf61bc https://www.encodeproject.org/files/ENCFF378WEP/@@download/ENCFF378WEP.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF652RDL bam unfiltered alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF947YLP 2786493454 ENCODE Processing Pipeline edd41c5f3509e180688182b7017ef7d2 https://www.encodeproject.org/files/ENCFF652RDL/@@download/ENCFF652RDL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF908XFC bam unfiltered alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF797LPG 2598835147 ENCODE Processing Pipeline 55248a1e883d3db69d2bd63854a409d8 https://www.encodeproject.org/files/ENCFF908XFC/@@download/ENCFF908XFC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF895XCG bam alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF947YLP 1760253342 ENCODE Processing Pipeline 7c8171c70b512310158070b94329b6e4 https://www.encodeproject.org/files/ENCFF895XCG/@@download/ENCFF895XCG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF640MMJ bam alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF797LPG 1662185899 ENCODE Processing Pipeline 81292e3b3edd5534171ee7b964b37d6e https://www.encodeproject.org/files/ENCFF640MMJ/@@download/ENCFF640MMJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF365WFA bed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF895XCG, ENCFF904KQI 550694 ENCODE Processing Pipeline 5bb54150a5dd8afe16832a7dcfd798ca https://www.encodeproject.org/files/ENCFF365WFA/@@download/ENCFF365WFA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF421MMN bed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF640MMJ, ENCFF814RAT 551255 ENCODE Processing Pipeline a992835463ec6658260a218a967b9e2b https://www.encodeproject.org/files/ENCFF421MMN/@@download/ENCFF421MMN.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF698FHS bed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF640MMJ, ENCFF814RAT, ENCFF895XCG, ENCFF904KQI 607407 ENCODE Processing Pipeline 1eaa03647eb0703989a1c7fca042b449 https://www.encodeproject.org/files/ENCFF698FHS/@@download/ENCFF698FHS.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF269NPW bigBed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF365WFA 1764680 ENCODE Processing Pipeline 012771631bbf976f8061e2f33fff46b5 https://www.encodeproject.org/files/ENCFF269NPW/@@download/ENCFF269NPW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF360QET bigBed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF421MMN 1764851 ENCODE Processing Pipeline bee77ad6d06520deeec8f7c85b510624 https://www.encodeproject.org/files/ENCFF360QET/@@download/ENCFF360QET.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF866OAH bigBed narrowPeak peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF698FHS 1854435 ENCODE Processing Pipeline ab20d0ef04f117c30eb4270d1436d19f https://www.encodeproject.org/files/ENCFF866OAH/@@download/ENCFF866OAH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF911MYD bigWig signal p-value ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF895XCG, ENCFF904KQI 593836710 ENCODE Processing Pipeline a8d1bbd5964d9d6a46ec797513a2305d https://www.encodeproject.org/files/ENCFF911MYD/@@download/ENCFF911MYD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF914USU bigWig signal p-value ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF640MMJ, ENCFF814RAT 504796234 ENCODE Processing Pipeline 455d24f4e29b9069288239c806a0457e https://www.encodeproject.org/files/ENCFF914USU/@@download/ENCFF914USU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF496BWR bigWig signal p-value ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF640MMJ, ENCFF814RAT, ENCFF895XCG, ENCFF904KQI 1002335173 ENCODE Processing Pipeline 903a707bb6c1a071109c3cc42d5471ac https://www.encodeproject.org/files/ENCFF496BWR/@@download/ENCFF496BWR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF749ETG bigWig fold change over control ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF895XCG, ENCFF904KQI 612543789 ENCODE Processing Pipeline b174cc804926c4a789d7aebfa2cad3a7 https://www.encodeproject.org/files/ENCFF749ETG/@@download/ENCFF749ETG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF979DYC bigWig fold change over control ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF640MMJ, ENCFF814RAT 565053819 ENCODE Processing Pipeline 7928642f63b708e1e72956417634aba1 https://www.encodeproject.org/files/ENCFF979DYC/@@download/ENCFF979DYC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF293PAY bigWig fold change over control ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF640MMJ, ENCFF814RAT, ENCFF895XCG, ENCFF904KQI 1052638974 ENCODE Processing Pipeline 2d6f999761f841c756cf25116fb47806 https://www.encodeproject.org/files/ENCFF293PAY/@@download/ENCFF293PAY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF791AVG bed narrowPeak replicated peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF365WFA, ENCFF421MMN, ENCFF698FHS 682720 ENCODE Processing Pipeline 24a6287ec3a112d27e4e598e83bbfdb6 https://www.encodeproject.org/files/ENCFF791AVG/@@download/ENCFF791AVG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF970WAZ bigBed narrowPeak replicated peaks ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF791AVG 1605627 ENCODE Processing Pipeline 7818df47d0c16fc02e65fbc1dfa45bce https://www.encodeproject.org/files/ENCFF970WAZ/@@download/ENCFF970WAZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001NYB bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NYM 454765050 Michael Snyder, Stanford 77761fb4390780d01bae3e7fe30eb80a https://www.encodeproject.org/files/ENCFF001NYB/@@download/ENCFF001NYB.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYC bigBed narrowPeak peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKB 813765 Michael Snyder, Stanford aa956714063938cdba0b8a492b3df101 https://www.encodeproject.org/files/ENCFF001NYC/@@download/ENCFF001NYC.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYD bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NYQ 497166887 Michael Snyder, Stanford aae0c46c9d2da70689935a98b778365d https://www.encodeproject.org/files/ENCFF001NYD/@@download/ENCFF001NYD.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYG bigWig signal ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYB, ENCFF001NYD 340216529 Michael Snyder, Stanford 514be36d09b1bac1f1faf22e8c7ab46b https://www.encodeproject.org/files/ENCFF001NYG/@@download/ENCFF001NYG.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYM fastq reads ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 869695303 Michael Snyder, Stanford 4f84eda57d556e64db566a5afaf98e97 https://www.encodeproject.org/files/ENCFF001NYM/@@download/ENCFF001NYM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYQ fastq reads ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 969057436 Michael Snyder, Stanford 76c15821a69d07fd9835b05603498917 https://www.encodeproject.org/files/ENCFF001NYQ/@@download/ENCFF001NYQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKB bed narrowPeak peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYB, ENCFF001NYD 337689 Michael Snyder, Stanford 7a24fd77bec2b89b94fadd2c1d3ea810 https://www.encodeproject.org/files/ENCFF001YKB/@@download/ENCFF001YKB.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF812JVB bam unfiltered alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYQ, ENCFF018NEO 1112545065 ENCODE Processing Pipeline 9bb41770334e75bf12e96db3abd1a90d https://www.encodeproject.org/files/ENCFF812JVB/@@download/ENCFF812JVB.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF906LVL bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYQ, ENCFF018NEO 801826294 ENCODE Processing Pipeline a47fda7bd69d364dc655bfd785738738 https://www.encodeproject.org/files/ENCFF906LVL/@@download/ENCFF906LVL.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF764ZGJ bam unfiltered alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYM, ENCFF018NEO 1000505676 ENCODE Processing Pipeline 96ed6daaec0c1fbf46f2f59ae2544fe1 https://www.encodeproject.org/files/ENCFF764ZGJ/@@download/ENCFF764ZGJ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF956XJP bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYM, ENCFF018NEO 729332962 ENCODE Processing Pipeline 0541210e16251f367d3cc52573fd3afd https://www.encodeproject.org/files/ENCFF956XJP/@@download/ENCFF956XJP.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF996CJF bigBed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF541QIH 11465987 ENCODE Processing Pipeline 870551d5d5fc3b476ac5f83d3b3f7d5b https://www.encodeproject.org/files/ENCFF996CJF/@@download/ENCFF996CJF.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF645BFP bigWig signal p-value ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF956XJP 324481150 ENCODE Processing Pipeline e7806f45af6147839a9727a9f11c9bff https://www.encodeproject.org/files/ENCFF645BFP/@@download/ENCFF645BFP.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF193ZKP bed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF956XJP 7242329 ENCODE Processing Pipeline 398f65c7a0da69afec7f94e6170e3a15 https://www.encodeproject.org/files/ENCFF193ZKP/@@download/ENCFF193ZKP.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF015EOB bed narrowPeak conservative idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF193ZKP, ENCFF212LAR, ENCFF541QIH, ENCFF547MET 340996 ENCODE Processing Pipeline 05e213ce35dedbf7695f881c97d5e65c https://www.encodeproject.org/files/ENCFF015EOB/@@download/ENCFF015EOB.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF130HOV bigWig signal p-value ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF906LVL 325652158 ENCODE Processing Pipeline 7ed31f0c17358192f98835205ca13852 https://www.encodeproject.org/files/ENCFF130HOV/@@download/ENCFF130HOV.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF587NFU bigWig fold change over control ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF906LVL, ENCFF956XJP 501626569 ENCODE Processing Pipeline cfa85ae048863c3b9c259888c540c6b9 https://www.encodeproject.org/files/ENCFF587NFU/@@download/ENCFF587NFU.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF801VPE bigBed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF193ZKP 11049384 ENCODE Processing Pipeline 22c3937f16c91b25b56cd340a39866d8 https://www.encodeproject.org/files/ENCFF801VPE/@@download/ENCFF801VPE.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF568LBX bigBed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF212LAR 11249188 ENCODE Processing Pipeline ebbccbd6dd86ba5a8cdc4b3f3c58105b https://www.encodeproject.org/files/ENCFF568LBX/@@download/ENCFF568LBX.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF074BXT bigWig signal p-value ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF906LVL, ENCFF956XJP 313190240 ENCODE Processing Pipeline 42b88f373f5c5fdbc282fc28ccdae876 https://www.encodeproject.org/files/ENCFF074BXT/@@download/ENCFF074BXT.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF331MUQ bigWig fold change over control ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF906LVL 309590854 ENCODE Processing Pipeline 84fcb565320d36f48b3e798ae411bf8b https://www.encodeproject.org/files/ENCFF331MUQ/@@download/ENCFF331MUQ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF691LQN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF015EOB 894832 ENCODE Processing Pipeline 0a5bee1a83e62f4b69d2da4d6968b05c https://www.encodeproject.org/files/ENCFF691LQN/@@download/ENCFF691LQN.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF950CJS bed narrowPeak optimal idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF193ZKP, ENCFF212LAR, ENCFF541QIH, ENCFF547MET 382232 ENCODE Processing Pipeline 4365e229fa9904fa8d0b9c6812ea275c https://www.encodeproject.org/files/ENCFF950CJS/@@download/ENCFF950CJS.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF239XXP bigWig fold change over control ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF956XJP 281252529 ENCODE Processing Pipeline b86f110f1470b57b796e198ed491fcfe https://www.encodeproject.org/files/ENCFF239XXP/@@download/ENCFF239XXP.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF541QIH bed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF906LVL 7156628 ENCODE Processing Pipeline 31a924bde9dc83272575d65d60bbca85 https://www.encodeproject.org/files/ENCFF541QIH/@@download/ENCFF541QIH.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF212LAR bed narrowPeak peaks and background as input for IDR ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF906LVL, ENCFF956XJP 7293824 ENCODE Processing Pipeline ccf118321468dfd990d7c7d5bd31e856 https://www.encodeproject.org/files/ENCFF212LAR/@@download/ENCFF212LAR.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF122TYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF950CJS 981270 ENCODE Processing Pipeline d7124d48a428c3c6397b54a6e9384888 https://www.encodeproject.org/files/ENCFF122TYQ/@@download/ENCFF122TYQ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001KNK bam alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KNX 408574634 Bing Ren, UCSD ee983fbbd5293110bff191971595f5f9 https://www.encodeproject.org/files/ENCFF001KNK/@@download/ENCFF001KNK.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KNN bam alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KNY 677316777 Bing Ren, UCSD 17c647f8a2a92a14300da8de1b49a769 https://www.encodeproject.org/files/ENCFF001KNN/@@download/ENCFF001KNN.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KNO bigWig signal ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001KNK, ENCFF001KNN 73792129 Bing Ren, UCSD 9bae0e9a1e05a2594431e2d301a4d788 https://www.encodeproject.org/files/ENCFF001KNO/@@download/ENCFF001KNO.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KNX fastq reads ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 870408468 Bing Ren, UCSD 0b4a7eb31fa79a735b1cf84977dc162f https://www.encodeproject.org/files/ENCFF001KNX/@@download/ENCFF001KNX.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF001KNY fastq reads ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 829631109 Bing Ren, UCSD 727586f44737f9e088fe23ca40c74a4e https://www.encodeproject.org/files/ENCFF001KNY/@@download/ENCFF001KNY.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF321VSJ bam unfiltered alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KNY, ENCFF806TVZ 955518783 J. Michael Cherry, Stanford ad5d3701d2ccd89a90399c37ae0bbfd7 https://www.encodeproject.org/files/ENCFF321VSJ/@@download/ENCFF321VSJ.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF948LSP bam unfiltered alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KNX, ENCFF806TVZ 957554218 J. Michael Cherry, Stanford 6ee7ada8f417191cd2a7ec2738a00efa https://www.encodeproject.org/files/ENCFF948LSP/@@download/ENCFF948LSP.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF465JMB bam alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KNY, ENCFF018NEO 512864755 ENCODE Processing Pipeline 31d9a2fa334175e48aa6073192ed0a2e https://www.encodeproject.org/files/ENCFF465JMB/@@download/ENCFF465JMB.bam mm10 released low read length, low read depth insufficient read depth ENCFF515GCB bam alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KNX, ENCFF018NEO 416651403 ENCODE Processing Pipeline a40d3aa48f5392616ea46d81577dca9d https://www.encodeproject.org/files/ENCFF515GCB/@@download/ENCFF515GCB.bam mm10 released low read length, low read depth insufficient read depth ENCFF598XHF bam unfiltered alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KNY, ENCFF018NEO 957140221 ENCODE Processing Pipeline e70503ce593dd6478457c880271c43f1 https://www.encodeproject.org/files/ENCFF598XHF/@@download/ENCFF598XHF.bam mm10 released low read length, low read depth insufficient read depth ENCFF722ZOT bam unfiltered alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KNX, ENCFF018NEO 958496219 ENCODE Processing Pipeline 7c521f9307ed5fbffde92f95bcdbcd18 https://www.encodeproject.org/files/ENCFF722ZOT/@@download/ENCFF722ZOT.bam mm10 released low read length, low read depth insufficient read depth ENCFF101OYN fastq reads ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2420995796 Bing Ren, UCSD d163700ffb3ca680a806adc340ef6404 SRA:SRR3651542 https://www.encodeproject.org/files/ENCFF101OYN/@@download/ENCFF101OYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF369BJC fastq reads ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2008684935 Bing Ren, UCSD 146402f1c76fea976a5353563619a526 SRA:SRR3651543 https://www.encodeproject.org/files/ENCFF369BJC/@@download/ENCFF369BJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released mild to moderate bottlenecking, inconsistent platforms ENCFF168EGN bam alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF101OYN, ENCFF806TVZ 1832293676 ENCODE Processing Pipeline 4d1997cebd961a0b4783e99a8f0d882e https://www.encodeproject.org/files/ENCFF168EGN/@@download/ENCFF168EGN.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF585ZSP bam alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF369BJC, ENCFF806TVZ 1554217882 ENCODE Processing Pipeline c082f8bb91c0fdad06e333c709e19f27 https://www.encodeproject.org/files/ENCFF585ZSP/@@download/ENCFF585ZSP.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF576KQX bed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF168EGN, ENCFF455EJT, ENCFF585ZSP, ENCFF844LBC 1881476 ENCODE Processing Pipeline 379368ee439b4cedf15b8912ec969695 https://www.encodeproject.org/files/ENCFF576KQX/@@download/ENCFF576KQX.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF631XUV bed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF168EGN, ENCFF455EJT 1609568 ENCODE Processing Pipeline 3ce04f8621fa41456735e4b78408698d https://www.encodeproject.org/files/ENCFF631XUV/@@download/ENCFF631XUV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF417PFE bed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF585ZSP, ENCFF844LBC 1422069 ENCODE Processing Pipeline bb4580f29d75ddf8339e725dce175ea4 https://www.encodeproject.org/files/ENCFF417PFE/@@download/ENCFF417PFE.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF209QXE bigBed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF631XUV 3547142 ENCODE Processing Pipeline d0fdc0138e0d3301e1da5001907cb40b https://www.encodeproject.org/files/ENCFF209QXE/@@download/ENCFF209QXE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF517GYM bigBed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF417PFE 3269029 ENCODE Processing Pipeline 7b997af8ddf38fe405dc649b4e23a09e https://www.encodeproject.org/files/ENCFF517GYM/@@download/ENCFF517GYM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF704XJD bigBed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF576KQX 4090728 ENCODE Processing Pipeline ba5909b9abb71653aaf2aabc48ce745f https://www.encodeproject.org/files/ENCFF704XJD/@@download/ENCFF704XJD.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF566XTA bigWig signal p-value ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF168EGN, ENCFF455EJT 499472819 ENCODE Processing Pipeline 690ebd155b0ed87c7f8eda76b2e808b8 https://www.encodeproject.org/files/ENCFF566XTA/@@download/ENCFF566XTA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF452ETA bigWig signal p-value ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF585ZSP, ENCFF844LBC 587549574 ENCODE Processing Pipeline 7fe0ba05dec6789cb259b462f3927c18 https://www.encodeproject.org/files/ENCFF452ETA/@@download/ENCFF452ETA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF095JJK bigWig signal p-value ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF168EGN, ENCFF455EJT, ENCFF585ZSP, ENCFF844LBC 1182085727 ENCODE Processing Pipeline 760560ba6bb122f1193e3947ba7dfb9e https://www.encodeproject.org/files/ENCFF095JJK/@@download/ENCFF095JJK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF190INI bigWig fold change over control ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF168EGN, ENCFF455EJT 617634962 ENCODE Processing Pipeline 2fa557a710929b6a25513b58d86a325b https://www.encodeproject.org/files/ENCFF190INI/@@download/ENCFF190INI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF090QTC bed narrowPeak replicated peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF417PFE, ENCFF576KQX, ENCFF631XUV 1112464 ENCODE Processing Pipeline 329940e96999944ed9c2713cd6d41aaf https://www.encodeproject.org/files/ENCFF090QTC/@@download/ENCFF090QTC.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF579KVP bigWig fold change over control ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF168EGN, ENCFF455EJT, ENCFF585ZSP, ENCFF844LBC 1157103498 ENCODE Processing Pipeline 253220176011dcdd81bc68f12b3f6a73 https://www.encodeproject.org/files/ENCFF579KVP/@@download/ENCFF579KVP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF070XSQ bigWig fold change over control ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF585ZSP, ENCFF844LBC 527505008 ENCODE Processing Pipeline 1d4aad3af61cfc21575a6c8cabaa3a6c https://www.encodeproject.org/files/ENCFF070XSQ/@@download/ENCFF070XSQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF873KXC bigBed narrowPeak replicated peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF090QTC 2581554 ENCODE Processing Pipeline 3815e9c52400e1b55f0044a572a54217 https://www.encodeproject.org/files/ENCFF873KXC/@@download/ENCFF873KXC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF517DLN bam unfiltered alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF369BJC 2364271696 ENCODE Processing Pipeline 1a35979c7bfe8507e840b6f1fa897691 https://www.encodeproject.org/files/ENCFF517DLN/@@download/ENCFF517DLN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF972KWO bam unfiltered alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF101OYN 2813745770 ENCODE Processing Pipeline 30465fa214aa2e5815357198bcb467c0 https://www.encodeproject.org/files/ENCFF972KWO/@@download/ENCFF972KWO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF150FTG bam alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF369BJC 1553913250 ENCODE Processing Pipeline e53f31c3e1972df8a02af3b6b253aee9 https://www.encodeproject.org/files/ENCFF150FTG/@@download/ENCFF150FTG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF192YAM bam alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF101OYN 1831942238 ENCODE Processing Pipeline 69df3fa703b6ab81cfc47bb761ef096a https://www.encodeproject.org/files/ENCFF192YAM/@@download/ENCFF192YAM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF725SCF bed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF192YAM 1611953 ENCODE Processing Pipeline 80384ac8eb828360712785757b5486e3 https://www.encodeproject.org/files/ENCFF725SCF/@@download/ENCFF725SCF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF940RJZ bed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF150FTG 1445751 ENCODE Processing Pipeline b6fd459ca474833ee871e788a7307426 https://www.encodeproject.org/files/ENCFF940RJZ/@@download/ENCFF940RJZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF442IVL bed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF150FTG, ENCFF160VSE, ENCFF192YAM 1901313 ENCODE Processing Pipeline b9265a9f951007ff6504ba58e9c9140f https://www.encodeproject.org/files/ENCFF442IVL/@@download/ENCFF442IVL.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF371EQB bigBed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF725SCF 3565687 ENCODE Processing Pipeline 80d6c484c18daad76d9694a0bba3b96f https://www.encodeproject.org/files/ENCFF371EQB/@@download/ENCFF371EQB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF989DEP bigBed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF940RJZ 3338098 ENCODE Processing Pipeline 88ba22fef9da633349124e2e2e4e3778 https://www.encodeproject.org/files/ENCFF989DEP/@@download/ENCFF989DEP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF985NNM bigBed narrowPeak peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF442IVL 4137821 ENCODE Processing Pipeline 53410d586d29bd143d8d31723076188a https://www.encodeproject.org/files/ENCFF985NNM/@@download/ENCFF985NNM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF056GAT bigWig signal p-value ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF192YAM 678648109 ENCODE Processing Pipeline cbc42903297e0e411a8499948e2dea3d https://www.encodeproject.org/files/ENCFF056GAT/@@download/ENCFF056GAT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF262KOV bigWig signal p-value ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF150FTG 621509330 ENCODE Processing Pipeline a9032649384b1ae5dab6dbe11fa26131 https://www.encodeproject.org/files/ENCFF262KOV/@@download/ENCFF262KOV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF084RSZ bigWig signal p-value ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF150FTG, ENCFF160VSE, ENCFF192YAM 1052663373 ENCODE Processing Pipeline 065b17e87184e5c90ca3991b2b5e4b99 https://www.encodeproject.org/files/ENCFF084RSZ/@@download/ENCFF084RSZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF528BPG bigWig fold change over control ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF192YAM 662198364 ENCODE Processing Pipeline e899ffb965882aeca9854dda355bf584 https://www.encodeproject.org/files/ENCFF528BPG/@@download/ENCFF528BPG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF366NPB bigWig fold change over control ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF150FTG 652588064 ENCODE Processing Pipeline f9e9dc74cf2360f02c27db6c093fb21e https://www.encodeproject.org/files/ENCFF366NPB/@@download/ENCFF366NPB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF768XVB bigWig fold change over control ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF150FTG, ENCFF160VSE, ENCFF192YAM 1259894662 ENCODE Processing Pipeline 744df6368e3629e0e64177a29bb2d36b https://www.encodeproject.org/files/ENCFF768XVB/@@download/ENCFF768XVB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF840MRK bed narrowPeak replicated peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF442IVL, ENCFF725SCF, ENCFF940RJZ 1166430 ENCODE Processing Pipeline 48f21c253fb0ababd09881f76989bafd https://www.encodeproject.org/files/ENCFF840MRK/@@download/ENCFF840MRK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF338IHF bigBed narrowPeak replicated peaks ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF840MRK 2673311 ENCODE Processing Pipeline cf8e3b20fa7ee1512419e5d39abb4d72 https://www.encodeproject.org/files/ENCFF338IHF/@@download/ENCFF338IHF.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001NBK bigBed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001YHP 2278804 Michael Snyder, Stanford 312c83bb7ec62b61dc9796a7157fada5 https://www.encodeproject.org/files/ENCFF001NBK/@@download/ENCFF001NBK.bigBed mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBL fastq reads ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1094607145 Michael Snyder, Stanford c265ebeb60e6d7600758fd07fa00fcda https://www.encodeproject.org/files/ENCFF001NBL/@@download/ENCFF001NBL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTS/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBM bam alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF001NBL 606340316 Michael Snyder, Stanford ca3869a94e6aee845cfcbf2eba657a5d https://www.encodeproject.org/files/ENCFF001NBM/@@download/ENCFF001NBM.bam mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBO fastq reads ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 892856390 Michael Snyder, Stanford e42c6088c9ffc5e8f0bd3134ecd4ab5f https://www.encodeproject.org/files/ENCFF001NBO/@@download/ENCFF001NBO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NTU/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBQ bam alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF001NBO 497974076 Michael Snyder, Stanford 74cb77f55f7276e61ea17e70f7402e47 https://www.encodeproject.org/files/ENCFF001NBQ/@@download/ENCFF001NBQ.bam mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001NBR bigWig signal ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NBM, ENCFF001NBQ 234834910 Michael Snyder, Stanford 565eca9143e36a9d5bb155adeeab1302 https://www.encodeproject.org/files/ENCFF001NBR/@@download/ENCFF001NBR.bigWig mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF001YHP bed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001NBM, ENCFF001NBQ 998300 Michael Snyder, Stanford 8e2bf7aadd5c2c908576e6b4b178b05e https://www.encodeproject.org/files/ENCFF001YHP/@@download/ENCFF001YHP.bed.gz mm9 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF641ZKG bam unfiltered alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NBO, ENCFF018NEO 982541997 ENCODE Processing Pipeline 0f415d2c4f9510aa0f386cde7a7b349b https://www.encodeproject.org/files/ENCFF641ZKG/@@download/ENCFF641ZKG.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF215JUO bam unfiltered alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NBL, ENCFF018NEO 1213992802 ENCODE Processing Pipeline 34fa24ceb1ee69c7c2ab990b9c048585 https://www.encodeproject.org/files/ENCFF215JUO/@@download/ENCFF215JUO.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF953ENB bam alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NBO, ENCFF018NEO 662887267 ENCODE Processing Pipeline 8516666a3ae9f49182006226f4d79a35 https://www.encodeproject.org/files/ENCFF953ENB/@@download/ENCFF953ENB.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF080OTQ bam alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NBL, ENCFF018NEO 869191139 ENCODE Processing Pipeline a1ae3d08aea6ccec022b8fd081d95d30 https://www.encodeproject.org/files/ENCFF080OTQ/@@download/ENCFF080OTQ.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF343JQZ bed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF080OTQ, ENCFF277LUN, ENCFF479KKI 3486213 ENCODE Processing Pipeline 49d8309be99f62f06462a754631b2e34 https://www.encodeproject.org/files/ENCFF343JQZ/@@download/ENCFF343JQZ.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF877QDT bed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF953ENB 2576455 ENCODE Processing Pipeline 2ab5f2fb899559d8a50e3489222e2d35 https://www.encodeproject.org/files/ENCFF877QDT/@@download/ENCFF877QDT.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF028IQL bed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF080OTQ, ENCFF277LUN, ENCFF479KKI, ENCFF953ENB 2832723 ENCODE Processing Pipeline c6654217f867a95c9ff9988dfb516555 https://www.encodeproject.org/files/ENCFF028IQL/@@download/ENCFF028IQL.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF051YLI bigBed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF343JQZ 7956881 ENCODE Processing Pipeline 820e1036f387c093c26b4c49d9236d17 https://www.encodeproject.org/files/ENCFF051YLI/@@download/ENCFF051YLI.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF241EZC bigBed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF877QDT 6219595 ENCODE Processing Pipeline bd605f7b163e8d18ec406910b74e8a72 https://www.encodeproject.org/files/ENCFF241EZC/@@download/ENCFF241EZC.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF983NXC bigBed narrowPeak peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF028IQL 6429979 ENCODE Processing Pipeline 44920c2eff2869606adaf3e347ba1eef https://www.encodeproject.org/files/ENCFF983NXC/@@download/ENCFF983NXC.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF574MJD bigWig signal p-value ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF080OTQ, ENCFF277LUN, ENCFF479KKI 362710022 ENCODE Processing Pipeline 37e7e80a28a780932ad6d1e99c9c4471 https://www.encodeproject.org/files/ENCFF574MJD/@@download/ENCFF574MJD.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF639BFO bigWig signal p-value ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF953ENB 404150678 ENCODE Processing Pipeline 31a5c257680bf79ea6280802b3098c06 https://www.encodeproject.org/files/ENCFF639BFO/@@download/ENCFF639BFO.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF564SQT bigWig signal p-value ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF080OTQ, ENCFF277LUN, ENCFF479KKI, ENCFF953ENB 538075523 ENCODE Processing Pipeline 8385a6411ddebb9209e8fbc0b468af72 https://www.encodeproject.org/files/ENCFF564SQT/@@download/ENCFF564SQT.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF231KXA bigWig fold change over control ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 ENCFF080OTQ, ENCFF277LUN, ENCFF479KKI 424978432 ENCODE Processing Pipeline 905f7be9c68193f1af128dc722865914 https://www.encodeproject.org/files/ENCFF231KXA/@@download/ENCFF231KXA.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF345BUV bigWig fold change over control ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF953ENB 373151662 ENCODE Processing Pipeline 2e0cdf1583d566c62cd1498fef1bafa9 https://www.encodeproject.org/files/ENCFF345BUV/@@download/ENCFF345BUV.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF981EVL bigWig fold change over control ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF080OTQ, ENCFF277LUN, ENCFF479KKI, ENCFF953ENB 628486239 ENCODE Processing Pipeline d34971d5a8c16f110d1d13f0219687b6 https://www.encodeproject.org/files/ENCFF981EVL/@@download/ENCFF981EVL.bigWig mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF049CRM bed narrowPeak replicated peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF028IQL, ENCFF343JQZ, ENCFF877QDT 2625776 ENCODE Processing Pipeline ed18f1bd985af1db28844507a987136c https://www.encodeproject.org/files/ENCFF049CRM/@@download/ENCFF049CRM.bed.gz mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF839EJI bigBed narrowPeak replicated peaks ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF049CRM 4684589 ENCODE Processing Pipeline 961c21c82eb6d9d4f3839cbd73126c08 https://www.encodeproject.org/files/ENCFF839EJI/@@download/ENCFF839EJI.bigBed mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF002AGD fastq reads ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1489140998 Bing Ren, UCSD 94d24c7308a9f510a5600a2a7e9e5665 SRA:SRR3651185 https://www.encodeproject.org/files/ENCFF002AGD/@@download/ENCFF002AGD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQA/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF002AGG fastq reads ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1251449374 Bing Ren, UCSD 8dbfbf763c8d8e2c246c5206179a1f92 SRA:SRR3651186 https://www.encodeproject.org/files/ENCFF002AGG/@@download/ENCFF002AGG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APX/ released low read length, control low read depth, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF582PWB bam alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGD, ENCFF806TVZ 1171345105 ENCODE Processing Pipeline 281f3cd6c6d94f3e3c0420092187bc67 https://www.encodeproject.org/files/ENCFF582PWB/@@download/ENCFF582PWB.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF992OQQ bam alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGG, ENCFF806TVZ 997303276 ENCODE Processing Pipeline 42a6e2a5ff67f0f9bb26d9cee8af3582 https://www.encodeproject.org/files/ENCFF992OQQ/@@download/ENCFF992OQQ.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF490QXH bed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF775YLK, ENCFF992OQQ 762825 ENCODE Processing Pipeline a4648508069ea15b98967aedee90993c https://www.encodeproject.org/files/ENCFF490QXH/@@download/ENCFF490QXH.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF552KOY bed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF582PWB, ENCFF775YLK 899434 ENCODE Processing Pipeline 9997f0ca0e270da319ac881d9893291e https://www.encodeproject.org/files/ENCFF552KOY/@@download/ENCFF552KOY.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF210KIT bed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF582PWB, ENCFF775YLK, ENCFF992OQQ 696781 ENCODE Processing Pipeline 82420c2d86ba181d8043099b1de7522f https://www.encodeproject.org/files/ENCFF210KIT/@@download/ENCFF210KIT.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF342KFJ bigBed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF490QXH 1642283 ENCODE Processing Pipeline 8bc17aabad94cf43bf7d911a6c2b17c6 https://www.encodeproject.org/files/ENCFF342KFJ/@@download/ENCFF342KFJ.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF867RMG bigBed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF552KOY 1985982 ENCODE Processing Pipeline d77fc8e82c30372be6f5a312d7e87c0f https://www.encodeproject.org/files/ENCFF867RMG/@@download/ENCFF867RMG.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF946JKK bigBed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF210KIT 1830189 ENCODE Processing Pipeline f03dca3c626c501f32870d111b0c7c61 https://www.encodeproject.org/files/ENCFF946JKK/@@download/ENCFF946JKK.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF910GPR bigWig signal p-value ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF775YLK, ENCFF992OQQ 539617393 ENCODE Processing Pipeline ae56561a60f4db9ae1102e859748b1cc https://www.encodeproject.org/files/ENCFF910GPR/@@download/ENCFF910GPR.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF296WJW bigWig signal p-value ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF582PWB, ENCFF775YLK 557763094 ENCODE Processing Pipeline aff9d035e04019b680a11f0b6785a732 https://www.encodeproject.org/files/ENCFF296WJW/@@download/ENCFF296WJW.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF868HQE bigWig signal p-value ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF582PWB, ENCFF775YLK, ENCFF992OQQ 732795401 ENCODE Processing Pipeline 11eea134a0dfec66fd8f7a3ec1f26bc0 https://www.encodeproject.org/files/ENCFF868HQE/@@download/ENCFF868HQE.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF579DBC bigWig fold change over control ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF775YLK, ENCFF992OQQ 516225726 ENCODE Processing Pipeline f85cb18cdd35626132e030d87ee307ac https://www.encodeproject.org/files/ENCFF579DBC/@@download/ENCFF579DBC.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF904LIQ bigWig fold change over control ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF582PWB, ENCFF775YLK 558002507 ENCODE Processing Pipeline cc88df5a4fd118e57ca714db64331317 https://www.encodeproject.org/files/ENCFF904LIQ/@@download/ENCFF904LIQ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF831TYT bed narrowPeak replicated peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF210KIT, ENCFF490QXH, ENCFF552KOY 437695 ENCODE Processing Pipeline 052280623d2182464dfbb5fdeffca05c https://www.encodeproject.org/files/ENCFF831TYT/@@download/ENCFF831TYT.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF709VOY bigWig fold change over control ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF582PWB, ENCFF775YLK, ENCFF992OQQ 827300578 ENCODE Processing Pipeline 7f4bba7f91df6c602dc2bd6f2ca9f0c9 https://www.encodeproject.org/files/ENCFF709VOY/@@download/ENCFF709VOY.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF052POL bigBed narrowPeak replicated peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF831TYT 1038555 ENCODE Processing Pipeline f7256a30aee90e4f535fc07e46d941ad https://www.encodeproject.org/files/ENCFF052POL/@@download/ENCFF052POL.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF751CRP bam unfiltered alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGG, ENCFF018NEO 1381923995 ENCODE Processing Pipeline 29202a2024d0eb67aa5742b048a89852 https://www.encodeproject.org/files/ENCFF751CRP/@@download/ENCFF751CRP.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF251MOF bam unfiltered alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGD, ENCFF018NEO 1636982700 ENCODE Processing Pipeline 7ea64894ebcb673e330f9643a2c091c5 https://www.encodeproject.org/files/ENCFF251MOF/@@download/ENCFF251MOF.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF446QOS bam alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGG, ENCFF018NEO 997090575 ENCODE Processing Pipeline 6a909315361a18c73f1243087d39d42b https://www.encodeproject.org/files/ENCFF446QOS/@@download/ENCFF446QOS.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF508LDF bam alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGD, ENCFF018NEO 1171072627 ENCODE Processing Pipeline 194a07ed8b9382591c40b8d1b4b0f646 https://www.encodeproject.org/files/ENCFF508LDF/@@download/ENCFF508LDF.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF013JOF bed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF446QOS, ENCFF831XWF, ENCFF911DNW 760136 ENCODE Processing Pipeline 0c08b95b1e492b4795f71b60f7ff7bfd https://www.encodeproject.org/files/ENCFF013JOF/@@download/ENCFF013JOF.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF758OJA bed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF446QOS, ENCFF508LDF, ENCFF831XWF, ENCFF911DNW 617964 ENCODE Processing Pipeline 8f54a6aadd12a957480ec9ef84a1156b https://www.encodeproject.org/files/ENCFF758OJA/@@download/ENCFF758OJA.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF444MFZ bed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF508LDF, ENCFF911DNW 483524 ENCODE Processing Pipeline 82d46761f41d64a0719d60670d747746 https://www.encodeproject.org/files/ENCFF444MFZ/@@download/ENCFF444MFZ.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF498HRC bigBed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF013JOF 1643662 ENCODE Processing Pipeline 13b435da7c351b138bc14aeee444e9b5 https://www.encodeproject.org/files/ENCFF498HRC/@@download/ENCFF498HRC.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF295IYX bigBed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444MFZ 1082185 ENCODE Processing Pipeline 6d472850920aa3cb592157896ad4185a https://www.encodeproject.org/files/ENCFF295IYX/@@download/ENCFF295IYX.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF744BDC bigBed narrowPeak peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF758OJA 1637491 ENCODE Processing Pipeline ba0e39da8994be84585920209a0b50bd https://www.encodeproject.org/files/ENCFF744BDC/@@download/ENCFF744BDC.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF786KHZ bigWig signal p-value ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF446QOS, ENCFF831XWF, ENCFF911DNW 555419186 ENCODE Processing Pipeline 7d59deb1473df98f55ffbfbf55610f74 https://www.encodeproject.org/files/ENCFF786KHZ/@@download/ENCFF786KHZ.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF573SYI bigWig signal p-value ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF508LDF, ENCFF911DNW 413180365 ENCODE Processing Pipeline 5816cba3684f204d00b04e3985f96247 https://www.encodeproject.org/files/ENCFF573SYI/@@download/ENCFF573SYI.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF628QZJ bigWig signal p-value ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF446QOS, ENCFF508LDF, ENCFF831XWF, ENCFF911DNW 723541728 ENCODE Processing Pipeline 6955736932be626eb924770be6831980 https://www.encodeproject.org/files/ENCFF628QZJ/@@download/ENCFF628QZJ.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF572WBM bigWig fold change over control ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF446QOS, ENCFF831XWF, ENCFF911DNW 507731322 ENCODE Processing Pipeline 32a2e0dac9f937b6dd557018fee10efe https://www.encodeproject.org/files/ENCFF572WBM/@@download/ENCFF572WBM.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF913JTL bigWig fold change over control ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF508LDF, ENCFF911DNW 460326461 ENCODE Processing Pipeline c34f60bf478a808e328d8306f6ead86d https://www.encodeproject.org/files/ENCFF913JTL/@@download/ENCFF913JTL.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF396TSB bigWig fold change over control ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF446QOS, ENCFF508LDF, ENCFF831XWF, ENCFF911DNW 834582542 ENCODE Processing Pipeline 58da39f2acfc131519a946d8f7149459 https://www.encodeproject.org/files/ENCFF396TSB/@@download/ENCFF396TSB.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF389JEN bed narrowPeak replicated peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF013JOF, ENCFF444MFZ, ENCFF758OJA 388551 ENCODE Processing Pipeline 20173043bc6de9a5f25029ea2a1b2a33 https://www.encodeproject.org/files/ENCFF389JEN/@@download/ENCFF389JEN.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF939CMO bigBed narrowPeak replicated peaks ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF389JEN 934339 ENCODE Processing Pipeline ae0c991e9169fafe483da4780b564a8b https://www.encodeproject.org/files/ENCFF939CMO/@@download/ENCFF939CMO.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001LJK bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LJW 375683432 Bing Ren, UCSD cd36e9deab4f052f4baf3cdf7b04407b https://www.encodeproject.org/files/ENCFF001LJK/@@download/ENCFF001LJK.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJL bigBed broadPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAF 758405 Bing Ren, UCSD 4bc5bfce3084d0073c0c9bac06d002df https://www.encodeproject.org/files/ENCFF001LJL/@@download/ENCFF001LJL.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJM bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LJV 351790353 Bing Ren, UCSD bdd0dd1305182a922b5e9f9d8997e53d https://www.encodeproject.org/files/ENCFF001LJM/@@download/ENCFF001LJM.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJP bigWig signal ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJK, ENCFF001LJM 65461935 Bing Ren, UCSD 7ec39a77b0f48b834322d73b54c54d04 https://www.encodeproject.org/files/ENCFF001LJP/@@download/ENCFF001LJP.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJV fastq reads ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 727262572 Bing Ren, UCSD c19df76966fc16da96cc7a1817f9bc3d https://www.encodeproject.org/files/ENCFF001LJV/@@download/ENCFF001LJV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF001LJW fastq reads ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 33 single-ended 559726846 Bing Ren, UCSD 150a94c66571075c8d7c93234c99265c https://www.encodeproject.org/files/ENCFF001LJW/@@download/ENCFF001LJW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, mixed read lengths insufficient read depth, insufficient read length ENCFF001YAF bed broadPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJK, ENCFF001LJM 455018 Bing Ren, UCSD cb9e5b2fce794b3cd151a9423bb79e61 https://www.encodeproject.org/files/ENCFF001YAF/@@download/ENCFF001YAF.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF697CPY bam unfiltered alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 761299643 ENCODE Processing Pipeline 8bd123aef2a81b4a089fc5123a6a4c8a https://www.encodeproject.org/files/ENCFF697CPY/@@download/ENCFF697CPY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF829TDM bam unfiltered alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 639695117 ENCODE Processing Pipeline 29e837c9b361cfc9a9d83e58881e6f58 https://www.encodeproject.org/files/ENCFF829TDM/@@download/ENCFF829TDM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF180YAD bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 327606791 ENCODE Processing Pipeline 47cb3f34235d3ca0c05be0f55f5d386c https://www.encodeproject.org/files/ENCFF180YAD/@@download/ENCFF180YAD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF198ZVJ bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 338293825 ENCODE Processing Pipeline 7f7dfc13b916f2c4da41a2c147a74b9f https://www.encodeproject.org/files/ENCFF198ZVJ/@@download/ENCFF198ZVJ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF474GRP bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 257944275 ENCODE Processing Pipeline cd731690ee99025d397982ea4aae76e0 https://www.encodeproject.org/files/ENCFF474GRP/@@download/ENCFF474GRP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF205YLK bed narrowPeak conservative idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF366XDH, ENCFF447SUY, ENCFF547MET, ENCFF644KRF 519516 ENCODE Processing Pipeline 9b98811fef340eb774acaac74e9fdab8 https://www.encodeproject.org/files/ENCFF205YLK/@@download/ENCFF205YLK.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF616HYA bed narrowPeak optimal idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF366XDH, ENCFF447SUY, ENCFF547MET, ENCFF644KRF 577078 ENCODE Processing Pipeline 460ef0f9b0836dd60f0c1212d21d83fa https://www.encodeproject.org/files/ENCFF616HYA/@@download/ENCFF616HYA.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF639AFA bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 274677793 ENCODE Processing Pipeline 90e1855f00ba6b3ad9a43e0da99a5501 https://www.encodeproject.org/files/ENCFF639AFA/@@download/ENCFF639AFA.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF644KRF bed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 2617929 ENCODE Processing Pipeline d4d8d386a0123c1c0d7bcfaaffca6657 https://www.encodeproject.org/files/ENCFF644KRF/@@download/ENCFF644KRF.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF753TYE bigBed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF644KRF 6433530 ENCODE Processing Pipeline e14c93d8a4d08a9a42a6a164e8eaea06 https://www.encodeproject.org/files/ENCFF753TYE/@@download/ENCFF753TYE.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF893QOZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF447SUY 10639180 ENCODE Processing Pipeline 14774412c86acb6fdfc7d2483c4dc714 https://www.encodeproject.org/files/ENCFF893QOZ/@@download/ENCFF893QOZ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF754RBY bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF616HYA 1051653 ENCODE Processing Pipeline 9906bc3e66a434f30183a738ee606d81 https://www.encodeproject.org/files/ENCFF754RBY/@@download/ENCFF754RBY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF693RNU bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 258158661 ENCODE Processing Pipeline 63f359b0dbdf5fb828af89674e261b43 https://www.encodeproject.org/files/ENCFF693RNU/@@download/ENCFF693RNU.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF708QMA bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 168568772 ENCODE Processing Pipeline dfccebe9b4430b65998f88813cc1c4dd https://www.encodeproject.org/files/ENCFF708QMA/@@download/ENCFF708QMA.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF987EVU bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 147442410 ENCODE Processing Pipeline f48c5eccd3ed8469800a62cf8a9d121c https://www.encodeproject.org/files/ENCFF987EVU/@@download/ENCFF987EVU.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF366XDH bed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 2785197 ENCODE Processing Pipeline 4c2ed94bdbadae711630ed1fa3d99867 https://www.encodeproject.org/files/ENCFF366XDH/@@download/ENCFF366XDH.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF434XPF bigBed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF366XDH 6258262 ENCODE Processing Pipeline 28dca9ad0f848325589222059ed9e7a4 https://www.encodeproject.org/files/ENCFF434XPF/@@download/ENCFF434XPF.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF089NKC bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF205YLK 968125 ENCODE Processing Pipeline 212d108894489934ce88beba17331ae7 https://www.encodeproject.org/files/ENCFF089NKC/@@download/ENCFF089NKC.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF824BON bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 322913450 ENCODE Processing Pipeline e476278b98330ba3b5bc38e4fa2c728a https://www.encodeproject.org/files/ENCFF824BON/@@download/ENCFF824BON.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF447SUY bed narrowPeak peaks and background as input for IDR ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 4673717 ENCODE Processing Pipeline 9bef35af9b60a397d777ca3c6a6b42f2 https://www.encodeproject.org/files/ENCFF447SUY/@@download/ENCFF447SUY.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF509SAZ fastq reads ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1159457560 Bing Ren, UCSD 7599ed4ab14fbccf903b6e3b15c5887d SRA:SRR3651834 https://www.encodeproject.org/files/ENCFF509SAZ/@@download/ENCFF509SAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released low read length, mixed read lengths ENCFF368AXL fastq reads ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 1081238263 Bing Ren, UCSD 64374a44b52540823e89c00559a22acb SRA:SRR3651833 https://www.encodeproject.org/files/ENCFF368AXL/@@download/ENCFF368AXL.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released low read length, mixed read lengths ENCFF122LMX bam alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF509SAZ, ENCFF806TVZ 980272277 ENCODE Processing Pipeline 05bb91ee3c6ff4ba45691ead27501d2a https://www.encodeproject.org/files/ENCFF122LMX/@@download/ENCFF122LMX.bam mm10-minimal archived low read length, mixed read lengths ENCFF562GVH bam alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF368AXL, ENCFF806TVZ 945542356 ENCODE Processing Pipeline 38a26cdcb627f52a09c45bb09d5b32c4 https://www.encodeproject.org/files/ENCFF562GVH/@@download/ENCFF562GVH.bam mm10-minimal archived low read length, mixed read lengths ENCFF346QVE bigBed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF590BYU 2890939 ENCODE Processing Pipeline f73130b00c02b9919025da0de8189327 https://www.encodeproject.org/files/ENCFF346QVE/@@download/ENCFF346QVE.bigBed mm10-minimal archived low read length, mixed read lengths ENCFF460NYX bigBed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF933GJN 2930106 ENCODE Processing Pipeline 482b4e0a762790aa5e4dac2388f41a0f https://www.encodeproject.org/files/ENCFF460NYX/@@download/ENCFF460NYX.bigBed mm10-minimal archived low read length, mixed read lengths ENCFF933GJN bed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF562GVH, ENCFF578PIN 940973 ENCODE Processing Pipeline 96a16994ba06423c08c20638bd8ccdfb https://www.encodeproject.org/files/ENCFF933GJN/@@download/ENCFF933GJN.bed.gz mm10-minimal archived low read length, mixed read lengths ENCFF590BYU bed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF122LMX, ENCFF439PVF, ENCFF578PIN 922426 ENCODE Processing Pipeline ef19d1143d9bf5dec1449a1470d68b4f https://www.encodeproject.org/files/ENCFF590BYU/@@download/ENCFF590BYU.bed.gz mm10-minimal archived low read length, mixed read lengths ENCFF502XMW bigBed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF085AWA 2775492 ENCODE Processing Pipeline 0cb55c22708078fb05a97d858b531a97 https://www.encodeproject.org/files/ENCFF502XMW/@@download/ENCFF502XMW.bigBed mm10-minimal archived low read length, mixed read lengths ENCFF085AWA bed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF122LMX, ENCFF439PVF, ENCFF562GVH, ENCFF578PIN 897625 ENCODE Processing Pipeline 7a8bc5be0c1e6bbbfe28b866b14fe8d4 https://www.encodeproject.org/files/ENCFF085AWA/@@download/ENCFF085AWA.bed.gz mm10-minimal archived low read length, mixed read lengths ENCFF647ULM bigWig signal p-value ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF122LMX, ENCFF439PVF, ENCFF578PIN 426795909 ENCODE Processing Pipeline d4a641cec9c8cf57c1a88298fe200700 https://www.encodeproject.org/files/ENCFF647ULM/@@download/ENCFF647ULM.bigWig mm10-minimal archived low read length, mixed read lengths ENCFF127VDS bigWig signal p-value ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF122LMX, ENCFF439PVF, ENCFF562GVH, ENCFF578PIN 557338416 ENCODE Processing Pipeline 1b9761f1ee55cfc68a1e39702f1d6346 https://www.encodeproject.org/files/ENCFF127VDS/@@download/ENCFF127VDS.bigWig mm10-minimal archived low read length, mixed read lengths ENCFF232AZZ bigWig signal p-value ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF562GVH, ENCFF578PIN 433825430 ENCODE Processing Pipeline 8ee8af6c80d40d8f1397eb4a0a88b48a https://www.encodeproject.org/files/ENCFF232AZZ/@@download/ENCFF232AZZ.bigWig mm10-minimal archived low read length, mixed read lengths ENCFF327CFV bigWig fold change over control ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF122LMX, ENCFF439PVF, ENCFF578PIN 438887369 ENCODE Processing Pipeline ed8337386c4d3daf46de0eebae73a6b1 https://www.encodeproject.org/files/ENCFF327CFV/@@download/ENCFF327CFV.bigWig mm10-minimal archived low read length, mixed read lengths ENCFF856GUZ bigWig fold change over control ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF562GVH, ENCFF578PIN 367680133 ENCODE Processing Pipeline d7f4843538ea219c7718c76ea7612bad https://www.encodeproject.org/files/ENCFF856GUZ/@@download/ENCFF856GUZ.bigWig mm10-minimal archived low read length, mixed read lengths ENCFF852CFI bigWig fold change over control ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF122LMX, ENCFF439PVF, ENCFF562GVH, ENCFF578PIN 644465532 ENCODE Processing Pipeline 3a3a471bc93142402c3fab064f9ded4a https://www.encodeproject.org/files/ENCFF852CFI/@@download/ENCFF852CFI.bigWig mm10-minimal archived low read length, mixed read lengths ENCFF610DDY bed narrowPeak replicated peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF085AWA, ENCFF590BYU, ENCFF933GJN 1136453 ENCODE Processing Pipeline 289a23399f9cf743d4f670a99eb21638 https://www.encodeproject.org/files/ENCFF610DDY/@@download/ENCFF610DDY.bed.gz mm10-minimal archived low read length, mixed read lengths ENCFF274TJX bigBed narrowPeak replicated peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF610DDY 2513839 ENCODE Processing Pipeline ab6a1258e134611de42966d3ec800a23 https://www.encodeproject.org/files/ENCFF274TJX/@@download/ENCFF274TJX.bigBed mm10-minimal archived low read length, mixed read lengths ENCFF133YUI bam unfiltered alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF509SAZ 1453345590 ENCODE Processing Pipeline b931a85cd5971589d4aa4a457634fe06 https://www.encodeproject.org/files/ENCFF133YUI/@@download/ENCFF133YUI.bam mm10 released low read length, mixed read lengths ENCFF212FRL bam alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF509SAZ 980088202 ENCODE Processing Pipeline a3bb18c658ae1b3ab388c26f9075d2cb https://www.encodeproject.org/files/ENCFF212FRL/@@download/ENCFF212FRL.bam mm10 released low read length, mixed read lengths ENCFF219CLW bam unfiltered alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF368AXL 1003038582 ENCODE Processing Pipeline 5141809165e1716882fd690f7440b04b https://www.encodeproject.org/files/ENCFF219CLW/@@download/ENCFF219CLW.bam mm10 released low read length, mixed read lengths ENCFF797AOJ bam alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF368AXL 766778516 ENCODE Processing Pipeline 1fe2f8aeb4a9e851cfd2ff1c5b43b05d https://www.encodeproject.org/files/ENCFF797AOJ/@@download/ENCFF797AOJ.bam mm10 released low read length, mixed read lengths ENCFF850WWW bed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF212FRL, ENCFF397HOQ, ENCFF749WCS 911888 ENCODE Processing Pipeline 3fe8cafddd1c08e2d57e05f95f724af6 https://www.encodeproject.org/files/ENCFF850WWW/@@download/ENCFF850WWW.bed.gz mm10 released low read length, mixed read lengths ENCFF314JLO bigBed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF850WWW 2859367 ENCODE Processing Pipeline 194bf7ad3092afe444c285a7708f6738 https://www.encodeproject.org/files/ENCFF314JLO/@@download/ENCFF314JLO.bigBed mm10 released low read length, mixed read lengths ENCFF356MWK bigBed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF576AGN 2760310 ENCODE Processing Pipeline e071f887fb7b6cbad3aad0d237bca66f https://www.encodeproject.org/files/ENCFF356MWK/@@download/ENCFF356MWK.bigBed mm10 released low read length, mixed read lengths ENCFF036XCB bed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF797AOJ 936156 ENCODE Processing Pipeline e31b8e66de7de5bd53fc6dd90afdca22 https://www.encodeproject.org/files/ENCFF036XCB/@@download/ENCFF036XCB.bed.gz mm10 released low read length, mixed read lengths ENCFF928EYT bigBed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF036XCB 2907794 ENCODE Processing Pipeline 4710991cc9572c4f684c41e110972f81 https://www.encodeproject.org/files/ENCFF928EYT/@@download/ENCFF928EYT.bigBed mm10 released low read length, mixed read lengths ENCFF800NEB bigWig signal p-value ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF212FRL, ENCFF397HOQ, ENCFF749WCS 401987822 ENCODE Processing Pipeline d961576ee57db13f5a9ec6c08f0f4377 https://www.encodeproject.org/files/ENCFF800NEB/@@download/ENCFF800NEB.bigWig mm10 released low read length, mixed read lengths ENCFF576AGN bed narrowPeak peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF212FRL, ENCFF397HOQ, ENCFF749WCS, ENCFF797AOJ 892077 ENCODE Processing Pipeline a1186bd533ffe4c784a9c37006a132b6 https://www.encodeproject.org/files/ENCFF576AGN/@@download/ENCFF576AGN.bed.gz mm10 released low read length, mixed read lengths ENCFF662GJQ bigWig signal p-value ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF797AOJ 414437014 ENCODE Processing Pipeline a3a70f1ef45e87ffe1d5cb56c0c40ded https://www.encodeproject.org/files/ENCFF662GJQ/@@download/ENCFF662GJQ.bigWig mm10 released low read length, mixed read lengths ENCFF443PLE bigWig signal p-value ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF212FRL, ENCFF397HOQ, ENCFF749WCS, ENCFF797AOJ 555271202 ENCODE Processing Pipeline 3bf36c5efd5e2a4d4d9ef8ef8bfbcf45 https://www.encodeproject.org/files/ENCFF443PLE/@@download/ENCFF443PLE.bigWig mm10 released low read length, mixed read lengths ENCFF375DGZ bigWig fold change over control ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF212FRL, ENCFF397HOQ, ENCFF749WCS 442717736 ENCODE Processing Pipeline 6e8d17539fea32dccf7aa4f2aaa0fcdb https://www.encodeproject.org/files/ENCFF375DGZ/@@download/ENCFF375DGZ.bigWig mm10 released low read length, mixed read lengths ENCFF672BZY bigWig fold change over control ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF749WCS, ENCFF797AOJ 367275192 ENCODE Processing Pipeline f7de55f34ccd017aaf8b33c5dfca4668 https://www.encodeproject.org/files/ENCFF672BZY/@@download/ENCFF672BZY.bigWig mm10 released low read length, mixed read lengths ENCFF745RNP bigBed narrowPeak replicated peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF985ACY 2498166 ENCODE Processing Pipeline a32e4ce91d30b65e45e91d348589010d https://www.encodeproject.org/files/ENCFF745RNP/@@download/ENCFF745RNP.bigBed mm10 released low read length, mixed read lengths ENCFF152HAY bigWig fold change over control ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF212FRL, ENCFF397HOQ, ENCFF749WCS, ENCFF797AOJ 642737552 ENCODE Processing Pipeline 221246272f80c9854582f2aad7db862a https://www.encodeproject.org/files/ENCFF152HAY/@@download/ENCFF152HAY.bigWig mm10 released low read length, mixed read lengths ENCFF985ACY bed narrowPeak replicated peaks ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF036XCB, ENCFF576AGN, ENCFF850WWW 1130518 ENCODE Processing Pipeline bdff543509fce8f79c52ffc520b0cea4 https://www.encodeproject.org/files/ENCFF985ACY/@@download/ENCFF985ACY.bed.gz mm10 released low read length, mixed read lengths ENCFF001IHW bigBed narrowPeak peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVK 127337 Barbara Wold, Caltech fa2504f2a26500d7b116d96a63982f17 https://www.encodeproject.org/files/ENCFF001IHW/@@download/ENCFF001IHW.bigBed mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001IHX fastq reads ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 301899546 Barbara Wold, Caltech 77b4e8e8d737636a695b0150692c9f1e https://www.encodeproject.org/files/ENCFF001IHX/@@download/ENCFF001IHX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHY fastq reads ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 335648847 Barbara Wold, Caltech af741bed9a9f26f0c5b6cafb8a62f974 https://www.encodeproject.org/files/ENCFF001IHY/@@download/ENCFF001IHY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001IHZ fastq reads ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 302622439 Barbara Wold, Caltech dca9e35fea8df011c88b9dc7dfd5f085 https://www.encodeproject.org/files/ENCFF001IHZ/@@download/ENCFF001IHZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released low read depth insufficient read length, control insufficient read depth ENCFF001IIA bigWig signal ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIB 142869044 Barbara Wold, Caltech ed2a3b803cbb98bc5a185eecbea82224 https://www.encodeproject.org/files/ENCFF001IIA/@@download/ENCFF001IIA.bigWig mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001IIB bam alignments ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IHX, ENCFF001IHY, ENCFF001IHZ 1081136603 Barbara Wold, Caltech 92ac3d482d04476aae68f7bf707e6283 https://www.encodeproject.org/files/ENCFF001IIB/@@download/ENCFF001IIB.bam mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001XVK bed narrowPeak peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IIB 45791 Barbara Wold, Caltech 350d735bb7972e7d85cc81183a9b8d24 https://www.encodeproject.org/files/ENCFF001XVK/@@download/ENCFF001XVK.bed.gz mm9 released low read depth insufficient read length, control insufficient read depth ENCFF393JVM bam unfiltered alignments ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHX, ENCFF001IHY, ENCFF001IHZ, ENCFF018NEO 1168864332 ENCODE Processing Pipeline f680aabe359335f895299c214fcfe282 https://www.encodeproject.org/files/ENCFF393JVM/@@download/ENCFF393JVM.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF380GQR bam alignments ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHX, ENCFF001IHY, ENCFF001IHZ, ENCFF018NEO 677419232 ENCODE Processing Pipeline 8661c79f35ab6219ef0a1ed6e0548886 https://www.encodeproject.org/files/ENCFF380GQR/@@download/ENCFF380GQR.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF768MYC bigWig signal p-value ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF380GQR 176070284 ENCODE Processing Pipeline 009734a4ea3c692f29098c165bde1320 https://www.encodeproject.org/files/ENCFF768MYC/@@download/ENCFF768MYC.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF552PFK bigWig fold change over control ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF380GQR 255830542 ENCODE Processing Pipeline b658ab728425bdf1f7f3a545ef6e703a https://www.encodeproject.org/files/ENCFF552PFK/@@download/ENCFF552PFK.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF643QSK bed narrowPeak peaks and background as input for IDR ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF380GQR 4597342 ENCODE Processing Pipeline 9d182a7b42c8d476cc12129b75a5fe33 https://www.encodeproject.org/files/ENCFF643QSK/@@download/ENCFF643QSK.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF562RCZ bigBed narrowPeak peaks and background as input for IDR ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF643QSK 10395851 ENCODE Processing Pipeline 856ca0f86024503b200cb4bd9ce5bf5e https://www.encodeproject.org/files/ENCFF562RCZ/@@download/ENCFF562RCZ.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF926GLB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF643QSK 123409 ENCODE Processing Pipeline fb64a8763713a6c213252f40e1e5ac50 https://www.encodeproject.org/files/ENCFF926GLB/@@download/ENCFF926GLB.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF672IWK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF926GLB 283629 ENCODE Processing Pipeline 81a1f4d113e06d485f6181dd86375e77 https://www.encodeproject.org/files/ENCFF672IWK/@@download/ENCFF672IWK.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF001KNR bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KOE 923419178 Bing Ren, UCSD 4fad67f2db8a904513b33ee5e3d5d344 https://www.encodeproject.org/files/ENCFF001KNR/@@download/ENCFF001KNR.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001KNS bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KNZ 887403956 Bing Ren, UCSD 15383ed49e7dcb8cde6be43c82cb1d78 https://www.encodeproject.org/files/ENCFF001KNS/@@download/ENCFF001KNS.bam mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001KNT bigWig signal ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KNR, ENCFF001KNS 83870364 Bing Ren, UCSD bbf171253808bf9e3df20e9ea01f36f8 https://www.encodeproject.org/files/ENCFF001KNT/@@download/ENCFF001KNT.bigWig mm9 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001KNZ fastq reads ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 45 single-ended 847600537 Bing Ren, UCSD 5dc745d815ba3dbeade9d5a1da934e3d https://www.encodeproject.org/files/ENCFF001KNZ/@@download/ENCFF001KNZ.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001KOE fastq reads ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 920801829 Bing Ren, UCSD 6b9237385a7bc8e2bab763d1d5bfcc19 https://www.encodeproject.org/files/ENCFF001KOE/@@download/ENCFF001KOE.fastq.gz Illumina Genome Analyzer II released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF686FUE bam unfiltered alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KOE, ENCFF806TVZ 1038446796 J. Michael Cherry, Stanford 402ac1ef221b56dae309723f67002691 https://www.encodeproject.org/files/ENCFF686FUE/@@download/ENCFF686FUE.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF461CYM bam unfiltered alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KNZ, ENCFF806TVZ 963092270 J. Michael Cherry, Stanford 1b6be9440470210f179ac77993754d0a https://www.encodeproject.org/files/ENCFF461CYM/@@download/ENCFF461CYM.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF735UNG bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KNZ, ENCFF806TVZ 669554743 ENCODE Processing Pipeline e8d0b066666633b353c20f91586d48a4 https://www.encodeproject.org/files/ENCFF735UNG/@@download/ENCFF735UNG.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF094RYR bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KOE, ENCFF806TVZ 396007896 ENCODE Processing Pipeline 6f12e338d880b844b4e457da407aef7c https://www.encodeproject.org/files/ENCFF094RYR/@@download/ENCFF094RYR.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF667PBW bam unfiltered alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KOE, ENCFF018NEO 1042199582 ENCODE Processing Pipeline 758437d451eb3474d94adb504932861a https://www.encodeproject.org/files/ENCFF667PBW/@@download/ENCFF667PBW.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF443AQP bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KOE, ENCFF018NEO 395976439 ENCODE Processing Pipeline 7b0f96ab3d57452c04216c811acd9d19 https://www.encodeproject.org/files/ENCFF443AQP/@@download/ENCFF443AQP.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF281YWL bam unfiltered alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KNZ, ENCFF018NEO 832906907 ENCODE Processing Pipeline 4923bbd69683e8787b96129288b539f8 https://www.encodeproject.org/files/ENCFF281YWL/@@download/ENCFF281YWL.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF171WKN bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KNZ, ENCFF018NEO 550113063 ENCODE Processing Pipeline 6f6b7dfaf384947b2e7c97cc48e84a45 https://www.encodeproject.org/files/ENCFF171WKN/@@download/ENCFF171WKN.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF001HZT bigBed narrowPeak peaks ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUK 440481 Barbara Wold, Caltech 94f29d06fe7353b9fe938516b775eeba https://www.encodeproject.org/files/ENCFF001HZT/@@download/ENCFF001HZT.bigBed mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001HZU fastq reads ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 360171207 Barbara Wold, Caltech e571475b212b51da4491f82494690274 https://www.encodeproject.org/files/ENCFF001HZU/@@download/ENCFF001HZU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length, control insufficient read depth ENCFF001HZV fastq reads ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 458329588 Barbara Wold, Caltech 11c5b3d86b92a477b10cf27839cc351f https://www.encodeproject.org/files/ENCFF001HZV/@@download/ENCFF001HZV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length, control insufficient read depth ENCFF001HZW fastq reads ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 32 single-ended 516736484 Barbara Wold, Caltech b5997d1232def36cfbac49e12f7cc6de https://www.encodeproject.org/files/ENCFF001HZW/@@download/ENCFF001HZW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released low read depth insufficient read length, control insufficient read depth ENCFF001HZX bigWig signal ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZY 124503820 Barbara Wold, Caltech bf414f9ce58fcc72e5c74f17613a23e3 https://www.encodeproject.org/files/ENCFF001HZX/@@download/ENCFF001HZX.bigWig mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001HZY bam alignments ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001HZU, ENCFF001HZV, ENCFF001HZW 1427861263 Barbara Wold, Caltech 46eef22327a3c2f63bb1b71b9f85b625 https://www.encodeproject.org/files/ENCFF001HZY/@@download/ENCFF001HZY.bam mm9 released low read depth insufficient read length, control insufficient read depth ENCFF001XUK bed narrowPeak peaks ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001HZY 243998 Barbara Wold, Caltech b54c8f52b40114b7ced07d72eb9ebb9d https://www.encodeproject.org/files/ENCFF001XUK/@@download/ENCFF001XUK.bed.gz mm9 released low read depth insufficient read length, control insufficient read depth ENCFF177BCL bam alignments ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001HZU, ENCFF001HZV, ENCFF001HZW, ENCFF018NEO 620282760 ENCODE Processing Pipeline 7df3e6df016297de57f455f94148ef42 https://www.encodeproject.org/files/ENCFF177BCL/@@download/ENCFF177BCL.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF019OSZ bam unfiltered alignments ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001HZU, ENCFF001HZV, ENCFF001HZW, ENCFF018NEO 1490489225 ENCODE Processing Pipeline f1fe4fb3b2470edf157509116b21a5fa https://www.encodeproject.org/files/ENCFF019OSZ/@@download/ENCFF019OSZ.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF002FBK bed narrowPeak peaks ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF177BCL, ENCFF319ZGT 793680 ENCODE Processing Pipeline f0600da9d83e67135627077ea0c4144f https://www.encodeproject.org/files/ENCFF002FBK/@@download/ENCFF002FBK.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF441VOR bigBed narrowPeak peaks ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF002FBK 2354246 ENCODE Processing Pipeline 009dce1db7ef5ab47660e7385ba252c8 https://www.encodeproject.org/files/ENCFF441VOR/@@download/ENCFF441VOR.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF970RGX bigWig signal p-value ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF177BCL, ENCFF319ZGT 223444285 ENCODE Processing Pipeline 15a8d871450c57c4c923c41a4cbf6c15 https://www.encodeproject.org/files/ENCFF970RGX/@@download/ENCFF970RGX.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF046ZAM bigBed narrowPeak stable peaks ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF412QMK 1931423 ENCODE Processing Pipeline 1c20297a15145a34ed5d0c3f82dbac2a https://www.encodeproject.org/files/ENCFF046ZAM/@@download/ENCFF046ZAM.bigBed mm10 released low read depth insufficient read length, control insufficient read depth ENCFF412QMK bed narrowPeak stable peaks ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF002FBK 843333 ENCODE Processing Pipeline e502ec1853b1ab2ad5774e7a8d76e30c https://www.encodeproject.org/files/ENCFF412QMK/@@download/ENCFF412QMK.bed.gz mm10 released low read depth insufficient read length, control insufficient read depth ENCFF696NHF bigWig fold change over control ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF177BCL, ENCFF319ZGT 213081209 ENCODE Processing Pipeline e193106279587610b935c119db4c864a https://www.encodeproject.org/files/ENCFF696NHF/@@download/ENCFF696NHF.bigWig mm10 released low read depth insufficient read length, control insufficient read depth ENCFF809JLP bam alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF185WLY, ENCFF586VRZ, ENCFF806TVZ 2806931462 ENCODE Processing Pipeline 639d967ff851b77f01b374e6e783e7ee https://www.encodeproject.org/files/ENCFF809JLP/@@download/ENCFF809JLP.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF836LGE bam alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF382RMS, ENCFF525ZNI, ENCFF806TVZ 2870372298 ENCODE Processing Pipeline 57dd1c8adc7c06c2c0ef2a66f27fe133 https://www.encodeproject.org/files/ENCFF836LGE/@@download/ENCFF836LGE.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF525ZNI fastq reads ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2893644712 Bing Ren, UCSD aca82147058ed9d33f0148dc6c058097 SRA:SRR3651444 https://www.encodeproject.org/files/ENCFF525ZNI/@@download/ENCFF525ZNI.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF586VRZ fastq reads ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2919866272 Bing Ren, UCSD 4b4fee18bf89f2fd3e653e3f1f765e41 SRA:SRR3651446 https://www.encodeproject.org/files/ENCFF586VRZ/@@download/ENCFF586VRZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF185WLY fastq reads ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 831891853 Bing Ren, UCSD c7dcdfb7823c99b33e6ac504ee25b301 SRA:SRR3651447 https://www.encodeproject.org/files/ENCFF185WLY/@@download/ENCFF185WLY.fastq.gz Illumina HiSeq 2500 /files/ENCFF333CMN/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF382RMS fastq reads ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 742567917 Bing Ren, UCSD 74b9c2a27e6decf850b3549822b0b43d SRA:SRR3651445 https://www.encodeproject.org/files/ENCFF382RMS/@@download/ENCFF382RMS.fastq.gz Illumina HiSeq 2500 /files/ENCFF554GAJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF121HKZ bigBed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF977PSQ 3437067 ENCODE Processing Pipeline 8bc42995d51ca54e2f111c7cb1e1bacb https://www.encodeproject.org/files/ENCFF121HKZ/@@download/ENCFF121HKZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF970UIJ bed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF541RVC, ENCFF674GBO, ENCFF809JLP, ENCFF836LGE 1388695 ENCODE Processing Pipeline ddcf87fcac277b291e04e4d762deaf75 https://www.encodeproject.org/files/ENCFF970UIJ/@@download/ENCFF970UIJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF977PSQ bed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF674GBO, ENCFF809JLP 1636422 ENCODE Processing Pipeline fae12fdb97a6dad4a9db31759a5342d3 https://www.encodeproject.org/files/ENCFF977PSQ/@@download/ENCFF977PSQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF367WCK bigBed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF757ICK 3656484 ENCODE Processing Pipeline e9c2d9aa8adc3fbab63393d175d44516 https://www.encodeproject.org/files/ENCFF367WCK/@@download/ENCFF367WCK.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF282XTJ bigWig signal p-value ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF674GBO, ENCFF809JLP 900646209 ENCODE Processing Pipeline 26c4ee7a5f2e721342225a3b2c180d65 https://www.encodeproject.org/files/ENCFF282XTJ/@@download/ENCFF282XTJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF757ICK bed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF541RVC, ENCFF674GBO, ENCFF836LGE 1840590 ENCODE Processing Pipeline 229eff885d722a659f496575052c00f5 https://www.encodeproject.org/files/ENCFF757ICK/@@download/ENCFF757ICK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF655MZC bigBed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF970UIJ 3483932 ENCODE Processing Pipeline f5caea43810b81d039cbd2f4fec39366 https://www.encodeproject.org/files/ENCFF655MZC/@@download/ENCFF655MZC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF607IYJ bigWig signal p-value ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF541RVC, ENCFF674GBO, ENCFF836LGE 1040794527 ENCODE Processing Pipeline 2518beb3e1acbf6cdce513eecfb78ba3 https://www.encodeproject.org/files/ENCFF607IYJ/@@download/ENCFF607IYJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF465CGO bigWig fold change over control ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF674GBO, ENCFF809JLP 1061854393 ENCODE Processing Pipeline eb6e6c284c908e7215e7c65d1733e140 https://www.encodeproject.org/files/ENCFF465CGO/@@download/ENCFF465CGO.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF586QIV bigWig signal p-value ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF541RVC, ENCFF674GBO, ENCFF809JLP, ENCFF836LGE 1195748910 ENCODE Processing Pipeline a76fe775a9ba9a95a0092d49a4f47988 https://www.encodeproject.org/files/ENCFF586QIV/@@download/ENCFF586QIV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF704PYP bigWig fold change over control ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF541RVC, ENCFF674GBO, ENCFF836LGE 1062539177 ENCODE Processing Pipeline e4e7bfe3a103c94f528c10d1c82ef889 https://www.encodeproject.org/files/ENCFF704PYP/@@download/ENCFF704PYP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF208PHP bed narrowPeak replicated peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF757ICK, ENCFF970UIJ, ENCFF977PSQ 1234583 ENCODE Processing Pipeline 4f3261f8142ca14f8731c164893a3fd8 https://www.encodeproject.org/files/ENCFF208PHP/@@download/ENCFF208PHP.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF190PPR bigWig fold change over control ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF541RVC, ENCFF674GBO, ENCFF809JLP, ENCFF836LGE 1576090906 ENCODE Processing Pipeline 0c2d882f8a9c980c7dd5dfcb8123ef8e https://www.encodeproject.org/files/ENCFF190PPR/@@download/ENCFF190PPR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF922RLY bigBed narrowPeak replicated peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF208PHP 2560595 ENCODE Processing Pipeline 734b50c44a9e2aa836fd655c35549559 https://www.encodeproject.org/files/ENCFF922RLY/@@download/ENCFF922RLY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF299NAJ bam unfiltered alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF382RMS, ENCFF525ZNI 4273626305 ENCODE Processing Pipeline 28aad5bc970c8780808251ba29473287 https://www.encodeproject.org/files/ENCFF299NAJ/@@download/ENCFF299NAJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF803RXY bam unfiltered alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF185WLY, ENCFF586VRZ 4391498073 ENCODE Processing Pipeline 9fa7d49c43223ae28e430cf0ffad0d93 https://www.encodeproject.org/files/ENCFF803RXY/@@download/ENCFF803RXY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF797BHA bam alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF185WLY, ENCFF586VRZ 2806355444 ENCODE Processing Pipeline d5d316880a4d884a9e79fbdeb6bcce28 https://www.encodeproject.org/files/ENCFF797BHA/@@download/ENCFF797BHA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF729MAQ bam alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF382RMS, ENCFF525ZNI 2869852994 ENCODE Processing Pipeline 4e5d1ca51163bbedbd2e69a437acde50 https://www.encodeproject.org/files/ENCFF729MAQ/@@download/ENCFF729MAQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF890EUK bed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF797BHA, ENCFF962XXR 1942113 ENCODE Processing Pipeline 0786859bb624a1174aeff2ee80ef5d26 https://www.encodeproject.org/files/ENCFF890EUK/@@download/ENCFF890EUK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF203BCF bed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF729MAQ, ENCFF962XXR 1677309 ENCODE Processing Pipeline 1b16e863d46863f1848e265b58146d5e https://www.encodeproject.org/files/ENCFF203BCF/@@download/ENCFF203BCF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF862ESH bigBed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF203BCF 3333658 ENCODE Processing Pipeline 57b1163d8a065a8f6a4ba3a216a21d48 https://www.encodeproject.org/files/ENCFF862ESH/@@download/ENCFF862ESH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF268VZT bed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF729MAQ, ENCFF797BHA, ENCFF962XXR 2009633 ENCODE Processing Pipeline fe58fb3e1e07c6502189baefe3211c42 https://www.encodeproject.org/files/ENCFF268VZT/@@download/ENCFF268VZT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF663HHR bigBed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF890EUK 4094768 ENCODE Processing Pipeline fdff61d60621173cb773b5a582ec6543 https://www.encodeproject.org/files/ENCFF663HHR/@@download/ENCFF663HHR.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF802OPQ bigBed narrowPeak peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF268VZT 5066168 ENCODE Processing Pipeline cf9fc349da022da74144fad415f9e9ff https://www.encodeproject.org/files/ENCFF802OPQ/@@download/ENCFF802OPQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF809DGZ bigWig signal p-value ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF797BHA, ENCFF962XXR 1068718919 ENCODE Processing Pipeline bcad29557207e21a558caeadb9d9a33e https://www.encodeproject.org/files/ENCFF809DGZ/@@download/ENCFF809DGZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF640VHS bigWig signal p-value ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF729MAQ, ENCFF962XXR 961484165 ENCODE Processing Pipeline 505f1531220c1cb5555e93909c4133fb https://www.encodeproject.org/files/ENCFF640VHS/@@download/ENCFF640VHS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF545CYN bigWig signal p-value ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF729MAQ, ENCFF797BHA, ENCFF962XXR 1647442692 ENCODE Processing Pipeline 4a9484b7d0d31b422b899db477fac2c2 https://www.encodeproject.org/files/ENCFF545CYN/@@download/ENCFF545CYN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF580OTY bigWig fold change over control ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF797BHA, ENCFF962XXR 1227748430 ENCODE Processing Pipeline 158141fcc9b408fea95fce197c567af8 https://www.encodeproject.org/files/ENCFF580OTY/@@download/ENCFF580OTY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF023PIV bigWig fold change over control ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF729MAQ, ENCFF962XXR 966028165 ENCODE Processing Pipeline 5fedfbce55dce25ca8d88b469c88fad4 https://www.encodeproject.org/files/ENCFF023PIV/@@download/ENCFF023PIV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF610HBD bigWig fold change over control ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF729MAQ, ENCFF797BHA, ENCFF962XXR 1692239184 ENCODE Processing Pipeline 781ecdb7a4a127feb1630f29ac26d68c https://www.encodeproject.org/files/ENCFF610HBD/@@download/ENCFF610HBD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF276UEL bed narrowPeak replicated peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF203BCF, ENCFF268VZT, ENCFF890EUK 1258310 ENCODE Processing Pipeline 41128c7d0d85b26865909b0b82c448ad https://www.encodeproject.org/files/ENCFF276UEL/@@download/ENCFF276UEL.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF490XWP bigBed narrowPeak replicated peaks ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF276UEL 2556767 ENCODE Processing Pipeline 8c8ff282c069433106455c199a7e3230 https://www.encodeproject.org/files/ENCFF490XWP/@@download/ENCFF490XWP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KXQ bam alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KYC 290987415 Bing Ren, UCSD f4c3d63a96f18151b077c17f5f73fd87 https://www.encodeproject.org/files/ENCFF001KXQ/@@download/ENCFF001KXQ.bam mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXS bigBed broadPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZL 254464 Bing Ren, UCSD 5c427fc71b691266054e1dec27a1f653 https://www.encodeproject.org/files/ENCFF001KXS/@@download/ENCFF001KXS.bigBed mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXU bam alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KYG 1116970969 Bing Ren, UCSD 2c70505e25b677eb5f8ff72f0a6c168b https://www.encodeproject.org/files/ENCFF001KXU/@@download/ENCFF001KXU.bam mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXV bigWig signal ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KXQ, ENCFF001KXU 69945879 Bing Ren, UCSD b34eacadd484678949e58d9b1a25f23b https://www.encodeproject.org/files/ENCFF001KXV/@@download/ENCFF001KXV.bigWig mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001KYC fastq reads ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 359279266 Bing Ren, UCSD 4934470ad3a70a928474f49a54244a4c https://www.encodeproject.org/files/ENCFF001KYC/@@download/ENCFF001KYC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001KYG fastq reads ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1519627278 Bing Ren, UCSD f4a085bae1dbf14efc96da2f194260a5 https://www.encodeproject.org/files/ENCFF001KYG/@@download/ENCFF001KYG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001XZL bed broadPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KXQ, ENCFF001KXU 152564 Bing Ren, UCSD 55b20e0f4bac7c27ddd09830096b5f6c https://www.encodeproject.org/files/ENCFF001XZL/@@download/ENCFF001XZL.bed.gz mm9 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF292LNY bam unfiltered alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KYC, ENCFF018NEO 414791444 ENCODE Processing Pipeline 6c670ae7974ebbe638d2c236a8ed9633 https://www.encodeproject.org/files/ENCFF292LNY/@@download/ENCFF292LNY.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF192QFK bam unfiltered alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KYG, ENCFF018NEO 1644715126 ENCODE Processing Pipeline f79ea61699da506b338354012b0d6fdd https://www.encodeproject.org/files/ENCFF192QFK/@@download/ENCFF192QFK.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF716YFY bam alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KYG, ENCFF018NEO 1035564231 ENCODE Processing Pipeline 4fbc4085da40f9b099cfaea6756e0558 https://www.encodeproject.org/files/ENCFF716YFY/@@download/ENCFF716YFY.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF880WLG bam alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KYC, ENCFF018NEO 299798363 ENCODE Processing Pipeline f369b0bb74361cb22536bc0efa352dc3 https://www.encodeproject.org/files/ENCFF880WLG/@@download/ENCFF880WLG.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF659EIL bed narrowPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF716YFY, ENCFF880WLG 850301 ENCODE Processing Pipeline 2bf04ef0e6566e061443e0c989007c7c https://www.encodeproject.org/files/ENCFF659EIL/@@download/ENCFF659EIL.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF269JNY bed narrowPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF283CTW, ENCFF347BCY, ENCFF716YFY 1139131 ENCODE Processing Pipeline 0f71221b70ae80c8b9b59f0ac04082ca https://www.encodeproject.org/files/ENCFF269JNY/@@download/ENCFF269JNY.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF909XCT bed narrowPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF880WLG 770372 ENCODE Processing Pipeline 1028b62f28018d7c88f65e49b2446c04 https://www.encodeproject.org/files/ENCFF909XCT/@@download/ENCFF909XCT.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF894OKJ bigBed narrowPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF909XCT 2380729 ENCODE Processing Pipeline 0c837c2c6961a038f592632e4f1d1902 https://www.encodeproject.org/files/ENCFF894OKJ/@@download/ENCFF894OKJ.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF915WJC bigBed narrowPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF659EIL 2327859 ENCODE Processing Pipeline 4a6ff77482dd4c4e89ee5067a644d04d https://www.encodeproject.org/files/ENCFF915WJC/@@download/ENCFF915WJC.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF305OCL bigBed narrowPeak peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF269JNY 3379215 ENCODE Processing Pipeline 55622a933bbce82126a1d8a091cc9d30 https://www.encodeproject.org/files/ENCFF305OCL/@@download/ENCFF305OCL.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF247QUK bigWig signal p-value ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF283CTW, ENCFF347BCY, ENCFF716YFY 441878219 ENCODE Processing Pipeline 425a793faf038986b94f13332be638bb https://www.encodeproject.org/files/ENCFF247QUK/@@download/ENCFF247QUK.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF290DDK bigWig signal p-value ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF716YFY, ENCFF880WLG 428944208 ENCODE Processing Pipeline 704afb92f86534a7366bb48688e71a91 https://www.encodeproject.org/files/ENCFF290DDK/@@download/ENCFF290DDK.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF345GNG bigWig signal p-value ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF880WLG 202436040 ENCODE Processing Pipeline 1120eef8f08ad1ea10cbd16d0ed6c110 https://www.encodeproject.org/files/ENCFF345GNG/@@download/ENCFF345GNG.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF217ARQ bigWig fold change over control ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF880WLG 145016305 ENCODE Processing Pipeline e884ace0c64c7b0ae28dffde44c38061 https://www.encodeproject.org/files/ENCFF217ARQ/@@download/ENCFF217ARQ.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF621VDX bigWig fold change over control ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF283CTW, ENCFF347BCY, ENCFF716YFY 398359751 ENCODE Processing Pipeline f84cd48987cf7c02e18245d63d84ce8a https://www.encodeproject.org/files/ENCFF621VDX/@@download/ENCFF621VDX.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF354DWX bigWig fold change over control ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF716YFY, ENCFF880WLG 497989739 ENCODE Processing Pipeline 39d6883ac6d54e310c48a13c1d1aeb06 https://www.encodeproject.org/files/ENCFF354DWX/@@download/ENCFF354DWX.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF851RAO bigBed narrowPeak replicated peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF974HMO 1941702 ENCODE Processing Pipeline 65cafc1b459b89a507b3bdff1922f39a https://www.encodeproject.org/files/ENCFF851RAO/@@download/ENCFF851RAO.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF974HMO bed narrowPeak replicated peaks ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF269JNY, ENCFF659EIL, ENCFF909XCT 935914 ENCODE Processing Pipeline b915205b2ed0348f3f7c4be872eb7bbf https://www.encodeproject.org/files/ENCFF974HMO/@@download/ENCFF974HMO.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001LXK bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LYD 5896503137 Ross Hardison, PennState 72799cedb00ec7c918474a69ff760529 https://www.encodeproject.org/files/ENCFF001LXK/@@download/ENCFF001LXK.bam mm9 archived low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF001LXL bigBed broadPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YCF 3740959 Ross Hardison, PennState 73454978c87e74f30ae438c43b380f69 https://www.encodeproject.org/files/ENCFF001LXL/@@download/ENCFF001LXL.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF001LXM bigBed broadPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCG 3587082 Ross Hardison, PennState 854fd2c39ac9297f2ab7e68966ce5cbd https://www.encodeproject.org/files/ENCFF001LXM/@@download/ENCFF001LXM.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF001LXN bigBed broadPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCH 2236137 Ross Hardison, PennState 22a414e954f47b5255975fa98df252bb https://www.encodeproject.org/files/ENCFF001LXN/@@download/ENCFF001LXN.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF001LXO bigWig signal ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5566059886 Ross Hardison, PennState 46e5a21e5d7d2e4fffee0ad21198626e https://www.encodeproject.org/files/ENCFF001LXO/@@download/ENCFF001LXO.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from control insufficient read depth ENCFF001LXP bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LYB 4938342873 Ross Hardison, PennState b4c8f7730f65f559dc2f68887c9bb4cb https://www.encodeproject.org/files/ENCFF001LXP/@@download/ENCFF001LXP.bam mm9 archived low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF001LXQ bigWig signal ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5830198730 Ross Hardison, PennState 026c2b8c256d2ee496104bf265c79363 https://www.encodeproject.org/files/ENCFF001LXQ/@@download/ENCFF001LXQ.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from control insufficient read depth ENCFF001LXS bigWig signal ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 6362486588 Ross Hardison, PennState f879052384a138c2aef1162199dbd497 https://www.encodeproject.org/files/ENCFF001LXS/@@download/ENCFF001LXS.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from control insufficient read depth ENCFF001LYB fastq reads ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 48 single-ended 4334232364 Ross Hardison, PennState d0749b9eb8984a9470370f1062881a9f https://www.encodeproject.org/files/ENCFF001LYB/@@download/ENCFF001LYB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF001LYD fastq reads ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 5339391786 Ross Hardison, PennState f7203c69a798a61cb6474f6d5177ae08 https://www.encodeproject.org/files/ENCFF001LYD/@@download/ENCFF001LYD.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMU/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths control insufficient read depth ENCFF001YCF bed broadPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1683058 Ross Hardison, PennState 76d64b5f5f3b9b458c2fbd4a31c1d35e https://www.encodeproject.org/files/ENCFF001YCF/@@download/ENCFF001YCF.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from control insufficient read depth ENCFF001YCG bed broadPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1336708 Ross Hardison, PennState 208d7e0889b62a2bc4d8f82a3bc9004d https://www.encodeproject.org/files/ENCFF001YCG/@@download/ENCFF001YCG.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from control insufficient read depth ENCFF001YCH bed broadPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 903026 Ross Hardison, PennState e9562592b10ad9fad550e388006f4acd https://www.encodeproject.org/files/ENCFF001YCH/@@download/ENCFF001YCH.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from control insufficient read depth ENCFF748QIJ bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LYD, ENCFF806TVZ 2807341993 ENCODE Processing Pipeline d81981e69dbf791b558530dd8fc7877f https://www.encodeproject.org/files/ENCFF748QIJ/@@download/ENCFF748QIJ.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF348QLK bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LYB, ENCFF806TVZ 2749592485 ENCODE Processing Pipeline e2926c37d51c1e827556e8bf0342f650 https://www.encodeproject.org/files/ENCFF348QLK/@@download/ENCFF348QLK.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF868FAV bam unfiltered alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYD, ENCFF018NEO 5176656509 ENCODE Processing Pipeline 591d1d93112d0ef063530ede16ff6ae2 https://www.encodeproject.org/files/ENCFF868FAV/@@download/ENCFF868FAV.bam mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF020CFO bam unfiltered alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYB, ENCFF018NEO 4814217267 ENCODE Processing Pipeline caa973a24233f267c31c3adaf307270b https://www.encodeproject.org/files/ENCFF020CFO/@@download/ENCFF020CFO.bam mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF209UFJ bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYB, ENCFF018NEO 2462848031 ENCODE Processing Pipeline 1887252bd46198f6642ec8af4f56d812 https://www.encodeproject.org/files/ENCFF209UFJ/@@download/ENCFF209UFJ.bam mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF733URD bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYD, ENCFF018NEO 2254120252 ENCODE Processing Pipeline 83c1263e2076afa044b006976ad491ed https://www.encodeproject.org/files/ENCFF733URD/@@download/ENCFF733URD.bam mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF429TSS bed narrowPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF209UFJ, ENCFF381DCK 796637 ENCODE Processing Pipeline 8aca46484a2c9a7cacc6d197666af2cd https://www.encodeproject.org/files/ENCFF429TSS/@@download/ENCFF429TSS.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF774LXA bed narrowPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF733URD, ENCFF887UBK 4860257 ENCODE Processing Pipeline 3319a21eaab4dc2dd050b5484ce91c32 https://www.encodeproject.org/files/ENCFF774LXA/@@download/ENCFF774LXA.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF187GAQ bed narrowPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF209UFJ, ENCFF381DCK, ENCFF733URD, ENCFF887UBK 2964893 ENCODE Processing Pipeline 5ff943886d2f4b9d24d4621e5dd8825d https://www.encodeproject.org/files/ENCFF187GAQ/@@download/ENCFF187GAQ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF798QOX bigBed narrowPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF187GAQ 6485942 ENCODE Processing Pipeline 2bb828f5cc637ccc681d916bcf5831d0 https://www.encodeproject.org/files/ENCFF798QOX/@@download/ENCFF798QOX.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF103DED bigBed narrowPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF774LXA 10204480 ENCODE Processing Pipeline 6f60e1a21642c3c38fa1ef8fdaa1652b https://www.encodeproject.org/files/ENCFF103DED/@@download/ENCFF103DED.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF622LPH bigWig signal p-value ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF733URD, ENCFF887UBK 648714172 ENCODE Processing Pipeline b7ab135d5d28224b55dc873bcec3c590 https://www.encodeproject.org/files/ENCFF622LPH/@@download/ENCFF622LPH.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF994WFI bigBed narrowPeak peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF429TSS 2075925 ENCODE Processing Pipeline a6f64c1b3f89a46b9766a743cc5b5330 https://www.encodeproject.org/files/ENCFF994WFI/@@download/ENCFF994WFI.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF484INW bigWig signal p-value ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF209UFJ, ENCFF381DCK 446063410 ENCODE Processing Pipeline 0643694d149c80a9086e70b66a6b0acc https://www.encodeproject.org/files/ENCFF484INW/@@download/ENCFF484INW.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF679NHJ bigWig signal p-value ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF209UFJ, ENCFF381DCK, ENCFF733URD, ENCFF887UBK 895977807 ENCODE Processing Pipeline 47574ceeaba6ca9eb0165ca22f9d27f7 https://www.encodeproject.org/files/ENCFF679NHJ/@@download/ENCFF679NHJ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF880PKH bigWig fold change over control ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF733URD, ENCFF887UBK 837733833 ENCODE Processing Pipeline 093bcacf4ae125631202e7a5b002dec9 https://www.encodeproject.org/files/ENCFF880PKH/@@download/ENCFF880PKH.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF379GUC bigWig fold change over control ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF209UFJ, ENCFF381DCK 747772476 ENCODE Processing Pipeline 79ac4f18bc56ef781e2c72fc3b0e06d7 https://www.encodeproject.org/files/ENCFF379GUC/@@download/ENCFF379GUC.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF028NHB bed narrowPeak replicated peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF187GAQ, ENCFF429TSS, ENCFF774LXA 2710129 ENCODE Processing Pipeline 1cabf76232486a3bc7f27eb9d43e7f2d https://www.encodeproject.org/files/ENCFF028NHB/@@download/ENCFF028NHB.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF277AAJ bigWig fold change over control ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF209UFJ, ENCFF381DCK, ENCFF733URD, ENCFF887UBK 1392498833 ENCODE Processing Pipeline 142f6c412edda007b4b5d923b6112514 https://www.encodeproject.org/files/ENCFF277AAJ/@@download/ENCFF277AAJ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF214HRU bigBed narrowPeak replicated peaks ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF028NHB 5075443 ENCODE Processing Pipeline 72a703c135c64f7b252acbd0a7b77d73 https://www.encodeproject.org/files/ENCFF214HRU/@@download/ENCFF214HRU.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF094DUO fastq reads ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 1818839453 Bing Ren, UCSD 834205b6b6de1822edd6d2c4bbf3bd01 SRA:SRR3651777 https://www.encodeproject.org/files/ENCFF094DUO/@@download/ENCFF094DUO.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF374XLP fastq reads ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2551272293 Bing Ren, UCSD 59955d2983699a4fdf04b037ee34dbf6 SRA:SRR3651776 https://www.encodeproject.org/files/ENCFF374XLP/@@download/ENCFF374XLP.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released mild to moderate bottlenecking, inconsistent platforms ENCFF597JKA bam alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF374XLP, ENCFF806TVZ 1952966479 ENCODE Processing Pipeline 7a64ed792407470c5d69cabf717ea9e3 https://www.encodeproject.org/files/ENCFF597JKA/@@download/ENCFF597JKA.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF374JEH bam alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF094DUO, ENCFF806TVZ 1500196791 ENCODE Processing Pipeline faa81d66e844a1b96d4ef795e04c6bac https://www.encodeproject.org/files/ENCFF374JEH/@@download/ENCFF374JEH.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF549TNE bigBed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF264USO 3267867 ENCODE Processing Pipeline 5dde20e0d94765bc9f7f1644d21757ae https://www.encodeproject.org/files/ENCFF549TNE/@@download/ENCFF549TNE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF566EUW bed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF374JEH, ENCFF674GBO 1096296 ENCODE Processing Pipeline 5d31a9db25b0f9db1ed2260f74f5358d https://www.encodeproject.org/files/ENCFF566EUW/@@download/ENCFF566EUW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF962LWN bed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF374JEH, ENCFF541RVC, ENCFF597JKA, ENCFF674GBO 1546410 ENCODE Processing Pipeline 99cac42e26b30847d85bf4f1753dde1f https://www.encodeproject.org/files/ENCFF962LWN/@@download/ENCFF962LWN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF264USO bed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF597JKA, ENCFF674GBO 1396962 ENCODE Processing Pipeline 77880ac65242d1b689bfa217ecfa3bde https://www.encodeproject.org/files/ENCFF264USO/@@download/ENCFF264USO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF322CGY bigBed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF566EUW 2648351 ENCODE Processing Pipeline 259f87408963f91e0d950987a2a87360 https://www.encodeproject.org/files/ENCFF322CGY/@@download/ENCFF322CGY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF873IKT bigBed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF962LWN 4471321 ENCODE Processing Pipeline b3d86616a66ce0961f7b4f126e411a15 https://www.encodeproject.org/files/ENCFF873IKT/@@download/ENCFF873IKT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF018FXS bigWig signal p-value ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF374JEH, ENCFF674GBO 493624715 ENCODE Processing Pipeline 87a25ca0508aa4031383b8fae08304d9 https://www.encodeproject.org/files/ENCFF018FXS/@@download/ENCFF018FXS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF171WFY bigWig signal p-value ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF597JKA, ENCFF674GBO 767406300 ENCODE Processing Pipeline 3883b400db92e939280d727d10a535ee https://www.encodeproject.org/files/ENCFF171WFY/@@download/ENCFF171WFY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF954TOV bigWig signal p-value ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF374JEH, ENCFF541RVC, ENCFF597JKA, ENCFF674GBO 1091822411 ENCODE Processing Pipeline f2cdb60de1cbf02420e52cd4dd02a2a4 https://www.encodeproject.org/files/ENCFF954TOV/@@download/ENCFF954TOV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF449VLD bigWig fold change over control ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF541RVC, ENCFF597JKA, ENCFF674GBO 827917246 ENCODE Processing Pipeline 7de7709c017b6b34aeb040db57e78254 https://www.encodeproject.org/files/ENCFF449VLD/@@download/ENCFF449VLD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF497AYC bigWig fold change over control ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF374JEH, ENCFF674GBO 537612382 ENCODE Processing Pipeline 7b9edc4302e443231f6ff23ba3ecd6e1 https://www.encodeproject.org/files/ENCFF497AYC/@@download/ENCFF497AYC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF946WSC bigWig fold change over control ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF374JEH, ENCFF541RVC, ENCFF597JKA, ENCFF674GBO 1195399607 ENCODE Processing Pipeline 9f4312f5c6e21baef532cbd690ffaf98 https://www.encodeproject.org/files/ENCFF946WSC/@@download/ENCFF946WSC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF144FGR bigBed narrowPeak replicated peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF584WLO 2307111 ENCODE Processing Pipeline a8f976cf8fe7e54c8169b24586b1293b https://www.encodeproject.org/files/ENCFF144FGR/@@download/ENCFF144FGR.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF584WLO bed narrowPeak replicated peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF264USO, ENCFF566EUW, ENCFF962LWN 996632 ENCODE Processing Pipeline 31d7495ea5355080c420414f8511b338 https://www.encodeproject.org/files/ENCFF584WLO/@@download/ENCFF584WLO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF585RYW bam unfiltered alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF374XLP 2986453476 ENCODE Processing Pipeline ffb310da2bea1f6c1f6ee780d2cb39ab https://www.encodeproject.org/files/ENCFF585RYW/@@download/ENCFF585RYW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF469SIO bam unfiltered alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF094DUO 2168256744 ENCODE Processing Pipeline f465befc59b8e3c372d1e9f2e75f270d https://www.encodeproject.org/files/ENCFF469SIO/@@download/ENCFF469SIO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF774QGM bam alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF094DUO 1499880795 ENCODE Processing Pipeline 19449197fd7f64aa7905563574d7c01a https://www.encodeproject.org/files/ENCFF774QGM/@@download/ENCFF774QGM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF742PPH bam alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF374XLP 1952601301 ENCODE Processing Pipeline f4163d686d286dbb0b5f0bebab690b8f https://www.encodeproject.org/files/ENCFF742PPH/@@download/ENCFF742PPH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF465SRI bed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF742PPH 1358755 ENCODE Processing Pipeline 94d5f6f88e09d3c9beb17d38481d08f2 https://www.encodeproject.org/files/ENCFF465SRI/@@download/ENCFF465SRI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF981XPA bed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF774QGM, ENCFF962XXR 1144944 ENCODE Processing Pipeline 877584e5c2221c6f7f09cc6928f77fe0 https://www.encodeproject.org/files/ENCFF981XPA/@@download/ENCFF981XPA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF861RAI bed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF742PPH, ENCFF774QGM, ENCFF962XXR 1519605 ENCODE Processing Pipeline 367cc5533e68377da18b106c8cc28a35 https://www.encodeproject.org/files/ENCFF861RAI/@@download/ENCFF861RAI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF637LGP bigBed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF465SRI 3220084 ENCODE Processing Pipeline 1898330c065b607352f84e08b79df49a https://www.encodeproject.org/files/ENCFF637LGP/@@download/ENCFF637LGP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF722YCF bigBed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF981XPA 2760492 ENCODE Processing Pipeline 3991d733b79f2c1155915c7361bc5fe6 https://www.encodeproject.org/files/ENCFF722YCF/@@download/ENCFF722YCF.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF430NVO bigBed narrowPeak peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF861RAI 4401769 ENCODE Processing Pipeline ddd4a890510bf70f19e1436e60f6c0cb https://www.encodeproject.org/files/ENCFF430NVO/@@download/ENCFF430NVO.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF642KFP bigWig signal p-value ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF742PPH 616377616 ENCODE Processing Pipeline 8aeed54e213fb37576f410888918b56b https://www.encodeproject.org/files/ENCFF642KFP/@@download/ENCFF642KFP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF747TEJ bigWig signal p-value ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF774QGM, ENCFF962XXR 520052102 ENCODE Processing Pipeline 55c53e08ffabf8e9b38ee04618283273 https://www.encodeproject.org/files/ENCFF747TEJ/@@download/ENCFF747TEJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF414WFT bigWig signal p-value ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF742PPH, ENCFF774QGM, ENCFF962XXR 1001591295 ENCODE Processing Pipeline 085ec1d3c40dc8619d69d665f570530f https://www.encodeproject.org/files/ENCFF414WFT/@@download/ENCFF414WFT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF175XHZ bigWig fold change over control ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF742PPH 750784352 ENCODE Processing Pipeline 41034b9d1cfc8c8e7b7f8bd888bd3253 https://www.encodeproject.org/files/ENCFF175XHZ/@@download/ENCFF175XHZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF046YHM bigWig fold change over control ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF774QGM, ENCFF962XXR 616845336 ENCODE Processing Pipeline 73744a836bbc0f578b007255771de905 https://www.encodeproject.org/files/ENCFF046YHM/@@download/ENCFF046YHM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF147ZWY bigWig fold change over control ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF742PPH, ENCFF774QGM, ENCFF962XXR 1350735006 ENCODE Processing Pipeline bf8e4e0f8724dee4dba68cbc2bd1f616 https://www.encodeproject.org/files/ENCFF147ZWY/@@download/ENCFF147ZWY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF736SRQ bed narrowPeak replicated peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF465SRI, ENCFF861RAI, ENCFF981XPA 989477 ENCODE Processing Pipeline d6f3ab4de91dc9e1b7133a52d644b8d3 https://www.encodeproject.org/files/ENCFF736SRQ/@@download/ENCFF736SRQ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF101UBO bigBed narrowPeak replicated peaks ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF736SRQ 2267951 ENCODE Processing Pipeline 97aaa60261e95b250af87d2fadffc576 https://www.encodeproject.org/files/ENCFF101UBO/@@download/ENCFF101UBO.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001JXH bam alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JXW 782046041 Bing Ren, UCSD decdb8c3fdd0fdfcb651c98043db0cb8 https://www.encodeproject.org/files/ENCFF001JXH/@@download/ENCFF001JXH.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001JXI bigBed broadPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XVU 634225 Bing Ren, UCSD 87307c4e7a7383d4a39da12b1abf9c78 https://www.encodeproject.org/files/ENCFF001JXI/@@download/ENCFF001JXI.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001JXJ bam alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JXV 554463220 Bing Ren, UCSD 2822a73f55ffe7cba03806a74ace8001 https://www.encodeproject.org/files/ENCFF001JXJ/@@download/ENCFF001JXJ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001JXM bigWig signal ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JXH, ENCFF001JXJ 60228891 Bing Ren, UCSD 6ccbafaf62b5f2e5b20e1aee4821be47 https://www.encodeproject.org/files/ENCFF001JXM/@@download/ENCFF001JXM.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001JXV fastq reads ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 532423565 Bing Ren, UCSD 41010c5df781c778b2f415273df2f3b9 https://www.encodeproject.org/files/ENCFF001JXV/@@download/ENCFF001JXV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JYM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001JXW fastq reads ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 837700587 Bing Ren, UCSD 36122b3a833278251ce8048a446c7879 https://www.encodeproject.org/files/ENCFF001JXW/@@download/ENCFF001JXW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JYN/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF001XVU bed broadPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JXH, ENCFF001JXJ 406965 Bing Ren, UCSD 54588e059d4693e0a3fb9bf489073427 https://www.encodeproject.org/files/ENCFF001XVU/@@download/ENCFF001XVU.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF488GIK bam unfiltered alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JXV, ENCFF018NEO 605900671 ENCODE Processing Pipeline 1b57e151737a92ee91053d0aef25bc2e https://www.encodeproject.org/files/ENCFF488GIK/@@download/ENCFF488GIK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF258LOK bam unfiltered alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JXW, ENCFF018NEO 814333975 ENCODE Processing Pipeline 0359d9331e88a061d3451d970ed18033 https://www.encodeproject.org/files/ENCFF258LOK/@@download/ENCFF258LOK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF381TPF bam alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JXW, ENCFF018NEO 338307824 ENCODE Processing Pipeline a32d5a6d8ba79051e22b2a1e059bf723 https://www.encodeproject.org/files/ENCFF381TPF/@@download/ENCFF381TPF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF667ERP bam alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JXV, ENCFF018NEO 441587097 ENCODE Processing Pipeline a1b56c203a0e64ff42dc26509d9541b5 https://www.encodeproject.org/files/ENCFF667ERP/@@download/ENCFF667ERP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF980JCK bed narrowPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF249NVZ, ENCFF381TPF, ENCFF543ZVH, ENCFF667ERP 1127731 ENCODE Processing Pipeline 919c49170a05b977d76080a27a14837c https://www.encodeproject.org/files/ENCFF980JCK/@@download/ENCFF980JCK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF930HKU bigBed narrowPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF361NHY 4238555 ENCODE Processing Pipeline 99cc71b6656a50d06354223b8fd08d05 https://www.encodeproject.org/files/ENCFF930HKU/@@download/ENCFF930HKU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF361NHY bed narrowPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF249NVZ, ENCFF381TPF, ENCFF543ZVH 1707360 ENCODE Processing Pipeline 811f990e8f1fef17cb362973587759ac https://www.encodeproject.org/files/ENCFF361NHY/@@download/ENCFF361NHY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF375DOC bed narrowPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF543ZVH, ENCFF667ERP 987893 ENCODE Processing Pipeline aec2d5accd74e1cd44910b228b127985 https://www.encodeproject.org/files/ENCFF375DOC/@@download/ENCFF375DOC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF559QEJ bigBed narrowPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF375DOC 2810550 ENCODE Processing Pipeline d5ae79163b94ea03fb4429cdef37edec https://www.encodeproject.org/files/ENCFF559QEJ/@@download/ENCFF559QEJ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF340CPU bigBed narrowPeak peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF980JCK 3190710 ENCODE Processing Pipeline e79123eea9c78b41e0943349f2385f14 https://www.encodeproject.org/files/ENCFF340CPU/@@download/ENCFF340CPU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF235ULR bigWig signal p-value ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF249NVZ, ENCFF381TPF, ENCFF543ZVH 218455282 ENCODE Processing Pipeline a180876c997207d102215d14fe0dcfa0 https://www.encodeproject.org/files/ENCFF235ULR/@@download/ENCFF235ULR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF611PZV bigWig signal p-value ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF543ZVH, ENCFF667ERP 183218318 ENCODE Processing Pipeline cd7da087a5ba691f02ec067c124cd9ed https://www.encodeproject.org/files/ENCFF611PZV/@@download/ENCFF611PZV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF826DES bigWig signal p-value ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF249NVZ, ENCFF381TPF, ENCFF543ZVH, ENCFF667ERP 329525204 ENCODE Processing Pipeline 0db0ab860c544b7436edc37da134ce69 https://www.encodeproject.org/files/ENCFF826DES/@@download/ENCFF826DES.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF692OFZ bigWig fold change over control ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF249NVZ, ENCFF381TPF, ENCFF543ZVH, ENCFF667ERP 321265803 ENCODE Processing Pipeline 2df0e785eed3994d568b6201cbc79ef4 https://www.encodeproject.org/files/ENCFF692OFZ/@@download/ENCFF692OFZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF471NYK bigWig fold change over control ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF249NVZ, ENCFF381TPF, ENCFF543ZVH 170882278 ENCODE Processing Pipeline b8983def66e8b55d2fe991095e25aa3d https://www.encodeproject.org/files/ENCFF471NYK/@@download/ENCFF471NYK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF778MVZ bigWig fold change over control ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF543ZVH, ENCFF667ERP 166431591 ENCODE Processing Pipeline 0f2e39cd8edbd14d4d336e7626369ad8 https://www.encodeproject.org/files/ENCFF778MVZ/@@download/ENCFF778MVZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF061JZQ bed narrowPeak replicated peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF361NHY, ENCFF375DOC, ENCFF980JCK 1188559 ENCODE Processing Pipeline a28aed82be6a4b2bb9d63534bbe1d355 https://www.encodeproject.org/files/ENCFF061JZQ/@@download/ENCFF061JZQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF987IXH bigBed narrowPeak replicated peaks ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF061JZQ 2521693 ENCODE Processing Pipeline 4b605f0ce43a49d976b49de2c837a28b https://www.encodeproject.org/files/ENCFF987IXH/@@download/ENCFF987IXH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF598ZBW bam alignments ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF086NWP, ENCFF141HSU, ENCFF806TVZ 2875915414 ENCODE Processing Pipeline d38cfac1326e564760fe4316fb13635f https://www.encodeproject.org/files/ENCFF598ZBW/@@download/ENCFF598ZBW.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF707QLI bam alignments ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF430SDY, ENCFF784EVF, ENCFF806TVZ 2850256395 ENCODE Processing Pipeline 40eed7710c71294f6556c9233470332c https://www.encodeproject.org/files/ENCFF707QLI/@@download/ENCFF707QLI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF086NWP fastq reads ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 1621842584 Bing Ren, UCSD b4bdcc0e3518f1ddc4f91ac7c1e292f4 SRA:SRR3651232 https://www.encodeproject.org/files/ENCFF086NWP/@@download/ENCFF086NWP.fastq.gz Illumina HiSeq 2500 /files/ENCFF983QZJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF784EVF fastq reads ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 1838802155 Bing Ren, UCSD 3067d960c94269871325fc6d455f51d9 SRA:SRR3651230 https://www.encodeproject.org/files/ENCFF784EVF/@@download/ENCFF784EVF.fastq.gz Illumina HiSeq 2500 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF430SDY fastq reads ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2278425097 Bing Ren, UCSD bf7575d4563a8dd7bfb5650038aa78dd SRA:SRR3651231 https://www.encodeproject.org/files/ENCFF430SDY/@@download/ENCFF430SDY.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF141HSU fastq reads ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2776266550 Bing Ren, UCSD b30d4d472f702c7f4019c854d9699fa8 SRA:SRR3651233 https://www.encodeproject.org/files/ENCFF141HSU/@@download/ENCFF141HSU.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF763CCA bed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF598ZBW 2597298 ENCODE Processing Pipeline 72be555af166d3977262d7eb4c6f9bca https://www.encodeproject.org/files/ENCFF763CCA/@@download/ENCFF763CCA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF931WYZ bed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF598ZBW, ENCFF707QLI 2425094 ENCODE Processing Pipeline c89d28926da66ea9a75c5079edc4d597 https://www.encodeproject.org/files/ENCFF931WYZ/@@download/ENCFF931WYZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF356LIM bed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF707QLI 2460274 ENCODE Processing Pipeline f121b3f76e12b7dcb4a21e8ea4d7ad9e https://www.encodeproject.org/files/ENCFF356LIM/@@download/ENCFF356LIM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF002ZLI bigBed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF763CCA 5741572 ENCODE Processing Pipeline 7ce82b1c79f1e8296af9ef745d730822 https://www.encodeproject.org/files/ENCFF002ZLI/@@download/ENCFF002ZLI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF465LSJ bigBed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver 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Pipeline 0809af2ad98b11be288a2dbd7ec02024 https://www.encodeproject.org/files/ENCFF932QVM/@@download/ENCFF932QVM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF881VRZ bigWig signal p-value ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF598ZBW 955930697 ENCODE Processing Pipeline 7bbcb85f78db47c49114d898a3dbb123 https://www.encodeproject.org/files/ENCFF881VRZ/@@download/ENCFF881VRZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF578ZSA bigWig signal p-value ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF275UYN, ENCFF301ZSF, ENCFF598ZBW, ENCFF707QLI 1249439604 ENCODE Processing Pipeline b279b4646e83cb3011c0ca20a60e04be https://www.encodeproject.org/files/ENCFF578ZSA/@@download/ENCFF578ZSA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF581LVK bigWig fold change over control ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF275UYN, ENCFF301ZSF, ENCFF707QLI 1053359760 ENCODE Processing Pipeline 015a6825098f8b36b2b82342a51531f8 https://www.encodeproject.org/files/ENCFF581LVK/@@download/ENCFF581LVK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF691VMK bigWig fold change over control ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF598ZBW 1056296314 ENCODE Processing Pipeline 246b1f4b7b9c5b76256137d654d8d6cc 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mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF049CGX bam unfiltered alignments ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF086NWP, ENCFF141HSU 5074999995 ENCODE Processing Pipeline 5feabfd2f5ffac0df789e6e774951d25 https://www.encodeproject.org/files/ENCFF049CGX/@@download/ENCFF049CGX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF173WEE bam alignments ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF430SDY, ENCFF784EVF 2849592633 ENCODE Processing Pipeline cec1b218bb78ba7dbe105fb7ebdbec77 https://www.encodeproject.org/files/ENCFF173WEE/@@download/ENCFF173WEE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF474PYR bam alignments ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF086NWP, ENCFF141HSU 2875369065 ENCODE Processing Pipeline c4e18e9db2645e9f22cd39194f73ec39 https://www.encodeproject.org/files/ENCFF474PYR/@@download/ENCFF474PYR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF038QSA bed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF173WEE, ENCFF231HNB, ENCFF396QPU 2527894 ENCODE Processing Pipeline ee8bcfb9df5326f974d319cf0831ea08 https://www.encodeproject.org/files/ENCFF038QSA/@@download/ENCFF038QSA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF392MDJ bed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF474PYR 2416218 ENCODE Processing Pipeline d4baaa574156bb4099a1b687b23a6f53 https://www.encodeproject.org/files/ENCFF392MDJ/@@download/ENCFF392MDJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF038ABA bed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF173WEE, ENCFF231HNB, ENCFF396QPU, ENCFF474PYR 2584530 ENCODE Processing Pipeline 5a62864accd53b014fd532d9459d13b1 https://www.encodeproject.org/files/ENCFF038ABA/@@download/ENCFF038ABA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF822UYA bigBed narrowPeak peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF392MDJ 5367250 ENCODE Processing Pipeline 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bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF745KXY bigWig signal p-value ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF173WEE, ENCFF231HNB, ENCFF396QPU 1081097172 ENCODE Processing Pipeline 026f7c85e8a7ef073031d7f734764faa https://www.encodeproject.org/files/ENCFF745KXY/@@download/ENCFF745KXY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF199SXB bigWig signal p-value ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF474PYR 927700892 ENCODE Processing Pipeline ebdb91c30f5c68a9cca6aede3aef7e3f https://www.encodeproject.org/files/ENCFF199SXB/@@download/ENCFF199SXB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF379XSC bigWig signal p-value ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF173WEE, ENCFF231HNB, ENCFF396QPU, ENCFF474PYR 1621281973 ENCODE Processing Pipeline 73523fa9e2e20993900fb1404d441443 https://www.encodeproject.org/files/ENCFF379XSC/@@download/ENCFF379XSC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF969CEW bigWig fold change over control ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF173WEE, ENCFF231HNB, ENCFF396QPU 1181238369 ENCODE Processing Pipeline 5fd5e35e0bd15c6687d537457408865f https://www.encodeproject.org/files/ENCFF969CEW/@@download/ENCFF969CEW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF278THP bigWig fold change over control ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF474PYR 942358510 ENCODE Processing Pipeline 3b71a8de3008d7ec160d720b75ed6a3e https://www.encodeproject.org/files/ENCFF278THP/@@download/ENCFF278THP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF813MON bigWig fold change over control ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF173WEE, ENCFF231HNB, ENCFF396QPU, ENCFF474PYR 1686140146 ENCODE Processing Pipeline a1bf8834c54416be50303756c69a4842 https://www.encodeproject.org/files/ENCFF813MON/@@download/ENCFF813MON.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF617EOJ bed narrowPeak replicated peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF038ABA, ENCFF038QSA, ENCFF392MDJ 2409478 ENCODE Processing Pipeline ede79579064030035d1628bb25a608f1 https://www.encodeproject.org/files/ENCFF617EOJ/@@download/ENCFF617EOJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF386BZJ bigBed narrowPeak replicated peaks ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF617EOJ 4005340 ENCODE Processing Pipeline d2c4e3f8056a23b7dcec9229102cc280 https://www.encodeproject.org/files/ENCFF386BZJ/@@download/ENCFF386BZJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001ZUF fastq reads ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 757476701 Bing Ren, UCSD 0b54bf078932878f181f3cb0b8d6a6d3 SRA:SRR3652067 https://www.encodeproject.org/files/ENCFF001ZUF/@@download/ENCFF001ZUF.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, low read depth ENCFF001ZUH fastq reads ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 869478842 Bing Ren, UCSD 67cd0fa7503fceccb87963119054eb97 SRA:SRR3652068 https://www.encodeproject.org/files/ENCFF001ZUH/@@download/ENCFF001ZUH.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, low read depth ENCFF747DAB bam alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUH, ENCFF806TVZ 662627476 ENCODE Processing Pipeline ba9ae7ea764d4ff698645ef0061cf8cb https://www.encodeproject.org/files/ENCFF747DAB/@@download/ENCFF747DAB.bam mm10-minimal archived low read length, low read depth ENCFF082ZEA bam alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUF, ENCFF806TVZ 605667147 ENCODE Processing Pipeline efb3afab649b61487cb73012f0b7d107 https://www.encodeproject.org/files/ENCFF082ZEA/@@download/ENCFF082ZEA.bam mm10-minimal archived low read length, low read depth ENCFF462CBN bigBed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF275FSC 1555060 ENCODE Processing Pipeline c27f3f9e8c782ec4149fa947148b1c02 https://www.encodeproject.org/files/ENCFF462CBN/@@download/ENCFF462CBN.bigBed mm10-minimal archived low read length, low read depth ENCFF026VZV bed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF082ZEA, ENCFF657TOI 496185 ENCODE Processing Pipeline d4c56443824b254d4fe5a2ea63c08ff2 https://www.encodeproject.org/files/ENCFF026VZV/@@download/ENCFF026VZV.bed.gz mm10-minimal archived low read length, low read depth ENCFF246JNU bigBed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF482OFY 1540533 ENCODE Processing Pipeline 44c959d3c4e2f1d591ab52e4ea9ecd31 https://www.encodeproject.org/files/ENCFF246JNU/@@download/ENCFF246JNU.bigBed mm10-minimal archived low read length, low read depth ENCFF951CBA bigWig signal p-value ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF082ZEA, ENCFF657TOI 370767748 ENCODE Processing Pipeline 396835073e9974bc7c0363adcbd80dfd https://www.encodeproject.org/files/ENCFF951CBA/@@download/ENCFF951CBA.bigWig mm10-minimal archived low read length, low read depth ENCFF275FSC bed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF747DAB 467365 ENCODE Processing Pipeline 190eb9cdccdeab2dac394e96f248faa7 https://www.encodeproject.org/files/ENCFF275FSC/@@download/ENCFF275FSC.bed.gz mm10-minimal archived low read length, low read depth ENCFF482OFY bed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF082ZEA, ENCFF657TOI, ENCFF747DAB 469185 ENCODE Processing Pipeline b4a21ce5d9743ffdcb23926ac5c2b228 https://www.encodeproject.org/files/ENCFF482OFY/@@download/ENCFF482OFY.bed.gz mm10-minimal archived low read length, low read depth ENCFF184JJL bigBed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026VZV 1640865 ENCODE Processing Pipeline ffe0edad215f291e8bd1ea1587e2eb8a https://www.encodeproject.org/files/ENCFF184JJL/@@download/ENCFF184JJL.bigBed mm10-minimal archived low read length, low read depth ENCFF205AAK bigWig signal p-value ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF747DAB 362649074 ENCODE Processing Pipeline 3b5741124f8bd80741387c962e3d82b2 https://www.encodeproject.org/files/ENCFF205AAK/@@download/ENCFF205AAK.bigWig mm10-minimal archived low read length, low read depth ENCFF626EOV bigWig signal p-value ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF082ZEA, ENCFF657TOI, ENCFF747DAB 483804598 ENCODE Processing Pipeline 05825f4241493005ad8612a2139759a6 https://www.encodeproject.org/files/ENCFF626EOV/@@download/ENCFF626EOV.bigWig mm10-minimal archived low read length, low read depth ENCFF228PEW bigWig fold change over control ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF747DAB 324502683 ENCODE Processing Pipeline de2287d5403c7633f5ad40e95f40da71 https://www.encodeproject.org/files/ENCFF228PEW/@@download/ENCFF228PEW.bigWig mm10-minimal archived low read length, low read depth ENCFF880CFW bigWig fold change over control ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF082ZEA, ENCFF657TOI 293376455 ENCODE Processing Pipeline 941380cb144fdd71a68c8703666be91e https://www.encodeproject.org/files/ENCFF880CFW/@@download/ENCFF880CFW.bigWig mm10-minimal archived low read length, low read depth ENCFF129AGV bigBed narrowPeak replicated peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF334PAF 1410729 ENCODE Processing Pipeline f6aac28921ade9e953d9a5af285b11b1 https://www.encodeproject.org/files/ENCFF129AGV/@@download/ENCFF129AGV.bigBed mm10-minimal archived low read length, low read depth ENCFF445ERQ bigWig fold change over control ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF082ZEA, ENCFF657TOI, ENCFF747DAB 496460236 ENCODE Processing Pipeline 6d9b930f848797d72e24b6d907d00697 https://www.encodeproject.org/files/ENCFF445ERQ/@@download/ENCFF445ERQ.bigWig mm10-minimal archived low read length, low read depth ENCFF334PAF bed narrowPeak replicated peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026VZV, ENCFF275FSC, ENCFF482OFY 565865 ENCODE Processing Pipeline bb9c25da1f897a4bc2159ddb5177a7a6 https://www.encodeproject.org/files/ENCFF334PAF/@@download/ENCFF334PAF.bed.gz mm10-minimal archived low read length, low read depth ENCFF661MCZ bam unfiltered alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUF, ENCFF018NEO 942952407 ENCODE Processing Pipeline d62b7edc88767cf5babe632b447697fd https://www.encodeproject.org/files/ENCFF661MCZ/@@download/ENCFF661MCZ.bam mm10 released low read length, low read depth ENCFF518HYX bam unfiltered alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUH, ENCFF018NEO 1064961028 ENCODE Processing Pipeline b76f105d0d73433ae560b9c8a963ad4a https://www.encodeproject.org/files/ENCFF518HYX/@@download/ENCFF518HYX.bam mm10 released low read length, low read depth ENCFF439ENR bam alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUH, ENCFF018NEO 662427566 ENCODE Processing Pipeline 348c0e359bf66fc9faeb1c991e9e37cb https://www.encodeproject.org/files/ENCFF439ENR/@@download/ENCFF439ENR.bam mm10 released low read length, low read depth ENCFF242GSM bam alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUF, ENCFF018NEO 605469374 ENCODE Processing Pipeline 0d0b85fc15f267ab33b83caecb70bfc8 https://www.encodeproject.org/files/ENCFF242GSM/@@download/ENCFF242GSM.bam mm10 released low read length, low read depth ENCFF713LDG bed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF439ENR, ENCFF735XMC 468049 ENCODE Processing Pipeline d1799f7ea67fe9b48e787712d4d570af https://www.encodeproject.org/files/ENCFF713LDG/@@download/ENCFF713LDG.bed.gz mm10 released low read length, low read depth ENCFF237MNX bed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF242GSM, ENCFF735XMC 496659 ENCODE Processing Pipeline 8ea71c4d043b0e25c0fd307c48f5f220 https://www.encodeproject.org/files/ENCFF237MNX/@@download/ENCFF237MNX.bed.gz mm10 released low read length, low read depth ENCFF478LGD bed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF242GSM, ENCFF439ENR, ENCFF735XMC 457326 ENCODE Processing Pipeline 0e3d135afd0479c92d581cd192a058cd https://www.encodeproject.org/files/ENCFF478LGD/@@download/ENCFF478LGD.bed.gz mm10 released low read length, low read depth ENCFF663HMC bigBed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF713LDG 1556972 ENCODE Processing Pipeline c97fa38b7148cca8d5c10edcc586ef1b https://www.encodeproject.org/files/ENCFF663HMC/@@download/ENCFF663HMC.bigBed mm10 released low read length, low read depth ENCFF281PGH bigBed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF237MNX 1642807 ENCODE Processing Pipeline ec896cac13b043a91caec39d66157da9 https://www.encodeproject.org/files/ENCFF281PGH/@@download/ENCFF281PGH.bigBed mm10 released low read length, low read depth ENCFF353UQR bigBed narrowPeak peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF478LGD 1513752 ENCODE Processing Pipeline 65dbd779c9d969e5fb325c1d3607c93a https://www.encodeproject.org/files/ENCFF353UQR/@@download/ENCFF353UQR.bigBed mm10 released low read length, low read depth ENCFF623WED bigWig signal p-value ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF439ENR, ENCFF735XMC 342490877 ENCODE Processing Pipeline f88b35533176a39e8a15acf847d64eb6 https://www.encodeproject.org/files/ENCFF623WED/@@download/ENCFF623WED.bigWig mm10 released low read length, low read depth ENCFF859KWW bigWig signal p-value ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF242GSM, ENCFF735XMC 333665232 ENCODE Processing Pipeline 05cad0d3e9662f473bdedc1b8901dc1f https://www.encodeproject.org/files/ENCFF859KWW/@@download/ENCFF859KWW.bigWig mm10 released low read length, low read depth ENCFF673DQV bigWig signal p-value ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF242GSM, ENCFF439ENR, ENCFF735XMC 499819702 ENCODE Processing Pipeline e285d0ebc5de8ba36149a9d93a3f4036 https://www.encodeproject.org/files/ENCFF673DQV/@@download/ENCFF673DQV.bigWig mm10 released low read length, low read depth ENCFF192OWA bigWig fold change over control ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF439ENR, ENCFF735XMC 324691000 ENCODE Processing Pipeline 2ba60c27b6e267bca2fbf8d34b4ca8b1 https://www.encodeproject.org/files/ENCFF192OWA/@@download/ENCFF192OWA.bigWig mm10 released low read length, low read depth ENCFF016LIO bigWig fold change over control ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF242GSM, ENCFF735XMC 293148905 ENCODE Processing Pipeline f0e06b8aaacb19488deace498bf05417 https://www.encodeproject.org/files/ENCFF016LIO/@@download/ENCFF016LIO.bigWig mm10 released low read length, low read depth ENCFF638WLA bigWig fold change over control ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF242GSM, ENCFF439ENR, ENCFF735XMC 502392606 ENCODE Processing Pipeline 25178aa8f2d36edc7bf138dd73d3ca30 https://www.encodeproject.org/files/ENCFF638WLA/@@download/ENCFF638WLA.bigWig mm10 released low read length, low read depth ENCFF232UTI bed narrowPeak replicated peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF237MNX, ENCFF478LGD, ENCFF713LDG 564952 ENCODE Processing Pipeline 670b5200f48b11418f3659e7f58cd55c https://www.encodeproject.org/files/ENCFF232UTI/@@download/ENCFF232UTI.bed.gz mm10 released low read length, low read depth ENCFF441DLX bigBed narrowPeak replicated peaks ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF232UTI 1407702 ENCODE Processing Pipeline fa7e980ec06bb0422c23a37e9a873f21 https://www.encodeproject.org/files/ENCFF441DLX/@@download/ENCFF441DLX.bigBed mm10 released low read length, low read depth ENCFF001KUZ bigBed broadPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZB 2587075 Bing Ren, UCSD 864c989baba6ff51b38cff3b06c1780f https://www.encodeproject.org/files/ENCFF001KUZ/@@download/ENCFF001KUZ.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KVA bam alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KVI 1729153414 Bing Ren, UCSD d3d8d9a819da9743ef3bc0ff0159464b https://www.encodeproject.org/files/ENCFF001KVA/@@download/ENCFF001KVA.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KVB bam alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KVK 2556061524 Bing Ren, UCSD a821b41524fea96f7a28f3ae84b59b28 https://www.encodeproject.org/files/ENCFF001KVB/@@download/ENCFF001KVB.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KVC bigWig signal ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KVA, ENCFF001KVB 69013318 Bing Ren, UCSD 541161fed4f5bdd882800c31bb9d7d40 https://www.encodeproject.org/files/ENCFF001KVC/@@download/ENCFF001KVC.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KVI fastq reads ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1694412143 Bing Ren, UCSD 3c8179be677fbdd7dbbc850cf51b3698 https://www.encodeproject.org/files/ENCFF001KVI/@@download/ENCFF001KVI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KWE/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF001KVK fastq reads ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 2475252816 Bing Ren, UCSD 012e2b98038c85eca67daad192f99a19 https://www.encodeproject.org/files/ENCFF001KVK/@@download/ENCFF001KVK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KVR/ released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XZB bed broadPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KVA, ENCFF001KVB 1811787 Bing Ren, UCSD bbd91baca381246136a922c946ad27ed https://www.encodeproject.org/files/ENCFF001XZB/@@download/ENCFF001XZB.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF076UCY bam unfiltered alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KVI, ENCFF018NEO 1715336780 ENCODE Processing Pipeline 52c2d0f2dce39dbdb369f3d55598f8f2 https://www.encodeproject.org/files/ENCFF076UCY/@@download/ENCFF076UCY.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF627IPL bam unfiltered alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KVK, ENCFF018NEO 2540649052 ENCODE Processing Pipeline f63f157497da00a865e633b6c99853ac https://www.encodeproject.org/files/ENCFF627IPL/@@download/ENCFF627IPL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF419UYK bam alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KVI, ENCFF018NEO 952269288 ENCODE Processing Pipeline ca6da49defbc7b42f636793784fc6fe5 https://www.encodeproject.org/files/ENCFF419UYK/@@download/ENCFF419UYK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF493BXF bam alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KVK, ENCFF018NEO 1465309308 ENCODE Processing Pipeline ded78b35a40c1ea66d256d104427e8d8 https://www.encodeproject.org/files/ENCFF493BXF/@@download/ENCFF493BXF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF928MFK bed narrowPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF314OGN, ENCFF419UYK, ENCFF493BXF, ENCFF705BZU 3104359 ENCODE Processing Pipeline eb6d44953b7238b8f0cbbb128835cb15 https://www.encodeproject.org/files/ENCFF928MFK/@@download/ENCFF928MFK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF218DGO bigWig signal p-value ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF314OGN, ENCFF493BXF, ENCFF705BZU 680787246 ENCODE Processing Pipeline 4b23fc4fb931b75fea8c6252a8488cc9 https://www.encodeproject.org/files/ENCFF218DGO/@@download/ENCFF218DGO.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF903LGX bigWig signal p-value ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF314OGN, ENCFF419UYK, ENCFF705BZU 545932537 ENCODE Processing Pipeline 5b08a7164165f4281d0f5cd8f718e51b https://www.encodeproject.org/files/ENCFF903LGX/@@download/ENCFF903LGX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF911TSZ bigWig fold change over control ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF314OGN, ENCFF419UYK, ENCFF493BXF, ENCFF705BZU 936331809 ENCODE Processing Pipeline b55a0c00b391a1cd048def1bd6e45b6a https://www.encodeproject.org/files/ENCFF911TSZ/@@download/ENCFF911TSZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF721DET bed narrowPeak replicated peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF107ZOR, ENCFF362AJY, ENCFF928MFK 3396655 ENCODE Processing Pipeline 7e96add4407c1828efb2e23c508dd938 https://www.encodeproject.org/files/ENCFF721DET/@@download/ENCFF721DET.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF362AJY bed narrowPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF314OGN, ENCFF419UYK, ENCFF705BZU 3990723 ENCODE Processing Pipeline 2f3473f095dba4459590506a2b555ec7 https://www.encodeproject.org/files/ENCFF362AJY/@@download/ENCFF362AJY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF233UEZ bigBed narrowPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF928MFK 7259326 ENCODE Processing Pipeline f80f9577e4ac65f42910903e551e9b98 https://www.encodeproject.org/files/ENCFF233UEZ/@@download/ENCFF233UEZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF446RHX bigWig fold change over control ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF314OGN, ENCFF419UYK, ENCFF705BZU 497346392 ENCODE Processing Pipeline 4d7420d49aedc18e571726997282b348 https://www.encodeproject.org/files/ENCFF446RHX/@@download/ENCFF446RHX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF739GSZ bigBed narrowPeak replicated peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF721DET 6197067 ENCODE Processing Pipeline 28f5d9ce134503fe34415f0ec2b779ad https://www.encodeproject.org/files/ENCFF739GSZ/@@download/ENCFF739GSZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF107ZOR bed narrowPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF314OGN, ENCFF493BXF, ENCFF705BZU 2758062 ENCODE Processing Pipeline 369e1e0599f73062cb381dedc5d7ba5f https://www.encodeproject.org/files/ENCFF107ZOR/@@download/ENCFF107ZOR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF307CQK bigBed narrowPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF362AJY 9280373 ENCODE Processing Pipeline d17d2af82b017f0095c4349f34350729 https://www.encodeproject.org/files/ENCFF307CQK/@@download/ENCFF307CQK.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF280UMM bigWig signal p-value ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF314OGN, ENCFF419UYK, ENCFF493BXF, ENCFF705BZU 673779489 ENCODE Processing Pipeline b82dd9b88d9fdffaa8acb11393d097bf https://www.encodeproject.org/files/ENCFF280UMM/@@download/ENCFF280UMM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF238NYL bigBed narrowPeak peaks ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF107ZOR 6888711 ENCODE Processing Pipeline f574fbe64eabd5ef6d31898c913671ed https://www.encodeproject.org/files/ENCFF238NYL/@@download/ENCFF238NYL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF371YPX bigWig fold change over control ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF314OGN, ENCFF493BXF, ENCFF705BZU 678962864 ENCODE Processing Pipeline 2d270c9409fa2430aae342ee377bce4a https://www.encodeproject.org/files/ENCFF371YPX/@@download/ENCFF371YPX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF665HAL bam alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF596PCR, ENCFF662PLM, ENCFF806TVZ 2710132693 ENCODE Processing Pipeline 19ff9b19300f930642b2a74c614c4dda https://www.encodeproject.org/files/ENCFF665HAL/@@download/ENCFF665HAL.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF662PLM fastq reads ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2933324591 Bing Ren, UCSD f6b90532e257e8c3aef43bbdd0c9e4dd SRA:SRR3651700 https://www.encodeproject.org/files/ENCFF662PLM/@@download/ENCFF662PLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF802AQP fastq reads ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3014800913 Bing Ren, UCSD 42f3fc24d79ddc3ebb31561267d92e4b SRA:SRR3651702 https://www.encodeproject.org/files/ENCFF802AQP/@@download/ENCFF802AQP.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF596PCR fastq reads ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 179986710 Bing Ren, UCSD 79c6db1b344aac548ca3da2f4103c47d SRA:SRR3651701 https://www.encodeproject.org/files/ENCFF596PCR/@@download/ENCFF596PCR.fastq.gz Illumina HiSeq 2500 /files/ENCFF890PHI/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF418YDX bam alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF802AQP, ENCFF806TVZ 2716940151 ENCODE Processing Pipeline 39da88a935a5670b05aaab50bd19eed8 https://www.encodeproject.org/files/ENCFF418YDX/@@download/ENCFF418YDX.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF865AGW bed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF330HOT, ENCFF493BXI, ENCFF665HAL 3421535 ENCODE Processing Pipeline fb42a5ee555d8b7b5ed64134a4b212d6 https://www.encodeproject.org/files/ENCFF865AGW/@@download/ENCFF865AGW.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF077MMK bed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF418YDX, ENCFF493BXI 3300749 ENCODE Processing Pipeline 61c069dcacbf021793e61bcfe1bbbc4e https://www.encodeproject.org/files/ENCFF077MMK/@@download/ENCFF077MMK.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF117MTQ bigBed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF077MMK 6702743 ENCODE Processing Pipeline 5b01ff891af2c42628bc2b03acb79186 https://www.encodeproject.org/files/ENCFF117MTQ/@@download/ENCFF117MTQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF654LDZ bed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF330HOT, ENCFF418YDX, ENCFF493BXI, ENCFF665HAL 3060935 ENCODE Processing Pipeline f6e4e2633b4a901e47f9a05f73d0aff4 https://www.encodeproject.org/files/ENCFF654LDZ/@@download/ENCFF654LDZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF265FYY bigBed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF865AGW 6919925 ENCODE Processing Pipeline 30a55d9ac8c402572f33c56ca72fd5dd https://www.encodeproject.org/files/ENCFF265FYY/@@download/ENCFF265FYY.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF667IEZ bigWig signal p-value ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF418YDX, ENCFF493BXI 872346824 ENCODE Processing Pipeline 9e2fc5ed9f74e0c1cee4770a69c5d593 https://www.encodeproject.org/files/ENCFF667IEZ/@@download/ENCFF667IEZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF196CZT bigBed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF654LDZ 8106066 ENCODE Processing Pipeline d4dd620a042bac260c6a483e5c50cbd9 https://www.encodeproject.org/files/ENCFF196CZT/@@download/ENCFF196CZT.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF493IBZ bigWig signal p-value ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF330HOT, ENCFF493BXI, ENCFF665HAL 877085573 ENCODE Processing Pipeline 69b547d62a5cc7ec02c8ab6f1d9f8241 https://www.encodeproject.org/files/ENCFF493IBZ/@@download/ENCFF493IBZ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF004BJN bigWig signal p-value ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF330HOT, ENCFF418YDX, ENCFF493BXI, ENCFF665HAL 1228874156 ENCODE Processing Pipeline 0b588fe512d040f5923bf58472519864 https://www.encodeproject.org/files/ENCFF004BJN/@@download/ENCFF004BJN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF814NTB bigWig fold change over control ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF418YDX, ENCFF493BXI 998166139 ENCODE Processing Pipeline c15d05bcb9fdc2540fd1df170c00ebdc https://www.encodeproject.org/files/ENCFF814NTB/@@download/ENCFF814NTB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF184PJO bigWig fold change over control ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF330HOT, ENCFF493BXI, ENCFF665HAL 1015114558 ENCODE Processing Pipeline 56663f88498cdb9831ffffb02dc500c1 https://www.encodeproject.org/files/ENCFF184PJO/@@download/ENCFF184PJO.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF064XEC bigWig fold change over control ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF330HOT, ENCFF418YDX, ENCFF493BXI, ENCFF665HAL 1534074314 ENCODE Processing Pipeline ae6dd5ef04f4c8df37420e641a4ea971 https://www.encodeproject.org/files/ENCFF064XEC/@@download/ENCFF064XEC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF624QOF bigBed narrowPeak replicated peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF310SVO 6487865 ENCODE Processing Pipeline b5e901cb64ed2db02d23b91ab63e3dfa https://www.encodeproject.org/files/ENCFF624QOF/@@download/ENCFF624QOF.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF310SVO bed narrowPeak replicated peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF077MMK, ENCFF654LDZ, ENCFF865AGW 3036430 ENCODE Processing Pipeline 17d5e14d7565f3860b76069292692a18 https://www.encodeproject.org/files/ENCFF310SVO/@@download/ENCFF310SVO.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF294HOY bam unfiltered alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF596PCR, ENCFF662PLM 3676859652 ENCODE Processing Pipeline 45c38e33b301d96c1a3f8d2171449559 https://www.encodeproject.org/files/ENCFF294HOY/@@download/ENCFF294HOY.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF540JQN bam unfiltered alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF802AQP 3568935289 ENCODE Processing Pipeline ce180c78a5e74f1dc3afb0eea51945a1 https://www.encodeproject.org/files/ENCFF540JQN/@@download/ENCFF540JQN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF855HHK bam alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF596PCR, ENCFF662PLM 2709596056 ENCODE Processing Pipeline 97254da6158dcb3352b452daad03b0d6 https://www.encodeproject.org/files/ENCFF855HHK/@@download/ENCFF855HHK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF578EIN bam alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF802AQP 2716382748 ENCODE Processing Pipeline fce83824288c2f339ad55be86984c39b https://www.encodeproject.org/files/ENCFF578EIN/@@download/ENCFF578EIN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF296NPF bed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF578EIN 3341776 ENCODE Processing Pipeline 2feb83f07e941a00c1488564b7943e56 https://www.encodeproject.org/files/ENCFF296NPF/@@download/ENCFF296NPF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF542AXU bed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF279URC, ENCFF855HHK, ENCFF893IOJ 3246596 ENCODE Processing Pipeline 382be2ed8eb502249b4cf4717c7ac7e0 https://www.encodeproject.org/files/ENCFF542AXU/@@download/ENCFF542AXU.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF009BLP bed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF578EIN, ENCFF855HHK, ENCFF893IOJ 3735187 ENCODE Processing Pipeline 3e46453d00388dc442f7cab3c2b51f1c https://www.encodeproject.org/files/ENCFF009BLP/@@download/ENCFF009BLP.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF464AOJ bigBed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF296NPF 6753806 ENCODE Processing Pipeline a3ab9473ff6d8d21d2c11d05152e0cb1 https://www.encodeproject.org/files/ENCFF464AOJ/@@download/ENCFF464AOJ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF558CEL bigBed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF542AXU 8568011 ENCODE Processing Pipeline c63316b6e36902b4c90a542a450ef2cb https://www.encodeproject.org/files/ENCFF558CEL/@@download/ENCFF558CEL.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF668FVC bigBed narrowPeak peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF009BLP 9780373 ENCODE Processing Pipeline cdd0445505d704b970d1545c8079ef0f https://www.encodeproject.org/files/ENCFF668FVC/@@download/ENCFF668FVC.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF883YAC bigWig signal p-value ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF578EIN 751294972 ENCODE Processing Pipeline e917788f9ef2b1f86b4c66954e664ed2 https://www.encodeproject.org/files/ENCFF883YAC/@@download/ENCFF883YAC.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF812BAG bigWig signal p-value ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF279URC, ENCFF855HHK, ENCFF893IOJ 1056495555 ENCODE Processing Pipeline 42284db40fd84c9994b22d2e904cedae https://www.encodeproject.org/files/ENCFF812BAG/@@download/ENCFF812BAG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF012UAY bigWig signal p-value ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF578EIN, ENCFF855HHK, ENCFF893IOJ 1578878180 ENCODE Processing Pipeline f69d811a204f605687adfde86b5f59fa https://www.encodeproject.org/files/ENCFF012UAY/@@download/ENCFF012UAY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF840FYD bigWig fold change over control ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF279URC, ENCFF578EIN 921933830 ENCODE Processing Pipeline b31e407bae14d56afbda3d176f7b0e8d https://www.encodeproject.org/files/ENCFF840FYD/@@download/ENCFF840FYD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF966JUV bigWig fold change over control ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF279URC, ENCFF855HHK, ENCFF893IOJ 1100547108 ENCODE Processing Pipeline 63123c9645e10ab95b7cc8e44203edec https://www.encodeproject.org/files/ENCFF966JUV/@@download/ENCFF966JUV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF218NHY bigWig fold change over control ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF279URC, ENCFF578EIN, ENCFF855HHK, ENCFF893IOJ 1607208420 ENCODE Processing Pipeline c1e3c3fc0471064375ed2ef4afe63594 https://www.encodeproject.org/files/ENCFF218NHY/@@download/ENCFF218NHY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF215FWT bed narrowPeak replicated peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF009BLP, ENCFF296NPF, ENCFF542AXU 3150470 ENCODE Processing Pipeline c15a693979fd6d62e318218ddba5ae23 https://www.encodeproject.org/files/ENCFF215FWT/@@download/ENCFF215FWT.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF022CFC bigBed narrowPeak replicated peaks ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF215FWT 6559143 ENCODE Processing Pipeline e8238475bbd15ba9980ded5b6acce921 https://www.encodeproject.org/files/ENCFF022CFC/@@download/ENCFF022CFC.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KFK bigBed broadPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWY 658853 Bing Ren, UCSD 2d24f27fca6ac96840d207d67bcd90e6 https://www.encodeproject.org/files/ENCFF001KFK/@@download/ENCFF001KFK.bigBed mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFL bam alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KFR 1161224312 Bing Ren, UCSD b5836739b5998332f82c65ce1054898a https://www.encodeproject.org/files/ENCFF001KFL/@@download/ENCFF001KFL.bam mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFM bam alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KFX 1712898218 Bing Ren, UCSD d5920eadfa050048750d954520a1a6c4 https://www.encodeproject.org/files/ENCFF001KFM/@@download/ENCFF001KFM.bam mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFN bigWig signal ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 55092567 Bing Ren, UCSD 5068c6d4977d36367ef30fc05e323a42 https://www.encodeproject.org/files/ENCFF001KFN/@@download/ENCFF001KFN.bigWig mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFR fastq reads ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1175173067 Bing Ren, UCSD 2ac5b1a688a0870fcee9b2275e74fb87 https://www.encodeproject.org/files/ENCFF001KFR/@@download/ENCFF001KFR.fastq.gz Illumina HiSeq 2000 /files/ENCFF071UWJ/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFX fastq reads ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1974516796 Bing Ren, UCSD bbb4fa34d9c6c8162264ef84bd7072b6 https://www.encodeproject.org/files/ENCFF001KFX/@@download/ENCFF001KFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF659VUB/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XWY bed broadPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 393659 Bing Ren, UCSD 37497f3fc2a15db831dc3e1e6e7c1472 https://www.encodeproject.org/files/ENCFF001XWY/@@download/ENCFF001XWY.bed.gz mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF113HZD bam unfiltered alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFR, ENCFF018NEO 1233021274 ENCODE Processing Pipeline b8018469f86e67c76d3304e651622756 https://www.encodeproject.org/files/ENCFF113HZD/@@download/ENCFF113HZD.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF312BIG bam unfiltered alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFX, ENCFF018NEO 1555185898 ENCODE Processing Pipeline 70617c2b54b52e8f132da031e84c9458 https://www.encodeproject.org/files/ENCFF312BIG/@@download/ENCFF312BIG.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF210FOM bam alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFR, ENCFF018NEO 545487929 ENCODE Processing Pipeline 9791de47e4998ee5c93f0a1a90a416f7 https://www.encodeproject.org/files/ENCFF210FOM/@@download/ENCFF210FOM.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF016JGX bam alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFX, ENCFF018NEO 230123534 ENCODE Processing Pipeline 51956f0154cd2166f539ce4eff11a0ef https://www.encodeproject.org/files/ENCFF016JGX/@@download/ENCFF016JGX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF186PJM bed narrowPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF210FOM, ENCFF318EHA, ENCFF682ICT 2202045 ENCODE Processing Pipeline 64ced8fbf377e470277a5ce56783a301 https://www.encodeproject.org/files/ENCFF186PJM/@@download/ENCFF186PJM.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF587LEB bed narrowPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF016JGX, ENCFF210FOM, ENCFF318EHA, ENCFF682ICT 1562513 ENCODE Processing Pipeline f876ace12fceeaff48fa586c5317a30c https://www.encodeproject.org/files/ENCFF587LEB/@@download/ENCFF587LEB.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF824OIP bed narrowPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF016JGX, ENCFF318EHA, ENCFF682ICT 1079674 ENCODE Processing Pipeline 2688163779ad5281e1bc3493bbe465a9 https://www.encodeproject.org/files/ENCFF824OIP/@@download/ENCFF824OIP.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF191TQE bigBed narrowPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF186PJM 5788195 ENCODE Processing Pipeline 8eeebfd01b12dea514f219504d06506c https://www.encodeproject.org/files/ENCFF191TQE/@@download/ENCFF191TQE.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF670DHJ bigWig signal p-value ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF016JGX, ENCFF318EHA, ENCFF682ICT 278728929 ENCODE Processing Pipeline 93c0d19378face246d28b937946a2b62 https://www.encodeproject.org/files/ENCFF670DHJ/@@download/ENCFF670DHJ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF067BBE bigBed narrowPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF824OIP 3031743 ENCODE Processing Pipeline 55f98ce7e3ac4b8e3b4404e4a2ca80aa https://www.encodeproject.org/files/ENCFF067BBE/@@download/ENCFF067BBE.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF230RNU bigWig signal p-value ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF016JGX, ENCFF210FOM, ENCFF318EHA, ENCFF682ICT 453734685 ENCODE Processing Pipeline ce57fa42f336e7b811da3f55f254802f https://www.encodeproject.org/files/ENCFF230RNU/@@download/ENCFF230RNU.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF460OAS bigWig signal p-value ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF210FOM, ENCFF318EHA, ENCFF682ICT 351299401 ENCODE Processing Pipeline e3c295c4ea01ccade3effab546202db3 https://www.encodeproject.org/files/ENCFF460OAS/@@download/ENCFF460OAS.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF614SAC bigBed narrowPeak peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF587LEB 3889176 ENCODE Processing Pipeline d7b2877d3cc99cd70cd258e93b73159f https://www.encodeproject.org/files/ENCFF614SAC/@@download/ENCFF614SAC.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF875PDV bigWig fold change over control ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF210FOM, ENCFF318EHA, ENCFF682ICT 286249967 ENCODE Processing Pipeline 903aca269f144d72020bd5a74b9b243e https://www.encodeproject.org/files/ENCFF875PDV/@@download/ENCFF875PDV.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF384AXU bigWig fold change over control ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF016JGX, ENCFF318EHA, ENCFF682ICT 148299575 ENCODE Processing Pipeline 4f14a17d8a936e26cbc24a0db549fc4e https://www.encodeproject.org/files/ENCFF384AXU/@@download/ENCFF384AXU.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF163HEV bigWig fold change over control ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF016JGX, ENCFF210FOM, ENCFF318EHA, ENCFF682ICT 373069033 ENCODE Processing Pipeline 63528160c4e806a85090befbebc6c312 https://www.encodeproject.org/files/ENCFF163HEV/@@download/ENCFF163HEV.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF188LEW bigBed narrowPeak replicated peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF194TQD 2187258 ENCODE Processing Pipeline 7d10b112002e254c7a831f3c22293de0 https://www.encodeproject.org/files/ENCFF188LEW/@@download/ENCFF188LEW.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF194TQD bed narrowPeak replicated peaks ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF186PJM, ENCFF587LEB, ENCFF824OIP 947632 ENCODE Processing Pipeline b8355fedae078cc816d322bd1d7414df https://www.encodeproject.org/files/ENCFF194TQD/@@download/ENCFF194TQD.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001LTK bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LTR 185659890 Bing Ren, UCSD 478eacde64fc5716e3735c9f31883b86 https://www.encodeproject.org/files/ENCFF001LTK/@@download/ENCFF001LTK.bam mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTN bigBed broadPeak peaks ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YBF 329653 Bing Ren, UCSD eebd22e1d1d62247bc686aa6b6aa7ae5 https://www.encodeproject.org/files/ENCFF001LTN/@@download/ENCFF001LTN.bigBed mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTO bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LTX 952996533 Bing Ren, UCSD 3df2c15c0fbfc7f123078129d8896da7 https://www.encodeproject.org/files/ENCFF001LTO/@@download/ENCFF001LTO.bam mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTR fastq reads ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 178693182 Bing Ren, UCSD e31c12d864929dc493483dc7c6f688de https://www.encodeproject.org/files/ENCFF001LTR/@@download/ENCFF001LTR.fastq.gz Illumina Genome Analyzer II /files/ENCFF786ODW/ released mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTS bigWig signal ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LTK, ENCFF001LTO 65820298 Bing Ren, UCSD 75568f2de3e6decf1dda62c845685d93 https://www.encodeproject.org/files/ENCFF001LTS/@@download/ENCFF001LTS.bigWig mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LTX fastq reads ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 999605431 Bing Ren, UCSD a997b11a58c8a7116f3b13569159b463 https://www.encodeproject.org/files/ENCFF001LTX/@@download/ENCFF001LTX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001YBF bed broadPeak peaks ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LTK, ENCFF001LTO 201288 Bing Ren, UCSD 5d3ae942b79391265fe2e37230f1b348 https://www.encodeproject.org/files/ENCFF001YBF/@@download/ENCFF001YBF.bed.gz mm9 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF427VLH bam unfiltered alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTR, ENCFF018NEO 199538742 ENCODE Processing Pipeline a27ab651f6965396fee2191eacfca71f https://www.encodeproject.org/files/ENCFF427VLH/@@download/ENCFF427VLH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF717PNP bam unfiltered alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTX, ENCFF018NEO 981161050 ENCODE Processing Pipeline 5883f67adb14ef662ba87b9ea89fc851 https://www.encodeproject.org/files/ENCFF717PNP/@@download/ENCFF717PNP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF692RQR bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTR, ENCFF018NEO 110683993 ENCODE Processing Pipeline 480d7d9a9c102d9360cd8f4440032bcf https://www.encodeproject.org/files/ENCFF692RQR/@@download/ENCFF692RQR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF038FZW bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTX, ENCFF018NEO 200699036 ENCODE Processing Pipeline 5eb0f861d497d02e5142a2ad329a9389 https://www.encodeproject.org/files/ENCFF038FZW/@@download/ENCFF038FZW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF019VFL bam alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF436QHR, ENCFF806TVZ, ENCFF894HPP 3042846501 ENCODE Processing Pipeline 35a1dc1de16cf0a9d7cf4b6dadffbdd1 https://www.encodeproject.org/files/ENCFF019VFL/@@download/ENCFF019VFL.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF297PGM bam alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF010VIL, ENCFF370WFQ, ENCFF806TVZ 2972880105 ENCODE Processing Pipeline 407a493f74c7f0b3755dbe0208dd7a76 https://www.encodeproject.org/files/ENCFF297PGM/@@download/ENCFF297PGM.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF894HPP fastq reads ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2881662167 Bing Ren, UCSD e1c11a9b9539a4447f26577c969bd655 SRA:SRR3652121 https://www.encodeproject.org/files/ENCFF894HPP/@@download/ENCFF894HPP.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF436QHR fastq reads ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 1418190923 Bing Ren, UCSD 9af7e0ab7092bb2e8302f360fba4f045 SRA:SRR3652122 https://www.encodeproject.org/files/ENCFF436QHR/@@download/ENCFF436QHR.fastq.gz Illumina HiSeq 2500 /files/ENCFF586JAL/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF010VIL fastq reads ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 956139986 Bing Ren, UCSD 5df4d609722d0222ad34308cd8284a68 SRA:SRR3652119 https://www.encodeproject.org/files/ENCFF010VIL/@@download/ENCFF010VIL.fastq.gz Illumina HiSeq 2500 /files/ENCFF890PHI/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF370WFQ fastq reads ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3092332147 Bing Ren, UCSD 45268e70e8decfb225012d76a5ac08e2 SRA:SRR3652120 https://www.encodeproject.org/files/ENCFF370WFQ/@@download/ENCFF370WFQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF063IMY bigBed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF045IKL 6356428 ENCODE Processing Pipeline 306f1c82a4ed5663efa3052b83c998d4 https://www.encodeproject.org/files/ENCFF063IMY/@@download/ENCFF063IMY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF059QHB bed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF019VFL, ENCFF330HOT, ENCFF493BXI 2981240 ENCODE Processing Pipeline ad065306a22a5f4d40f705487401299d https://www.encodeproject.org/files/ENCFF059QHB/@@download/ENCFF059QHB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF045IKL bed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF297PGM, ENCFF330HOT, ENCFF493BXI 2916261 ENCODE Processing Pipeline fdeb6c9dbc97d83be3c122c929c2d5f1 https://www.encodeproject.org/files/ENCFF045IKL/@@download/ENCFF045IKL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF941XIQ bed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF019VFL, ENCFF297PGM, ENCFF330HOT, ENCFF493BXI 2809036 ENCODE Processing Pipeline 8a66368f52f6aba698f28589d4c776a2 https://www.encodeproject.org/files/ENCFF941XIQ/@@download/ENCFF941XIQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF525MHZ bigBed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF059QHB 6485673 ENCODE Processing Pipeline ee3571fb075bab8379a46d75c3d7925d https://www.encodeproject.org/files/ENCFF525MHZ/@@download/ENCFF525MHZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF799HGX bigBed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF941XIQ 6030329 ENCODE Processing Pipeline 75d9df95e8d27f97e496716851f912e0 https://www.encodeproject.org/files/ENCFF799HGX/@@download/ENCFF799HGX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF247DMT bigWig signal p-value ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF019VFL, ENCFF330HOT, ENCFF493BXI 1051770326 ENCODE Processing Pipeline 60cd6a2a01d6c2752a8e9a97d4b867ad https://www.encodeproject.org/files/ENCFF247DMT/@@download/ENCFF247DMT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF526DOK bigWig signal p-value ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF297PGM, ENCFF330HOT, ENCFF493BXI 768107863 ENCODE Processing Pipeline ecd26c4f0750c25a02eecdd750fffe37 https://www.encodeproject.org/files/ENCFF526DOK/@@download/ENCFF526DOK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF635DCF bigWig signal p-value ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF019VFL, ENCFF297PGM, ENCFF330HOT, ENCFF493BXI 1163196236 ENCODE Processing Pipeline 279a1746fc6d44d19e0625adacbfef39 https://www.encodeproject.org/files/ENCFF635DCF/@@download/ENCFF635DCF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF987CZC bigWig fold change over control ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF019VFL, ENCFF330HOT, ENCFF493BXI 1053477118 ENCODE Processing Pipeline 9eaa029ffba21fb4c326e42858297d62 https://www.encodeproject.org/files/ENCFF987CZC/@@download/ENCFF987CZC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF487JTL bigWig fold change over control ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF297PGM, ENCFF330HOT, ENCFF493BXI 1057278943 ENCODE Processing Pipeline 23a835af9c00032f23b99931909bd575 https://www.encodeproject.org/files/ENCFF487JTL/@@download/ENCFF487JTL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF022YNY bed narrowPeak replicated peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF045IKL, ENCFF059QHB, ENCFF941XIQ 2836812 ENCODE Processing Pipeline aed1c7bc31e233710acac571f17cb60d https://www.encodeproject.org/files/ENCFF022YNY/@@download/ENCFF022YNY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF217SSO bigBed narrowPeak replicated peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF022YNY 4934126 ENCODE Processing Pipeline 143603fc6673e1c3da70b008facc7474 https://www.encodeproject.org/files/ENCFF217SSO/@@download/ENCFF217SSO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF032YDP bigWig fold change over control ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF019VFL, ENCFF297PGM, ENCFF330HOT, ENCFF493BXI 1554869071 ENCODE Processing Pipeline 76755b01e68fecabc3e69183b3b29087 https://www.encodeproject.org/files/ENCFF032YDP/@@download/ENCFF032YDP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF914DGX bam unfiltered alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF436QHR, ENCFF894HPP 5003841124 ENCODE Processing Pipeline f5da4149fbb5057288729322790f6c63 https://www.encodeproject.org/files/ENCFF914DGX/@@download/ENCFF914DGX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF264ONX bam unfiltered alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF010VIL, ENCFF018NEO, ENCFF370WFQ 4743772972 ENCODE Processing Pipeline dedb683f2a225f25537a68f6c71e59c1 https://www.encodeproject.org/files/ENCFF264ONX/@@download/ENCFF264ONX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF260JQL bam alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF436QHR, ENCFF894HPP 3042177580 ENCODE Processing Pipeline 4b6aee24b6c860802ca573107e8d31cd https://www.encodeproject.org/files/ENCFF260JQL/@@download/ENCFF260JQL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF988OVD bam alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF010VIL, ENCFF018NEO, ENCFF370WFQ 2972223056 ENCODE Processing Pipeline d33aca271c68aec13411645ecf95bafc https://www.encodeproject.org/files/ENCFF988OVD/@@download/ENCFF988OVD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF877CTL bed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF260JQL, ENCFF279URC, ENCFF893IOJ 3027191 ENCODE Processing Pipeline cfa767431395d2a459175233ebe164f3 https://www.encodeproject.org/files/ENCFF877CTL/@@download/ENCFF877CTL.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF810HMB bed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF893IOJ, ENCFF988OVD 2599640 ENCODE Processing Pipeline 86e8b4fe1259cf3fd4fd9839b7e2da10 https://www.encodeproject.org/files/ENCFF810HMB/@@download/ENCFF810HMB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF585AOW bed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF260JQL, ENCFF279URC, ENCFF893IOJ, ENCFF988OVD 3025105 ENCODE Processing Pipeline e590021961e0f46071a348903d06b339 https://www.encodeproject.org/files/ENCFF585AOW/@@download/ENCFF585AOW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF410ZHP bigBed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF877CTL 6623080 ENCODE Processing Pipeline ca49d963be78006c4b3cf9b20db9b4fa https://www.encodeproject.org/files/ENCFF410ZHP/@@download/ENCFF410ZHP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF505PEN bigBed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF810HMB 5726008 ENCODE Processing Pipeline ba255378a102d30a7229307a6051dc61 https://www.encodeproject.org/files/ENCFF505PEN/@@download/ENCFF505PEN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF730APE bigBed narrowPeak peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF585AOW 6577418 ENCODE Processing Pipeline 8d48cffbf2246cb93fd038c1058d7af8 https://www.encodeproject.org/files/ENCFF730APE/@@download/ENCFF730APE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF428LVK bigWig signal p-value ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF260JQL, ENCFF279URC, ENCFF893IOJ 899768245 ENCODE Processing Pipeline 1be98429f9407e224028ae00713014d5 https://www.encodeproject.org/files/ENCFF428LVK/@@download/ENCFF428LVK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF096SEP bigWig signal p-value ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF893IOJ, ENCFF988OVD 861358931 ENCODE Processing Pipeline 969867be28174ac8e9e59cec54528c0c https://www.encodeproject.org/files/ENCFF096SEP/@@download/ENCFF096SEP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF253UHG bigWig signal p-value ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF260JQL, ENCFF279URC, ENCFF893IOJ, ENCFF988OVD 1572604575 ENCODE Processing Pipeline cb0bb15fa6b5c8e9b89bc04789f91d4b https://www.encodeproject.org/files/ENCFF253UHG/@@download/ENCFF253UHG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF301GSY bigWig fold change over control ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF260JQL, ENCFF279URC, ENCFF893IOJ 1215099361 ENCODE Processing Pipeline 08e739585b22f4c3b8f84d5b14d4ed0f https://www.encodeproject.org/files/ENCFF301GSY/@@download/ENCFF301GSY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF674GPZ bigWig fold change over control ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF893IOJ, ENCFF988OVD 946246649 ENCODE Processing Pipeline 58ba29abb633d0fc3a65e37c8207e890 https://www.encodeproject.org/files/ENCFF674GPZ/@@download/ENCFF674GPZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF350KKE bigWig fold change over control ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF260JQL, ENCFF279URC, ENCFF893IOJ, ENCFF988OVD 1688175436 ENCODE Processing Pipeline 5a1ed2a8966be1da13eb235782585f1d https://www.encodeproject.org/files/ENCFF350KKE/@@download/ENCFF350KKE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF013JOA bed narrowPeak replicated peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF585AOW, ENCFF810HMB, ENCFF877CTL 2609547 ENCODE Processing Pipeline bcf4587ed04f7bfa0d40de173f14adaa https://www.encodeproject.org/files/ENCFF013JOA/@@download/ENCFF013JOA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF765TMD bigBed narrowPeak replicated peaks ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF013JOA 4498331 ENCODE Processing Pipeline 5333f47b1d9ce78c34415c9c1fd23054 https://www.encodeproject.org/files/ENCFF765TMD/@@download/ENCFF765TMD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001IFW bigBed narrowPeak peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVB 977467 Barbara Wold, Caltech 163a2349c5b7de6a8b882a339008d003 https://www.encodeproject.org/files/ENCFF001IFW/@@download/ENCFF001IFW.bigBed mm9 released control low read depth, low read depth insufficient read length ENCFF001IFX fastq reads ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 753641541 Barbara Wold, Caltech c42bc9afc1c8f9096f8fa020d5b49605 https://www.encodeproject.org/files/ENCFF001IFX/@@download/ENCFF001IFX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released control low read depth, low read depth insufficient read length ENCFF001IFY fastq reads ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 816435375 Barbara Wold, Caltech f2e59b403158c5553e1fec532a795d11 https://www.encodeproject.org/files/ENCFF001IFY/@@download/ENCFF001IFY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ released control low read depth, low read depth insufficient read length ENCFF001IFZ bigWig signal ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGJ 143223352 Barbara Wold, Caltech 89dd0b649d76e7e884d3b84f8235f921 https://www.encodeproject.org/files/ENCFF001IFZ/@@download/ENCFF001IFZ.bigWig mm9 released control low read depth, low read depth insufficient read length ENCFF001IGJ bam alignments ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF001IFX, ENCFF001IFY 1664946822 Barbara Wold, Caltech e86303979b940517297f5d60f8c8b226 https://www.encodeproject.org/files/ENCFF001IGJ/@@download/ENCFF001IGJ.bam mm9 released control low read depth, low read depth insufficient read length ENCFF001XVB bed narrowPeak peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001IGJ 516228 Barbara Wold, Caltech 428594dd0e085d4a11e822873ca04cda https://www.encodeproject.org/files/ENCFF001XVB/@@download/ENCFF001XVB.bed.gz mm9 released control low read depth, low read depth insufficient read length ENCFF578DNF bam alignments ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFX, ENCFF001IFY, ENCFF018NEO 749420778 ENCODE Processing Pipeline 7e1a6af875ad8ca1c9cffdcc5254c594 https://www.encodeproject.org/files/ENCFF578DNF/@@download/ENCFF578DNF.bam mm10 released control low read depth, low read depth insufficient read length ENCFF645KBC bam unfiltered alignments ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFX, ENCFF001IFY, ENCFF018NEO 1726265709 ENCODE Processing Pipeline 7b1143901b352680d3598b0c088cbf73 https://www.encodeproject.org/files/ENCFF645KBC/@@download/ENCFF645KBC.bam mm10 released control low read depth, low read depth insufficient read length ENCFF019XFU bigWig signal p-value ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF578DNF 355905384 ENCODE Processing Pipeline ed3168c4fc68d6dbe410dc85ae1d5a35 https://www.encodeproject.org/files/ENCFF019XFU/@@download/ENCFF019XFU.bigWig mm10 released control low read depth, low read depth insufficient read length ENCFF684POA bed narrowPeak peaks and background as input for IDR ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF578DNF 6090800 ENCODE Processing Pipeline 1856aa68938472ba26b78ba387769876 https://www.encodeproject.org/files/ENCFF684POA/@@download/ENCFF684POA.bed.gz mm10 released control low read depth, low read depth insufficient read length ENCFF323UQU bigWig fold change over control ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF258NUS, ENCFF578DNF 237307181 ENCODE Processing Pipeline e2bd647135efa06fcb7d79d288a55b76 https://www.encodeproject.org/files/ENCFF323UQU/@@download/ENCFF323UQU.bigWig mm10 released control low read depth, low read depth insufficient read length ENCFF540QPX bigBed narrowPeak peaks and background as input for IDR ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF684POA 11596039 ENCODE Processing Pipeline b6eb12e52222dddca49bcb625c412c8c https://www.encodeproject.org/files/ENCFF540QPX/@@download/ENCFF540QPX.bigBed mm10 released control low read depth, low read depth insufficient read length ENCFF748JFS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF684POA 487096 ENCODE Processing Pipeline 60c4179c86a00b222f594d04831cfe4e https://www.encodeproject.org/files/ENCFF748JFS/@@download/ENCFF748JFS.bed.gz mm10 released control low read depth, low read depth insufficient read length ENCFF080FFJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF748JFS 1080375 ENCODE Processing Pipeline 0150213cda5636aa5ad5af9bbd4ea86a https://www.encodeproject.org/files/ENCFF080FFJ/@@download/ENCFF080FFJ.bigBed mm10 released control low read depth, low read depth insufficient read length ENCFF001KMC bigBed broadPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE ENCFF001XXW 624579 Bing Ren, UCSD c5bc513511772e9d4d35d5ba0cd94a71 https://www.encodeproject.org/files/ENCFF001KMC/@@download/ENCFF001KMC.bigBed mm9 archived low read length, inconsistent platforms, low read depth insufficient read depth ENCFF001KMD bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KMJ 505856886 Bing Ren, UCSD b806f715f38d177960055a460b564994 https://www.encodeproject.org/files/ENCFF001KMD/@@download/ENCFF001KMD.bam mm9 archived low read length, inconsistent platforms, low read depth insufficient read depth ENCFF001KME bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KMK 561424325 Bing Ren, UCSD e51057756555822ed657463e04f8beb1 https://www.encodeproject.org/files/ENCFF001KME/@@download/ENCFF001KME.bam mm9 archived low read length, inconsistent platforms, low read depth insufficient read depth ENCFF001KMF bigWig signal ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 59050075 Bing Ren, UCSD 25fa6df9ef1ec2944185b4ffdad52b21 https://www.encodeproject.org/files/ENCFF001KMF/@@download/ENCFF001KMF.bigWig mm9 archived low read length, inconsistent platforms, low read depth missing derived_from insufficient read depth ENCFF001KMJ fastq reads ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 493734856 Bing Ren, UCSD 3f8fe1f465090034705b9499f6e30c99 https://www.encodeproject.org/files/ENCFF001KMJ/@@download/ENCFF001KMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KOE/ released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF001KMK fastq reads ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 553352934 Bing Ren, UCSD 6e0451b61e9ac5c4f8493dd640636481 https://www.encodeproject.org/files/ENCFF001KMK/@@download/ENCFF001KMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNZ/ released low read length, inconsistent platforms, inconsistent control read length, low read depth insufficient read depth ENCFF001XXW bed broadPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 388768 Bing Ren, UCSD d794c41acc0e861fc70d3c02df101613 https://www.encodeproject.org/files/ENCFF001XXW/@@download/ENCFF001XXW.bed.gz mm9 archived low read length, inconsistent platforms, low read depth missing derived_from insufficient read depth ENCFF485LNM bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KMK, ENCFF806TVZ 423543271 ENCODE Processing Pipeline c0be566541d9d046ab12d686ee13df46 https://www.encodeproject.org/files/ENCFF485LNM/@@download/ENCFF485LNM.bam mm10-minimal archived low read length, inconsistent platforms, low read depth insufficient read depth ENCFF061ZPH bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KMJ, ENCFF806TVZ 392788994 ENCODE Processing Pipeline 8472d8a6e8695ec3be0241a60b96f980 https://www.encodeproject.org/files/ENCFF061ZPH/@@download/ENCFF061ZPH.bam mm10-minimal archived low read length, inconsistent platforms, low read depth insufficient read depth ENCFF758CGF bed narrowPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF061ZPH, ENCFF094RYR, ENCFF485LNM, ENCFF735UNG 1610351 ENCODE Processing Pipeline 256ddd9d9d6f794d1c311ea4108e3306 https://www.encodeproject.org/files/ENCFF758CGF/@@download/ENCFF758CGF.bed.gz mm10-minimal archived low read length, inconsistent platforms, low read depth insufficient read depth ENCFF564QSJ bam unfiltered alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMK, ENCFF018NEO 601903875 ENCODE Processing Pipeline f8d5699b31b94f38caeefb3ecc704867 https://www.encodeproject.org/files/ENCFF564QSJ/@@download/ENCFF564QSJ.bam mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF791TSR bam unfiltered alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMJ, ENCFF018NEO 543119406 ENCODE Processing Pipeline 1106e94e0c6ee610ce73db4be147cdec https://www.encodeproject.org/files/ENCFF791TSR/@@download/ENCFF791TSR.bam mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF511IUJ bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMJ, ENCFF018NEO 392748972 ENCODE Processing Pipeline 5c0e61f6ea0087b5c69333fc5df470b1 https://www.encodeproject.org/files/ENCFF511IUJ/@@download/ENCFF511IUJ.bam mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF939TYA bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMK, ENCFF018NEO 423508419 ENCODE Processing Pipeline 421efdab3e771e36b9af77aaabd7eec2 https://www.encodeproject.org/files/ENCFF939TYA/@@download/ENCFF939TYA.bam mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF337UTH bed narrowPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF443AQP, ENCFF511IUJ 1259054 ENCODE Processing Pipeline fc001c0eed993f592e1d9f2e294bf8c6 https://www.encodeproject.org/files/ENCFF337UTH/@@download/ENCFF337UTH.bed.gz mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF043RSG bed narrowPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF171WKN, ENCFF443AQP, ENCFF511IUJ, ENCFF939TYA 1610500 ENCODE Processing Pipeline 0bb93d4ec0295b933ce997b598e28f5f https://www.encodeproject.org/files/ENCFF043RSG/@@download/ENCFF043RSG.bed.gz mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF847HHS bigBed narrowPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF337UTH 3424905 ENCODE Processing Pipeline bc399b576d0a1059cd70403bb7d79a36 https://www.encodeproject.org/files/ENCFF847HHS/@@download/ENCFF847HHS.bigBed mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF422EHA bigBed narrowPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF043RSG 4252445 ENCODE Processing Pipeline f2fb79225a8a1f24c00598040b17973e https://www.encodeproject.org/files/ENCFF422EHA/@@download/ENCFF422EHA.bigBed mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF607CVL bed narrowPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF171WKN, ENCFF443AQP, ENCFF939TYA 1420615 ENCODE Processing Pipeline a32f2f4713ff70be3fc83a917063158e https://www.encodeproject.org/files/ENCFF607CVL/@@download/ENCFF607CVL.bed.gz mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF121YIH bigWig signal p-value ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF443AQP, ENCFF511IUJ 303713484 ENCODE Processing Pipeline 951c576b4c20cc7de79166952a91734d https://www.encodeproject.org/files/ENCFF121YIH/@@download/ENCFF121YIH.bigWig mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF681DMI bigBed narrowPeak peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF607CVL 3844356 ENCODE Processing Pipeline 05fb6b0fbfbbdf05a9d68c85773548a6 https://www.encodeproject.org/files/ENCFF681DMI/@@download/ENCFF681DMI.bigBed mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF993ODY bigWig signal p-value ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF171WKN, ENCFF443AQP, ENCFF939TYA 306141233 ENCODE Processing Pipeline 580b5f4a283c5381537169c2288537f0 https://www.encodeproject.org/files/ENCFF993ODY/@@download/ENCFF993ODY.bigWig mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF405UZH bigWig signal p-value ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF171WKN, ENCFF443AQP, ENCFF511IUJ, ENCFF939TYA 418073181 ENCODE Processing Pipeline a871f3af0f50b712c5644d2ba9f8f9f8 https://www.encodeproject.org/files/ENCFF405UZH/@@download/ENCFF405UZH.bigWig mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF506KCT bigWig fold change over control ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF171WKN, ENCFF443AQP, ENCFF511IUJ, ENCFF939TYA 350431829 ENCODE Processing Pipeline 8f1c743e48e3e817ec4a050c5f6e8bc2 https://www.encodeproject.org/files/ENCFF506KCT/@@download/ENCFF506KCT.bigWig mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF992DKH bigWig fold change over control ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF171WKN, ENCFF443AQP, ENCFF511IUJ 211917712 ENCODE Processing Pipeline 3d17125e5357fee87db201761fe170c0 https://www.encodeproject.org/files/ENCFF992DKH/@@download/ENCFF992DKH.bigWig mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF824DFY bigWig fold change over control ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF171WKN, ENCFF443AQP, ENCFF939TYA 222974644 ENCODE Processing Pipeline 439afe79f0d7cfcad7a67c485ebd12bd https://www.encodeproject.org/files/ENCFF824DFY/@@download/ENCFF824DFY.bigWig mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF764IFT bed narrowPeak replicated peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF043RSG, ENCFF337UTH, ENCFF607CVL 1405603 ENCODE Processing Pipeline de41443e9e4b60de4ff051b93a5d4650 https://www.encodeproject.org/files/ENCFF764IFT/@@download/ENCFF764IFT.bed.gz mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF050DNO bigBed narrowPeak replicated peaks ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF764IFT 2774175 ENCODE Processing Pipeline 16a3b34a2f8bf86734f94b1964e652f6 https://www.encodeproject.org/files/ENCFF050DNO/@@download/ENCFF050DNO.bigBed mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF001KQG bam alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KQS 1185450846 Bing Ren, UCSD 6bcd12c3f0a202ec247acdb7c09d6ac5 https://www.encodeproject.org/files/ENCFF001KQG/@@download/ENCFF001KQG.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KQH bam alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KQT 934308186 Bing Ren, UCSD 8f9d5da54875edf2061e34e5a4a09c3e https://www.encodeproject.org/files/ENCFF001KQH/@@download/ENCFF001KQH.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KQI bigBed broadPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XYL 1530833 Bing Ren, UCSD 0fb0cf2eb31459a5ff31ff06e0b24a52 https://www.encodeproject.org/files/ENCFF001KQI/@@download/ENCFF001KQI.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KQM bigWig signal ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KQG, ENCFF001KQH 74257482 Bing Ren, UCSD 1461cfc7529831d66d7da302035ac03f https://www.encodeproject.org/files/ENCFF001KQM/@@download/ENCFF001KQM.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KQS fastq reads ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1138521359 Bing Ren, UCSD 55d7d401cda892a445946650254fbf4c https://www.encodeproject.org/files/ENCFF001KQS/@@download/ENCFF001KQS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KQT fastq reads ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 895202247 Bing Ren, UCSD ffe31d18e06f47a7dbc12d63271cf421 https://www.encodeproject.org/files/ENCFF001KQT/@@download/ENCFF001KQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001XYL bed broadPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KQG, ENCFF001KQH 913697 Bing Ren, UCSD 8230e296dd06c1c32feb0213d5ec93ad https://www.encodeproject.org/files/ENCFF001XYL/@@download/ENCFF001XYL.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF694PSM bam unfiltered alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KQT, ENCFF018NEO 1021992528 ENCODE Processing Pipeline c75af1064cc4ca44368d65a78b454c7c https://www.encodeproject.org/files/ENCFF694PSM/@@download/ENCFF694PSM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF725NLU bam alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KQT, ENCFF018NEO 519109831 ENCODE Processing Pipeline 9acebcb688f021bcc588c7a00e1a09c6 https://www.encodeproject.org/files/ENCFF725NLU/@@download/ENCFF725NLU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF843DWM bam unfiltered alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KQS, ENCFF018NEO 1303772940 ENCODE Processing Pipeline db9e3298b2387e3bba3a8028d926c57d https://www.encodeproject.org/files/ENCFF843DWM/@@download/ENCFF843DWM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF570QUU bam alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KQS, ENCFF018NEO 710672449 ENCODE Processing Pipeline cd57b815d3a78ff4154a6c671ecffa40 https://www.encodeproject.org/files/ENCFF570QUU/@@download/ENCFF570QUU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF467ETI bed narrowPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF725NLU, ENCFF780TFB 488741 ENCODE Processing Pipeline 95105a8d56375d97233799636c7bb114 https://www.encodeproject.org/files/ENCFF467ETI/@@download/ENCFF467ETI.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF198ZNV bed narrowPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF342BIA, ENCFF570QUU, ENCFF780TFB 1532868 ENCODE Processing Pipeline bd6bd59e948560fc4e2b8da05f2e4a91 https://www.encodeproject.org/files/ENCFF198ZNV/@@download/ENCFF198ZNV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF410DYY bed narrowPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF342BIA, ENCFF570QUU, ENCFF725NLU, ENCFF780TFB 1189603 ENCODE Processing Pipeline 44eb22df7c41e972befa918c0843eda9 https://www.encodeproject.org/files/ENCFF410DYY/@@download/ENCFF410DYY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF532GXS bigBed narrowPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF467ETI 1056575 ENCODE Processing Pipeline 6f529a166888ef06b22003d4de7c3830 https://www.encodeproject.org/files/ENCFF532GXS/@@download/ENCFF532GXS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF282WXB bigBed narrowPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF198ZNV 3500750 ENCODE Processing Pipeline cfe2da512d9b941971146c5ef8a523fa https://www.encodeproject.org/files/ENCFF282WXB/@@download/ENCFF282WXB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF419ALV bigBed narrowPeak peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF410DYY 2718605 ENCODE Processing Pipeline 60fd546f1d4ade7a5f51095ac7eb82ea https://www.encodeproject.org/files/ENCFF419ALV/@@download/ENCFF419ALV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF618KNJ bigWig signal p-value ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF342BIA, ENCFF570QUU, ENCFF780TFB 293443289 ENCODE Processing Pipeline 7d6615e785ef1c71743c2d7db6cc3597 https://www.encodeproject.org/files/ENCFF618KNJ/@@download/ENCFF618KNJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF529HTA bigWig signal p-value ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF725NLU, ENCFF780TFB 169715721 ENCODE Processing Pipeline b22c5803468f78719c88d6c06c6d1458 https://www.encodeproject.org/files/ENCFF529HTA/@@download/ENCFF529HTA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF389NNF bigWig signal p-value ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF342BIA, ENCFF570QUU, ENCFF725NLU, ENCFF780TFB 307030808 ENCODE Processing Pipeline 2c4144b58e78077cf8dd06a6046f46e4 https://www.encodeproject.org/files/ENCFF389NNF/@@download/ENCFF389NNF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF718YXM bigWig fold change over control ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF725NLU, ENCFF780TFB 181165378 ENCODE Processing Pipeline 88c5efba179a8aef7d54ace0d4e76180 https://www.encodeproject.org/files/ENCFF718YXM/@@download/ENCFF718YXM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF029TZQ bigWig fold change over control ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF342BIA, ENCFF570QUU, ENCFF725NLU, ENCFF780TFB 417833939 ENCODE Processing Pipeline 8d5d95f9f99b2a14ce51d92d3ad5c7d8 https://www.encodeproject.org/files/ENCFF029TZQ/@@download/ENCFF029TZQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF252TVQ bigWig fold change over control ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF342BIA, ENCFF570QUU, ENCFF780TFB 272073723 ENCODE Processing Pipeline b8205960f26f044434a499ae789c93d0 https://www.encodeproject.org/files/ENCFF252TVQ/@@download/ENCFF252TVQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF885GBS bed narrowPeak replicated peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF198ZNV, ENCFF410DYY, ENCFF467ETI 986374 ENCODE Processing Pipeline dcf3aea6b8589be6aa77445d69aacf15 https://www.encodeproject.org/files/ENCFF885GBS/@@download/ENCFF885GBS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF752ONI bigBed narrowPeak replicated peaks ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF885GBS 1974830 ENCODE Processing Pipeline f369bf79d4eaef9a38f92b3c88be4e37 https://www.encodeproject.org/files/ENCFF752ONI/@@download/ENCFF752ONI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF002ANB fastq reads ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1368531380 Bing Ren, UCSD 7f5d5c96d1d45a003de96b9d03108eec SRA:SRR3653190 https://www.encodeproject.org/files/ENCFF002ANB/@@download/ENCFF002ANB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQS/ released low read length, inconsistent control read length, low read depth ENCFF002AND fastq reads ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1139557550 Bing Ren, UCSD 65264956a0d2e5f3bc3507d605c20283 SRA:SRR3653189 https://www.encodeproject.org/files/ENCFF002AND/@@download/ENCFF002AND.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQU/ released low read length, inconsistent control read length, low read depth ENCFF518XMT bam alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANB, ENCFF806TVZ 867538546 ENCODE Processing Pipeline 90eb00c243776a801bb74f0db278025d https://www.encodeproject.org/files/ENCFF518XMT/@@download/ENCFF518XMT.bam mm10-minimal archived low read length, low read depth ENCFF297IPM bam alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AND, ENCFF806TVZ 718946488 ENCODE Processing Pipeline c4ee80ed366e76c162737a769753e4b9 https://www.encodeproject.org/files/ENCFF297IPM/@@download/ENCFF297IPM.bam mm10-minimal archived low read length, low read depth ENCFF531NXB bed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297IPM, ENCFF518XMT, ENCFF720UVE, ENCFF977HMC 679850 ENCODE Processing Pipeline 8a4a392abb13c0426f03abc5402bed8e https://www.encodeproject.org/files/ENCFF531NXB/@@download/ENCFF531NXB.bed.gz mm10-minimal archived low read length, low read depth ENCFF874AWT bed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF518XMT, ENCFF977HMC 603614 ENCODE Processing Pipeline 870162eb941be1a4054f8d2831a0a1b4 https://www.encodeproject.org/files/ENCFF874AWT/@@download/ENCFF874AWT.bed.gz mm10-minimal archived low read length, low read depth ENCFF279VRH bigBed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF874AWT 1953330 ENCODE Processing Pipeline b06140cb68136016558d0a433b067471 https://www.encodeproject.org/files/ENCFF279VRH/@@download/ENCFF279VRH.bigBed mm10-minimal archived low read length, low read depth ENCFF477KPU bigBed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF589NDI 1912143 ENCODE Processing Pipeline 9b7bc633ff50cca77d86548461388879 https://www.encodeproject.org/files/ENCFF477KPU/@@download/ENCFF477KPU.bigBed mm10-minimal archived low read length, low read depth ENCFF589NDI bed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297IPM, ENCFF720UVE 575316 ENCODE Processing Pipeline c3cf3a53c4eced4ba897a4ce826cba61 https://www.encodeproject.org/files/ENCFF589NDI/@@download/ENCFF589NDI.bed.gz mm10-minimal archived low read length, low read depth ENCFF434EPT bigBed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF531NXB 2071664 ENCODE Processing Pipeline 2d141ad56b0ee5168da7d56d143fef30 https://www.encodeproject.org/files/ENCFF434EPT/@@download/ENCFF434EPT.bigBed mm10-minimal archived low read length, low read depth ENCFF988GVQ bigWig signal p-value ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF518XMT, ENCFF977HMC 440272043 ENCODE Processing Pipeline 695c6bab8d785eb5aecb721a7cfab098 https://www.encodeproject.org/files/ENCFF988GVQ/@@download/ENCFF988GVQ.bigWig mm10-minimal archived low read length, low read depth ENCFF890PEF bigWig signal p-value ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297IPM, ENCFF720UVE 355111396 ENCODE Processing Pipeline 0ba771c1449fdc3e099cb2ee679bfca5 https://www.encodeproject.org/files/ENCFF890PEF/@@download/ENCFF890PEF.bigWig mm10-minimal archived low read length, low read depth ENCFF389YLN bigWig signal p-value ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297IPM, ENCFF518XMT, ENCFF720UVE, ENCFF977HMC 683837464 ENCODE Processing Pipeline 1c9a2435ed6b9558fff7f6fc26298e25 https://www.encodeproject.org/files/ENCFF389YLN/@@download/ENCFF389YLN.bigWig mm10-minimal archived low read length, low read depth ENCFF339VJJ bigWig fold change over control ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF518XMT, ENCFF977HMC 399310147 ENCODE Processing Pipeline fce503bd2da91128f2a655749081c13a https://www.encodeproject.org/files/ENCFF339VJJ/@@download/ENCFF339VJJ.bigWig mm10-minimal archived low read length, low read depth ENCFF136NNE bigWig fold change over control ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF297IPM, ENCFF720UVE 307342304 ENCODE Processing Pipeline 3aeefe103c473208214996354400bed2 https://www.encodeproject.org/files/ENCFF136NNE/@@download/ENCFF136NNE.bigWig mm10-minimal archived low read length, low read depth ENCFF892LBX bigWig fold change over control ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF297IPM, ENCFF518XMT, ENCFF720UVE, ENCFF977HMC 739811991 ENCODE Processing Pipeline 88f67865251c8d807bd39ebdab3f137a https://www.encodeproject.org/files/ENCFF892LBX/@@download/ENCFF892LBX.bigWig mm10-minimal archived low read length, low read depth ENCFF792ZUZ bigBed narrowPeak replicated peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF163ITT 1743373 ENCODE Processing Pipeline 194e7e98216681d1f40702b93b873048 https://www.encodeproject.org/files/ENCFF792ZUZ/@@download/ENCFF792ZUZ.bigBed mm10-minimal archived low read length, low read depth ENCFF163ITT bed narrowPeak replicated peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF531NXB, ENCFF589NDI, ENCFF874AWT 749382 ENCODE Processing Pipeline 215423a892d9bb8f499e4e64552fcb19 https://www.encodeproject.org/files/ENCFF163ITT/@@download/ENCFF163ITT.bed.gz mm10-minimal archived low read length, low read depth ENCFF651WDM bam unfiltered alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AND, ENCFF018NEO 1141527490 ENCODE Processing Pipeline 061c515e32d4f061aedf786c86d185ab https://www.encodeproject.org/files/ENCFF651WDM/@@download/ENCFF651WDM.bam mm10 released low read length, low read depth ENCFF734GIN bam unfiltered alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANB, ENCFF018NEO 1370764808 ENCODE Processing Pipeline 6e31d7708a6bb8fa49b076d296056e37 https://www.encodeproject.org/files/ENCFF734GIN/@@download/ENCFF734GIN.bam mm10 released low read length, low read depth ENCFF025FTE bam alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AND, ENCFF018NEO 718803038 ENCODE Processing Pipeline 8b2f706e5d58740a4321690b1d572ee2 https://www.encodeproject.org/files/ENCFF025FTE/@@download/ENCFF025FTE.bam mm10 released low read length, low read depth ENCFF186BBQ bam alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANB, ENCFF018NEO 867371045 ENCODE Processing Pipeline 969359302db303c930fe8aafe7c7c0d9 https://www.encodeproject.org/files/ENCFF186BBQ/@@download/ENCFF186BBQ.bam mm10 released low read length, low read depth ENCFF564AMM bed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025FTE, ENCFF979XVT 563597 ENCODE Processing Pipeline fee4f3fe72bc1ff0d388ac059b245733 https://www.encodeproject.org/files/ENCFF564AMM/@@download/ENCFF564AMM.bed.gz mm10 released low read length, low read depth ENCFF071SAI bigBed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF107BBT 1949320 ENCODE Processing Pipeline 6a77bccdbe6e261589906f99ca5f9007 https://www.encodeproject.org/files/ENCFF071SAI/@@download/ENCFF071SAI.bigBed mm10 released low read length, low read depth ENCFF409COX bigBed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF053NYM 2041622 ENCODE Processing Pipeline 2fb172309cddf62b9f2899c1534d8e03 https://www.encodeproject.org/files/ENCFF409COX/@@download/ENCFF409COX.bigBed mm10 released low read length, low read depth ENCFF479FJN bigBed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF564AMM 1872516 ENCODE Processing Pipeline f2c59ecfbb9d978e73f63c84a4c46612 https://www.encodeproject.org/files/ENCFF479FJN/@@download/ENCFF479FJN.bigBed mm10 released low read length, low read depth ENCFF107BBT bed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF186BBQ, ENCFF322DCQ 602685 ENCODE Processing Pipeline 590fb6411cda6385bab7261fb8a92cb1 https://www.encodeproject.org/files/ENCFF107BBT/@@download/ENCFF107BBT.bed.gz mm10 released low read length, low read depth ENCFF053NYM bed narrowPeak peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025FTE, ENCFF186BBQ, ENCFF322DCQ, ENCFF979XVT 673604 ENCODE Processing Pipeline 91639936a8e0f6700fdab911e7b18d63 https://www.encodeproject.org/files/ENCFF053NYM/@@download/ENCFF053NYM.bed.gz mm10 released low read length, low read depth ENCFF900TUJ bigWig fold change over control ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025FTE, ENCFF979XVT 312822863 ENCODE Processing Pipeline d73197360603463602439bfb832b4d00 https://www.encodeproject.org/files/ENCFF900TUJ/@@download/ENCFF900TUJ.bigWig mm10 released low read length, low read depth ENCFF517UDH bigWig signal p-value ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025FTE, ENCFF186BBQ, ENCFF322DCQ, ENCFF979XVT 774791021 ENCODE Processing Pipeline fc372d0b2e390c039cf9445cd4bfde26 https://www.encodeproject.org/files/ENCFF517UDH/@@download/ENCFF517UDH.bigWig mm10 released low read length, low read depth ENCFF271STQ bigWig fold change over control ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF186BBQ, ENCFF322DCQ 400216604 ENCODE Processing Pipeline 9fea68461fae581795a372365d23c31e https://www.encodeproject.org/files/ENCFF271STQ/@@download/ENCFF271STQ.bigWig mm10 released low read length, low read depth ENCFF497OEJ bigWig signal p-value ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF186BBQ, ENCFF322DCQ 437114564 ENCODE Processing Pipeline 9a58b0cd68b7b0fe3a2e682f1a717b3a https://www.encodeproject.org/files/ENCFF497OEJ/@@download/ENCFF497OEJ.bigWig mm10 released low read length, low read depth ENCFF697SJD bigWig signal p-value ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025FTE, ENCFF979XVT 335537770 ENCODE Processing Pipeline 4e08c4628092650825db4456e6f79dbd https://www.encodeproject.org/files/ENCFF697SJD/@@download/ENCFF697SJD.bigWig mm10 released low read length, low read depth ENCFF151NZB bed narrowPeak replicated peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF053NYM, ENCFF107BBT, ENCFF564AMM 748005 ENCODE Processing Pipeline 1300c858d17f6d93e452893a5ae4a970 https://www.encodeproject.org/files/ENCFF151NZB/@@download/ENCFF151NZB.bed.gz mm10 released low read length, low read depth ENCFF104GKL bigWig fold change over control ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025FTE, ENCFF186BBQ, ENCFF322DCQ, ENCFF979XVT 743445759 ENCODE Processing Pipeline 31d45bf8cb9ab1c166aa17d16d16e465 https://www.encodeproject.org/files/ENCFF104GKL/@@download/ENCFF104GKL.bigWig mm10 released low read length, low read depth ENCFF796IWR bigBed narrowPeak replicated peaks ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF151NZB 1737289 ENCODE Processing Pipeline 8076d8168f90fcfe3af11544246e1055 https://www.encodeproject.org/files/ENCFF796IWR/@@download/ENCFF796IWR.bigBed mm10 released low read length, low read depth ENCFF001ZRP fastq reads ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 680554735 Bing Ren, UCSD dc2d5dae885afe0fc32dbba1b3b5865e SRA:SRR3651352 https://www.encodeproject.org/files/ENCFF001ZRP/@@download/ENCFF001ZRP.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length, low read depth ENCFF001ZRQ fastq reads ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1246763169 Bing Ren, UCSD a46ec1538b6fca6c7323a0b510462f27 SRA:SRR3651353 https://www.encodeproject.org/files/ENCFF001ZRQ/@@download/ENCFF001ZRQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUV/ released low read length, low read depth ENCFF289GXU bam alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRQ, ENCFF806TVZ 1011102884 ENCODE Processing Pipeline 0269ce8b99a25bcd7db684568ce73b1c https://www.encodeproject.org/files/ENCFF289GXU/@@download/ENCFF289GXU.bam mm10-minimal archived low read length, low read depth ENCFF139KVM bam alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRP, ENCFF806TVZ 602675115 ENCODE Processing Pipeline 76c22bfbf36d25c18c2246131d7ad754 https://www.encodeproject.org/files/ENCFF139KVM/@@download/ENCFF139KVM.bam mm10-minimal archived low read length, low read depth ENCFF921OYZ bed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF289GXU, ENCFF972ZKQ 824759 ENCODE Processing Pipeline 046fe6e1faa339ba899c6a95285d7622 https://www.encodeproject.org/files/ENCFF921OYZ/@@download/ENCFF921OYZ.bed.gz mm10-minimal archived low read length, low read depth ENCFF269WDY bed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF139KVM, ENCFF972ZKQ 888072 ENCODE Processing Pipeline 6c75f9e04516456817e0a39621f06c0d https://www.encodeproject.org/files/ENCFF269WDY/@@download/ENCFF269WDY.bed.gz mm10-minimal archived low read length, low read depth ENCFF213YMZ bigBed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF921OYZ 2169969 ENCODE Processing Pipeline 8f83cf14803e1ea39c5c6800523749c6 https://www.encodeproject.org/files/ENCFF213YMZ/@@download/ENCFF213YMZ.bigBed mm10-minimal archived low read length, low read depth ENCFF896WTI bed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF139KVM, ENCFF289GXU, ENCFF972ZKQ 662811 ENCODE Processing Pipeline 6b5a7dcfb3ab6bf8a614ce86497751d5 https://www.encodeproject.org/files/ENCFF896WTI/@@download/ENCFF896WTI.bed.gz mm10-minimal archived low read length, low read depth ENCFF922YWO bigBed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF269WDY 2231292 ENCODE Processing Pipeline 135be16370b02469dacc9799be2bfe0d https://www.encodeproject.org/files/ENCFF922YWO/@@download/ENCFF922YWO.bigBed mm10-minimal archived low read length, low read depth ENCFF204MQC bigBed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF896WTI 2123883 ENCODE Processing Pipeline 2f8bde9a20dc5717f9102e90d306bb3e https://www.encodeproject.org/files/ENCFF204MQC/@@download/ENCFF204MQC.bigBed mm10-minimal archived low read length, low read depth ENCFF642FQA bigWig signal p-value ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF289GXU, ENCFF972ZKQ 471232988 ENCODE Processing Pipeline 7fc72ef4d11244cd8acb1574ed86be35 https://www.encodeproject.org/files/ENCFF642FQA/@@download/ENCFF642FQA.bigWig mm10-minimal archived low read length, low read depth ENCFF557ANF bigWig signal p-value ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF139KVM, ENCFF289GXU, ENCFF972ZKQ 505079723 ENCODE Processing Pipeline 5f5614fe9efcabca551964844bbe84a3 https://www.encodeproject.org/files/ENCFF557ANF/@@download/ENCFF557ANF.bigWig mm10-minimal archived low read length, low read depth ENCFF133QNR bigWig signal p-value ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF139KVM, ENCFF972ZKQ 395220793 ENCODE Processing Pipeline 32bda38280284ebec9a8ddd46aa3cad1 https://www.encodeproject.org/files/ENCFF133QNR/@@download/ENCFF133QNR.bigWig mm10-minimal archived low read length, low read depth ENCFF086WTH bigWig fold change over control ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF289GXU, ENCFF972ZKQ 446453714 ENCODE Processing Pipeline fc4d8e0b4d23ec9d88dc952b73b17aed https://www.encodeproject.org/files/ENCFF086WTH/@@download/ENCFF086WTH.bigWig mm10-minimal archived low read length, low read depth ENCFF289SED bigWig fold change over control ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF139KVM, ENCFF289GXU, ENCFF972ZKQ 616474229 ENCODE Processing Pipeline db6c8faba38a9b139fc1cb44357c3bb4 https://www.encodeproject.org/files/ENCFF289SED/@@download/ENCFF289SED.bigWig mm10-minimal archived low read length, low read depth ENCFF080VOT bed narrowPeak replicated peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF269WDY, ENCFF896WTI, ENCFF921OYZ 616662 ENCODE Processing Pipeline 2db9472e0b2d52d91061a2c4b86e9862 https://www.encodeproject.org/files/ENCFF080VOT/@@download/ENCFF080VOT.bed.gz mm10-minimal archived low read length, low read depth ENCFF261GSE bigWig fold change over control ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF139KVM, ENCFF972ZKQ 306425892 ENCODE Processing Pipeline b3938c072a5611bbe70ac70d06ca97e3 https://www.encodeproject.org/files/ENCFF261GSE/@@download/ENCFF261GSE.bigWig mm10-minimal archived low read length, low read depth ENCFF253PUS bigBed narrowPeak replicated peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080VOT 1655742 ENCODE Processing Pipeline 2eab4e467bc96ec078ea124399105b0c https://www.encodeproject.org/files/ENCFF253PUS/@@download/ENCFF253PUS.bigBed mm10-minimal archived low read length, low read depth ENCFF912VRL bam unfiltered alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRP, ENCFF018NEO 880019654 ENCODE Processing Pipeline 385ab0e91bc97b0c1d1da07dfb68e246 https://www.encodeproject.org/files/ENCFF912VRL/@@download/ENCFF912VRL.bam mm10 released low read length, low read depth ENCFF182UHB bam alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRP, ENCFF018NEO 602547166 ENCODE Processing Pipeline 1b988aceefaa99899f6e1c232aca7cca https://www.encodeproject.org/files/ENCFF182UHB/@@download/ENCFF182UHB.bam mm10 released low read length, low read depth ENCFF507OJW bam unfiltered alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRQ, ENCFF018NEO 1606233052 ENCODE Processing Pipeline 7c6d104068b656ed3a6e67756812d560 https://www.encodeproject.org/files/ENCFF507OJW/@@download/ENCFF507OJW.bam mm10 released low read length, low read depth ENCFF420SSZ bam alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRQ, ENCFF018NEO 1010844615 ENCODE Processing Pipeline 3cb5a973ce39fbdc792d52c2126702ca https://www.encodeproject.org/files/ENCFF420SSZ/@@download/ENCFF420SSZ.bam mm10 released low read length, low read depth ENCFF004ZKP bed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF182UHB, ENCFF437LOC, ENCFF468BIZ 888351 ENCODE Processing Pipeline fd9a2e19a4e209c00182b370baa3876b https://www.encodeproject.org/files/ENCFF004ZKP/@@download/ENCFF004ZKP.bed.gz mm10 released low read length, low read depth ENCFF435PKC bed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF420SSZ, ENCFF437LOC, ENCFF468BIZ 822738 ENCODE Processing Pipeline 951513959aedb4d52619fb0d9be2f639 https://www.encodeproject.org/files/ENCFF435PKC/@@download/ENCFF435PKC.bed.gz mm10 released low read length, low read depth ENCFF454NAE bed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182UHB, ENCFF420SSZ, ENCFF437LOC, ENCFF468BIZ 662527 ENCODE Processing Pipeline 6ce2b1167880ec149df981b426f82f1a https://www.encodeproject.org/files/ENCFF454NAE/@@download/ENCFF454NAE.bed.gz mm10 released low read length, low read depth ENCFF778NBN bigBed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF435PKC 2166397 ENCODE Processing Pipeline f4f92208cfe30621301cb90345916b2e https://www.encodeproject.org/files/ENCFF778NBN/@@download/ENCFF778NBN.bigBed mm10 released low read length, low read depth ENCFF762GGS bigBed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF004ZKP 2232943 ENCODE Processing Pipeline 2cfeaff0ceed362d7d53fc5f6c14dc14 https://www.encodeproject.org/files/ENCFF762GGS/@@download/ENCFF762GGS.bigBed mm10 released low read length, low read depth ENCFF081VJP bigBed narrowPeak peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF454NAE 2120725 ENCODE Processing Pipeline 4c1325a7f7922f7958463ca2de7c35dd https://www.encodeproject.org/files/ENCFF081VJP/@@download/ENCFF081VJP.bigBed mm10 released low read length, low read depth ENCFF869TFM bigWig signal p-value ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF420SSZ, ENCFF437LOC, ENCFF468BIZ 419961586 ENCODE Processing Pipeline 7ebf35f0f4ffbf320ed4fb3bf56d0cfc https://www.encodeproject.org/files/ENCFF869TFM/@@download/ENCFF869TFM.bigWig mm10 released low read length, low read depth ENCFF777CAZ bigWig signal p-value ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF182UHB, ENCFF437LOC, ENCFF468BIZ 334433941 ENCODE Processing Pipeline 5b6c77d7f12e027a39054e08440427ad https://www.encodeproject.org/files/ENCFF777CAZ/@@download/ENCFF777CAZ.bigWig mm10 released low read length, low read depth ENCFF649OYV bigWig signal p-value ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182UHB, ENCFF420SSZ, ENCFF437LOC, ENCFF468BIZ 504917208 ENCODE Processing Pipeline 6f35786da462211dd85ddc0f6ed362a0 https://www.encodeproject.org/files/ENCFF649OYV/@@download/ENCFF649OYV.bigWig mm10 released low read length, low read depth ENCFF270VDB bigWig fold change over control ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF420SSZ, ENCFF437LOC, ENCFF468BIZ 446979034 ENCODE Processing Pipeline e5fbb78ddca70c8da27f4871b03d19e7 https://www.encodeproject.org/files/ENCFF270VDB/@@download/ENCFF270VDB.bigWig mm10 released low read length, low read depth ENCFF847OYS bigWig fold change over control ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF182UHB, ENCFF437LOC, ENCFF468BIZ 305861635 ENCODE Processing Pipeline 137f15a8441e69037499c462f00800b2 https://www.encodeproject.org/files/ENCFF847OYS/@@download/ENCFF847OYS.bigWig mm10 released low read length, low read depth ENCFF230FQZ bigWig fold change over control ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182UHB, ENCFF420SSZ, ENCFF437LOC, ENCFF468BIZ 617266089 ENCODE Processing Pipeline 6121783ec46477105f6e0c2455b02241 https://www.encodeproject.org/files/ENCFF230FQZ/@@download/ENCFF230FQZ.bigWig mm10 released low read length, low read depth ENCFF566DFK bed narrowPeak replicated peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF004ZKP, ENCFF435PKC, ENCFF454NAE 606393 ENCODE Processing Pipeline 958d1ea945c25b4aff739a7a123657cc https://www.encodeproject.org/files/ENCFF566DFK/@@download/ENCFF566DFK.bed.gz mm10 released low read length, low read depth ENCFF653ZYQ bigBed narrowPeak replicated peaks ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF566DFK 1629395 ENCODE Processing Pipeline f0a3e9875f786d802f17cff3953a4521 https://www.encodeproject.org/files/ENCFF653ZYQ/@@download/ENCFF653ZYQ.bigBed mm10 released low read length, low read depth ENCFF001LKA bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LKP 523028282 Bing Ren, UCSD 28c48a669c377a2ed1e47bea1c4c769f https://www.encodeproject.org/files/ENCFF001LKA/@@download/ENCFF001LKA.bam mm9 released low read length, control low read depth insufficient read depth ENCFF001LKB bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LKQ 669812607 Bing Ren, UCSD b56b707888aad50137b5f458d8e59506 https://www.encodeproject.org/files/ENCFF001LKB/@@download/ENCFF001LKB.bam mm9 released low read length, control low read depth insufficient read depth ENCFF001LKC bigBed broadPeak peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAG 472704 Bing Ren, UCSD 479cf06e7267734e186659a504cce366 https://www.encodeproject.org/files/ENCFF001LKC/@@download/ENCFF001LKC.bigBed mm9 released low read length, control low read depth insufficient read depth ENCFF001LKH bigWig signal ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKA, ENCFF001LKB 55099497 Bing Ren, UCSD 6e2abef015d359fe18179505a1c89255 https://www.encodeproject.org/files/ENCFF001LKH/@@download/ENCFF001LKH.bigWig mm9 released low read length, control low read depth insufficient read depth ENCFF001LKP fastq reads ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 770333272 Bing Ren, UCSD a4866a732881075af92fe32429c7da6f https://www.encodeproject.org/files/ENCFF001LKP/@@download/ENCFF001LKP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length, control low read depth insufficient read depth ENCFF001LKQ fastq reads ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 803225213 Bing Ren, UCSD 8eacc5eda2283503d19f23dd3d1e7394 https://www.encodeproject.org/files/ENCFF001LKQ/@@download/ENCFF001LKQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length, control low read depth insufficient read depth ENCFF001YAG bed broadPeak peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LKA, ENCFF001LKB 373271 Bing Ren, UCSD be314646d6ff9ca30ae45a666a1ea7f9 https://www.encodeproject.org/files/ENCFF001YAG/@@download/ENCFF001YAG.bed.gz mm9 released low read length, control low read depth insufficient read depth ENCFF270BOY bam unfiltered alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKP, ENCFF018NEO 845018827 ENCODE Processing Pipeline 49befcf6845db99e758082992c70ac6e https://www.encodeproject.org/files/ENCFF270BOY/@@download/ENCFF270BOY.bam mm10 released low read length, control low read depth insufficient read depth ENCFF124FHK bam unfiltered alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKQ, ENCFF018NEO 839540701 ENCODE Processing Pipeline ea188f8516b50a7eb0c0b0adea2bc723 https://www.encodeproject.org/files/ENCFF124FHK/@@download/ENCFF124FHK.bam mm10 released low read length, control low read depth insufficient read depth ENCFF333YHD bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKP, ENCFF018NEO 451660793 ENCODE Processing Pipeline 46ebd0c9194175f50b671618fbe62bce https://www.encodeproject.org/files/ENCFF333YHD/@@download/ENCFF333YHD.bam mm10 released low read length, control low read depth insufficient read depth ENCFF059ZFK bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKQ, ENCFF018NEO 370145426 ENCODE Processing Pipeline 17653b7ab6ec7f44dce53339652d0a73 https://www.encodeproject.org/files/ENCFF059ZFK/@@download/ENCFF059ZFK.bam mm10 released low read length, control low read depth insufficient read depth ENCFF245HNT bigWig signal p-value ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF059ZFK, ENCFF262EEH, ENCFF465PJQ 271963387 ENCODE Processing Pipeline d434d6f254d43adf7eabb714033ad15c https://www.encodeproject.org/files/ENCFF245HNT/@@download/ENCFF245HNT.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF765TKX bed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 5146143 ENCODE Processing Pipeline fdc744feb7d2c5889dd0c0ffd32262ec https://www.encodeproject.org/files/ENCFF765TKX/@@download/ENCFF765TKX.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF892JTT bigWig signal p-value ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF059ZFK, ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 371328286 ENCODE Processing Pipeline 624ba241d569d9eaa0b9ecb7d56b0a97 https://www.encodeproject.org/files/ENCFF892JTT/@@download/ENCFF892JTT.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF791QTJ bigWig fold change over control ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF059ZFK, ENCFF262EEH, ENCFF465PJQ 181415745 ENCODE Processing Pipeline 25afdec34a7fd9d4c0a48415464b23df https://www.encodeproject.org/files/ENCFF791QTJ/@@download/ENCFF791QTJ.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF860XCU bigBed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF851FMZ 12807289 ENCODE Processing Pipeline c7937f595cc5f248f72218448712f8e3 https://www.encodeproject.org/files/ENCFF860XCU/@@download/ENCFF860XCU.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF851FMZ bed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF059ZFK, ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 6004802 ENCODE Processing Pipeline 6674664cb026ee8ed74f49606493bdaf https://www.encodeproject.org/files/ENCFF851FMZ/@@download/ENCFF851FMZ.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF318IYB bed narrowPeak conservative idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF578UCL, ENCFF765TKX, ENCFF851FMZ 558933 ENCODE Processing Pipeline 60cbe399c6f81339f7a5d5f8fb5bdb75 https://www.encodeproject.org/files/ENCFF318IYB/@@download/ENCFF318IYB.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF383PSV bed narrowPeak optimal idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF578UCL, ENCFF765TKX, ENCFF851FMZ 603676 ENCODE Processing Pipeline f1fc071be9a60f59977f01dc87253610 https://www.encodeproject.org/files/ENCFF383PSV/@@download/ENCFF383PSV.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF852EDW bigWig fold change over control ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF059ZFK, ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 337119764 ENCODE Processing Pipeline 62b3f1723493a1f15c94bae4e68b91d0 https://www.encodeproject.org/files/ENCFF852EDW/@@download/ENCFF852EDW.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF233JUO bigWig signal p-value ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 283937982 ENCODE Processing Pipeline 5958c6b5daf3b9688abd5aeb0de5ab6b https://www.encodeproject.org/files/ENCFF233JUO/@@download/ENCFF233JUO.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF722DON bigWig fold change over control ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF262EEH, ENCFF333YHD, ENCFF465PJQ 225691296 ENCODE Processing Pipeline 8b0e82099f6f4a55237b62a01a65c65b https://www.encodeproject.org/files/ENCFF722DON/@@download/ENCFF722DON.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF950IOK bigBed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF765TKX 10618048 ENCODE Processing Pipeline ed61647e6febc63bb613c97832fb813c https://www.encodeproject.org/files/ENCFF950IOK/@@download/ENCFF950IOK.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF536GLG bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF318IYB 1048033 ENCODE Processing Pipeline fd28be350ba9e98a06996f38118007cb https://www.encodeproject.org/files/ENCFF536GLG/@@download/ENCFF536GLG.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF578UCL bed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF059ZFK, ENCFF262EEH, ENCFF465PJQ 4632890 ENCODE Processing Pipeline 0342f08583ab209537126f026a8f1210 https://www.encodeproject.org/files/ENCFF578UCL/@@download/ENCFF578UCL.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF788YWH bigBed narrowPeak peaks and background as input for IDR ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF578UCL 10618794 ENCODE Processing Pipeline d1147ff5f528e49ce47379ab4652ebb7 https://www.encodeproject.org/files/ENCFF788YWH/@@download/ENCFF788YWH.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF675TZC bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF383PSV 1115152 ENCODE Processing Pipeline 1ae540e668158ae7c5b6696a8757981b https://www.encodeproject.org/files/ENCFF675TZC/@@download/ENCFF675TZC.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF002BGL fastq reads ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1639456149 Bing Ren, UCSD f27891150cc1600cd7ce33346383cfef SRA:SRR3652240 https://www.encodeproject.org/files/ENCFF002BGL/@@download/ENCFF002BGL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVD/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002BGX fastq reads ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1645385853 Bing Ren, UCSD eb1dbd083781824c83f8310de8222272 SRA:SRR3652241 https://www.encodeproject.org/files/ENCFF002BGX/@@download/ENCFF002BGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUR/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF693GFZ bam alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGL, ENCFF806TVZ 1126863815 ENCODE Processing Pipeline 930f5022f60c8689ee1a4d3e2a4fcccc https://www.encodeproject.org/files/ENCFF693GFZ/@@download/ENCFF693GFZ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF907RBD bam alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGX, ENCFF806TVZ 1004882736 ENCODE Processing Pipeline 6d24c741b5f675f4ea6b0f02b394b715 https://www.encodeproject.org/files/ENCFF907RBD/@@download/ENCFF907RBD.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF457RON bed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF907RBD 736426 ENCODE Processing Pipeline 1e90e44b345e797c56a86bb791e0c8d0 https://www.encodeproject.org/files/ENCFF457RON/@@download/ENCFF457RON.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF297PVF bigBed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF457RON 2315738 ENCODE Processing Pipeline a241b79fd64548e35bd16578348abc0a https://www.encodeproject.org/files/ENCFF297PVF/@@download/ENCFF297PVF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF322XWA bed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF657TOI, ENCFF693GFZ, ENCFF907RBD 605473 ENCODE Processing Pipeline 50ca38c5a43d4b78590dece561e526ff https://www.encodeproject.org/files/ENCFF322XWA/@@download/ENCFF322XWA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF925JWD bigBed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF208WNL 2313966 ENCODE Processing Pipeline 6f5288d41a9cdfad8576f12d5ed78d02 https://www.encodeproject.org/files/ENCFF925JWD/@@download/ENCFF925JWD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF764RSF bigBed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF322XWA 1950931 ENCODE Processing Pipeline 4553bd31681ac90b8498304b2712d1d0 https://www.encodeproject.org/files/ENCFF764RSF/@@download/ENCFF764RSF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF208WNL bed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF693GFZ 727076 ENCODE Processing Pipeline 7305605fb71e3388f257201add7b312d https://www.encodeproject.org/files/ENCFF208WNL/@@download/ENCFF208WNL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF668ZDL bigWig signal p-value ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF907RBD 423048236 ENCODE Processing Pipeline 204ecf7c168d9f5ba8b0d7598322baa8 https://www.encodeproject.org/files/ENCFF668ZDL/@@download/ENCFF668ZDL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF208CSV bigWig signal p-value ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF693GFZ 341893488 ENCODE Processing Pipeline 2503e3dc11d2088d9e777c47cfe67887 https://www.encodeproject.org/files/ENCFF208CSV/@@download/ENCFF208CSV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF267HSY bigWig signal p-value ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF657TOI, ENCFF693GFZ, ENCFF907RBD 477666546 ENCODE Processing Pipeline 7c7fe97e10983a1a852413dbce177d2b https://www.encodeproject.org/files/ENCFF267HSY/@@download/ENCFF267HSY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF941REQ bigWig fold change over control ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF907RBD 358971812 ENCODE Processing Pipeline ff00752bc54912bfb47a8540c858b14e https://www.encodeproject.org/files/ENCFF941REQ/@@download/ENCFF941REQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF648FTJ bigWig fold change over control ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF693GFZ 403658997 ENCODE Processing Pipeline 52694f63b4240edf4e744162543c1cfe https://www.encodeproject.org/files/ENCFF648FTJ/@@download/ENCFF648FTJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF181AMZ bigWig fold change over control ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF657TOI, ENCFF693GFZ, ENCFF907RBD 622177084 ENCODE Processing Pipeline c446532999b15c3cbab0c7fdf83a11f8 https://www.encodeproject.org/files/ENCFF181AMZ/@@download/ENCFF181AMZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF167IFN bed narrowPeak replicated peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF208WNL, ENCFF322XWA, ENCFF457RON 776358 ENCODE Processing Pipeline 95fd2d22fb53f5d91a517d42c3d44615 https://www.encodeproject.org/files/ENCFF167IFN/@@download/ENCFF167IFN.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF986NHX bigBed narrowPeak replicated peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167IFN 1860146 ENCODE Processing Pipeline f12f9a0d39d51c6aee8ad7318d8aa700 https://www.encodeproject.org/files/ENCFF986NHX/@@download/ENCFF986NHX.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF583PUX bam unfiltered alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGX, ENCFF018NEO 1505603492 ENCODE Processing Pipeline d15aed48ef74dcd34ce7efb3b6522805 https://www.encodeproject.org/files/ENCFF583PUX/@@download/ENCFF583PUX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF102AUU bam unfiltered alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGL, ENCFF018NEO 1539219352 ENCODE Processing Pipeline 3f78d191edf45e7a3b5411e1a8c6c753 https://www.encodeproject.org/files/ENCFF102AUU/@@download/ENCFF102AUU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF047LRB bam alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGX, ENCFF018NEO 789613296 ENCODE Processing Pipeline b139269414cecc6223f6f3e7eb5d8740 https://www.encodeproject.org/files/ENCFF047LRB/@@download/ENCFF047LRB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF283HFS bam alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGL, ENCFF018NEO 882665158 ENCODE Processing Pipeline 40ee832da057fb954aca5bdba55b5f27 https://www.encodeproject.org/files/ENCFF283HFS/@@download/ENCFF283HFS.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF305ZOR bed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF047LRB, ENCFF130PCO, ENCFF735XMC 745825 ENCODE Processing Pipeline 1871695830261659a64e7f114124649b https://www.encodeproject.org/files/ENCFF305ZOR/@@download/ENCFF305ZOR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF887PGO bed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF283HFS, ENCFF735XMC 721451 ENCODE Processing Pipeline f0c06e3fc2f54639da72f6614e8e5e60 https://www.encodeproject.org/files/ENCFF887PGO/@@download/ENCFF887PGO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF746DCK bed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047LRB, ENCFF130PCO, ENCFF283HFS, ENCFF735XMC 627804 ENCODE Processing Pipeline 977becea05463fedc02679a8116f7786 https://www.encodeproject.org/files/ENCFF746DCK/@@download/ENCFF746DCK.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF522JJH bigBed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF305ZOR 2340646 ENCODE Processing Pipeline f13cb47904f54f6b07b0e565ebc42939 https://www.encodeproject.org/files/ENCFF522JJH/@@download/ENCFF522JJH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF659ZZB bigBed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF887PGO 2284083 ENCODE Processing Pipeline 22dfa226cf9edcef9c97b85f015ccdf0 https://www.encodeproject.org/files/ENCFF659ZZB/@@download/ENCFF659ZZB.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF840GYE bigBed narrowPeak peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF746DCK 2011243 ENCODE Processing Pipeline bf89d678c2cc89990ce6b14c53328b4a https://www.encodeproject.org/files/ENCFF840GYE/@@download/ENCFF840GYE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF797VNT bigWig signal p-value ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF047LRB, ENCFF130PCO, ENCFF735XMC 353585505 ENCODE Processing Pipeline 5a44a1470130eac47241b1b31cd05302 https://www.encodeproject.org/files/ENCFF797VNT/@@download/ENCFF797VNT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF137ELH bigWig signal p-value ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF283HFS, ENCFF735XMC 392898009 ENCODE Processing Pipeline 66e1e04d2dd69dd4dc8457272b29b6b8 https://www.encodeproject.org/files/ENCFF137ELH/@@download/ENCFF137ELH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF556KWS bigWig signal p-value ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047LRB, ENCFF130PCO, ENCFF283HFS, ENCFF735XMC 480373136 ENCODE Processing Pipeline 09a07789007227350cb0a06850f287bc https://www.encodeproject.org/files/ENCFF556KWS/@@download/ENCFF556KWS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF424MUR bigWig fold change over control ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF047LRB, ENCFF130PCO, ENCFF735XMC 356847457 ENCODE Processing Pipeline d308766ccd892470ddfe783764e4a9c4 https://www.encodeproject.org/files/ENCFF424MUR/@@download/ENCFF424MUR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF633XUM bigWig fold change over control ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF283HFS, ENCFF735XMC 392477487 ENCODE Processing Pipeline 07a6fecad84d8d0bb43fdd06aaa6cd58 https://www.encodeproject.org/files/ENCFF633XUM/@@download/ENCFF633XUM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF338BLF bigWig fold change over control ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047LRB, ENCFF130PCO, ENCFF283HFS, ENCFF735XMC 614459947 ENCODE Processing Pipeline 536eec325ae02a6ceffa9cf6fdcab8ea https://www.encodeproject.org/files/ENCFF338BLF/@@download/ENCFF338BLF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF105KTG bed narrowPeak replicated peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF305ZOR, ENCFF746DCK, ENCFF887PGO 776593 ENCODE Processing Pipeline 3d50863930942af6b5d2191ba22f5da7 https://www.encodeproject.org/files/ENCFF105KTG/@@download/ENCFF105KTG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF640KAM bigBed narrowPeak replicated peaks ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF105KTG 1849528 ENCODE Processing Pipeline e6f27aaf8958a338d04555f612870060 https://www.encodeproject.org/files/ENCFF640KAM/@@download/ENCFF640KAM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002AQV fastq reads ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1737032247 Bing Ren, UCSD 1cc26345b6aef787f3cf5963a6bd63da SRA:SRR3653229 https://www.encodeproject.org/files/ENCFF002AQV/@@download/ENCFF002AQV.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF002AQZ fastq reads ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1872897513 Bing Ren, UCSD 1836eaeee5149ebb0650b1187faec520 SRA:SRR3653230 https://www.encodeproject.org/files/ENCFF002AQZ/@@download/ENCFF002AQZ.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF981GHP bam unfiltered alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQV, ENCFF806TVZ 1919165405 ENCODE Processing Pipeline c0e5994ae93232f877d3f142f8874e5e https://www.encodeproject.org/files/ENCFF981GHP/@@download/ENCFF981GHP.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF605WGY bam unfiltered alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQZ, ENCFF806TVZ 2135626081 ENCODE Processing Pipeline aae05257c771ce6142899c251c7344b4 https://www.encodeproject.org/files/ENCFF605WGY/@@download/ENCFF605WGY.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF238GCZ bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQZ, ENCFF806TVZ 1507358846 ENCODE Processing Pipeline 50ba9a36e1732d762477151fac29997d https://www.encodeproject.org/files/ENCFF238GCZ/@@download/ENCFF238GCZ.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF967HVB bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQV, ENCFF806TVZ 1386489583 ENCODE Processing Pipeline abead427cd24fe5433d831f682a6041c https://www.encodeproject.org/files/ENCFF967HVB/@@download/ENCFF967HVB.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF780UIU bam unfiltered alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQZ, ENCFF018NEO 2138287555 ENCODE Processing Pipeline b5daff70f8f3a6552077bae417bac6aa https://www.encodeproject.org/files/ENCFF780UIU/@@download/ENCFF780UIU.bam mm10 released insufficient read depth for broad peaks control ENCFF769EYB bam unfiltered alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQV, ENCFF018NEO 1920981934 ENCODE Processing Pipeline fb659df7cac64d2ed17d20495061db31 https://www.encodeproject.org/files/ENCFF769EYB/@@download/ENCFF769EYB.bam mm10 released insufficient read depth for broad peaks control ENCFF331CEU bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQZ, ENCFF018NEO 1506915431 ENCODE Processing Pipeline dc616e2da38bfeb6d17c535f31bdd6a7 https://www.encodeproject.org/files/ENCFF331CEU/@@download/ENCFF331CEU.bam mm10 released insufficient read depth for broad peaks control ENCFF508LNS bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQV, ENCFF018NEO 1386134453 ENCODE Processing Pipeline daa1a453a8e7dbee43841475e9392231 https://www.encodeproject.org/files/ENCFF508LNS/@@download/ENCFF508LNS.bam mm10 released insufficient read depth for broad peaks control ENCFF905GQV bam unfiltered alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQZ, ENCFF018NEO 1740565874 ENCODE Processing Pipeline 3ebb44204a3324322434a8218232c355 https://www.encodeproject.org/files/ENCFF905GQV/@@download/ENCFF905GQV.bam mm10 released insufficient read depth for broad peaks control ENCFF217DJK bam unfiltered alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQV, ENCFF018NEO 1574254110 ENCODE Processing Pipeline a08ad5a68c5afed5ea3f606931f2bac3 https://www.encodeproject.org/files/ENCFF217DJK/@@download/ENCFF217DJK.bam mm10 released insufficient read depth for broad peaks control ENCFF507BQX bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQZ, ENCFF018NEO 1151706873 ENCODE Processing Pipeline e48c3bca614481345c07a638bab5fc52 https://www.encodeproject.org/files/ENCFF507BQX/@@download/ENCFF507BQX.bam mm10 released insufficient read depth for broad peaks control ENCFF858PPY bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQV, ENCFF018NEO 1062179944 ENCODE Processing Pipeline 2b40158431c1691da830477b85cabb3e https://www.encodeproject.org/files/ENCFF858PPY/@@download/ENCFF858PPY.bam mm10 released insufficient read depth for broad peaks control ENCFF001ZSS fastq reads ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1232460575 Bing Ren, UCSD 54987ab015a4cc226393dc0036c5fe94 SRA:SRR3651780 https://www.encodeproject.org/files/ENCFF001ZSS/@@download/ENCFF001ZSS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVA/ released low read length ENCFF001ZSV fastq reads ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1130512679 Bing Ren, UCSD f8d7ad5195f7436a2a54d9479fcd03d7 SRA:SRR3651781 https://www.encodeproject.org/files/ENCFF001ZSV/@@download/ENCFF001ZSV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUZ/ released low read length ENCFF296NJA bam alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZSS, ENCFF806TVZ 1050777270 ENCODE Processing Pipeline e5e4786eef535c116fb8679a51acc00c https://www.encodeproject.org/files/ENCFF296NJA/@@download/ENCFF296NJA.bam mm10-minimal archived low read length ENCFF618FJJ bam alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZSV, ENCFF806TVZ 977653453 ENCODE Processing Pipeline d0db012e178fdc1e80901e05012642d8 https://www.encodeproject.org/files/ENCFF618FJJ/@@download/ENCFF618FJJ.bam mm10-minimal archived low read length ENCFF323RAQ bed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF296NJA, ENCFF976TWF 1028239 ENCODE Processing Pipeline cddd0b491ed02fe75a44f811f59c28c3 https://www.encodeproject.org/files/ENCFF323RAQ/@@download/ENCFF323RAQ.bed.gz mm10-minimal archived low read length ENCFF897NYR bed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF618FJJ, ENCFF976TWF 1131866 ENCODE Processing Pipeline a61a3618dbaffb73f80ee94c9306f9a2 https://www.encodeproject.org/files/ENCFF897NYR/@@download/ENCFF897NYR.bed.gz mm10-minimal archived low read length ENCFF691WUH bed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF296NJA, ENCFF618FJJ, ENCFF976TWF 640442 ENCODE Processing Pipeline 1255ba1935242b765462106be31e8037 https://www.encodeproject.org/files/ENCFF691WUH/@@download/ENCFF691WUH.bed.gz mm10-minimal archived low read length ENCFF851QBZ 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read length ENCFF727DWY bigWig signal p-value ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF296NJA, ENCFF976TWF 465241500 ENCODE Processing Pipeline d66a28b67b43b438b709c6ecf1afa062 https://www.encodeproject.org/files/ENCFF727DWY/@@download/ENCFF727DWY.bigWig mm10-minimal archived low read length ENCFF173DGZ bigWig signal p-value ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF618FJJ, ENCFF976TWF 418434692 ENCODE Processing Pipeline 1352f83f53c84fb79da08986a1a17f14 https://www.encodeproject.org/files/ENCFF173DGZ/@@download/ENCFF173DGZ.bigWig mm10-minimal archived low read length ENCFF979KWL bigWig signal p-value ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF296NJA, ENCFF618FJJ, ENCFF976TWF 515518240 ENCODE Processing Pipeline c83be80afcc2fdc9ff12b345c88abb03 https://www.encodeproject.org/files/ENCFF979KWL/@@download/ENCFF979KWL.bigWig mm10-minimal archived low read length ENCFF569FDP bigWig fold change over control ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF296NJA, ENCFF976TWF 452604484 ENCODE Processing Pipeline 934b49bafc566d8809edab74f5c71ac0 https://www.encodeproject.org/files/ENCFF569FDP/@@download/ENCFF569FDP.bigWig mm10-minimal archived low read length ENCFF137GXK bigWig fold change over control ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF618FJJ, ENCFF976TWF 427461238 ENCODE Processing Pipeline 55028f86a7cdce617dccf87889d5d95d https://www.encodeproject.org/files/ENCFF137GXK/@@download/ENCFF137GXK.bigWig mm10-minimal archived low read length ENCFF176IQR bigWig fold change over control ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF296NJA, ENCFF618FJJ, ENCFF976TWF 710045640 ENCODE Processing Pipeline 25908955c44de83d2afd48db27cb9f52 https://www.encodeproject.org/files/ENCFF176IQR/@@download/ENCFF176IQR.bigWig mm10-minimal archived low read length ENCFF971HJM bigBed narrowPeak replicated peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF207XGS 1783741 ENCODE Processing Pipeline 39be0d04303375cf3828fb431bad778a https://www.encodeproject.org/files/ENCFF971HJM/@@download/ENCFF971HJM.bigBed mm10-minimal archived low read length ENCFF207XGS bed narrowPeak replicated peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF323RAQ, ENCFF691WUH, ENCFF897NYR 675065 ENCODE Processing Pipeline 86838b4c99d738b1efcbc15bc2caa415 https://www.encodeproject.org/files/ENCFF207XGS/@@download/ENCFF207XGS.bed.gz mm10-minimal archived low read length ENCFF960CZV bam unfiltered alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSS, ENCFF018NEO 1590129179 ENCODE Processing Pipeline 7ded051054674ac727fe5c4960ed99c9 https://www.encodeproject.org/files/ENCFF960CZV/@@download/ENCFF960CZV.bam mm10 released low read length ENCFF263JRB bam unfiltered alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSV, ENCFF018NEO 1451330733 ENCODE Processing Pipeline 9d7af140bd036fc7c453f54ecd5307c7 https://www.encodeproject.org/files/ENCFF263JRB/@@download/ENCFF263JRB.bam mm10 released low read length ENCFF224RCU bam alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSV, ENCFF018NEO 977434247 ENCODE Processing Pipeline 46b3bb16004737932f8fb908aa89f9c5 https://www.encodeproject.org/files/ENCFF224RCU/@@download/ENCFF224RCU.bam mm10 released low read length ENCFF158YWA bam alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSS, ENCFF018NEO 1050526452 ENCODE Processing Pipeline 1e4a2a071ec3725429564d3f716ca755 https://www.encodeproject.org/files/ENCFF158YWA/@@download/ENCFF158YWA.bam mm10 released low read length ENCFF783BBX bigBed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF429YWZ 2087485 ENCODE Processing Pipeline 787f107f6e1ca68d571bc80821c4b67e https://www.encodeproject.org/files/ENCFF783BBX/@@download/ENCFF783BBX.bigBed mm10 released low read length ENCFF070VCX bed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF158YWA, ENCFF563TGK, ENCFF903TSE 785859 ENCODE Processing Pipeline c1bffbb5e6af7fe6189ea14b739f7160 https://www.encodeproject.org/files/ENCFF070VCX/@@download/ENCFF070VCX.bed.gz mm10 released low read length ENCFF429YWZ bed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158YWA, ENCFF224RCU, ENCFF563TGK, ENCFF903TSE 640635 ENCODE Processing Pipeline 4e322723c5c3522d421c2bbf7d28605d https://www.encodeproject.org/files/ENCFF429YWZ/@@download/ENCFF429YWZ.bed.gz mm10 released low read length ENCFF740CEL bed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224RCU, ENCFF563TGK, ENCFF903TSE 1115448 ENCODE Processing Pipeline 9037202161d6313ca14151589fdd4759 https://www.encodeproject.org/files/ENCFF740CEL/@@download/ENCFF740CEL.bed.gz mm10 released low read length ENCFF901NZH bigBed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF070VCX 2071535 ENCODE Processing Pipeline 7853d08da8edeb114115dbee1b4fc12b https://www.encodeproject.org/files/ENCFF901NZH/@@download/ENCFF901NZH.bigBed mm10 released low read length ENCFF408IYK bigBed narrowPeak peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF740CEL 2773691 ENCODE Processing Pipeline 8e3ee8e1653bae7a470f7243b08cadbd https://www.encodeproject.org/files/ENCFF408IYK/@@download/ENCFF408IYK.bigBed mm10 released low read length ENCFF313IKE bigWig signal p-value ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF158YWA, ENCFF563TGK, ENCFF903TSE 415501392 ENCODE Processing Pipeline 48c4666798708fa2aecfcb4c401401f2 https://www.encodeproject.org/files/ENCFF313IKE/@@download/ENCFF313IKE.bigWig mm10 released low read length ENCFF057ZNA bigWig signal p-value ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224RCU, ENCFF563TGK, ENCFF903TSE 358148414 ENCODE Processing Pipeline 38ef8d38010af141f11b87763206cffb https://www.encodeproject.org/files/ENCFF057ZNA/@@download/ENCFF057ZNA.bigWig mm10 released low read length ENCFF841MEG bigWig signal p-value ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158YWA, ENCFF224RCU, ENCFF563TGK, ENCFF903TSE 515477296 ENCODE Processing Pipeline 1091301bb00661765921a777ae7dabf3 https://www.encodeproject.org/files/ENCFF841MEG/@@download/ENCFF841MEG.bigWig mm10 released low read length ENCFF008CDV bigWig fold change over control ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF158YWA, ENCFF563TGK, ENCFF903TSE 460982789 ENCODE Processing Pipeline 77e10251933f98e60667e5b9a1a4ea71 https://www.encodeproject.org/files/ENCFF008CDV/@@download/ENCFF008CDV.bigWig mm10 released low read length ENCFF656GCQ bigWig fold change over control ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224RCU, ENCFF563TGK, ENCFF903TSE 424800283 ENCODE Processing Pipeline 10b5408fa2b9ff1004176a114631d220 https://www.encodeproject.org/files/ENCFF656GCQ/@@download/ENCFF656GCQ.bigWig mm10 released low read length ENCFF851ZPG bigWig fold change over control ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158YWA, ENCFF224RCU, ENCFF563TGK, ENCFF903TSE 709926058 ENCODE Processing Pipeline b1012458f56354dac11cf391cf0b7ccb https://www.encodeproject.org/files/ENCFF851ZPG/@@download/ENCFF851ZPG.bigWig mm10 released low read length ENCFF151ZNU bed narrowPeak replicated peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF070VCX, ENCFF429YWZ, ENCFF740CEL 659185 ENCODE Processing Pipeline ade73fff12dfd1b0c3c799db0833e34f https://www.encodeproject.org/files/ENCFF151ZNU/@@download/ENCFF151ZNU.bed.gz mm10 released low read length ENCFF774FCR bigBed narrowPeak replicated peaks ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF151ZNU 1748081 ENCODE Processing Pipeline eec997a3a523745294eb3bbf2c4d0ac1 https://www.encodeproject.org/files/ENCFF774FCR/@@download/ENCFF774FCR.bigBed mm10 released low read length ENCFF002ARC fastq reads ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1547759877 Bing Ren, UCSD a3850b7c7aeeebda140fe2de9cca1bb3 SRA:SRR3651658 https://www.encodeproject.org/files/ENCFF002ARC/@@download/ENCFF002ARC.fastq.gz Illumina HiSeq 2500 released insufficient read depth for broad peaks control ENCFF002ARH fastq reads ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2064375940 Bing Ren, UCSD fad5c24c991d5635ceedab589e5ca42e SRA:SRR3651657 https://www.encodeproject.org/files/ENCFF002ARH/@@download/ENCFF002ARH.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF003JEV bam unfiltered alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARH, ENCFF806TVZ 2274942630 ENCODE Processing Pipeline f9c01d4dc67c7ad3e3a0c4bd9e6fa132 https://www.encodeproject.org/files/ENCFF003JEV/@@download/ENCFF003JEV.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF383GLQ bam unfiltered alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARC, ENCFF806TVZ 1767554714 ENCODE Processing Pipeline 79c0289542237deee025d7ff43696c7a https://www.encodeproject.org/files/ENCFF383GLQ/@@download/ENCFF383GLQ.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF156ZPL bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARH, ENCFF806TVZ 1641440883 ENCODE Processing Pipeline dc3e1f32e8346026ffaedde81a0400ad https://www.encodeproject.org/files/ENCFF156ZPL/@@download/ENCFF156ZPL.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF989KGL bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARC, ENCFF806TVZ 1217303678 ENCODE Processing Pipeline 4e8d4340681c5c867efc2d4f5bb0b698 https://www.encodeproject.org/files/ENCFF989KGL/@@download/ENCFF989KGL.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF342RVS bam unfiltered alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ARC, ENCFF018NEO 1769721311 ENCODE Processing Pipeline 22b58934bf497e12d407fdeffe86dc28 https://www.encodeproject.org/files/ENCFF342RVS/@@download/ENCFF342RVS.bam mm10 released insufficient read depth for broad peaks control ENCFF876XRR bam unfiltered alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ARH, ENCFF018NEO 2277070177 ENCODE Processing Pipeline caa571a5505a6055fd65198538255d90 https://www.encodeproject.org/files/ENCFF876XRR/@@download/ENCFF876XRR.bam mm10 released insufficient read depth for broad peaks control ENCFF517DFW bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ARC, ENCFF018NEO 1216950146 ENCODE Processing Pipeline fef0e920f685a889dd0b37adaac28f61 https://www.encodeproject.org/files/ENCFF517DFW/@@download/ENCFF517DFW.bam mm10 released insufficient read depth for broad peaks control ENCFF040DTM bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ARH, ENCFF018NEO 1640988539 ENCODE Processing Pipeline 2c2e1850f47e09eeb09efd9dbbdea4c7 https://www.encodeproject.org/files/ENCFF040DTM/@@download/ENCFF040DTM.bam mm10 released insufficient read depth for broad peaks control ENCFF277RAM bam unfiltered alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARH, ENCFF018NEO 1868131841 ENCODE Processing Pipeline 0d158137005d258c109ace9eb63f8489 https://www.encodeproject.org/files/ENCFF277RAM/@@download/ENCFF277RAM.bam mm10 released insufficient read depth for broad peaks control ENCFF161OWF bam unfiltered alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARC, ENCFF018NEO 1442407451 ENCODE Processing Pipeline 5ceabc58776e4be02b464014c22e079e https://www.encodeproject.org/files/ENCFF161OWF/@@download/ENCFF161OWF.bam mm10 released insufficient read depth for broad peaks control ENCFF922FWV bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARH, ENCFF018NEO 1258909760 ENCODE Processing Pipeline ba66f279e6b53fd3034c620f19b03f78 https://www.encodeproject.org/files/ENCFF922FWV/@@download/ENCFF922FWV.bam mm10 released insufficient read depth for broad peaks control ENCFF782YCY bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARC, ENCFF018NEO 931454082 ENCODE Processing Pipeline 02276b380ffb0187d324afdbb8c52328 https://www.encodeproject.org/files/ENCFF782YCY/@@download/ENCFF782YCY.bam mm10 released insufficient read depth for broad peaks control ENCFF336KVB fastq reads ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1326188992 Bing Ren, UCSD 4c5c0649288d9fb839cd6d7f31a4c9a0 SRA:SRR3651505 https://www.encodeproject.org/files/ENCFF336KVB/@@download/ENCFF336KVB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF446GHW fastq reads ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1322676073 Bing Ren, UCSD 4df9427ecdfdc8f9cbb3df3d1e3ef03e SRA:SRR3651504 https://www.encodeproject.org/files/ENCFF446GHW/@@download/ENCFF446GHW.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF830UQW bam alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF446GHW, ENCFF806TVZ 821948722 ENCODE Processing Pipeline 189c79344276c13751a01c774355fa59 https://www.encodeproject.org/files/ENCFF830UQW/@@download/ENCFF830UQW.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF197FFU bam alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF336KVB, ENCFF806TVZ 1014724088 ENCODE Processing Pipeline ab08e405a43dbb49edc02767a5da4b4b https://www.encodeproject.org/files/ENCFF197FFU/@@download/ENCFF197FFU.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF187UBE bed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF830UQW 973256 ENCODE Processing Pipeline 5084a4ed8a4d06869d21f664860f85e2 https://www.encodeproject.org/files/ENCFF187UBE/@@download/ENCFF187UBE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF492ZMZ bed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF197FFU, ENCFF562EMV, ENCFF623BMA, ENCFF830UQW 871008 ENCODE Processing Pipeline cf7d76a0d8f100020be8cc3136e569aa https://www.encodeproject.org/files/ENCFF492ZMZ/@@download/ENCFF492ZMZ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF487KYO bigBed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF492ZMZ 2705992 ENCODE Processing Pipeline 51be9f058bbd07f0f03f57ccffa1a3e4 https://www.encodeproject.org/files/ENCFF487KYO/@@download/ENCFF487KYO.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF500JJX bed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF197FFU, ENCFF562EMV, ENCFF623BMA 930201 ENCODE Processing Pipeline 477efdb06de6a1fbf7cac753902e4342 https://www.encodeproject.org/files/ENCFF500JJX/@@download/ENCFF500JJX.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF932CHP bigBed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF500JJX 2898808 ENCODE Processing Pipeline 3d718e28f1e609f2215f19179c503903 https://www.encodeproject.org/files/ENCFF932CHP/@@download/ENCFF932CHP.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF221JXD bigBed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF187UBE 3032973 ENCODE Processing Pipeline 92a5d22345db7b7644563d472dc1c60e https://www.encodeproject.org/files/ENCFF221JXD/@@download/ENCFF221JXD.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF420NUM bigWig signal p-value ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF830UQW 341749995 ENCODE Processing Pipeline 3a718ab46d6e8b925a6e5afd34dd0900 https://www.encodeproject.org/files/ENCFF420NUM/@@download/ENCFF420NUM.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF746SZB bigWig signal p-value ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF197FFU, ENCFF562EMV, ENCFF623BMA 405060401 ENCODE Processing Pipeline d36e3ea4308e2b53d0bdb09400c1be2c https://www.encodeproject.org/files/ENCFF746SZB/@@download/ENCFF746SZB.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF418XOE bigWig signal p-value ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF197FFU, ENCFF562EMV, ENCFF623BMA, ENCFF830UQW 443770830 ENCODE Processing Pipeline 14af440d30983b62f09fb7983297cded https://www.encodeproject.org/files/ENCFF418XOE/@@download/ENCFF418XOE.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF897HIA bigWig fold change over control ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF197FFU, ENCFF562EMV, ENCFF623BMA 396393251 ENCODE Processing Pipeline 3f0fb67c6cfe9cdcd12204c986f7ac25 https://www.encodeproject.org/files/ENCFF897HIA/@@download/ENCFF897HIA.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF033AHC bigWig fold change over control ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF830UQW 350875780 ENCODE Processing Pipeline 5d859e51e7f28c14ffdb01ef17bbb903 https://www.encodeproject.org/files/ENCFF033AHC/@@download/ENCFF033AHC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF998UFL bed narrowPeak replicated peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF187UBE, ENCFF492ZMZ, ENCFF500JJX 1150543 ENCODE Processing Pipeline 32691e6f4aec1824161d867274e05c38 https://www.encodeproject.org/files/ENCFF998UFL/@@download/ENCFF998UFL.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF795YWV bigWig fold change over control ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF197FFU, ENCFF562EMV, ENCFF623BMA, ENCFF830UQW 601230203 ENCODE Processing Pipeline 51e5e66627d2c93b936ecdc54f381a74 https://www.encodeproject.org/files/ENCFF795YWV/@@download/ENCFF795YWV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF777QNT bigBed narrowPeak replicated peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF998UFL 2576634 ENCODE Processing Pipeline 60134460801d1b6bb6c1c91a862d976a https://www.encodeproject.org/files/ENCFF777QNT/@@download/ENCFF777QNT.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF123QSI bam unfiltered alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF336KVB 1595461237 ENCODE Processing Pipeline 557738a76e181e2ec4b1b0672ef4f098 https://www.encodeproject.org/files/ENCFF123QSI/@@download/ENCFF123QSI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF443GBD bam unfiltered alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF446GHW 1501887086 ENCODE Processing Pipeline 68b6100139a15fdacf350c768a696c3c https://www.encodeproject.org/files/ENCFF443GBD/@@download/ENCFF443GBD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF878DSH bam alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF336KVB 1014600217 ENCODE Processing Pipeline 73a75749a732258d1b49fb11a627d5c9 https://www.encodeproject.org/files/ENCFF878DSH/@@download/ENCFF878DSH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF856EJO bam alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF446GHW 821892484 ENCODE Processing Pipeline 104a562a8b67981bfeda03db879e28c6 https://www.encodeproject.org/files/ENCFF856EJO/@@download/ENCFF856EJO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF438XKL bed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF856EJO, ENCFF903NWQ 754817 ENCODE Processing Pipeline c930702872fab99b39d2045ddc28b126 https://www.encodeproject.org/files/ENCFF438XKL/@@download/ENCFF438XKL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF300OFD bed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF878DSH, ENCFF903NWQ, ENCFF995XOU 922039 ENCODE Processing Pipeline 274c700298093bf8d4872306e4c7aaa0 https://www.encodeproject.org/files/ENCFF300OFD/@@download/ENCFF300OFD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF180GHE bed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF856EJO, ENCFF878DSH, ENCFF903NWQ, ENCFF995XOU 863191 ENCODE Processing Pipeline 6ed8250559c0af24b22b25474ad79f3b https://www.encodeproject.org/files/ENCFF180GHE/@@download/ENCFF180GHE.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF136RLV bigBed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF300OFD 2879815 ENCODE Processing Pipeline e6fa85694214ae19acc256730b64f8ce https://www.encodeproject.org/files/ENCFF136RLV/@@download/ENCFF136RLV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF411POV bigBed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF438XKL 2405985 ENCODE Processing Pipeline b719a14a71ea1a61cafb63819ad1d9cf https://www.encodeproject.org/files/ENCFF411POV/@@download/ENCFF411POV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF144LKX bigBed narrowPeak peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF180GHE 2692076 ENCODE Processing Pipeline ead99b1f59f3590be6197c8e95218756 https://www.encodeproject.org/files/ENCFF144LKX/@@download/ENCFF144LKX.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF993PCU bigWig signal p-value ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF878DSH, ENCFF903NWQ, ENCFF995XOU 403007631 ENCODE Processing Pipeline 03f4dd4300017b9c45ab4ad43908e33c https://www.encodeproject.org/files/ENCFF993PCU/@@download/ENCFF993PCU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF812BMH bigWig signal p-value ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF856EJO, ENCFF903NWQ 204212370 ENCODE Processing Pipeline 846fcb1211ceec5020f27077d561fa2d https://www.encodeproject.org/files/ENCFF812BMH/@@download/ENCFF812BMH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF924ONU bigWig signal p-value ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF856EJO, ENCFF878DSH, ENCFF903NWQ, ENCFF995XOU 445989570 ENCODE Processing Pipeline f560fbfdc684e6ed386560e33ce9e6da https://www.encodeproject.org/files/ENCFF924ONU/@@download/ENCFF924ONU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF477PSP bigWig fold change over control ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF878DSH, ENCFF903NWQ, ENCFF995XOU 399743190 ENCODE Processing Pipeline 77000a07ce4e15f83a138c28fdbeee13 https://www.encodeproject.org/files/ENCFF477PSP/@@download/ENCFF477PSP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF633BQN bigWig fold change over control ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF856EJO, ENCFF903NWQ 285711069 ENCODE Processing Pipeline 900f3083880c843d7a95577544c25780 https://www.encodeproject.org/files/ENCFF633BQN/@@download/ENCFF633BQN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF087LVF bigWig fold change over control ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF856EJO, ENCFF878DSH, ENCFF903NWQ, ENCFF995XOU 604101328 ENCODE Processing Pipeline 1277713a0ac51965766d5b8e3c1e46a7 https://www.encodeproject.org/files/ENCFF087LVF/@@download/ENCFF087LVF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF063GKX bed narrowPeak replicated peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF180GHE, ENCFF300OFD, ENCFF438XKL 1114558 ENCODE Processing Pipeline c9522933b05c3db49d7e06e7d009f30b https://www.encodeproject.org/files/ENCFF063GKX/@@download/ENCFF063GKX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF511QSW bigBed narrowPeak replicated peaks ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF063GKX 2501704 ENCODE Processing Pipeline 1eab7c8d9a63a8df80d5f9d03207ff60 https://www.encodeproject.org/files/ENCFF511QSW/@@download/ENCFF511QSW.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF001KJB bigBed broadPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XXM 2148731 Bing Ren, UCSD 16dd03298aa19ea4c832459c239edad6 https://www.encodeproject.org/files/ENCFF001KJB/@@download/ENCFF001KJB.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KJC bam alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KJK 1466702474 Bing Ren, UCSD 22c0e0e827f835b2de7237e9ddde2cf1 https://www.encodeproject.org/files/ENCFF001KJC/@@download/ENCFF001KJC.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KJD bam alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KJM 1494854147 Bing Ren, UCSD 3aac4f47e78fa7edd67aaeba3d80391b https://www.encodeproject.org/files/ENCFF001KJD/@@download/ENCFF001KJD.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KJE bigWig signal ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KJC, ENCFF001KJD 74502688 Bing Ren, UCSD 7b8e8958e5cc556305077fc7a7247780 https://www.encodeproject.org/files/ENCFF001KJE/@@download/ENCFF001KJE.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KJK fastq reads ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1441865544 Bing Ren, UCSD 790fee74668454aea30fef44954811a5 https://www.encodeproject.org/files/ENCFF001KJK/@@download/ENCFF001KJK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KKE/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KJM fastq reads ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1473936981 Bing Ren, UCSD 315945883a040d3933dc93153152e0a0 https://www.encodeproject.org/files/ENCFF001KJM/@@download/ENCFF001KJM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KKF/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XXM bed broadPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KJC, ENCFF001KJD 1191772 Bing Ren, UCSD 80725899cdd1eaade72654f63ec8e4c9 https://www.encodeproject.org/files/ENCFF001XXM/@@download/ENCFF001XXM.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF746MBY bam unfiltered alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KJM, ENCFF018NEO 1610129814 ENCODE Processing Pipeline 1f7364345212374d734122292c747c35 https://www.encodeproject.org/files/ENCFF746MBY/@@download/ENCFF746MBY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF658OSS bam unfiltered alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KJK, ENCFF018NEO 1585517855 ENCODE Processing Pipeline a53f6aee5898ba5248fff672a4107e3f https://www.encodeproject.org/files/ENCFF658OSS/@@download/ENCFF658OSS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF598VTL bam alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KJM, ENCFF018NEO 906808439 ENCODE Processing Pipeline 6714ca2a30e4309b0976f636472b9255 https://www.encodeproject.org/files/ENCFF598VTL/@@download/ENCFF598VTL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF339VPQ bam alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KJK, ENCFF018NEO 874743651 ENCODE Processing Pipeline 62dae6deb83934994a9d29920f364f26 https://www.encodeproject.org/files/ENCFF339VPQ/@@download/ENCFF339VPQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF996FJV bed narrowPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF396FNQ, ENCFF598VTL, ENCFF862XUW 1869315 ENCODE Processing Pipeline 5e881303c949d6d33844675591edff3d https://www.encodeproject.org/files/ENCFF996FJV/@@download/ENCFF996FJV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF106CUZ bigBed narrowPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF996FJV 3934936 ENCODE Processing Pipeline ffb3f5fe7178212b72075f155ed16116 https://www.encodeproject.org/files/ENCFF106CUZ/@@download/ENCFF106CUZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF370GKK bed narrowPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF339VPQ, ENCFF396FNQ, ENCFF598VTL, ENCFF862XUW 1194870 ENCODE Processing Pipeline d7b08175bb391ca8a1bdfa3383fe18ba https://www.encodeproject.org/files/ENCFF370GKK/@@download/ENCFF370GKK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF036WVX bigBed narrowPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF370GKK 2557013 ENCODE Processing Pipeline a688c59cfecd642ebc935ea44a417698 https://www.encodeproject.org/files/ENCFF036WVX/@@download/ENCFF036WVX.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF406VUK bed narrowPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF339VPQ, ENCFF396FNQ, ENCFF862XUW 1005686 ENCODE Processing Pipeline d5ef519bd61ebc1b62459cee0135609c https://www.encodeproject.org/files/ENCFF406VUK/@@download/ENCFF406VUK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF226BOK bigBed narrowPeak peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF406VUK 2372022 ENCODE Processing Pipeline 2889a6228abed1c81399ca6e08e3322e https://www.encodeproject.org/files/ENCFF226BOK/@@download/ENCFF226BOK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF862WVS bigWig signal p-value ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF396FNQ, ENCFF598VTL, ENCFF862XUW 378990415 ENCODE Processing Pipeline 7d7a18723696524cd86c13cf777fdd8d https://www.encodeproject.org/files/ENCFF862WVS/@@download/ENCFF862WVS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF026CFF bigWig signal p-value ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF339VPQ, ENCFF396FNQ, ENCFF862XUW 368948167 ENCODE Processing Pipeline f64c32070928400dcdeb7506b29982be https://www.encodeproject.org/files/ENCFF026CFF/@@download/ENCFF026CFF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF813UUR bigWig signal p-value ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF339VPQ, ENCFF396FNQ, ENCFF598VTL, ENCFF862XUW 371941664 ENCODE Processing Pipeline b373b72ec0d65d2133b8fc898d6eaf3a https://www.encodeproject.org/files/ENCFF813UUR/@@download/ENCFF813UUR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF575NTI bigWig fold change over control ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF339VPQ, ENCFF396FNQ, ENCFF862XUW 348333396 ENCODE Processing Pipeline eef3b31e59663893bc1c4066e3571740 https://www.encodeproject.org/files/ENCFF575NTI/@@download/ENCFF575NTI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF466IKY bigWig fold change over control ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF396FNQ, ENCFF598VTL, ENCFF862XUW 348798704 ENCODE Processing Pipeline 41457e67e03647d626af4a84e1274daa https://www.encodeproject.org/files/ENCFF466IKY/@@download/ENCFF466IKY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF175AIB bigWig fold change over control ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF339VPQ, ENCFF396FNQ, ENCFF598VTL, ENCFF862XUW 588524180 ENCODE Processing Pipeline b176f5bc147c4f7c51a0a4818ccf2162 https://www.encodeproject.org/files/ENCFF175AIB/@@download/ENCFF175AIB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF411UCU bed narrowPeak replicated peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF370GKK, ENCFF406VUK, ENCFF996FJV 832841 ENCODE Processing Pipeline 2aedd1af0340318fd1774ba1915e856d https://www.encodeproject.org/files/ENCFF411UCU/@@download/ENCFF411UCU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF357SNI bigBed narrowPeak replicated peaks ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF411UCU 1619808 ENCODE Processing Pipeline 2e6de47b2b1d0ac9b4198bb2c65640d9 https://www.encodeproject.org/files/ENCFF357SNI/@@download/ENCFF357SNI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF002APX fastq reads ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1277190930 Bing Ren, UCSD b12bcd559883a6395fbdc91fd0b6896a SRA:SRR3652649 https://www.encodeproject.org/files/ENCFF002APX/@@download/ENCFF002APX.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF002AQA fastq reads ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1246439122 Bing Ren, UCSD ccd5f7bbf3022a3c6593764a4ed5dc7d SRA:SRR3652650 https://www.encodeproject.org/files/ENCFF002AQA/@@download/ENCFF002AQA.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF639VQI bam unfiltered alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQA, ENCFF806TVZ 1374359511 ENCODE Processing Pipeline 4112be893eda856baa9ecdc4812479b2 https://www.encodeproject.org/files/ENCFF639VQI/@@download/ENCFF639VQI.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF192WRZ bam unfiltered alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APX, ENCFF806TVZ 1432686749 ENCODE Processing Pipeline bc7b0b0774725b63f84c674cf77e4d88 https://www.encodeproject.org/files/ENCFF192WRZ/@@download/ENCFF192WRZ.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF775YLK bam alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQA, ENCFF806TVZ 925369262 ENCODE Processing Pipeline 2e6cffc04ae57c7b095040cd5c807b07 https://www.encodeproject.org/files/ENCFF775YLK/@@download/ENCFF775YLK.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF009SMR bam alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APX, ENCFF806TVZ 1014512295 ENCODE Processing Pipeline 5c95b18092473b904f739e341112d917 https://www.encodeproject.org/files/ENCFF009SMR/@@download/ENCFF009SMR.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF864ZMZ bam unfiltered alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQA, ENCFF018NEO 1376274870 ENCODE Processing Pipeline 16c11a691fbb1feb22b9903e49a45b3f https://www.encodeproject.org/files/ENCFF864ZMZ/@@download/ENCFF864ZMZ.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF297IWD bam unfiltered alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APX, ENCFF018NEO 1176637868 ENCODE Processing Pipeline bb3086004ce37a0aa073bc366572cc21 https://www.encodeproject.org/files/ENCFF297IWD/@@download/ENCFF297IWD.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF911DNW bam alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQA, ENCFF018NEO 925023019 ENCODE Processing Pipeline 1bc2227ade2b66ade9597e1a3eb34332 https://www.encodeproject.org/files/ENCFF911DNW/@@download/ENCFF911DNW.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF831XWF bam alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APX, ENCFF018NEO 776899419 ENCODE Processing Pipeline 6d90dccfd14303c0c4b425fe0433274e https://www.encodeproject.org/files/ENCFF831XWF/@@download/ENCFF831XWF.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF002AQN fastq reads ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1103314853 Bing Ren, UCSD 4d95bc0ada45063d961f3c3e32a86acf SRA:SRR3652233 https://www.encodeproject.org/files/ENCFF002AQN/@@download/ENCFF002AQN.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF002AQP fastq reads ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1459997144 Bing Ren, UCSD 1f804b7f385b9b0fb2c2bcc9db6f9c9a SRA:SRR3652234 https://www.encodeproject.org/files/ENCFF002AQP/@@download/ENCFF002AQP.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF508EFS bam unfiltered alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQP, ENCFF806TVZ 1635624787 ENCODE Processing Pipeline 68a08c0642c759e32450df33c2902dd4 https://www.encodeproject.org/files/ENCFF508EFS/@@download/ENCFF508EFS.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF169TOW bam unfiltered alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQN, ENCFF806TVZ 1218152115 ENCODE Processing Pipeline ee4294c08da60a2444aa3b9373a6c3a5 https://www.encodeproject.org/files/ENCFF169TOW/@@download/ENCFF169TOW.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF576KAS bam alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQN, ENCFF806TVZ 825114902 ENCODE Processing Pipeline 52e43f0e1b6a0132514da657600ebfd9 https://www.encodeproject.org/files/ENCFF576KAS/@@download/ENCFF576KAS.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF362MXD bam alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQP, ENCFF806TVZ 1173628638 ENCODE Processing Pipeline 91b21695a30d51e2f7bf7adb25a5ad2e https://www.encodeproject.org/files/ENCFF362MXD/@@download/ENCFF362MXD.bam mm10-minimal archived mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF890JJG bam unfiltered alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQN, ENCFF018NEO 1220032096 ENCODE Processing Pipeline 6327b11eb5d68e0433f275e17b0629e3 https://www.encodeproject.org/files/ENCFF890JJG/@@download/ENCFF890JJG.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF304BRA bam alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQN, ENCFF018NEO 824874154 ENCODE Processing Pipeline 3de884dd1c0321a961aaac4a46a19d3c https://www.encodeproject.org/files/ENCFF304BRA/@@download/ENCFF304BRA.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF255MPO bam alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQP, ENCFF018NEO 899876502 ENCODE Processing Pipeline f1b549a0249756f8d1ed111b53688dfd https://www.encodeproject.org/files/ENCFF255MPO/@@download/ENCFF255MPO.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF434HBT bam unfiltered alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQP, ENCFF018NEO 1343916487 ENCODE Processing Pipeline 3a2a3f8fe5e523cfa55c57a997d801c6 https://www.encodeproject.org/files/ENCFF434HBT/@@download/ENCFF434HBT.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF001KUM fastq reads ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 30 single-ended 515006905 Bing Ren, UCSD 9f9f0ef4368981d01fdb307493c29389 https://www.encodeproject.org/files/ENCFF001KUM/@@download/ENCFF001KUM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KVR/ released inconsistent platforms, inconsistent control read length insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KUP fastq reads ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 30 single-ended 391533810 Bing Ren, UCSD 71c5b23b5a00957bff37776007d1aefd https://www.encodeproject.org/files/ENCFF001KUP/@@download/ENCFF001KUP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001KWE/ released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KVD bam alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KUM 554188283 Bing Ren, UCSD 68a947e6c4550c0274e751b584fba721 https://www.encodeproject.org/files/ENCFF001KVD/@@download/ENCFF001KVD.bam mm9 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KVE bam alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KUP 409836110 Bing Ren, UCSD 571b6176db130de6eb5bd0bc2a5890ca https://www.encodeproject.org/files/ENCFF001KVE/@@download/ENCFF001KVE.bam mm9 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KVF bigBed broadPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XZC 1475509 Bing Ren, UCSD 6a1e7897efb0f21c8c9f7361622524ea https://www.encodeproject.org/files/ENCFF001KVF/@@download/ENCFF001KVF.bigBed mm9 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KVJ bigWig signal ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KVD, ENCFF001KVE 63132869 Bing Ren, UCSD 9ace5160ce8cce966754faeea8ed4d9c https://www.encodeproject.org/files/ENCFF001KVJ/@@download/ENCFF001KVJ.bigWig mm9 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF001XZC bed broadPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KVD, ENCFF001KVE 742855 Bing Ren, UCSD 285cd877bc17fc0a03748a0d6bf4545a https://www.encodeproject.org/files/ENCFF001XZC/@@download/ENCFF001XZC.bed.gz mm9 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF949YPI bam unfiltered alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 30 ENCFF001KUM, ENCFF018NEO 603146146 ENCODE Processing Pipeline 62984dc3523d343c31236361ffd2997a https://www.encodeproject.org/files/ENCFF949YPI/@@download/ENCFF949YPI.bam mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF802PSU bam alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 30 ENCFF001KUP, ENCFF018NEO 247930831 ENCODE Processing Pipeline d0dc0aae822719aac90ce4b64cb046d7 https://www.encodeproject.org/files/ENCFF802PSU/@@download/ENCFF802PSU.bam mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF235HSG bam unfiltered alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 30 ENCFF001KUP, ENCFF018NEO 448485722 ENCODE Processing Pipeline 520088dde2ceb33e97f950c0cc60d5af https://www.encodeproject.org/files/ENCFF235HSG/@@download/ENCFF235HSG.bam mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF909FML bam alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 30 ENCFF001KUM, ENCFF018NEO 410759170 ENCODE Processing Pipeline 3bd4233dffee6da4bb410ed97cb7bf1c https://www.encodeproject.org/files/ENCFF909FML/@@download/ENCFF909FML.bam mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF367NFR bed narrowPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF909FML 2697037 ENCODE Processing Pipeline 9beb6ae2be1876d9a03ba60eafe183e2 https://www.encodeproject.org/files/ENCFF367NFR/@@download/ENCFF367NFR.bed.gz mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF817MPF bed narrowPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF314OGN, ENCFF705BZU, ENCFF802PSU 2695046 ENCODE Processing Pipeline f593e838453a87b180b3dc19cc785e04 https://www.encodeproject.org/files/ENCFF817MPF/@@download/ENCFF817MPF.bed.gz mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF054ODY bed narrowPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF314OGN, ENCFF705BZU, ENCFF802PSU, ENCFF909FML 2827743 ENCODE Processing Pipeline 2d4156c580fed8c64f1d6fbb34a258d8 https://www.encodeproject.org/files/ENCFF054ODY/@@download/ENCFF054ODY.bed.gz mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF726DIJ bigBed narrowPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF367NFR 7421202 ENCODE Processing Pipeline 5f5e5b92f38d36d77943f51abfd49bae https://www.encodeproject.org/files/ENCFF726DIJ/@@download/ENCFF726DIJ.bigBed mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF928PKN bigBed narrowPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF817MPF 5742389 ENCODE Processing Pipeline 933e7383ce8d9de7544fe7b741fcee86 https://www.encodeproject.org/files/ENCFF928PKN/@@download/ENCFF928PKN.bigBed mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF421JDE bed narrowPeak replicated peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF054ODY, ENCFF367NFR, ENCFF817MPF 1736455 ENCODE Processing Pipeline 26b219ffc795d624c1e51924156b42db https://www.encodeproject.org/files/ENCFF421JDE/@@download/ENCFF421JDE.bed.gz mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF627HJF bigBed narrowPeak peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF054ODY 7792886 ENCODE Processing Pipeline 10da441db67b2561879b269243f389e1 https://www.encodeproject.org/files/ENCFF627HJF/@@download/ENCFF627HJF.bigBed mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF464KII bigWig signal p-value ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF314OGN, ENCFF705BZU, ENCFF802PSU 368137270 ENCODE Processing Pipeline 72bc09b0e0cd420fe48ea2b4648094ce https://www.encodeproject.org/files/ENCFF464KII/@@download/ENCFF464KII.bigWig mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF864LDR bigWig fold change over control ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF314OGN, ENCFF705BZU, ENCFF802PSU 161681154 ENCODE Processing Pipeline b6b3e4492a2174452e201521a27e49b6 https://www.encodeproject.org/files/ENCFF864LDR/@@download/ENCFF864LDR.bigWig mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF202RFR bigWig fold change over control ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF314OGN, ENCFF705BZU, ENCFF802PSU, ENCFF909FML 378985729 ENCODE Processing Pipeline e9e1c84088250d422e6829cbb2147721 https://www.encodeproject.org/files/ENCFF202RFR/@@download/ENCFF202RFR.bigWig mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF610MVJ bigWig fold change over control ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF909FML 271795939 ENCODE Processing Pipeline bddf51658a35eba67f7d1799fb297ba8 https://www.encodeproject.org/files/ENCFF610MVJ/@@download/ENCFF610MVJ.bigWig mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF599WTX bigWig signal p-value ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF314OGN, ENCFF705BZU, ENCFF909FML 426096454 ENCODE Processing Pipeline b2746edd6402c16de14c69131134382c https://www.encodeproject.org/files/ENCFF599WTX/@@download/ENCFF599WTX.bigWig mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF087HEZ bigWig signal p-value ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF314OGN, ENCFF705BZU, ENCFF802PSU, ENCFF909FML 490542222 ENCODE Processing Pipeline a4d3ad40ee7230c8d4416ea691741c92 https://www.encodeproject.org/files/ENCFF087HEZ/@@download/ENCFF087HEZ.bigWig mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF780NHD bigBed narrowPeak replicated peaks ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF421JDE 3875647 ENCODE Processing Pipeline dec90163f9d39b7b2e74f88197444c64 https://www.encodeproject.org/files/ENCFF780NHD/@@download/ENCFF780NHD.bigBed mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF001KYX bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 1125122480 Bing Ren, UCSD 0c0b087d792fffa78c915bab2f5061d3 https://www.encodeproject.org/files/ENCFF001KYX/@@download/ENCFF001KYX.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity missing derived_from, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF001KYY bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KZF 1112272220 Bing Ren, UCSD bb7c43da4075343603b4357b5db61c47 https://www.encodeproject.org/files/ENCFF001KYY/@@download/ENCFF001KYY.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF001KZA bigBed broadPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZP 366391 Bing Ren, UCSD cf72823213555855e5caa04ee69c975a https://www.encodeproject.org/files/ENCFF001KZA/@@download/ENCFF001KZA.bigBed mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF001KZB bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KZL 871448740 Bing Ren, UCSD db867f57609e6cb95b50590350add156 https://www.encodeproject.org/files/ENCFF001KZB/@@download/ENCFF001KZB.bam mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF001KZE bigWig signal ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KYY, ENCFF001KZB 18091754 Bing Ren, UCSD d056ba98d80319f25602ded92a891fc6 https://www.encodeproject.org/files/ENCFF001KZE/@@download/ENCFF001KZE.bigWig mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF001KZF fastq reads ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 30 single-ended 1156343588 Bing Ren, UCSD f8c55ee8824f5e0f6504dfc82dbd4501 https://www.encodeproject.org/files/ENCFF001KZF/@@download/ENCFF001KZF.fastq.gz Illumina HiSeq 2000 /files/ENCFF786ODW/ archived mild to moderate bottlenecking, low read depth, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF001KZL fastq reads ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 45 single-ended 955991607 Bing Ren, UCSD d6a791152de14028e88fb5a093bb15c5 https://www.encodeproject.org/files/ENCFF001KZL/@@download/ENCFF001KZL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ archived mild to moderate bottlenecking, low read depth, mixed read lengths, inconsistent platforms, inconsistent control read length, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF001KZP fastq reads ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 1249053687 Bing Ren, UCSD 070a0f300bdaba30a575c56c2c666344 https://www.encodeproject.org/files/ENCFF001KZP/@@download/ENCFF001KZP.fastq.gz Illumina HiSeq 2000 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths missing controlled_by, insufficient read length control extremely low read depth ENCFF001XZP bed broadPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KYY, ENCFF001KZB 243848 Bing Ren, UCSD 0437dbe7dbe022fb85b178a7dd6497a0 https://www.encodeproject.org/files/ENCFF001XZP/@@download/ENCFF001XZP.bed.gz mm9 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF844PZQ bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KZL, ENCFF806TVZ 558390348 ENCODE Processing Pipeline e12a82fd2eaca5c89026da2cdfb29119 https://www.encodeproject.org/files/ENCFF844PZQ/@@download/ENCFF844PZQ.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF419IYU bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KZF, ENCFF806TVZ 459314622 ENCODE Processing Pipeline 75345e49545bd75fcb0a76147ec60586 https://www.encodeproject.org/files/ENCFF419IYU/@@download/ENCFF419IYU.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF516BDJ bam unfiltered alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KZF, ENCFF018NEO 1117644785 ENCODE Processing Pipeline 90ba0b4682ae919572a57d92973b44cb https://www.encodeproject.org/files/ENCFF516BDJ/@@download/ENCFF516BDJ.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF639RUY bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KZF, ENCFF018NEO 459344385 ENCODE Processing Pipeline 96dbdaea4c8e597d37f6990cd317e01b https://www.encodeproject.org/files/ENCFF639RUY/@@download/ENCFF639RUY.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF339RDM bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 45 ENCFF001KZL, ENCFF018NEO 558458719 ENCODE Processing Pipeline 5a152c744684ad255253c9525b22fd49 https://www.encodeproject.org/files/ENCFF339RDM/@@download/ENCFF339RDM.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF352YYO bigBed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF429JSN 2400152 ENCODE Processing Pipeline 07ac3873708d90ca70eabd45eee492a1 https://www.encodeproject.org/files/ENCFF352YYO/@@download/ENCFF352YYO.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF274JIP bigBed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF271QCZ 2085305 ENCODE Processing Pipeline 1bf0155c2be544e8ccf81629ab3b43a9 https://www.encodeproject.org/files/ENCFF274JIP/@@download/ENCFF274JIP.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF187QRM bigBed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF658GDS 1940549 ENCODE Processing Pipeline cd9530f90911a368b5256ee54934c02e https://www.encodeproject.org/files/ENCFF187QRM/@@download/ENCFF187QRM.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF017BPK bigBed narrowPeak replicated peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF174ILP 1914469 ENCODE Processing Pipeline 6dee35c2570b1cd9d9784b8cb162bd7e https://www.encodeproject.org/files/ENCFF017BPK/@@download/ENCFF017BPK.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF658GDS bed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288ZGZ, ENCFF339RDM, ENCFF379WSY 652662 ENCODE Processing Pipeline 27f459d48a5c52be58a4be26930b5f4a https://www.encodeproject.org/files/ENCFF658GDS/@@download/ENCFF658GDS.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF271QCZ bed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288ZGZ, ENCFF339RDM, ENCFF379WSY, ENCFF639RUY 732228 ENCODE Processing Pipeline 83199e0006ca2ced3e845782075aa418 https://www.encodeproject.org/files/ENCFF271QCZ/@@download/ENCFF271QCZ.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF308NRZ bigWig signal p-value ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288ZGZ, ENCFF339RDM, ENCFF379WSY 348636025 ENCODE Processing Pipeline 9fa255638bc87c60a270620e7e856c94 https://www.encodeproject.org/files/ENCFF308NRZ/@@download/ENCFF308NRZ.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF174ILP bed narrowPeak replicated peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF271QCZ, ENCFF429JSN, ENCFF658GDS 888138 ENCODE Processing Pipeline 8ee4b9fbc337ced64bc1815a7508ca23 https://www.encodeproject.org/files/ENCFF174ILP/@@download/ENCFF174ILP.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF260LQT bigWig signal p-value ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288ZGZ, ENCFF379WSY, ENCFF639RUY 338683451 ENCODE Processing Pipeline 5893de1636e0429fca2010f4609d8a16 https://www.encodeproject.org/files/ENCFF260LQT/@@download/ENCFF260LQT.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF369TKW bigWig fold change over control ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288ZGZ, ENCFF339RDM, ENCFF379WSY 165528718 ENCODE Processing Pipeline 2f97ce4c35c243680257a0172a2a7e8d https://www.encodeproject.org/files/ENCFF369TKW/@@download/ENCFF369TKW.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF429JSN bed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288ZGZ, ENCFF379WSY, ENCFF639RUY 813681 ENCODE Processing Pipeline 116452512564e1345f7a46a10a87c9eb https://www.encodeproject.org/files/ENCFF429JSN/@@download/ENCFF429JSN.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF204JXR bigWig signal p-value ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288ZGZ, ENCFF339RDM, ENCFF379WSY, ENCFF639RUY 418502440 ENCODE Processing Pipeline abe41fd2295400f3d7ec27dda48006f6 https://www.encodeproject.org/files/ENCFF204JXR/@@download/ENCFF204JXR.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF082XZE bigWig fold change over control ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF288ZGZ, ENCFF379WSY, ENCFF639RUY 157530169 ENCODE Processing Pipeline 63ca63c7bba121516b0440ab6a9697e2 https://www.encodeproject.org/files/ENCFF082XZE/@@download/ENCFF082XZE.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF279ISB bigWig fold change over control ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF288ZGZ, ENCFF339RDM, ENCFF379WSY, ENCFF639RUY 263074048 ENCODE Processing Pipeline 3be702543708256ed5e32d371098e8bb https://www.encodeproject.org/files/ENCFF279ISB/@@download/ENCFF279ISB.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity mismatched status, out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF956VGV bam alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KZL, ENCFF018NEO 432185825 ENCODE Processing Pipeline 335eba369e372abc519b6638470eed4e https://www.encodeproject.org/files/ENCFF956VGV/@@download/ENCFF956VGV.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF906VII bam unfiltered alignments ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KZL, ENCFF018NEO 688934910 ENCODE Processing Pipeline f51d36a7bbbadbc9d55ac32562dc8493 https://www.encodeproject.org/files/ENCFF906VII/@@download/ENCFF906VII.bam mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF195JPE bigWig signal p-value ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF956VGV 377915544 ENCODE Processing Pipeline 427f726e0a53584f8bf16c981d011fea https://www.encodeproject.org/files/ENCFF195JPE/@@download/ENCFF195JPE.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF070WHG bigWig fold change over control ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF956VGV 167998188 ENCODE Processing Pipeline fd4f88218bad14d840bc3016f8054f90 https://www.encodeproject.org/files/ENCFF070WHG/@@download/ENCFF070WHG.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF907LAM bigWig fold change over control ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF639RUY, ENCFF956VGV 252741631 ENCODE Processing Pipeline 4da16840ed535ecf43812fec49cf5ab4 https://www.encodeproject.org/files/ENCFF907LAM/@@download/ENCFF907LAM.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF329XQI bigBed narrowPeak replicated peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF863NIZ 1924930 ENCODE Processing Pipeline 46f731af1c914273db0ee92a491123e4 https://www.encodeproject.org/files/ENCFF329XQI/@@download/ENCFF329XQI.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF497UVP bed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF639RUY 813223 ENCODE Processing Pipeline 2d533f23b89c433c71fe5b2fe6b40092 https://www.encodeproject.org/files/ENCFF497UVP/@@download/ENCFF497UVP.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF876KOB bigBed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF109VXN 2109173 ENCODE Processing Pipeline 24700c807dadec763193ea4f3827f713 https://www.encodeproject.org/files/ENCFF876KOB/@@download/ENCFF876KOB.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF490BRO bigWig signal p-value ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF639RUY 331557815 ENCODE Processing Pipeline 50852fd326b9b3704baa4a5e958ded3a https://www.encodeproject.org/files/ENCFF490BRO/@@download/ENCFF490BRO.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF464SZI bigWig fold change over control ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF639RUY 157575664 ENCODE Processing Pipeline 7092c832f26fc259453386b9cebc167a https://www.encodeproject.org/files/ENCFF464SZI/@@download/ENCFF464SZI.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF580OFC bigBed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF497UVP 2396498 ENCODE Processing Pipeline b307c9e9581adf065b3e791c12c0daaa https://www.encodeproject.org/files/ENCFF580OFC/@@download/ENCFF580OFC.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF214UDK bed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF956VGV 668482 ENCODE Processing Pipeline e549ed5f9b9bc4a733e8d11cd8c39c3d https://www.encodeproject.org/files/ENCFF214UDK/@@download/ENCFF214UDK.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF973YCJ bigBed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF214UDK 1967003 ENCODE Processing Pipeline f7697606201e72cf22987dcd1089f0fb https://www.encodeproject.org/files/ENCFF973YCJ/@@download/ENCFF973YCJ.bigBed mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF275YZI bigWig signal p-value ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF639RUY, ENCFF956VGV 408148547 ENCODE Processing Pipeline 2197c9c170df0260a17d1eb6722a4aa0 https://www.encodeproject.org/files/ENCFF275YZI/@@download/ENCFF275YZI.bigWig mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF109VXN bed narrowPeak peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF639RUY, ENCFF956VGV 740941 ENCODE Processing Pipeline c1640f9788e3aa884c6241d6ca1a608f https://www.encodeproject.org/files/ENCFF109VXN/@@download/ENCFF109VXN.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF863NIZ bed narrowPeak replicated peaks ENCSR000CDA ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF109VXN, ENCFF214UDK, ENCFF497UVP 894165 ENCODE Processing Pipeline 29732026bd8dc1624b7d272ba8cae2d8 https://www.encodeproject.org/files/ENCFF863NIZ/@@download/ENCFF863NIZ.bed.gz mm10 archived mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity out of date analysis, missing unfiltered alignments, inconsistent mapped reads lengths insufficient read length control extremely low read depth ENCFF002AGS fastq reads ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 2874609109 Bing Ren, UCSD b660ad78402a03c41831b6173806ad85 SRA:SRR3651883 https://www.encodeproject.org/files/ENCFF002AGS/@@download/ENCFF002AGS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQH/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF002AGT fastq reads ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 2306248907 Bing Ren, UCSD 1c21559944f6206e9b3785693335dd4f SRA:SRR3651882 https://www.encodeproject.org/files/ENCFF002AGT/@@download/ENCFF002AGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQD/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF855GLJ bam alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGS, ENCFF806TVZ 1439061449 ENCODE Processing Pipeline fecf36431a340e188ab30760bda58d69 https://www.encodeproject.org/files/ENCFF855GLJ/@@download/ENCFF855GLJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF386CAO bam alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGT, ENCFF806TVZ 1471565440 ENCODE Processing Pipeline b2e8f2120aea505f0698755e8648e497 https://www.encodeproject.org/files/ENCFF386CAO/@@download/ENCFF386CAO.bam mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF791YVX bed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF386CAO, ENCFF999ZTB 533297 ENCODE Processing Pipeline cc113125bdab5ff0047e3bb190a0d722 https://www.encodeproject.org/files/ENCFF791YVX/@@download/ENCFF791YVX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF865DDJ bed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF855GLJ, ENCFF999ZTB 632951 ENCODE Processing Pipeline aa5a9977d21fa4b88747af4bcf98d746 https://www.encodeproject.org/files/ENCFF865DDJ/@@download/ENCFF865DDJ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF304HMC bed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF386CAO, ENCFF855GLJ, ENCFF999ZTB 403743 ENCODE Processing Pipeline 497cce26a68659aef8471d446499f11d https://www.encodeproject.org/files/ENCFF304HMC/@@download/ENCFF304HMC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF318MMJ bigBed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF791YVX 1168452 ENCODE Processing Pipeline 04c32015a43d2ab860f03c821da93bb2 https://www.encodeproject.org/files/ENCFF318MMJ/@@download/ENCFF318MMJ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF122ROS bigBed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF304HMC 1089429 ENCODE Processing Pipeline e9c530487414cde1fc05b6de814b59d2 https://www.encodeproject.org/files/ENCFF122ROS/@@download/ENCFF122ROS.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF270PZQ bigWig signal p-value ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF386CAO, ENCFF999ZTB 385710595 ENCODE Processing Pipeline 0516511b2790d5c74e413a7eb319d871 https://www.encodeproject.org/files/ENCFF270PZQ/@@download/ENCFF270PZQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF309OMR bigBed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF865DDJ 1362176 ENCODE Processing Pipeline e7b7d9bcb1dcce1df16eb308f31f5273 https://www.encodeproject.org/files/ENCFF309OMR/@@download/ENCFF309OMR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF218WIB bigWig signal p-value ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF855GLJ, ENCFF999ZTB 386762626 ENCODE Processing Pipeline 0bae8e64992f0741f9114efb93d80ea0 https://www.encodeproject.org/files/ENCFF218WIB/@@download/ENCFF218WIB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF314XZF bigWig signal p-value ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF386CAO, ENCFF855GLJ, ENCFF999ZTB 373623603 ENCODE Processing Pipeline dbaab6fabbdcd2c2735519048037c135 https://www.encodeproject.org/files/ENCFF314XZF/@@download/ENCFF314XZF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF254BRT bigWig fold change over control ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF015AUK, ENCFF855GLJ, ENCFF999ZTB 462439221 ENCODE Processing Pipeline 0e614dd3ff84b9b8b4999039eac04d73 https://www.encodeproject.org/files/ENCFF254BRT/@@download/ENCFF254BRT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF271CDJ bigWig fold change over control ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF015AUK, ENCFF386CAO, ENCFF999ZTB 462148832 ENCODE Processing Pipeline db34553aea3fb1045412b74591fb973e https://www.encodeproject.org/files/ENCFF271CDJ/@@download/ENCFF271CDJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF549LDC bigWig fold change over control ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015AUK, ENCFF386CAO, ENCFF855GLJ, ENCFF999ZTB 791160521 ENCODE Processing Pipeline e058a439c1c3c3fbf2a012cbd6a5d11c https://www.encodeproject.org/files/ENCFF549LDC/@@download/ENCFF549LDC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF640ZPL bed narrowPeak replicated peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF304HMC, ENCFF791YVX, ENCFF865DDJ 377412 ENCODE Processing Pipeline b1975364426038067530945530be0d9e https://www.encodeproject.org/files/ENCFF640ZPL/@@download/ENCFF640ZPL.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF763VPF bigBed narrowPeak replicated peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF640ZPL 927668 ENCODE Processing Pipeline e0f96ede6ef220e199c9451e2122f23d https://www.encodeproject.org/files/ENCFF763VPF/@@download/ENCFF763VPF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF678VJQ bam unfiltered alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGS, ENCFF018NEO 2938202210 ENCODE Processing Pipeline f4cd286c8d4119e37ee86eb598d4f3bc https://www.encodeproject.org/files/ENCFF678VJQ/@@download/ENCFF678VJQ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF340HOW bam unfiltered alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGT, ENCFF018NEO 2444877006 ENCODE Processing Pipeline b7932fde9da5b78ec32aa308b5894fc1 https://www.encodeproject.org/files/ENCFF340HOW/@@download/ENCFF340HOW.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF886NKI bam alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGS, ENCFF018NEO 1438747095 ENCODE Processing Pipeline a7fd32e5b1115904d4751b65d6d3f704 https://www.encodeproject.org/files/ENCFF886NKI/@@download/ENCFF886NKI.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF676PSX bam alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGT, ENCFF018NEO 1471236130 ENCODE Processing Pipeline dc34a894deee29915e36cc09b934ece6 https://www.encodeproject.org/files/ENCFF676PSX/@@download/ENCFF676PSX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF485SZV bigBed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF404THB 845436 ENCODE Processing Pipeline 05500ebe78bc36f71d0331aa2309117e https://www.encodeproject.org/files/ENCFF485SZV/@@download/ENCFF485SZV.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF840AZD bed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF310BPU, ENCFF676PSX, ENCFF886NKI, ENCFF957ZHQ 364897 ENCODE Processing Pipeline ef8ba2f374b4b4697fdecb67323333db https://www.encodeproject.org/files/ENCFF840AZD/@@download/ENCFF840AZD.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF404THB bed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF886NKI, ENCFF957ZHQ 300613 ENCODE Processing Pipeline a6c1cfa75f946f02c093eebcf8c79189 https://www.encodeproject.org/files/ENCFF404THB/@@download/ENCFF404THB.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF717QCV bed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310BPU, ENCFF676PSX, ENCFF957ZHQ 412708 ENCODE Processing Pipeline 36aac3f8ad2c39b58dcf7d0794e5de44 https://www.encodeproject.org/files/ENCFF717QCV/@@download/ENCFF717QCV.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF474SBO bigBed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF717QCV 1133700 ENCODE Processing Pipeline cfbceaaa25ffa41ac0184f899262519a https://www.encodeproject.org/files/ENCFF474SBO/@@download/ENCFF474SBO.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF774UAM bigBed narrowPeak peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF840AZD 994925 ENCODE Processing Pipeline 520ef91094f92cec65f48ad97c70e61a https://www.encodeproject.org/files/ENCFF774UAM/@@download/ENCFF774UAM.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF248ECU bigWig signal p-value ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310BPU, ENCFF676PSX, ENCFF957ZHQ 371848611 ENCODE Processing Pipeline 2a7d97059aef38ba6955d9481ef7ea80 https://www.encodeproject.org/files/ENCFF248ECU/@@download/ENCFF248ECU.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF365DCS bigWig fold change over control ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310BPU, ENCFF676PSX, ENCFF957ZHQ 482763550 ENCODE Processing Pipeline 4d9681ded11021f562957ac3d538949d https://www.encodeproject.org/files/ENCFF365DCS/@@download/ENCFF365DCS.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF158MNT bigWig signal p-value ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF886NKI, ENCFF957ZHQ 187743485 ENCODE Processing Pipeline f55d3f898f579a89ddae995496ccca81 https://www.encodeproject.org/files/ENCFF158MNT/@@download/ENCFF158MNT.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF306DQV bigWig signal p-value ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF310BPU, ENCFF676PSX, ENCFF886NKI, ENCFF957ZHQ 365902846 ENCODE Processing Pipeline c5ae85c673df003d42bd98360a09983a https://www.encodeproject.org/files/ENCFF306DQV/@@download/ENCFF306DQV.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF035UHY bigWig fold change over control ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF310BPU, ENCFF676PSX, ENCFF886NKI, ENCFF957ZHQ 799485130 ENCODE Processing Pipeline 9aa0ae7fecf7a69afb33191c154d24c4 https://www.encodeproject.org/files/ENCFF035UHY/@@download/ENCFF035UHY.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF999LFC bigWig fold change over control ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF886NKI, ENCFF957ZHQ 415535582 ENCODE Processing Pipeline e28b48f774ecca8585b29582d9ede7ae https://www.encodeproject.org/files/ENCFF999LFC/@@download/ENCFF999LFC.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF624TNH bed narrowPeak replicated peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF404THB, ENCFF717QCV, ENCFF840AZD 309222 ENCODE Processing Pipeline 89ad0357f7ad2f1062a88e01730be322 https://www.encodeproject.org/files/ENCFF624TNH/@@download/ENCFF624TNH.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF286DPM bigBed narrowPeak replicated peaks ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF624TNH 784137 ENCODE Processing Pipeline 9667c0a447219c4c1539e636631ee26d https://www.encodeproject.org/files/ENCFF286DPM/@@download/ENCFF286DPM.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF165FEC fastq reads ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 1 50 single-ended 2745555977 Christina Leslie, MSKCC d4962defc249a30c08a8764a279d8750 https://www.encodeproject.org/files/ENCFF165FEC/@@download/ENCFF165FEC.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF872EPX fastq reads ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 2 50 single-ended 2724357191 Christina Leslie, MSKCC 41e89aed7200ca3bf669229a586c2446 https://www.encodeproject.org/files/ENCFF872EPX/@@download/ENCFF872EPX.fastq.gz Illumina HiSeq 2000 released experiment not submitted to GEO, NTR biosample missing controlled_by, unreplicated experiment ENCFF769HGQ bam alignments ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF165FEC 2063262178 Christina Leslie, MSKCC d24dfde4437df6aca2e7380c3809c847 https://www.encodeproject.org/files/ENCFF769HGQ/@@download/ENCFF769HGQ.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF300USM bam alignments ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF872EPX 2223515526 Christina Leslie, MSKCC 81467a8857ad0ee11c50cae95cbfdc57 https://www.encodeproject.org/files/ENCFF300USM/@@download/ENCFF300USM.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF872WIN tsv enrichment ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF608UQC, ENCFF769HGQ 267744 Christina Leslie, MSKCC 0fc1a9f4f9d4f21c3d4bda67c0f54117 https://www.encodeproject.org/files/ENCFF872WIN/@@download/ENCFF872WIN.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF701GQO tsv enrichment ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF300USM, ENCFF608UQC 268959 Christina Leslie, MSKCC ccb65c900e578181236f64cf7bfc3c47 https://www.encodeproject.org/files/ENCFF701GQO/@@download/ENCFF701GQO.tsv mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF002APQ fastq reads ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1162981551 Bing Ren, UCSD bacf79c8ac126faf859637b330dbc45d SRA:SRR3651670 https://www.encodeproject.org/files/ENCFF002APQ/@@download/ENCFF002APQ.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF002APT fastq reads ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1038459312 Bing Ren, UCSD 6af38d1747c0679895f64296bef88237 SRA:SRR3651669 https://www.encodeproject.org/files/ENCFF002APT/@@download/ENCFF002APT.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF730RGY bam unfiltered alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APQ, ENCFF806TVZ 1396193026 ENCODE Processing Pipeline eca2bcbe7125e6bd43827f9221a85b1a https://www.encodeproject.org/files/ENCFF730RGY/@@download/ENCFF730RGY.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF342JDR bam unfiltered alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APT, ENCFF806TVZ 1250816077 ENCODE Processing Pipeline c724439487be2c4d718f1f0ca9c4313f https://www.encodeproject.org/files/ENCFF342JDR/@@download/ENCFF342JDR.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF528CCC bam alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APT, ENCFF806TVZ 831181642 ENCODE Processing Pipeline b6f6fa1027722abaa34b22d216ca9978 https://www.encodeproject.org/files/ENCFF528CCC/@@download/ENCFF528CCC.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF351THT bam alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APQ, ENCFF806TVZ 917733868 ENCODE Processing Pipeline be777d9b9c37fde0a4abc6ed4c97f0ff https://www.encodeproject.org/files/ENCFF351THT/@@download/ENCFF351THT.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF204NLG bam unfiltered alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APT, ENCFF018NEO 1252493784 ENCODE Processing Pipeline c680e67f0f389fcf5129e7657a4adaa5 https://www.encodeproject.org/files/ENCFF204NLG/@@download/ENCFF204NLG.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF730FKB bam unfiltered alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APQ, ENCFF018NEO 1397782058 ENCODE Processing Pipeline 69dd633b8db1d8937b074a81f285121a https://www.encodeproject.org/files/ENCFF730FKB/@@download/ENCFF730FKB.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF037YEE bam alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APT, ENCFF018NEO 830908174 ENCODE Processing Pipeline 8bde96b44b642a03e4e624fc1ef1bafc https://www.encodeproject.org/files/ENCFF037YEE/@@download/ENCFF037YEE.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF411XWG bam alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APQ, ENCFF018NEO 917452662 ENCODE Processing Pipeline 6a6896a3d92f2a94bde133934c2247ec https://www.encodeproject.org/files/ENCFF411XWG/@@download/ENCFF411XWG.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF087GGM fastq reads ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 50 single-ended 2182553962 Bing Ren, UCSD d15e2e4f3da8c31491aaaf38abdaa614 SRA:SRR3651564 https://www.encodeproject.org/files/ENCFF087GGM/@@download/ENCFF087GGM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF629NUN fastq reads ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 802405304 Bing Ren, UCSD e935a97183af37154158d19f88e0ad49 SRA:SRR3651562 https://www.encodeproject.org/files/ENCFF629NUN/@@download/ENCFF629NUN.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF069FVN fastq reads ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 36 single-ended 929799143 Bing Ren, UCSD 0ea622c0da5f680fa5399d253229c743 SRA:SRR3651563 https://www.encodeproject.org/files/ENCFF069FVN/@@download/ENCFF069FVN.fastq.gz Illumina HiSeq 2500 /files/ENCFF249RWY/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF024RNM bam alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF069FVN, ENCFF629NUN, ENCFF806TVZ 984950286 ENCODE Processing Pipeline fa256a3c342c7cc7924b13e67523eef4 https://www.encodeproject.org/files/ENCFF024RNM/@@download/ENCFF024RNM.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF799JCV bam alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF087GGM, ENCFF806TVZ 1633516342 ENCODE Processing Pipeline 9ae19170edc93bccc7958ad545aa3589 https://www.encodeproject.org/files/ENCFF799JCV/@@download/ENCFF799JCV.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF963SMA bed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF799JCV 2242146 ENCODE Processing Pipeline 7a55e67c3e5e19a48fe6b650b12e4d60 https://www.encodeproject.org/files/ENCFF963SMA/@@download/ENCFF963SMA.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF507UVJ bigBed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF963SMA 4259012 ENCODE Processing Pipeline e31a7c8a3df0e55e928d4454ffed5132 https://www.encodeproject.org/files/ENCFF507UVJ/@@download/ENCFF507UVJ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF478GGJ bed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF024RNM, ENCFF439PVF, ENCFF578PIN 2472756 ENCODE Processing Pipeline 1604cda590c68f576d9370d254b5ad57 https://www.encodeproject.org/files/ENCFF478GGJ/@@download/ENCFF478GGJ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF071KBK bigBed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF363JAZ 4661556 ENCODE Processing Pipeline fa3b65de2428b464267b9ba2e851bfcb https://www.encodeproject.org/files/ENCFF071KBK/@@download/ENCFF071KBK.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF357VUH bigWig signal p-value ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF799JCV 433588370 ENCODE Processing Pipeline b0640d039934b4b80cde17d378951a94 https://www.encodeproject.org/files/ENCFF357VUH/@@download/ENCFF357VUH.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF363JAZ bed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF024RNM, ENCFF439PVF, ENCFF578PIN, ENCFF799JCV 1959165 ENCODE Processing Pipeline 34b3130fdb0e6178a575e7cc49291845 https://www.encodeproject.org/files/ENCFF363JAZ/@@download/ENCFF363JAZ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF200ZZJ bigBed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF478GGJ 4668201 ENCODE Processing Pipeline 7f57ee509c7adc2616aa89a1bf2ce3a1 https://www.encodeproject.org/files/ENCFF200ZZJ/@@download/ENCFF200ZZJ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF560JKW bigWig signal p-value ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF024RNM, ENCFF439PVF, ENCFF578PIN 432315352 ENCODE Processing Pipeline e8861b9b00124f153a159e9bddca8dae https://www.encodeproject.org/files/ENCFF560JKW/@@download/ENCFF560JKW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF029ZGF bigWig signal p-value ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF024RNM, ENCFF439PVF, ENCFF578PIN, ENCFF799JCV 607170929 ENCODE Processing Pipeline e649a04ae68de6003fb1edbd39a1817a https://www.encodeproject.org/files/ENCFF029ZGF/@@download/ENCFF029ZGF.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF839RPI bigWig fold change over control ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF024RNM, ENCFF439PVF, ENCFF578PIN 444402872 ENCODE Processing Pipeline f54c8400b1c4903183dc5ba9ce42a2fd https://www.encodeproject.org/files/ENCFF839RPI/@@download/ENCFF839RPI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF297TZY bigWig fold change over control ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF799JCV 545190883 ENCODE Processing Pipeline 07179d29e42ac66e3e2794277ad9e5b2 https://www.encodeproject.org/files/ENCFF297TZY/@@download/ENCFF297TZY.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF643MFN bed narrowPeak replicated peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF363JAZ, ENCFF478GGJ, ENCFF963SMA 1887930 ENCODE Processing Pipeline c871b0afef4d57fd7b668e7f01d08985 https://www.encodeproject.org/files/ENCFF643MFN/@@download/ENCFF643MFN.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF269MLF bigBed narrowPeak replicated peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF643MFN 3817485 ENCODE Processing Pipeline fd76affb44b33437903f26de984d4907 https://www.encodeproject.org/files/ENCFF269MLF/@@download/ENCFF269MLF.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF053ING bigWig fold change over control ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF024RNM, ENCFF439PVF, ENCFF578PIN, ENCFF799JCV 805257773 ENCODE Processing Pipeline 14c6c2a8fd28e5fdcc165ad74ac07514 https://www.encodeproject.org/files/ENCFF053ING/@@download/ENCFF053ING.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF015TMM bam unfiltered alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF069FVN, ENCFF629NUN 1916681086 ENCODE Processing Pipeline b8153981880fdd1fba025cf85a47e4b6 https://www.encodeproject.org/files/ENCFF015TMM/@@download/ENCFF015TMM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF148SON bam alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF069FVN, ENCFF629NUN 838649479 ENCODE Processing Pipeline 81bb78bd824a686dd0fa98d27ec41da4 https://www.encodeproject.org/files/ENCFF148SON/@@download/ENCFF148SON.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF554CCF bam unfiltered alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF087GGM 2167639452 ENCODE Processing Pipeline 762bd83ae120a336b06dad6cf6b98cbd https://www.encodeproject.org/files/ENCFF554CCF/@@download/ENCFF554CCF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF295UQF bam alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF087GGM 1197774876 ENCODE Processing Pipeline c97b511ce89d52dab1053da87a926f6e https://www.encodeproject.org/files/ENCFF295UQF/@@download/ENCFF295UQF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF721ART bed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF148SON, ENCFF295UQF, ENCFF397HOQ, ENCFF749WCS 2108785 ENCODE Processing Pipeline 3a7abc0d0324bb1ce41f069971a908d0 https://www.encodeproject.org/files/ENCFF721ART/@@download/ENCFF721ART.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF119THV bed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF148SON, ENCFF397HOQ, ENCFF749WCS 2447123 ENCODE Processing Pipeline aacdb1cc665dca2add66c1295f779c63 https://www.encodeproject.org/files/ENCFF119THV/@@download/ENCFF119THV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF936KNS bigBed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF119THV 4633102 ENCODE Processing Pipeline 855eccce7a6523e8a08541b62db3ec51 https://www.encodeproject.org/files/ENCFF936KNS/@@download/ENCFF936KNS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF195DQS bed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF295UQF, ENCFF397HOQ, ENCFF749WCS 2397685 ENCODE Processing Pipeline 089f08fa2f94dbb32b41e870ec936f69 https://www.encodeproject.org/files/ENCFF195DQS/@@download/ENCFF195DQS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF736NDU bigBed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF195DQS 4562345 ENCODE Processing Pipeline 496b1dd58148f38df9469021c93ed9a2 https://www.encodeproject.org/files/ENCFF736NDU/@@download/ENCFF736NDU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF650PJP bigBed narrowPeak peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF721ART 5025260 ENCODE Processing Pipeline e21cde55943b802063dcf1abd2b6a7a1 https://www.encodeproject.org/files/ENCFF650PJP/@@download/ENCFF650PJP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF308LXJ bigWig signal p-value ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF148SON, ENCFF397HOQ, ENCFF749WCS 411792573 ENCODE Processing Pipeline 88d9f8ed084141ad5ff28e652c217253 https://www.encodeproject.org/files/ENCFF308LXJ/@@download/ENCFF308LXJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF925RFA bigWig signal p-value ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF148SON, ENCFF295UQF, ENCFF397HOQ, ENCFF749WCS 594819179 ENCODE Processing Pipeline bca7b8a90724ce32833117263104ffc3 https://www.encodeproject.org/files/ENCFF925RFA/@@download/ENCFF925RFA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF482FXM bigWig signal p-value ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF295UQF, ENCFF397HOQ, ENCFF749WCS 468988434 ENCODE Processing Pipeline 7c265ae4a3e381778b241903b2b31873 https://www.encodeproject.org/files/ENCFF482FXM/@@download/ENCFF482FXM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF496WAZ bigWig fold change over control ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF295UQF, ENCFF397HOQ, ENCFF749WCS 517262453 ENCODE Processing Pipeline 6602ec92983b4505d272a5337ce67598 https://www.encodeproject.org/files/ENCFF496WAZ/@@download/ENCFF496WAZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF944OHH bigWig fold change over control ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF148SON, ENCFF397HOQ, ENCFF749WCS 436830700 ENCODE Processing Pipeline ec31a045ee9ac482e7504f13fe380daa https://www.encodeproject.org/files/ENCFF944OHH/@@download/ENCFF944OHH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF692XLZ bigWig fold change over control ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF148SON, ENCFF295UQF, ENCFF397HOQ, ENCFF749WCS 763757959 ENCODE Processing Pipeline 1e884bafc580bc0f50b271300f5d9b5a https://www.encodeproject.org/files/ENCFF692XLZ/@@download/ENCFF692XLZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF310IEN bed narrowPeak replicated peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF119THV, ENCFF195DQS, ENCFF721ART 1886892 ENCODE Processing Pipeline d5531554c2e7c451410188505e7a7458 https://www.encodeproject.org/files/ENCFF310IEN/@@download/ENCFF310IEN.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF503YMC bigBed narrowPeak replicated peaks ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF310IEN 3807856 ENCODE Processing Pipeline 93e83b242bdbbe0f973649904feaf03e https://www.encodeproject.org/files/ENCFF503YMC/@@download/ENCFF503YMC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001IGA bigBed narrowPeak peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XVC 639692 Barbara Wold, Caltech fe4b19e314e77880e5cc953d2f50ad39 https://www.encodeproject.org/files/ENCFF001IGA/@@download/ENCFF001IGA.bigBed mm9 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IGB fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 271153228 Barbara Wold, Caltech bf031200417f64458ab0600f2182e41e https://www.encodeproject.org/files/ENCFF001IGB/@@download/ENCFF001IGB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IGC fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 206524109 Barbara Wold, Caltech 8705ce15b2072a5c057d105c34720458 https://www.encodeproject.org/files/ENCFF001IGC/@@download/ENCFF001IGC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IGD fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 358558672 Barbara Wold, Caltech 83b2b7a183a883dcb89dafa03233b287 https://www.encodeproject.org/files/ENCFF001IGD/@@download/ENCFF001IGD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IGE fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 373146875 Barbara Wold, Caltech ad49c5a1c71670c001b78cb469fad61c https://www.encodeproject.org/files/ENCFF001IGE/@@download/ENCFF001IGE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IGG fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 286038108 Barbara Wold, Caltech 3b8dd0d8a1b4b065d24e762fa811fadd https://www.encodeproject.org/files/ENCFF001IGG/@@download/ENCFF001IGG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IGH fastq reads ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 274651076 Barbara Wold, Caltech 18d59f242692672abf157f74249cb7ff https://www.encodeproject.org/files/ENCFF001IGH/@@download/ENCFF001IGH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001IGI bigWig signal ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 70571982 Barbara Wold, Caltech 84952444a3193cc40dfb19c74045ad10 https://www.encodeproject.org/files/ENCFF001IGI/@@download/ENCFF001IGI.bigWig mm9 released mild to moderate bottlenecking missing derived_from insufficient read depth, insufficient read length, control insufficient read depth ENCFF001XVC bed narrowPeak peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 1 398409 Barbara Wold, Caltech 331c9d780c025dac3d502638f8ac4fcf https://www.encodeproject.org/files/ENCFF001XVC/@@download/ENCFF001XVC.bed.gz mm9 released mild to moderate bottlenecking missing derived_from insufficient read depth, insufficient read length, control insufficient read depth ENCFF844RQT bam unfiltered alignments ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGB, ENCFF001IGC, ENCFF001IGD, ENCFF001IGE, ENCFF001IGG, ENCFF001IGH, ENCFF018NEO 1857300570 ENCODE Processing Pipeline f674cfc0e969522be45d584f2fb63477 https://www.encodeproject.org/files/ENCFF844RQT/@@download/ENCFF844RQT.bam mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF710XZJ bam alignments ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGB, ENCFF001IGC, ENCFF001IGD, ENCFF001IGE, ENCFF001IGG, ENCFF001IGH, ENCFF018NEO 316755738 ENCODE Processing Pipeline 3249c99cad3154cc425ca111812b8d2a https://www.encodeproject.org/files/ENCFF710XZJ/@@download/ENCFF710XZJ.bam mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF826GQH bigBed narrowPeak peaks and background as input for IDR ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF985BCG 9518193 ENCODE Processing Pipeline 4f0b1edd87d92552c3d06a5affcc9f26 https://www.encodeproject.org/files/ENCFF826GQH/@@download/ENCFF826GQH.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF891VZV bigWig fold change over control ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF710XZJ 120634471 ENCODE Processing Pipeline 17427f65c10ad602a7d5b5aa6903f18e https://www.encodeproject.org/files/ENCFF891VZV/@@download/ENCFF891VZV.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF985BCG bed narrowPeak peaks and background as input for IDR ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF710XZJ 4185119 ENCODE Processing Pipeline eff544824eaf7628c8779389cea52b8a https://www.encodeproject.org/files/ENCFF985BCG/@@download/ENCFF985BCG.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF223EFT bigWig signal p-value ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF122QLV, ENCFF710XZJ 169922805 ENCODE Processing Pipeline 47679ace53fe96a6541f0c8c0c3136de https://www.encodeproject.org/files/ENCFF223EFT/@@download/ENCFF223EFT.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF341XFN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF985BCG 206146 ENCODE Processing Pipeline 2c4aef759f20cf28ae69e13f8afdca42 https://www.encodeproject.org/files/ENCFF341XFN/@@download/ENCFF341XFN.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF939QGK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 ENCFF341XFN 417633 ENCODE Processing Pipeline 12b06911062c52fb0ef368275b2a44cb https://www.encodeproject.org/files/ENCFF939QGK/@@download/ENCFF939QGK.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF001HZZ bigBed narrowPeak peaks ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001XUL 501601 Barbara Wold, Caltech d295e512c31ff7927c49e9a47d1daa77 https://www.encodeproject.org/files/ENCFF001HZZ/@@download/ENCFF001HZZ.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF001IAD bigWig signal ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAG 163957727 Barbara Wold, Caltech e9e9536eb1d2c18bc9cb58f87308c017 https://www.encodeproject.org/files/ENCFF001IAD/@@download/ENCFF001IAD.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF001IAG bam alignments ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF001IBH 1648076481 Barbara Wold, Caltech 12f631c0b1f6fb27210173ad086c76cc https://www.encodeproject.org/files/ENCFF001IAG/@@download/ENCFF001IAG.bam mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF001IBH fastq reads ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 50 single-ended 1703772787 Barbara Wold, Caltech 3a2bc71cdbcfce57349200de8334d112 https://www.encodeproject.org/files/ENCFF001IBH/@@download/ENCFF001IBH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEY/ released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF001XUL bed narrowPeak peaks ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 1 ENCFF001IAG 292990 Barbara Wold, Caltech 0e9855d8e60471fe5a333fc87ce789b7 https://www.encodeproject.org/files/ENCFF001XUL/@@download/ENCFF001XUL.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF264ZLX bam unfiltered alignments ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBH, ENCFF018NEO 1722197527 ENCODE Processing Pipeline f99a26cd33c7a2a17149837d6a98ed29 https://www.encodeproject.org/files/ENCFF264ZLX/@@download/ENCFF264ZLX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF170OCZ bam alignments ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBH, ENCFF018NEO 1048927414 ENCODE Processing Pipeline 341228449eb00896923490ac8ee4ed3b https://www.encodeproject.org/files/ENCFF170OCZ/@@download/ENCFF170OCZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF944EDY bed narrowPeak peaks ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF170OCZ, ENCFF993HAY 845535 ENCODE Processing Pipeline 3bfa6d396928de47b23dfa3b0c7cd19c https://www.encodeproject.org/files/ENCFF944EDY/@@download/ENCFF944EDY.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF086PHA bigBed narrowPeak peaks ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF944EDY 2461665 ENCODE Processing Pipeline 6a85dea71d46f24ef6b07b170bb764f8 https://www.encodeproject.org/files/ENCFF086PHA/@@download/ENCFF086PHA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF503YQC bigWig signal p-value ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF170OCZ, ENCFF993HAY 330035183 ENCODE Processing Pipeline ca5149aa21e5ea04d183e3214153e388 https://www.encodeproject.org/files/ENCFF503YQC/@@download/ENCFF503YQC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF518CXM bigWig fold change over control ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF170OCZ, ENCFF993HAY 295075889 ENCODE Processing Pipeline 015b90a5db5e013b0d6e7182fe006bdd https://www.encodeproject.org/files/ENCFF518CXM/@@download/ENCFF518CXM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF614PQB bed narrowPeak stable peaks ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF944EDY 837051 ENCODE Processing Pipeline bbcb5c5809f696c4f98fd4afd7041da6 https://www.encodeproject.org/files/ENCFF614PQB/@@download/ENCFF614PQB.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF677MWE bigBed narrowPeak stable peaks ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 ENCFF614PQB 1905120 ENCODE Processing Pipeline a8f0e8197c4b7f5a233a2471816469fa https://www.encodeproject.org/files/ENCFF677MWE/@@download/ENCFF677MWE.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF880SIV fastq reads ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2236892016 Bing Ren, UCSD 16ef80e19f64faac0e2c6f9923d17c05 SRA:SRR3653012 https://www.encodeproject.org/files/ENCFF880SIV/@@download/ENCFF880SIV.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released mild to moderate bottlenecking, inconsistent platforms ENCFF943DLO fastq reads ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2611646882 Bing Ren, UCSD f76db3d9dd04dca8a37595c67e0468c7 SRA:SRR3653011 https://www.encodeproject.org/files/ENCFF943DLO/@@download/ENCFF943DLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released mild to moderate bottlenecking, inconsistent platforms ENCFF433WDT bam alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF943DLO 1975529857 ENCODE Processing Pipeline e0680e062fe07b885005492d8d7865a5 https://www.encodeproject.org/files/ENCFF433WDT/@@download/ENCFF433WDT.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF252OHP bam alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF880SIV 1646246774 ENCODE Processing Pipeline c91bc45867aa09fc0e425b4461816ddd https://www.encodeproject.org/files/ENCFF252OHP/@@download/ENCFF252OHP.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF340PRF bed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF433WDT, ENCFF493BXI 1241984 ENCODE Processing Pipeline cddfb6a37a342750dc4432abc56ad0c6 https://www.encodeproject.org/files/ENCFF340PRF/@@download/ENCFF340PRF.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF901PBV bigBed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF217QAY 2741783 ENCODE Processing Pipeline a53e9206460711103b822c377457b294 https://www.encodeproject.org/files/ENCFF901PBV/@@download/ENCFF901PBV.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF773HGJ bed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF252OHP, ENCFF330HOT, ENCFF433WDT, ENCFF493BXI 1828048 ENCODE Processing Pipeline 3349b0204629c7cf07fada57bd8fc237 https://www.encodeproject.org/files/ENCFF773HGJ/@@download/ENCFF773HGJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF627PCJ bigBed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF340PRF 2902242 ENCODE Processing Pipeline 5ad1219d85244b9b7a249373abba4e75 https://www.encodeproject.org/files/ENCFF627PCJ/@@download/ENCFF627PCJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF469YCR bigBed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF773HGJ 3989201 ENCODE Processing Pipeline edecef4b4bcb22ca0e880e8a56703624 https://www.encodeproject.org/files/ENCFF469YCR/@@download/ENCFF469YCR.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF217QAY bed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF252OHP, ENCFF493BXI 1142987 ENCODE Processing Pipeline 9e8db5a977a837e3139d54c79950c44c https://www.encodeproject.org/files/ENCFF217QAY/@@download/ENCFF217QAY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF154JRT bigWig signal p-value ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF433WDT, ENCFF493BXI 634154625 ENCODE Processing Pipeline 647234c1a809cad608606bdfe71b4255 https://www.encodeproject.org/files/ENCFF154JRT/@@download/ENCFF154JRT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF656DSA bigWig signal p-value ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF252OHP, ENCFF493BXI 529559460 ENCODE Processing Pipeline 8a3e0c3ce93eb5b5996dc0862d9addec https://www.encodeproject.org/files/ENCFF656DSA/@@download/ENCFF656DSA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF912EZI bigWig signal p-value ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF252OHP, ENCFF330HOT, ENCFF433WDT, ENCFF493BXI 845021526 ENCODE Processing Pipeline 0a6d9d4beb5bbc939e232842c9375a68 https://www.encodeproject.org/files/ENCFF912EZI/@@download/ENCFF912EZI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF265CNZ bigWig fold change over control ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF330HOT, ENCFF433WDT, ENCFF493BXI 789127628 ENCODE Processing Pipeline 40f67fd9553c869a5f86df9f1f78d0ec https://www.encodeproject.org/files/ENCFF265CNZ/@@download/ENCFF265CNZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF748PRW bigBed narrowPeak replicated peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF961GAJ 2318239 ENCODE Processing Pipeline 480ed84b07565314270da48bbdba2752 https://www.encodeproject.org/files/ENCFF748PRW/@@download/ENCFF748PRW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF961XDB bigWig fold change over control ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF252OHP, ENCFF330HOT, ENCFF433WDT, ENCFF493BXI 1131061129 ENCODE Processing Pipeline dcd6ce8c11b29c0167800606a508c0b1 https://www.encodeproject.org/files/ENCFF961XDB/@@download/ENCFF961XDB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF961GAJ bed narrowPeak replicated peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF217QAY, ENCFF340PRF, ENCFF773HGJ 959626 ENCODE Processing Pipeline 00a672a7a00fff26c21de58d40614c60 https://www.encodeproject.org/files/ENCFF961GAJ/@@download/ENCFF961GAJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF448EGJ bigWig fold change over control ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF252OHP, ENCFF493BXI 593240261 ENCODE Processing Pipeline 26d0a6bdd10640aeab3e3206d5b9945c https://www.encodeproject.org/files/ENCFF448EGJ/@@download/ENCFF448EGJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF593TFW bam unfiltered alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF880SIV 2604286269 ENCODE Processing Pipeline 7c5d8f94f87b8eb642881777d94961cc https://www.encodeproject.org/files/ENCFF593TFW/@@download/ENCFF593TFW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF367XBS bam unfiltered alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF943DLO 3049521763 ENCODE Processing Pipeline 9b7c28b62f6ec59ae595988c3d6bcfe9 https://www.encodeproject.org/files/ENCFF367XBS/@@download/ENCFF367XBS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF033LMW bam alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF943DLO 1975153571 ENCODE Processing Pipeline 94a0833e220efcaff2fb39e52765bf7d https://www.encodeproject.org/files/ENCFF033LMW/@@download/ENCFF033LMW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF423VHR bam alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF880SIV 1645947011 ENCODE Processing Pipeline 78c68c97baa899712e457958754ecaa7 https://www.encodeproject.org/files/ENCFF423VHR/@@download/ENCFF423VHR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF486VEI bed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF033LMW, ENCFF279URC 1245923 ENCODE Processing Pipeline 129829e279f2c975b4eaab7c75390b71 https://www.encodeproject.org/files/ENCFF486VEI/@@download/ENCFF486VEI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF960ICN bed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF423VHR, ENCFF893IOJ 1162369 ENCODE Processing Pipeline 5a93d349e898ee8b835417e8190a6658 https://www.encodeproject.org/files/ENCFF960ICN/@@download/ENCFF960ICN.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF579UNF bed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF033LMW, ENCFF279URC, ENCFF423VHR, ENCFF893IOJ 1968274 ENCODE Processing Pipeline 787ced675f544f44d3216739a3b42e8f https://www.encodeproject.org/files/ENCFF579UNF/@@download/ENCFF579UNF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF254LRX bigBed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF486VEI 2903570 ENCODE Processing Pipeline b2d7bb82d5353823e9ef6751b28c0736 https://www.encodeproject.org/files/ENCFF254LRX/@@download/ENCFF254LRX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF497BYN bigBed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF960ICN 2789272 ENCODE Processing Pipeline fc2ffa5b86f01e8f2861aabacb9c1510 https://www.encodeproject.org/files/ENCFF497BYN/@@download/ENCFF497BYN.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF361XCJ bigBed narrowPeak peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF579UNF 4287750 ENCODE Processing Pipeline eeeccce08142e50d48599d2fabb27860 https://www.encodeproject.org/files/ENCFF361XCJ/@@download/ENCFF361XCJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF009NZN bigWig signal p-value ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF033LMW, ENCFF279URC 727210831 ENCODE Processing Pipeline 5b0725d2f9a22664b8cd74a134e99b57 https://www.encodeproject.org/files/ENCFF009NZN/@@download/ENCFF009NZN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF271RFV bigWig signal p-value ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF423VHR, ENCFF893IOJ 536583652 ENCODE Processing Pipeline 50ffadeaa3210ee79c9ed3271017b28e https://www.encodeproject.org/files/ENCFF271RFV/@@download/ENCFF271RFV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF514HVL bigWig signal p-value ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF033LMW, ENCFF279URC, ENCFF423VHR, ENCFF893IOJ 1101588619 ENCODE Processing Pipeline f5f88a9132476102cf0c7507afcb1908 https://www.encodeproject.org/files/ENCFF514HVL/@@download/ENCFF514HVL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF679FFF bigWig fold change over control ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF033LMW, ENCFF279URC 717736866 ENCODE Processing Pipeline faeb1d85032854789633169a151f60f2 https://www.encodeproject.org/files/ENCFF679FFF/@@download/ENCFF679FFF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF749IKI bigWig fold change over control ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF423VHR, ENCFF893IOJ 629479027 ENCODE Processing Pipeline d3c20d7c70adf852b5442402519cef7b https://www.encodeproject.org/files/ENCFF749IKI/@@download/ENCFF749IKI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF582THV bigWig fold change over control ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF033LMW, ENCFF279URC, ENCFF423VHR, ENCFF893IOJ 1290298106 ENCODE Processing Pipeline 47a9ca127837446ebe3f872e2e619b50 https://www.encodeproject.org/files/ENCFF582THV/@@download/ENCFF582THV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF866KRC bed narrowPeak replicated peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF486VEI, ENCFF579UNF, ENCFF960ICN 1000223 ENCODE Processing Pipeline a7a94cedf2e7c5c3d0640c691295e867 https://www.encodeproject.org/files/ENCFF866KRC/@@download/ENCFF866KRC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF541QKD bigBed narrowPeak replicated peaks ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF866KRC 2373465 ENCODE Processing Pipeline 59137533d0d8de2c1790d0f7ac56a288 https://www.encodeproject.org/files/ENCFF541QKD/@@download/ENCFF541QKD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF637RQH fastq reads ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2145208379 Bing Ren, UCSD b4b825ac0194bf8cb8cd2a93807ff233 SRA:SRR3651789 https://www.encodeproject.org/files/ENCFF637RQH/@@download/ENCFF637RQH.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF324AEZ fastq reads ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2387451567 Bing Ren, UCSD b3dd7c1aa5e62f781244f7a4c59d9b74 SRA:SRR3651792 https://www.encodeproject.org/files/ENCFF324AEZ/@@download/ENCFF324AEZ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF101KOM bam alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF324AEZ, ENCFF806TVZ 2058687270 ENCODE Processing Pipeline 110c6debd0b7337ab01d2a47d335e98a https://www.encodeproject.org/files/ENCFF101KOM/@@download/ENCFF101KOM.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF069WCH bam alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF637RQH, ENCFF806TVZ 1843922066 ENCODE Processing Pipeline a618b33fdf092a30e013049497a10711 https://www.encodeproject.org/files/ENCFF069WCH/@@download/ENCFF069WCH.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF765PTY fastq reads ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 383068003 Bing Ren, UCSD 87f6ccff6baa4b0780e081ec1029bff7 SRA:SRR3651790 https://www.encodeproject.org/files/ENCFF765PTY/@@download/ENCFF765PTY.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF321TUD fastq reads ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 3 50 single-ended 502838566 Bing Ren, UCSD 666a9ff34243bf6570de4721c86803a1 SRA:SRR3651793 https://www.encodeproject.org/files/ENCFF321TUD/@@download/ENCFF321TUD.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF267KQD fastq reads ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 267224474 Bing Ren, UCSD 0325734737420f7740fa4c666d515c6b SRA:SRR3651794 https://www.encodeproject.org/files/ENCFF267KQD/@@download/ENCFF267KQD.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF165AZK fastq reads ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 3 50 single-ended 588323278 Bing Ren, UCSD 832d21aec26f0a48a43fe6182688cf45 SRA:SRR3651791 https://www.encodeproject.org/files/ENCFF165AZK/@@download/ENCFF165AZK.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF822ASN bam unfiltered alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018NEO, ENCFF165AZK, ENCFF637RQH, ENCFF765PTY 4099533768 ENCODE Processing Pipeline e517946012d4479e1c2daa21301a2c61 https://www.encodeproject.org/files/ENCFF822ASN/@@download/ENCFF822ASN.bam mm10 released sequencing runs labeled as technical replicates ENCFF417ZSV bam unfiltered alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF018NEO, ENCFF267KQD, ENCFF321TUD, ENCFF324AEZ 4076707614 ENCODE Processing Pipeline bd084fbb839ed4532013904a2b707c57 https://www.encodeproject.org/files/ENCFF417ZSV/@@download/ENCFF417ZSV.bam mm10 released sequencing runs labeled as technical replicates ENCFF814RAT bam alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF267KQD, ENCFF321TUD, ENCFF324AEZ 2857505279 ENCODE Processing Pipeline b0a5e41ffbd41e836dd696cefbe5655e https://www.encodeproject.org/files/ENCFF814RAT/@@download/ENCFF814RAT.bam mm10 released sequencing runs labeled as technical replicates ENCFF904KQI bam alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF165AZK, ENCFF637RQH, ENCFF765PTY 2855527847 ENCODE Processing Pipeline 5d01e5ae5c2e439dd41643fdd25712ca https://www.encodeproject.org/files/ENCFF904KQI/@@download/ENCFF904KQI.bam mm10 released sequencing runs labeled as technical replicates ENCFF455EJT bam alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF532FXB, ENCFF806TVZ, ENCFF905ZVU 2023533544 ENCODE Processing Pipeline 4a52d421200b749de1a3b7dbf2f9c0ba https://www.encodeproject.org/files/ENCFF455EJT/@@download/ENCFF455EJT.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF844LBC bam alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF418BAW, ENCFF806TVZ 1885128298 ENCODE Processing Pipeline 7d6d820a4d969fedb74b1dbf3a2a488b https://www.encodeproject.org/files/ENCFF844LBC/@@download/ENCFF844LBC.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF418BAW fastq reads ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2233286336 Bing Ren, UCSD 8b626c63aa8d282e10b5ed4ba76980aa SRA:SRR3652342 https://www.encodeproject.org/files/ENCFF418BAW/@@download/ENCFF418BAW.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF905ZVU fastq reads ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 949861939 Bing Ren, UCSD 61c8b0e565feef88ca09c5f9fa21e509 SRA:SRR3652344 https://www.encodeproject.org/files/ENCFF905ZVU/@@download/ENCFF905ZVU.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF532FXB fastq reads ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 1489127078 Bing Ren, UCSD da8ff5d7f19139b8f5254e6e2f1fbd35 SRA:SRR3652345 https://www.encodeproject.org/files/ENCFF532FXB/@@download/ENCFF532FXB.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF704GKQ fastq reads ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 3 50 single-ended 438370702 Bing Ren, UCSD f1e94d3a3ecd59e2fa14a6c1bbab1e84 SRA:SRR3652346 https://www.encodeproject.org/files/ENCFF704GKQ/@@download/ENCFF704GKQ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF943KNE fastq reads ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 900555911 Bing Ren, UCSD 927506ac84903de6285de4edf1081c15 SRA:SRR3652343 https://www.encodeproject.org/files/ENCFF943KNE/@@download/ENCFF943KNE.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF355HNE bam unfiltered alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018NEO, ENCFF532FXB, ENCFF704GKQ, ENCFF905ZVU 3665482724 ENCODE Processing Pipeline 883fcd79a153dfd749174cd539856214 https://www.encodeproject.org/files/ENCFF355HNE/@@download/ENCFF355HNE.bam mm10 released sequencing runs labeled as technical replicates ENCFF510BOE bam unfiltered alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF018NEO, ENCFF418BAW, ENCFF943KNE 4054779087 ENCODE Processing Pipeline 1b5c6ebec17da32951bf9d31b6ca2f42 https://www.encodeproject.org/files/ENCFF510BOE/@@download/ENCFF510BOE.bam mm10 released sequencing runs labeled as technical replicates ENCFF160VSE bam alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF532FXB, ENCFF704GKQ, ENCFF905ZVU 2494917020 ENCODE Processing Pipeline 0128fe6f94f6e4a18eefaf141bfda7c1 https://www.encodeproject.org/files/ENCFF160VSE/@@download/ENCFF160VSE.bam mm10 released sequencing runs labeled as technical replicates ENCFF048BGA bam alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF418BAW, ENCFF943KNE 2796238806 ENCODE Processing Pipeline eeacd3a5a38b58e53559bf0b7c7d7969 https://www.encodeproject.org/files/ENCFF048BGA/@@download/ENCFF048BGA.bam mm10 released sequencing runs labeled as technical replicates ENCFF667WML fastq reads ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 2294748513 Bing Ren, UCSD 0aa9e44d25d8e0d915991ff7bd7dbbeb SRA:SRR3652973 https://www.encodeproject.org/files/ENCFF667WML/@@download/ENCFF667WML.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF356FJF fastq reads ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 1762178971 Bing Ren, UCSD e285ede179f91a8a6dafb73bf7d420b8 SRA:SRR3652974 https://www.encodeproject.org/files/ENCFF356FJF/@@download/ENCFF356FJF.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF309JOG fastq reads ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 50 single-ended 737150159 Bing Ren, UCSD a57ea7a8626e35c68780300608c8ec7c SRA:SRR3652975 https://www.encodeproject.org/files/ENCFF309JOG/@@download/ENCFF309JOG.fastq.gz Illumina HiSeq 2500 /files/ENCFF333CMN/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF811RZS bam alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF309JOG, ENCFF356FJF, ENCFF806TVZ 1403606989 ENCODE Processing Pipeline 109ea3634db0072c256d8923c13b9027 https://www.encodeproject.org/files/ENCFF811RZS/@@download/ENCFF811RZS.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF029SDK bam alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF667WML, ENCFF806TVZ 1180316522 ENCODE Processing Pipeline 73a95d572352fbba5816d095e0509cc9 https://www.encodeproject.org/files/ENCFF029SDK/@@download/ENCFF029SDK.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF556YLB bed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF541RVC, ENCFF811RZS 545692 ENCODE Processing Pipeline 7e7fadb5232e768d645fa791597345ab https://www.encodeproject.org/files/ENCFF556YLB/@@download/ENCFF556YLB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF634KCN bed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF029SDK, ENCFF674GBO 957410 ENCODE Processing Pipeline d3bfe70c0c3a34176d0d633f1c5ea2cf https://www.encodeproject.org/files/ENCFF634KCN/@@download/ENCFF634KCN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF728HJN bed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF029SDK, ENCFF541RVC, ENCFF674GBO, ENCFF811RZS 1188675 ENCODE Processing Pipeline e0466b843460877653aea5fbcb41e519 https://www.encodeproject.org/files/ENCFF728HJN/@@download/ENCFF728HJN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF281SLP bigBed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF556YLB 1288540 ENCODE Processing Pipeline d19abb414974cb81364c051a3487b9db https://www.encodeproject.org/files/ENCFF281SLP/@@download/ENCFF281SLP.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF892IFZ bigBed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF634KCN 2012043 ENCODE Processing Pipeline a86090cd1aa65eed707faf3a64c69530 https://www.encodeproject.org/files/ENCFF892IFZ/@@download/ENCFF892IFZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF912AJX bigBed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF728HJN 3020779 ENCODE Processing Pipeline 30f6166daa3e866886afd8e1ee377b7e https://www.encodeproject.org/files/ENCFF912AJX/@@download/ENCFF912AJX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF722QPC bigWig signal p-value ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF541RVC, ENCFF811RZS 414480290 ENCODE Processing Pipeline 4850421cffd48d22b731befcc67123be https://www.encodeproject.org/files/ENCFF722QPC/@@download/ENCFF722QPC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF413UUP bigWig signal p-value ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF029SDK, ENCFF674GBO 454848259 ENCODE Processing Pipeline e3dd1c2a27aeb1dc0115624785b512cc https://www.encodeproject.org/files/ENCFF413UUP/@@download/ENCFF413UUP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF419ZUQ bigWig signal p-value ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF029SDK, ENCFF541RVC, ENCFF674GBO, ENCFF811RZS 901552032 ENCODE Processing Pipeline e7bca250dea176921aa887bd39558215 https://www.encodeproject.org/files/ENCFF419ZUQ/@@download/ENCFF419ZUQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF107CCI bigWig fold change over control ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF541RVC, ENCFF811RZS 528764201 ENCODE Processing Pipeline ead027affd8cee1ca1ab3395f9c940dd https://www.encodeproject.org/files/ENCFF107CCI/@@download/ENCFF107CCI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF625RDQ bigBed narrowPeak replicated peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF915AFH 1152990 ENCODE Processing Pipeline 06f189e25a837f670a559330bbf383e1 https://www.encodeproject.org/files/ENCFF625RDQ/@@download/ENCFF625RDQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF884BZM bigWig fold change over control ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF029SDK, ENCFF674GBO 453591205 ENCODE Processing Pipeline e79b3e60a45385f2889f4089179010e2 https://www.encodeproject.org/files/ENCFF884BZM/@@download/ENCFF884BZM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF980AZL bigWig fold change over control ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF029SDK, ENCFF541RVC, ENCFF674GBO, ENCFF811RZS 996839899 ENCODE Processing Pipeline f0d1e2101848fe136a0f6c36ead34d43 https://www.encodeproject.org/files/ENCFF980AZL/@@download/ENCFF980AZL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF915AFH bed narrowPeak replicated peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF556YLB, ENCFF634KCN, ENCFF728HJN 467217 ENCODE Processing Pipeline a8a526bcddaea3b9e638652f67d85f20 https://www.encodeproject.org/files/ENCFF915AFH/@@download/ENCFF915AFH.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF665ALC bam unfiltered alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF309JOG, ENCFF356FJF 3009079618 ENCODE Processing Pipeline c4ebf35939e6c16a84790c6fae564230 https://www.encodeproject.org/files/ENCFF665ALC/@@download/ENCFF665ALC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF659JPB bam unfiltered alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF667WML 2767897329 ENCODE Processing Pipeline a6665277d296887edead44f6038e0d60 https://www.encodeproject.org/files/ENCFF659JPB/@@download/ENCFF659JPB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF736GZB bam alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF309JOG, ENCFF356FJF 1402753939 ENCODE Processing Pipeline 3349aa4a48ee5076045863fd3d20085b https://www.encodeproject.org/files/ENCFF736GZB/@@download/ENCFF736GZB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF106FYX bam alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF667WML 1179515221 ENCODE Processing Pipeline bad325ea06c6b10b707e5cb2de7826ab https://www.encodeproject.org/files/ENCFF106FYX/@@download/ENCFF106FYX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF203YLK bed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF561HVM, ENCFF736GZB 996248 ENCODE Processing Pipeline 535700b7781938468fd20d45a2bd055a https://www.encodeproject.org/files/ENCFF203YLK/@@download/ENCFF203YLK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF287QWC bed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF106FYX, ENCFF962XXR 1062811 ENCODE Processing Pipeline 3ac616216601075f2693788d2c926c07 https://www.encodeproject.org/files/ENCFF287QWC/@@download/ENCFF287QWC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF968ZNN bed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF106FYX, ENCFF561HVM, ENCFF736GZB, ENCFF962XXR 1267403 ENCODE Processing Pipeline 41a194953ec497a492bb7eae3abc67b8 https://www.encodeproject.org/files/ENCFF968ZNN/@@download/ENCFF968ZNN.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF220HUS bigBed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF203YLK 2164543 ENCODE Processing Pipeline bd00012d2e26a9af0dfe43b8a8f7e989 https://www.encodeproject.org/files/ENCFF220HUS/@@download/ENCFF220HUS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF284OJM bigBed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF287QWC 2220713 ENCODE Processing Pipeline 2fe65fc2a707c090dd7c5c1c7dbca59f https://www.encodeproject.org/files/ENCFF284OJM/@@download/ENCFF284OJM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF271GQU bigBed narrowPeak peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF968ZNN 3212619 ENCODE Processing Pipeline fb45cb5dc250f2cc2722f9f677e9bbf8 https://www.encodeproject.org/files/ENCFF271GQU/@@download/ENCFF271GQU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF034UIB bigWig signal p-value ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF561HVM, ENCFF736GZB 633933109 ENCODE Processing Pipeline 1c0ffcf1f8c3c28466fbb76a772794df https://www.encodeproject.org/files/ENCFF034UIB/@@download/ENCFF034UIB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF319LBO bigWig signal p-value ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF106FYX, ENCFF962XXR 601578238 ENCODE Processing Pipeline 0f3a14928c234c040f7ea4ac794772cc https://www.encodeproject.org/files/ENCFF319LBO/@@download/ENCFF319LBO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF142IUT bigWig signal p-value ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF106FYX, ENCFF561HVM, ENCFF736GZB, ENCFF962XXR 1033191835 ENCODE Processing Pipeline 5381a3bfb1649a1aa71db60b9e237b39 https://www.encodeproject.org/files/ENCFF142IUT/@@download/ENCFF142IUT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF464SXU bigWig fold change over control ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF561HVM, ENCFF736GZB 614161240 ENCODE Processing Pipeline 7f72cf5de0b73f7148cf5deda2f1f42f https://www.encodeproject.org/files/ENCFF464SXU/@@download/ENCFF464SXU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF068MTW bigWig fold change over control ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF106FYX, ENCFF962XXR 561621742 ENCODE Processing Pipeline ca18c1150f85235f6b3c6a1b2edb7b1c https://www.encodeproject.org/files/ENCFF068MTW/@@download/ENCFF068MTW.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF878NXY bigWig fold change over control ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF106FYX, ENCFF561HVM, ENCFF736GZB, ENCFF962XXR 1133033165 ENCODE Processing Pipeline d8a5a7fb74f2362e0e292465d670e69b https://www.encodeproject.org/files/ENCFF878NXY/@@download/ENCFF878NXY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF052XZG bed narrowPeak replicated peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF203YLK, ENCFF287QWC, ENCFF968ZNN 523081 ENCODE Processing Pipeline 8787b357b7247a2fe1eb8dd624a6d4fb https://www.encodeproject.org/files/ENCFF052XZG/@@download/ENCFF052XZG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF272YNW bigBed narrowPeak replicated peaks ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF052XZG 1267772 ENCODE Processing Pipeline 74d8e8067da07b30c944f9c3d38127c9 https://www.encodeproject.org/files/ENCFF272YNW/@@download/ENCFF272YNW.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF057XGK fastq reads ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 1 50 single-ended 3299063744 Bing Ren, UCSD e094726146e294b45b8f7f9f4a3966ad SRA:SRR3653367 https://www.encodeproject.org/files/ENCFF057XGK/@@download/ENCFF057XGK.fastq.gz Illumina HiSeq 4000 /files/ENCFF088MXW/, /files/ENCFF129BRG/, /files/ENCFF195VIV/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF342LZF fastq reads ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 1 50 single-ended 1358583350 Bing Ren, UCSD a2826b4cab923285061e878e44e3b40d SRA:SRR3653368 https://www.encodeproject.org/files/ENCFF342LZF/@@download/ENCFF342LZF.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF446IQB fastq reads ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 2 50 single-ended 746267734 Bing Ren, UCSD e564384c5210e6bdf0ba23606929348c SRA:SRR3653369 https://www.encodeproject.org/files/ENCFF446IQB/@@download/ENCFF446IQB.fastq.gz Illumina HiSeq 4000 /files/ENCFF562YFW/, /files/ENCFF807YNF/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF143NIU bam unfiltered alignments ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF342LZF, ENCFF446IQB 2850978653 ENCODE Processing Pipeline 7f4e8f124f57cda5b53a17aec0855f35 https://www.encodeproject.org/files/ENCFF143NIU/@@download/ENCFF143NIU.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF910IVK bam unfiltered alignments ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF057XGK 4327937664 ENCODE Processing Pipeline 1748d83ba937b0b4a306281e74f34e31 https://www.encodeproject.org/files/ENCFF910IVK/@@download/ENCFF910IVK.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF223EIC bam alignments ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF342LZF, ENCFF446IQB 1453453641 ENCODE Processing Pipeline 96f6fdc3fe15aeddba67a5c53b53f0c1 https://www.encodeproject.org/files/ENCFF223EIC/@@download/ENCFF223EIC.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF592ZNN bam alignments ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF057XGK 2092615460 ENCODE Processing Pipeline f5810dd16fe649d49bf59b83a0fd4bf6 https://www.encodeproject.org/files/ENCFF592ZNN/@@download/ENCFF592ZNN.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF706MXU bed narrowPeak peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF223EIC, ENCFF270SEO, ENCFF592ZNN, ENCFF652BTE 1388735 ENCODE Processing Pipeline 2a8f3aa5fac139e8cea9d89a61339be0 https://www.encodeproject.org/files/ENCFF706MXU/@@download/ENCFF706MXU.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF080APZ bigBed narrowPeak peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF776PXA 1895927 ENCODE Processing Pipeline 3f0d6d1c176e459da4344eeb5320bd43 https://www.encodeproject.org/files/ENCFF080APZ/@@download/ENCFF080APZ.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF626JRR bigWig signal p-value ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF592ZNN, ENCFF652BTE 943567165 ENCODE Processing Pipeline 9a687f398d8f3b29257bda0358592ab8 https://www.encodeproject.org/files/ENCFF626JRR/@@download/ENCFF626JRR.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF888GMD bigBed narrowPeak replicated peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF724UQO 1309601 ENCODE Processing Pipeline 9618bb3ad3ca1c743fd79619e6c83f43 https://www.encodeproject.org/files/ENCFF888GMD/@@download/ENCFF888GMD.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF242YRF bed narrowPeak peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF223EIC, ENCFF652BTE 708035 ENCODE Processing Pipeline b1d47dff4e94273a3cfccb8c36a83953 https://www.encodeproject.org/files/ENCFF242YRF/@@download/ENCFF242YRF.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF776PXA bed narrowPeak peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF592ZNN, ENCFF652BTE 897758 ENCODE Processing Pipeline a74da81a53d4bf52cda6405c0103a2e2 https://www.encodeproject.org/files/ENCFF776PXA/@@download/ENCFF776PXA.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF217SUN bigBed narrowPeak peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF242YRF 1593456 ENCODE Processing Pipeline 40025bfe35eec7148b48c5d72f9e6f89 https://www.encodeproject.org/files/ENCFF217SUN/@@download/ENCFF217SUN.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF508DTQ bigBed narrowPeak peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF706MXU 3447245 ENCODE Processing Pipeline 8185d5fd9ce1ecb38603391cbfc41581 https://www.encodeproject.org/files/ENCFF508DTQ/@@download/ENCFF508DTQ.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF459UVP bigWig signal p-value ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF223EIC, ENCFF652BTE 581325413 ENCODE Processing Pipeline 13c987133047911e5be62110b752f343 https://www.encodeproject.org/files/ENCFF459UVP/@@download/ENCFF459UVP.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF551EYL bigWig signal p-value ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF223EIC, ENCFF270SEO, ENCFF592ZNN, ENCFF652BTE 1085064402 ENCODE Processing Pipeline 78dc2532f9913de002ab78ca5d1e8cfb https://www.encodeproject.org/files/ENCFF551EYL/@@download/ENCFF551EYL.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF922CIS bigWig fold change over control ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 ENCFF223EIC, ENCFF652BTE 668180267 ENCODE Processing Pipeline dc92bd94bd15dfdf42352b73bcc5d0b0 https://www.encodeproject.org/files/ENCFF922CIS/@@download/ENCFF922CIS.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF461NJJ bigWig fold change over control ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 ENCFF270SEO, ENCFF592ZNN, ENCFF652BTE 1046272437 ENCODE Processing Pipeline 5846d357644731eedd386d40fa7f42a9 https://www.encodeproject.org/files/ENCFF461NJJ/@@download/ENCFF461NJJ.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF063VTT bigWig fold change over control ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF223EIC, ENCFF270SEO, ENCFF592ZNN, ENCFF652BTE 1390003047 ENCODE Processing Pipeline f5f196540750c63c0bcec1a63885703b https://www.encodeproject.org/files/ENCFF063VTT/@@download/ENCFF063VTT.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF724UQO bed narrowPeak replicated peaks ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1, 2 ENCFF242YRF, ENCFF706MXU, ENCFF776PXA 545595 ENCODE Processing Pipeline 956113843f012332f3f08dc8d17c5b3e https://www.encodeproject.org/files/ENCFF724UQO/@@download/ENCFF724UQO.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF001NMV bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NMY 434867737 Michael Snyder, Stanford b4257095f00b3fef29c15a05874d10b5 https://www.encodeproject.org/files/ENCFF001NMV/@@download/ENCFF001NMV.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMW bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NNA 499685986 Michael Snyder, Stanford 39c004380f40f9931a236af0d0c4422b https://www.encodeproject.org/files/ENCFF001NMW/@@download/ENCFF001NMW.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMX bigBed narrowPeak peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIU 614405 Michael Snyder, Stanford 960fefaaf7c96e49889f23f2e6a2e088 https://www.encodeproject.org/files/ENCFF001NMX/@@download/ENCFF001NMX.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMY fastq reads ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 789170204 Michael Snyder, Stanford 6474968bb588670c94c5f0113a446b58 https://www.encodeproject.org/files/ENCFF001NMY/@@download/ENCFF001NMY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NNA fastq reads ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1053191117 Michael Snyder, Stanford f79ffa893be8f82d5bda0ab080e71c98 https://www.encodeproject.org/files/ENCFF001NNA/@@download/ENCFF001NNA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NNC bigWig signal ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMV, ENCFF001NMW 155057190 Michael Snyder, Stanford bab74e7933a4050bdf367070816ea3e1 https://www.encodeproject.org/files/ENCFF001NNC/@@download/ENCFF001NNC.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001YIU bed narrowPeak peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMV, ENCFF001NMW 223563 Michael Snyder, Stanford 80bce0fc5fc62c99185ea6f929ba62a4 https://www.encodeproject.org/files/ENCFF001YIU/@@download/ENCFF001YIU.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF212IDJ bam unfiltered alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNA, ENCFF018NEO 1113627334 ENCODE Processing Pipeline 3f49fd361432e0363d36c9d55a6d9dd0 https://www.encodeproject.org/files/ENCFF212IDJ/@@download/ENCFF212IDJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF465BKE bam unfiltered alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMY, ENCFF018NEO 862217209 ENCODE Processing Pipeline 2838d72ea8bffd0b52e0db063f50d890 https://www.encodeproject.org/files/ENCFF465BKE/@@download/ENCFF465BKE.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF434UMB bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMY, ENCFF018NEO 578305981 ENCODE Processing Pipeline 9a1ee1dce97f6ce5a9cfb63a4794099d https://www.encodeproject.org/files/ENCFF434UMB/@@download/ENCFF434UMB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF346RIK bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNA, ENCFF018NEO 675903221 ENCODE Processing Pipeline 826ee8b8ac6f5809558a9fe7edc18ef3 https://www.encodeproject.org/files/ENCFF346RIK/@@download/ENCFF346RIK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF404VOT bigWig signal p-value ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF434UMB 236356901 ENCODE Processing Pipeline 50cc99870fc514e615843e8f81ca36bb https://www.encodeproject.org/files/ENCFF404VOT/@@download/ENCFF404VOT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF860ULT bigWig fold change over control ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF346RIK 265596823 ENCODE Processing Pipeline 4ae23db74e4a6f97dd66b06403255524 https://www.encodeproject.org/files/ENCFF860ULT/@@download/ENCFF860ULT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF122IIZ bigWig signal p-value ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF346RIK 231437466 ENCODE Processing Pipeline 95ec0796f9e3f31911f3413a0a3e7989 https://www.encodeproject.org/files/ENCFF122IIZ/@@download/ENCFF122IIZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF348JOY bigWig signal p-value ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF346RIK, ENCFF434UMB 205757614 ENCODE Processing Pipeline 6735df58d63df2c628e4242cace81c02 https://www.encodeproject.org/files/ENCFF348JOY/@@download/ENCFF348JOY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF087DLY bigWig fold change over control ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF434UMB 253071733 ENCODE Processing Pipeline e8086ceb4cec4e845ebb9d6ef301b879 https://www.encodeproject.org/files/ENCFF087DLY/@@download/ENCFF087DLY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF133UFU bigWig fold change over control ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF346RIK, ENCFF434UMB 456654191 ENCODE Processing Pipeline 0e6ba9a0282ec94662366edf70b9788b https://www.encodeproject.org/files/ENCFF133UFU/@@download/ENCFF133UFU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF636ZRW bed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF434UMB 5030095 ENCODE Processing Pipeline 2c902b4b7eca81f431ade627d18ff88a https://www.encodeproject.org/files/ENCFF636ZRW/@@download/ENCFF636ZRW.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF931CZF bed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF346RIK 5257817 ENCODE Processing Pipeline c16c54e86899f065decd63330c01e561 https://www.encodeproject.org/files/ENCFF931CZF/@@download/ENCFF931CZF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF860QAI bed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF346RIK, ENCFF434UMB 5846332 ENCODE Processing Pipeline b282b9d437e8220651f473da85d790e6 https://www.encodeproject.org/files/ENCFF860QAI/@@download/ENCFF860QAI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF155VQX bigBed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF636ZRW 12641533 ENCODE Processing Pipeline 5d59013616879b3b448e02db41ab71a0 https://www.encodeproject.org/files/ENCFF155VQX/@@download/ENCFF155VQX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF286RTG bigBed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF931CZF 12724099 ENCODE Processing Pipeline 51ea2c9ba2a91fc9f099b36ea86e633e https://www.encodeproject.org/files/ENCFF286RTG/@@download/ENCFF286RTG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF735JUB bed narrowPeak conservative idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF636ZRW, ENCFF860QAI, ENCFF931CZF 316889 ENCODE Processing Pipeline 9cd7e75b2bab6faf21de63621c91b3c5 https://www.encodeproject.org/files/ENCFF735JUB/@@download/ENCFF735JUB.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF182KFL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF735JUB 714671 ENCODE Processing Pipeline bb32cb89d94cd6aae38436347c83b8bc https://www.encodeproject.org/files/ENCFF182KFL/@@download/ENCFF182KFL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF332AWP bigBed narrowPeak peaks and background as input for IDR ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF860QAI 12716126 ENCODE Processing Pipeline 29677b82bef8099fe4b8421bea1cfeb7 https://www.encodeproject.org/files/ENCFF332AWP/@@download/ENCFF332AWP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF184NQJ bed narrowPeak optimal idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF547MET, ENCFF636ZRW, ENCFF860QAI, ENCFF931CZF 324673 ENCODE Processing Pipeline de8404d8fe9504773c93c66f6f2cebe0 https://www.encodeproject.org/files/ENCFF184NQJ/@@download/ENCFF184NQJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF243MKI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF184NQJ 727636 ENCODE Processing Pipeline 0cfbbcdf97c068e6080c3017d5f072e0 https://www.encodeproject.org/files/ENCFF243MKI/@@download/ENCFF243MKI.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF275UYN bam alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF523IZM, ENCFF554IHG, ENCFF806TVZ 2350905097 ENCODE Processing Pipeline 6f22b64c48f8d630b70f4b4929fd72ca https://www.encodeproject.org/files/ENCFF275UYN/@@download/ENCFF275UYN.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF523IZM fastq reads ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 749088449 Bing Ren, UCSD e6e2a74ef63f208a223fee9dc262152f SRA:SRR3651584 https://www.encodeproject.org/files/ENCFF523IZM/@@download/ENCFF523IZM.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF554IHG fastq reads ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2028786848 Bing Ren, UCSD 72724d710dc692965d283638a91f0fe4 SRA:SRR3651585 https://www.encodeproject.org/files/ENCFF554IHG/@@download/ENCFF554IHG.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF983QZJ fastq reads ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2265845838 Bing Ren, UCSD eeaafc87ed00c7d13d9b12b630efa0fe SRA:SRR3651587 https://www.encodeproject.org/files/ENCFF983QZJ/@@download/ENCFF983QZJ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF301ZSF bam alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF983QZJ 1948855467 ENCODE Processing Pipeline 92841a8ae4f0b21b0d125e587b0a1af8 https://www.encodeproject.org/files/ENCFF301ZSF/@@download/ENCFF301ZSF.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF323RQH fastq reads ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 3 50 single-ended 361850994 Bing Ren, UCSD 800c76d64715d08cfd4faefad9904840 SRA:SRR3651586 https://www.encodeproject.org/files/ENCFF323RQH/@@download/ENCFF323RQH.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF037ZIA fastq reads ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 719662854 Bing Ren, UCSD 4f32149022fe9ebd405f497a691b2e9c SRA:SRR3651588 https://www.encodeproject.org/files/ENCFF037ZIA/@@download/ENCFF037ZIA.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF036NBH bam unfiltered alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF018NEO, ENCFF037ZIA, ENCFF983QZJ 3845492793 ENCODE Processing Pipeline be4003c45bce49a13c5859976a56985d https://www.encodeproject.org/files/ENCFF036NBH/@@download/ENCFF036NBH.bam mm10 released sequencing runs labeled as technical replicates ENCFF231HNB bam alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF037ZIA, ENCFF983QZJ 2697520035 ENCODE Processing Pipeline e94466402afb8eb0ee0b964dbbbbb241 https://www.encodeproject.org/files/ENCFF231HNB/@@download/ENCFF231HNB.bam mm10 released sequencing runs labeled as technical replicates ENCFF939LLN bam unfiltered alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018NEO, ENCFF323RQH, ENCFF523IZM, ENCFF554IHG 3958119712 ENCODE Processing Pipeline 31cdf9af763fd00520d890849dc4c029 https://www.encodeproject.org/files/ENCFF939LLN/@@download/ENCFF939LLN.bam mm10 released sequencing runs labeled as technical replicates ENCFF396QPU bam alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF323RQH, ENCFF523IZM, ENCFF554IHG 2749838403 ENCODE Processing Pipeline d7793e746925aca885a70d6e6e7a7eb7 https://www.encodeproject.org/files/ENCFF396QPU/@@download/ENCFF396QPU.bam mm10 released sequencing runs labeled as technical replicates ENCFF001KKA bam alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KKH 287774028 Bing Ren, UCSD 49391897aa575caacb85e7b8ea7cc194 https://www.encodeproject.org/files/ENCFF001KKA/@@download/ENCFF001KKA.bam mm9 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF001KKB bigBed broadPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE ENCFF001XXQ 1953982 Bing Ren, UCSD 1c63ef6a60b6d2a17ab4d38622907db0 https://www.encodeproject.org/files/ENCFF001KKB/@@download/ENCFF001KKB.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF001KKD bam alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KKT 673878078 Bing Ren, UCSD 3a25a611eac91ff6df5516a18c90f0ac https://www.encodeproject.org/files/ENCFF001KKD/@@download/ENCFF001KKD.bam mm9 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF001KKG bigWig signal ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 53644204 Bing Ren, UCSD 47f51840fa771eedc8964f40f515dde5 https://www.encodeproject.org/files/ENCFF001KKG/@@download/ENCFF001KKG.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF001KKH fastq reads ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 30 single-ended 261882564 Bing Ren, UCSD 9e0ea90c3f7eb4ec0d18bf442f45645b https://www.encodeproject.org/files/ENCFF001KKH/@@download/ENCFF001KKH.fastq.gz Illumina Genome Analyzer II /files/ENCFF044CWG/ archived low read length, inconsistent platforms, inconsistent control read length, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF001KKT fastq reads ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 735361975 Bing Ren, UCSD 62a43d75c00abaa4895248769b2c7dc7 https://www.encodeproject.org/files/ENCFF001KKT/@@download/ENCFF001KKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KLI/ archived low read length, inconsistent platforms, inconsistent control read length, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF001XXQ bed broadPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1344329 Bing Ren, UCSD cfa165d3ee340c978b9bf35ce2ef1d32 https://www.encodeproject.org/files/ENCFF001XXQ/@@download/ENCFF001XXQ.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF199UGW bam alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KKT, ENCFF806TVZ 14369984 ENCODE Processing Pipeline 70a64d9b7b39001962eb66c6fdbcfbba https://www.encodeproject.org/files/ENCFF199UGW/@@download/ENCFF199UGW.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF728HTM bam alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KKH, ENCFF806TVZ 222417438 ENCODE Processing Pipeline 198040336ba44946b6457c1e49e10f23 https://www.encodeproject.org/files/ENCFF728HTM/@@download/ENCFF728HTM.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF337VNI bam alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KKH, ENCFF018NEO 222386010 ENCODE Processing Pipeline 2b7bdcf88f37ad6613200f8a1edc8d41 https://www.encodeproject.org/files/ENCFF337VNI/@@download/ENCFF337VNI.bam mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF258LGK bam unfiltered alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KKH, ENCFF018NEO 309653178 ENCODE Processing Pipeline 4f00b7eb7c0e98ef9c4b8b3fcb9932b7 https://www.encodeproject.org/files/ENCFF258LGK/@@download/ENCFF258LGK.bam mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF793CTH bam alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KKT, ENCFF018NEO 14151853 ENCODE Processing Pipeline d672e50f3b9576c6aa17c313be03db53 https://www.encodeproject.org/files/ENCFF793CTH/@@download/ENCFF793CTH.bam mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF731IQI bam unfiltered alignments ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KKT, ENCFF018NEO 584333788 ENCODE Processing Pipeline 46a67785271e2b148f70c1b72080fb3f https://www.encodeproject.org/files/ENCFF731IQI/@@download/ENCFF731IQI.bam mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF630IPT bigWig signal p-value ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF337VNI, ENCFF420EJF, ENCFF688WNM 247651480 ENCODE Processing Pipeline ebb4b3a95e8fc155f42809b571eb20a3 https://www.encodeproject.org/files/ENCFF630IPT/@@download/ENCFF630IPT.bigWig mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF600CQY bigWig fold change over control ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF688WNM, ENCFF793CTH 3573815 ENCODE Processing Pipeline 858caaaf2f2a959584dc345827ea3e38 https://www.encodeproject.org/files/ENCFF600CQY/@@download/ENCFF600CQY.bigWig mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF594LQC bigWig fold change over control ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF337VNI, ENCFF420EJF, ENCFF688WNM, ENCFF793CTH 134152879 ENCODE Processing Pipeline 0fc3bf962019268993c259853f50dffa https://www.encodeproject.org/files/ENCFF594LQC/@@download/ENCFF594LQC.bigWig mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF804CII bigBed narrowPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF140LSV 5823474 ENCODE Processing Pipeline 7b0de06ba096620cfb6044789af10b05 https://www.encodeproject.org/files/ENCFF804CII/@@download/ENCFF804CII.bigBed mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF551OTN bed narrowPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF688WNM, ENCFF793CTH 3132 ENCODE Processing Pipeline d5197a1ac55bb3f61e79ebb88e636369 https://www.encodeproject.org/files/ENCFF551OTN/@@download/ENCFF551OTN.bed.gz mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF227OHH bigBed narrowPeak replicated peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF867RAB 5477906 ENCODE Processing Pipeline 5714e81faf54de403d20c5f729f22a8e https://www.encodeproject.org/files/ENCFF227OHH/@@download/ENCFF227OHH.bigBed mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF140LSV bed narrowPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF337VNI, ENCFF420EJF, ENCFF688WNM, ENCFF793CTH 2406540 ENCODE Processing Pipeline 2ec742e06e8f67d923aa188896e5a0a4 https://www.encodeproject.org/files/ENCFF140LSV/@@download/ENCFF140LSV.bed.gz mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF989TKL bigWig signal p-value ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF688WNM, ENCFF793CTH 250707822 ENCODE Processing Pipeline 958ec8629db14f7e75b0bd3208cfd971 https://www.encodeproject.org/files/ENCFF989TKL/@@download/ENCFF989TKL.bigWig mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF867RAB bed narrowPeak replicated peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF071TXO, ENCFF140LSV, ENCFF551OTN 2900473 ENCODE Processing Pipeline a1349b184029941fb93688f448f15cd4 https://www.encodeproject.org/files/ENCFF867RAB/@@download/ENCFF867RAB.bed.gz mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF685ONM bigBed narrowPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF071TXO 7276991 ENCODE Processing Pipeline 234d02d585cff55971c3e04f1aa219ea https://www.encodeproject.org/files/ENCFF685ONM/@@download/ENCFF685ONM.bigBed mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF071TXO bed narrowPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF337VNI, ENCFF420EJF, ENCFF688WNM 2975308 ENCODE Processing Pipeline 5401154c4f56162cbaa83fb0e48a4928 https://www.encodeproject.org/files/ENCFF071TXO/@@download/ENCFF071TXO.bed.gz mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF999VFG bigBed narrowPeak peaks ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF551OTN 29134 ENCODE Processing Pipeline b80869405b60e8e82e161f4569784355 https://www.encodeproject.org/files/ENCFF999VFG/@@download/ENCFF999VFG.bigBed mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF047WHO bigWig signal p-value ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF337VNI, ENCFF420EJF, ENCFF688WNM, ENCFF793CTH 272632348 ENCODE Processing Pipeline 05cb7b59009d3dbadd07626c7337d7da https://www.encodeproject.org/files/ENCFF047WHO/@@download/ENCFF047WHO.bigWig mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF718LGH bigWig fold change over control ENCSR000CCN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF337VNI, ENCFF420EJF, ENCFF688WNM 127218993 ENCODE Processing Pipeline 39a9345ecad010ea211eff5da56e6870 https://www.encodeproject.org/files/ENCFF718LGH/@@download/ENCFF718LGH.bigWig mm10 archived low read length, inconsistent platforms, mixed read lengths missing unfiltered alignments insufficient read depth, insufficient read length, control insufficient read depth extremely low read depth ENCFF001KCQ bam alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KCX 270521236 Bing Ren, UCSD 34d934581dc012c284b340c561bd96e6 https://www.encodeproject.org/files/ENCFF001KCQ/@@download/ENCFF001KCQ.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KCR bam alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KDF 758598385 Bing Ren, UCSD 7fd26565f46ab4e20a4fb65bacf1bf61 https://www.encodeproject.org/files/ENCFF001KCR/@@download/ENCFF001KCR.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KCW bigWig signal ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KCQ, ENCFF001KCR 70864819 Bing Ren, UCSD 7d8d27767269bf9744504513bc0a572b https://www.encodeproject.org/files/ENCFF001KCW/@@download/ENCFF001KCW.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KCX fastq reads ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 834323399 Bing Ren, UCSD dc8f7e82ceacdbf155aa648e65c9c6c0 https://www.encodeproject.org/files/ENCFF001KCX/@@download/ENCFF001KCX.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF001KDF fastq reads ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 869149643 Bing Ren, UCSD 6b9ce8a4d6c12977a3d8c3fb87a2360c https://www.encodeproject.org/files/ENCFF001KDF/@@download/ENCFF001KDF.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF141TNM bam unfiltered alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KCX, ENCFF806TVZ 878358169 J. Michael Cherry, Stanford 8cd0832283826915dd0270d86c1d7b4c https://www.encodeproject.org/files/ENCFF141TNM/@@download/ENCFF141TNM.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF480RTU bam unfiltered alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KDF, ENCFF806TVZ 988271503 J. Michael Cherry, Stanford 3862b4e5c0465dd49d950367e1294644 https://www.encodeproject.org/files/ENCFF480RTU/@@download/ENCFF480RTU.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF745XER bam alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCX, ENCFF018NEO 297932786 ENCODE Processing Pipeline 7f08d88a2b17bd40f56cd64093022d1b https://www.encodeproject.org/files/ENCFF745XER/@@download/ENCFF745XER.bam mm10 released low read length, low read depth insufficient read depth ENCFF555HBY bam alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KDF, ENCFF018NEO 657336959 ENCODE Processing Pipeline e560859f5a04f2d4e4d12cb910e39cb3 https://www.encodeproject.org/files/ENCFF555HBY/@@download/ENCFF555HBY.bam mm10 released low read length, low read depth insufficient read depth ENCFF722HYJ bam unfiltered alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KDF, ENCFF018NEO 988412917 ENCODE Processing Pipeline 10861a5040ef3f9bbd1bbc5f3b40a5b1 https://www.encodeproject.org/files/ENCFF722HYJ/@@download/ENCFF722HYJ.bam mm10 released low read length, low read depth insufficient read depth ENCFF832XHQ bam unfiltered alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCX, ENCFF018NEO 878728642 ENCODE Processing Pipeline d3797cfe6d04bcab1f652ab2891fa144 https://www.encodeproject.org/files/ENCFF832XHQ/@@download/ENCFF832XHQ.bam mm10 released low read length, low read depth insufficient read depth ENCFF001ZRN fastq reads ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 891848071 Bing Ren, UCSD 31b20e1bc7f4467f0472453dad2a226d SRA:SRR3652291 https://www.encodeproject.org/files/ENCFF001ZRN/@@download/ENCFF001ZRN.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001ZRO fastq reads ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 910131712 Bing Ren, UCSD 9b5ff403940474f581b9f24b5443c588 SRA:SRR3652290 https://www.encodeproject.org/files/ENCFF001ZRO/@@download/ENCFF001ZRO.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, mild to moderate bottlenecking, low read depth ENCFF959QFK bam alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRO, ENCFF806TVZ 660476184 ENCODE Processing Pipeline d5962aef470f22607c3d0897ac55e64b https://www.encodeproject.org/files/ENCFF959QFK/@@download/ENCFF959QFK.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF816UNE bam alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRN, ENCFF806TVZ 682513734 ENCODE Processing Pipeline e187e7886d701b4cb06823beafc00797 https://www.encodeproject.org/files/ENCFF816UNE/@@download/ENCFF816UNE.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF530FRS bed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF657TOI, ENCFF816UNE, ENCFF959QFK 748924 ENCODE Processing Pipeline 7b1dae68e5438fc3c7f96eb739336c43 https://www.encodeproject.org/files/ENCFF530FRS/@@download/ENCFF530FRS.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF381GHV bigBed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF369TMY 2458353 ENCODE Processing Pipeline 1effac30542bb37947680699d470283a https://www.encodeproject.org/files/ENCFF381GHV/@@download/ENCFF381GHV.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF622QAX bigWig signal p-value ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF959QFK 380261070 ENCODE Processing Pipeline 741a61afa6025a317c5dc07cc81a85f4 https://www.encodeproject.org/files/ENCFF622QAX/@@download/ENCFF622QAX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF380KCY bigBed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF561LEV 2460123 ENCODE Processing Pipeline 2ccdd37cf9713c28ac2f12bf16a1bc36 https://www.encodeproject.org/files/ENCFF380KCY/@@download/ENCFF380KCY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF055YTY bigBed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF530FRS 1910760 ENCODE Processing Pipeline ca8a91e44ae10ab8a588aeff68a8f433 https://www.encodeproject.org/files/ENCFF055YTY/@@download/ENCFF055YTY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF561LEV bed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF816UNE 959527 ENCODE Processing Pipeline 3493a4b14244b1af96de606cb3f731f7 https://www.encodeproject.org/files/ENCFF561LEV/@@download/ENCFF561LEV.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF369TMY bed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF959QFK 969312 ENCODE Processing Pipeline d1ce2107e0e346db8a2c9c2083d7d4a1 https://www.encodeproject.org/files/ENCFF369TMY/@@download/ENCFF369TMY.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF159ZMH bigWig signal p-value ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF816UNE 335875097 ENCODE Processing Pipeline ec1b171523101ad7e0d7e2a2b04982e1 https://www.encodeproject.org/files/ENCFF159ZMH/@@download/ENCFF159ZMH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF900ILJ bigWig signal p-value ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF657TOI, ENCFF816UNE, ENCFF959QFK 524260343 ENCODE Processing Pipeline c935aebe0cd33ed7b24e6fec547d95be https://www.encodeproject.org/files/ENCFF900ILJ/@@download/ENCFF900ILJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF968VKJ bigWig fold change over control ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF657TOI, ENCFF959QFK 342593323 ENCODE Processing Pipeline 669fcd2d5850ba6dcc2f916001abe552 https://www.encodeproject.org/files/ENCFF968VKJ/@@download/ENCFF968VKJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF869UAS bigWig fold change over control ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF657TOI, ENCFF816UNE 338995280 ENCODE Processing Pipeline fad8dd58d26eea32e4043c5e982f856d https://www.encodeproject.org/files/ENCFF869UAS/@@download/ENCFF869UAS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF742XEE bigWig fold change over control ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF657TOI, ENCFF816UNE, ENCFF959QFK 545903345 ENCODE Processing Pipeline aa3f6b741cb784a9c46bb87e47fff1b2 https://www.encodeproject.org/files/ENCFF742XEE/@@download/ENCFF742XEE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF357NCX bed narrowPeak replicated peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF369TMY, ENCFF530FRS, ENCFF561LEV 642269 ENCODE Processing Pipeline 3a7938619c2c50f6f568f64014fcca6a https://www.encodeproject.org/files/ENCFF357NCX/@@download/ENCFF357NCX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF598ASY bigBed narrowPeak replicated peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF357NCX 1393438 ENCODE Processing Pipeline 7a2d2796eff37e713da005ba1e84cf7c https://www.encodeproject.org/files/ENCFF598ASY/@@download/ENCFF598ASY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF453JSM bam unfiltered alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRN, ENCFF018NEO 1131312458 ENCODE Processing Pipeline bde78a3343346028a61e4f4eec0bb041 https://www.encodeproject.org/files/ENCFF453JSM/@@download/ENCFF453JSM.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF995IIQ bam unfiltered alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRO, ENCFF018NEO 1141458566 ENCODE Processing Pipeline 6caa7c5a798870ad9b08a228c9dea7e4 https://www.encodeproject.org/files/ENCFF995IIQ/@@download/ENCFF995IIQ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF944YMB bam alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRN, ENCFF018NEO 682336092 ENCODE Processing Pipeline fa249b65747898e1a165cc8cbbb4a64a https://www.encodeproject.org/files/ENCFF944YMB/@@download/ENCFF944YMB.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF265DHQ bam alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRO, ENCFF018NEO 660325502 ENCODE Processing Pipeline d882f903b293cf76ccd1b02415ee267c https://www.encodeproject.org/files/ENCFF265DHQ/@@download/ENCFF265DHQ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF416IIK bed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF265DHQ, ENCFF735XMC 969677 ENCODE Processing Pipeline 21492f85c045f5fb6fd8eb4a84db8539 https://www.encodeproject.org/files/ENCFF416IIK/@@download/ENCFF416IIK.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF859ICN bed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF265DHQ, ENCFF735XMC, ENCFF944YMB 749118 ENCODE Processing Pipeline a843fa8f7ba822bfa90d76955a8bac1d https://www.encodeproject.org/files/ENCFF859ICN/@@download/ENCFF859ICN.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF859UFO bed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF735XMC, ENCFF944YMB 959860 ENCODE Processing Pipeline 793c17e08bc3c4841496b422614dac90 https://www.encodeproject.org/files/ENCFF859UFO/@@download/ENCFF859UFO.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF210OZF bigBed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416IIK 2459507 ENCODE Processing Pipeline eef0ad566d54bec59c2fe3496d1c85cf https://www.encodeproject.org/files/ENCFF210OZF/@@download/ENCFF210OZF.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF435YMW bigBed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF859UFO 2459833 ENCODE Processing Pipeline 186d5481b6a109d9162952ef2ed12e92 https://www.encodeproject.org/files/ENCFF435YMW/@@download/ENCFF435YMW.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF259DLV bigBed narrowPeak peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF859ICN 1912471 ENCODE Processing Pipeline 49c3aba116bba039e294ad814dfa0014 https://www.encodeproject.org/files/ENCFF259DLV/@@download/ENCFF259DLV.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF559BZQ bigWig signal p-value ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF265DHQ, ENCFF735XMC 337320006 ENCODE Processing Pipeline e47d9e624f5f889c72e0b8ef90cc2935 https://www.encodeproject.org/files/ENCFF559BZQ/@@download/ENCFF559BZQ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF605ATC bigWig signal p-value ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF735XMC, ENCFF944YMB 351062787 ENCODE Processing Pipeline 6e40b51104d851ce8d8d33a26c066142 https://www.encodeproject.org/files/ENCFF605ATC/@@download/ENCFF605ATC.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF161PJS bigWig signal p-value ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF265DHQ, ENCFF735XMC, ENCFF944YMB 519482238 ENCODE Processing Pipeline 9e8508b3f1a7b0d6298aca82d65df02d https://www.encodeproject.org/files/ENCFF161PJS/@@download/ENCFF161PJS.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF209DVH bigWig fold change over control ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF265DHQ, ENCFF735XMC 342430387 ENCODE Processing Pipeline 3f195677aa6e5b8ed09b4f0f6ef32862 https://www.encodeproject.org/files/ENCFF209DVH/@@download/ENCFF209DVH.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF173PFZ bigWig fold change over control ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF735XMC, ENCFF944YMB 338708940 ENCODE Processing Pipeline faaa389a3d91009a9522341807ed4157 https://www.encodeproject.org/files/ENCFF173PFZ/@@download/ENCFF173PFZ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF422NJA bigWig fold change over control ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF265DHQ, ENCFF735XMC, ENCFF944YMB 544364308 ENCODE Processing Pipeline 39b9cb2945a5f9b9f3b52ddfdf07c28a https://www.encodeproject.org/files/ENCFF422NJA/@@download/ENCFF422NJA.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF956JDU bed narrowPeak replicated peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF416IIK, ENCFF859ICN, ENCFF859UFO 645850 ENCODE Processing Pipeline 85f133745f9245e09adb2ae69a6485aa https://www.encodeproject.org/files/ENCFF956JDU/@@download/ENCFF956JDU.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF855CZG bigBed narrowPeak replicated peaks ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF956JDU 1402525 ENCODE Processing Pipeline 6ec1154fc16ecca28187c9f1c8eb05fd https://www.encodeproject.org/files/ENCFF855CZG/@@download/ENCFF855CZG.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF196OLK fastq reads ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3110736604 Bing Ren, UCSD 27ce46517a9b0345679b62cd28942958 SRA:SRR3653254 https://www.encodeproject.org/files/ENCFF196OLK/@@download/ENCFF196OLK.fastq.gz Illumina HiSeq 2000 /files/ENCFF324AEZ/ released inconsistent platforms ENCFF454VHJ fastq reads ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3001653306 Bing Ren, UCSD 6fc264946226b13c2729a9969c722be3 SRA:SRR3653255 https://www.encodeproject.org/files/ENCFF454VHJ/@@download/ENCFF454VHJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF637RQH/ released inconsistent platforms ENCFF033FTQ bam alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF196OLK, ENCFF806TVZ 2820909814 ENCODE Processing Pipeline 87db2cb33a57eaebe6923afa5bbefdbf https://www.encodeproject.org/files/ENCFF033FTQ/@@download/ENCFF033FTQ.bam mm10-minimal archived inconsistent platforms ENCFF912RCT bam alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF454VHJ, ENCFF806TVZ 2774504220 ENCODE Processing Pipeline 8ffc9873d770d46edf1bfa681a4942b5 https://www.encodeproject.org/files/ENCFF912RCT/@@download/ENCFF912RCT.bam mm10-minimal archived inconsistent platforms ENCFF849SLQ bed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF033FTQ, ENCFF069WCH, ENCFF101KOM, ENCFF912RCT 2967865 ENCODE Processing Pipeline b1be5e22bb36e68fa6377642bf9ea42c https://www.encodeproject.org/files/ENCFF849SLQ/@@download/ENCFF849SLQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF371AMD bed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF033FTQ, ENCFF069WCH, ENCFF101KOM 2955108 ENCODE Processing Pipeline 7deea4bde7e0b00d15e1c6a95abab480 https://www.encodeproject.org/files/ENCFF371AMD/@@download/ENCFF371AMD.bed.gz mm10-minimal archived inconsistent platforms ENCFF885KYZ bed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF912RCT 3291662 ENCODE Processing Pipeline b6303115eb1b54bc06e67c989dea86a5 https://www.encodeproject.org/files/ENCFF885KYZ/@@download/ENCFF885KYZ.bed.gz mm10-minimal archived inconsistent platforms ENCFF626MUA bigBed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF371AMD 7793525 ENCODE Processing Pipeline 3b19e0a004fe8719131f61c52e8f5d8a https://www.encodeproject.org/files/ENCFF626MUA/@@download/ENCFF626MUA.bigBed mm10-minimal archived inconsistent platforms ENCFF917ABV bigBed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF885KYZ 8585423 ENCODE Processing Pipeline eca0b7a6eb77620616e70e0df7aec33e https://www.encodeproject.org/files/ENCFF917ABV/@@download/ENCFF917ABV.bigBed mm10-minimal archived inconsistent platforms ENCFF281WXF bigBed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF849SLQ 7777158 ENCODE Processing Pipeline 0a56c4925fa99e6261d98d26b26ed6db https://www.encodeproject.org/files/ENCFF281WXF/@@download/ENCFF281WXF.bigBed mm10-minimal archived inconsistent platforms ENCFF221GYM bigWig signal p-value ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF912RCT 847190658 ENCODE Processing Pipeline 79a593d1f667454ba975490aa090ef28 https://www.encodeproject.org/files/ENCFF221GYM/@@download/ENCFF221GYM.bigWig mm10-minimal archived inconsistent platforms ENCFF612OZN bigWig signal p-value ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF033FTQ, ENCFF069WCH, ENCFF101KOM 769236478 ENCODE Processing Pipeline 51374a85d7134b829d20bed5ccd2c28a https://www.encodeproject.org/files/ENCFF612OZN/@@download/ENCFF612OZN.bigWig mm10-minimal archived inconsistent platforms ENCFF439VFB bigWig signal p-value ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF033FTQ, ENCFF069WCH, ENCFF101KOM, ENCFF912RCT 1099178151 ENCODE Processing Pipeline 2674990f15a2fa318f404199c62fc948 https://www.encodeproject.org/files/ENCFF439VFB/@@download/ENCFF439VFB.bigWig mm10-minimal archived inconsistent platforms ENCFF399NDX bigWig fold change over control ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF912RCT 983262358 ENCODE Processing Pipeline 674c71832103b133e54da90ef2d7481d https://www.encodeproject.org/files/ENCFF399NDX/@@download/ENCFF399NDX.bigWig mm10-minimal archived inconsistent platforms ENCFF684GJS bigWig fold change over control ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF033FTQ, ENCFF069WCH, ENCFF101KOM 983788049 ENCODE Processing Pipeline 8ec57c3fdfa211633c1a30b89267c72f https://www.encodeproject.org/files/ENCFF684GJS/@@download/ENCFF684GJS.bigWig mm10-minimal archived inconsistent platforms ENCFF816PTP bed narrowPeak replicated peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF371AMD, ENCFF849SLQ, ENCFF885KYZ 3002849 ENCODE Processing Pipeline a75b8aab6abf5478bc05db9134ae29d5 https://www.encodeproject.org/files/ENCFF816PTP/@@download/ENCFF816PTP.bed.gz mm10-minimal archived inconsistent platforms ENCFF525XQX bigBed narrowPeak replicated peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF816PTP 6222378 ENCODE Processing Pipeline 2bc713a3f55ff5524b858916ac1b3593 https://www.encodeproject.org/files/ENCFF525XQX/@@download/ENCFF525XQX.bigBed mm10-minimal archived inconsistent platforms ENCFF199FHO bigWig fold change over control ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF033FTQ, ENCFF069WCH, ENCFF101KOM, ENCFF912RCT 1484055591 ENCODE Processing Pipeline 6db2ac6db1c12861c403bbf7ec7fd5f8 https://www.encodeproject.org/files/ENCFF199FHO/@@download/ENCFF199FHO.bigWig mm10-minimal archived inconsistent platforms ENCFF028XUT bam unfiltered alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF196OLK 3685840053 ENCODE Processing Pipeline dbd2dccb54e93c5ed4099df10cce1c4b https://www.encodeproject.org/files/ENCFF028XUT/@@download/ENCFF028XUT.bam mm10 released inconsistent platforms ENCFF767KRK bam unfiltered alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF454VHJ 3535291492 ENCODE Processing Pipeline 1878fd5725239359c568e44b947246d9 https://www.encodeproject.org/files/ENCFF767KRK/@@download/ENCFF767KRK.bam mm10 released inconsistent platforms ENCFF039PYR bam alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF196OLK 2820383871 ENCODE Processing Pipeline d0645af8e486ddd6e91bfec8cdb13ddb https://www.encodeproject.org/files/ENCFF039PYR/@@download/ENCFF039PYR.bam mm10 released inconsistent platforms ENCFF667UPO bam alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF454VHJ 2774025779 ENCODE Processing Pipeline 3205850e53e7f0ff1d836ee77341af3d https://www.encodeproject.org/files/ENCFF667UPO/@@download/ENCFF667UPO.bam mm10 released inconsistent platforms ENCFF121PQX bed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF667UPO, ENCFF904KQI 3524683 ENCODE Processing Pipeline b98e49978979d2ca37d1d78b057f4b90 https://www.encodeproject.org/files/ENCFF121PQX/@@download/ENCFF121PQX.bed.gz mm10 released inconsistent platforms ENCFF187PXC bed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF039PYR, ENCFF814RAT 2911156 ENCODE Processing Pipeline 1742b7b6bd94a2f6fca4440bf58c2e8d https://www.encodeproject.org/files/ENCFF187PXC/@@download/ENCFF187PXC.bed.gz mm10 released inconsistent platforms ENCFF933XED bed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF039PYR, ENCFF667UPO, ENCFF814RAT, ENCFF904KQI 3995746 ENCODE Processing Pipeline e516ace53ead04f6ae67d0616afd110b https://www.encodeproject.org/files/ENCFF933XED/@@download/ENCFF933XED.bed.gz mm10 released inconsistent platforms ENCFF910JWH bigBed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF121PQX 9140894 ENCODE Processing Pipeline b2f21c84e563d71114b31e19d0eed8bc https://www.encodeproject.org/files/ENCFF910JWH/@@download/ENCFF910JWH.bigBed mm10 released inconsistent platforms ENCFF481QAE bigBed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF933XED 10391910 ENCODE Processing Pipeline 6716fa8f0976f716909ca37bce728fe7 https://www.encodeproject.org/files/ENCFF481QAE/@@download/ENCFF481QAE.bigBed mm10 released inconsistent platforms ENCFF158BMP bigBed narrowPeak peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF187PXC 7691131 ENCODE Processing Pipeline bfc4143fd17f2574c5788a6f2becc3e5 https://www.encodeproject.org/files/ENCFF158BMP/@@download/ENCFF158BMP.bigBed mm10 released inconsistent platforms ENCFF980IRS bigWig signal p-value ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF667UPO, ENCFF904KQI 899698249 ENCODE Processing Pipeline 83f089c376f58797299a065a426e3502 https://www.encodeproject.org/files/ENCFF980IRS/@@download/ENCFF980IRS.bigWig mm10 released inconsistent platforms ENCFF852RGP bigWig signal p-value ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF039PYR, ENCFF814RAT 795057134 ENCODE Processing Pipeline ce7e5a844b9c09536ac12daa59256636 https://www.encodeproject.org/files/ENCFF852RGP/@@download/ENCFF852RGP.bigWig mm10 released inconsistent platforms ENCFF747VTN bigWig signal p-value ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF039PYR, ENCFF667UPO, ENCFF814RAT, ENCFF904KQI 1230476228 ENCODE Processing Pipeline 0432c690cab672e85825af487f2d4ed0 https://www.encodeproject.org/files/ENCFF747VTN/@@download/ENCFF747VTN.bigWig mm10 released inconsistent platforms ENCFF533DAO bigWig fold change over control ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF667UPO, ENCFF904KQI 915825427 ENCODE Processing Pipeline 75da0d172b54ac9d4a760da0b784b5aa https://www.encodeproject.org/files/ENCFF533DAO/@@download/ENCFF533DAO.bigWig mm10 released inconsistent platforms ENCFF153KNF bigWig fold change over control ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF039PYR, ENCFF814RAT 918537204 ENCODE Processing Pipeline b186270bb03dde13b55c67c67b9b6523 https://www.encodeproject.org/files/ENCFF153KNF/@@download/ENCFF153KNF.bigWig mm10 released inconsistent platforms ENCFF254FBD bigWig fold change over control ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF039PYR, ENCFF667UPO, ENCFF814RAT, ENCFF904KQI 1670297821 ENCODE Processing Pipeline d6ba01ddd01660ba800c71363fe4727e https://www.encodeproject.org/files/ENCFF254FBD/@@download/ENCFF254FBD.bigWig mm10 released inconsistent platforms ENCFF327TUT bed narrowPeak replicated peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF121PQX, ENCFF187PXC, ENCFF933XED 3118000 ENCODE Processing Pipeline bd90152064bfe7c8437cea6ed5965b2b https://www.encodeproject.org/files/ENCFF327TUT/@@download/ENCFF327TUT.bed.gz mm10 released inconsistent platforms ENCFF834XKA bigBed narrowPeak replicated peaks ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF327TUT 6322613 ENCODE Processing Pipeline f2eb7b95d61c416d1405517b766170b7 https://www.encodeproject.org/files/ENCFF834XKA/@@download/ENCFF834XKA.bigBed mm10 released inconsistent platforms ENCFF200EJF bam alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF527PWY, ENCFF806TVZ 1715294866 ENCODE Processing Pipeline 12921c222169ce7d4de18e4d4c15a501 https://www.encodeproject.org/files/ENCFF200EJF/@@download/ENCFF200EJF.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF527PWY fastq reads ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2515973580 Bing Ren, UCSD 2549740875145f9d35b48386653f12b1 SRA:SRR3652053 https://www.encodeproject.org/files/ENCFF527PWY/@@download/ENCFF527PWY.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF864XTW fastq reads ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2199729018 Bing Ren, UCSD a37786234380b33fc6b80e75b4648091 SRA:SRR3652052 https://www.encodeproject.org/files/ENCFF864XTW/@@download/ENCFF864XTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF109OBO bam alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF864XTW 1555236802 ENCODE Processing Pipeline b743902c98bac285887e72e502fc18b4 https://www.encodeproject.org/files/ENCFF109OBO/@@download/ENCFF109OBO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF984LGR bed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF109OBO, ENCFF170XAR, ENCFF200EJF, ENCFF269MZC 617680 ENCODE Processing Pipeline 563b6704fa55de519e62c1ba5e856e28 https://www.encodeproject.org/files/ENCFF984LGR/@@download/ENCFF984LGR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF819GUF bigBed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF967VAR 1874535 ENCODE Processing Pipeline abd62514ae2ce5567b0dfab86796c0e5 https://www.encodeproject.org/files/ENCFF819GUF/@@download/ENCFF819GUF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF695UXT bigWig signal p-value ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF200EJF 496171074 ENCODE Processing Pipeline 68bafe4efc77460215f8b6c043b90021 https://www.encodeproject.org/files/ENCFF695UXT/@@download/ENCFF695UXT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF662FMU bed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF109OBO, ENCFF269MZC 550928 ENCODE Processing Pipeline b6d7ae908f62dc458b932169844e7ec2 https://www.encodeproject.org/files/ENCFF662FMU/@@download/ENCFF662FMU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF675WOQ bigBed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF662FMU 1819861 ENCODE Processing Pipeline d5b64c4affab01e6f8500ce00c3809c3 https://www.encodeproject.org/files/ENCFF675WOQ/@@download/ENCFF675WOQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF319HNP bigBed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF984LGR 1976798 ENCODE Processing Pipeline 6bd2b673408b13138372ec7c0e61fa33 https://www.encodeproject.org/files/ENCFF319HNP/@@download/ENCFF319HNP.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF458XUI bigWig signal p-value ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF109OBO, ENCFF170XAR, ENCFF200EJF, ENCFF269MZC 779113248 ENCODE Processing Pipeline f0ebee71c93116049a2f1b8ef63d70d0 https://www.encodeproject.org/files/ENCFF458XUI/@@download/ENCFF458XUI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF820ZLQ bed narrowPeak replicated peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF662FMU, ENCFF967VAR, ENCFF984LGR 671974 ENCODE Processing Pipeline dd314d6ac9dd1e0fa6eed82ee97ea1fe https://www.encodeproject.org/files/ENCFF820ZLQ/@@download/ENCFF820ZLQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF967VAR bed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF200EJF 572422 ENCODE Processing Pipeline c0f7ac895be7fa091eee591b6d756b10 https://www.encodeproject.org/files/ENCFF967VAR/@@download/ENCFF967VAR.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF670NVZ bigWig fold change over control ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF109OBO, ENCFF170XAR, ENCFF200EJF, ENCFF269MZC 876526687 ENCODE Processing Pipeline 717a0f29e328effbf8d47509339052e9 https://www.encodeproject.org/files/ENCFF670NVZ/@@download/ENCFF670NVZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF065CHH bigBed narrowPeak replicated peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF820ZLQ 1644711 ENCODE Processing Pipeline acafb08edd23a08b2a8dd17d45cd12d4 https://www.encodeproject.org/files/ENCFF065CHH/@@download/ENCFF065CHH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF025FUD bigWig signal p-value ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF109OBO, ENCFF269MZC 483019466 ENCODE Processing Pipeline ad4867b35c80b6437ba9c341ee17a731 https://www.encodeproject.org/files/ENCFF025FUD/@@download/ENCFF025FUD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF986MMJ bigWig fold change over control ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF170XAR, ENCFF200EJF 493881139 ENCODE Processing Pipeline 12b9e4a15f24ca43bac9d3541ce99a52 https://www.encodeproject.org/files/ENCFF986MMJ/@@download/ENCFF986MMJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF695RST bigWig fold change over control ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF109OBO, ENCFF269MZC 464521480 ENCODE Processing Pipeline 95cf4c8aff921d49f0036dd73fc1c412 https://www.encodeproject.org/files/ENCFF695RST/@@download/ENCFF695RST.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF886BSZ bam unfiltered alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF527PWY 2751849257 ENCODE Processing Pipeline 8d836cf0bcaeb10aa4702c50bf4195bf https://www.encodeproject.org/files/ENCFF886BSZ/@@download/ENCFF886BSZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF698IOZ bam unfiltered alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF864XTW 2410936522 ENCODE Processing Pipeline a38ab4cae4b39b08fd17b150c69df2ce https://www.encodeproject.org/files/ENCFF698IOZ/@@download/ENCFF698IOZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF646NUH bam alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF864XTW 1554938633 ENCODE Processing Pipeline ce4a3e807c596c339acb2d46e8c50914 https://www.encodeproject.org/files/ENCFF646NUH/@@download/ENCFF646NUH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF131ZRV bam alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF527PWY 1714994978 ENCODE Processing Pipeline ba11d3fb3b302836736e8f0e1e4a52eb https://www.encodeproject.org/files/ENCFF131ZRV/@@download/ENCFF131ZRV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF655GLJ bed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF646NUH 556387 ENCODE Processing Pipeline cf39b91b2af58caa2f3142f2adc81005 https://www.encodeproject.org/files/ENCFF655GLJ/@@download/ENCFF655GLJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF538JMU bed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF131ZRV, ENCFF876QJH 586047 ENCODE Processing Pipeline 9e42698dc13599c7688f8c07a055b0db https://www.encodeproject.org/files/ENCFF538JMU/@@download/ENCFF538JMU.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF566ZRM bed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF131ZRV, ENCFF200JPL, ENCFF646NUH, ENCFF876QJH 619207 ENCODE Processing Pipeline ecf879951d8a2682003707bfea84f360 https://www.encodeproject.org/files/ENCFF566ZRM/@@download/ENCFF566ZRM.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF588KMI bigBed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF538JMU 1897917 ENCODE Processing Pipeline c672f204a3f856b262d02268efc319a0 https://www.encodeproject.org/files/ENCFF588KMI/@@download/ENCFF588KMI.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF733SIZ bigBed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF655GLJ 1831848 ENCODE Processing Pipeline c2848ad8d056949b771e246b2447c608 https://www.encodeproject.org/files/ENCFF733SIZ/@@download/ENCFF733SIZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF333WZO bigBed narrowPeak peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF566ZRM 1974539 ENCODE Processing Pipeline d60bf6b3a32c6943b8d46e4fe7177c70 https://www.encodeproject.org/files/ENCFF333WZO/@@download/ENCFF333WZO.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF715DZB bigWig signal p-value ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF131ZRV, ENCFF876QJH 515140498 ENCODE Processing Pipeline ddd3df9b1f6a34dc2342bcb97adbc101 https://www.encodeproject.org/files/ENCFF715DZB/@@download/ENCFF715DZB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF743POB bigWig signal p-value ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF646NUH 576730676 ENCODE Processing Pipeline 96ab2f3414aec6853fb1017e85d42d3c https://www.encodeproject.org/files/ENCFF743POB/@@download/ENCFF743POB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF487EJM bigWig signal p-value ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF131ZRV, ENCFF200JPL, ENCFF646NUH, ENCFF876QJH 776728804 ENCODE Processing Pipeline 99d6d5eb8857a3b47291db1fdd461d06 https://www.encodeproject.org/files/ENCFF487EJM/@@download/ENCFF487EJM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF402CFK bigWig fold change over control ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF131ZRV, ENCFF876QJH 539928938 ENCODE Processing Pipeline 93355beca9ff4d24ca9ed5ca5df95243 https://www.encodeproject.org/files/ENCFF402CFK/@@download/ENCFF402CFK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF842VIU bigWig fold change over control ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF200JPL, ENCFF646NUH 516543878 ENCODE Processing Pipeline 27309ef62e4d340ab1bcfaa5b0e709b5 https://www.encodeproject.org/files/ENCFF842VIU/@@download/ENCFF842VIU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF856ZXY bigWig fold change over control ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF131ZRV, ENCFF200JPL, ENCFF646NUH, ENCFF876QJH 978650605 ENCODE Processing Pipeline d341c46eed7aee5e26ad0b08870662da https://www.encodeproject.org/files/ENCFF856ZXY/@@download/ENCFF856ZXY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF278YZX bed narrowPeak replicated peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF538JMU, ENCFF566ZRM, ENCFF655GLJ 681574 ENCODE Processing Pipeline fb2566b3c3fe77609b6249d33ed5ab51 https://www.encodeproject.org/files/ENCFF278YZX/@@download/ENCFF278YZX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF922EVS bigBed narrowPeak replicated peaks ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF278YZX 1662355 ENCODE Processing Pipeline 9f48c338a3d04956b2239f231ad7da98 https://www.encodeproject.org/files/ENCFF922EVS/@@download/ENCFF922EVS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002AQI fastq reads ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 951216218 Bing Ren, UCSD fcd6ce2a5fd16ec0b82315fca2b6e654 SRA:SRR3651761 https://www.encodeproject.org/files/ENCFF002AQI/@@download/ENCFF002AQI.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF002AQJ fastq reads ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1175162435 Bing Ren, UCSD 111aaa9b136ffd019ef4abcd26ee7acb SRA:SRR3651760 https://www.encodeproject.org/files/ENCFF002AQJ/@@download/ENCFF002AQJ.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF377GIP bam unfiltered alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQJ, ENCFF806TVZ 1412691558 ENCODE Processing Pipeline 36df7dfdbae870969152704e948b54f0 https://www.encodeproject.org/files/ENCFF377GIP/@@download/ENCFF377GIP.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF124CMK bam unfiltered alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQI, ENCFF806TVZ 1138830404 ENCODE Processing Pipeline b3e77a29f8bd9b1af6d7226f40ad3729 https://www.encodeproject.org/files/ENCFF124CMK/@@download/ENCFF124CMK.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF991ANF bam alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQJ, ENCFF806TVZ 944320670 ENCODE Processing Pipeline 3bc193c0690aa0bd4b007caff624f65f https://www.encodeproject.org/files/ENCFF991ANF/@@download/ENCFF991ANF.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF271DZZ bam alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQI, ENCFF806TVZ 733147913 ENCODE Processing Pipeline 4d1b38905feda3e348db1b3c47a976c6 https://www.encodeproject.org/files/ENCFF271DZZ/@@download/ENCFF271DZZ.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF911DQW bam unfiltered alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQI, ENCFF018NEO 1140274114 ENCODE Processing Pipeline 5e1aef63f6ad35f220508a54e13fe95a https://www.encodeproject.org/files/ENCFF911DQW/@@download/ENCFF911DQW.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF936JYR bam unfiltered alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQJ, ENCFF018NEO 1414435622 ENCODE Processing Pipeline 00418996e3c80894646df94dd1ea8c47 https://www.encodeproject.org/files/ENCFF936JYR/@@download/ENCFF936JYR.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF945UFA bam alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQI, ENCFF018NEO 732900934 ENCODE Processing Pipeline 650ca02412e3134906536a3bdf37bae1 https://www.encodeproject.org/files/ENCFF945UFA/@@download/ENCFF945UFA.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF688CVA bam alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQJ, ENCFF018NEO 944005568 ENCODE Processing Pipeline 9ab75020e3540350afd2287e4fe02b84 https://www.encodeproject.org/files/ENCFF688CVA/@@download/ENCFF688CVA.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF001ZRE fastq reads ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 934917775 Bing Ren, UCSD a041aa478384ea000775e8c9d9edfef6 SRA:SRR3651589 https://www.encodeproject.org/files/ENCFF001ZRE/@@download/ENCFF001ZRE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001ZRG fastq reads ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 696486757 Bing Ren, UCSD 8a1b79e8db3736069c7c100db315f78c SRA:SRR3651590 https://www.encodeproject.org/files/ENCFF001ZRG/@@download/ENCFF001ZRG.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length, mild to moderate bottlenecking, low read depth ENCFF930CBV bam alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRG, ENCFF806TVZ 555301690 ENCODE Processing Pipeline d3b65ad992dae35f79947c04accf2239 https://www.encodeproject.org/files/ENCFF930CBV/@@download/ENCFF930CBV.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF224KHY bam alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRE, ENCFF806TVZ 766692216 ENCODE Processing Pipeline 7372f4908bf6ce3808be8d789f35d202 https://www.encodeproject.org/files/ENCFF224KHY/@@download/ENCFF224KHY.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF842KXS bed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224KHY, ENCFF224PDN, ENCFF366UML 1237089 ENCODE Processing Pipeline 7cfb10df8ff89446467cc4433b1bd6c8 https://www.encodeproject.org/files/ENCFF842KXS/@@download/ENCFF842KXS.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF731EKM bed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF930CBV 1537963 ENCODE Processing Pipeline 54c5130511851f5919db0152a77e8083 https://www.encodeproject.org/files/ENCFF731EKM/@@download/ENCFF731EKM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF784JBE bed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224KHY, ENCFF224PDN, ENCFF366UML, ENCFF930CBV 1378123 ENCODE Processing Pipeline 354e89829d0e3f99d398adab6046fe95 https://www.encodeproject.org/files/ENCFF784JBE/@@download/ENCFF784JBE.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF497YJO bigBed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF784JBE 3922752 ENCODE Processing Pipeline fd5424a404d5a07ee8238014b3c4f9a1 https://www.encodeproject.org/files/ENCFF497YJO/@@download/ENCFF497YJO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF691EXS bigBed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF842KXS 3595443 ENCODE Processing Pipeline 2bdc92beaf69f5945e041655c4767afa https://www.encodeproject.org/files/ENCFF691EXS/@@download/ENCFF691EXS.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF768HSO bigBed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF731EKM 3468278 ENCODE Processing Pipeline b216adf474949034683c9f6b7011156e https://www.encodeproject.org/files/ENCFF768HSO/@@download/ENCFF768HSO.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF172CJP bigWig signal p-value ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224KHY, ENCFF224PDN, ENCFF366UML 392971565 ENCODE Processing Pipeline 42f7d41d2bcc461e89a1efd43dd97463 https://www.encodeproject.org/files/ENCFF172CJP/@@download/ENCFF172CJP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF871MQB bigWig signal p-value ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF930CBV 351122862 ENCODE Processing Pipeline a8be4d7896a4a1861d3fe50621f58a54 https://www.encodeproject.org/files/ENCFF871MQB/@@download/ENCFF871MQB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF253LYJ bigWig signal p-value ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224KHY, ENCFF224PDN, ENCFF366UML, ENCFF930CBV 570900309 ENCODE Processing Pipeline 015d1a2248e28a7d39e9d1c1df8ace2b https://www.encodeproject.org/files/ENCFF253LYJ/@@download/ENCFF253LYJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF383PIY bigWig fold change over control ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224KHY, ENCFF224PDN, ENCFF366UML 395219899 ENCODE Processing Pipeline 4a9f8848aab59f8dbd0c4add8c2e29c5 https://www.encodeproject.org/files/ENCFF383PIY/@@download/ENCFF383PIY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF760UMZ bigWig fold change over control ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF930CBV 296657184 ENCODE Processing Pipeline f8503b274fafa4cbd89e5110ab2c9067 https://www.encodeproject.org/files/ENCFF760UMZ/@@download/ENCFF760UMZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF276YQG bigWig fold change over control ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224KHY, ENCFF224PDN, ENCFF366UML, ENCFF930CBV 562467808 ENCODE Processing Pipeline bf979bc80ab9bd88d1ec79368a9936d3 https://www.encodeproject.org/files/ENCFF276YQG/@@download/ENCFF276YQG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF537FMT bed narrowPeak replicated peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF731EKM, ENCFF784JBE, ENCFF842KXS 1139112 ENCODE Processing Pipeline eccf29db593e9c64ac835ae34e6431dd https://www.encodeproject.org/files/ENCFF537FMT/@@download/ENCFF537FMT.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF065BXN bigBed narrowPeak replicated peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF537FMT 2640845 ENCODE Processing Pipeline c8ce5c9f3a6d2194edf622f41a64bf3c https://www.encodeproject.org/files/ENCFF065BXN/@@download/ENCFF065BXN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF953QDM bam unfiltered alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRE, ENCFF018NEO 1185228867 ENCODE Processing Pipeline efea5eaa703fe9bc0204bfa257d94c96 https://www.encodeproject.org/files/ENCFF953QDM/@@download/ENCFF953QDM.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF780ZWA bam unfiltered alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRG, ENCFF018NEO 878659619 ENCODE Processing Pipeline a654e63810ef528ae4db6abd055c9be5 https://www.encodeproject.org/files/ENCFF780ZWA/@@download/ENCFF780ZWA.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF472ZSL bam alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRG, ENCFF018NEO 555174458 ENCODE Processing Pipeline f5adca8acbc69512350e5f1dcbc705bf https://www.encodeproject.org/files/ENCFF472ZSL/@@download/ENCFF472ZSL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF635BLS bam alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRE, ENCFF018NEO 766538000 ENCODE Processing Pipeline 535e7c68c9829d7d332af1ad93c92aaf https://www.encodeproject.org/files/ENCFF635BLS/@@download/ENCFF635BLS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF991CSD bed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF635BLS, ENCFF856WFI, ENCFF886TCK 1237395 ENCODE Processing Pipeline 04a34865d27ddc72f9640187c02585aa https://www.encodeproject.org/files/ENCFF991CSD/@@download/ENCFF991CSD.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF955HFB bed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF472ZSL, ENCFF635BLS, ENCFF856WFI, ENCFF886TCK 1378416 ENCODE Processing Pipeline 890e0f9a04c23b376f552029f3d47712 https://www.encodeproject.org/files/ENCFF955HFB/@@download/ENCFF955HFB.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF558HWK bed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF472ZSL, ENCFF856WFI, ENCFF886TCK 1537873 ENCODE Processing Pipeline 34268fd0a378b73fc41daa9b154180c9 https://www.encodeproject.org/files/ENCFF558HWK/@@download/ENCFF558HWK.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF817HFF bigBed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF991CSD 3597888 ENCODE Processing Pipeline 524506df0126f860c4274d8be94f28ab https://www.encodeproject.org/files/ENCFF817HFF/@@download/ENCFF817HFF.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF671DHB bigBed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF558HWK 3470524 ENCODE Processing Pipeline d2b2b7a9ffef83e5fac2b1b903cf4520 https://www.encodeproject.org/files/ENCFF671DHB/@@download/ENCFF671DHB.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF049DUY bigBed narrowPeak peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF955HFB 3924813 ENCODE Processing Pipeline 82e9641bc8e3ec62d4aa32770df3f1ce https://www.encodeproject.org/files/ENCFF049DUY/@@download/ENCFF049DUY.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF349LNU bigWig signal p-value ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF635BLS, ENCFF856WFI, ENCFF886TCK 356565860 ENCODE Processing Pipeline bc54e74a5106f010c75c9959243b2915 https://www.encodeproject.org/files/ENCFF349LNU/@@download/ENCFF349LNU.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF938JVX bigWig signal p-value ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF472ZSL, ENCFF856WFI, ENCFF886TCK 355402232 ENCODE Processing Pipeline 82b87a2780ebbc4b38a83a145887f759 https://www.encodeproject.org/files/ENCFF938JVX/@@download/ENCFF938JVX.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF576APR bigWig signal p-value ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF472ZSL, ENCFF635BLS, ENCFF856WFI, ENCFF886TCK 570947372 ENCODE Processing Pipeline 3bdef399b1d7d61cb454f3bf51585c97 https://www.encodeproject.org/files/ENCFF576APR/@@download/ENCFF576APR.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF428NGW bigWig fold change over control ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF635BLS, ENCFF856WFI, ENCFF886TCK 394795005 ENCODE Processing Pipeline 01dc7b7776f1a8fd206808ef923a6905 https://www.encodeproject.org/files/ENCFF428NGW/@@download/ENCFF428NGW.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF305IHU bigWig fold change over control ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF472ZSL, ENCFF635BLS, ENCFF856WFI, ENCFF886TCK 566829192 ENCODE Processing Pipeline c7e3d501eb859084c11e4f1ad5e0634a https://www.encodeproject.org/files/ENCFF305IHU/@@download/ENCFF305IHU.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF988YMK bigWig fold change over control ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF472ZSL, ENCFF856WFI, ENCFF886TCK 296587406 ENCODE Processing Pipeline 4d5d1558b4610c43279d61abeaa5713d https://www.encodeproject.org/files/ENCFF988YMK/@@download/ENCFF988YMK.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF954URD bed narrowPeak replicated peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF558HWK, ENCFF955HFB, ENCFF991CSD 1147349 ENCODE Processing Pipeline e835648a337b365ac71a2fb6b8c2963c https://www.encodeproject.org/files/ENCFF954URD/@@download/ENCFF954URD.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF165PEC bigBed narrowPeak replicated peaks ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF954URD 2660595 ENCODE Processing Pipeline 372da339c5041565ecccaf362c87ea41 https://www.encodeproject.org/files/ENCFF165PEC/@@download/ENCFF165PEC.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NYH bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NYS 406824707 Michael Snyder, Stanford f2f2a7364d90f9d8843403afe8efb344 https://www.encodeproject.org/files/ENCFF001NYH/@@download/ENCFF001NYH.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYJ bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NYW 412604098 Michael Snyder, Stanford 295164f0822a843a2a595ffa6becea3c https://www.encodeproject.org/files/ENCFF001NYJ/@@download/ENCFF001NYJ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYL bigWig signal ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYH, ENCFF001NYJ 306089222 Michael Snyder, Stanford 373fd396628e29e6db2feda1035627a7 https://www.encodeproject.org/files/ENCFF001NYL/@@download/ENCFF001NYL.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYS fastq reads ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 830401679 Michael Snyder, Stanford beffb9ed76538b0974ec0b40613fd892 https://www.encodeproject.org/files/ENCFF001NYS/@@download/ENCFF001NYS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYW fastq reads ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 834040149 Michael Snyder, Stanford 070f886a7b00767cf0c772c410c987e2 https://www.encodeproject.org/files/ENCFF001NYW/@@download/ENCFF001NYW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKC bed narrowPeak peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYH, ENCFF001NYJ 667063 Michael Snyder, Stanford 4c2f0c43503b0af66de1740694a3a557 https://www.encodeproject.org/files/ENCFF001YKC/@@download/ENCFF001YKC.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF011KPY bigBed narrowPeak peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NYH, ENCFF001NYJ 1570028 ENCODE Consortium 213cdc36790ba5c844568c13332c9633 https://www.encodeproject.org/files/ENCFF011KPY/@@download/ENCFF011KPY.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF524MMG bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYS, ENCFF018NEO 597649095 ENCODE Processing Pipeline 4db7a883ac01906dbdec5dde29dc2069 https://www.encodeproject.org/files/ENCFF524MMG/@@download/ENCFF524MMG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF755CWT bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYW, ENCFF018NEO 618654297 ENCODE Processing Pipeline 80fe7cf10cedae9caf422e9d9fe0b02e https://www.encodeproject.org/files/ENCFF755CWT/@@download/ENCFF755CWT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF471IHA bam unfiltered alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYW, ENCFF018NEO 962133352 ENCODE Processing Pipeline 8508462f50c6b3e560d1e00bfa00b83c https://www.encodeproject.org/files/ENCFF471IHA/@@download/ENCFF471IHA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF346GYV bam unfiltered alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYS, ENCFF018NEO 948893173 ENCODE Processing Pipeline 46eb218556e967c8d845580a8ae41e39 https://www.encodeproject.org/files/ENCFF346GYV/@@download/ENCFF346GYV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF757HWH bed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF524MMG, ENCFF755CWT 5200165 ENCODE Processing Pipeline 1460144741a98d8477e1e18cbbc3dec7 https://www.encodeproject.org/files/ENCFF757HWH/@@download/ENCFF757HWH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF030XGA bigWig signal p-value ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF524MMG 313187924 ENCODE Processing Pipeline 6fee7acd109341c842765fb39835b7d7 https://www.encodeproject.org/files/ENCFF030XGA/@@download/ENCFF030XGA.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF782UUZ bigWig signal p-value ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF524MMG, ENCFF755CWT 314824850 ENCODE Processing Pipeline 99bd4344b01b95752a200dfb0d8a1eec https://www.encodeproject.org/files/ENCFF782UUZ/@@download/ENCFF782UUZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF304LIF bigWig signal p-value ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF755CWT 317760514 ENCODE Processing Pipeline 67c500f2f72555ba949310d018c0308f https://www.encodeproject.org/files/ENCFF304LIF/@@download/ENCFF304LIF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF527GUY bigWig fold change over control ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF524MMG, ENCFF755CWT 468719760 ENCODE Processing Pipeline 5782cbfaecc6b6fcadfc6d98a04635bc https://www.encodeproject.org/files/ENCFF527GUY/@@download/ENCFF527GUY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF265SWL bigWig fold change over control ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF524MMG 275922140 ENCODE Processing Pipeline 78de448bded3600bcb34133e7fbcd49c https://www.encodeproject.org/files/ENCFF265SWL/@@download/ENCFF265SWL.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF183VEN bigWig fold change over control ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF755CWT 286870758 ENCODE Processing Pipeline 3ee5c2714b18db4cd33a0ae76be37d38 https://www.encodeproject.org/files/ENCFF183VEN/@@download/ENCFF183VEN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF052WVD bigBed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF865CMY 10485766 ENCODE Processing Pipeline 94d91d462720827a1fcc414f3bdb63ac https://www.encodeproject.org/files/ENCFF052WVD/@@download/ENCFF052WVD.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF865CMY bed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF524MMG 4619113 ENCODE Processing Pipeline 6958a2f5b199dc2aec04d4372e5226b6 https://www.encodeproject.org/files/ENCFF865CMY/@@download/ENCFF865CMY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF781DWI bed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF755CWT 4458569 ENCODE Processing Pipeline e16c2ac3b120c822a7f5e57567664280 https://www.encodeproject.org/files/ENCFF781DWI/@@download/ENCFF781DWI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF605EMF bigBed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF781DWI 10334166 ENCODE Processing Pipeline 52873e6713c0767446158e287ab7a67e https://www.encodeproject.org/files/ENCFF605EMF/@@download/ENCFF605EMF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF408HYG bigBed narrowPeak peaks and background as input for IDR ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF757HWH 11140596 ENCODE Processing Pipeline 1f25cc39bedcd941b9a1cffb7ba8945c https://www.encodeproject.org/files/ENCFF408HYG/@@download/ENCFF408HYG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF390APP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF440YEH 868252 ENCODE Processing Pipeline aeb9f1d2d251f150db5d71ca039ea7fd https://www.encodeproject.org/files/ENCFF390APP/@@download/ENCFF390APP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF884NAG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF791EKG 951123 ENCODE Processing Pipeline 2c3290737c60fc48f215eb145115ef97 https://www.encodeproject.org/files/ENCFF884NAG/@@download/ENCFF884NAG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF440YEH bed narrowPeak conservative idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF757HWH, ENCFF781DWI, ENCFF865CMY 450479 ENCODE Processing Pipeline 364aa808af6c11c1db08c2d189a49ff8 https://www.encodeproject.org/files/ENCFF440YEH/@@download/ENCFF440YEH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF791EKG bed narrowPeak optimal idr thresholded peaks ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547MET, ENCFF757HWH, ENCFF781DWI, ENCFF865CMY 510101 ENCODE Processing Pipeline b647d54fbffd121a72cd60c06deda226 https://www.encodeproject.org/files/ENCFF791EKG/@@download/ENCFF791EKG.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF728HAD fastq reads ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2346961862 Bing Ren, UCSD aa5ae25ef30819caaaac2534e5a3abc7 SRA:SRR3651821 https://www.encodeproject.org/files/ENCFF728HAD/@@download/ENCFF728HAD.fastq.gz Illumina HiSeq 2000 /files/ENCFF634EPK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF051ZGY fastq reads ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1737670103 Bing Ren, UCSD 0275c70f6c3cc8a61567ac4ffb911050 SRA:SRR3651822 https://www.encodeproject.org/files/ENCFF051ZGY/@@download/ENCFF051ZGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF511ESM/ released mild to moderate bottlenecking, inconsistent platforms ENCFF085PTB bam alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF728HAD, ENCFF806TVZ 1791273814 ENCODE Processing Pipeline 4f0d3283174fac10206f52ae55476e00 https://www.encodeproject.org/files/ENCFF085PTB/@@download/ENCFF085PTB.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF226TYL bam alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF051ZGY, ENCFF806TVZ 1302938761 ENCODE Processing Pipeline 9990d48631379165f5dfe1846d6828f6 https://www.encodeproject.org/files/ENCFF226TYL/@@download/ENCFF226TYL.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF202UKJ bed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF085PTB, ENCFF949WTQ 533173 ENCODE Processing Pipeline 43db32ff4242fda34048482fffbb2f49 https://www.encodeproject.org/files/ENCFF202UKJ/@@download/ENCFF202UKJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF098UMK bed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF226TYL 562017 ENCODE Processing Pipeline 58cbd5b7ade42f658fd6bcb64b70b09b https://www.encodeproject.org/files/ENCFF098UMK/@@download/ENCFF098UMK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF504IYN bed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF085PTB, ENCFF226TYL, ENCFF949WTQ 617376 ENCODE Processing Pipeline c7c8e9c8327601635fb3fcf2c709aaa5 https://www.encodeproject.org/files/ENCFF504IYN/@@download/ENCFF504IYN.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF665TBE bigBed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF098UMK 1804504 ENCODE Processing Pipeline 18a9ece5884918c8e29bbd085e0670c9 https://www.encodeproject.org/files/ENCFF665TBE/@@download/ENCFF665TBE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF882TBZ bigBed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF202UKJ 1716892 ENCODE Processing Pipeline 740b71daf22a9d9cd4b5f5110bfc405c https://www.encodeproject.org/files/ENCFF882TBZ/@@download/ENCFF882TBZ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF268LLV bigBed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF504IYN 1852862 ENCODE Processing Pipeline 2349d9a0ecb38a69654d16a4d23c4ff2 https://www.encodeproject.org/files/ENCFF268LLV/@@download/ENCFF268LLV.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF423GTS bigWig signal p-value ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF226TYL 447910684 ENCODE Processing Pipeline 390bc2b56fc34768d76e9f8352c604e0 https://www.encodeproject.org/files/ENCFF423GTS/@@download/ENCFF423GTS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF840UMT bigWig signal p-value ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF085PTB, ENCFF949WTQ 567651927 ENCODE Processing Pipeline de833880d438a0e738ffbe742837a6c1 https://www.encodeproject.org/files/ENCFF840UMT/@@download/ENCFF840UMT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF399ZSP bigWig signal p-value ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF085PTB, ENCFF226TYL, ENCFF949WTQ 1026704064 ENCODE Processing Pipeline 17e222e83b3b7ab8a43cacfad52b1e5e https://www.encodeproject.org/files/ENCFF399ZSP/@@download/ENCFF399ZSP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF933TAS bigWig fold change over control ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF029DGH, ENCFF226TYL 462963580 ENCODE Processing Pipeline ff4ea28f2dda733473f18fc388cf489d https://www.encodeproject.org/files/ENCFF933TAS/@@download/ENCFF933TAS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF139LCQ bigWig fold change over control ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF085PTB, ENCFF949WTQ 644400571 ENCODE Processing Pipeline e1e4096133eec591e43bace94fce6031 https://www.encodeproject.org/files/ENCFF139LCQ/@@download/ENCFF139LCQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF290BGY bigWig fold change over control ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF029DGH, ENCFF085PTB, ENCFF226TYL, ENCFF949WTQ 1042498359 ENCODE Processing Pipeline 968db227362242a294ea1b2a7739c66c https://www.encodeproject.org/files/ENCFF290BGY/@@download/ENCFF290BGY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF718GKF bigBed narrowPeak replicated peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF288BTL 1597830 ENCODE Processing Pipeline d819907d3a5ab143b6f50e3855580e1c https://www.encodeproject.org/files/ENCFF718GKF/@@download/ENCFF718GKF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF288BTL bed narrowPeak replicated peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF098UMK, ENCFF202UKJ, ENCFF504IYN 686920 ENCODE Processing Pipeline 84d447d097a21d464d8f4a8d39bb907c https://www.encodeproject.org/files/ENCFF288BTL/@@download/ENCFF288BTL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF776QZY bam unfiltered alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF728HAD 2662557318 ENCODE Processing Pipeline 574d1c721fac1e72c697940667b047fa https://www.encodeproject.org/files/ENCFF776QZY/@@download/ENCFF776QZY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF730NXG bam unfiltered alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF051ZGY 1928972490 ENCODE Processing Pipeline 677fd87b185928d1ec03939fe69e1a80 https://www.encodeproject.org/files/ENCFF730NXG/@@download/ENCFF730NXG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF401RKM bam alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF051ZGY 1302766661 ENCODE Processing Pipeline debe4fc228932d4a70409d80bae5a03b https://www.encodeproject.org/files/ENCFF401RKM/@@download/ENCFF401RKM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF669NCH bam alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF728HAD 1790934400 ENCODE Processing Pipeline cec9d0369491562ce2211f4ffae2432a https://www.encodeproject.org/files/ENCFF669NCH/@@download/ENCFF669NCH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF533WWZ bed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF401RKM 580461 ENCODE Processing Pipeline 42a8f41034ac76aa96d9ceb9ed5ada67 https://www.encodeproject.org/files/ENCFF533WWZ/@@download/ENCFF533WWZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF108FAU bed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF669NCH 539877 ENCODE Processing Pipeline 72f36e5c3cdac12da394a7f2232e420c https://www.encodeproject.org/files/ENCFF108FAU/@@download/ENCFF108FAU.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF599XZP bed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF401RKM, ENCFF669NCH 637892 ENCODE Processing Pipeline a3cf0b655918d2a3e648e33c11b59adf https://www.encodeproject.org/files/ENCFF599XZP/@@download/ENCFF599XZP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF470CKA bigBed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF108FAU 1724066 ENCODE Processing Pipeline fbba201925a893646e8fbfae7011600b https://www.encodeproject.org/files/ENCFF470CKA/@@download/ENCFF470CKA.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF724LHL bigBed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF533WWZ 1830970 ENCODE Processing Pipeline 8d46924d05b400e04e31ca9f514d1706 https://www.encodeproject.org/files/ENCFF724LHL/@@download/ENCFF724LHL.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF287IVB bigBed narrowPeak peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF599XZP 1874275 ENCODE Processing Pipeline 8fe0b05471894908602c16697ed046a5 https://www.encodeproject.org/files/ENCFF287IVB/@@download/ENCFF287IVB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF169IHS bigWig signal p-value ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF401RKM 610568580 ENCODE Processing Pipeline ad7378432015622b69d41fbb370578fd https://www.encodeproject.org/files/ENCFF169IHS/@@download/ENCFF169IHS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF098IHV bigWig signal p-value ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF669NCH 701968770 ENCODE Processing Pipeline 5b6d6f43ae548f875f9f96d90f9081a5 https://www.encodeproject.org/files/ENCFF098IHV/@@download/ENCFF098IHV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF592VZY bigWig signal p-value ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF401RKM, ENCFF669NCH 1035637127 ENCODE Processing Pipeline c02bc57dc7f7aab431572bbdf500e2ce https://www.encodeproject.org/files/ENCFF592VZY/@@download/ENCFF592VZY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF835CHF bigWig fold change over control ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF079JAD, ENCFF401RKM 547132246 ENCODE Processing Pipeline b8f8b3cf529dd23b9f5e9024e6fbc0ef https://www.encodeproject.org/files/ENCFF835CHF/@@download/ENCFF835CHF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF754YEY bigWig fold change over control ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF269JKO, ENCFF669NCH 724513735 ENCODE Processing Pipeline 10a4eb58c870643a8b2d5e75756b0fb1 https://www.encodeproject.org/files/ENCFF754YEY/@@download/ENCFF754YEY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF551UEX bigWig fold change over control ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF079JAD, ENCFF269JKO, ENCFF401RKM, ENCFF669NCH 1213267786 ENCODE Processing Pipeline 5df3f36e0f3d513b56ab2ac903876311 https://www.encodeproject.org/files/ENCFF551UEX/@@download/ENCFF551UEX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF669SQD bigBed narrowPeak replicated peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF531LFQ 1600772 ENCODE Processing Pipeline 01a281e2c07b3321ee0b1cae9d6475d7 https://www.encodeproject.org/files/ENCFF669SQD/@@download/ENCFF669SQD.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF531LFQ bed narrowPeak replicated peaks ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF108FAU, ENCFF533WWZ, ENCFF599XZP 692168 ENCODE Processing Pipeline 2d4843c9f61e8d07526e89e422dfc1cd https://www.encodeproject.org/files/ENCFF531LFQ/@@download/ENCFF531LFQ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002AQS fastq reads ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2586132073 Bing Ren, UCSD b38195163d08da738999cd74dd5a24ba SRA:SRR3651885 https://www.encodeproject.org/files/ENCFF002AQS/@@download/ENCFF002AQS.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF002AQU fastq reads ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2311159673 Bing Ren, UCSD 6baf4553aac55425abf81b5e255e488a SRA:SRR3651884 https://www.encodeproject.org/files/ENCFF002AQU/@@download/ENCFF002AQU.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF642QKT bam unfiltered alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQS, ENCFF806TVZ 2904815244 ENCODE Processing Pipeline 1be47563dc7b81efb8eba32ab934df90 https://www.encodeproject.org/files/ENCFF642QKT/@@download/ENCFF642QKT.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF207XER bam unfiltered alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQU, ENCFF806TVZ 2615578713 ENCODE Processing Pipeline 322bfcee6ce17ec25af6c745c2c829aa https://www.encodeproject.org/files/ENCFF207XER/@@download/ENCFF207XER.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF977HMC bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQS, ENCFF806TVZ 1941916943 ENCODE Processing Pipeline 898cedde60ca75b507d2eebce36299d8 https://www.encodeproject.org/files/ENCFF977HMC/@@download/ENCFF977HMC.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF720UVE bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQU, ENCFF806TVZ 1785974992 ENCODE Processing Pipeline 4c4223222177f5cb8e3422fd79a54ae0 https://www.encodeproject.org/files/ENCFF720UVE/@@download/ENCFF720UVE.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF370MUS bam unfiltered alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQS, ENCFF018NEO 2907920726 ENCODE Processing Pipeline 25b167018a566089431c3f25b6df0ad8 https://www.encodeproject.org/files/ENCFF370MUS/@@download/ENCFF370MUS.bam mm10 released insufficient read depth for broad peaks control ENCFF582RRQ bam unfiltered alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQU, ENCFF018NEO 2618420421 ENCODE Processing Pipeline 417b77b7729c858a4b96fc2d272572c8 https://www.encodeproject.org/files/ENCFF582RRQ/@@download/ENCFF582RRQ.bam mm10 released insufficient read depth for broad peaks control ENCFF160FCQ bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQS, ENCFF018NEO 1941336282 ENCODE Processing Pipeline ee23e052d3a1dab789e3ee591070d4c6 https://www.encodeproject.org/files/ENCFF160FCQ/@@download/ENCFF160FCQ.bam mm10 released insufficient read depth for broad peaks control ENCFF504TMU bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQU, ENCFF018NEO 1785444949 ENCODE Processing Pipeline d4678b73bb244e5749f54c1fc8f99782 https://www.encodeproject.org/files/ENCFF504TMU/@@download/ENCFF504TMU.bam mm10 released insufficient read depth for broad peaks control ENCFF471JUA bam unfiltered alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQS, ENCFF018NEO 2360143353 ENCODE Processing Pipeline 4971b8ac1ca39d4f5c05e5ba5e2d2a1b https://www.encodeproject.org/files/ENCFF471JUA/@@download/ENCFF471JUA.bam mm10 released insufficient read depth for broad peaks control ENCFF967KNB bam unfiltered alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQU, ENCFF018NEO 2125059099 ENCODE Processing Pipeline fce861716a0a3ab8cec1c4e447f562aa https://www.encodeproject.org/files/ENCFF967KNB/@@download/ENCFF967KNB.bam mm10 released insufficient read depth for broad peaks control ENCFF979XVT bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQU, ENCFF018NEO 1358156010 ENCODE Processing Pipeline 39e7a300eb6a77c4485955eb77cbe48d https://www.encodeproject.org/files/ENCFF979XVT/@@download/ENCFF979XVT.bam mm10 released insufficient read depth for broad peaks control ENCFF322DCQ bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQS, ENCFF018NEO 1477487887 ENCODE Processing Pipeline 9b4292c4db7cc4abec711a7228f6745d https://www.encodeproject.org/files/ENCFF322DCQ/@@download/ENCFF322DCQ.bam mm10 released insufficient read depth for broad peaks control ENCFF001MDR bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MDZ 4977267444 Ross Hardison, PennState bec570505294f282c7590645073c8bf0 https://www.encodeproject.org/files/ENCFF001MDR/@@download/ENCFF001MDR.bam mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MDS bigBed broadPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDV 4108281 Ross Hardison, PennState 38c554a5d7e260b3061b84324ad162a6 https://www.encodeproject.org/files/ENCFF001MDS/@@download/ENCFF001MDS.bigBed mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MDT bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MEB 7201398068 Ross Hardison, PennState 745351715b27b51eda95112562be8dea https://www.encodeproject.org/files/ENCFF001MDT/@@download/ENCFF001MDT.bam mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MDU bigBed broadPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDX 5427228 Ross Hardison, PennState c1787ac1b4f3a71a67ef183c22d8df54 https://www.encodeproject.org/files/ENCFF001MDU/@@download/ENCFF001MDU.bigBed mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MDV bigBed broadPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDW 1235500 Ross Hardison, PennState 79c7234eddc20525187ad07382c36bc7 https://www.encodeproject.org/files/ENCFF001MDV/@@download/ENCFF001MDV.bigBed mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MDW bigWig signal ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5588540967 Ross Hardison, PennState 4d8baf05099c9579b315db67b7c795a2 https://www.encodeproject.org/files/ENCFF001MDW/@@download/ENCFF001MDW.bigWig mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MDX bigWig signal ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 4564726400 Ross Hardison, PennState 8aa4d520feda3bf7c6524f817c8e05b6 https://www.encodeproject.org/files/ENCFF001MDX/@@download/ENCFF001MDX.bigWig mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MDY bigWig signal ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 6038522300 Ross Hardison, PennState 139286a4574f20f18681fe5a32ea455d https://www.encodeproject.org/files/ENCFF001MDY/@@download/ENCFF001MDY.bigWig mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MDZ fastq reads ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 5122575498 Ross Hardison, PennState 1505b6be50bdaffe4a1964723275f17e https://www.encodeproject.org/files/ENCFF001MDZ/@@download/ENCFF001MDZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001MEB fastq reads ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 6840546291 Ross Hardison, PennState 350dda4f5b28cb5a24b5db3b97f0dfdc https://www.encodeproject.org/files/ENCFF001MEB/@@download/ENCFF001MEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUT/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001YDV bed broadPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1397721 Ross Hardison, PennState 98af5f3a72904eb655143cb287841a4d https://www.encodeproject.org/files/ENCFF001YDV/@@download/ENCFF001YDV.bed.gz mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDW bed broadPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 609868 Ross Hardison, PennState 5f7e20216d052ebe741aaa328f46a864 https://www.encodeproject.org/files/ENCFF001YDW/@@download/ENCFF001YDW.bed.gz mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDX bed broadPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1699140 Ross Hardison, PennState 81b1ac9e6900c7597fb32385d0ef90b3 https://www.encodeproject.org/files/ENCFF001YDX/@@download/ENCFF001YDX.bed.gz mm9 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF144FFQ bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MEB, ENCFF806TVZ 4251004915 ENCODE Processing Pipeline 408ad456fb5d8618eeaf450d0e61f162 https://www.encodeproject.org/files/ENCFF144FFQ/@@download/ENCFF144FFQ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF403TYV bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MDZ, ENCFF806TVZ 2498013465 ENCODE Processing Pipeline d11ce27a4be7c673e93a5f155953ea3d https://www.encodeproject.org/files/ENCFF403TYV/@@download/ENCFF403TYV.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF921EPF bam unfiltered alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MDZ, ENCFF018NEO 4188000284 ENCODE Processing Pipeline 0363e773559dda21c95602d5bb33e0d2 https://www.encodeproject.org/files/ENCFF921EPF/@@download/ENCFF921EPF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF044VRO bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MDZ, ENCFF018NEO 2051238856 ENCODE Processing Pipeline 63cd0ef9ea743d3209d109dc74fb30b6 https://www.encodeproject.org/files/ENCFF044VRO/@@download/ENCFF044VRO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF723XPO bam unfiltered alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MEB, ENCFF018NEO 6244901614 ENCODE Processing Pipeline f9ad6fc85c5a53a65ec2982b8cfd6127 https://www.encodeproject.org/files/ENCFF723XPO/@@download/ENCFF723XPO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF249VUZ bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MEB, ENCFF018NEO 3753732772 ENCODE Processing Pipeline afbccfb533111761786f3fa6c9dcd1d3 https://www.encodeproject.org/files/ENCFF249VUZ/@@download/ENCFF249VUZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF664FKW bed narrowPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF044VRO, ENCFF249VUZ, ENCFF769SND, ENCFF887RWQ 4128057 ENCODE Processing Pipeline 614c5fa4c1b4c35034c6612990e5d199 https://www.encodeproject.org/files/ENCFF664FKW/@@download/ENCFF664FKW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF407GYU bed narrowPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF249VUZ, ENCFF769SND, ENCFF887RWQ 8044872 ENCODE Processing Pipeline 83142eb3b0d466a14794908acff0bd82 https://www.encodeproject.org/files/ENCFF407GYU/@@download/ENCFF407GYU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF321LFN bigBed narrowPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF664FKW 9498575 ENCODE Processing Pipeline 5a3a885102d57f057996783e469a70aa https://www.encodeproject.org/files/ENCFF321LFN/@@download/ENCFF321LFN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF102EDR bed narrowPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF044VRO, ENCFF769SND, ENCFF887RWQ 1011176 ENCODE Processing Pipeline c31e0a0b07a65d6e76d8850530f3bb0e https://www.encodeproject.org/files/ENCFF102EDR/@@download/ENCFF102EDR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF116CHS bigBed narrowPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF102EDR 2922707 ENCODE Processing Pipeline 87f2a22a86d40b024122991c8693fe11 https://www.encodeproject.org/files/ENCFF116CHS/@@download/ENCFF116CHS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF196XVQ bigBed narrowPeak peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF407GYU 18094757 ENCODE Processing Pipeline 78a980b89c40fa1a493f2e0d92ecc6e2 https://www.encodeproject.org/files/ENCFF196XVQ/@@download/ENCFF196XVQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF985FNU bigWig signal p-value ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF249VUZ, ENCFF769SND, ENCFF887RWQ 1254806647 ENCODE Processing Pipeline 4ea01d011727db41cd591b4898b7c775 https://www.encodeproject.org/files/ENCFF985FNU/@@download/ENCFF985FNU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF486TXE bigWig signal p-value ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF044VRO, ENCFF769SND, ENCFF887RWQ 926622237 ENCODE Processing Pipeline b2d684594db86791d799358ad3ffafcc https://www.encodeproject.org/files/ENCFF486TXE/@@download/ENCFF486TXE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF778YJF bigWig signal p-value ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF044VRO, ENCFF249VUZ, ENCFF769SND, ENCFF887RWQ 1597451443 ENCODE Processing Pipeline 9d36b502c97e5617f6e231cbefdf4ef2 https://www.encodeproject.org/files/ENCFF778YJF/@@download/ENCFF778YJF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF491IVN bigWig fold change over control ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF249VUZ, ENCFF769SND, ENCFF887RWQ 1238555850 ENCODE Processing Pipeline a8f2f45cfba185ec4dce061fee3acc38 https://www.encodeproject.org/files/ENCFF491IVN/@@download/ENCFF491IVN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF020FXI bigWig fold change over control ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF044VRO, ENCFF769SND, ENCFF887RWQ 789417706 ENCODE Processing Pipeline c76d43a411a485586673aac65c795a7c https://www.encodeproject.org/files/ENCFF020FXI/@@download/ENCFF020FXI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF211IXB bigWig fold change over control ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF044VRO, ENCFF249VUZ, ENCFF769SND, ENCFF887RWQ 1585839814 ENCODE Processing Pipeline e096d306de97c18316f2be4f39171b3a https://www.encodeproject.org/files/ENCFF211IXB/@@download/ENCFF211IXB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF661TZV bed narrowPeak replicated peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF102EDR, ENCFF407GYU, ENCFF664FKW 2653399 ENCODE Processing Pipeline b7244899966035ba60c6385e6deb9de4 https://www.encodeproject.org/files/ENCFF661TZV/@@download/ENCFF661TZV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF953ZOH bigBed narrowPeak replicated peaks ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF661TZV 5903087 ENCODE Processing Pipeline 804caea97e80161d49e8e30b55e6867a https://www.encodeproject.org/files/ENCFF953ZOH/@@download/ENCFF953ZOH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF002BGJ fastq reads ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2270951301 Bing Ren, UCSD 42439a00db982f72b2361fe6b1cfc431 SRA:SRR3652968 https://www.encodeproject.org/files/ENCFF002BGJ/@@download/ENCFF002BGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUY/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length ENCFF002BGM fastq reads ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2253641719 Bing Ren, UCSD 78c66d86eb8a15b05b220dfbfc35a5f4 SRA:SRR3652967 https://www.encodeproject.org/files/ENCFF002BGM/@@download/ENCFF002BGM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZVC/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length ENCFF556RXV bam alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGM, ENCFF806TVZ 1210343331 ENCODE Processing Pipeline 326faf30fd75eb2a89e2177e4f63e93d https://www.encodeproject.org/files/ENCFF556RXV/@@download/ENCFF556RXV.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF999NPC bam alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGJ, ENCFF806TVZ 1188720245 ENCODE Processing Pipeline 4bf6cc0113138625def240e0e120559b https://www.encodeproject.org/files/ENCFF999NPC/@@download/ENCFF999NPC.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF933TKZ bigBed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF581CTC 3227818 ENCODE Processing Pipeline 3f29f84a6fa0309374b9429de58660d4 https://www.encodeproject.org/files/ENCFF933TKZ/@@download/ENCFF933TKZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF475NDG bigBed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF773ISQ 3321772 ENCODE Processing Pipeline 2081729702bfae328a6d292050a3590e https://www.encodeproject.org/files/ENCFF475NDG/@@download/ENCFF475NDG.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF289CFC bed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF556RXV, ENCFF999NPC 973962 ENCODE Processing Pipeline 3b20a375917edd05f541c0abf4e1f0bd https://www.encodeproject.org/files/ENCFF289CFC/@@download/ENCFF289CFC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF773ISQ bed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF556RXV 1077497 ENCODE Processing Pipeline e4402df89adde866d6ce74ffd0782b2b https://www.encodeproject.org/files/ENCFF773ISQ/@@download/ENCFF773ISQ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF236SYD bigBed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF289CFC 3031633 ENCODE Processing Pipeline 4b2f43cc6e523d51f7217cc37c9d5d28 https://www.encodeproject.org/files/ENCFF236SYD/@@download/ENCFF236SYD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF581CTC bed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF999NPC 1035780 ENCODE Processing Pipeline 607ecb1aae410baa4d4cb858426362a2 https://www.encodeproject.org/files/ENCFF581CTC/@@download/ENCFF581CTC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF999XKM bigWig signal p-value ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF999NPC 464933330 ENCODE Processing Pipeline eb1e2866ee21cf51135e798afea9ec63 https://www.encodeproject.org/files/ENCFF999XKM/@@download/ENCFF999XKM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF916FHI bigWig signal p-value ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF556RXV, ENCFF999NPC 513908619 ENCODE Processing Pipeline 625a8a449a9115562f4b55db17f48238 https://www.encodeproject.org/files/ENCFF916FHI/@@download/ENCFF916FHI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF359ZCM bigWig signal p-value ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF556RXV 397377314 ENCODE Processing Pipeline a0ef49ecc3c447f8a7b6f010135f4354 https://www.encodeproject.org/files/ENCFF359ZCM/@@download/ENCFF359ZCM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF135RIN bigWig fold change over control ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF366UML, ENCFF999NPC 413245409 ENCODE Processing Pipeline ba45930cbed22ca832e9dc98a24164a9 https://www.encodeproject.org/files/ENCFF135RIN/@@download/ENCFF135RIN.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF804YVB bigWig fold change over control ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF366UML, ENCFF556RXV 414985702 ENCODE Processing Pipeline 5d5150b6c360144817d51877bd8efd82 https://www.encodeproject.org/files/ENCFF804YVB/@@download/ENCFF804YVB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF892UFP bigWig fold change over control ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF366UML, ENCFF556RXV, ENCFF999NPC 670232027 ENCODE Processing Pipeline 8959be299e8b5675d902a6001fdaf6c5 https://www.encodeproject.org/files/ENCFF892UFP/@@download/ENCFF892UFP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF063THN bed narrowPeak replicated peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF289CFC, ENCFF581CTC, ENCFF773ISQ 1198457 ENCODE Processing Pipeline 0028a1c368ce961508790631eff27228 https://www.encodeproject.org/files/ENCFF063THN/@@download/ENCFF063THN.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF096QHC bigBed narrowPeak replicated peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF063THN 2724815 ENCODE Processing Pipeline f012753397352fca93b52c5e8c5d90e5 https://www.encodeproject.org/files/ENCFF096QHC/@@download/ENCFF096QHC.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF606JUW bam alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGM, ENCFF018NEO 959408122 ENCODE Processing Pipeline 0d800d06f519fe35f3ffe4ed4eb938ee https://www.encodeproject.org/files/ENCFF606JUW/@@download/ENCFF606JUW.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF858KPK bam unfiltered alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGM, ENCFF018NEO 1984233668 ENCODE Processing Pipeline be4032686e99fb9baafb128da9777107 https://www.encodeproject.org/files/ENCFF858KPK/@@download/ENCFF858KPK.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF904HZT bam unfiltered alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGJ, ENCFF018NEO 1989597017 ENCODE Processing Pipeline 0efd222897dff883b0d7f2a66694b613 https://www.encodeproject.org/files/ENCFF904HZT/@@download/ENCFF904HZT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF882QQS bam alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGJ, ENCFF018NEO 945943545 ENCODE Processing Pipeline da306dd9d0d1258faf96ccc01a8cbb35 https://www.encodeproject.org/files/ENCFF882QQS/@@download/ENCFF882QQS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF801WKM bed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF882QQS, ENCFF886TCK 1116675 ENCODE Processing Pipeline 1388b26326a4a4b0dd0f65276abadea8 https://www.encodeproject.org/files/ENCFF801WKM/@@download/ENCFF801WKM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF873IHH bed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF606JUW, ENCFF856WFI, ENCFF886TCK 1163675 ENCODE Processing Pipeline 24bc6f0ebc1436274f78fe1d53c5ca83 https://www.encodeproject.org/files/ENCFF873IHH/@@download/ENCFF873IHH.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF919ZFJ bed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF606JUW, ENCFF856WFI, ENCFF882QQS, ENCFF886TCK 980524 ENCODE Processing Pipeline fe0f5f5c1ad5bdb36da8a3e925906fba https://www.encodeproject.org/files/ENCFF919ZFJ/@@download/ENCFF919ZFJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF360SXZ bigBed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF801WKM 3438753 ENCODE Processing Pipeline 2bad80deab7150dac8bee22e23b09846 https://www.encodeproject.org/files/ENCFF360SXZ/@@download/ENCFF360SXZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF534ZFO bigBed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF873IHH 3541075 ENCODE Processing Pipeline a09f56f5fea902bfdaedae18fd9c339f https://www.encodeproject.org/files/ENCFF534ZFO/@@download/ENCFF534ZFO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF977ZES bigBed narrowPeak peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF919ZFJ 3047214 ENCODE Processing Pipeline ffcc691f9ae74b66bc86097f30fc74f5 https://www.encodeproject.org/files/ENCFF977ZES/@@download/ENCFF977ZES.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF041CBV bigWig signal p-value ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF882QQS, ENCFF886TCK 415351971 ENCODE Processing Pipeline d987213291197b18a53c00f5799c6955 https://www.encodeproject.org/files/ENCFF041CBV/@@download/ENCFF041CBV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF043WOL bigWig signal p-value ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF606JUW, ENCFF856WFI, ENCFF886TCK 507055070 ENCODE Processing Pipeline c2d2e389638977edcab5088e1107db3f https://www.encodeproject.org/files/ENCFF043WOL/@@download/ENCFF043WOL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF218GWY bigWig signal p-value ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF606JUW, ENCFF856WFI, ENCFF882QQS, ENCFF886TCK 521346005 ENCODE Processing Pipeline 762d094238cfd1043a8d01b6f8438048 https://www.encodeproject.org/files/ENCFF218GWY/@@download/ENCFF218GWY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF452UAE bigWig fold change over control ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF882QQS, ENCFF886TCK 404394813 ENCODE Processing Pipeline a18c73049ee62428300d317bc75d9551 https://www.encodeproject.org/files/ENCFF452UAE/@@download/ENCFF452UAE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF328ONH bigWig fold change over control ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF606JUW, ENCFF856WFI, ENCFF886TCK 402177552 ENCODE Processing Pipeline a865dc8ff39323ee04f6e31adc536a84 https://www.encodeproject.org/files/ENCFF328ONH/@@download/ENCFF328ONH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF311RNJ bigWig fold change over control ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF606JUW, ENCFF856WFI, ENCFF882QQS, ENCFF886TCK 646931544 ENCODE Processing Pipeline e46c42a09ece7c55263ed51d980fefa7 https://www.encodeproject.org/files/ENCFF311RNJ/@@download/ENCFF311RNJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF976DAN bed narrowPeak replicated peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF801WKM, ENCFF873IHH, ENCFF919ZFJ 1250539 ENCODE Processing Pipeline 22e0f4a2221ca2f5bb7418f8585058e9 https://www.encodeproject.org/files/ENCFF976DAN/@@download/ENCFF976DAN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF530CTQ bigBed narrowPeak replicated peaks ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF976DAN 2821712 ENCODE Processing Pipeline c15f14194a63f46c7d277fea264645ba https://www.encodeproject.org/files/ENCFF530CTQ/@@download/ENCFF530CTQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF536TSM bam alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF158LQT, ENCFF806TVZ 1403369685 ENCODE Processing Pipeline debf1adf2eb1c27a5534fa1a3a6e3306 https://www.encodeproject.org/files/ENCFF536TSM/@@download/ENCFF536TSM.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF826EWA fastq reads ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2262504464 Bing Ren, UCSD cf061560cbb16596dfe9bc55c1538d80 SRA:SRR3651913 https://www.encodeproject.org/files/ENCFF826EWA/@@download/ENCFF826EWA.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF158LQT fastq reads ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2674966286 Bing Ren, UCSD 5eb6aac99da362c91cb68114c009cd9f SRA:SRR3651912 https://www.encodeproject.org/files/ENCFF158LQT/@@download/ENCFF158LQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF238QVV bam alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF826EWA 1570342294 ENCODE Processing Pipeline 45126141112596890d5eb229797dc454 https://www.encodeproject.org/files/ENCFF238QVV/@@download/ENCFF238QVV.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF940QYL bed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF238QVV, ENCFF455EJT, ENCFF536TSM, ENCFF844LBC 2361447 ENCODE Processing Pipeline 5f475a1301944c772895a5c66aec8204 https://www.encodeproject.org/files/ENCFF940QYL/@@download/ENCFF940QYL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF801FSW bed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF536TSM, ENCFF844LBC 1763103 ENCODE Processing Pipeline 45ddc403278043299b577c34b3a84340 https://www.encodeproject.org/files/ENCFF801FSW/@@download/ENCFF801FSW.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF928TCS bigBed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF940QYL 6522505 ENCODE Processing Pipeline 2693e811445db37db6b61588185f2521 https://www.encodeproject.org/files/ENCFF928TCS/@@download/ENCFF928TCS.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF352OKL bed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF238QVV, ENCFF455EJT 2038831 ENCODE Processing Pipeline f54bddd35afaacf5b59a120bb48a5f46 https://www.encodeproject.org/files/ENCFF352OKL/@@download/ENCFF352OKL.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF029MVY bigBed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF352OKL 4475541 ENCODE Processing Pipeline 9e7fbd9d370bcf1c2dd7b3f69cc64072 https://www.encodeproject.org/files/ENCFF029MVY/@@download/ENCFF029MVY.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF158JCS bigWig signal p-value ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF238QVV, ENCFF455EJT 561537082 ENCODE Processing Pipeline 3a31a3b9089540023fb7e5b4c07a546c https://www.encodeproject.org/files/ENCFF158JCS/@@download/ENCFF158JCS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF331NMK bigBed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF801FSW 4006746 ENCODE Processing Pipeline c847dc984c07ed37b99695ea93a43e8c https://www.encodeproject.org/files/ENCFF331NMK/@@download/ENCFF331NMK.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF547TPL bigWig signal p-value ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF536TSM, ENCFF844LBC 444362633 ENCODE Processing Pipeline c0677ff51bdfa74fbf89d047bc52b00f https://www.encodeproject.org/files/ENCFF547TPL/@@download/ENCFF547TPL.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF036STM bigWig signal p-value ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF238QVV, ENCFF455EJT, ENCFF536TSM, ENCFF844LBC 1024970629 ENCODE Processing Pipeline 68e1e1c4c35b38b021375adc71862ba8 https://www.encodeproject.org/files/ENCFF036STM/@@download/ENCFF036STM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF302ROF bigWig fold change over control ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF238QVV, ENCFF455EJT 536105573 ENCODE Processing Pipeline 509971bbfdb6a990dc252185cb30e794 https://www.encodeproject.org/files/ENCFF302ROF/@@download/ENCFF302ROF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF683TEZ bigWig fold change over control ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF536TSM, ENCFF844LBC 488336493 ENCODE Processing Pipeline 2901cdafaf20570fa50db87f164ee844 https://www.encodeproject.org/files/ENCFF683TEZ/@@download/ENCFF683TEZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF421XOI bigWig fold change over control ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF238QVV, ENCFF455EJT, ENCFF536TSM, ENCFF844LBC 1021189682 ENCODE Processing Pipeline aaabab09d7143dded6c6f7c2afc30f03 https://www.encodeproject.org/files/ENCFF421XOI/@@download/ENCFF421XOI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF691YTW bigBed narrowPeak replicated peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF007JWR 3653156 ENCODE Processing Pipeline 1c806b35d8d372fb6a71387913b470cd https://www.encodeproject.org/files/ENCFF691YTW/@@download/ENCFF691YTW.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF007JWR bed narrowPeak replicated peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF352OKL, ENCFF801FSW, ENCFF940QYL 1618128 ENCODE Processing Pipeline 2f21777669699fceaaa25cdaf358e81c https://www.encodeproject.org/files/ENCFF007JWR/@@download/ENCFF007JWR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF028HPQ bam unfiltered alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF826EWA 2581272149 ENCODE Processing Pipeline 443e7229a06bf38b5e38102edd3c5f36 https://www.encodeproject.org/files/ENCFF028HPQ/@@download/ENCFF028HPQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF998XOA bam unfiltered alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF158LQT 2945288466 ENCODE Processing Pipeline e49c6b449f693c796bdffb2b9455b234 https://www.encodeproject.org/files/ENCFF998XOA/@@download/ENCFF998XOA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF963VRB bam alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF158LQT 1403110422 ENCODE Processing Pipeline 1a296c215773ef5bf838b70a1b9c21ae https://www.encodeproject.org/files/ENCFF963VRB/@@download/ENCFF963VRB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF713WNF bam alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF826EWA 1570081586 ENCODE Processing Pipeline 8c7a74c646203870b7e6efda71c38ecd https://www.encodeproject.org/files/ENCFF713WNF/@@download/ENCFF713WNF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF529ZYU bed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF713WNF 2060123 ENCODE Processing Pipeline a11680fff764a9d443c3539e26adf7b8 https://www.encodeproject.org/files/ENCFF529ZYU/@@download/ENCFF529ZYU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF574YCQ bigWig signal p-value ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF713WNF 515044940 ENCODE Processing Pipeline 0a69529db271d84e0807717077019ad0 https://www.encodeproject.org/files/ENCFF574YCQ/@@download/ENCFF574YCQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF371IFE bigWig signal p-value ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF963VRB 656948139 ENCODE Processing Pipeline 00a8033c51dceb5825734ead41c6d9d5 https://www.encodeproject.org/files/ENCFF371IFE/@@download/ENCFF371IFE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF382SPQ bigBed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF652QNV 6690140 ENCODE Processing Pipeline defeb83e492533ab71e9bd036f7ea0d3 https://www.encodeproject.org/files/ENCFF382SPQ/@@download/ENCFF382SPQ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF197FMQ bed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF963VRB 1821260 ENCODE Processing Pipeline 37fe86a7ec12fd65f23a4bfcb7f70d83 https://www.encodeproject.org/files/ENCFF197FMQ/@@download/ENCFF197FMQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF246ODG bigBed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF197FMQ 4167357 ENCODE Processing Pipeline f764790fbed2a43e47fda1fda256685c https://www.encodeproject.org/files/ENCFF246ODG/@@download/ENCFF246ODG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF652QNV bed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF713WNF, ENCFF963VRB 2430332 ENCODE Processing Pipeline b341a0907f1fc3a33403c230bb4e03e3 https://www.encodeproject.org/files/ENCFF652QNV/@@download/ENCFF652QNV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF227FWX bigBed narrowPeak peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF529ZYU 4527883 ENCODE Processing Pipeline 0e36bf515d4a7afda70009285a52ee0e https://www.encodeproject.org/files/ENCFF227FWX/@@download/ENCFF227FWX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF701OFC bigWig signal p-value ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF713WNF, ENCFF963VRB 905459722 ENCODE Processing Pipeline ae6e3756dcffe453fc721eaf4a03d171 https://www.encodeproject.org/files/ENCFF701OFC/@@download/ENCFF701OFC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF912UNL bigWig fold change over control ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF713WNF 577163757 ENCODE Processing Pipeline bd6975b2da4825b551f7462420c4e2bf https://www.encodeproject.org/files/ENCFF912UNL/@@download/ENCFF912UNL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF546IUI bed narrowPeak replicated peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF197FMQ, ENCFF529ZYU, ENCFF652QNV 1659472 ENCODE Processing Pipeline 22040a3be226f683b17d931fbfd63316 https://www.encodeproject.org/files/ENCFF546IUI/@@download/ENCFF546IUI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF414QQR bigBed narrowPeak replicated peaks ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF546IUI 3710882 ENCODE Processing Pipeline a4a2f88376aab37f71632b4e530ea00a https://www.encodeproject.org/files/ENCFF414QQR/@@download/ENCFF414QQR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF880JWE bigWig fold change over control ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF963VRB 606531904 ENCODE Processing Pipeline 88177a817a09e1628e9dc6045fe0e44c https://www.encodeproject.org/files/ENCFF880JWE/@@download/ENCFF880JWE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF923TVC bigWig fold change over control ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF713WNF, ENCFF963VRB 1104832197 ENCODE Processing Pipeline 0073867c6d4052345513dd8cd0a2ccf3 https://www.encodeproject.org/files/ENCFF923TVC/@@download/ENCFF923TVC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF002AQY fastq reads ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1640254632 Bing Ren, UCSD ccbfa4002dc68a121100210bcafc67f8 SRA:SRR3651532 https://www.encodeproject.org/files/ENCFF002AQY/@@download/ENCFF002AQY.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF002ARA fastq reads ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2461086036 Bing Ren, UCSD d94516069e13e4723b694ed577a6e093 SRA:SRR3651533 https://www.encodeproject.org/files/ENCFF002ARA/@@download/ENCFF002ARA.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF725CKM bam unfiltered alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQY, ENCFF806TVZ 1878936261 ENCODE Processing Pipeline c827a6bb6aff69c374718833e51e8256 https://www.encodeproject.org/files/ENCFF725CKM/@@download/ENCFF725CKM.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF056YGF bam unfiltered alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARA, ENCFF806TVZ 2788706829 ENCODE Processing Pipeline f74e19df0c0b7d95ed451897b768345e https://www.encodeproject.org/files/ENCFF056YGF/@@download/ENCFF056YGF.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF184XIW bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARA, ENCFF806TVZ 1936960724 ENCODE Processing Pipeline d264f0d878547a86e098dc260af45b0e https://www.encodeproject.org/files/ENCFF184XIW/@@download/ENCFF184XIW.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF175WRM bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQY, ENCFF806TVZ 1338823510 ENCODE Processing Pipeline b6858534708120153c2df9b54834759e https://www.encodeproject.org/files/ENCFF175WRM/@@download/ENCFF175WRM.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF361JEX bam unfiltered alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQY, ENCFF018NEO 1881223729 ENCODE Processing Pipeline 0dcd45fc52e5159620bf483f29b192cf https://www.encodeproject.org/files/ENCFF361JEX/@@download/ENCFF361JEX.bam mm10 released insufficient read depth for broad peaks control ENCFF846PNX bam unfiltered alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ARA, ENCFF018NEO 2791606701 ENCODE Processing Pipeline 6e1b269b7a1bce23ecfe81d9a141be91 https://www.encodeproject.org/files/ENCFF846PNX/@@download/ENCFF846PNX.bam mm10 released insufficient read depth for broad peaks control ENCFF780NAD bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQY, ENCFF018NEO 1338466184 ENCODE Processing Pipeline 8f4a6820d39c2aa263f253742d54d642 https://www.encodeproject.org/files/ENCFF780NAD/@@download/ENCFF780NAD.bam mm10 released insufficient read depth for broad peaks control ENCFF260TOA bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ARA, ENCFF018NEO 1936436343 ENCODE Processing Pipeline 549faa595ce3d55bfcd4be742853a2e2 https://www.encodeproject.org/files/ENCFF260TOA/@@download/ENCFF260TOA.bam mm10 released insufficient read depth for broad peaks control ENCFF239WXD bam unfiltered alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARA, ENCFF018NEO 2265759926 ENCODE Processing Pipeline f3550bbf776ce19c3e7292a1ddd5d9f5 https://www.encodeproject.org/files/ENCFF239WXD/@@download/ENCFF239WXD.bam mm10 released insufficient read depth for broad peaks control ENCFF597OQI bam unfiltered alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQY, ENCFF018NEO 1530460039 ENCODE Processing Pipeline 6dd8d8294df76395259a2c740342136a https://www.encodeproject.org/files/ENCFF597OQI/@@download/ENCFF597OQI.bam mm10 released insufficient read depth for broad peaks control ENCFF190RFD bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQY, ENCFF018NEO 1021821580 ENCODE Processing Pipeline 9c36735d80db22dbc8cc444f0a42a9e0 https://www.encodeproject.org/files/ENCFF190RFD/@@download/ENCFF190RFD.bam mm10 released insufficient read depth for broad peaks control ENCFF523XKB bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARA, ENCFF018NEO 1473116983 ENCODE Processing Pipeline 3739153d2d2552a3807497cdcde73453 https://www.encodeproject.org/files/ENCFF523XKB/@@download/ENCFF523XKB.bam mm10 released insufficient read depth for broad peaks control ENCFF836EIX fastq reads ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 50 single-ended 2596383456 Bing Ren, UCSD 5654f54f5219105ad491698cb7071560 SRA:SRR3651831 https://www.encodeproject.org/files/ENCFF836EIX/@@download/ENCFF836EIX.fastq.gz Illumina HiSeq 2000 /files/ENCFF879XFV/ released inconsistent platforms ENCFF850EOI fastq reads ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 50 single-ended 2386429683 Bing Ren, UCSD bb4aa7befa4ce4e42221c8fcbec39f55 SRA:SRR3651832 https://www.encodeproject.org/files/ENCFF850EOI/@@download/ENCFF850EOI.fastq.gz Illumina HiSeq 2000 /files/ENCFF076IRY/ released inconsistent platforms ENCFF771DGP bam alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF806TVZ, ENCFF850EOI 1697156434 ENCODE Processing Pipeline ad60a53b851db339fe003a522c95d085 https://www.encodeproject.org/files/ENCFF771DGP/@@download/ENCFF771DGP.bam mm10-minimal archived inconsistent platforms ENCFF978LGO bam alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF806TVZ, ENCFF836EIX 1861209205 ENCODE Processing Pipeline b1a0bb0b9119df8aa05b3f35fcea8531 https://www.encodeproject.org/files/ENCFF978LGO/@@download/ENCFF978LGO.bam mm10-minimal archived inconsistent platforms ENCFF118ZCP bed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF245YVK, ENCFF771DGP 149615 ENCODE Processing Pipeline 4f79c83150555169a404c35a0e89ff89 https://www.encodeproject.org/files/ENCFF118ZCP/@@download/ENCFF118ZCP.bed.gz mm10-minimal archived inconsistent platforms ENCFF221DGR bed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF245YVK, ENCFF582LOU, ENCFF771DGP, ENCFF978LGO 267824 ENCODE Processing Pipeline f6224026250d0288359184308d690b0e https://www.encodeproject.org/files/ENCFF221DGR/@@download/ENCFF221DGR.bed.gz mm10-minimal archived inconsistent platforms ENCFF258LFR bigBed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF091DCI 441180 ENCODE Processing Pipeline 3bd9ec52a608adc7dfe73be84a84a2e9 https://www.encodeproject.org/files/ENCFF258LFR/@@download/ENCFF258LFR.bigBed mm10-minimal archived inconsistent platforms ENCFF914WLV bigWig signal p-value ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF245YVK, ENCFF771DGP 616655866 ENCODE Processing Pipeline 9bf71f6bbad1fbb873ef585fce1b70f3 https://www.encodeproject.org/files/ENCFF914WLV/@@download/ENCFF914WLV.bigWig mm10-minimal archived inconsistent platforms ENCFF038EIQ bigWig signal p-value ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF582LOU, ENCFF978LGO 564290630 ENCODE Processing Pipeline 984ae7190f6e1b352c7f129441f32fe0 https://www.encodeproject.org/files/ENCFF038EIQ/@@download/ENCFF038EIQ.bigWig mm10-minimal archived inconsistent platforms ENCFF091DCI bed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF582LOU, ENCFF978LGO 232358 ENCODE Processing Pipeline 7368e65ae3283e83afdfa306989b47a9 https://www.encodeproject.org/files/ENCFF091DCI/@@download/ENCFF091DCI.bed.gz mm10-minimal archived inconsistent platforms ENCFF153RPT bigBed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF118ZCP 318603 ENCODE Processing Pipeline 227ccf70f709d3210ec1b229c2016c43 https://www.encodeproject.org/files/ENCFF153RPT/@@download/ENCFF153RPT.bigBed mm10-minimal archived inconsistent platforms ENCFF922NCA bigBed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF221DGR 615209 ENCODE Processing Pipeline 183a712b2dbfa0c37f0fb955fe2b510d https://www.encodeproject.org/files/ENCFF922NCA/@@download/ENCFF922NCA.bigBed mm10-minimal archived inconsistent platforms ENCFF434HWG bigWig signal p-value ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF245YVK, ENCFF582LOU, ENCFF771DGP, ENCFF978LGO 1240396030 ENCODE Processing Pipeline ac21ca569d86a02f0482e13b4f316a1a https://www.encodeproject.org/files/ENCFF434HWG/@@download/ENCFF434HWG.bigWig mm10-minimal archived inconsistent platforms ENCFF704CVP bigWig fold change over control ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF582LOU, ENCFF978LGO 696487486 ENCODE Processing Pipeline a57508a2d0b82b99c341739940629273 https://www.encodeproject.org/files/ENCFF704CVP/@@download/ENCFF704CVP.bigWig mm10-minimal archived inconsistent platforms ENCFF342STC bigWig fold change over control ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF245YVK, ENCFF582LOU, ENCFF771DGP, ENCFF978LGO 1222060828 ENCODE Processing Pipeline 7c17543f81d4770dba6927c7b0b979f8 https://www.encodeproject.org/files/ENCFF342STC/@@download/ENCFF342STC.bigWig mm10-minimal archived inconsistent platforms ENCFF614GLO bed narrowPeak replicated peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF091DCI, ENCFF118ZCP, ENCFF221DGR 39076 ENCODE Processing Pipeline d1ae44a6ad21db25aa43a89f6ad9fa83 https://www.encodeproject.org/files/ENCFF614GLO/@@download/ENCFF614GLO.bed.gz mm10-minimal archived inconsistent platforms ENCFF421ITI bigWig fold change over control ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF245YVK, ENCFF771DGP 620432463 ENCODE Processing Pipeline 1d97b8df57624bad3ef5dda100cb58b6 https://www.encodeproject.org/files/ENCFF421ITI/@@download/ENCFF421ITI.bigWig mm10-minimal archived inconsistent platforms ENCFF828AMK bigBed narrowPeak replicated peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF614GLO 189810 ENCODE Processing Pipeline b1ac514bbbaee2495451c01a2e622439 https://www.encodeproject.org/files/ENCFF828AMK/@@download/ENCFF828AMK.bigBed mm10-minimal archived inconsistent platforms ENCFF314IMU bam unfiltered alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF836EIX 3160738619 ENCODE Processing Pipeline 580b327e8877fff0a81e8a62d481e68a https://www.encodeproject.org/files/ENCFF314IMU/@@download/ENCFF314IMU.bam mm10 released inconsistent platforms ENCFF170HGL bam unfiltered alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF850EOI 2909447751 ENCODE Processing Pipeline 383451dba85ebdaaadeaffb6b6a29b62 https://www.encodeproject.org/files/ENCFF170HGL/@@download/ENCFF170HGL.bam mm10 released inconsistent platforms ENCFF940XYU bam alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF850EOI 1696430330 ENCODE Processing Pipeline 3e8c02cd9f61f620154c4b1367fbdff9 https://www.encodeproject.org/files/ENCFF940XYU/@@download/ENCFF940XYU.bam mm10 released inconsistent platforms ENCFF363KUX bam alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF836EIX 1860432808 ENCODE Processing Pipeline 13783aaaf1eec47e9039cf0e8b4c68b8 https://www.encodeproject.org/files/ENCFF363KUX/@@download/ENCFF363KUX.bam mm10 released inconsistent platforms ENCFF302HDX bed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF245OIS, ENCFF363KUX 220640 ENCODE Processing Pipeline 9315ad4276a025af7e84ea233084b6c9 https://www.encodeproject.org/files/ENCFF302HDX/@@download/ENCFF302HDX.bed.gz mm10 released inconsistent platforms ENCFF532SPG bed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF389YBT, ENCFF940XYU 149613 ENCODE Processing Pipeline c45837365da2291f31bfb757291145ad https://www.encodeproject.org/files/ENCFF532SPG/@@download/ENCFF532SPG.bed.gz mm10 released inconsistent platforms ENCFF031RZR bigBed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF302HDX 427892 ENCODE Processing Pipeline d408fa3636d19f1528b30b06691a631f https://www.encodeproject.org/files/ENCFF031RZR/@@download/ENCFF031RZR.bigBed mm10 released inconsistent platforms ENCFF057HWO bed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF245OIS, ENCFF363KUX, ENCFF389YBT, ENCFF940XYU 301241 ENCODE Processing Pipeline bf40d8e5f89dd1a5b3d3690cc8afc3c6 https://www.encodeproject.org/files/ENCFF057HWO/@@download/ENCFF057HWO.bed.gz mm10 released inconsistent platforms ENCFF145EEK bigBed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF532SPG 322488 ENCODE Processing Pipeline 15777993184475781ec445c0521bdc5c https://www.encodeproject.org/files/ENCFF145EEK/@@download/ENCFF145EEK.bigBed mm10 released inconsistent platforms ENCFF784FJT bigBed narrowPeak peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF057HWO 677386 ENCODE Processing Pipeline 6a3a9cd77b161522a155c7ac0e4ec4f9 https://www.encodeproject.org/files/ENCFF784FJT/@@download/ENCFF784FJT.bigBed mm10 released inconsistent platforms ENCFF841TJE bigWig signal p-value ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF245OIS, ENCFF363KUX 747040746 ENCODE Processing Pipeline 3bd8aae27a133e09a3d53608486bd27d https://www.encodeproject.org/files/ENCFF841TJE/@@download/ENCFF841TJE.bigWig mm10 released inconsistent platforms ENCFF698XEB bigWig signal p-value ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF389YBT, ENCFF940XYU 621914333 ENCODE Processing Pipeline 3e3cef41973cfdfc018d38b57e503161 https://www.encodeproject.org/files/ENCFF698XEB/@@download/ENCFF698XEB.bigWig mm10 released inconsistent platforms ENCFF226WLE bigWig signal p-value ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF245OIS, ENCFF363KUX, ENCFF389YBT, ENCFF940XYU 1193299472 ENCODE Processing Pipeline c6643db79658206e8ec770e4b5858070 https://www.encodeproject.org/files/ENCFF226WLE/@@download/ENCFF226WLE.bigWig mm10 released inconsistent platforms ENCFF565DPV bigWig fold change over control ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF245OIS, ENCFF363KUX 711780017 ENCODE Processing Pipeline 553a660d907713d64a553e7e39de90ff https://www.encodeproject.org/files/ENCFF565DPV/@@download/ENCFF565DPV.bigWig mm10 released inconsistent platforms ENCFF558FPM bigWig fold change over control ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF389YBT, ENCFF940XYU 686412516 ENCODE Processing Pipeline 581966aa8fbe23760bf4f76b79791d14 https://www.encodeproject.org/files/ENCFF558FPM/@@download/ENCFF558FPM.bigWig mm10 released inconsistent platforms ENCFF776ZXU bigWig fold change over control ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF245OIS, ENCFF363KUX, ENCFF389YBT, ENCFF940XYU 1280452246 ENCODE Processing Pipeline e7a388faa7cdb1b4a94c0aa250034f73 https://www.encodeproject.org/files/ENCFF776ZXU/@@download/ENCFF776ZXU.bigWig mm10 released inconsistent platforms ENCFF998XVR bed narrowPeak replicated peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF057HWO, ENCFF302HDX, ENCFF532SPG 40432 ENCODE Processing Pipeline 7e68799cd33eaf2b2de77af72e436af5 https://www.encodeproject.org/files/ENCFF998XVR/@@download/ENCFF998XVR.bed.gz mm10 released inconsistent platforms ENCFF315PPK bigBed narrowPeak replicated peaks ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF998XVR 196671 ENCODE Processing Pipeline 87209faf5afde5d33790f34f27e2b01d https://www.encodeproject.org/files/ENCFF315PPK/@@download/ENCFF315PPK.bigBed mm10 released inconsistent platforms ENCFF678FKI fastq reads ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2039842383 Bing Ren, UCSD 535a41930dc957a2005445c62ae5f406 SRA:SRR3653300 https://www.encodeproject.org/files/ENCFF678FKI/@@download/ENCFF678FKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF349SWN fastq reads ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 1837237095 Bing Ren, UCSD 5bbd160c6c8005e389e7287b72b33762 SRA:SRR3653301 https://www.encodeproject.org/files/ENCFF349SWN/@@download/ENCFF349SWN.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF248UKT bam alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF349SWN, ENCFF806TVZ 1363267054 ENCODE Processing Pipeline 1e3a67e946af772fb5d32c43e783a694 https://www.encodeproject.org/files/ENCFF248UKT/@@download/ENCFF248UKT.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF811JGW bam alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF678FKI, ENCFF806TVZ 1305988478 ENCODE Processing Pipeline d167f48f919075e63c9a3229e13c8e7e https://www.encodeproject.org/files/ENCFF811JGW/@@download/ENCFF811JGW.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF774CEV bed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF455EJT, ENCFF811JGW 830996 ENCODE Processing Pipeline c17ea044ee88f6ec1b51ba26e1aa4515 https://www.encodeproject.org/files/ENCFF774CEV/@@download/ENCFF774CEV.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF126RLH bed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF248UKT, ENCFF455EJT, ENCFF811JGW, ENCFF844LBC 891206 ENCODE Processing Pipeline 9c22b32782f29db9ede73b5e0c2e5290 https://www.encodeproject.org/files/ENCFF126RLH/@@download/ENCFF126RLH.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF977IOS bigBed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF480AEH 2674002 ENCODE Processing Pipeline 2db7a76af3e7d956f7b2f29029525b35 https://www.encodeproject.org/files/ENCFF977IOS/@@download/ENCFF977IOS.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF480AEH bed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF248UKT, ENCFF844LBC 863941 ENCODE Processing Pipeline 4900d4a0bbb5e2fafb95a06745a63866 https://www.encodeproject.org/files/ENCFF480AEH/@@download/ENCFF480AEH.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF515IYD bigBed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF774CEV 2594494 ENCODE Processing Pipeline 977c763571460d69efa8f6743d9ecf0c https://www.encodeproject.org/files/ENCFF515IYD/@@download/ENCFF515IYD.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF161TXV bigWig signal p-value ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF455EJT, ENCFF811JGW 567629662 ENCODE Processing Pipeline 6c43c5ded61c25940f939bf89a88c8ea https://www.encodeproject.org/files/ENCFF161TXV/@@download/ENCFF161TXV.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF819TUZ bigBed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF126RLH 2747679 ENCODE Processing Pipeline b9f8607252deb3fde94424090c4a4ca5 https://www.encodeproject.org/files/ENCFF819TUZ/@@download/ENCFF819TUZ.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF127PRI bigWig signal p-value ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF248UKT, ENCFF844LBC 400869498 ENCODE Processing Pipeline 4a5e18a38f1db9f3787b0419d17bd230 https://www.encodeproject.org/files/ENCFF127PRI/@@download/ENCFF127PRI.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF599OZP bigWig signal p-value ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF248UKT, ENCFF455EJT, ENCFF811JGW, ENCFF844LBC 776782532 ENCODE Processing Pipeline 0562b695975ee9984fa2a5eadbf6b713 https://www.encodeproject.org/files/ENCFF599OZP/@@download/ENCFF599OZP.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF530NTH bigWig fold change over control ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF455EJT, ENCFF811JGW 461660317 ENCODE Processing Pipeline bb85772bf06ac7d1306628ca44d00f5c https://www.encodeproject.org/files/ENCFF530NTH/@@download/ENCFF530NTH.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF886YEZ bigWig fold change over control ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF248UKT, ENCFF844LBC 461767517 ENCODE Processing Pipeline f77acc225fd7ba5eee623f941907e209 https://www.encodeproject.org/files/ENCFF886YEZ/@@download/ENCFF886YEZ.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF684LEI bed narrowPeak replicated peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF126RLH, ENCFF480AEH, ENCFF774CEV 980400 ENCODE Processing Pipeline 4e6fb9b6c0c7834b8c50da7094eba040 https://www.encodeproject.org/files/ENCFF684LEI/@@download/ENCFF684LEI.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF776IFD bigBed narrowPeak replicated peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF684LEI 2259102 ENCODE Processing Pipeline 1716291050fc9b575af5b2c81fa24559 https://www.encodeproject.org/files/ENCFF776IFD/@@download/ENCFF776IFD.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF117XAF bigWig fold change over control ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF248UKT, ENCFF455EJT, ENCFF811JGW, ENCFF844LBC 882649770 ENCODE Processing Pipeline 946e09f50ece778861e742e6c38b6300 https://www.encodeproject.org/files/ENCFF117XAF/@@download/ENCFF117XAF.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF235RCR bam unfiltered alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF678FKI 2217150754 ENCODE Processing Pipeline a3bc8e66128022d020225376ca4c4fa5 https://www.encodeproject.org/files/ENCFF235RCR/@@download/ENCFF235RCR.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF088MJQ bam unfiltered alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF349SWN 2035819320 ENCODE Processing Pipeline d8af4e001feb7ee786357d68174d2f2a https://www.encodeproject.org/files/ENCFF088MJQ/@@download/ENCFF088MJQ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF334XPU bam alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF678FKI 1305780962 ENCODE Processing Pipeline 3d63c6b5302a15ae9c10607f5400ddec https://www.encodeproject.org/files/ENCFF334XPU/@@download/ENCFF334XPU.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF823ZDR bam alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF349SWN 1363049371 ENCODE Processing Pipeline 1ade40e4b30fb473eae862a949d67a4d https://www.encodeproject.org/files/ENCFF823ZDR/@@download/ENCFF823ZDR.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF164HVV bed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF334XPU 843888 ENCODE Processing Pipeline 5c185f572953f01795c9a0c542dbade2 https://www.encodeproject.org/files/ENCFF164HVV/@@download/ENCFF164HVV.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF768JHU bigBed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF164HVV 2623042 ENCODE Processing Pipeline f137ee08ccbde520798db196d5cad344 https://www.encodeproject.org/files/ENCFF768JHU/@@download/ENCFF768JHU.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF103AWE bed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF823ZDR 882983 ENCODE Processing Pipeline f6dc2fdc333d953e9aba3bea86d46fa7 https://www.encodeproject.org/files/ENCFF103AWE/@@download/ENCFF103AWE.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF068AVY bigBed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF103AWE 2717513 ENCODE Processing Pipeline e3d026ae761b837cf08d19946854fafa https://www.encodeproject.org/files/ENCFF068AVY/@@download/ENCFF068AVY.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF891IZT bed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF334XPU, ENCFF823ZDR 918585 ENCODE Processing Pipeline 3cc39bf8b44bd5fcd48b44c81faf3da9 https://www.encodeproject.org/files/ENCFF891IZT/@@download/ENCFF891IZT.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF029ZUP bigBed narrowPeak peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF891IZT 2807767 ENCODE Processing Pipeline a0c784683faca8879dd1f13100d3d1fa https://www.encodeproject.org/files/ENCFF029ZUP/@@download/ENCFF029ZUP.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF441NYB bigWig signal p-value ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF334XPU 487889601 ENCODE Processing Pipeline bdec32d95a2861eede24d7ed60405c31 https://www.encodeproject.org/files/ENCFF441NYB/@@download/ENCFF441NYB.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF441JTA bigWig signal p-value ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF823ZDR 636498900 ENCODE Processing Pipeline 348ed4cb9bd1d416127c34fda0909791 https://www.encodeproject.org/files/ENCFF441JTA/@@download/ENCFF441JTA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF789JQE bigWig signal p-value ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF334XPU, ENCFF823ZDR 817200766 ENCODE Processing Pipeline 9917d6f1480922c24125f14b28646f04 https://www.encodeproject.org/files/ENCFF789JQE/@@download/ENCFF789JQE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF195TIH bigWig fold change over control ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF334XPU 497293555 ENCODE Processing Pipeline 621cbd74d90f71996aabbe648e60ab17 https://www.encodeproject.org/files/ENCFF195TIH/@@download/ENCFF195TIH.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF541SYX bigWig fold change over control ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF823ZDR 534530563 ENCODE Processing Pipeline 0dd7b27470588d1d704cfe4c097f055e https://www.encodeproject.org/files/ENCFF541SYX/@@download/ENCFF541SYX.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF672TTE bigWig fold change over control ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF334XPU, ENCFF823ZDR 1005736994 ENCODE Processing Pipeline a3f33885cdf6d28e787514d6abe100f1 https://www.encodeproject.org/files/ENCFF672TTE/@@download/ENCFF672TTE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF186IVQ bed narrowPeak replicated peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF103AWE, ENCFF164HVV, ENCFF891IZT 990198 ENCODE Processing Pipeline b93ecf9dd8b3dad3307c7fd986542259 https://www.encodeproject.org/files/ENCFF186IVQ/@@download/ENCFF186IVQ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF046NDM bigBed narrowPeak replicated peaks ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF186IVQ 2258247 ENCODE Processing Pipeline f9a9d078ee3bdfa191d4f5da626a9133 https://www.encodeproject.org/files/ENCFF046NDM/@@download/ENCFF046NDM.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF002AIX fastq reads ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1339009720 Bing Ren, UCSD 2a523eeb0bbe08877b4b0b103870e4ca SRA:SRR3653377 https://www.encodeproject.org/files/ENCFF002AIX/@@download/ENCFF002AIX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF002AIZ fastq reads ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1447836440 Bing Ren, UCSD c4adf08d919b65dd4289d8b89cba6f5f SRA:SRR3653376 https://www.encodeproject.org/files/ENCFF002AIZ/@@download/ENCFF002AIZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APR/ released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF841FZL bam alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIX, ENCFF806TVZ 1224328960 ENCODE Processing Pipeline 76ccdf5901720cbd1b7963406ad64e8b https://www.encodeproject.org/files/ENCFF841FZL/@@download/ENCFF841FZL.bam mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF552PFZ bam alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIZ, ENCFF806TVZ 1292455532 ENCODE Processing Pipeline 7701f2d5d4566fd397926df1bc1a18c3 https://www.encodeproject.org/files/ENCFF552PFZ/@@download/ENCFF552PFZ.bam mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF875PSD bed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF552PFZ, ENCFF893KXG 2529271 ENCODE Processing Pipeline adcbf808c3ad7b6a79b54c73ed0a641b https://www.encodeproject.org/files/ENCFF875PSD/@@download/ENCFF875PSD.bed.gz mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF753CHQ bed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF552PFZ, ENCFF841FZL, ENCFF893KXG 2492612 ENCODE Processing Pipeline cd252633c62c761203bdc0e5512a6526 https://www.encodeproject.org/files/ENCFF753CHQ/@@download/ENCFF753CHQ.bed.gz mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF003YDW bigBed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF875PSD 5623076 ENCODE Processing Pipeline 07dad872fd046d1f24466cc6adc76629 https://www.encodeproject.org/files/ENCFF003YDW/@@download/ENCFF003YDW.bigBed mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF618OSD bed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF841FZL, ENCFF893KXG 2078737 ENCODE Processing Pipeline 4db1f9a3f88df0f151e62735af288605 https://www.encodeproject.org/files/ENCFF618OSD/@@download/ENCFF618OSD.bed.gz mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF375MJZ bigBed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF753CHQ 6977971 ENCODE Processing Pipeline b675c0b4e5c50b2faa38abed77875db2 https://www.encodeproject.org/files/ENCFF375MJZ/@@download/ENCFF375MJZ.bigBed mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF769YCV bigWig signal p-value ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF841FZL, ENCFF893KXG 703426263 ENCODE Processing Pipeline c84175b7b968c9b2be1671af070fad39 https://www.encodeproject.org/files/ENCFF769YCV/@@download/ENCFF769YCV.bigWig mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF303CQN bigBed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF618OSD 4764769 ENCODE Processing Pipeline 57f6f302bb8b1c1269a846b8dcf1fa25 https://www.encodeproject.org/files/ENCFF303CQN/@@download/ENCFF303CQN.bigBed mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF706EJB bigWig signal p-value ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF552PFZ, ENCFF893KXG 708409874 ENCODE Processing Pipeline 4e7008f73fe7e7e7f966d24d260100d7 https://www.encodeproject.org/files/ENCFF706EJB/@@download/ENCFF706EJB.bigWig mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF956ZKX bigWig signal p-value ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF552PFZ, ENCFF841FZL, ENCFF893KXG 938638703 ENCODE Processing Pipeline f5ca78f142003ee334cbb4cce1a4369d https://www.encodeproject.org/files/ENCFF956ZKX/@@download/ENCFF956ZKX.bigWig mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF067JYK bigWig fold change over control ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF126APW, ENCFF552PFZ, ENCFF893KXG 711220805 ENCODE Processing Pipeline 9f21f37ae5c2f3a15f4ef2019ac49bb3 https://www.encodeproject.org/files/ENCFF067JYK/@@download/ENCFF067JYK.bigWig mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF153HLC bigWig fold change over control ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF841FZL, ENCFF893KXG 688466260 ENCODE Processing Pipeline 6fad90507385de3bf8a675e2d685e1f0 https://www.encodeproject.org/files/ENCFF153HLC/@@download/ENCFF153HLC.bigWig mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF011MII bigWig fold change over control ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF552PFZ, ENCFF841FZL, ENCFF893KXG 1055165192 ENCODE Processing Pipeline 7b250079a9e2a3bfaa34d75d3a2dbffb https://www.encodeproject.org/files/ENCFF011MII/@@download/ENCFF011MII.bigWig mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF008JAK bed narrowPeak replicated peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF618OSD, ENCFF753CHQ, ENCFF875PSD 1849229 ENCODE Processing Pipeline 11fdf5407e6a959412ba7036b20741de https://www.encodeproject.org/files/ENCFF008JAK/@@download/ENCFF008JAK.bed.gz mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF552DCY bigBed narrowPeak replicated peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF008JAK 4279844 ENCODE Processing Pipeline 1126ec2c5f89cb92fad73b27611ba8ec https://www.encodeproject.org/files/ENCFF552DCY/@@download/ENCFF552DCY.bigBed mm10-minimal archived low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF915TJY bam unfiltered alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIZ, ENCFF018NEO 1670008376 ENCODE Processing Pipeline 750fbd822972ce747d49f860f2084b48 https://www.encodeproject.org/files/ENCFF915TJY/@@download/ENCFF915TJY.bam mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF857PWM bam unfiltered alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIX, ENCFF018NEO 1556436487 ENCODE Processing Pipeline 4078dd476f14368e3aa85f4ce147de5c https://www.encodeproject.org/files/ENCFF857PWM/@@download/ENCFF857PWM.bam mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF820MBE bam alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIZ, ENCFF018NEO 1292255099 ENCODE Processing Pipeline 9302a5eed971b9b038988efc25ddfdcb https://www.encodeproject.org/files/ENCFF820MBE/@@download/ENCFF820MBE.bam mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF917GUV bam alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIX, ENCFF018NEO 1224138750 ENCODE Processing Pipeline cb37a2597f255de8c9aa1581e026b98a https://www.encodeproject.org/files/ENCFF917GUV/@@download/ENCFF917GUV.bam mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF441SUA bed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF820MBE, ENCFF917GUV, ENCFF921XQX 2493722 ENCODE Processing Pipeline 6741b17e09e1f56f043d8082b2a2de1e https://www.encodeproject.org/files/ENCFF441SUA/@@download/ENCFF441SUA.bed.gz mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF092NEH bigBed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF168YIJ 4769440 ENCODE Processing Pipeline 79f48ccc2f0c2758197aeff0a5dd3a8e https://www.encodeproject.org/files/ENCFF092NEH/@@download/ENCFF092NEH.bigBed mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF168YIJ bed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255XXC, ENCFF917GUV, ENCFF921XQX 2082542 ENCODE Processing Pipeline f5249d37ec03dfd7dfdeca99aa5516e2 https://www.encodeproject.org/files/ENCFF168YIJ/@@download/ENCFF168YIJ.bed.gz mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF551CHU bed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF820MBE 1665793 ENCODE Processing Pipeline 4092f58dcb3211700925b45189069c05 https://www.encodeproject.org/files/ENCFF551CHU/@@download/ENCFF551CHU.bed.gz mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF430WNP bigBed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF551CHU 3844610 ENCODE Processing Pipeline 74d5443a49202c4a2cce3aa976a9d5ed https://www.encodeproject.org/files/ENCFF430WNP/@@download/ENCFF430WNP.bigBed mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF594RPG bigBed narrowPeak peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF441SUA 6983947 ENCODE Processing Pipeline 0b6c6b993d652aed13d01c1afd636da3 https://www.encodeproject.org/files/ENCFF594RPG/@@download/ENCFF594RPG.bigBed mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF387BUZ bigWig signal p-value ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255XXC, ENCFF917GUV, ENCFF921XQX 601083458 ENCODE Processing Pipeline 15a6511e1450083ea2af621d6967cacc https://www.encodeproject.org/files/ENCFF387BUZ/@@download/ENCFF387BUZ.bigWig mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF557RZX bigWig signal p-value ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF820MBE 463524865 ENCODE Processing Pipeline d7ebb62ff6db8c499811813ed00490a2 https://www.encodeproject.org/files/ENCFF557RZX/@@download/ENCFF557RZX.bigWig mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF900DOB bigWig signal p-value ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF820MBE, ENCFF917GUV, ENCFF921XQX 938520534 ENCODE Processing Pipeline f06c58860c733a364a05736facea140e https://www.encodeproject.org/files/ENCFF900DOB/@@download/ENCFF900DOB.bigWig mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF309DNI bigWig fold change over control ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF255XXC, ENCFF917GUV, ENCFF921XQX 691975461 ENCODE Processing Pipeline 8703cc10afdf3861d24ae84e720339c8 https://www.encodeproject.org/files/ENCFF309DNI/@@download/ENCFF309DNI.bigWig mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF314URO bigWig fold change over control ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF820MBE 524666715 ENCODE Processing Pipeline a8836a728fa7087590e60b79402edadf https://www.encodeproject.org/files/ENCFF314URO/@@download/ENCFF314URO.bigWig mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF230BUR bigWig fold change over control ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF820MBE, ENCFF917GUV, ENCFF921XQX 1055586331 ENCODE Processing Pipeline 2783c62dbcc1200c62e1e381655cb3e2 https://www.encodeproject.org/files/ENCFF230BUR/@@download/ENCFF230BUR.bigWig mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF027YKW bed narrowPeak replicated peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF168YIJ, ENCFF441SUA, ENCFF551CHU 1698678 ENCODE Processing Pipeline efc98f408a1f68e9946416e902d9901f https://www.encodeproject.org/files/ENCFF027YKW/@@download/ENCFF027YKW.bed.gz mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF425BQO bigBed narrowPeak replicated peaks ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF027YKW 3984199 ENCODE Processing Pipeline 84e16855dae59fce07f7e9b916b17efc https://www.encodeproject.org/files/ENCFF425BQO/@@download/ENCFF425BQO.bigBed mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF002AIB fastq reads ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1424245075 Bing Ren, UCSD d587f9b84d1627348451a135a0ddf649 SRA:SRR3652893 https://www.encodeproject.org/files/ENCFF002AIB/@@download/ENCFF002AIB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF002AIF fastq reads ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1602552772 Bing Ren, UCSD fbef047cce8362cdc7f4071de57e8e73 SRA:SRR3652894 https://www.encodeproject.org/files/ENCFF002AIF/@@download/ENCFF002AIF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQM/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF268FRF bam alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIF, ENCFF806TVZ 1181167160 ENCODE Processing Pipeline bc46757799e57286148d862a6b7f58fc https://www.encodeproject.org/files/ENCFF268FRF/@@download/ENCFF268FRF.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF903NTN bam alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIB, ENCFF806TVZ 1125315665 ENCODE Processing Pipeline fd5f84c3f9f3511f36470d58acc728f1 https://www.encodeproject.org/files/ENCFF903NTN/@@download/ENCFF903NTN.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF667YEF bed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF790TLG, ENCFF903NTN, ENCFF988JQL 2661854 ENCODE Processing Pipeline bf5e974ab826ff9debaaaba3f633e9b3 https://www.encodeproject.org/files/ENCFF667YEF/@@download/ENCFF667YEF.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF876KLE bed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF268FRF, ENCFF790TLG, ENCFF988JQL 2771156 ENCODE Processing Pipeline a8b1942ce702d711ab15ab2290441115 https://www.encodeproject.org/files/ENCFF876KLE/@@download/ENCFF876KLE.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF862EAP bed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF268FRF, ENCFF790TLG, ENCFF903NTN, ENCFF988JQL 2439654 ENCODE Processing Pipeline 6e3a3d0d2fe881b2edd0dd49a06a4108 https://www.encodeproject.org/files/ENCFF862EAP/@@download/ENCFF862EAP.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF282UBA bigBed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF667YEF 5622850 ENCODE Processing Pipeline d43b87d061bd07c6420e15fd3ebbf90c https://www.encodeproject.org/files/ENCFF282UBA/@@download/ENCFF282UBA.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF586GGY bigBed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF876KLE 5865756 ENCODE Processing Pipeline 50e66bf9a99f13a3d7745e1721f0ee98 https://www.encodeproject.org/files/ENCFF586GGY/@@download/ENCFF586GGY.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF240JVY bigBed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF862EAP 5128296 ENCODE Processing Pipeline e7ea958aea5c1e994d0c713a279998d0 https://www.encodeproject.org/files/ENCFF240JVY/@@download/ENCFF240JVY.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF400TLX bigWig signal p-value ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF790TLG, ENCFF903NTN, ENCFF988JQL 625911370 ENCODE Processing Pipeline 7e3a5f54bc501682fe81e147d69023e0 https://www.encodeproject.org/files/ENCFF400TLX/@@download/ENCFF400TLX.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF401XQJ bigWig signal p-value ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF268FRF, ENCFF790TLG, ENCFF988JQL 555195639 ENCODE Processing Pipeline d11fc7f5c0eda7c59f8e84c172d94f0a https://www.encodeproject.org/files/ENCFF401XQJ/@@download/ENCFF401XQJ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF742UQU bigWig signal p-value ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF268FRF, ENCFF790TLG, ENCFF903NTN, ENCFF988JQL 768004170 ENCODE Processing Pipeline 39e409a29ec0dfbc019051eb57b7837d https://www.encodeproject.org/files/ENCFF742UQU/@@download/ENCFF742UQU.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF196XCK bigWig fold change over control ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF790TLG, ENCFF903NTN, ENCFF988JQL 558199530 ENCODE Processing Pipeline 7f00a001e065eeb97dd40bd906a73b5c https://www.encodeproject.org/files/ENCFF196XCK/@@download/ENCFF196XCK.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF259MJT bigWig fold change over control ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF268FRF, ENCFF790TLG, ENCFF988JQL 563567332 ENCODE Processing Pipeline 5a73a214f9e7cad554787318b341a737 https://www.encodeproject.org/files/ENCFF259MJT/@@download/ENCFF259MJT.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF626WWK bigWig fold change over control ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF268FRF, ENCFF790TLG, ENCFF903NTN, ENCFF988JQL 889247523 ENCODE Processing Pipeline 47c50804a75a20b10a1195e0d540ecf9 https://www.encodeproject.org/files/ENCFF626WWK/@@download/ENCFF626WWK.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF779DCH bed narrowPeak replicated peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF667YEF, ENCFF862EAP, ENCFF876KLE 2221511 ENCODE Processing Pipeline 7232577758be9bc511b2921fa4d27900 https://www.encodeproject.org/files/ENCFF779DCH/@@download/ENCFF779DCH.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF473IKL bigBed narrowPeak replicated peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF779DCH 3895687 ENCODE Processing Pipeline 0f63c960cb4a32663dee8b94794387ee https://www.encodeproject.org/files/ENCFF473IKL/@@download/ENCFF473IKL.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF250HMU bam unfiltered alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIB, ENCFF018NEO 1635808855 ENCODE Processing Pipeline 3c5f7b85a7a1ba8957cc09185d95d08a https://www.encodeproject.org/files/ENCFF250HMU/@@download/ENCFF250HMU.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF332PWH bam unfiltered alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIF, ENCFF018NEO 1809602305 ENCODE Processing Pipeline 836f83ad78dfe736fe62b1d31bb50245 https://www.encodeproject.org/files/ENCFF332PWH/@@download/ENCFF332PWH.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF434TRS bam alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIB, ENCFF018NEO 1125065456 ENCODE Processing Pipeline 823b62536a00785405f7c53c8acdcf4b https://www.encodeproject.org/files/ENCFF434TRS/@@download/ENCFF434TRS.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF024KWU bam alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIF, ENCFF018NEO 1180909927 ENCODE Processing Pipeline 64bf0d5582737ac91c5ee2c94d81c8e7 https://www.encodeproject.org/files/ENCFF024KWU/@@download/ENCFF024KWU.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF075EBV bed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF024KWU, ENCFF621MOH 2305049 ENCODE Processing Pipeline 6977954e61276114710040ca1460e163 https://www.encodeproject.org/files/ENCFF075EBV/@@download/ENCFF075EBV.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF743ICP bed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF434TRS, ENCFF568CQH, ENCFF621MOH 2678507 ENCODE Processing Pipeline 9d046b133666552d785e52f452f5a5d8 https://www.encodeproject.org/files/ENCFF743ICP/@@download/ENCFF743ICP.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF040PXA bed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF024KWU, ENCFF434TRS, ENCFF568CQH, ENCFF621MOH 2622158 ENCODE Processing Pipeline 0dbff138ca1f05ee2cccf0151f79d6bb https://www.encodeproject.org/files/ENCFF040PXA/@@download/ENCFF040PXA.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF215MZS bigBed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF743ICP 5642589 ENCODE Processing Pipeline c935e50fc82420f421cbf224d552599f https://www.encodeproject.org/files/ENCFF215MZS/@@download/ENCFF215MZS.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF397RDO bigBed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF075EBV 4898749 ENCODE Processing Pipeline d48f5bc71a0c55abffc12e0cd2f81b1c https://www.encodeproject.org/files/ENCFF397RDO/@@download/ENCFF397RDO.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF943QFC bigBed narrowPeak peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040PXA 5471762 ENCODE Processing Pipeline 349cedb483c264c4266adb04b34107e6 https://www.encodeproject.org/files/ENCFF943QFC/@@download/ENCFF943QFC.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF555YPV bigWig signal p-value ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF434TRS, ENCFF568CQH, ENCFF621MOH 615510919 ENCODE Processing Pipeline 1134acd98b7940f21acd7e650cb173c7 https://www.encodeproject.org/files/ENCFF555YPV/@@download/ENCFF555YPV.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF500GKL bigWig signal p-value ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF024KWU, ENCFF621MOH 427791753 ENCODE Processing Pipeline 2459d8ddc5518d6cbb0b91ac094ce658 https://www.encodeproject.org/files/ENCFF500GKL/@@download/ENCFF500GKL.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF809OIV bigWig signal p-value ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF024KWU, ENCFF434TRS, ENCFF568CQH, ENCFF621MOH 750909652 ENCODE Processing Pipeline 4abe8893d6ff0ba8b667d9a4fe9e8bc6 https://www.encodeproject.org/files/ENCFF809OIV/@@download/ENCFF809OIV.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF804KOZ bigWig fold change over control ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF434TRS, ENCFF568CQH, ENCFF621MOH 550355870 ENCODE Processing Pipeline 409d34fff01729c5fe7d65bc8ccd57fb https://www.encodeproject.org/files/ENCFF804KOZ/@@download/ENCFF804KOZ.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF713AVV bigWig fold change over control ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF024KWU, ENCFF621MOH 453121233 ENCODE Processing Pipeline de896a765efe57879aca7fe9a635abb7 https://www.encodeproject.org/files/ENCFF713AVV/@@download/ENCFF713AVV.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF997AJH bigWig fold change over control ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF024KWU, ENCFF434TRS, ENCFF568CQH, ENCFF621MOH 864053904 ENCODE Processing Pipeline 4d4bf40d97680eb20745b953e2b6c320 https://www.encodeproject.org/files/ENCFF997AJH/@@download/ENCFF997AJH.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF182UTI bed narrowPeak replicated peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF040PXA, ENCFF075EBV, ENCFF743ICP 2114350 ENCODE Processing Pipeline d6aeddab5c0734167a143f1229b22b5e https://www.encodeproject.org/files/ENCFF182UTI/@@download/ENCFF182UTI.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF005GVM bigBed narrowPeak replicated peaks ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF182UTI 3714322 ENCODE Processing Pipeline e31bb6ef0fb2ee7f1f2f9dc51c75e9c4 https://www.encodeproject.org/files/ENCFF005GVM/@@download/ENCFF005GVM.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001ZQP fastq reads ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 45 single-ended 2020172004 Ross Hardison, PennState e2c38e995d900af5e47f7a34e1697a53 https://www.encodeproject.org/files/ENCFF001ZQP/@@download/ENCFF001ZQP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length experiment not submitted to GEO ENCFF001ZQQ bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 5131202717 Ross Hardison, PennState 65b5bd8deef44fc4123cb82e4e80726d https://www.encodeproject.org/files/ENCFF001ZQQ/@@download/ENCFF001ZQQ.bigWig mm9 released low read length experiment not submitted to GEO, missing derived_from ENCFF001ZQR fastq reads ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 45 single-ended 1881057794 Ross Hardison, PennState f671bc9e7c2d8675575d5fd5c34ef411 https://www.encodeproject.org/files/ENCFF001ZQR/@@download/ENCFF001ZQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length experiment not submitted to GEO ENCFF001ZQS bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 4999620112 Ross Hardison, PennState 1552038522a8099daa7da4a1ff8c6061 https://www.encodeproject.org/files/ENCFF001ZQS/@@download/ENCFF001ZQS.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF001ZQT bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 5888784483 Ross Hardison, PennState a82db6b0cde3c6211553ad882f82e514 https://www.encodeproject.org/files/ENCFF001ZQT/@@download/ENCFF001ZQT.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF001ZQU bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF001ZQP 2522573944 Ross Hardison, PennState 5aca639ae3857b1f2b2f994961e4f843 https://www.encodeproject.org/files/ENCFF001ZQU/@@download/ENCFF001ZQU.bam mm9 released low read length experiment not submitted to GEO ENCFF001ZQV bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF001ZQR 2338799625 Ross Hardison, PennState aa0db315d16d64a4a62e83c2d7f59068 https://www.encodeproject.org/files/ENCFF001ZQV/@@download/ENCFF001ZQV.bam mm9 released low read length experiment not submitted to GEO ENCFF001ZQW bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 1065186 Ross Hardison, PennState 5550327f5287c362f8ff734a757b4d48 https://www.encodeproject.org/files/ENCFF001ZQW/@@download/ENCFF001ZQW.bigBed mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF001ZQX bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 1053597 Ross Hardison, PennState d548ba882c6563468a80757cf2ebe2ea https://www.encodeproject.org/files/ENCFF001ZQX/@@download/ENCFF001ZQX.bigBed mm9 released low read length experiment not submitted to GEO, missing derived_from ENCFF001ZQY bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1093940 Ross Hardison, PennState d3956e42bcc32d1a081776c2f21f6236 https://www.encodeproject.org/files/ENCFF001ZQY/@@download/ENCFF001ZQY.bigBed mm9 released low read length experiment not submitted to GEO, missing derived_from ENCFF001ZQZ bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 4810630627 Ross Hardison, PennState 12f3a8b853b4877820a647d23d07aee2 https://www.encodeproject.org/files/ENCFF001ZQZ/@@download/ENCFF001ZQZ.bam mm9 released low read length missing derived_from, experiment not submitted to GEO ENCFF854IVF bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE ENCFF001ZQY 607503 ENCODE Consortium 18e8677418137c2a7e85687803f77cdf https://www.encodeproject.org/files/ENCFF854IVF/@@download/ENCFF854IVF.bed.gz mm9 released low read length experiment not submitted to GEO ENCFF524XKU bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 1 ENCFF001ZQW 568432 ENCODE Consortium 4dff05cead4a5d08c20d3fdc2c0a96c7 https://www.encodeproject.org/files/ENCFF524XKU/@@download/ENCFF524XKU.bed.gz mm9 released low read length experiment not submitted to GEO ENCFF672RHI bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 1 ENCFF001ZQX 565404 ENCODE Consortium 60f0c82d77f15aae718dd680a17ecafc https://www.encodeproject.org/files/ENCFF672RHI/@@download/ENCFF672RHI.bed.gz mm9 released low read length experiment not submitted to GEO ENCFF572VLY bam unfiltered alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 2683659809 ENCODE Processing Pipeline 0ed064473d59418ae31dbe9093fa5f81 https://www.encodeproject.org/files/ENCFF572VLY/@@download/ENCFF572VLY.bam mm10 released low read length experiment not submitted to GEO ENCFF428HVQ bam unfiltered alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 2488582341 ENCODE Processing Pipeline 776cb2a1fbb8c694aa21d7ac518f4844 https://www.encodeproject.org/files/ENCFF428HVQ/@@download/ENCFF428HVQ.bam mm10 released low read length experiment not submitted to GEO ENCFF436KYT bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 1890769372 ENCODE Processing Pipeline 84bea82626b5ab83813c8acd85c8d55c https://www.encodeproject.org/files/ENCFF436KYT/@@download/ENCFF436KYT.bam mm10 released low read length experiment not submitted to GEO ENCFF890GFD bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 1689616186 ENCODE Processing Pipeline f4dc9c3f7ccb262d9f4600499a9ace36 https://www.encodeproject.org/files/ENCFF890GFD/@@download/ENCFF890GFD.bam mm10 released low read length experiment not submitted to GEO ENCFF962GJM bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 663878919 ENCODE Processing Pipeline 3fd2b7f8f12188bc9ed5333ed4dd1e94 https://www.encodeproject.org/files/ENCFF962GJM/@@download/ENCFF962GJM.bigWig mm10 released low read length experiment not submitted to GEO ENCFF452UXX bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 611528100 ENCODE Processing Pipeline b1c8db76b318532e80019a34f3d365fe https://www.encodeproject.org/files/ENCFF452UXX/@@download/ENCFF452UXX.bigWig mm10 released low read length experiment not submitted to GEO ENCFF989YLQ bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 1011640177 ENCODE Processing Pipeline 6e24b8861917a6fe44e05e66f18dbdfb https://www.encodeproject.org/files/ENCFF989YLQ/@@download/ENCFF989YLQ.bigWig mm10 released low read length experiment not submitted to GEO ENCFF454YWR bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 1245704177 ENCODE Processing Pipeline c69f514dd9f405b7d5ed62b92bab1080 https://www.encodeproject.org/files/ENCFF454YWR/@@download/ENCFF454YWR.bigWig mm10 released low read length experiment not submitted to GEO ENCFF785USF bigBed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF456EVZ 11303854 ENCODE Processing Pipeline 55ea75759b6d8573dd71346b7e923bea https://www.encodeproject.org/files/ENCFF785USF/@@download/ENCFF785USF.bigBed mm10 released low read length experiment not submitted to GEO ENCFF456EVZ bed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 5593614 ENCODE Processing Pipeline ff46e62ecf24428c612a4fef16a2e7c3 https://www.encodeproject.org/files/ENCFF456EVZ/@@download/ENCFF456EVZ.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF243PIS bed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 6630698 ENCODE Processing Pipeline e30108ebc095dfbc641cb5bff315fc9a https://www.encodeproject.org/files/ENCFF243PIS/@@download/ENCFF243PIS.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF345LJJ bigBed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF100ZNH 11295695 ENCODE Processing Pipeline 2dcfb7f470d225b5a6e11cf7a3ecdd49 https://www.encodeproject.org/files/ENCFF345LJJ/@@download/ENCFF345LJJ.bigBed mm10 released low read length experiment not submitted to GEO ENCFF832AQF bigBed narrowPeak optimal idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF347BWU 1222401 ENCODE Processing Pipeline a156e14cf9b5436d3fe94a6ce918a5bd https://www.encodeproject.org/files/ENCFF832AQF/@@download/ENCFF832AQF.bigBed mm10 released low read length experiment not submitted to GEO ENCFF327CNH bigBed narrowPeak conservative idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF969YUQ 1205121 ENCODE Processing Pipeline f3d6b6fc535b0b5fca054b7418c638c0 https://www.encodeproject.org/files/ENCFF327CNH/@@download/ENCFF327CNH.bigBed mm10 released low read length experiment not submitted to GEO ENCFF980QVK bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 727518986 ENCODE Processing Pipeline 3f6f1e6a7cb2d2f29b84af4cc0df32ec https://www.encodeproject.org/files/ENCFF980QVK/@@download/ENCFF980QVK.bigWig mm10 released low read length experiment not submitted to GEO ENCFF041KBA bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 663005041 ENCODE Processing Pipeline 7cf03795fe8c4f8762c7589762908319 https://www.encodeproject.org/files/ENCFF041KBA/@@download/ENCFF041KBA.bigWig mm10 released low read length experiment not submitted to GEO ENCFF100ZNH bed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 5330422 ENCODE Processing Pipeline fe1a16b6ee0908aa2013d0aa26f093ca https://www.encodeproject.org/files/ENCFF100ZNH/@@download/ENCFF100ZNH.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF803QSB bigBed narrowPeak peaks and background as input for IDR ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF243PIS 11546562 ENCODE Processing Pipeline 895d431357050407c1dde9ca7df3af91 https://www.encodeproject.org/files/ENCFF803QSB/@@download/ENCFF803QSB.bigBed mm10 released low read length experiment not submitted to GEO ENCFF969YUQ bed narrowPeak conservative idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF100ZNH, ENCFF243PIS, ENCFF456EVZ, ENCFF547MET 699733 ENCODE Processing Pipeline d0ac3193998502a5286322c99999ae85 https://www.encodeproject.org/files/ENCFF969YUQ/@@download/ENCFF969YUQ.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF347BWU bed narrowPeak optimal idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF100ZNH, ENCFF243PIS, ENCFF456EVZ, ENCFF547MET 713139 ENCODE Processing Pipeline be25fe80a8c1e6d77057eeffc0d7ec5f https://www.encodeproject.org/files/ENCFF347BWU/@@download/ENCFF347BWU.bed.gz mm10 released low read length experiment not submitted to GEO ENCFF782SKE fastq reads ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 50 single-ended 1910054130 Bing Ren, UCSD a559a2218262ffbe0b8e7896b074fef3 SRA:SRR3651863 https://www.encodeproject.org/files/ENCFF782SKE/@@download/ENCFF782SKE.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF896DIR fastq reads ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 50 single-ended 2053946656 Bing Ren, UCSD 857064dd2c991cf1469383414700a978 SRA:SRR3651865 https://www.encodeproject.org/files/ENCFF896DIR/@@download/ENCFF896DIR.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF146TDK fastq reads ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 2 50 single-ended 299364150 Bing Ren, UCSD dad613229905a13b96a8d3e96a22dd36 SRA:SRR3651864 https://www.encodeproject.org/files/ENCFF146TDK/@@download/ENCFF146TDK.fastq.gz Illumina HiSeq 2500 /files/ENCFF418BAW/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF503TWD bam alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF146TDK, ENCFF782SKE, ENCFF806TVZ 1196386404 ENCODE Processing Pipeline eeec0afe640be2fe8e63867a7c3d1f6b https://www.encodeproject.org/files/ENCFF503TWD/@@download/ENCFF503TWD.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF510BDP bam alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF806TVZ, ENCFF896DIR 1067828563 ENCODE Processing Pipeline 35b69a0c40f4a2b40c8792c38932f9aa https://www.encodeproject.org/files/ENCFF510BDP/@@download/ENCFF510BDP.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF633ZLJ bed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF503TWD, ENCFF844LBC 888440 ENCODE Processing Pipeline 186979429451e447b4f973e85ea9c267 https://www.encodeproject.org/files/ENCFF633ZLJ/@@download/ENCFF633ZLJ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF142YFO bed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF455EJT, ENCFF510BDP 1235087 ENCODE Processing Pipeline 790e6716726998574d3d21049c4c054d https://www.encodeproject.org/files/ENCFF142YFO/@@download/ENCFF142YFO.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF648BQO bigBed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF633ZLJ 1892636 ENCODE Processing Pipeline 80b5ebd7e9138c88e74e60327290a934 https://www.encodeproject.org/files/ENCFF648BQO/@@download/ENCFF648BQO.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF622MXZ bed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF455EJT, ENCFF503TWD, ENCFF510BDP, ENCFF844LBC 1523741 ENCODE Processing Pipeline 1105f1c16ad8ea7655edcec9bf3db920 https://www.encodeproject.org/files/ENCFF622MXZ/@@download/ENCFF622MXZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF840EBK bigBed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF142YFO 2487166 ENCODE Processing Pipeline 41546d6a7a1683d7a8727a67738b4b08 https://www.encodeproject.org/files/ENCFF840EBK/@@download/ENCFF840EBK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF662QEY bigBed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF622MXZ 3695795 ENCODE Processing Pipeline 94aeb17d672ae97a833bfe5c8ed7082e https://www.encodeproject.org/files/ENCFF662QEY/@@download/ENCFF662QEY.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF721HTX bigWig signal p-value ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF455EJT, ENCFF510BDP 408100082 ENCODE Processing Pipeline a6f105cef18f4a12e5e829d5a5876863 https://www.encodeproject.org/files/ENCFF721HTX/@@download/ENCFF721HTX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF605XHE bigWig signal p-value ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF503TWD, ENCFF844LBC 444889487 ENCODE Processing Pipeline 444e403d82441c0e3f017ecd951f7b3a https://www.encodeproject.org/files/ENCFF605XHE/@@download/ENCFF605XHE.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF615CTV bigWig signal p-value ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF455EJT, ENCFF503TWD, ENCFF510BDP, ENCFF844LBC 924865789 ENCODE Processing Pipeline 75f27ea658d56ca681da85df26aabdd2 https://www.encodeproject.org/files/ENCFF615CTV/@@download/ENCFF615CTV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF301KFV bigWig fold change over control ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF455EJT, ENCFF510BDP 415758931 ENCODE Processing Pipeline e866c4e569865f810b1ba6d4cd9270e1 https://www.encodeproject.org/files/ENCFF301KFV/@@download/ENCFF301KFV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF689RPJ bigWig fold change over control ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF503TWD, ENCFF844LBC 443348212 ENCODE Processing Pipeline 461b15f51525388714e0b4d419509000 https://www.encodeproject.org/files/ENCFF689RPJ/@@download/ENCFF689RPJ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF555LTE bigBed narrowPeak replicated peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF655UUZ 1280075 ENCODE Processing Pipeline 22835cd38d0cfc9f08867be54e6b01e0 https://www.encodeproject.org/files/ENCFF555LTE/@@download/ENCFF555LTE.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF655UUZ bed narrowPeak replicated peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF142YFO, ENCFF622MXZ, ENCFF633ZLJ 533171 ENCODE Processing Pipeline 1c89842c3b01754ade673f1980991230 https://www.encodeproject.org/files/ENCFF655UUZ/@@download/ENCFF655UUZ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF649HWY bigWig fold change over control ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF455EJT, ENCFF503TWD, ENCFF510BDP, ENCFF844LBC 917396896 ENCODE Processing Pipeline 03f672e013bb0751018e81085c462f4e https://www.encodeproject.org/files/ENCFF649HWY/@@download/ENCFF649HWY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF866LMR bam unfiltered alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF896DIR 2494257886 ENCODE Processing Pipeline a81bf33f3b25970d016ab41ee6457a3a https://www.encodeproject.org/files/ENCFF866LMR/@@download/ENCFF866LMR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF183CGW bam unfiltered alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF146TDK, ENCFF782SKE 2683321725 ENCODE Processing Pipeline ec16219265ec38c2d503d2fd0b18eef5 https://www.encodeproject.org/files/ENCFF183CGW/@@download/ENCFF183CGW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF861JST bam alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF896DIR 1066996448 ENCODE Processing Pipeline 080329d5b4606c2da472a4e40be3385f https://www.encodeproject.org/files/ENCFF861JST/@@download/ENCFF861JST.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF217XNX bam alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF146TDK, ENCFF782SKE 1195580528 ENCODE Processing Pipeline ee7964a0ded79bf5cc0a781f4fd9ec35 https://www.encodeproject.org/files/ENCFF217XNX/@@download/ENCFF217XNX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF996SKD bed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF160VSE, ENCFF861JST 1280681 ENCODE Processing Pipeline fe40e92c379d91b0ece4f77fac0fc2c3 https://www.encodeproject.org/files/ENCFF996SKD/@@download/ENCFF996SKD.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF396KFT bed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF048BGA, ENCFF217XNX 928060 ENCODE Processing Pipeline 8fca5eb15745835fec8885e4d731f263 https://www.encodeproject.org/files/ENCFF396KFT/@@download/ENCFF396KFT.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF042TEK bed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF217XNX, ENCFF861JST 1411431 ENCODE Processing Pipeline dcee0bf400159c0437bcb03020437f15 https://www.encodeproject.org/files/ENCFF042TEK/@@download/ENCFF042TEK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF818HLJ bigBed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF996SKD 2570103 ENCODE Processing Pipeline 0494ef3607d2a17d3d03a14faf843e75 https://www.encodeproject.org/files/ENCFF818HLJ/@@download/ENCFF818HLJ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF813EXS bigBed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF396KFT 1988221 ENCODE Processing Pipeline 367edcfc1097bb00e1a3d083b3cccaec https://www.encodeproject.org/files/ENCFF813EXS/@@download/ENCFF813EXS.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF918ODX bigBed narrowPeak peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF042TEK 3460606 ENCODE Processing Pipeline 0ee020f96be88b5c2d312db00f147481 https://www.encodeproject.org/files/ENCFF918ODX/@@download/ENCFF918ODX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF116ZLJ bigWig signal p-value ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF160VSE, ENCFF861JST 445795285 ENCODE Processing Pipeline c52724e405607302e31541977bfa5417 https://www.encodeproject.org/files/ENCFF116ZLJ/@@download/ENCFF116ZLJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF631ALB bigWig signal p-value ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF048BGA, ENCFF217XNX 516946844 ENCODE Processing Pipeline d47684c6177d93eb1193ff5664355d86 https://www.encodeproject.org/files/ENCFF631ALB/@@download/ENCFF631ALB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF821TTK bigWig signal p-value ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF217XNX, ENCFF861JST 776365780 ENCODE Processing Pipeline dcd2ee53aec4f925e9f0cacf0a9e22ff https://www.encodeproject.org/files/ENCFF821TTK/@@download/ENCFF821TTK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF415NQH bigWig fold change over control ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF160VSE, ENCFF861JST 451135684 ENCODE Processing Pipeline d9186a6e3797fe2831733515f11e32d3 https://www.encodeproject.org/files/ENCFF415NQH/@@download/ENCFF415NQH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF342XKN bigWig fold change over control ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF048BGA, ENCFF217XNX 567413146 ENCODE Processing Pipeline bebf603aac3e180ee3871c045052c447 https://www.encodeproject.org/files/ENCFF342XKN/@@download/ENCFF342XKN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF779TQD bigWig fold change over control ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF217XNX, ENCFF861JST 972485064 ENCODE Processing Pipeline 6bc091367ffc22506fb6d17f34feb10e https://www.encodeproject.org/files/ENCFF779TQD/@@download/ENCFF779TQD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF292IDK bed narrowPeak replicated peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF042TEK, ENCFF396KFT, ENCFF996SKD 527710 ENCODE Processing Pipeline d2259db34fe71691d2b82fbd74791242 https://www.encodeproject.org/files/ENCFF292IDK/@@download/ENCFF292IDK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF228ASD bigBed narrowPeak replicated peaks ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF292IDK 1279537 ENCODE Processing Pipeline c62c4e59fea4b0369e739d1141024c0c https://www.encodeproject.org/files/ENCFF228ASD/@@download/ENCFF228ASD.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001NIH bigBed narrowPeak peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YID 1558980 Michael Snyder, Stanford f3e0297a882be96dd23d5fcb4c66c955 https://www.encodeproject.org/files/ENCFF001NIH/@@download/ENCFF001NIH.bigBed mm9 released low read length, inconsistent target of control experiment ENCFF001NII bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NJD 462164655 Michael Snyder, Stanford f9ede47d9acda6f5c896d398e10163cd https://www.encodeproject.org/files/ENCFF001NII/@@download/ENCFF001NII.bam mm9 released low read length, inconsistent target of control experiment ENCFF001NIJ bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NIZ 540191490 Michael Snyder, Stanford e39e45cff731d17df82ac700932bdeac https://www.encodeproject.org/files/ENCFF001NIJ/@@download/ENCFF001NIJ.bam mm9 released low read length, inconsistent target of control experiment ENCFF001NIK bigWig signal ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NII, ENCFF001NIJ 375727662 Michael Snyder, Stanford 562b6ebd3049c65483939a8adb7dded6 https://www.encodeproject.org/files/ENCFF001NIK/@@download/ENCFF001NIK.bigWig mm9 released low read length, inconsistent target of control experiment ENCFF001NIZ fastq reads ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1080831141 Michael Snyder, Stanford ca7c170fba23a32445ce86d1ae6abc75 https://www.encodeproject.org/files/ENCFF001NIZ/@@download/ENCFF001NIZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment ENCFF001NJD fastq reads ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1543164986 Michael Snyder, Stanford a4c2352361c67e5c5360977efbc2bd56 https://www.encodeproject.org/files/ENCFF001NJD/@@download/ENCFF001NJD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment ENCFF001YID bed narrowPeak peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NII, ENCFF001NIJ 639901 Michael Snyder, Stanford 4885ce2e1949fdc180db3e35f4f63bcf https://www.encodeproject.org/files/ENCFF001YID/@@download/ENCFF001YID.bed.gz mm9 released low read length, inconsistent target of control experiment ENCFF322BDJ bam unfiltered alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJD, ENCFF018NEO 1784972204 ENCODE Processing Pipeline 690d9ffa8821af5b873a81b7b5d05838 https://www.encodeproject.org/files/ENCFF322BDJ/@@download/ENCFF322BDJ.bam mm10 released low read length, inconsistent target of control experiment ENCFF505CTW bam unfiltered alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIZ, ENCFF018NEO 1281061048 ENCODE Processing Pipeline 4fc792ae2ef89b49c3484fdce4f2eb71 https://www.encodeproject.org/files/ENCFF505CTW/@@download/ENCFF505CTW.bam mm10 released low read length, inconsistent target of control experiment ENCFF371ZUN bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJD, ENCFF018NEO 1164189550 ENCODE Processing Pipeline ae5d1b8a2fb2e0f55cd7755d82cd60fd https://www.encodeproject.org/files/ENCFF371ZUN/@@download/ENCFF371ZUN.bam mm10 released low read length, inconsistent target of control experiment ENCFF459CWX bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIZ, ENCFF018NEO 892949903 ENCODE Processing Pipeline fa836d267ad4d73feb8309d0ad79438e https://www.encodeproject.org/files/ENCFF459CWX/@@download/ENCFF459CWX.bam mm10 released low read length, inconsistent target of control experiment ENCFF976JML bigWig signal p-value ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF371ZUN 225203197 ENCODE Processing Pipeline 2fc78c986ff50970d018db42056b38d4 https://www.encodeproject.org/files/ENCFF976JML/@@download/ENCFF976JML.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF090UQR bigWig signal p-value ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF371ZUN, ENCFF459CWX 219730592 ENCODE Processing Pipeline 0498bae0f83224342dd586a8f65f7728 https://www.encodeproject.org/files/ENCFF090UQR/@@download/ENCFF090UQR.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF690JIX bigWig signal p-value ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF459CWX 216496223 ENCODE Processing Pipeline 7db25df448c85bf1b978bb5bf64d32a2 https://www.encodeproject.org/files/ENCFF690JIX/@@download/ENCFF690JIX.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF089GDK bigWig fold change over control ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF371ZUN 401353070 ENCODE Processing Pipeline 622e42b47cbdfe6286d5e82c092edce2 https://www.encodeproject.org/files/ENCFF089GDK/@@download/ENCFF089GDK.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF252PZQ bigWig fold change over control ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF459CWX 341096295 ENCODE Processing Pipeline 69cc3945c6d7193ccf3f1a377be239d7 https://www.encodeproject.org/files/ENCFF252PZQ/@@download/ENCFF252PZQ.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF291HYO bigWig fold change over control ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF371ZUN, ENCFF459CWX 648435994 ENCODE Processing Pipeline 9c1ef1b81fbd510bd94731ad1ebf9a05 https://www.encodeproject.org/files/ENCFF291HYO/@@download/ENCFF291HYO.bigWig mm10 released low read length, inconsistent target of control experiment ENCFF802FDG bed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF371ZUN 5571226 ENCODE Processing Pipeline 2eda0b4c3999d3cd263340721b101c16 https://www.encodeproject.org/files/ENCFF802FDG/@@download/ENCFF802FDG.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF291AVC bed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF459CWX 5514492 ENCODE Processing Pipeline fbe396d9a6ddfe0cbe8f6739f6b26baa https://www.encodeproject.org/files/ENCFF291AVC/@@download/ENCFF291AVC.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF834RWN bigBed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF802FDG 12905986 ENCODE Processing Pipeline cfb2ec9c1e2c9c6f8f06991e35aa313d https://www.encodeproject.org/files/ENCFF834RWN/@@download/ENCFF834RWN.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF331PXR bed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF371ZUN, ENCFF459CWX 6168633 ENCODE Processing Pipeline 97cc26a4eb3d003b6917ac525ca673d6 https://www.encodeproject.org/files/ENCFF331PXR/@@download/ENCFF331PXR.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF450BJH bigBed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF291AVC 12905927 ENCODE Processing Pipeline d0086c764987cd1136a72379d009c4e8 https://www.encodeproject.org/files/ENCFF450BJH/@@download/ENCFF450BJH.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF380YCS bigBed narrowPeak peaks and background as input for IDR ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF331PXR 12870801 ENCODE Processing Pipeline 376b06ef50508ecc69344cf28d4cadc0 https://www.encodeproject.org/files/ENCFF380YCS/@@download/ENCFF380YCS.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF684GLM bed narrowPeak conservative idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF291AVC, ENCFF331PXR, ENCFF547MET, ENCFF802FDG 546850 ENCODE Processing Pipeline e40b21861c50927434a9cff8b43e7848 https://www.encodeproject.org/files/ENCFF684GLM/@@download/ENCFF684GLM.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF033QFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF684GLM 1174933 ENCODE Processing Pipeline a77759cbe2ae833e1854a403d9f4afed https://www.encodeproject.org/files/ENCFF033QFW/@@download/ENCFF033QFW.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF228CPY bed narrowPeak optimal idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF291AVC, ENCFF331PXR, ENCFF547MET, ENCFF802FDG 561836 ENCODE Processing Pipeline ddfb2d963406a72df84e7e836049202f https://www.encodeproject.org/files/ENCFF228CPY/@@download/ENCFF228CPY.bed.gz mm10 released low read length, inconsistent target of control experiment ENCFF843QVM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF228CPY 1202230 ENCODE Processing Pipeline ca1e0836f307d6e3255ec571f1dafc77 https://www.encodeproject.org/files/ENCFF843QVM/@@download/ENCFF843QVM.bigBed mm10 released low read length, inconsistent target of control experiment ENCFF002ETI fastq reads ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 354791696 Bing Ren, UCSD d878d7518cc0a17e83c307942df839f6 SRA:SRR3651763 https://www.encodeproject.org/files/ENCFF002ETI/@@download/ENCFF002ETI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYB/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF002ETM fastq reads ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 966663043 Bing Ren, UCSD 254a24ca9f3a2bf8f869548de68396e5 SRA:SRR3651762 https://www.encodeproject.org/files/ENCFF002ETM/@@download/ENCFF002ETM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYC/ released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF254BWE bam alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETM, ENCFF806TVZ 796540925 ENCODE Processing Pipeline 618f2d7c7c86330249808dc37672de2d https://www.encodeproject.org/files/ENCFF254BWE/@@download/ENCFF254BWE.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF912ODG fastq reads ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 210624538 Bing Ren, UCSD 281832ad1aa504651705952ea2b6633a SRA:SRR3651764 https://www.encodeproject.org/files/ENCFF912ODG/@@download/ENCFF912ODG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYB/ released mixed read lengths, low read length, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF139HYS bam alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETI, ENCFF806TVZ, ENCFF912ODG 519432295 ENCODE Processing Pipeline c348ba068dfb2164bbb027505580c576 https://www.encodeproject.org/files/ENCFF139HYS/@@download/ENCFF139HYS.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF037EAY bed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF139HYS, ENCFF783YRC 922262 ENCODE Processing Pipeline 81f87931a00599c24427a8e223a023e3 https://www.encodeproject.org/files/ENCFF037EAY/@@download/ENCFF037EAY.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF054YCS bigBed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF037EAY 2878281 ENCODE Processing Pipeline 14040a3fb34a0cd1548a83aee9966bbc https://www.encodeproject.org/files/ENCFF054YCS/@@download/ENCFF054YCS.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF646KQA bigBed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF314MLG 3021931 ENCODE Processing Pipeline cc03b5633b7e4058ea3737f15e99d15b https://www.encodeproject.org/files/ENCFF646KQA/@@download/ENCFF646KQA.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF314MLG bed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF254BWE 975383 ENCODE Processing Pipeline 74e6b759337c3df4a987a716af1eec2a https://www.encodeproject.org/files/ENCFF314MLG/@@download/ENCFF314MLG.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF533QKB bed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF139HYS, ENCFF141POR, ENCFF254BWE, ENCFF783YRC 1093263 ENCODE Processing Pipeline f91931ea476f1446dc002d2c34052c9c https://www.encodeproject.org/files/ENCFF533QKB/@@download/ENCFF533QKB.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF953JEO bigBed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF533QKB 3316613 ENCODE Processing Pipeline 1c5d131fe13c437524adbbce5429f0cf https://www.encodeproject.org/files/ENCFF953JEO/@@download/ENCFF953JEO.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF385ZNR bigWig signal p-value ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF139HYS, ENCFF141POR, ENCFF254BWE, ENCFF783YRC 635742379 ENCODE Processing Pipeline 653f68036e1633201a3382683567e789 https://www.encodeproject.org/files/ENCFF385ZNR/@@download/ENCFF385ZNR.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF982LZR bigWig signal p-value ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF254BWE 377029317 ENCODE Processing Pipeline efd4b377d9a39905ced2ffb6a6c448d4 https://www.encodeproject.org/files/ENCFF982LZR/@@download/ENCFF982LZR.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF153MBO bigWig fold change over control ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF139HYS, ENCFF783YRC 239148061 ENCODE Processing Pipeline 562f3108d23f8560b80d73d80a7860d8 https://www.encodeproject.org/files/ENCFF153MBO/@@download/ENCFF153MBO.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF308ZWS bigWig fold change over control ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF254BWE 347586528 ENCODE Processing Pipeline 791265b76e3092b441f48d87d2cab831 https://www.encodeproject.org/files/ENCFF308ZWS/@@download/ENCFF308ZWS.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF623DOZ bigWig signal p-value ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF139HYS, ENCFF783YRC 274962516 ENCODE Processing Pipeline 88447740859f60b261dfbde65a60fb1a https://www.encodeproject.org/files/ENCFF623DOZ/@@download/ENCFF623DOZ.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF701ZYV bigWig fold change over control ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF139HYS, ENCFF141POR, ENCFF254BWE, ENCFF783YRC 638254285 ENCODE Processing Pipeline 093863ca9711fa23df520495a2479b64 https://www.encodeproject.org/files/ENCFF701ZYV/@@download/ENCFF701ZYV.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF138WHN bed narrowPeak replicated peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF037EAY, ENCFF314MLG, ENCFF533QKB 1108756 ENCODE Processing Pipeline cc257c8cb09c8e7184d2fd611692ddee https://www.encodeproject.org/files/ENCFF138WHN/@@download/ENCFF138WHN.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF226FFK bigBed narrowPeak replicated peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF138WHN 2448012 ENCODE Processing Pipeline 534bbbb6ed13bae4cc0e46506403cab3 https://www.encodeproject.org/files/ENCFF226FFK/@@download/ENCFF226FFK.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF773IZI bam unfiltered alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETI, ENCFF018NEO, ENCFF912ODG 664227096 ENCODE Processing Pipeline 2236dc7c213f8388c3a9dec3d7dfb72c https://www.encodeproject.org/files/ENCFF773IZI/@@download/ENCFF773IZI.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF595ZOR bam unfiltered alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETM, ENCFF018NEO 1179485598 ENCODE Processing Pipeline a3407affed42e1c88ee50663973f9351 https://www.encodeproject.org/files/ENCFF595ZOR/@@download/ENCFF595ZOR.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF375VYV bam alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETI, ENCFF018NEO, ENCFF912ODG 473480035 ENCODE Processing Pipeline 5c1e419ce690729939057a8243ee01c4 https://www.encodeproject.org/files/ENCFF375VYV/@@download/ENCFF375VYV.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF965WSU bam alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETM, ENCFF018NEO 796413234 ENCODE Processing Pipeline 7872a4522a54a1793b736811617eeff6 https://www.encodeproject.org/files/ENCFF965WSU/@@download/ENCFF965WSU.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF459YVU bed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF375VYV, ENCFF658UBJ, ENCFF965WSU 1092902 ENCODE Processing Pipeline 9c7447bceb78bf939d2e2ccb06bbc5c9 https://www.encodeproject.org/files/ENCFF459YVU/@@download/ENCFF459YVU.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF846IIK bed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF375VYV, ENCFF658UBJ 923409 ENCODE Processing Pipeline f5a32e6cae44b431c2d25b70b86372cb https://www.encodeproject.org/files/ENCFF846IIK/@@download/ENCFF846IIK.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF140SJQ bed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF965WSU 976349 ENCODE Processing Pipeline 2ef881046380dd69947479a89f57a971 https://www.encodeproject.org/files/ENCFF140SJQ/@@download/ENCFF140SJQ.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF576GNI bigBed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF846IIK 2875288 ENCODE Processing Pipeline 63f20325352496958fc83881fca6d936 https://www.encodeproject.org/files/ENCFF576GNI/@@download/ENCFF576GNI.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF731NSC bigBed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF140SJQ 3023978 ENCODE Processing Pipeline 7debb46ce9a599fa25e9e8c038d2981f https://www.encodeproject.org/files/ENCFF731NSC/@@download/ENCFF731NSC.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF764LRL bigBed narrowPeak peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF459YVU 3313057 ENCODE Processing Pipeline 7a400be22955d45546c15e4d9bf81a63 https://www.encodeproject.org/files/ENCFF764LRL/@@download/ENCFF764LRL.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF174BXZ bigWig signal p-value ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF375VYV, ENCFF658UBJ 342123640 ENCODE Processing Pipeline da175f829ed6301b46f7b1c0c1946761 https://www.encodeproject.org/files/ENCFF174BXZ/@@download/ENCFF174BXZ.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF695SQA bigWig signal p-value ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF965WSU 354184649 ENCODE Processing Pipeline 5afa2f433df4ee5efd8e19d35187926b https://www.encodeproject.org/files/ENCFF695SQA/@@download/ENCFF695SQA.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF322AHX bigWig signal p-value ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF375VYV, ENCFF658UBJ, ENCFF965WSU 669079222 ENCODE Processing Pipeline fb57fd1b22b5b9decad12656a522c677 https://www.encodeproject.org/files/ENCFF322AHX/@@download/ENCFF322AHX.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF358ANL bigWig fold change over control ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF375VYV, ENCFF658UBJ 237738891 ENCODE Processing Pipeline 2e4427d0b83cb51878ea9ab240a38c7a https://www.encodeproject.org/files/ENCFF358ANL/@@download/ENCFF358ANL.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF877TEJ bigWig fold change over control ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF965WSU 348106547 ENCODE Processing Pipeline 0e80d052af4f359ed16909e6e0591767 https://www.encodeproject.org/files/ENCFF877TEJ/@@download/ENCFF877TEJ.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF950JKI bigWig fold change over control ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF375VYV, ENCFF658UBJ, ENCFF965WSU 642323995 ENCODE Processing Pipeline 066fbcec9e1fb6d873f1e0488520079b https://www.encodeproject.org/files/ENCFF950JKI/@@download/ENCFF950JKI.bigWig mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF501CJA bed narrowPeak replicated peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF140SJQ, ENCFF459YVU, ENCFF846IIK 1106756 ENCODE Processing Pipeline a4dd6d9593c2ab77eb6ec59b97a1ded7 https://www.encodeproject.org/files/ENCFF501CJA/@@download/ENCFF501CJA.bed.gz mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF006XBH bigBed narrowPeak replicated peaks ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF501CJA 2437868 ENCODE Processing Pipeline 7f6ecac04a5230bc1dc11bbc7e1ae7b4 https://www.encodeproject.org/files/ENCFF006XBH/@@download/ENCFF006XBH.bigBed mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF001KEY bigBed broadPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWW 670597 Bing Ren, UCSD c39cc4b157d1cc33cd5862cb8d6544a3 https://www.encodeproject.org/files/ENCFF001KEY/@@download/ENCFF001KEY.bigBed mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KEZ bam alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KFD 600976698 Bing Ren, UCSD 416bb3f048544879a59beb0d88657cac https://www.encodeproject.org/files/ENCFF001KEZ/@@download/ENCFF001KEZ.bam mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFA bam alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KFJ 1207614359 Bing Ren, UCSD 9f0ae2a4068b09ec2ae2cd77c8498988 https://www.encodeproject.org/files/ENCFF001KFA/@@download/ENCFF001KFA.bam mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFB bigWig signal ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 26336938 Bing Ren, UCSD 33aa36428599463daa0c2d8e9e336e18 https://www.encodeproject.org/files/ENCFF001KFB/@@download/ENCFF001KFB.bigWig mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFD fastq reads ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 631567084 Bing Ren, UCSD 6ca3b3780a45701e7f87e04a64dc8382 https://www.encodeproject.org/files/ENCFF001KFD/@@download/ENCFF001KFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF071UWJ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFJ fastq reads ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1367183402 Bing Ren, UCSD 3fe6c1fa61a25b6c34971b855650f60b https://www.encodeproject.org/files/ENCFF001KFJ/@@download/ENCFF001KFJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF659VUB/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XWW bed broadPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 391096 Bing Ren, UCSD c253af43387b1ab34776908168a2308e https://www.encodeproject.org/files/ENCFF001XWW/@@download/ENCFF001XWW.bed.gz mm9 archived low read length, mild to moderate bottlenecking, mixed read lengths missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF998FCJ bam unfiltered alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFD, ENCFF018NEO 621439430 ENCODE Processing Pipeline 7a7f2948a0e0b607aca0574f7b4a897d https://www.encodeproject.org/files/ENCFF998FCJ/@@download/ENCFF998FCJ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF066WIK bam unfiltered alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFJ, ENCFF018NEO 1000046058 ENCODE Processing Pipeline 3e30985d68be15d9e14233038e272669 https://www.encodeproject.org/files/ENCFF066WIK/@@download/ENCFF066WIK.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF997CAQ bam alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFD, ENCFF018NEO 356178722 ENCODE Processing Pipeline 8554703f6d32efcc4504ebe58a077dd7 https://www.encodeproject.org/files/ENCFF997CAQ/@@download/ENCFF997CAQ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF425ZMW bam alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFJ, ENCFF018NEO 339746674 ENCODE Processing Pipeline efe77cae7fac61de5e24517315abcb45 https://www.encodeproject.org/files/ENCFF425ZMW/@@download/ENCFF425ZMW.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF922ZMY bed narrowPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF682ICT, ENCFF997CAQ 1013059 ENCODE Processing Pipeline 34f2a68850b3b5c0c007f9fc17c0a30f https://www.encodeproject.org/files/ENCFF922ZMY/@@download/ENCFF922ZMY.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF189EHU bigBed narrowPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF343ZQG 2606021 ENCODE Processing Pipeline 84cd05b4d4cda0d2029fa1818f7ba0bd https://www.encodeproject.org/files/ENCFF189EHU/@@download/ENCFF189EHU.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF204SXD bed narrowPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF318EHA, ENCFF425ZMW, ENCFF682ICT, ENCFF997CAQ 997612 ENCODE Processing Pipeline 46e5b0b55450eb6dfdd5863744222d7e https://www.encodeproject.org/files/ENCFF204SXD/@@download/ENCFF204SXD.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF343ZQG bed narrowPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF318EHA, ENCFF425ZMW, ENCFF682ICT 860467 ENCODE Processing Pipeline 1f8218e1c4d244b3c5df1287d51cc6c6 https://www.encodeproject.org/files/ENCFF343ZQG/@@download/ENCFF343ZQG.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF518WMM bigBed narrowPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF922ZMY 3050898 ENCODE Processing Pipeline da7fee9eb559e2d98fb2ca80a912a18a https://www.encodeproject.org/files/ENCFF518WMM/@@download/ENCFF518WMM.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF167THF bigWig fold change over control ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF318EHA, ENCFF425ZMW, ENCFF682ICT 144953610 ENCODE Processing Pipeline be609d66a81d359dd18469bbec8d468c https://www.encodeproject.org/files/ENCFF167THF/@@download/ENCFF167THF.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF034BOY bigBed narrowPeak peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF204SXD 2930355 ENCODE Processing Pipeline 88dd633075f58ef6a64b124fb1c914ed https://www.encodeproject.org/files/ENCFF034BOY/@@download/ENCFF034BOY.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF834URW bigWig signal p-value ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF318EHA, ENCFF425ZMW, ENCFF682ICT 306036465 ENCODE Processing Pipeline 2a6d73d38313158afb11a8fd3d5cbb38 https://www.encodeproject.org/files/ENCFF834URW/@@download/ENCFF834URW.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF363LCX bigWig signal p-value ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF318EHA, ENCFF425ZMW, ENCFF682ICT, ENCFF997CAQ 374040490 ENCODE Processing Pipeline 1238b17f520fdc91c6c1cb0f37292a77 https://www.encodeproject.org/files/ENCFF363LCX/@@download/ENCFF363LCX.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF955FPW bigWig fold change over control ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF682ICT, ENCFF997CAQ 137620038 ENCODE Processing Pipeline fc347729a39ff49172a356cae343b999 https://www.encodeproject.org/files/ENCFF955FPW/@@download/ENCFF955FPW.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF593AQY bigWig signal p-value ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF682ICT, ENCFF997CAQ 320351219 ENCODE Processing Pipeline eb75f43960011994c58fe3ace925b5f1 https://www.encodeproject.org/files/ENCFF593AQY/@@download/ENCFF593AQY.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF857GJE bigWig fold change over control ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF318EHA, ENCFF425ZMW, ENCFF682ICT, ENCFF997CAQ 228384314 ENCODE Processing Pipeline 2ceb59be95ea565efccb3f03a4fcc1b3 https://www.encodeproject.org/files/ENCFF857GJE/@@download/ENCFF857GJE.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF576PIA bigBed narrowPeak replicated peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF680CYO 2393411 ENCODE Processing Pipeline f9f2a7b1997fbfce3fc5e843ee443301 https://www.encodeproject.org/files/ENCFF576PIA/@@download/ENCFF576PIA.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF680CYO bed narrowPeak replicated peaks ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF204SXD, ENCFF343ZQG, ENCFF922ZMY 1106238 ENCODE Processing Pipeline 7491d814a6d95845b28e4097fadf43bc https://www.encodeproject.org/files/ENCFF680CYO/@@download/ENCFF680CYO.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF548AXA fastq reads ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 1 50 single-ended 1380010561 Richard Myers, HAIB 145a296f07382bcd552003ab0d5d759e SRA:SRR5111731 https://www.encodeproject.org/files/ENCFF548AXA/@@download/ENCFF548AXA.fastq.gz Illumina HiSeq 2000 /files/ENCFF876HRO/ released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF482ODC fastq reads ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 1 50 single-ended 1728830966 Richard Myers, HAIB d21138a6302425e019bd8c89e05b4424 SRA:SRR5111730 https://www.encodeproject.org/files/ENCFF482ODC/@@download/ENCFF482ODC.fastq.gz Illumina HiSeq 2000 /files/ENCFF876HRO/ released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF103JFC bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF548AXA, ENCFF806TVZ 1105145281 ENCODE Processing Pipeline d59d0bda5438918eedcba461a9e15129 https://www.encodeproject.org/files/ENCFF103JFC/@@download/ENCFF103JFC.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF991YID bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF482ODC, ENCFF806TVZ 1336203578 ENCODE Processing Pipeline 4d590d2bab95298d42a243af304d6ed6 https://www.encodeproject.org/files/ENCFF991YID/@@download/ENCFF991YID.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF728YBP bam unfiltered alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548AXA 1486808578 ENCODE Processing Pipeline c107d82cab09a06f122b8c7bef194719 https://www.encodeproject.org/files/ENCFF728YBP/@@download/ENCFF728YBP.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF797ITD bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548AXA 1104924953 ENCODE Processing Pipeline 1716bf24a4baf3e476d0164666199601 https://www.encodeproject.org/files/ENCFF797ITD/@@download/ENCFF797ITD.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF323GLP bam unfiltered alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF482ODC 1834149398 ENCODE Processing Pipeline ba4230d347a011e267889006021fc593 https://www.encodeproject.org/files/ENCFF323GLP/@@download/ENCFF323GLP.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF163GGA bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF482ODC 1335940972 ENCODE Processing Pipeline ff3cfea2057b2d1497ef2366b38e2203 https://www.encodeproject.org/files/ENCFF163GGA/@@download/ENCFF163GGA.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF184OFH bigWig signal p-value ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF163GGA, ENCFF503YHJ 353276687 ENCODE Processing Pipeline dc57ef036ddd4ccf3b272081362f8f22 https://www.encodeproject.org/files/ENCFF184OFH/@@download/ENCFF184OFH.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF817CTG bigWig signal p-value ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF503YHJ, ENCFF797ITD 360147019 ENCODE Processing Pipeline 018a872e5a51ecb24c58b4e462176e2a https://www.encodeproject.org/files/ENCFF817CTG/@@download/ENCFF817CTG.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF486GWI bigWig fold change over control ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF163GGA, ENCFF503YHJ 476316043 ENCODE Processing Pipeline d59199ae16418d1adb7256810b26ad02 https://www.encodeproject.org/files/ENCFF486GWI/@@download/ENCFF486GWI.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF481QMD bigWig signal p-value ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF163GGA, ENCFF503YHJ, ENCFF797ITD 344102505 ENCODE Processing Pipeline c803fda144b54ea2fb92625ed50c1f61 https://www.encodeproject.org/files/ENCFF481QMD/@@download/ENCFF481QMD.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF718HWX bed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF163GGA, ENCFF503YHJ, ENCFF797ITD 6449167 ENCODE Processing Pipeline b7fc8cde356a4e71739319aa28c1a486 https://www.encodeproject.org/files/ENCFF718HWX/@@download/ENCFF718HWX.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF118JZH bigBed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF165TDV 13272043 ENCODE Processing Pipeline 52bb3ba2a4d105fd62fc4ccafd10b8f0 https://www.encodeproject.org/files/ENCFF118JZH/@@download/ENCFF118JZH.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF730HBA bigWig fold change over control ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF503YHJ, ENCFF797ITD 411974367 ENCODE Processing Pipeline 61dd427e43a6f1f0153fa4805c507cb6 https://www.encodeproject.org/files/ENCFF730HBA/@@download/ENCFF730HBA.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF165TDV bed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 ENCFF163GGA, ENCFF503YHJ 5867873 ENCODE Processing Pipeline de54fb15263c776caa425aa206de9f9c https://www.encodeproject.org/files/ENCFF165TDV/@@download/ENCFF165TDV.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF987HMC bigBed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF485TBQ 13208383 ENCODE Processing Pipeline 4e4d076d639748a8f77c6e1d5c662bfb https://www.encodeproject.org/files/ENCFF987HMC/@@download/ENCFF987HMC.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF583XLF bigWig fold change over control ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF163GGA, ENCFF503YHJ, ENCFF797ITD 745148412 ENCODE Processing Pipeline 84f96b0ea47670b74ede6c59b8e82891 https://www.encodeproject.org/files/ENCFF583XLF/@@download/ENCFF583XLF.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF956UZL bed narrowPeak optimal idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF165TDV, ENCFF485TBQ, ENCFF547MET, ENCFF718HWX 784401 ENCODE Processing Pipeline 75cc9a7fcfd6dd8e05485319aba618fa https://www.encodeproject.org/files/ENCFF956UZL/@@download/ENCFF956UZL.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF485TBQ bed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 ENCFF503YHJ, ENCFF797ITD 5784319 ENCODE Processing Pipeline 68603d0211f98e8538116c6983a2d377 https://www.encodeproject.org/files/ENCFF485TBQ/@@download/ENCFF485TBQ.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF649PBQ bed narrowPeak conservative idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF165TDV, ENCFF485TBQ, ENCFF547MET, ENCFF718HWX 758067 ENCODE Processing Pipeline 08f77ea602a5ebe6415a18480b03cb66 https://www.encodeproject.org/files/ENCFF649PBQ/@@download/ENCFF649PBQ.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF094UIO bigBed narrowPeak peaks and background as input for IDR ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF718HWX 13191140 ENCODE Processing Pipeline 9eacbd118b857a4d31aff9edcccc71e9 https://www.encodeproject.org/files/ENCFF094UIO/@@download/ENCFF094UIO.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF879GLU bigBed narrowPeak conservative idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF649PBQ 1323217 ENCODE Processing Pipeline b3da6112e8cdb271c5527be0169b81be https://www.encodeproject.org/files/ENCFF879GLU/@@download/ENCFF879GLU.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF195XXK bigBed narrowPeak optimal idr thresholded peaks ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1, 2 ENCFF956UZL 1361508 ENCODE Processing Pipeline 6a10d9b3f90d2993309bcbdd8b64fc3a https://www.encodeproject.org/files/ENCFF195XXK/@@download/ENCFF195XXK.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF534ZMY fastq reads ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2350150458 Bing Ren, UCSD 32ce81e14cc2cf56b47c9308ba2b55dd SRA:SRR3653150 https://www.encodeproject.org/files/ENCFF534ZMY/@@download/ENCFF534ZMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF523IZM/, /files/ENCFF554IHG/ released mild to moderate bottlenecking, inconsistent platforms ENCFF361MHV fastq reads ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2407664168 Bing Ren, UCSD 6da55c8f6d17f86a6caa0b7a772c5562 SRA:SRR3653149 https://www.encodeproject.org/files/ENCFF361MHV/@@download/ENCFF361MHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF983QZJ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF634JIH bam alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF361MHV, ENCFF806TVZ 1834323860 ENCODE Processing Pipeline 8640a1d7a6a482b7056df62dd8f47234 https://www.encodeproject.org/files/ENCFF634JIH/@@download/ENCFF634JIH.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF117AUW bam alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF534ZMY, ENCFF806TVZ 1765179432 ENCODE Processing Pipeline e33dc154f4446f28defffdc28eff2706 https://www.encodeproject.org/files/ENCFF117AUW/@@download/ENCFF117AUW.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF767NGH bed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF117AUW, ENCFF275UYN, ENCFF301ZSF, ENCFF634JIH 1355355 ENCODE Processing Pipeline d2102a8ce3f69afdb70613a5ad8533b0 https://www.encodeproject.org/files/ENCFF767NGH/@@download/ENCFF767NGH.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF659KFL bigBed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF440YXW 3077563 ENCODE Processing Pipeline 97cc6c78083ce905cccf9eb7a25b514c https://www.encodeproject.org/files/ENCFF659KFL/@@download/ENCFF659KFL.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF786MKU bed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF634JIH 1236293 ENCODE Processing Pipeline e4ff8fa77f4d16ddd760ffed82343711 https://www.encodeproject.org/files/ENCFF786MKU/@@download/ENCFF786MKU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF440YXW bed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF117AUW, ENCFF275UYN, ENCFF301ZSF 1109787 ENCODE Processing Pipeline 85168d2d3161df1a04ed06bf62145e3c https://www.encodeproject.org/files/ENCFF440YXW/@@download/ENCFF440YXW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF533NUG bigBed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF786MKU 3314196 ENCODE Processing Pipeline f746e3ba88efa89f6a0bc2a8594388a3 https://www.encodeproject.org/files/ENCFF533NUG/@@download/ENCFF533NUG.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF714BTV bigBed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF767NGH 3557895 ENCODE Processing Pipeline 073d52cf160cf36b3704d175a421950e https://www.encodeproject.org/files/ENCFF714BTV/@@download/ENCFF714BTV.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF983HFS bigWig signal p-value ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF117AUW, ENCFF275UYN, ENCFF301ZSF 750207763 ENCODE Processing Pipeline a3e67fd73c8f5c9eab361859c0fd2225 https://www.encodeproject.org/files/ENCFF983HFS/@@download/ENCFF983HFS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF749XEZ bigWig signal p-value ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF634JIH 700959669 ENCODE Processing Pipeline c178dee80a4ba141ac9bab0fe0108867 https://www.encodeproject.org/files/ENCFF749XEZ/@@download/ENCFF749XEZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF721ZTL bigWig signal p-value ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF117AUW, ENCFF275UYN, ENCFF301ZSF, ENCFF634JIH 895544142 ENCODE Processing Pipeline 706bdf281d76edb7be41985aea21fa6c https://www.encodeproject.org/files/ENCFF721ZTL/@@download/ENCFF721ZTL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF705CDD bigWig fold change over control ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF117AUW, ENCFF275UYN, ENCFF301ZSF 780041160 ENCODE Processing Pipeline bdd166a62698084e235e462bf9e91790 https://www.encodeproject.org/files/ENCFF705CDD/@@download/ENCFF705CDD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF292NSK bigWig fold change over control ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF275UYN, ENCFF301ZSF, ENCFF634JIH 786029690 ENCODE Processing Pipeline 91b7c925fcc6ab560b57a8a06903fe69 https://www.encodeproject.org/files/ENCFF292NSK/@@download/ENCFF292NSK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF743QZD bigWig fold change over control ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF117AUW, ENCFF275UYN, ENCFF301ZSF, ENCFF634JIH 1171837537 ENCODE Processing Pipeline 2c4c12d1b5ea6c086225a5ab0d1b3cc1 https://www.encodeproject.org/files/ENCFF743QZD/@@download/ENCFF743QZD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF269QSY bed narrowPeak replicated peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF440YXW, ENCFF767NGH, ENCFF786MKU 993917 ENCODE Processing Pipeline cd2f81e430cc14723dbd504bedfd1e4f https://www.encodeproject.org/files/ENCFF269QSY/@@download/ENCFF269QSY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF700EZY bigBed narrowPeak replicated peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF269QSY 2036342 ENCODE Processing Pipeline 1b70a88d5a1d8ec2fdc558031b9fabd3 https://www.encodeproject.org/files/ENCFF700EZY/@@download/ENCFF700EZY.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF342LZN bam unfiltered alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF361MHV 2784334798 ENCODE Processing Pipeline 8c45392e798bce5a521fdf8919a85076 https://www.encodeproject.org/files/ENCFF342LZN/@@download/ENCFF342LZN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF297ZSN bam unfiltered alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF534ZMY 2749977871 ENCODE Processing Pipeline a938a7bf929cd4c6532b1220bd7b6e71 https://www.encodeproject.org/files/ENCFF297ZSN/@@download/ENCFF297ZSN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF018RET bam alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF534ZMY 1764799899 ENCODE Processing Pipeline b208087791c241dcba9afae78271200e https://www.encodeproject.org/files/ENCFF018RET/@@download/ENCFF018RET.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF633TTC bam alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF361MHV 1833992714 ENCODE Processing Pipeline d7d54836c8bba1e18357136b44284fa8 https://www.encodeproject.org/files/ENCFF633TTC/@@download/ENCFF633TTC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF304OXD bed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018RET, ENCFF396QPU 1084185 ENCODE Processing Pipeline b5643b64f49db700f0b28128ac6dc93c https://www.encodeproject.org/files/ENCFF304OXD/@@download/ENCFF304OXD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF489IMO bed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF633TTC 1192989 ENCODE Processing Pipeline 06ed8ca5d06bb31579a288063874b954 https://www.encodeproject.org/files/ENCFF489IMO/@@download/ENCFF489IMO.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF361CYH bigBed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF304OXD 3033775 ENCODE Processing Pipeline fd15a870b2342641e38bf4c5cdcd3c6b https://www.encodeproject.org/files/ENCFF361CYH/@@download/ENCFF361CYH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF247FOM bed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF018RET, ENCFF231HNB, ENCFF396QPU, ENCFF633TTC 1364262 ENCODE Processing Pipeline e5a63a394d26c563fb48d89e81574d50 https://www.encodeproject.org/files/ENCFF247FOM/@@download/ENCFF247FOM.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF598PSB bigBed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF489IMO 3233870 ENCODE Processing Pipeline f4594adf11881fd0a2bda108b01f1ead https://www.encodeproject.org/files/ENCFF598PSB/@@download/ENCFF598PSB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF145BWJ bigWig signal p-value ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018RET, ENCFF396QPU 582109481 ENCODE Processing Pipeline fafe8788c3ffa559e393edd6af7f624b https://www.encodeproject.org/files/ENCFF145BWJ/@@download/ENCFF145BWJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF374ODU bigBed narrowPeak peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF247FOM 3566903 ENCODE Processing Pipeline 21c82b766389b5b8dfd5af1c8b567a40 https://www.encodeproject.org/files/ENCFF374ODU/@@download/ENCFF374ODU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF192FPB bigWig signal p-value ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF633TTC 696512579 ENCODE Processing Pipeline f07d49f23ba286a1e502d886f172e1d4 https://www.encodeproject.org/files/ENCFF192FPB/@@download/ENCFF192FPB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF591NUC bigWig signal p-value ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF018RET, ENCFF231HNB, ENCFF396QPU, ENCFF633TTC 1240348940 ENCODE Processing Pipeline 01d125596db5229e2bc7cc1edbb5fdb8 https://www.encodeproject.org/files/ENCFF591NUC/@@download/ENCFF591NUC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF739PGC bigWig fold change over control ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF018RET, ENCFF396QPU 712094619 ENCODE Processing Pipeline 2ad98bfa40aa5fc4b03d7e99189392eb https://www.encodeproject.org/files/ENCFF739PGC/@@download/ENCFF739PGC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF713GLM bigWig fold change over control ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF231HNB, ENCFF633TTC 700355008 ENCODE Processing Pipeline 12f01815029df2681e306b18003490dd https://www.encodeproject.org/files/ENCFF713GLM/@@download/ENCFF713GLM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF345KLB bigWig fold change over control ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF018RET, ENCFF231HNB, ENCFF396QPU, ENCFF633TTC 1276701430 ENCODE Processing Pipeline eccb5899cef0cc31442d34421dfd5ae0 https://www.encodeproject.org/files/ENCFF345KLB/@@download/ENCFF345KLB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF515ZTF bed narrowPeak replicated peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF247FOM, ENCFF304OXD, ENCFF489IMO 1000372 ENCODE Processing Pipeline 32b2787398be3ca0b342ac9ee8780085 https://www.encodeproject.org/files/ENCFF515ZTF/@@download/ENCFF515ZTF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF946OCB bigBed narrowPeak replicated peaks ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF515ZTF 2030128 ENCODE Processing Pipeline 85985bf6fedfeb0cd13c46fd980cf9de https://www.encodeproject.org/files/ENCFF946OCB/@@download/ENCFF946OCB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002BXI fastq reads ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1397426666 Bing Ren, UCSD ce260370a1f097760f298a1652e5a5d8 SRA:SRR3652593 https://www.encodeproject.org/files/ENCFF002BXI/@@download/ENCFF002BXI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXW/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF045GWQ fastq reads ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 1049768598 Bing Ren, UCSD 44aa0d11d452bc5ee639aa39e39b62fc SRA:SRR3652594 https://www.encodeproject.org/files/ENCFF045GWQ/@@download/ENCFF045GWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF118FEW/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF668KXK bam alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXI, ENCFF806TVZ 1010090639 ENCODE Processing Pipeline a52906700acbccf73455dec1179aaaf0 https://www.encodeproject.org/files/ENCFF668KXK/@@download/ENCFF668KXK.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF575HNJ bam alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF045GWQ, ENCFF806TVZ 738020433 ENCODE Processing Pipeline 745eafa11bc84ccb026ef97506f80833 https://www.encodeproject.org/files/ENCFF575HNJ/@@download/ENCFF575HNJ.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF336GTW bed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF575HNJ, ENCFF578PIN 535682 ENCODE Processing Pipeline ed05f983ec02a654a694ef909845881f https://www.encodeproject.org/files/ENCFF336GTW/@@download/ENCFF336GTW.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF300QWO bed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF668KXK 577307 ENCODE Processing Pipeline 8655648e2f4d4b2fe8a351f039ebf1b6 https://www.encodeproject.org/files/ENCFF300QWO/@@download/ENCFF300QWO.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF695KTV bigBed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF503XZN 1754585 ENCODE Processing Pipeline f384feb61a7fcadba670894b4657b258 https://www.encodeproject.org/files/ENCFF695KTV/@@download/ENCFF695KTV.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF323QYM bigWig signal p-value ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF668KXK 415147420 ENCODE Processing Pipeline 4311243227c489b5127adf01017bce86 https://www.encodeproject.org/files/ENCFF323QYM/@@download/ENCFF323QYM.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF503XZN bed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF439PVF, ENCFF575HNJ, ENCFF578PIN, ENCFF668KXK 552966 ENCODE Processing Pipeline a89347bc6a8475640a9163522e6eb544 https://www.encodeproject.org/files/ENCFF503XZN/@@download/ENCFF503XZN.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF511PPS bigBed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF300QWO 1855688 ENCODE Processing Pipeline 1b1e958965d59ee123e6f773124b8740 https://www.encodeproject.org/files/ENCFF511PPS/@@download/ENCFF511PPS.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF984TWZ bigBed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF336GTW 1742534 ENCODE Processing Pipeline 1f134bf531912629a30de74b98d530d7 https://www.encodeproject.org/files/ENCFF984TWZ/@@download/ENCFF984TWZ.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF767ULA bigWig signal p-value ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF439PVF, ENCFF575HNJ, ENCFF578PIN, ENCFF668KXK 513464701 ENCODE Processing Pipeline 51215d1871a2a5f3c6b0b1fe81ccfd3e https://www.encodeproject.org/files/ENCFF767ULA/@@download/ENCFF767ULA.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF882BOD bigWig signal p-value ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF575HNJ, ENCFF578PIN 365599775 ENCODE Processing Pipeline d44f496d13eb27757af04b882b3103ac https://www.encodeproject.org/files/ENCFF882BOD/@@download/ENCFF882BOD.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF820HZX bigWig fold change over control ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF439PVF, ENCFF575HNJ, ENCFF578PIN 288932763 ENCODE Processing Pipeline 11754dff13fe1d8a2f31f14c8a3db7e2 https://www.encodeproject.org/files/ENCFF820HZX/@@download/ENCFF820HZX.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF008QCV bigWig fold change over control ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF439PVF, ENCFF575HNJ, ENCFF578PIN, ENCFF668KXK 545337669 ENCODE Processing Pipeline f338a0369519dfbf523f7c064ed00880 https://www.encodeproject.org/files/ENCFF008QCV/@@download/ENCFF008QCV.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF221CND bigWig fold change over control ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF439PVF, ENCFF578PIN, ENCFF668KXK 381791848 ENCODE Processing Pipeline 6e9dc6be507a93c79ef0baf1d118b595 https://www.encodeproject.org/files/ENCFF221CND/@@download/ENCFF221CND.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF182JFM bigBed narrowPeak replicated peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF042TCX 1641969 ENCODE Processing Pipeline 60c021f55507ff6a1265ed041e10018b https://www.encodeproject.org/files/ENCFF182JFM/@@download/ENCFF182JFM.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF042TCX bed narrowPeak replicated peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF300QWO, ENCFF336GTW, ENCFF503XZN 696161 ENCODE Processing Pipeline f268a3d0eb90c2ae9f8c23b1fe0a434f https://www.encodeproject.org/files/ENCFF042TCX/@@download/ENCFF042TCX.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF102MRJ bam unfiltered alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXI, ENCFF018NEO 1641285426 ENCODE Processing Pipeline 20936d885bb9c12b7482c3f431eae143 https://www.encodeproject.org/files/ENCFF102MRJ/@@download/ENCFF102MRJ.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF006GSW bam alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXI, ENCFF018NEO 1009898977 ENCODE Processing Pipeline 8d8224589d30e4ac2125d0bf09a73e9f https://www.encodeproject.org/files/ENCFF006GSW/@@download/ENCFF006GSW.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF392YYV bam unfiltered alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF045GWQ 949947770 ENCODE Processing Pipeline 13287a58b45c714678cd416d4c80db2d https://www.encodeproject.org/files/ENCFF392YYV/@@download/ENCFF392YYV.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF704RCP bam alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF045GWQ 593239748 ENCODE Processing Pipeline 910a06c8d21a459bc76d874872c8c3d8 https://www.encodeproject.org/files/ENCFF704RCP/@@download/ENCFF704RCP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF547YDK bed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF006GSW, ENCFF397HOQ, ENCFF749WCS 577087 ENCODE Processing Pipeline 9cad611ed18626491048459d898f130e https://www.encodeproject.org/files/ENCFF547YDK/@@download/ENCFF547YDK.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF290NYW bed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF704RCP, ENCFF749WCS 543741 ENCODE Processing Pipeline 0ac3953823e4e02869631d2f3ea76595 https://www.encodeproject.org/files/ENCFF290NYW/@@download/ENCFF290NYW.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF801XGL bigWig signal p-value ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF006GSW, ENCFF397HOQ, ENCFF704RCP, ENCFF749WCS 506527621 ENCODE Processing Pipeline f9cfe8db64f17db98ce41b2c066b07a2 https://www.encodeproject.org/files/ENCFF801XGL/@@download/ENCFF801XGL.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF190XOL bed narrowPeak replicated peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF290NYW, ENCFF547YDK, ENCFF818CUZ 696204 ENCODE Processing Pipeline 04605769c671e866cb51c10a0c23f26b https://www.encodeproject.org/files/ENCFF190XOL/@@download/ENCFF190XOL.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF818CUZ bed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF006GSW, ENCFF397HOQ, ENCFF704RCP, ENCFF749WCS 555351 ENCODE Processing Pipeline 614808af3d6693520e8810d08e5610bd https://www.encodeproject.org/files/ENCFF818CUZ/@@download/ENCFF818CUZ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF452WRP bigBed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF547YDK 1850622 ENCODE Processing Pipeline 100d1c214f8730324f16238d098182c0 https://www.encodeproject.org/files/ENCFF452WRP/@@download/ENCFF452WRP.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF885DIQ bigBed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF818CUZ 1758562 ENCODE Processing Pipeline 3b793e3f7aef0b1879bc1115a042a666 https://www.encodeproject.org/files/ENCFF885DIQ/@@download/ENCFF885DIQ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF689RCQ bigWig fold change over control ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF006GSW, ENCFF397HOQ, ENCFF749WCS 384607405 ENCODE Processing Pipeline 029f89582a777b08dd5022d43a99730c https://www.encodeproject.org/files/ENCFF689RCQ/@@download/ENCFF689RCQ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF223EJF bigWig fold change over control ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF704RCP, ENCFF749WCS 280066991 ENCODE Processing Pipeline 1d235148e0413f788d5263670fb337b8 https://www.encodeproject.org/files/ENCFF223EJF/@@download/ENCFF223EJF.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF781KOX bigBed narrowPeak peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF290NYW 1755962 ENCODE Processing Pipeline 4fc7ce14c6330f27168306b62eee0c0b https://www.encodeproject.org/files/ENCFF781KOX/@@download/ENCFF781KOX.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF898JII bigWig signal p-value ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF006GSW, ENCFF397HOQ, ENCFF749WCS 388434626 ENCODE Processing Pipeline 662ad3db0ffedc709751433e18dedc46 https://www.encodeproject.org/files/ENCFF898JII/@@download/ENCFF898JII.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF191GZY bigWig signal p-value ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF397HOQ, ENCFF704RCP, ENCFF749WCS 365155233 ENCODE Processing Pipeline 9197e7969f5ebbfa58d362df14477229 https://www.encodeproject.org/files/ENCFF191GZY/@@download/ENCFF191GZY.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF595HMJ bigBed narrowPeak replicated peaks ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF190XOL 1641501 ENCODE Processing Pipeline 936adb2aab69a2c5cbd7aa07d45a4b53 https://www.encodeproject.org/files/ENCFF595HMJ/@@download/ENCFF595HMJ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF644PLR bigWig fold change over control ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF006GSW, ENCFF397HOQ, ENCFF704RCP, ENCFF749WCS 538287055 ENCODE Processing Pipeline aa10108fd95fbbe3cb486f5acf967958 https://www.encodeproject.org/files/ENCFF644PLR/@@download/ENCFF644PLR.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF157WAC bam alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF721FSS, ENCFF806TVZ 2684406322 ENCODE Processing Pipeline 6bab52b48ce4389813565da3f380485b https://www.encodeproject.org/files/ENCFF157WAC/@@download/ENCFF157WAC.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF905XOU bam alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF435NZN, ENCFF806TVZ 2326866626 ENCODE Processing Pipeline b28afb600146a09be9b0f150bc02866a https://www.encodeproject.org/files/ENCFF905XOU/@@download/ENCFF905XOU.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF721FSS fastq reads ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3737283130 Bing Ren, UCSD b1a70ea2f188b30eaf8f28f2c2463eb4 SRA:SRR3651293 https://www.encodeproject.org/files/ENCFF721FSS/@@download/ENCFF721FSS.fastq.gz Illumina HiSeq 2500 /files/ENCFF393EAJ/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF435NZN fastq reads ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3665922545 Bing Ren, UCSD 96e58d64dc967c143db64d3f5f43e7bc SRA:SRR3651294 https://www.encodeproject.org/files/ENCFF435NZN/@@download/ENCFF435NZN.fastq.gz Illumina HiSeq 2500 /files/ENCFF545UQA/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF390BPP bed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF627MYB, ENCFF905XOU 1875115 ENCODE Processing Pipeline 6d9f4a4dd351b22aba733aa92e309102 https://www.encodeproject.org/files/ENCFF390BPP/@@download/ENCFF390BPP.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF390QDO bigBed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF247WUA 5308036 ENCODE Processing Pipeline 9183f7e1df471b8fbb3ca414714e6c39 https://www.encodeproject.org/files/ENCFF390QDO/@@download/ENCFF390QDO.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF247WUA bed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF157WAC, ENCFF371GCA, ENCFF627MYB 1908186 ENCODE Processing Pipeline f269eac60ec0e853a540322a4be3fe7a https://www.encodeproject.org/files/ENCFF247WUA/@@download/ENCFF247WUA.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF266JPP bed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF157WAC, ENCFF371GCA, ENCFF627MYB, ENCFF905XOU 1611079 ENCODE Processing Pipeline e29c45d23ae0f5a9d0e42b3ce06d6820 https://www.encodeproject.org/files/ENCFF266JPP/@@download/ENCFF266JPP.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF416SGI bigBed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF390BPP 5204650 ENCODE Processing Pipeline a2918609c84de8486d8500e997a940f6 https://www.encodeproject.org/files/ENCFF416SGI/@@download/ENCFF416SGI.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF262WKM bigBed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF266JPP 4458689 ENCODE Processing Pipeline 3986b1cdadd76cf1838edf4a75676389 https://www.encodeproject.org/files/ENCFF262WKM/@@download/ENCFF262WKM.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF390SGS bigWig signal p-value ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF627MYB, ENCFF905XOU 916775810 ENCODE Processing Pipeline 1fd38e07332345fada3cf1472c3b56ae https://www.encodeproject.org/files/ENCFF390SGS/@@download/ENCFF390SGS.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF869GRF bigWig signal p-value ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF157WAC, ENCFF371GCA, ENCFF627MYB 922207094 ENCODE Processing Pipeline ea7b8726678f07603496f9aa6eaeec8e https://www.encodeproject.org/files/ENCFF869GRF/@@download/ENCFF869GRF.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF361YRC bigWig signal p-value ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF157WAC, ENCFF371GCA, ENCFF627MYB, ENCFF905XOU 1220544611 ENCODE Processing Pipeline 4f58859e5e97acde9160e1d1b76b095b https://www.encodeproject.org/files/ENCFF361YRC/@@download/ENCFF361YRC.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF015YIP bigWig fold change over control ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF627MYB, ENCFF905XOU 942516117 ENCODE Processing Pipeline 758bb4ee0d009441099743995560cbba https://www.encodeproject.org/files/ENCFF015YIP/@@download/ENCFF015YIP.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF779AVS bigWig fold change over control ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF157WAC, ENCFF371GCA, ENCFF627MYB 992976430 ENCODE Processing Pipeline 07f284ec1c1894cdc8db579b4ffc4684 https://www.encodeproject.org/files/ENCFF779AVS/@@download/ENCFF779AVS.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF503XMG bed narrowPeak replicated peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF247WUA, ENCFF266JPP, ENCFF390BPP 1664664 ENCODE Processing Pipeline 26cacfe5a8c7705c99d40af5859c154d https://www.encodeproject.org/files/ENCFF503XMG/@@download/ENCFF503XMG.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF253ZJD bigWig fold change over control ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF157WAC, ENCFF371GCA, ENCFF627MYB, ENCFF905XOU 1498533486 ENCODE Processing Pipeline eed9e7d8d7d3a77b6b6148fb99c733a4 https://www.encodeproject.org/files/ENCFF253ZJD/@@download/ENCFF253ZJD.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF237LMK bigBed narrowPeak replicated peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF503XMG 3524899 ENCODE Processing Pipeline 96a7bee111ad1ad4713ebfc0c54de934 https://www.encodeproject.org/files/ENCFF237LMK/@@download/ENCFF237LMK.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF135NNU bam unfiltered alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF721FSS 4265676642 ENCODE Processing Pipeline 8341f3fe5cb12f623e23daf06f04d64b https://www.encodeproject.org/files/ENCFF135NNU/@@download/ENCFF135NNU.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF704KNS bam unfiltered alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF435NZN 4121412133 ENCODE Processing Pipeline d7e641cf9b23e4e2884ec73373eebe2c https://www.encodeproject.org/files/ENCFF704KNS/@@download/ENCFF704KNS.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF824QGV bam alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF721FSS 2683991630 ENCODE Processing Pipeline 08271dd557854c73710eeca4da16a349 https://www.encodeproject.org/files/ENCFF824QGV/@@download/ENCFF824QGV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF893CMD bam alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF435NZN 2326508105 ENCODE Processing Pipeline cbe7195b0daa122512a0b879f44b0814 https://www.encodeproject.org/files/ENCFF893CMD/@@download/ENCFF893CMD.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF656KZP bed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF884PDZ, ENCFF893CMD 1879854 ENCODE Processing Pipeline 61db71d998f2d0e72527bc1229b10ab5 https://www.encodeproject.org/files/ENCFF656KZP/@@download/ENCFF656KZP.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF749TBT bed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF824QGV 1462578 ENCODE Processing Pipeline 5d39a0289c35d7c027a87de0b6b8dc7a https://www.encodeproject.org/files/ENCFF749TBT/@@download/ENCFF749TBT.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF556NSG bed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF824QGV, ENCFF884PDZ, ENCFF893CMD 2006749 ENCODE Processing Pipeline 57aebf031c1ea53c9b4a082716fb1997 https://www.encodeproject.org/files/ENCFF556NSG/@@download/ENCFF556NSG.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF130BYN bigBed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF656KZP 5203488 ENCODE Processing Pipeline 115fb8854b9522eb2cffa7a13b7cdc8c https://www.encodeproject.org/files/ENCFF130BYN/@@download/ENCFF130BYN.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF035LNM bigBed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF556NSG 5433711 ENCODE Processing Pipeline 07d4490ca2741c385bf4766390623571 https://www.encodeproject.org/files/ENCFF035LNM/@@download/ENCFF035LNM.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF978XGH bigBed narrowPeak peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF749TBT 4162219 ENCODE Processing Pipeline 7b1a55a49d72b6a05a2a1facdbcc894c https://www.encodeproject.org/files/ENCFF978XGH/@@download/ENCFF978XGH.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF468WPD bigWig signal p-value ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF884PDZ, ENCFF893CMD 735631015 ENCODE Processing Pipeline 97119ddb2d321731ca73259092cf4573 https://www.encodeproject.org/files/ENCFF468WPD/@@download/ENCFF468WPD.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF863TFB bigWig signal p-value ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF824QGV 841072846 ENCODE Processing Pipeline 691ef9cf2262c3510e563b2d21194889 https://www.encodeproject.org/files/ENCFF863TFB/@@download/ENCFF863TFB.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF576GWH bigWig signal p-value ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF824QGV, ENCFF884PDZ, ENCFF893CMD 1425796032 ENCODE Processing Pipeline 0f125fc240bc23910d91be766a1726d3 https://www.encodeproject.org/files/ENCFF576GWH/@@download/ENCFF576GWH.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF101CXU bigWig fold change over control ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF884PDZ, ENCFF893CMD 979373529 ENCODE Processing Pipeline 5909ee3f56fce93b79cea3bb798b296d https://www.encodeproject.org/files/ENCFF101CXU/@@download/ENCFF101CXU.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF667VOP bigWig fold change over control ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF824QGV 899494306 ENCODE Processing Pipeline 4220acce4cee0887dace70f99d864fa2 https://www.encodeproject.org/files/ENCFF667VOP/@@download/ENCFF667VOP.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF045OSV bigWig fold change over control ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF824QGV, ENCFF884PDZ, ENCFF893CMD 1519205563 ENCODE Processing Pipeline a143c2a144d78f6cfeb3a093e77a2a5d https://www.encodeproject.org/files/ENCFF045OSV/@@download/ENCFF045OSV.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF602RZE bed narrowPeak replicated peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF556NSG, ENCFF656KZP, ENCFF749TBT 1637112 ENCODE Processing Pipeline 1091099d32fd6b7af3cd85ce4aaa0d5d https://www.encodeproject.org/files/ENCFF602RZE/@@download/ENCFF602RZE.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF953LVF bigBed narrowPeak replicated peaks ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF602RZE 3438800 ENCODE Processing Pipeline ca0522985e204287f150686abc4c3de1 https://www.encodeproject.org/files/ENCFF953LVF/@@download/ENCFF953LVF.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF227UFA fastq reads ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2237348738 Bing Ren, UCSD 2ab159f274084845ad24991669209000 SRA:SRR3651835 https://www.encodeproject.org/files/ENCFF227UFA/@@download/ENCFF227UFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF532FXB/, /files/ENCFF905ZVU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF851XEK fastq reads ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2276834847 Bing Ren, UCSD 679eb4a632cebbcf1d26235b8382027f SRA:SRR3651836 https://www.encodeproject.org/files/ENCFF851XEK/@@download/ENCFF851XEK.fastq.gz Illumina HiSeq 2000 /files/ENCFF418BAW/ released mild to moderate bottlenecking, inconsistent platforms ENCFF963HWO bam alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF227UFA, ENCFF806TVZ 1586419370 ENCODE Processing Pipeline d62d3e12a4e1a9d5688b2f3f2b536af0 https://www.encodeproject.org/files/ENCFF963HWO/@@download/ENCFF963HWO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF174JBQ bam alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF851XEK 1647677403 ENCODE Processing Pipeline 8060271148e558dcb43f47c36a0a1988 https://www.encodeproject.org/files/ENCFF174JBQ/@@download/ENCFF174JBQ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF786WCI bigBed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF642IEK 1745618 ENCODE Processing Pipeline 690b362fa8d2e95dbc8540392a8f2672 https://www.encodeproject.org/files/ENCFF786WCI/@@download/ENCFF786WCI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF912XLJ bigWig signal p-value ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF174JBQ, ENCFF844LBC 431356775 ENCODE Processing Pipeline 3cd063bb9e6afcec6845720f4dec76b7 https://www.encodeproject.org/files/ENCFF912XLJ/@@download/ENCFF912XLJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF889IBY bed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF455EJT, ENCFF963HWO 542612 ENCODE Processing Pipeline e8ba407533ecef2381f6c04a946164b2 https://www.encodeproject.org/files/ENCFF889IBY/@@download/ENCFF889IBY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF142SFX bigBed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF889IBY 1763244 ENCODE Processing Pipeline f86c7961606a9d74e48ab8739b3a481a https://www.encodeproject.org/files/ENCFF142SFX/@@download/ENCFF142SFX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF642IEK bed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF174JBQ, ENCFF844LBC 542293 ENCODE Processing Pipeline 603351bb3ae405bd95d108ecd630f023 https://www.encodeproject.org/files/ENCFF642IEK/@@download/ENCFF642IEK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF007SNL bigBed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF346DHG 1861080 ENCODE Processing Pipeline 59a59e09beaf9f35f815087379990790 https://www.encodeproject.org/files/ENCFF007SNL/@@download/ENCFF007SNL.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF346DHG bed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF174JBQ, ENCFF455EJT, ENCFF844LBC, ENCFF963HWO 588184 ENCODE Processing Pipeline d79c1393ab8c3db0b6db93908d18e767 https://www.encodeproject.org/files/ENCFF346DHG/@@download/ENCFF346DHG.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF092JZC bigWig signal p-value ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF455EJT, ENCFF963HWO 572497615 ENCODE Processing Pipeline ce8e1090071352ecaa4d8d07c2f29b76 https://www.encodeproject.org/files/ENCFF092JZC/@@download/ENCFF092JZC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF291GSU bigWig signal p-value ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF174JBQ, ENCFF455EJT, ENCFF844LBC, ENCFF963HWO 702874276 ENCODE Processing Pipeline 4e03865218e1407a4d589b965912154e https://www.encodeproject.org/files/ENCFF291GSU/@@download/ENCFF291GSU.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF281RTG bigWig fold change over control ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF455EJT, ENCFF963HWO 489646306 ENCODE Processing Pipeline 9a28215c849356e97dcfc0f22fd5b729 https://www.encodeproject.org/files/ENCFF281RTG/@@download/ENCFF281RTG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF235DOZ bigWig fold change over control ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF174JBQ, ENCFF844LBC 507141496 ENCODE Processing Pipeline 128a2eeae922b1a50523090334007765 https://www.encodeproject.org/files/ENCFF235DOZ/@@download/ENCFF235DOZ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF233PKF bigWig fold change over control ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF174JBQ, ENCFF455EJT, ENCFF844LBC, ENCFF963HWO 929012413 ENCODE Processing Pipeline ec0ffac5975b45347ca8cff23475f770 https://www.encodeproject.org/files/ENCFF233PKF/@@download/ENCFF233PKF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF453OTG bed narrowPeak replicated peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF346DHG, ENCFF642IEK, ENCFF889IBY 632980 ENCODE Processing Pipeline a43f0744a799329c3b4b7b4aacdf8b87 https://www.encodeproject.org/files/ENCFF453OTG/@@download/ENCFF453OTG.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF129FXV bigBed narrowPeak replicated peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF453OTG 1556088 ENCODE Processing Pipeline 8cdf96e813d9815d469ee9a116c2c2db https://www.encodeproject.org/files/ENCFF129FXV/@@download/ENCFF129FXV.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF602EBV bam unfiltered alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF851XEK 2571201897 ENCODE Processing Pipeline 43ae5c656e7dbc625b83de9c845afa50 https://www.encodeproject.org/files/ENCFF602EBV/@@download/ENCFF602EBV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF563RDQ bam unfiltered alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF227UFA 2495939123 ENCODE Processing Pipeline c88c529543122c3362feb3f9963fb9fb https://www.encodeproject.org/files/ENCFF563RDQ/@@download/ENCFF563RDQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF378EDH bam alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF851XEK 1647214180 ENCODE Processing Pipeline 9a602bd103c83280f8b1951ed728ea31 https://www.encodeproject.org/files/ENCFF378EDH/@@download/ENCFF378EDH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF483RME bam alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF227UFA 1586012150 ENCODE Processing Pipeline 85e2f2a0b71ac1865f285d4ad890873e https://www.encodeproject.org/files/ENCFF483RME/@@download/ENCFF483RME.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF306FVW bed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF483RME 552954 ENCODE Processing Pipeline 32f6335f1a983cfa5c7277fc7bdfcf63 https://www.encodeproject.org/files/ENCFF306FVW/@@download/ENCFF306FVW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF085HAP bed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF378EDH 554753 ENCODE Processing Pipeline 162825cf4dddb59de129e696d3c881eb https://www.encodeproject.org/files/ENCFF085HAP/@@download/ENCFF085HAP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF633WBG bed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF378EDH, ENCFF483RME 597720 ENCODE Processing Pipeline 0d5a55cf9f897eadc3a449ddc2ac72f6 https://www.encodeproject.org/files/ENCFF633WBG/@@download/ENCFF633WBG.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF588YQR bigBed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF306FVW 1788602 ENCODE Processing Pipeline 8a8db7bc207e2352134cfc683b29e72d https://www.encodeproject.org/files/ENCFF588YQR/@@download/ENCFF588YQR.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF857QPU bigBed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF085HAP 1767258 ENCODE Processing Pipeline 5a64fc6383da4adee0347003b968512a https://www.encodeproject.org/files/ENCFF857QPU/@@download/ENCFF857QPU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF501XZQ bigBed narrowPeak peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF633WBG 1870097 ENCODE Processing Pipeline c89409d48f220b86ff7e9e280f3eae05 https://www.encodeproject.org/files/ENCFF501XZQ/@@download/ENCFF501XZQ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF618WGP bigWig signal p-value ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF483RME 601959484 ENCODE Processing Pipeline 58736f7df820b9fada9fdedfe08248b3 https://www.encodeproject.org/files/ENCFF618WGP/@@download/ENCFF618WGP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF589NJG bigWig signal p-value ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF378EDH 534358245 ENCODE Processing Pipeline eca103acbc9694218d7d0584ca982ec6 https://www.encodeproject.org/files/ENCFF589NJG/@@download/ENCFF589NJG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF077EWV bigWig signal p-value ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF378EDH, ENCFF483RME 1040302679 ENCODE Processing Pipeline 7314c9560bd1b9625a99843dee761764 https://www.encodeproject.org/files/ENCFF077EWV/@@download/ENCFF077EWV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF070URV bigWig fold change over control ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF160VSE, ENCFF483RME 539848375 ENCODE Processing Pipeline a1254b3915658f784210e6015014adbd https://www.encodeproject.org/files/ENCFF070URV/@@download/ENCFF070URV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF090QWL bigWig fold change over control ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF048BGA, ENCFF378EDH 608484582 ENCODE Processing Pipeline 4d8b78a277bed54bda51d2f4322434c1 https://www.encodeproject.org/files/ENCFF090QWL/@@download/ENCFF090QWL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF356LUU bigWig fold change over control ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF048BGA, ENCFF160VSE, ENCFF378EDH, ENCFF483RME 1048662262 ENCODE Processing Pipeline 344d029b6434138eeff935a434c8708b https://www.encodeproject.org/files/ENCFF356LUU/@@download/ENCFF356LUU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF945KFR bed narrowPeak replicated peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF085HAP, ENCFF306FVW, ENCFF633WBG 652124 ENCODE Processing Pipeline f89fa71ea85b784cebe9645d54d10f5c https://www.encodeproject.org/files/ENCFF945KFR/@@download/ENCFF945KFR.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF953RPU bigBed narrowPeak replicated peaks ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF945KFR 1583643 ENCODE Processing Pipeline 25ed1a091f8f94888e70d76fcfefe225 https://www.encodeproject.org/files/ENCFF953RPU/@@download/ENCFF953RPU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001ZRB fastq reads ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 785820339 Bing Ren, UCSD 58649d11c3cf281785a5a4d8a656f588 SRA:SRR3651310 https://www.encodeproject.org/files/ENCFF001ZRB/@@download/ENCFF001ZRB.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001ZRL fastq reads ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 771278317 Bing Ren, UCSD a5ffb0e5f0b2d08f68a603e59a0ca3cc SRA:SRR3651309 https://www.encodeproject.org/files/ENCFF001ZRL/@@download/ENCFF001ZRL.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF784QSD bam alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZRL, ENCFF806TVZ 636232404 ENCODE Processing Pipeline 7ac4ab7a02f5c1a82045491cfb357ef4 https://www.encodeproject.org/files/ENCFF784QSD/@@download/ENCFF784QSD.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF457CFQ bam alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZRB, ENCFF806TVZ 601177490 ENCODE Processing Pipeline e5bb4362a599d32d552694b43f0ba36e https://www.encodeproject.org/files/ENCFF457CFQ/@@download/ENCFF457CFQ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF938XTY bigBed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF314GTF 3517813 ENCODE Processing Pipeline 5219afeb69777b2e3af38cdae1530f9f https://www.encodeproject.org/files/ENCFF938XTY/@@download/ENCFF938XTY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF521HTI bed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF457CFQ, ENCFF784QSD, ENCFF807GND, ENCFF841RBB 1075033 ENCODE Processing Pipeline a59e7bd09e632cb3ad59f05aaed6c0c8 https://www.encodeproject.org/files/ENCFF521HTI/@@download/ENCFF521HTI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF071JFM bed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF457CFQ, ENCFF807GND, ENCFF841RBB 955667 ENCODE Processing Pipeline 8c34fd7e60171b6cfbc4874b27c77fe0 https://www.encodeproject.org/files/ENCFF071JFM/@@download/ENCFF071JFM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF183RUA bigBed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF071JFM 2291151 ENCODE Processing Pipeline 53b02db23cccceef6f94ffe7d7b767ef https://www.encodeproject.org/files/ENCFF183RUA/@@download/ENCFF183RUA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF314GTF bed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF784QSD, ENCFF807GND, ENCFF841RBB 1240100 ENCODE Processing Pipeline 52b61e82a86c21da24c8c389e332c293 https://www.encodeproject.org/files/ENCFF314GTF/@@download/ENCFF314GTF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF663JWA bigBed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF521HTI 3043251 ENCODE Processing Pipeline 2d11daa4a04a66397f63927e33c5b82b https://www.encodeproject.org/files/ENCFF663JWA/@@download/ENCFF663JWA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF122RVV bigWig signal p-value ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF457CFQ, ENCFF807GND, ENCFF841RBB 416273029 ENCODE Processing Pipeline a09265ddae11724a3bb402048e06fabe https://www.encodeproject.org/files/ENCFF122RVV/@@download/ENCFF122RVV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF227QXL bigWig signal p-value ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF457CFQ, ENCFF784QSD, ENCFF807GND, ENCFF841RBB 536898249 ENCODE Processing Pipeline 9358e5370d6490e986a50e2878a31c13 https://www.encodeproject.org/files/ENCFF227QXL/@@download/ENCFF227QXL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF168YLY bigWig signal p-value ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF784QSD, ENCFF807GND, ENCFF841RBB 424222598 ENCODE Processing Pipeline 6d5ea958dc07e281e6d2839e8bc17c63 https://www.encodeproject.org/files/ENCFF168YLY/@@download/ENCFF168YLY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF169JGP bigWig fold change over control ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF457CFQ, ENCFF807GND, ENCFF841RBB 325059028 ENCODE Processing Pipeline 9fe9dc10b40f4e2ef4cea5a9c452f05c https://www.encodeproject.org/files/ENCFF169JGP/@@download/ENCFF169JGP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF967XXE bigWig fold change over control ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF784QSD, ENCFF807GND, ENCFF841RBB 328259510 ENCODE Processing Pipeline 0db88c2d0b569e0cc68b64e838728815 https://www.encodeproject.org/files/ENCFF967XXE/@@download/ENCFF967XXE.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF900YFF bigBed narrowPeak replicated peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF682NWN 1986400 ENCODE Processing Pipeline 009e10e91ca47e421492e897e58f0b22 https://www.encodeproject.org/files/ENCFF900YFF/@@download/ENCFF900YFF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF682NWN bed narrowPeak replicated peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF071JFM, ENCFF314GTF, ENCFF521HTI 866369 ENCODE Processing Pipeline d2d0d9d92cf4fca6fecd9c8fb1539947 https://www.encodeproject.org/files/ENCFF682NWN/@@download/ENCFF682NWN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF919SUC bigWig fold change over control ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF457CFQ, ENCFF784QSD, ENCFF807GND, ENCFF841RBB 533897497 ENCODE Processing Pipeline 1125b36fc992ae27435aafc2e2ec81ec https://www.encodeproject.org/files/ENCFF919SUC/@@download/ENCFF919SUC.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF660UTV bam unfiltered alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRB, ENCFF018NEO 996759874 ENCODE Processing Pipeline f111bee391c8190beac3eb9efd800a78 https://www.encodeproject.org/files/ENCFF660UTV/@@download/ENCFF660UTV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF231ZOY bam unfiltered alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRL, ENCFF018NEO 982788908 ENCODE Processing Pipeline c23d26b37b94d39a3bc4e968d39eb3b1 https://www.encodeproject.org/files/ENCFF231ZOY/@@download/ENCFF231ZOY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF244KMU bam alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRB, ENCFF018NEO 601013663 ENCODE Processing Pipeline 28f62d414d16fbcde5d4e3be6e4d66dc https://www.encodeproject.org/files/ENCFF244KMU/@@download/ENCFF244KMU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF922NBA bam alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRL, ENCFF018NEO 636095195 ENCODE Processing Pipeline db5dfd38c9b6cd63b109277b39a296bb https://www.encodeproject.org/files/ENCFF922NBA/@@download/ENCFF922NBA.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF513QGN bed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF244KMU, ENCFF804FRH 955942 ENCODE Processing Pipeline a5757011c17a73da958acb9900fff1b8 https://www.encodeproject.org/files/ENCFF513QGN/@@download/ENCFF513QGN.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF502TTS bed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804FRH, ENCFF922NBA 830713 ENCODE Processing Pipeline a8b29afd0e46df6d4b1d96ad782d0ebe https://www.encodeproject.org/files/ENCFF502TTS/@@download/ENCFF502TTS.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF008TXK bed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF244KMU, ENCFF804FRH, ENCFF922NBA 1075103 ENCODE Processing Pipeline 7af02ff7778ae87c5e3d9b5467a6ccda https://www.encodeproject.org/files/ENCFF008TXK/@@download/ENCFF008TXK.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF725HGU bigBed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF513QGN 2292542 ENCODE Processing Pipeline 6675d036e5207ec4dd999ef9fcdf3f6d https://www.encodeproject.org/files/ENCFF725HGU/@@download/ENCFF725HGU.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF626OLY bigBed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF502TTS 2415732 ENCODE Processing Pipeline 36d01edad0cbc8ee7726bc15533066ac https://www.encodeproject.org/files/ENCFF626OLY/@@download/ENCFF626OLY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF971INX bigBed narrowPeak peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF008TXK 3044862 ENCODE Processing Pipeline d58e4bdc71f4ab98491c8a258285ab2d https://www.encodeproject.org/files/ENCFF971INX/@@download/ENCFF971INX.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF397UDP bigWig signal p-value ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF244KMU, ENCFF804FRH 364314420 ENCODE Processing Pipeline 04968454d107c715ed8f1c03a6269a50 https://www.encodeproject.org/files/ENCFF397UDP/@@download/ENCFF397UDP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF575TYK bigWig signal p-value ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804FRH, ENCFF922NBA 255808163 ENCODE Processing Pipeline dc36555a6799d3e6af9c6b3155c0d35c https://www.encodeproject.org/files/ENCFF575TYK/@@download/ENCFF575TYK.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF341XUE bigWig signal p-value ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF244KMU, ENCFF804FRH, ENCFF922NBA 537017733 ENCODE Processing Pipeline 1ae6352dd5690d2b6d7cb388ac60e6ae https://www.encodeproject.org/files/ENCFF341XUE/@@download/ENCFF341XUE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF427DMV bigWig fold change over control ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF244KMU, ENCFF804FRH 325492310 ENCODE Processing Pipeline dcb8ea1259f2288f37bbe77ea2f609a7 https://www.encodeproject.org/files/ENCFF427DMV/@@download/ENCFF427DMV.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF493RTA bigWig fold change over control ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804FRH, ENCFF922NBA 247457243 ENCODE Processing Pipeline 8e16f973e23b82eb4f8ac07a992de97f https://www.encodeproject.org/files/ENCFF493RTA/@@download/ENCFF493RTA.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF274AWM bigWig fold change over control ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF244KMU, ENCFF804FRH, ENCFF922NBA 531562823 ENCODE Processing Pipeline 8e8b55f81b07690b6aa5342b046430e5 https://www.encodeproject.org/files/ENCFF274AWM/@@download/ENCFF274AWM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF241YYJ bed narrowPeak replicated peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF008TXK, ENCFF502TTS, ENCFF513QGN 824829 ENCODE Processing Pipeline fcb074e143b6e9b1913d8ec7ece1f6fd https://www.encodeproject.org/files/ENCFF241YYJ/@@download/ENCFF241YYJ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF573PPG bigBed narrowPeak replicated peaks ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF241YYJ 1901075 ENCODE Processing Pipeline 96db3367db1615b7e288bc3b2ebf057c https://www.encodeproject.org/files/ENCFF573PPG/@@download/ENCFF573PPG.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001KBY bam alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KCF 349542208 Bing Ren, UCSD d56b7a9116df499bdb4fc1679efdb12a https://www.encodeproject.org/files/ENCFF001KBY/@@download/ENCFF001KBY.bam mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KBZ bam alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KCG 370086350 Bing Ren, UCSD 85e9bd19ba9dc5a785c526b80a88e88f https://www.encodeproject.org/files/ENCFF001KBZ/@@download/ENCFF001KBZ.bam mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KCA bigBed broadPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XWL 690569 Bing Ren, UCSD c094bd0cbd3c1c872a285770b258a0a7 https://www.encodeproject.org/files/ENCFF001KCA/@@download/ENCFF001KCA.bigBed mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KCD bigWig signal ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KBY, ENCFF001KBZ 53323794 Bing Ren, UCSD 7d5ef40696349a2e8534e1c52bc1755b https://www.encodeproject.org/files/ENCFF001KCD/@@download/ENCFF001KCD.bigWig mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KCF fastq reads ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 325076256 Bing Ren, UCSD aacde9e4ecbb6f40d00f53730ae43cb0 https://www.encodeproject.org/files/ENCFF001KCF/@@download/ENCFF001KCF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCX/ released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001KCG fastq reads ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 345121029 Bing Ren, UCSD 84d44410563eec17a3b6a143873fc5c4 https://www.encodeproject.org/files/ENCFF001KCG/@@download/ENCFF001KCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KDF/ released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001XWL bed broadPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KBY, ENCFF001KBZ 424027 Bing Ren, UCSD bb7eeda4e8e28f79ee847c6a0d2a58bb https://www.encodeproject.org/files/ENCFF001XWL/@@download/ENCFF001XWL.bed.gz mm9 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF486XZA bam unfiltered alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KCG, ENCFF018NEO 400377786 ENCODE Processing Pipeline 3115c93d69a18781c12fea8f5ea73115 https://www.encodeproject.org/files/ENCFF486XZA/@@download/ENCFF486XZA.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF736QEF bam unfiltered alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KCF, ENCFF018NEO 376722807 ENCODE Processing Pipeline dab12d1ffeab83b098135799f1e92867 https://www.encodeproject.org/files/ENCFF736QEF/@@download/ENCFF736QEF.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF918TDQ bam alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KCF, ENCFF018NEO 296194647 ENCODE Processing Pipeline 1ebfee46ae7aca8f1c86b854956529a9 https://www.encodeproject.org/files/ENCFF918TDQ/@@download/ENCFF918TDQ.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF225WZQ bam alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KCG, ENCFF018NEO 308907604 ENCODE Processing Pipeline 74f617ee0d1fdb6946b5d89d240d737e https://www.encodeproject.org/files/ENCFF225WZQ/@@download/ENCFF225WZQ.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF648NLJ bigWig signal p-value ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF225WZQ, ENCFF555HBY, ENCFF745XER 277374654 ENCODE Processing Pipeline bd9664e469969423ae0c1a73bd17a8a3 https://www.encodeproject.org/files/ENCFF648NLJ/@@download/ENCFF648NLJ.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF101UAV bigWig fold change over control ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF555HBY, ENCFF745XER, ENCFF918TDQ 200368593 ENCODE Processing Pipeline 08fc1a81ae2fb71efa334430553472d7 https://www.encodeproject.org/files/ENCFF101UAV/@@download/ENCFF101UAV.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF050PVF bigBed narrowPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF239GWO 4612534 ENCODE Processing Pipeline acbbdbacbcef53f69436194c7ebd5cfb https://www.encodeproject.org/files/ENCFF050PVF/@@download/ENCFF050PVF.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF153NIK bigBed narrowPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF738KWD 4448060 ENCODE Processing Pipeline 1dc97ac43ee30d18c794a2492ab94487 https://www.encodeproject.org/files/ENCFF153NIK/@@download/ENCFF153NIK.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF738KWD bed narrowPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF225WZQ, ENCFF555HBY, ENCFF745XER 1466940 ENCODE Processing Pipeline 1c33e715532b5bb5e5c886b3aa011122 https://www.encodeproject.org/files/ENCFF738KWD/@@download/ENCFF738KWD.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF731MDF bigWig signal p-value ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF555HBY, ENCFF745XER, ENCFF918TDQ 293019857 ENCODE Processing Pipeline f498297f178a3535ee83597b512e5bfb https://www.encodeproject.org/files/ENCFF731MDF/@@download/ENCFF731MDF.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF239GWO bed narrowPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF555HBY, ENCFF745XER, ENCFF918TDQ 1542142 ENCODE Processing Pipeline 29b27a803780ff621c396b71d53700f5 https://www.encodeproject.org/files/ENCFF239GWO/@@download/ENCFF239GWO.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF784IEZ bed narrowPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF225WZQ, ENCFF555HBY, ENCFF745XER, ENCFF918TDQ 1761480 ENCODE Processing Pipeline 3e489d04e241caa1bc80801ccb5e162e https://www.encodeproject.org/files/ENCFF784IEZ/@@download/ENCFF784IEZ.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF317KOW bigBed narrowPeak peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF784IEZ 5058680 ENCODE Processing Pipeline 4c332736f730962adf0d06d3b1e5a83a https://www.encodeproject.org/files/ENCFF317KOW/@@download/ENCFF317KOW.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF911RSG bigWig signal p-value ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF225WZQ, ENCFF555HBY, ENCFF745XER, ENCFF918TDQ 359211443 ENCODE Processing Pipeline 34766ce120e353d860f4765beba5d167 https://www.encodeproject.org/files/ENCFF911RSG/@@download/ENCFF911RSG.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF725TCY bigWig fold change over control ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF225WZQ, ENCFF555HBY, ENCFF745XER 208718783 ENCODE Processing Pipeline a79d72b23838e9b8322283ae07a1dbd9 https://www.encodeproject.org/files/ENCFF725TCY/@@download/ENCFF725TCY.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF619CVT bigWig fold change over control ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF225WZQ, ENCFF555HBY, ENCFF745XER, ENCFF918TDQ 331516358 ENCODE Processing Pipeline 80baaa3efca2e2542da822a9ef1790e1 https://www.encodeproject.org/files/ENCFF619CVT/@@download/ENCFF619CVT.bigWig mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF314HSG bigBed narrowPeak replicated peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF199XZU 3074318 ENCODE Processing Pipeline 50e7ce6d55ac406763271a2dca6933e4 https://www.encodeproject.org/files/ENCFF314HSG/@@download/ENCFF314HSG.bigBed mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF199XZU bed narrowPeak replicated peaks ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF239GWO, ENCFF738KWD, ENCFF784IEZ 1392605 ENCODE Processing Pipeline f238d5428668b59a427ac089d28efdbc https://www.encodeproject.org/files/ENCFF199XZU/@@download/ENCFF199XZU.bed.gz mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF001ZUD fastq reads ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 901015447 Bing Ren, UCSD 4c519696436ee06ca8789a432f0df71a SRA:SRR3653276 https://www.encodeproject.org/files/ENCFF001ZUD/@@download/ENCFF001ZUD.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUX/ released low read length, low read depth ENCFF001ZUG fastq reads ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 772315089 Bing Ren, UCSD a7d5d1130a1bbe81fd9824dabc11c8fb SRA:SRR3653275 https://www.encodeproject.org/files/ENCFF001ZUG/@@download/ENCFF001ZUG.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVB/ released low read length, low read depth ENCFF467EFM bam alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUD, ENCFF806TVZ 710135996 ENCODE Processing Pipeline 00b6d80c73b63e032d12c028badd00f2 https://www.encodeproject.org/files/ENCFF467EFM/@@download/ENCFF467EFM.bam mm10-minimal archived low read length, low read depth ENCFF450XZS bam alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUG, ENCFF806TVZ 604666312 ENCODE Processing Pipeline 1d053d2a957a6dc7465bbf27ace48816 https://www.encodeproject.org/files/ENCFF450XZS/@@download/ENCFF450XZS.bam mm10-minimal archived low read length, low read depth ENCFF204OCS bed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF467EFM, ENCFF656MYX, ENCFF844PWX 475549 ENCODE Processing Pipeline 8827a757051183e5d821678d411b36b7 https://www.encodeproject.org/files/ENCFF204OCS/@@download/ENCFF204OCS.bed.gz mm10-minimal archived low read length, low read depth ENCFF021YWT bigBed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF204OCS 1585940 ENCODE Processing Pipeline a071ecc4f2886a701657e025c3e5ba77 https://www.encodeproject.org/files/ENCFF021YWT/@@download/ENCFF021YWT.bigBed mm10-minimal archived low read length, low read depth ENCFF930JNV bed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF450XZS, ENCFF656MYX, ENCFF844PWX 487631 ENCODE Processing Pipeline 0975714b0dd78f880bf6fb2522ef7ea8 https://www.encodeproject.org/files/ENCFF930JNV/@@download/ENCFF930JNV.bed.gz mm10-minimal archived low read length, low read depth ENCFF130BEN bigWig signal p-value ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF450XZS, ENCFF467EFM, ENCFF656MYX, ENCFF844PWX 499306680 ENCODE Processing Pipeline a7c3d5e55338e484bf8a434160ddf58e https://www.encodeproject.org/files/ENCFF130BEN/@@download/ENCFF130BEN.bigWig mm10-minimal archived low read length, low read depth ENCFF463FNS bed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF450XZS, ENCFF467EFM, ENCFF656MYX, ENCFF844PWX 471328 ENCODE Processing Pipeline 3687356dd3c0ba4123b327082ed0058a https://www.encodeproject.org/files/ENCFF463FNS/@@download/ENCFF463FNS.bed.gz mm10-minimal archived low read length, low read depth ENCFF711KWS bigBed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF930JNV 1620856 ENCODE Processing Pipeline c3b877f5086ce22d8d0fe37305b8ed88 https://www.encodeproject.org/files/ENCFF711KWS/@@download/ENCFF711KWS.bigBed mm10-minimal archived low read length, low read depth ENCFF660TCG bigBed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF463FNS 1555798 ENCODE Processing Pipeline a7e5422ce0b2899f05051655048628d7 https://www.encodeproject.org/files/ENCFF660TCG/@@download/ENCFF660TCG.bigBed mm10-minimal archived low read length, low read depth ENCFF298PCK bigWig fold change over control ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF450XZS, ENCFF467EFM, ENCFF656MYX, ENCFF844PWX 503695915 ENCODE Processing Pipeline 75da041d31fd4c2b10c4e0b3de230f4f https://www.encodeproject.org/files/ENCFF298PCK/@@download/ENCFF298PCK.bigWig mm10-minimal archived low read length, low read depth ENCFF918YCK bigBed narrowPeak replicated peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF751SFH 1418263 ENCODE Processing Pipeline 676d3cac5cdcc9a538c391491045c09d https://www.encodeproject.org/files/ENCFF918YCK/@@download/ENCFF918YCK.bigBed mm10-minimal archived low read length, low read depth ENCFF626GOQ bigWig signal p-value ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF467EFM, ENCFF656MYX, ENCFF844PWX 346640640 ENCODE Processing Pipeline fab666712a50d94125d9b70f8fc3727d https://www.encodeproject.org/files/ENCFF626GOQ/@@download/ENCFF626GOQ.bigWig mm10-minimal archived low read length, low read depth ENCFF044SEZ bigWig signal p-value ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF450XZS, ENCFF656MYX, ENCFF844PWX 363168586 ENCODE Processing Pipeline a1eee8d130611ba683150f8fe9391d95 https://www.encodeproject.org/files/ENCFF044SEZ/@@download/ENCFF044SEZ.bigWig mm10-minimal archived low read length, low read depth ENCFF203SSG bigWig fold change over control ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF467EFM, ENCFF656MYX, ENCFF844PWX 327796429 ENCODE Processing Pipeline dc8cb9a64c32c84e8e25792e72b895dd https://www.encodeproject.org/files/ENCFF203SSG/@@download/ENCFF203SSG.bigWig mm10-minimal archived low read length, low read depth ENCFF955IAH bigWig fold change over control ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF450XZS, ENCFF656MYX, ENCFF844PWX 286185722 ENCODE Processing Pipeline 65813f20bf595ca0b299a5f2e1c2ca1d https://www.encodeproject.org/files/ENCFF955IAH/@@download/ENCFF955IAH.bigWig mm10-minimal archived low read length, low read depth ENCFF751SFH bed narrowPeak replicated peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF204OCS, ENCFF463FNS, ENCFF930JNV 568252 ENCODE Processing Pipeline 0ebf4d9d86ba28b2ef26a2ca46cc3e66 https://www.encodeproject.org/files/ENCFF751SFH/@@download/ENCFF751SFH.bed.gz mm10-minimal archived low read length, low read depth ENCFF363IXW bam unfiltered alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUG, ENCFF018NEO 960815140 ENCODE Processing Pipeline 1927072c4186915a83b0a48342f2f25a https://www.encodeproject.org/files/ENCFF363IXW/@@download/ENCFF363IXW.bam mm10 released low read length, low read depth ENCFF988HIN bam unfiltered alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUD, ENCFF018NEO 1104228218 ENCODE Processing Pipeline a5d1cac737c7f06f6cc0ccf20447c976 https://www.encodeproject.org/files/ENCFF988HIN/@@download/ENCFF988HIN.bam mm10 released low read length, low read depth ENCFF426RVW bam alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUG, ENCFF018NEO 604463572 ENCODE Processing Pipeline 1a14f00f53182f669bbbc23a8137c635 https://www.encodeproject.org/files/ENCFF426RVW/@@download/ENCFF426RVW.bam mm10 released low read length, low read depth ENCFF876VMW bam alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUD, ENCFF018NEO 709927873 ENCODE Processing Pipeline d48eef293f49c9078296a24b282c3d80 https://www.encodeproject.org/files/ENCFF876VMW/@@download/ENCFF876VMW.bam mm10 released low read length, low read depth ENCFF604JRL bed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF426RVW, ENCFF627JLU 488331 ENCODE Processing Pipeline 01d821a20e5589a88d964084286003a3 https://www.encodeproject.org/files/ENCFF604JRL/@@download/ENCFF604JRL.bed.gz mm10 released low read length, low read depth ENCFF624LGG bigBed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF810QHQ 1587977 ENCODE Processing Pipeline 7d21cfd5ef0eedc0d5a69e9fdb8661ca https://www.encodeproject.org/files/ENCFF624LGG/@@download/ENCFF624LGG.bigBed mm10 released low read length, low read depth ENCFF810QHQ bed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF876VMW 476039 ENCODE Processing Pipeline a49b1f129861d402fa5bf8d6bf6d169b https://www.encodeproject.org/files/ENCFF810QHQ/@@download/ENCFF810QHQ.bed.gz mm10 released low read length, low read depth ENCFF603HAS bed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF426RVW, ENCFF627JLU, ENCFF876VMW 466047 ENCODE Processing Pipeline f2c7ccf98b4d91613fff38b01643cde8 https://www.encodeproject.org/files/ENCFF603HAS/@@download/ENCFF603HAS.bed.gz mm10 released low read length, low read depth ENCFF134RCN bigBed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF604JRL 1624130 ENCODE Processing Pipeline 3a59e5d8276041cfd921633e34f6d09d https://www.encodeproject.org/files/ENCFF134RCN/@@download/ENCFF134RCN.bigBed mm10 released low read length, low read depth ENCFF224GAK bigBed narrowPeak peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF603HAS 1552106 ENCODE Processing Pipeline 47e028ef82a0a4758ee02808f42a2257 https://www.encodeproject.org/files/ENCFF224GAK/@@download/ENCFF224GAK.bigBed mm10 released low read length, low read depth ENCFF690IBO bigWig signal p-value ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF876VMW 369132838 ENCODE Processing Pipeline 45eac7a09382fae23cc632b289fb518c https://www.encodeproject.org/files/ENCFF690IBO/@@download/ENCFF690IBO.bigWig mm10 released low read length, low read depth ENCFF886NQX bigWig signal p-value ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF426RVW, ENCFF627JLU 334978284 ENCODE Processing Pipeline 950b7f5cb8c2009dfe7c2978d2133bcd https://www.encodeproject.org/files/ENCFF886NQX/@@download/ENCFF886NQX.bigWig mm10 released low read length, low read depth ENCFF100AGY bigWig signal p-value ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF426RVW, ENCFF627JLU, ENCFF876VMW 492543658 ENCODE Processing Pipeline a5758daff2b7e64b18b6c0d6f0a9e6ff https://www.encodeproject.org/files/ENCFF100AGY/@@download/ENCFF100AGY.bigWig mm10 released low read length, low read depth ENCFF864BGC bigWig fold change over control ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026JTV, ENCFF627JLU, ENCFF876VMW 324880850 ENCODE Processing Pipeline dc7d6ad28b2eb5ee9108e4e941b32417 https://www.encodeproject.org/files/ENCFF864BGC/@@download/ENCFF864BGC.bigWig mm10 released low read length, low read depth ENCFF117VIY bigWig fold change over control ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF026JTV, ENCFF426RVW, ENCFF627JLU 287117985 ENCODE Processing Pipeline 6a36ef64b4313d15a1f77f07dd9aaa0f https://www.encodeproject.org/files/ENCFF117VIY/@@download/ENCFF117VIY.bigWig mm10 released low read length, low read depth ENCFF703BHN bigWig fold change over control ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JTV, ENCFF426RVW, ENCFF627JLU, ENCFF876VMW 498912908 ENCODE Processing Pipeline f31faf32a2f0b60d957ce6d2fa196eac https://www.encodeproject.org/files/ENCFF703BHN/@@download/ENCFF703BHN.bigWig mm10 released low read length, low read depth ENCFF445DQR bed narrowPeak replicated peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF603HAS, ENCFF604JRL, ENCFF810QHQ 563301 ENCODE Processing Pipeline a2b0b9cd3692bfe2d1c83a1f7cd81a2d https://www.encodeproject.org/files/ENCFF445DQR/@@download/ENCFF445DQR.bed.gz mm10 released low read length, low read depth ENCFF651ZNC bigBed narrowPeak replicated peaks ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF445DQR 1415107 ENCODE Processing Pipeline e465467cec31cf3da5ac2e4695d7b8fc https://www.encodeproject.org/files/ENCFF651ZNC/@@download/ENCFF651ZNC.bigBed mm10 released low read length, low read depth ENCFF002ALA fastq reads ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1111566921 Bing Ren, UCSD 3501792d154d02c0a06f20a2ba75325a SRA:SRR3652471 https://www.encodeproject.org/files/ENCFF002ALA/@@download/ENCFF002ALA.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQO/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, low read depth ENCFF002ALC fastq reads ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1242517433 Bing Ren, UCSD 818196a85726ecc7ad82d075dfbbaaca SRA:SRR3652470 https://www.encodeproject.org/files/ENCFF002ALC/@@download/ENCFF002ALC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQL/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF600CVS bam alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALC, ENCFF806TVZ 887676846 ENCODE Processing Pipeline f7ef0cf0081cc3ca9c23d765394d4e93 https://www.encodeproject.org/files/ENCFF600CVS/@@download/ENCFF600CVS.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF310IZZ bam alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALA, ENCFF806TVZ 731169476 ENCODE Processing Pipeline 332e5837647424f6a8bb606a72bf2ce7 https://www.encodeproject.org/files/ENCFF310IZZ/@@download/ENCFF310IZZ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF294YMW bed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310IZZ, ENCFF786XLC 734709 ENCODE Processing Pipeline 77d71a0b7d5441361981459f26290b9e https://www.encodeproject.org/files/ENCFF294YMW/@@download/ENCFF294YMW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF551WJD bed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF600CVS, ENCFF786XLC 845288 ENCODE Processing Pipeline 88d3834038cc347d59a5623f3e896d71 https://www.encodeproject.org/files/ENCFF551WJD/@@download/ENCFF551WJD.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF671XSX bed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF310IZZ, ENCFF600CVS, ENCFF786XLC 752422 ENCODE Processing Pipeline a280f6c06b1f5a7cec93589084ac27c3 https://www.encodeproject.org/files/ENCFF671XSX/@@download/ENCFF671XSX.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF818ARR bigBed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF551WJD 2612589 ENCODE Processing Pipeline d1ff260af1ad2fc17f0d946b579f232b https://www.encodeproject.org/files/ENCFF818ARR/@@download/ENCFF818ARR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF547CZL bigBed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF294YMW 2317774 ENCODE Processing Pipeline 878532c6ec773082bd25fa8b00805753 https://www.encodeproject.org/files/ENCFF547CZL/@@download/ENCFF547CZL.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF226ABT bigBed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF671XSX 2383217 ENCODE Processing Pipeline b719d710c562b25b4389e9a619f03dba https://www.encodeproject.org/files/ENCFF226ABT/@@download/ENCFF226ABT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF291ZLQ bigWig signal p-value ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310IZZ, ENCFF786XLC 365310782 ENCODE Processing Pipeline 934adaf2c1755364993a7ddebb18c4eb https://www.encodeproject.org/files/ENCFF291ZLQ/@@download/ENCFF291ZLQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF550VAB bigWig signal p-value ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF600CVS, ENCFF786XLC 377991763 ENCODE Processing Pipeline 39a779ee96302995c7082941fe010efe https://www.encodeproject.org/files/ENCFF550VAB/@@download/ENCFF550VAB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF232DUS bigWig signal p-value ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF310IZZ, ENCFF600CVS, ENCFF786XLC 622931787 ENCODE Processing Pipeline 031d6fc454c41160398d7a53a352c518 https://www.encodeproject.org/files/ENCFF232DUS/@@download/ENCFF232DUS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF972ASV bigWig fold change over control ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF310IZZ, ENCFF786XLC 297789983 ENCODE Processing Pipeline 07e2b3ac905778464ab6dc78ffed348b https://www.encodeproject.org/files/ENCFF972ASV/@@download/ENCFF972ASV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF871PVJ bigWig fold change over control ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF600CVS, ENCFF786XLC 407111819 ENCODE Processing Pipeline a3925883f0dfdef2c8c47fa8e5c96ab0 https://www.encodeproject.org/files/ENCFF871PVJ/@@download/ENCFF871PVJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF488YAY bigWig fold change over control ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF310IZZ, ENCFF600CVS, ENCFF786XLC 627498735 ENCODE Processing Pipeline f21a273480dccd87e4a7952b19659559 https://www.encodeproject.org/files/ENCFF488YAY/@@download/ENCFF488YAY.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF615PLV bigBed narrowPeak replicated peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF030SHU 1927068 ENCODE Processing Pipeline de7a9e61ddb370517b9b9e4a2da2d154 https://www.encodeproject.org/files/ENCFF615PLV/@@download/ENCFF615PLV.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF030SHU bed narrowPeak replicated peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF294YMW, ENCFF551WJD, ENCFF671XSX 794670 ENCODE Processing Pipeline 0978c8d220254a38ebea820db7d0db0f https://www.encodeproject.org/files/ENCFF030SHU/@@download/ENCFF030SHU.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF781KIQ bam unfiltered alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALA, ENCFF018NEO 1174095817 ENCODE Processing Pipeline fa0e5eb1507af58c717303b238f8ce7f https://www.encodeproject.org/files/ENCFF781KIQ/@@download/ENCFF781KIQ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF887QLU bam unfiltered alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALC, ENCFF018NEO 1289627271 ENCODE Processing Pipeline cbb422a0c5fd73da37e1cd334e5a2645 https://www.encodeproject.org/files/ENCFF887QLU/@@download/ENCFF887QLU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF593JQG bam alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALA, ENCFF018NEO 730975204 ENCODE Processing Pipeline cee1335055ab1408741bae9c6d09bb33 https://www.encodeproject.org/files/ENCFF593JQG/@@download/ENCFF593JQG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF814JIH bam alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALC, ENCFF018NEO 887523475 ENCODE Processing Pipeline bb3c870064cc5e7cc5d39d0c19d9b24a https://www.encodeproject.org/files/ENCFF814JIH/@@download/ENCFF814JIH.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF981CMF bed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF593JQG 716120 ENCODE Processing Pipeline 52141a50ac1ddbfc670d990f31b4d1ea https://www.encodeproject.org/files/ENCFF981CMF/@@download/ENCFF981CMF.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF804LIP bed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF424QZD, ENCFF767URV, ENCFF814JIH 854456 ENCODE Processing Pipeline f4965687a966b9155ebc7eeca0ff402e https://www.encodeproject.org/files/ENCFF804LIP/@@download/ENCFF804LIP.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF079KLH bed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF424QZD, ENCFF593JQG, ENCFF767URV, ENCFF814JIH 735616 ENCODE Processing Pipeline c2225a8b46ce0e97c3b96fe7b8781c85 https://www.encodeproject.org/files/ENCFF079KLH/@@download/ENCFF079KLH.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF467DCQ bigBed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF981CMF 2288681 ENCODE Processing Pipeline 8fbf49c94efd900c283f2016e1ee3adb https://www.encodeproject.org/files/ENCFF467DCQ/@@download/ENCFF467DCQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF806PZL bigBed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804LIP 2637806 ENCODE Processing Pipeline ca3ed71e278f1c10258a0f6214fe800e https://www.encodeproject.org/files/ENCFF806PZL/@@download/ENCFF806PZL.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF713BRB bigBed narrowPeak peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF079KLH 2327945 ENCODE Processing Pipeline b5d1f638094f7704b94eaeec4887726b https://www.encodeproject.org/files/ENCFF713BRB/@@download/ENCFF713BRB.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF105JSF bigWig signal p-value ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF593JQG 348449354 ENCODE Processing Pipeline 0cf3090839ee85e99e1044497460567b https://www.encodeproject.org/files/ENCFF105JSF/@@download/ENCFF105JSF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF816NDA bigWig signal p-value ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF424QZD, ENCFF767URV, ENCFF814JIH 378636752 ENCODE Processing Pipeline fb5bf3ef5215378fb6fe9c51ff057134 https://www.encodeproject.org/files/ENCFF816NDA/@@download/ENCFF816NDA.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF105LUX bigWig signal p-value ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF424QZD, ENCFF593JQG, ENCFF767URV, ENCFF814JIH 611583978 ENCODE Processing Pipeline 5384d4e3e06230dfe8ca2f692d0df04d https://www.encodeproject.org/files/ENCFF105LUX/@@download/ENCFF105LUX.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF007YWT bigWig fold change over control ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF424QZD, ENCFF593JQG 304620175 ENCODE Processing Pipeline 88de73a46faf367bf09b291a6de76764 https://www.encodeproject.org/files/ENCFF007YWT/@@download/ENCFF007YWT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF135TJV bigWig fold change over control ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF424QZD, ENCFF767URV, ENCFF814JIH 411349438 ENCODE Processing Pipeline 604bc5e41f440ff0b3164b19e7f6ba36 https://www.encodeproject.org/files/ENCFF135TJV/@@download/ENCFF135TJV.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF161KBG bigWig fold change over control ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF424QZD, ENCFF593JQG, ENCFF767URV, ENCFF814JIH 623125205 ENCODE Processing Pipeline 64704484b62e0d4a9cf49035cc6c4a0f https://www.encodeproject.org/files/ENCFF161KBG/@@download/ENCFF161KBG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF089PVO bed narrowPeak replicated peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF079KLH, ENCFF804LIP, ENCFF981CMF 806627 ENCODE Processing Pipeline 77de184c1d6e43e5ece938ced6b5acad https://www.encodeproject.org/files/ENCFF089PVO/@@download/ENCFF089PVO.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF226JCX bigBed narrowPeak replicated peaks ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF089PVO 1951340 ENCODE Processing Pipeline 51c0b95527bc8e3526fc28fbc7f5541a https://www.encodeproject.org/files/ENCFF226JCX/@@download/ENCFF226JCX.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF001LJA bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LJN 644482909 Bing Ren, UCSD 0360897e7aa58b8ab60b74289b571b36 https://www.encodeproject.org/files/ENCFF001LJA/@@download/ENCFF001LJA.bam mm9 released low read length insufficient read depth ENCFF001LJB bigBed broadPeak peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAD 350445 Bing Ren, UCSD cc68a958dc3fe8d63ac8112e5bb45466 https://www.encodeproject.org/files/ENCFF001LJB/@@download/ENCFF001LJB.bigBed mm9 released low read length insufficient read depth ENCFF001LJC bigWig signal ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJA, ENCFF001LJD 57423865 Bing Ren, UCSD 12d5dd509903e980b0610c5b813dc3cc https://www.encodeproject.org/files/ENCFF001LJC/@@download/ENCFF001LJC.bigWig mm9 released low read length insufficient read depth ENCFF001LJD bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LJO 685885202 Bing Ren, UCSD e2ebd68f304d46428b4e2a46bc42271d https://www.encodeproject.org/files/ENCFF001LJD/@@download/ENCFF001LJD.bam mm9 released low read length insufficient read depth ENCFF001LJN fastq reads ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 697044760 Bing Ren, UCSD 842e5e09a0c545dc42cbe70ef42a8297 https://www.encodeproject.org/files/ENCFF001LJN/@@download/ENCFF001LJN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length insufficient read depth ENCFF001LJO fastq reads ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 814014837 Bing Ren, UCSD 594481beb83ed1b95582f72a3c455764 https://www.encodeproject.org/files/ENCFF001LJO/@@download/ENCFF001LJO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length insufficient read depth ENCFF001YAD bed broadPeak peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LJA, ENCFF001LJD 228977 Bing Ren, UCSD ffb0119d85fbec52de191c912f304e2a https://www.encodeproject.org/files/ENCFF001YAD/@@download/ENCFF001YAD.bed.gz mm9 released low read length insufficient read depth ENCFF372LYI bam unfiltered alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJN, ENCFF018NEO 769003719 ENCODE Processing Pipeline bfd64e071c7f4c425bf74d4b7f0766e8 https://www.encodeproject.org/files/ENCFF372LYI/@@download/ENCFF372LYI.bam mm10 released low read length insufficient read depth ENCFF216DXX bam unfiltered alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJO, ENCFF018NEO 900057159 ENCODE Processing Pipeline ba69dac30e5ce18cd6a71825b0ee13cd https://www.encodeproject.org/files/ENCFF216DXX/@@download/ENCFF216DXX.bam mm10 released low read length insufficient read depth ENCFF676OVP bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJO, ENCFF018NEO 483241675 ENCODE Processing Pipeline 5d4b05a603dfa20e0b7fc2c80d0c4600 https://www.encodeproject.org/files/ENCFF676OVP/@@download/ENCFF676OVP.bam mm10 released low read length insufficient read depth ENCFF358NVC bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJN, ENCFF018NEO 440923333 ENCODE Processing Pipeline 455a3990b965d834478436cb375c7125 https://www.encodeproject.org/files/ENCFF358NVC/@@download/ENCFF358NVC.bam mm10 released low read length insufficient read depth ENCFF235AQO bigWig signal p-value ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF358NVC, ENCFF439WCI, ENCFF683TKC 321484513 ENCODE Processing Pipeline cb1523855879756dd3f692d1ab810296 https://www.encodeproject.org/files/ENCFF235AQO/@@download/ENCFF235AQO.bigWig mm10 released low read length insufficient read depth ENCFF989VZZ bed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 4627878 ENCODE Processing Pipeline d3b34d2bad4ddcd6d9de4b56301714e8 https://www.encodeproject.org/files/ENCFF989VZZ/@@download/ENCFF989VZZ.bed.gz mm10 released low read length insufficient read depth ENCFF612UFO bigWig signal p-value ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF358NVC, ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 388543244 ENCODE Processing Pipeline 00b003d547e6ef631b378077b9b0dc58 https://www.encodeproject.org/files/ENCFF612UFO/@@download/ENCFF612UFO.bigWig mm10 released low read length insufficient read depth ENCFF607KLT bigWig fold change over control ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 262600275 ENCODE Processing Pipeline ce875704eda8ec01464766729a6e249c https://www.encodeproject.org/files/ENCFF607KLT/@@download/ENCFF607KLT.bigWig mm10 released low read length insufficient read depth ENCFF330QQM bigWig signal p-value ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 409470297 ENCODE Processing Pipeline 68a48457fe89461ad1f39d7d6e209bc0 https://www.encodeproject.org/files/ENCFF330QQM/@@download/ENCFF330QQM.bigWig mm10 released low read length insufficient read depth ENCFF467HHM bigWig fold change over control ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF358NVC, ENCFF439WCI, ENCFF683TKC 233422228 ENCODE Processing Pipeline 8d8ccfb1185cdea5d8335e5191241556 https://www.encodeproject.org/files/ENCFF467HHM/@@download/ENCFF467HHM.bigWig mm10 released low read length insufficient read depth ENCFF320LZI bigWig fold change over control ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF358NVC, ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 406824070 ENCODE Processing Pipeline 9ca7289b696a0cb4ecba46016199231b https://www.encodeproject.org/files/ENCFF320LZI/@@download/ENCFF320LZI.bigWig mm10 released low read length insufficient read depth ENCFF928UGN bed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF358NVC, ENCFF439WCI, ENCFF676OVP, ENCFF683TKC 4708405 ENCODE Processing Pipeline d70957684064ca5d1248a8ece5a7134e https://www.encodeproject.org/files/ENCFF928UGN/@@download/ENCFF928UGN.bed.gz mm10 released low read length insufficient read depth ENCFF397PQB bed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF358NVC, ENCFF439WCI, ENCFF683TKC 4848677 ENCODE Processing Pipeline 33758a00a40acc59df3f1c31a4948db8 https://www.encodeproject.org/files/ENCFF397PQB/@@download/ENCFF397PQB.bed.gz mm10 released low read length insufficient read depth ENCFF434CET bigBed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF397PQB 9562254 ENCODE Processing Pipeline 675cba079b5c6fe4266e78bcffa6e67f https://www.encodeproject.org/files/ENCFF434CET/@@download/ENCFF434CET.bigBed mm10 released low read length insufficient read depth ENCFF469MWN bigBed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF989VZZ 9431201 ENCODE Processing Pipeline bf480963919a05093333abc22632c6f8 https://www.encodeproject.org/files/ENCFF469MWN/@@download/ENCFF469MWN.bigBed mm10 released low read length insufficient read depth ENCFF350GCX bed narrowPeak conservative idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF397PQB, ENCFF547MET, ENCFF928UGN, ENCFF989VZZ 418402 ENCODE Processing Pipeline eb1473a07281d8bb850def58f164f561 https://www.encodeproject.org/files/ENCFF350GCX/@@download/ENCFF350GCX.bed.gz mm10 released low read length insufficient read depth ENCFF737PRI bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF350GCX 850955 ENCODE Processing Pipeline 1b837f0dfa750ddf6fb8e1865831fa30 https://www.encodeproject.org/files/ENCFF737PRI/@@download/ENCFF737PRI.bigBed mm10 released low read length insufficient read depth ENCFF179FJG bed narrowPeak optimal idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF397PQB, ENCFF547MET, ENCFF928UGN, ENCFF989VZZ 480846 ENCODE Processing Pipeline ae8242dd330ecff2c0a4f26afb24ccd6 https://www.encodeproject.org/files/ENCFF179FJG/@@download/ENCFF179FJG.bed.gz mm10 released low read length insufficient read depth ENCFF451YAQ bigBed narrowPeak peaks and background as input for IDR ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF928UGN 9876473 ENCODE Processing Pipeline 066218edac8d6e7f1299ca136b224600 https://www.encodeproject.org/files/ENCFF451YAQ/@@download/ENCFF451YAQ.bigBed mm10 released low read length insufficient read depth ENCFF260GSL bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF179FJG 949540 ENCODE Processing Pipeline bb18f048b6a9afeec272e606ec90fd0b https://www.encodeproject.org/files/ENCFF260GSL/@@download/ENCFF260GSL.bigBed mm10 released low read length insufficient read depth ENCFF001OAF bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001OBC 240801382 Michael Snyder, Stanford d1250be8dbbbabb00a9fc98270ea13f5 https://www.encodeproject.org/files/ENCFF001OAF/@@download/ENCFF001OAF.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OAH bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001OBJ 473876402 Michael Snyder, Stanford 7eaa91ab29638b13f137497d16b7de7f https://www.encodeproject.org/files/ENCFF001OAH/@@download/ENCFF001OAH.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OAI bigBed narrowPeak peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YKI 132367 Michael Snyder, Stanford 474a443e52a17367ca4bd151540985fd https://www.encodeproject.org/files/ENCFF001OAI/@@download/ENCFF001OAI.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OAJ bigWig signal ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001OAF, ENCFF001OAH 292469937 Michael Snyder, Stanford 37a2a0128ae81110d3aa2f76bdee9ff4 https://www.encodeproject.org/files/ENCFF001OAJ/@@download/ENCFF001OAJ.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OBC fastq reads ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 480656167 Michael Snyder, Stanford 9f16d28a89e0146d0fe8c5fe4072e236 https://www.encodeproject.org/files/ENCFF001OBC/@@download/ENCFF001OBC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF001OBJ fastq reads ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 1233533866 Michael Snyder, Stanford e5e71ccd663350b9f202c8743bb0c0d9 https://www.encodeproject.org/files/ENCFF001OBJ/@@download/ENCFF001OBJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF001YKI bed narrowPeak peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001OAF, ENCFF001OAH 33589 Michael Snyder, Stanford 8f3c6f657450b75bd8fc4f9644724290 https://www.encodeproject.org/files/ENCFF001YKI/@@download/ENCFF001YKI.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF382KAF bam unfiltered alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001OBJ, ENCFF018NEO 1474380540 ENCODE Processing Pipeline f75f3c33a993bd634280e43100d10897 https://www.encodeproject.org/files/ENCFF382KAF/@@download/ENCFF382KAF.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF566YDC bam unfiltered alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001OBC, ENCFF018NEO 610057335 ENCODE Processing Pipeline 42cef26c54eebfbfaae84a3d6246e9b4 https://www.encodeproject.org/files/ENCFF566YDC/@@download/ENCFF566YDC.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF139PUK bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001OBJ, ENCFF018NEO 914833363 ENCODE Processing Pipeline ff8e5444cd996cb93d449abe19ff9c40 https://www.encodeproject.org/files/ENCFF139PUK/@@download/ENCFF139PUK.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF824KNT bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001OBC, ENCFF018NEO 367747463 ENCODE Processing Pipeline de52d18700cf4f5ab0232f54128a7151 https://www.encodeproject.org/files/ENCFF824KNT/@@download/ENCFF824KNT.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF863PIW bigWig signal p-value ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF017EBX, ENCFF824KNT 280091884 ENCODE Processing Pipeline 0d2a3287fa1afd95cd6cc6add2bf695f https://www.encodeproject.org/files/ENCFF863PIW/@@download/ENCFF863PIW.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF215HZN bigWig signal p-value ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF017EBX, ENCFF139PUK 375123026 ENCODE Processing Pipeline 32ef77ad38a2b1396450ffc91464fa62 https://www.encodeproject.org/files/ENCFF215HZN/@@download/ENCFF215HZN.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF477DYZ bigWig signal p-value ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF017EBX, ENCFF139PUK, ENCFF824KNT 410985619 ENCODE Processing Pipeline 9f07c9a45de050f6f31296a98fce0eef https://www.encodeproject.org/files/ENCFF477DYZ/@@download/ENCFF477DYZ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF776AOZ bigWig fold change over control ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF017EBX, ENCFF824KNT 198443660 ENCODE Processing Pipeline 90eb890c8663c5a44cc913b6069c8091 https://www.encodeproject.org/files/ENCFF776AOZ/@@download/ENCFF776AOZ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF855ASF bigWig fold change over control ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF017EBX, ENCFF139PUK 376497841 ENCODE Processing Pipeline 2114404bf7c38c3ab02961feb5948e27 https://www.encodeproject.org/files/ENCFF855ASF/@@download/ENCFF855ASF.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF465SVV bigWig fold change over control ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF017EBX, ENCFF139PUK, ENCFF824KNT 486673185 ENCODE Processing Pipeline c68f86eb6ecadac8a5359d902299e8e6 https://www.encodeproject.org/files/ENCFF465SVV/@@download/ENCFF465SVV.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF424HUK bed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF017EBX, ENCFF824KNT 3489907 ENCODE Processing Pipeline 987de941272196c8a1894b284368c852 https://www.encodeproject.org/files/ENCFF424HUK/@@download/ENCFF424HUK.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF087TTA bed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF017EBX, ENCFF139PUK 4668570 ENCODE Processing Pipeline 4096ba1fc1eced2865aa1e806e16b736 https://www.encodeproject.org/files/ENCFF087TTA/@@download/ENCFF087TTA.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF033VUP bed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF017EBX, ENCFF139PUK, ENCFF824KNT 4824332 ENCODE Processing Pipeline a2d7a9563334ff730540a3f017d213f4 https://www.encodeproject.org/files/ENCFF033VUP/@@download/ENCFF033VUP.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF174GIV bigBed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF424HUK 8886209 ENCODE Processing Pipeline 7475abc344bef6aeb174eef74615cb72 https://www.encodeproject.org/files/ENCFF174GIV/@@download/ENCFF174GIV.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF344SDJ bigBed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF087TTA 10886448 ENCODE Processing Pipeline c0f58c0aa0bb68318c9693be598adb5a https://www.encodeproject.org/files/ENCFF344SDJ/@@download/ENCFF344SDJ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF064JVA bigBed narrowPeak peaks and background as input for IDR ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF033VUP 10932046 ENCODE Processing Pipeline e40db0c0960405fca3c0a58ba45a3242 https://www.encodeproject.org/files/ENCFF064JVA/@@download/ENCFF064JVA.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF990IYE bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF517BYF 92501 ENCODE Processing Pipeline 78744ee01268c55027f366f098b57a58 https://www.encodeproject.org/files/ENCFF990IYE/@@download/ENCFF990IYE.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF517BYF bed narrowPeak conservative idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF033VUP, ENCFF087TTA, ENCFF424HUK, ENCFF547MET 22469 ENCODE Processing Pipeline eacffb11b4a75fa905d861969d42b2d7 https://www.encodeproject.org/files/ENCFF517BYF/@@download/ENCFF517BYF.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF679FKB bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF968IBZ 98238 ENCODE Processing Pipeline c2e197a5ec682e05a017c4370bad4972 https://www.encodeproject.org/files/ENCFF679FKB/@@download/ENCFF679FKB.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF968IBZ bed narrowPeak optimal idr thresholded peaks ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF033VUP, ENCFF087TTA, ENCFF424HUK, ENCFF547MET 25948 ENCODE Processing Pipeline 6742802fe64e87a234954ab8df683d42 https://www.encodeproject.org/files/ENCFF968IBZ/@@download/ENCFF968IBZ.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF074QNE bam alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF570AMF, ENCFF806TVZ, ENCFF836UWU 2996711474 ENCODE Processing Pipeline 74f34b2646e3c550e6877907bf653e24 https://www.encodeproject.org/files/ENCFF074QNE/@@download/ENCFF074QNE.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF519ZML bam alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF488AGX, ENCFF660RWL, ENCFF806TVZ 2708867725 ENCODE Processing Pipeline 5c2d279cfb4d68852708e6c4d7221526 https://www.encodeproject.org/files/ENCFF519ZML/@@download/ENCFF519ZML.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF836UWU fastq reads ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2618424986 Bing Ren, UCSD a7c03f3bb64c151a95e7959f6c701af9 SRA:SRR3651348 https://www.encodeproject.org/files/ENCFF836UWU/@@download/ENCFF836UWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF333CMN/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF660RWL fastq reads ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2799806969 Bing Ren, UCSD 70eab26474879797119a4752e6460f4e SRA:SRR3651346 https://www.encodeproject.org/files/ENCFF660RWL/@@download/ENCFF660RWL.fastq.gz Illumina HiSeq 2000 /files/ENCFF554GAJ/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF488AGX fastq reads ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 1042272616 Bing Ren, UCSD 86a3eb95205cff402bde2b79685c52db SRA:SRR3651347 https://www.encodeproject.org/files/ENCFF488AGX/@@download/ENCFF488AGX.fastq.gz Illumina HiSeq 2500 /files/ENCFF554GAJ/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF570AMF fastq reads ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 1669168175 Bing Ren, UCSD 123db336b59eb97f0751db39591d9bb7 SRA:SRR3651349 https://www.encodeproject.org/files/ENCFF570AMF/@@download/ENCFF570AMF.fastq.gz Illumina HiSeq 2500 /files/ENCFF333CMN/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF795YPK bed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF519ZML, ENCFF541RVC, ENCFF674GBO 2894752 ENCODE Processing Pipeline af2085a3ebc97bd11161dc0af42dea64 https://www.encodeproject.org/files/ENCFF795YPK/@@download/ENCFF795YPK.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF378MQW bed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF074QNE, ENCFF519ZML, ENCFF541RVC, ENCFF674GBO 2661498 ENCODE Processing Pipeline dfbc798cbbf13e909f5ad2e30e77cb24 https://www.encodeproject.org/files/ENCFF378MQW/@@download/ENCFF378MQW.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF567NXA bed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF074QNE, ENCFF541RVC, ENCFF674GBO 2929386 ENCODE Processing Pipeline 0d1df41047fe773720e1fa9e60dd42c2 https://www.encodeproject.org/files/ENCFF567NXA/@@download/ENCFF567NXA.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF835NFR bigBed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF795YPK 6443002 ENCODE Processing Pipeline d9c58bd6ed1da51078b7113e7d7d2126 https://www.encodeproject.org/files/ENCFF835NFR/@@download/ENCFF835NFR.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF219QIO bigBed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF378MQW 5872352 ENCODE Processing Pipeline a847c6d9792cc08a916963b299f5f0db https://www.encodeproject.org/files/ENCFF219QIO/@@download/ENCFF219QIO.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF048YTY bigBed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF567NXA 6563878 ENCODE Processing Pipeline 9c43fff80effe9848364adcc629479bd https://www.encodeproject.org/files/ENCFF048YTY/@@download/ENCFF048YTY.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF288BES bigWig signal p-value ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF074QNE, ENCFF541RVC, ENCFF674GBO 1022254794 ENCODE Processing Pipeline 6996b04ca3bfe99f823e6c7c2551cb80 https://www.encodeproject.org/files/ENCFF288BES/@@download/ENCFF288BES.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF700CIS bigWig signal p-value ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF519ZML, ENCFF541RVC, ENCFF674GBO 774993964 ENCODE Processing Pipeline cf55bfd77e656dbdda3a40b4f97e1577 https://www.encodeproject.org/files/ENCFF700CIS/@@download/ENCFF700CIS.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF275NRU bigWig signal p-value ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF074QNE, ENCFF519ZML, ENCFF541RVC, ENCFF674GBO 1190232786 ENCODE Processing Pipeline ed91a81ba3e110e0591b51649cef5d53 https://www.encodeproject.org/files/ENCFF275NRU/@@download/ENCFF275NRU.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF017TTA bigWig fold change over control ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF074QNE, ENCFF541RVC, ENCFF674GBO 1082520699 ENCODE Processing Pipeline 03eef3050289d4995cb88b74040b5d4e https://www.encodeproject.org/files/ENCFF017TTA/@@download/ENCFF017TTA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF710YLH bigWig fold change over control ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF519ZML, ENCFF541RVC, ENCFF674GBO 1025321333 ENCODE Processing Pipeline d04a9505f31ad1115116b1c8adb1552b https://www.encodeproject.org/files/ENCFF710YLH/@@download/ENCFF710YLH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF493LRX bigWig fold change over control ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF074QNE, ENCFF519ZML, ENCFF541RVC, ENCFF674GBO 1570080747 ENCODE Processing Pipeline 75a1282ea5a090dd831fc844be4177cd https://www.encodeproject.org/files/ENCFF493LRX/@@download/ENCFF493LRX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF838NCW bed narrowPeak replicated peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF378MQW, ENCFF567NXA, ENCFF795YPK 2795129 ENCODE Processing Pipeline e3c1cc3e9fbd6cdbe6e8a12b387212ef https://www.encodeproject.org/files/ENCFF838NCW/@@download/ENCFF838NCW.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF516MRZ bigBed narrowPeak replicated peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF838NCW 4885798 ENCODE Processing Pipeline 78e02a8f66fe2e06aa27fb8dd6d731f3 https://www.encodeproject.org/files/ENCFF516MRZ/@@download/ENCFF516MRZ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF530MIP bam unfiltered alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF570AMF, ENCFF836UWU 5018384989 ENCODE Processing Pipeline 221c6ef6c40a273ff68d77138b671509 https://www.encodeproject.org/files/ENCFF530MIP/@@download/ENCFF530MIP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF914UVP bam unfiltered alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF488AGX, ENCFF660RWL 4505389106 ENCODE Processing Pipeline ebf6c9cddc784238a9b86b684b403b53 https://www.encodeproject.org/files/ENCFF914UVP/@@download/ENCFF914UVP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF600XLT bam alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF488AGX, ENCFF660RWL 2708176982 ENCODE Processing Pipeline bb087a8b8dccb17beb902e7564171c1c https://www.encodeproject.org/files/ENCFF600XLT/@@download/ENCFF600XLT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF575ZDW bam alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF570AMF, ENCFF836UWU 2995966776 ENCODE Processing Pipeline 1ce0eacc9d9de4b1c65e029f5f29b576 https://www.encodeproject.org/files/ENCFF575ZDW/@@download/ENCFF575ZDW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF921NQE bed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF575ZDW, ENCFF962XXR 2965667 ENCODE Processing Pipeline ea33433fc8db536ba453c23133b594e9 https://www.encodeproject.org/files/ENCFF921NQE/@@download/ENCFF921NQE.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF950EVG bed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF600XLT, ENCFF962XXR 2579707 ENCODE Processing Pipeline 5677eaae8fa4eade89edb6f390cc6116 https://www.encodeproject.org/files/ENCFF950EVG/@@download/ENCFF950EVG.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF013RCB bed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF575ZDW, ENCFF600XLT, ENCFF962XXR 3029066 ENCODE Processing Pipeline 38e4765c7c699a85a6b09e18afab1752 https://www.encodeproject.org/files/ENCFF013RCB/@@download/ENCFF013RCB.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF586FGU bigBed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF921NQE 6663638 ENCODE Processing Pipeline ebfdc653ba4eed069ef47ba3cada971e https://www.encodeproject.org/files/ENCFF586FGU/@@download/ENCFF586FGU.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF380LEO bigBed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF950EVG 5797259 ENCODE Processing Pipeline adaa4eae4f1e4fe0b3bd49fab332fe69 https://www.encodeproject.org/files/ENCFF380LEO/@@download/ENCFF380LEO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF395WGO bigBed narrowPeak peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF013RCB 6715918 ENCODE Processing Pipeline c76026ac9f29b0ea2fb28f44bd226699 https://www.encodeproject.org/files/ENCFF395WGO/@@download/ENCFF395WGO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF235IRA bigWig signal p-value ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF575ZDW, ENCFF962XXR 914492353 ENCODE Processing Pipeline d546b4540690bd050146044ba4fd2293 https://www.encodeproject.org/files/ENCFF235IRA/@@download/ENCFF235IRA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF354QUD bigWig signal p-value ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF600XLT, ENCFF962XXR 946578324 ENCODE Processing Pipeline cef57303cdda453447dd2fc7a827e5e5 https://www.encodeproject.org/files/ENCFF354QUD/@@download/ENCFF354QUD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF341NEL bigWig signal p-value ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF575ZDW, ENCFF600XLT, ENCFF962XXR 1628625832 ENCODE Processing Pipeline c242d8011c81e59d8e567c62746d0e5a https://www.encodeproject.org/files/ENCFF341NEL/@@download/ENCFF341NEL.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF120WHG bigWig fold change over control ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF561HVM, ENCFF575ZDW, ENCFF962XXR 1235983590 ENCODE Processing Pipeline 06ea529f9b390b598a66ebbe6b7d7a07 https://www.encodeproject.org/files/ENCFF120WHG/@@download/ENCFF120WHG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF992FTL bigWig fold change over control ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF600XLT, ENCFF962XXR 945542419 ENCODE Processing Pipeline 9d21903f92a1e267b17b80cb1b2fbbd5 https://www.encodeproject.org/files/ENCFF992FTL/@@download/ENCFF992FTL.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF652HPR bigWig fold change over control ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF561HVM, ENCFF575ZDW, ENCFF600XLT, ENCFF962XXR 1684570379 ENCODE Processing Pipeline 4d16596504827fd927d8b9125c67c505 https://www.encodeproject.org/files/ENCFF652HPR/@@download/ENCFF652HPR.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF005PXT bed narrowPeak replicated peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF013RCB, ENCFF921NQE, ENCFF950EVG 2678436 ENCODE Processing Pipeline 6017690992145762bc1360cbeaf44c3c https://www.encodeproject.org/files/ENCFF005PXT/@@download/ENCFF005PXT.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF486OCA bigBed narrowPeak replicated peaks ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF005PXT 4597121 ENCODE Processing Pipeline b88f9fc1a24aae74f7e2cc2ceef1f0cd https://www.encodeproject.org/files/ENCFF486OCA/@@download/ENCFF486OCA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001NVD bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NVG 446121362 Michael Snyder, Stanford ef0f2855cabb4134046abc43155c67cb https://www.encodeproject.org/files/ENCFF001NVD/@@download/ENCFF001NVD.bam mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NVF bigBed narrowPeak peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJR 516360 Michael Snyder, Stanford 5390cf67e8f30bbbbaf135b6a55f3410 https://www.encodeproject.org/files/ENCFF001NVF/@@download/ENCFF001NVF.bigBed mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NVG fastq reads ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 931761169 Michael Snyder, Stanford b0c29d913d0edb92ae228b7efeeaafb7 https://www.encodeproject.org/files/ENCFF001NVG/@@download/ENCFF001NVG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NVI fastq reads ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1226745149 Michael Snyder, Stanford d75ce2802a781b3a30a1d7ec7515c88d https://www.encodeproject.org/files/ENCFF001NVI/@@download/ENCFF001NVI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NVK bigWig signal ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVD, ENCFF001NVL 357521366 Michael Snyder, Stanford 72195666654cd14db871cc9916a9e5ad https://www.encodeproject.org/files/ENCFF001NVK/@@download/ENCFF001NVK.bigWig mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NVL bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NVI 538324827 Michael Snyder, Stanford 3726ace3bf98c2ad89f94474377eeac5 https://www.encodeproject.org/files/ENCFF001NVL/@@download/ENCFF001NVL.bam mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJR bed narrowPeak peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVD, ENCFF001NVL 237157 Michael Snyder, Stanford fbdd027866ab243773f528c116541fd5 https://www.encodeproject.org/files/ENCFF001YJR/@@download/ENCFF001YJR.bed.gz mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF360HMS bam unfiltered alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVI, ENCFF018NEO 1316865239 ENCODE Processing Pipeline db04732259a9bd96ae7f1dcb3bec910d https://www.encodeproject.org/files/ENCFF360HMS/@@download/ENCFF360HMS.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF754YCA bam unfiltered alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVG, ENCFF018NEO 1033658445 ENCODE Processing Pipeline 8bb0b81a3d030adf101ac8ce4783154a https://www.encodeproject.org/files/ENCFF754YCA/@@download/ENCFF754YCA.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF918MLI bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVI, ENCFF018NEO 774266929 ENCODE Processing Pipeline 663d15eaf247b3aa9c5f666dd0aa2ca3 https://www.encodeproject.org/files/ENCFF918MLI/@@download/ENCFF918MLI.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF713QES bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVG, ENCFF018NEO 629207786 ENCODE Processing Pipeline abc63885441e89d6fba8d29a843d3a6f https://www.encodeproject.org/files/ENCFF713QES/@@download/ENCFF713QES.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF323OXU bigWig fold change over control ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF713QES 285245486 ENCODE Processing Pipeline 5d881e3401ddcc5153a6636ac1ee75f4 https://www.encodeproject.org/files/ENCFF323OXU/@@download/ENCFF323OXU.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF527FDF bigBed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF512TDJ 10690710 ENCODE Processing Pipeline d34c024e80b1b40a47e5c2c403a1a4fa https://www.encodeproject.org/files/ENCFF527FDF/@@download/ENCFF527FDF.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF031DDU bed narrowPeak optimal idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF506MCL, ENCFF512TDJ, ENCFF547MET, ENCFF579OLU 165979 ENCODE Processing Pipeline 3adb68a32b8636e7e784f238306daffd https://www.encodeproject.org/files/ENCFF031DDU/@@download/ENCFF031DDU.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF811AKX bigBed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF579OLU 1729192 ENCODE Processing Pipeline c6069fae4abf8399b9764dcee79d5eb3 https://www.encodeproject.org/files/ENCFF811AKX/@@download/ENCFF811AKX.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF128HOB bigBed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF506MCL 12985997 ENCODE Processing Pipeline 4e7d83bb8077f930b24c352b4d0daa11 https://www.encodeproject.org/files/ENCFF128HOB/@@download/ENCFF128HOB.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF525IWQ bigWig signal p-value ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF918MLI 312106239 ENCODE Processing Pipeline 1983bc81ebb5dd625161ae051e4bbe0b https://www.encodeproject.org/files/ENCFF525IWQ/@@download/ENCFF525IWQ.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF506MCL bed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF713QES, ENCFF918MLI 5489004 ENCODE Processing Pipeline 326f9675c373f1e2999c8fabafaba5a9 https://www.encodeproject.org/files/ENCFF506MCL/@@download/ENCFF506MCL.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF032YUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF031DDU 345148 ENCODE Processing Pipeline f51cc8e2857462eeb94bdea7598f243f https://www.encodeproject.org/files/ENCFF032YUJ/@@download/ENCFF032YUJ.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF685JDR bigWig signal p-value ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF713QES, ENCFF918MLI 310047718 ENCODE Processing Pipeline 2ae319c4ab3b1eb6a53bafcaac4b68d3 https://www.encodeproject.org/files/ENCFF685JDR/@@download/ENCFF685JDR.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF516ABO bigWig fold change over control ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF713QES, ENCFF918MLI 528164654 ENCODE Processing Pipeline 6018bef48c349b1ce2cc705fb90de469 https://www.encodeproject.org/files/ENCFF516ABO/@@download/ENCFF516ABO.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF512TDJ bed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF713QES 4850684 ENCODE Processing Pipeline 22aab2a7a2572e89f98c1d013eabd1df https://www.encodeproject.org/files/ENCFF512TDJ/@@download/ENCFF512TDJ.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF579OLU bed narrowPeak peaks and background as input for IDR ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF918MLI 863101 ENCODE Processing Pipeline 036396551a1579056098073ca712d75f https://www.encodeproject.org/files/ENCFF579OLU/@@download/ENCFF579OLU.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF289AOM bed narrowPeak conservative idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF506MCL, ENCFF512TDJ, ENCFF547MET, ENCFF579OLU 105485 ENCODE Processing Pipeline 687902728becc9d7760e862a5edd6f39 https://www.encodeproject.org/files/ENCFF289AOM/@@download/ENCFF289AOM.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF080RWB bigWig fold change over control ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF918MLI 338680060 ENCODE Processing Pipeline 4f084013beb5ea171c66f1592eeb858c https://www.encodeproject.org/files/ENCFF080RWB/@@download/ENCFF080RWB.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF373QZP bigWig signal p-value ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF713QES 280058396 ENCODE Processing Pipeline e6ede33b0584c432f2b5d25baf6db348 https://www.encodeproject.org/files/ENCFF373QZP/@@download/ENCFF373QZP.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF197NKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF289AOM 254223 ENCODE Processing Pipeline c52e7226f8a593cd0bd84826cffc4e8a https://www.encodeproject.org/files/ENCFF197NKJ/@@download/ENCFF197NKJ.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF002ALX fastq reads ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1194460976 Bing Ren, UCSD f51be9cb9964a539ee870990d4a66775 SRA:SRR3652469 https://www.encodeproject.org/files/ENCFF002ALX/@@download/ENCFF002ALX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARB/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF179SPI bam alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALX, ENCFF806TVZ 594280949 ENCODE Processing Pipeline 2e2a7dbf4f2cf308440ea24f05f1f121 https://www.encodeproject.org/files/ENCFF179SPI/@@download/ENCFF179SPI.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF216KEB fastq reads ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 411946778 Bing Ren, UCSD d914a49a54721eba0e24071ce4a53786 SRA:SRR3652467 https://www.encodeproject.org/files/ENCFF216KEB/@@download/ENCFF216KEB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF987JVV fastq reads ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 1066467989 Bing Ren, UCSD fa6d05bc3b3dee82c23e9886d1e62899 SRA:SRR3652468 https://www.encodeproject.org/files/ENCFF987JVV/@@download/ENCFF987JVV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF525ERJ bam alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF216KEB, ENCFF806TVZ, ENCFF987JVV 934671344 ENCODE Processing Pipeline 17d68331206490c3d7af59781fff9ba0 https://www.encodeproject.org/files/ENCFF525ERJ/@@download/ENCFF525ERJ.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF383UJI bigWig signal p-value ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF525ERJ, ENCFF819FNM 332229800 ENCODE Processing Pipeline abf2e5ff36751cb732d800d75cc279fc https://www.encodeproject.org/files/ENCFF383UJI/@@download/ENCFF383UJI.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF561KHL bigBed narrowPeak replicated peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF408UEE 2543342 ENCODE Processing Pipeline 05e69a8cb453414f7c7f87b44fac27cc https://www.encodeproject.org/files/ENCFF561KHL/@@download/ENCFF561KHL.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF002OOQ bed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF525ERJ, ENCFF819FNM 999628 ENCODE Processing Pipeline c0fff1c84ab8d7884f5fff68795b205b https://www.encodeproject.org/files/ENCFF002OOQ/@@download/ENCFF002OOQ.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF408UEE bed narrowPeak replicated peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF002OOQ, ENCFF606TLG, ENCFF954ARP 1158502 ENCODE Processing Pipeline 34a5700cde69e790e5c187442420698b https://www.encodeproject.org/files/ENCFF408UEE/@@download/ENCFF408UEE.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF954ARP bed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF179SPI, ENCFF261VSL, ENCFF525ERJ, ENCFF819FNM 1182246 ENCODE Processing Pipeline 66f96a75a53c626cc1c7125c5b09a498 https://www.encodeproject.org/files/ENCFF954ARP/@@download/ENCFF954ARP.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF963AUX bigBed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002OOQ 2948749 ENCODE Processing Pipeline f685755315e7912d1d053cddae8a8bde https://www.encodeproject.org/files/ENCFF963AUX/@@download/ENCFF963AUX.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF606TLG bed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF179SPI, ENCFF261VSL, ENCFF819FNM 1101223 ENCODE Processing Pipeline 2c111cebbfb819e5edfdb6834f3077b7 https://www.encodeproject.org/files/ENCFF606TLG/@@download/ENCFF606TLG.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF987XDT bigWig signal p-value ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF179SPI, ENCFF261VSL, ENCFF525ERJ, ENCFF819FNM 483269395 ENCODE Processing Pipeline ae468098ea6ca42b2f889ed1316b12e4 https://www.encodeproject.org/files/ENCFF987XDT/@@download/ENCFF987XDT.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF611CNT bigBed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF954ARP 3403283 ENCODE Processing Pipeline 89690c0a440c748eaa547af80d1a89aa https://www.encodeproject.org/files/ENCFF611CNT/@@download/ENCFF611CNT.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF545JRP bigWig fold change over control ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF525ERJ, ENCFF819FNM 336635957 ENCODE Processing Pipeline 31b1c3c254c9f49c0baa70c7d16346cd https://www.encodeproject.org/files/ENCFF545JRP/@@download/ENCFF545JRP.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF975ORH bigWig fold change over control ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF179SPI, ENCFF261VSL, ENCFF525ERJ, ENCFF819FNM 542554455 ENCODE Processing Pipeline 26b422c80c337c57821993c17e38d223 https://www.encodeproject.org/files/ENCFF975ORH/@@download/ENCFF975ORH.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF815WGW bam unfiltered alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALX, ENCFF018NEO 1285896307 ENCODE Processing Pipeline 65ae1edf4dcf580976a378b92cd1db5a https://www.encodeproject.org/files/ENCFF815WGW/@@download/ENCFF815WGW.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF413TYY bam unfiltered alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF216KEB, ENCFF987JVV 1333705632 ENCODE Processing Pipeline 4a8401bee7f40258ae711d0e2d9f7b7f https://www.encodeproject.org/files/ENCFF413TYY/@@download/ENCFF413TYY.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF507MUR bam alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALX, ENCFF018NEO 594204896 ENCODE Processing Pipeline cf5179b2ef8fb66dfecedc97e96eec4a https://www.encodeproject.org/files/ENCFF507MUR/@@download/ENCFF507MUR.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF775CXO bam alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF216KEB, ENCFF987JVV 733539377 ENCODE Processing Pipeline d96982ce96707d681f15b72264e69a40 https://www.encodeproject.org/files/ENCFF775CXO/@@download/ENCFF775CXO.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF272ZTL bed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF507MUR 1104791 ENCODE Processing Pipeline 4599ca6a23eef4423f80cd576d65a763 https://www.encodeproject.org/files/ENCFF272ZTL/@@download/ENCFF272ZTL.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF624VTS bed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF775CXO 1000350 ENCODE Processing Pipeline b81258120d096b5fe98d24f944f88733 https://www.encodeproject.org/files/ENCFF624VTS/@@download/ENCFF624VTS.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF362DDA bed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF507MUR, ENCFF775CXO 1141640 ENCODE Processing Pipeline 02e87fa891416f9fbdffb435a5e09262 https://www.encodeproject.org/files/ENCFF362DDA/@@download/ENCFF362DDA.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF229IMN bigBed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF272ZTL 3219879 ENCODE Processing Pipeline c2ef7e85ef4e07e79774ff63c7eb12c9 https://www.encodeproject.org/files/ENCFF229IMN/@@download/ENCFF229IMN.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF980GRF bigBed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF624VTS 2957978 ENCODE Processing Pipeline 3f3205b2c0588f51b0dede59864c8265 https://www.encodeproject.org/files/ENCFF980GRF/@@download/ENCFF980GRF.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF010YBG bigBed narrowPeak peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362DDA 3306864 ENCODE Processing Pipeline f2288bb2e58a93c59956129a4cf84699 https://www.encodeproject.org/files/ENCFF010YBG/@@download/ENCFF010YBG.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF173BOZ bigWig signal p-value ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF507MUR 444184714 ENCODE Processing Pipeline dca3fa35c9fa898c8a5a66633a4a1793 https://www.encodeproject.org/files/ENCFF173BOZ/@@download/ENCFF173BOZ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF841PRN bigWig signal p-value ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF775CXO 386974893 ENCODE Processing Pipeline f603e378b8e37c4bec2ff722fc03bc6f https://www.encodeproject.org/files/ENCFF841PRN/@@download/ENCFF841PRN.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF603UVQ bigWig signal p-value ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF507MUR, ENCFF775CXO 464596684 ENCODE Processing Pipeline b254f71b84d1c3b0aae0cb54173ced11 https://www.encodeproject.org/files/ENCFF603UVQ/@@download/ENCFF603UVQ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF883FER bigWig fold change over control ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF507MUR 291620974 ENCODE Processing Pipeline 1bf617f174bf49c3eb7b4efd25166da0 https://www.encodeproject.org/files/ENCFF883FER/@@download/ENCFF883FER.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF489DEE bigWig fold change over control ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF775CXO 357419807 ENCODE Processing Pipeline 0fba35c09c2e8dcaacd1fda57d05c722 https://www.encodeproject.org/files/ENCFF489DEE/@@download/ENCFF489DEE.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF817VNI bigWig fold change over control ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF507MUR, ENCFF775CXO 536524907 ENCODE Processing Pipeline 1bcd683cc71e600a931b504678359df3 https://www.encodeproject.org/files/ENCFF817VNI/@@download/ENCFF817VNI.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF069LTB bed narrowPeak replicated peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF272ZTL, ENCFF362DDA, ENCFF624VTS 1143304 ENCODE Processing Pipeline c727e2773457770d8cafaa67cc8ecbb4 https://www.encodeproject.org/files/ENCFF069LTB/@@download/ENCFF069LTB.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF123DZJ bigBed narrowPeak replicated peaks ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069LTB 2512395 ENCODE Processing Pipeline 588a779ca1c35bcec3145acd3a3c3f37 https://www.encodeproject.org/files/ENCFF123DZJ/@@download/ENCFF123DZJ.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF876HRO fastq reads ENCSR227UFB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 1 50 single-ended 924106938 Richard Myers, HAIB 508ea5a542027dea2fe8389d373814f6 SRA:SRR5111321 https://www.encodeproject.org/files/ENCFF876HRO/@@download/ENCFF876HRO.fastq.gz Illumina HiSeq 2000 released low read depth ENCFF306XML bam unfiltered alignments ENCSR227UFB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 ENCFF018NEO, ENCFF876HRO 1048155067 ENCODE Processing Pipeline 875d675872f5b4df782ee85b0f81e808 https://www.encodeproject.org/files/ENCFF306XML/@@download/ENCFF306XML.bam mm10 released low read depth ENCFF503YHJ bam alignments ENCSR227UFB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 50 ENCFF018NEO, ENCFF876HRO 806993697 ENCODE Processing Pipeline 43dc22eee288c327beb98d68aee02fba https://www.encodeproject.org/files/ENCFF503YHJ/@@download/ENCFF503YHJ.bam mm10 released low read depth ENCFF001ZUR fastq reads ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 596917202 Bing Ren, UCSD 1ee4da3686be266caea2ee863bf97c27 SRA:SRR3651468 https://www.encodeproject.org/files/ENCFF001ZUR/@@download/ENCFF001ZUR.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF001ZVD fastq reads ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 759514963 Bing Ren, UCSD 01449d31d98260546b1d2c956d3fee5b SRA:SRR3651467 https://www.encodeproject.org/files/ENCFF001ZVD/@@download/ENCFF001ZVD.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF554UVM bam unfiltered alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZVD, ENCFF806TVZ 992861014 ENCODE Processing Pipeline d6b4e765f0ab317dc79deb33f0cea0f0 https://www.encodeproject.org/files/ENCFF554UVM/@@download/ENCFF554UVM.bam mm10-minimal archived low read length, low read depth ENCFF794CMP bam unfiltered alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUR, ENCFF806TVZ 787278600 ENCODE Processing Pipeline 479e52c702a7061a71151ca2ebe9a1a3 https://www.encodeproject.org/files/ENCFF794CMP/@@download/ENCFF794CMP.bam mm10-minimal archived low read length, low read depth ENCFF066KEA bam alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZVD, ENCFF806TVZ 620969361 ENCODE Processing Pipeline 8bdff91f6153fcc3a8d14a8d47f913ef https://www.encodeproject.org/files/ENCFF066KEA/@@download/ENCFF066KEA.bam mm10-minimal archived low read length, low read depth ENCFF657TOI bam alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUR, ENCFF806TVZ 496705310 ENCODE Processing Pipeline df3f22c34c3d68726aee7f1205f6f9ca https://www.encodeproject.org/files/ENCFF657TOI/@@download/ENCFF657TOI.bam mm10-minimal archived low read length, low read depth ENCFF611UXH bam unfiltered alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVD, ENCFF018NEO 994314344 ENCODE Processing Pipeline c8bee9b7080066b35768d17e94a819ef https://www.encodeproject.org/files/ENCFF611UXH/@@download/ENCFF611UXH.bam mm10 released low read length, low read depth ENCFF735XMC bam alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVD, ENCFF018NEO 620757190 ENCODE Processing Pipeline 5ec2ae9113042d3db4792ffef7771097 https://www.encodeproject.org/files/ENCFF735XMC/@@download/ENCFF735XMC.bam mm10 released low read length, low read depth ENCFF130PCO bam alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUR, ENCFF018NEO 496537331 ENCODE Processing Pipeline a6c0b8123249805a23cd344e8598bd3f https://www.encodeproject.org/files/ENCFF130PCO/@@download/ENCFF130PCO.bam mm10 released low read length, low read depth ENCFF830XBS bam unfiltered alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUR, ENCFF018NEO 788553689 ENCODE Processing Pipeline 95931c02ef765c19655cea29fc1e9e07 https://www.encodeproject.org/files/ENCFF830XBS/@@download/ENCFF830XBS.bam mm10 released low read length, low read depth ENCFF001ZUI fastq reads ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 603380631 Bing Ren, UCSD 2c24d2e9b33a8f9a2678427bf75e4ff4 SRA:SRR3651311 https://www.encodeproject.org/files/ENCFF001ZUI/@@download/ENCFF001ZUI.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF001ZUJ fastq reads ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 525668292 Bing Ren, UCSD 898027ed592b360dfc6a36e74707ced8 SRA:SRR3651312 https://www.encodeproject.org/files/ENCFF001ZUJ/@@download/ENCFF001ZUJ.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF085KXU bam unfiltered alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUI, ENCFF806TVZ 789625373 ENCODE Processing Pipeline a5b6930230403b3f98b95c4cc0298566 https://www.encodeproject.org/files/ENCFF085KXU/@@download/ENCFF085KXU.bam mm10-minimal archived low read length, low read depth ENCFF074QPO bam unfiltered alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUJ, ENCFF806TVZ 692694424 ENCODE Processing Pipeline 49408470a879c4c50e55e085af07a9e8 https://www.encodeproject.org/files/ENCFF074QPO/@@download/ENCFF074QPO.bam mm10-minimal archived low read length, low read depth ENCFF265KAG bam alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUI, ENCFF806TVZ 494305032 ENCODE Processing Pipeline 17b47d3908de6178c77b04698d67d241 https://www.encodeproject.org/files/ENCFF265KAG/@@download/ENCFF265KAG.bam mm10-minimal archived low read length, low read depth ENCFF851KTA bam alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUJ, ENCFF806TVZ 436066949 ENCODE Processing Pipeline 5efacfe83be1b576e2746d2dc149ade9 https://www.encodeproject.org/files/ENCFF851KTA/@@download/ENCFF851KTA.bam mm10-minimal archived low read length, low read depth ENCFF184CUE bam unfiltered alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUJ, ENCFF018NEO 693815331 ENCODE Processing Pipeline 65960e6aa686f98e7ce7cfe24aa3291b https://www.encodeproject.org/files/ENCFF184CUE/@@download/ENCFF184CUE.bam mm10 released low read length, low read depth ENCFF376FGM bam unfiltered alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUI, ENCFF018NEO 790753627 ENCODE Processing Pipeline 24bf5c83e5b77b41596b7cfc0ba0dfea https://www.encodeproject.org/files/ENCFF376FGM/@@download/ENCFF376FGM.bam mm10 released low read length, low read depth ENCFF512NUW bam alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUI, ENCFF018NEO 494136712 ENCODE Processing Pipeline cb55bf8dcd342c3359011437e543b2c2 https://www.encodeproject.org/files/ENCFF512NUW/@@download/ENCFF512NUW.bam mm10 released low read length, low read depth ENCFF377IXU bam alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUJ, ENCFF018NEO 435916622 ENCODE Processing Pipeline 5a0e9f5c3b0d69548b089c5185c4f49f https://www.encodeproject.org/files/ENCFF377IXU/@@download/ENCFF377IXU.bam mm10 released low read length, low read depth ENCFF002BVD fastq reads ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 36 single-ended 636779641 Bing Ren, UCSD fbee9c25001d68048a5aa92cf341423d SRA:SRR3653277 https://www.encodeproject.org/files/ENCFF002BVD/@@download/ENCFF002BVD.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVJ fastq reads ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 36 single-ended 630571353 Bing Ren, UCSD 59f2a0166a57302b9e37911c458f1106 SRA:SRR3653280 https://www.encodeproject.org/files/ENCFF002BVJ/@@download/ENCFF002BVJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVF fastq reads ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 646604710 Bing Ren, UCSD 75e727ad68682fd8fa46fa0ce2c1d5d4 SRA:SRR3653278 https://www.encodeproject.org/files/ENCFF002BVF/@@download/ENCFF002BVF.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BVH fastq reads ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 697063202 Bing Ren, UCSD 360c11665b5a6c28e3f19cf4154e7522 SRA:SRR3653281 https://www.encodeproject.org/files/ENCFF002BVH/@@download/ENCFF002BVH.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF093LOL fastq reads ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 3 50 single-ended 1152337402 Bing Ren, UCSD c9485021856c0bb84145e4baff714bf7 SRA:SRR3653279 https://www.encodeproject.org/files/ENCFF093LOL/@@download/ENCFF093LOL.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF957YVR fastq reads ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 3 50 single-ended 850910544 Bing Ren, UCSD feaea898c50f4957e73a19573016d769 SRA:SRR3653282 https://www.encodeproject.org/files/ENCFF957YVR/@@download/ENCFF957YVR.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF236CTX bam alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BVD, ENCFF002BVF, ENCFF093LOL, ENCFF806TVZ 1354409610 ENCODE Processing Pipeline 4f086256cdea315dba5d359bc5bbe5c2 https://www.encodeproject.org/files/ENCFF236CTX/@@download/ENCFF236CTX.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF075FNV bam alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BVH, ENCFF002BVJ, ENCFF806TVZ, ENCFF957YVR 1337655023 ENCODE Processing Pipeline 8e05c7b21841a74317ddcc369a86e0a7 https://www.encodeproject.org/files/ENCFF075FNV/@@download/ENCFF075FNV.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF791UAE bed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF075FNV, ENCFF807GND, ENCFF841RBB 1796091 ENCODE Processing Pipeline 261934eb1502f4e645191e6449675f96 https://www.encodeproject.org/files/ENCFF791UAE/@@download/ENCFF791UAE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF765LKC bed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF236CTX, ENCFF807GND, ENCFF841RBB 2623889 ENCODE Processing Pipeline cb8bfc3dffc4b26766b91635c7f735b2 https://www.encodeproject.org/files/ENCFF765LKC/@@download/ENCFF765LKC.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF038OJR bigBed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF791UAE 3583315 ENCODE Processing Pipeline 03aafc1d6a326b86df244acfb853e427 https://www.encodeproject.org/files/ENCFF038OJR/@@download/ENCFF038OJR.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF047WMF bed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF075FNV, ENCFF236CTX, ENCFF807GND, ENCFF841RBB 1733722 ENCODE Processing Pipeline d56850953e37adc0dcdb906b21c8d356 https://www.encodeproject.org/files/ENCFF047WMF/@@download/ENCFF047WMF.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF464IYH bigBed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF765LKC 6223220 ENCODE Processing Pipeline e33678aba1187648198ab90bb134d759 https://www.encodeproject.org/files/ENCFF464IYH/@@download/ENCFF464IYH.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF147WWR bigBed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047WMF 4125603 ENCODE Processing Pipeline 2e58b3f7d092bb1edbc32676178af2f7 https://www.encodeproject.org/files/ENCFF147WWR/@@download/ENCFF147WWR.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF396CKD bigWig signal p-value ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF075FNV, ENCFF807GND, ENCFF841RBB 442591194 ENCODE Processing Pipeline 7793178bed2e4fe257546ef766fc73e9 https://www.encodeproject.org/files/ENCFF396CKD/@@download/ENCFF396CKD.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF598YJB bigWig signal p-value ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF075FNV, ENCFF236CTX, ENCFF807GND, ENCFF841RBB 531038792 ENCODE Processing Pipeline d0cadd7ee6fcb625d518099b9916834d https://www.encodeproject.org/files/ENCFF598YJB/@@download/ENCFF598YJB.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF840VDR bigWig signal p-value ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF236CTX, ENCFF807GND, ENCFF841RBB 464736932 ENCODE Processing Pipeline d4b50dc08f929e61d2ebeb335cd83c31 https://www.encodeproject.org/files/ENCFF840VDR/@@download/ENCFF840VDR.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF642VMX bigWig fold change over control ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF075FNV, ENCFF807GND, ENCFF841RBB 500971997 ENCODE Processing Pipeline 1424f82aeb99dac6aadf29c394895403 https://www.encodeproject.org/files/ENCFF642VMX/@@download/ENCFF642VMX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF267DPB bigBed narrowPeak replicated peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF146AQM 3474228 ENCODE Processing Pipeline c9b64bb798c8f30c9947c42942090007 https://www.encodeproject.org/files/ENCFF267DPB/@@download/ENCFF267DPB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF714PXH bigWig fold change over control ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF236CTX, ENCFF807GND, ENCFF841RBB 478256236 ENCODE Processing Pipeline 29de766db3d83a4110fbc14e347494d7 https://www.encodeproject.org/files/ENCFF714PXH/@@download/ENCFF714PXH.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF479XTQ bigWig fold change over control ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF075FNV, ENCFF236CTX, ENCFF807GND, ENCFF841RBB 804068533 ENCODE Processing Pipeline 072e5e7f8bc07de90d4d769817cd9b46 https://www.encodeproject.org/files/ENCFF479XTQ/@@download/ENCFF479XTQ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF146AQM bed narrowPeak replicated peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF047WMF, ENCFF765LKC, ENCFF791UAE 1740473 ENCODE Processing Pipeline fd8636313b5d8a66436954f280fbdfa3 https://www.encodeproject.org/files/ENCFF146AQM/@@download/ENCFF146AQM.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF866IOH bam unfiltered alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVD, ENCFF002BVF, ENCFF018NEO, ENCFF093LOL 2652257311 ENCODE Processing Pipeline 6c149ff620c3beda1a34d64e21a5e540 https://www.encodeproject.org/files/ENCFF866IOH/@@download/ENCFF866IOH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF230JHD bam unfiltered alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVH, ENCFF002BVJ, ENCFF018NEO, ENCFF957YVR 2463295866 ENCODE Processing Pipeline a393d84e366b610317f1e0e0cac505e3 https://www.encodeproject.org/files/ENCFF230JHD/@@download/ENCFF230JHD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF021TZE bam alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVD, ENCFF002BVF, ENCFF018NEO, ENCFF093LOL 1158933431 ENCODE Processing Pipeline 54138d9ebe9b3655eaa468ce7cb823bf https://www.encodeproject.org/files/ENCFF021TZE/@@download/ENCFF021TZE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF964PCP bam alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVH, ENCFF002BVJ, ENCFF018NEO, ENCFF957YVR 1173236553 ENCODE Processing Pipeline 2ee066fb730156c5c5e235605ec53b4d https://www.encodeproject.org/files/ENCFF964PCP/@@download/ENCFF964PCP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF721GTW bed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF804FRH, ENCFF964PCP 1854024 ENCODE Processing Pipeline 7552e12218ad48669e71cd5d40563ae2 https://www.encodeproject.org/files/ENCFF721GTW/@@download/ENCFF721GTW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF855ZGD bed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF021TZE, ENCFF804FRH 1575166 ENCODE Processing Pipeline 4e521cc9d634f19ea43efa18ed947511 https://www.encodeproject.org/files/ENCFF855ZGD/@@download/ENCFF855ZGD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF603YAV bed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF021TZE, ENCFF804FRH, ENCFF964PCP 1683062 ENCODE Processing Pipeline 2d3e5483a22a44079736abaf00f6701d https://www.encodeproject.org/files/ENCFF603YAV/@@download/ENCFF603YAV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF220SKQ bigBed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF721GTW 3714537 ENCODE Processing Pipeline 302cea447fe30c98f797784311c44724 https://www.encodeproject.org/files/ENCFF220SKQ/@@download/ENCFF220SKQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF415WZE bigBed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF855ZGD 2920638 ENCODE Processing Pipeline 34df7d03ffdc3319c6614c6d859022cc https://www.encodeproject.org/files/ENCFF415WZE/@@download/ENCFF415WZE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF091LDN bigBed narrowPeak peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF603YAV 4033759 ENCODE Processing Pipeline 2b99d1e7c8f36aba9e882b238c85b8d6 https://www.encodeproject.org/files/ENCFF091LDN/@@download/ENCFF091LDN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF900SOM bigWig signal p-value ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF804FRH, ENCFF964PCP 473053602 ENCODE Processing Pipeline f64d08a30900e54f6fabeb0496b7739d https://www.encodeproject.org/files/ENCFF900SOM/@@download/ENCFF900SOM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF327MKB bigWig signal p-value ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF021TZE, ENCFF804FRH 269020073 ENCODE Processing Pipeline c22cc828493c0151bc723f125e6901da https://www.encodeproject.org/files/ENCFF327MKB/@@download/ENCFF327MKB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF842GCT bigWig signal p-value ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF021TZE, ENCFF804FRH, ENCFF964PCP 528953046 ENCODE Processing Pipeline 417d1ce73032b68d8fc3b9d1ec57f6d9 https://www.encodeproject.org/files/ENCFF842GCT/@@download/ENCFF842GCT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF268AVE bigWig fold change over control ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF804FRH, ENCFF964PCP 495695219 ENCODE Processing Pipeline e6272f030a9b52b93f358bfd6dc3f411 https://www.encodeproject.org/files/ENCFF268AVE/@@download/ENCFF268AVE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF154AGS bigWig fold change over control ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF021TZE, ENCFF804FRH 380085096 ENCODE Processing Pipeline cb937ffd08d5bd4d46a01fac78da6964 https://www.encodeproject.org/files/ENCFF154AGS/@@download/ENCFF154AGS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF559KOX bigWig fold change over control ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF021TZE, ENCFF804FRH, ENCFF964PCP 782484567 ENCODE Processing Pipeline d703e7e35e1ec8373bf1480243fa6309 https://www.encodeproject.org/files/ENCFF559KOX/@@download/ENCFF559KOX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF691YBS bed narrowPeak replicated peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF603YAV, ENCFF721GTW, ENCFF855ZGD 1649169 ENCODE Processing Pipeline 53fd47884941bd339700f7664f19cd1e https://www.encodeproject.org/files/ENCFF691YBS/@@download/ENCFF691YBS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF668JPP bigBed narrowPeak replicated peaks ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF691YBS 3313014 ENCODE Processing Pipeline e3009937e22ba7faf3b7e21ebe7a67d9 https://www.encodeproject.org/files/ENCFF668JPP/@@download/ENCFF668JPP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001LYX bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001LZE 1592509699 Ross Hardison, PennState 59809b97cb8b2e318633e33c03da49b4 https://www.encodeproject.org/files/ENCFF001LYX/@@download/ENCFF001LYX.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001LYY bigBed broadPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE ENCFF001YCO 2776587 Ross Hardison, PennState 85ade0d3936c5d5b9ab44884e7046b9b https://www.encodeproject.org/files/ENCFF001LYY/@@download/ENCFF001LYY.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001LYZ bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 ENCFF001LZG 2468531961 Ross Hardison, PennState ef68ed9506a0bd87d14b0470418e27d8 https://www.encodeproject.org/files/ENCFF001LYZ/@@download/ENCFF001LYZ.bam mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001LZA bigBed broadPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 1 ENCFF001YCP 2204594 Ross Hardison, PennState 14b2ec571d957e1d0acb077412353746 https://www.encodeproject.org/files/ENCFF001LZA/@@download/ENCFF001LZA.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001LZB bigBed broadPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 1 ENCFF001YCQ 2346263 Ross Hardison, PennState 5bda3baf86bb355136c45e7b776ae58a https://www.encodeproject.org/files/ENCFF001LZB/@@download/ENCFF001LZB.bigBed mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001LZC bigWig signal ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 1 3552492733 Ross Hardison, PennState d3cf084ca6cd62c4096090a620d541e8 https://www.encodeproject.org/files/ENCFF001LZC/@@download/ENCFF001LZC.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001LZD bigWig signal ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 1 5003656433 Ross Hardison, PennState d6faf7637f750b0521e0901379e73c96 https://www.encodeproject.org/files/ENCFF001LZD/@@download/ENCFF001LZD.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001LZE fastq reads ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1308394208 Ross Hardison, PennState 657359ab743e3db9a241d578b5e33cb6 https://www.encodeproject.org/files/ENCFF001LZE/@@download/ENCFF001LZE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001LZF bigWig signal ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 5460042635 Ross Hardison, PennState 0402081b9189ecf14fcbd6aebf95c3af https://www.encodeproject.org/files/ENCFF001LZF/@@download/ENCFF001LZF.bigWig mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001LZG fastq reads ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 1 55 single-ended 2122962984 Ross Hardison, PennState db17a99182cc0d17ef43f9dc6130758b https://www.encodeproject.org/files/ENCFF001LZG/@@download/ENCFF001LZG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MPG/ released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001YCO bed broadPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1436286 Ross Hardison, PennState ffa498b4a6c54f68b9060d649d00f78f https://www.encodeproject.org/files/ENCFF001YCO/@@download/ENCFF001YCO.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YCP bed broadPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 1 912121 Ross Hardison, PennState 7d6719a9c4c414f68a2353ada28e969a https://www.encodeproject.org/files/ENCFF001YCP/@@download/ENCFF001YCP.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YCQ bed broadPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 1 1159590 Ross Hardison, PennState aa76443f233231944901d1ffbcfa40af https://www.encodeproject.org/files/ENCFF001YCQ/@@download/ENCFF001YCQ.bed.gz mm9 archived mixed read lengths, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF857SXQ bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 ENCFF001LZG, ENCFF806TVZ 2017143359 ENCODE Processing Pipeline a5ce169b3279965a0a683c1fa11cc427 https://www.encodeproject.org/files/ENCFF857SXQ/@@download/ENCFF857SXQ.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF450KLN bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001LZE, ENCFF806TVZ 1229190906 ENCODE Processing Pipeline 2835c19d273343ecd7dc50b28745a591 https://www.encodeproject.org/files/ENCFF450KLN/@@download/ENCFF450KLN.bam mm10-minimal archived mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF468YQK bam unfiltered alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF001LZG, ENCFF018NEO 1976523067 ENCODE Processing Pipeline 6de4656c4e27c3e2b054954a7b60ee5a https://www.encodeproject.org/files/ENCFF468YQK/@@download/ENCFF468YQK.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF505WQO bam unfiltered alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF001LZE, ENCFF018NEO 1661733554 ENCODE Processing Pipeline 4e499ed6827655cb0bfb81980a20e4e6 https://www.encodeproject.org/files/ENCFF505WQO/@@download/ENCFF505WQO.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF707WFE bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF001LZG, ENCFF018NEO 1475412355 ENCODE Processing Pipeline 4d860d01e2b7b271c97a01f4f3eb648f https://www.encodeproject.org/files/ENCFF707WFE/@@download/ENCFF707WFE.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF821GWN bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF001LZE, ENCFF018NEO 1228913503 ENCODE Processing Pipeline f499f6d620afbb6dd8542e223127dd84 https://www.encodeproject.org/files/ENCFF821GWN/@@download/ENCFF821GWN.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF200RVW bigBed narrowPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 ENCFF076OVR 9468612 ENCODE Processing Pipeline 274c543199b06f7f105024f7e5d54b69 https://www.encodeproject.org/files/ENCFF200RVW/@@download/ENCFF200RVW.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF194XBB bed narrowPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 ENCFF089UFL, ENCFF821GWN, ENCFF984QUA 5118488 ENCODE Processing Pipeline 3e9889afb570f474e04ccee4e6e9222a https://www.encodeproject.org/files/ENCFF194XBB/@@download/ENCFF194XBB.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF076OVR bed narrowPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 ENCFF089UFL, ENCFF707WFE, ENCFF984QUA 3685392 ENCODE Processing Pipeline 93941d971bb902af7fcd644073e9ba9b https://www.encodeproject.org/files/ENCFF076OVR/@@download/ENCFF076OVR.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF114TRR bigBed narrowPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF177ZIQ 12015835 ENCODE Processing Pipeline 7bd0e2be571cfc5c1b1d83fc6923611f https://www.encodeproject.org/files/ENCFF114TRR/@@download/ENCFF114TRR.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF177ZIQ bed narrowPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF089UFL, ENCFF707WFE, ENCFF821GWN, ENCFF984QUA 4969643 ENCODE Processing Pipeline 0fd5aaed07d2296b56233ef976d9d38b https://www.encodeproject.org/files/ENCFF177ZIQ/@@download/ENCFF177ZIQ.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF617SDT bigBed narrowPeak peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 ENCFF194XBB 12246108 ENCODE Processing Pipeline 8908c075d2847ae6bab76f8836a73d30 https://www.encodeproject.org/files/ENCFF617SDT/@@download/ENCFF617SDT.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF391WFG bigWig signal p-value ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 ENCFF089UFL, ENCFF821GWN, ENCFF984QUA 1016201755 ENCODE Processing Pipeline 3fd0136a8a51d9134e2764e359eb47b0 https://www.encodeproject.org/files/ENCFF391WFG/@@download/ENCFF391WFG.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF113UWQ bigWig signal p-value ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 ENCFF089UFL, ENCFF707WFE, ENCFF984QUA 1176934722 ENCODE Processing Pipeline e09397ad57f053fcf8c53d955511bbb5 https://www.encodeproject.org/files/ENCFF113UWQ/@@download/ENCFF113UWQ.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF462HVN bigWig signal p-value ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF089UFL, ENCFF707WFE, ENCFF821GWN, ENCFF984QUA 1406547121 ENCODE Processing Pipeline 257d87e5077af11ccff32321f5e49c89 https://www.encodeproject.org/files/ENCFF462HVN/@@download/ENCFF462HVN.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF897NBR bigWig fold change over control ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 ENCFF089UFL, ENCFF821GWN, ENCFF984QUA 699203981 ENCODE Processing Pipeline 961819edbaf53078f047720bff138356 https://www.encodeproject.org/files/ENCFF897NBR/@@download/ENCFF897NBR.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF101LAO bigWig fold change over control ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 ENCFF089UFL, ENCFF707WFE, ENCFF984QUA 1091875075 ENCODE Processing Pipeline 963a15ac9bb4ab05ca62129d698ea302 https://www.encodeproject.org/files/ENCFF101LAO/@@download/ENCFF101LAO.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF289VIM bigWig fold change over control ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF089UFL, ENCFF707WFE, ENCFF821GWN, ENCFF984QUA 1344146179 ENCODE Processing Pipeline d5c7363d8a2bab5d2c1b7ae14d793048 https://www.encodeproject.org/files/ENCFF289VIM/@@download/ENCFF289VIM.bigWig mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF364LCM bed narrowPeak replicated peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF076OVR, ENCFF177ZIQ, ENCFF194XBB 4206951 ENCODE Processing Pipeline 3cb06bc55ec1ebb557ef064aeaee620e https://www.encodeproject.org/files/ENCFF364LCM/@@download/ENCFF364LCM.bed.gz mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF521LSN bigBed narrowPeak replicated peaks ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF364LCM 7357170 ENCODE Processing Pipeline ee7cbf624a1b77d3128d23114d04d04d https://www.encodeproject.org/files/ENCFF521LSN/@@download/ENCFF521LSN.bigBed mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF001KZZ bigBed broadPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZT 2576131 Bing Ren, UCSD 958bace9365e61163896fb3ae7b946ff https://www.encodeproject.org/files/ENCFF001KZZ/@@download/ENCFF001KZZ.bigBed mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAA bam alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001LAJ 1711215918 Bing Ren, UCSD 181e082fba677eab648b93bebcfb6d34 https://www.encodeproject.org/files/ENCFF001LAA/@@download/ENCFF001LAA.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAB bam alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001LAI 1503740989 Bing Ren, UCSD 7c4f16ab09a2c9a9e61a826406f5e7b2 https://www.encodeproject.org/files/ENCFF001LAB/@@download/ENCFF001LAB.bam mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAC bigWig signal ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001LAA, ENCFF001LAB 67281518 Bing Ren, UCSD d7a17f6484c3fe25997c64f5ebe07a1a https://www.encodeproject.org/files/ENCFF001LAC/@@download/ENCFF001LAC.bigWig mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAI fastq reads ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1472644577 Bing Ren, UCSD 9b2c9f5ba209a325333b4df4694c5603 https://www.encodeproject.org/files/ENCFF001LAI/@@download/ENCFF001LAI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ archived low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAJ fastq reads ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1675805378 Bing Ren, UCSD 59f5f3945bb187602fb4309a07953bcb https://www.encodeproject.org/files/ENCFF001LAJ/@@download/ENCFF001LAJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF786ODW/ archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001XZT bed broadPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001LAA, ENCFF001LAB 1806856 Bing Ren, UCSD c5892f6934cd5a9cadfe89aefc01668f https://www.encodeproject.org/files/ENCFF001XZT/@@download/ENCFF001XZT.bed.gz mm9 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF423MDR bam alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001LAJ, ENCFF806TVZ 1111765907 ENCODE Processing Pipeline a3c5309e63999697cacee7ac52191956 https://www.encodeproject.org/files/ENCFF423MDR/@@download/ENCFF423MDR.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF087CKS bam alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001LAI, ENCFF806TVZ 986845272 ENCODE Processing Pipeline c65b23128fbabbf1d33f283187ff4e5d https://www.encodeproject.org/files/ENCFF087CKS/@@download/ENCFF087CKS.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF505TVW bam unfiltered alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001LAI, ENCFF018NEO 1471506482 ENCODE Processing Pipeline 879292c546faa478191a8a2a698199bb https://www.encodeproject.org/files/ENCFF505TVW/@@download/ENCFF505TVW.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF917TEP bam unfiltered alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001LAJ, ENCFF018NEO 1668874254 ENCODE Processing Pipeline d2d8cf15a55f41ec1165ca9cf09a93cd https://www.encodeproject.org/files/ENCFF917TEP/@@download/ENCFF917TEP.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF115LRO bam alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001LAJ, ENCFF018NEO 976173956 ENCODE Processing Pipeline 8487e2501d7decad79b0d64730406776 https://www.encodeproject.org/files/ENCFF115LRO/@@download/ENCFF115LRO.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF338JEZ bam alignments ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001LAI, ENCFF018NEO 865462042 ENCODE Processing Pipeline b5cbcb18fab032eae6820a52d999321f https://www.encodeproject.org/files/ENCFF338JEZ/@@download/ENCFF338JEZ.bam mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF959YOK bed narrowPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF115LRO, ENCFF132CII, ENCFF338JEZ, ENCFF379WSY 3146498 ENCODE Processing Pipeline e479332f76f6864df8dfd8c8405eeec5 https://www.encodeproject.org/files/ENCFF959YOK/@@download/ENCFF959YOK.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF196ZNU bigWig fold change over control ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF115LRO, ENCFF132CII, ENCFF379WSY 439377114 ENCODE Processing Pipeline 95b20be4b6b7bb3ed5706cf94b803ce8 https://www.encodeproject.org/files/ENCFF196ZNU/@@download/ENCFF196ZNU.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF655QIE bed narrowPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF115LRO, ENCFF132CII, ENCFF379WSY 3486866 ENCODE Processing Pipeline 67528bc20603cb31bc61d1b93cb48d25 https://www.encodeproject.org/files/ENCFF655QIE/@@download/ENCFF655QIE.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF811LUK bigBed narrowPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF707GCD 9606227 ENCODE Processing Pipeline e98012e743ce8915b92f94f3114360d1 https://www.encodeproject.org/files/ENCFF811LUK/@@download/ENCFF811LUK.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF621HKB bigWig signal p-value ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF115LRO, ENCFF132CII, ENCFF379WSY 471680314 ENCODE Processing Pipeline 4af1dd33f014fe8bb42f372514a0ae1f https://www.encodeproject.org/files/ENCFF621HKB/@@download/ENCFF621HKB.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF143GYQ bigWig fold change over control ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF338JEZ, ENCFF379WSY 394242584 ENCODE Processing Pipeline 1eb535c55a9634a1c260a0a604cde279 https://www.encodeproject.org/files/ENCFF143GYQ/@@download/ENCFF143GYQ.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF351SQF bed narrowPeak replicated peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF655QIE, ENCFF707GCD, ENCFF959YOK 3526257 ENCODE Processing Pipeline 538d1ab9adb065b699d85b801a8ce340 https://www.encodeproject.org/files/ENCFF351SQF/@@download/ENCFF351SQF.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF416IAS bigBed narrowPeak replicated peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF351SQF 6436046 ENCODE Processing Pipeline 0e8a859d6e5473e7108e9ec718c79cf3 https://www.encodeproject.org/files/ENCFF416IAS/@@download/ENCFF416IAS.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF707GCD bed narrowPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF338JEZ, ENCFF379WSY 4143281 ENCODE Processing Pipeline 595bcd0e71350fc1d85174563d579c80 https://www.encodeproject.org/files/ENCFF707GCD/@@download/ENCFF707GCD.bed.gz mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF871OOB bigBed narrowPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF655QIE 8261709 ENCODE Processing Pipeline cb1db1f254cb9f105a915c32f3ff3ca1 https://www.encodeproject.org/files/ENCFF871OOB/@@download/ENCFF871OOB.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF933DHI bigBed narrowPeak peaks ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF959YOK 7212902 ENCODE Processing Pipeline 201746a7a4c40f5c821943be201d95b7 https://www.encodeproject.org/files/ENCFF933DHI/@@download/ENCFF933DHI.bigBed mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF795SED bigWig fold change over control ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF115LRO, ENCFF132CII, ENCFF338JEZ, ENCFF379WSY 689028032 ENCODE Processing Pipeline b88486f67ea850ff43ab11b36dc87717 https://www.encodeproject.org/files/ENCFF795SED/@@download/ENCFF795SED.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF309QDJ bigWig signal p-value ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF338JEZ, ENCFF379WSY 396770096 ENCODE Processing Pipeline c0fb5348b27bdbcc53366a3aa1d04d10 https://www.encodeproject.org/files/ENCFF309QDJ/@@download/ENCFF309QDJ.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF729ARM bigWig signal p-value ENCSR000CFW ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF115LRO, ENCFF132CII, ENCFF338JEZ, ENCFF379WSY 527951047 ENCODE Processing Pipeline 14b1319e6bb5dc4006fa382bcaf6cd20 https://www.encodeproject.org/files/ENCFF729ARM/@@download/ENCFF729ARM.bigWig mm10 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001NZQ bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001OAK 304978724 Michael Snyder, Stanford 305d4dab9ed9fdc98f805ab3dacc3780 https://www.encodeproject.org/files/ENCFF001NZQ/@@download/ENCFF001NZQ.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZR bigBed narrowPeak peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKH 1244432 Michael Snyder, Stanford 22971f235f76d1d77c202280bf88574b https://www.encodeproject.org/files/ENCFF001NZR/@@download/ENCFF001NZR.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZT bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001OAL 323742481 Michael Snyder, Stanford 1db31aabefb63522aad5511f917057b3 https://www.encodeproject.org/files/ENCFF001NZT/@@download/ENCFF001NZT.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZV bigWig signal ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZQ, ENCFF001NZT 257719985 Michael Snyder, Stanford 9b3d6df822a9baa8489e45045097e226 https://www.encodeproject.org/files/ENCFF001NZV/@@download/ENCFF001NZV.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OAK fastq reads ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1040353345 Michael Snyder, Stanford 3b0b2057afc1e08fc7d17d125da5309c https://www.encodeproject.org/files/ENCFF001OAK/@@download/ENCFF001OAK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001OAL fastq reads ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 996866848 Michael Snyder, Stanford 5d029df4421309bd7f1a7d7fcf4f0205 https://www.encodeproject.org/files/ENCFF001OAL/@@download/ENCFF001OAL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKH bed narrowPeak peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZQ, ENCFF001NZT 543358 Michael Snyder, Stanford f8001675e162b21ce1f3ce73d19536d5 https://www.encodeproject.org/files/ENCFF001YKH/@@download/ENCFF001YKH.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF826DYG bam unfiltered alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001OAK, ENCFF018NEO 1164498957 ENCODE Processing Pipeline 4569a5b9a49efecb13cbd6aa399f35c3 https://www.encodeproject.org/files/ENCFF826DYG/@@download/ENCFF826DYG.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF185EQI bam unfiltered alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001OAL, ENCFF018NEO 1120410416 ENCODE Processing Pipeline 6b89a1d9282b9e4283569b651272990f https://www.encodeproject.org/files/ENCFF185EQI/@@download/ENCFF185EQI.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF786IOU bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001OAL, ENCFF018NEO 624554444 ENCODE Processing Pipeline 174917d639368c4625ef5d459ba81277 https://www.encodeproject.org/files/ENCFF786IOU/@@download/ENCFF786IOU.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF170PTO bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001OAK, ENCFF018NEO 610372530 ENCODE Processing Pipeline ed21ab15d964b02e675ebde2c1caf9b0 https://www.encodeproject.org/files/ENCFF170PTO/@@download/ENCFF170PTO.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF287NCT bigWig signal p-value ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF170PTO 268053567 ENCODE Processing Pipeline 55cf934ef7f409e1fad100181761cdd6 https://www.encodeproject.org/files/ENCFF287NCT/@@download/ENCFF287NCT.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF320TNR bigWig signal p-value ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF786IOU 343910137 ENCODE Processing Pipeline 224e49cd9d447a7a838e4dc1356b11d8 https://www.encodeproject.org/files/ENCFF320TNR/@@download/ENCFF320TNR.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF323QCH bigWig signal p-value ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF170PTO, ENCFF786IOU 408756607 ENCODE Processing Pipeline e454db15e2d236fa1f053f975d6baab3 https://www.encodeproject.org/files/ENCFF323QCH/@@download/ENCFF323QCH.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF993PYW bigWig fold change over control ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF170PTO 257591988 ENCODE Processing Pipeline 7928c80d55759864b9906d18c2b22a83 https://www.encodeproject.org/files/ENCFF993PYW/@@download/ENCFF993PYW.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF026AMD bigWig fold change over control ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF170PTO, ENCFF786IOU 435419263 ENCODE Processing Pipeline ceb5cb1300fcdfcf68189db7ac13e8aa https://www.encodeproject.org/files/ENCFF026AMD/@@download/ENCFF026AMD.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF075LJM bigWig fold change over control ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF786IOU 263319859 ENCODE Processing Pipeline 0c51942a1e18f74a2458928931d2ed94 https://www.encodeproject.org/files/ENCFF075LJM/@@download/ENCFF075LJM.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF884FLM bed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF170PTO 5334088 ENCODE Processing Pipeline ba48a71ef46d02e7856a129046ae81fd https://www.encodeproject.org/files/ENCFF884FLM/@@download/ENCFF884FLM.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF258ZVQ bed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF786IOU 5353988 ENCODE Processing Pipeline 73b245284cb6803eb4c3e2ff1349e79c https://www.encodeproject.org/files/ENCFF258ZVQ/@@download/ENCFF258ZVQ.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF862BHO bed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF170PTO, ENCFF786IOU 5931217 ENCODE Processing Pipeline 44997d69e3f6acbadee44ac9e6badfa7 https://www.encodeproject.org/files/ENCFF862BHO/@@download/ENCFF862BHO.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF877TIO bigBed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF884FLM 12735918 ENCODE Processing Pipeline 64988d838fce886c6890beb544871025 https://www.encodeproject.org/files/ENCFF877TIO/@@download/ENCFF877TIO.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF783MLF bigBed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF258ZVQ 12692729 ENCODE Processing Pipeline 7980d5f1b2570c3e567303a33c0c40c4 https://www.encodeproject.org/files/ENCFF783MLF/@@download/ENCFF783MLF.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF870BCB bigBed narrowPeak peaks and background as input for IDR ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF862BHO 12915685 ENCODE Processing Pipeline 01801bba895e02566b61869ff27b9a41 https://www.encodeproject.org/files/ENCFF870BCB/@@download/ENCFF870BCB.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF050TEJ bed narrowPeak conservative idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF258ZVQ, ENCFF547MET, ENCFF862BHO, ENCFF884FLM 533988 ENCODE Processing Pipeline ea05e8d8654c293e296094492da70d34 https://www.encodeproject.org/files/ENCFF050TEJ/@@download/ENCFF050TEJ.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF817PDS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF050TEJ 1193667 ENCODE Processing Pipeline dfb107c2bc0e98c34ad05f7750c0acdf https://www.encodeproject.org/files/ENCFF817PDS/@@download/ENCFF817PDS.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF700PEG bed narrowPeak optimal idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF258ZVQ, ENCFF547MET, ENCFF862BHO, ENCFF884FLM 539838 ENCODE Processing Pipeline 9ce5e95026614e56564b749973555582 https://www.encodeproject.org/files/ENCFF700PEG/@@download/ENCFF700PEG.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF853JJG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF700PEG 1201894 ENCODE Processing Pipeline 51f2652ba0cae7ef04ce122eb149adce https://www.encodeproject.org/files/ENCFF853JJG/@@download/ENCFF853JJG.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001ZUL fastq reads ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 592904124 Bing Ren, UCSD 73364ca2a66e1f9d94c0aecba5b71d77 SRA:SRR3652693 https://www.encodeproject.org/files/ENCFF001ZUL/@@download/ENCFF001ZUL.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, low read depth ENCFF001ZUQ fastq reads ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 885547737 Bing Ren, UCSD 8cee34226138d975589ec6cf9d782ba9 SRA:SRR3652694 https://www.encodeproject.org/files/ENCFF001ZUQ/@@download/ENCFF001ZUQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, low read depth ENCFF580IUL bam alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUL, ENCFF806TVZ 493080778 ENCODE Processing Pipeline 1565f2c523fa6173c05009a952845966 https://www.encodeproject.org/files/ENCFF580IUL/@@download/ENCFF580IUL.bam mm10-minimal archived low read length, low read depth ENCFF990MVE bam alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUQ, ENCFF806TVZ 708767719 ENCODE Processing Pipeline 90ffbff8a174c511567b0b2cec186dbd https://www.encodeproject.org/files/ENCFF990MVE/@@download/ENCFF990MVE.bam mm10-minimal archived low read length, low read depth ENCFF591PRZ bigBed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032PKS 1835406 ENCODE Processing Pipeline fdc87fd66032c1600e35a4d5594bc7de https://www.encodeproject.org/files/ENCFF591PRZ/@@download/ENCFF591PRZ.bigBed mm10-minimal archived low read length, low read depth ENCFF811VWM bed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF976TWF, ENCFF990MVE 456720 ENCODE Processing Pipeline 8157f384461ac1c628cdebfeaf89e953 https://www.encodeproject.org/files/ENCFF811VWM/@@download/ENCFF811VWM.bed.gz mm10-minimal archived low read length, low read depth ENCFF641YYH bed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF580IUL, ENCFF976TWF, ENCFF990MVE 462130 ENCODE Processing Pipeline fabd3539f737fd585df3050528047d49 https://www.encodeproject.org/files/ENCFF641YYH/@@download/ENCFF641YYH.bed.gz mm10-minimal archived low read length, low read depth ENCFF233EKN bigWig signal p-value ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF976TWF, ENCFF990MVE 293036667 ENCODE Processing Pipeline 9cf56e2f5a8fa5ac5d0bdee39c673dd5 https://www.encodeproject.org/files/ENCFF233EKN/@@download/ENCFF233EKN.bigWig mm10-minimal archived low read length, low read depth ENCFF723GFX bigBed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus 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read depth ENCFF359DFQ bigWig signal p-value ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF580IUL, ENCFF976TWF 282840300 ENCODE Processing Pipeline 80f0ca5127262f0d0c5c29f6f60cf02d https://www.encodeproject.org/files/ENCFF359DFQ/@@download/ENCFF359DFQ.bigWig mm10-minimal archived low read length, low read depth ENCFF485NDI bigWig fold change over control ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF223QEB, ENCFF976TWF, ENCFF990MVE 330053542 ENCODE Processing Pipeline 079a3c0a670726e16f3c85ea978fe841 https://www.encodeproject.org/files/ENCFF485NDI/@@download/ENCFF485NDI.bigWig mm10-minimal archived low read length, low read depth ENCFF206AXY bigWig signal p-value ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF580IUL, ENCFF976TWF, ENCFF990MVE 499452365 ENCODE Processing Pipeline eae744eeb0458b8ec08555bda960a14a https://www.encodeproject.org/files/ENCFF206AXY/@@download/ENCFF206AXY.bigWig mm10-minimal archived low read length, low read depth ENCFF980CYV bigWig fold change over control ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF223QEB, ENCFF580IUL, ENCFF976TWF 227546961 ENCODE Processing Pipeline 5cb353c9e260450e3878d534ee25d2a2 https://www.encodeproject.org/files/ENCFF980CYV/@@download/ENCFF980CYV.bigWig mm10-minimal archived low read length, low read depth ENCFF177JQZ bigWig fold change over control ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF223QEB, ENCFF580IUL, ENCFF976TWF, ENCFF990MVE 483064538 ENCODE Processing Pipeline 1858105c62971011688b3db4db73fcf6 https://www.encodeproject.org/files/ENCFF177JQZ/@@download/ENCFF177JQZ.bigWig mm10-minimal archived low read length, low read depth ENCFF922FNB bed narrowPeak replicated peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032PKS, ENCFF641YYH, ENCFF811VWM 545684 ENCODE Processing Pipeline 916597665e074fee7ff7e98bbe3a90e8 https://www.encodeproject.org/files/ENCFF922FNB/@@download/ENCFF922FNB.bed.gz mm10-minimal archived low read length, low read depth ENCFF790WJA bigBed narrowPeak replicated peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF922FNB 1393370 ENCODE Processing Pipeline 1d066fad65b152cb815d40b1deb020d4 https://www.encodeproject.org/files/ENCFF790WJA/@@download/ENCFF790WJA.bigBed mm10-minimal archived low read length, low read depth ENCFF456ZTU bam unfiltered alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUQ, ENCFF018NEO 1108788560 ENCODE Processing Pipeline ab8df95728e71346583c98cf973e35dd https://www.encodeproject.org/files/ENCFF456ZTU/@@download/ENCFF456ZTU.bam mm10 released low read length, low read depth ENCFF773CAI bam unfiltered alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUL, ENCFF018NEO 733718431 ENCODE Processing Pipeline a6735fdd2300807f6d213f6e6ffefabf https://www.encodeproject.org/files/ENCFF773CAI/@@download/ENCFF773CAI.bam mm10 released low read length, low read depth ENCFF826NRB bam alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUQ, ENCFF018NEO 708552078 ENCODE Processing Pipeline 9632085c107900be33c66de2e11e6f9c https://www.encodeproject.org/files/ENCFF826NRB/@@download/ENCFF826NRB.bam mm10 released low read length, low read depth ENCFF894SLJ bam alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUL, ENCFF018NEO 492940729 ENCODE Processing Pipeline 342fd20e002db6bd9881b44dd8c4cd47 https://www.encodeproject.org/files/ENCFF894SLJ/@@download/ENCFF894SLJ.bam mm10 released low read length, low read depth ENCFF569UGV bed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF826NRB, ENCFF903TSE 456957 ENCODE Processing Pipeline ed389cf0985a942b4f449594d6356dd3 https://www.encodeproject.org/files/ENCFF569UGV/@@download/ENCFF569UGV.bed.gz mm10 released low read length, low read depth ENCFF197MSS bed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF894SLJ, ENCFF903TSE 571219 ENCODE Processing Pipeline 57b2a86e5a28b84946251f2c886e73a1 https://www.encodeproject.org/files/ENCFF197MSS/@@download/ENCFF197MSS.bed.gz mm10 released low read length, low read depth ENCFF922BWE bed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF563TGK, ENCFF826NRB, ENCFF894SLJ, ENCFF903TSE 461813 ENCODE Processing Pipeline 92b2ac90089d6306432d0cae64dfa584 https://www.encodeproject.org/files/ENCFF922BWE/@@download/ENCFF922BWE.bed.gz mm10 released low read length, low read depth ENCFF739YFD bigBed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF569UGV 1545568 ENCODE Processing Pipeline f72f458e2b14395c0d03d397e9b2ce04 https://www.encodeproject.org/files/ENCFF739YFD/@@download/ENCFF739YFD.bigBed mm10 released low read length, low read depth ENCFF686YSS bigBed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF197MSS 1837909 ENCODE Processing Pipeline bb764fce6b16ecdbc60839b88266b55a https://www.encodeproject.org/files/ENCFF686YSS/@@download/ENCFF686YSS.bigBed mm10 released low read length, low read depth ENCFF839KWT bigBed narrowPeak peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF922BWE 1542963 ENCODE Processing Pipeline b24d89f502c4a8c6d070121f95b6ce27 https://www.encodeproject.org/files/ENCFF839KWT/@@download/ENCFF839KWT.bigBed mm10 released low read length, low read depth ENCFF629JQH bigWig signal p-value ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF826NRB, ENCFF903TSE 326618536 ENCODE Processing Pipeline 26c11471cb493bfd150a421dfa603893 https://www.encodeproject.org/files/ENCFF629JQH/@@download/ENCFF629JQH.bigWig mm10 released low read length, low read depth ENCFF698YGG bigWig signal p-value ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF894SLJ, ENCFF903TSE 287629088 ENCODE Processing Pipeline 3fc679e913f97ea7d398ca8a7151c56b https://www.encodeproject.org/files/ENCFF698YGG/@@download/ENCFF698YGG.bigWig mm10 released low read length, low read depth ENCFF319OFW bigWig signal p-value ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF563TGK, ENCFF826NRB, ENCFF894SLJ, ENCFF903TSE 455301494 ENCODE Processing Pipeline 1932838bc84e79eaea84db50178c84a7 https://www.encodeproject.org/files/ENCFF319OFW/@@download/ENCFF319OFW.bigWig mm10 released low read length, low read depth ENCFF381WWL bigWig fold change over control ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563TGK, ENCFF826NRB, ENCFF903TSE 330172449 ENCODE Processing Pipeline 184befe56fb6984929bac5e0f4eea987 https://www.encodeproject.org/files/ENCFF381WWL/@@download/ENCFF381WWL.bigWig mm10 released low read length, low read depth ENCFF405LIR bigWig fold change over control ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF563TGK, ENCFF894SLJ, ENCFF903TSE 227778899 ENCODE Processing Pipeline 8a9b34ed49b4c491d3df880b64888a26 https://www.encodeproject.org/files/ENCFF405LIR/@@download/ENCFF405LIR.bigWig mm10 released low read length, low read depth ENCFF306YUK bigWig fold change over control ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF563TGK, ENCFF826NRB, ENCFF894SLJ, ENCFF903TSE 456040314 ENCODE Processing Pipeline e731afca5557c2a0b7176422683d2e7b https://www.encodeproject.org/files/ENCFF306YUK/@@download/ENCFF306YUK.bigWig mm10 released low read length, low read depth ENCFF928TGM bed narrowPeak replicated peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF197MSS, ENCFF569UGV, ENCFF922BWE 526275 ENCODE Processing Pipeline f3fc1d093c9f73f887ba64c16885b60a https://www.encodeproject.org/files/ENCFF928TGM/@@download/ENCFF928TGM.bed.gz mm10 released low read length, low read depth ENCFF504JXV bigBed narrowPeak replicated peaks ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF928TGM 1374691 ENCODE Processing Pipeline fc7a0ecfd87475d811499114fac5c828 https://www.encodeproject.org/files/ENCFF504JXV/@@download/ENCFF504JXV.bigBed mm10 released low read length, low read depth ENCFF995MZR fastq reads ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1831213260 Bing Ren, UCSD 1608e993026d10c1eb7146f1941287bc SRA:SRR3652466 https://www.encodeproject.org/files/ENCFF995MZR/@@download/ENCFF995MZR.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF456KTU fastq reads ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 844883813 Bing Ren, UCSD 68f214aa4b4241cd9ee2bbc3ae744b67 SRA:SRR3652464 https://www.encodeproject.org/files/ENCFF456KTU/@@download/ENCFF456KTU.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF939WZI fastq reads ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 2074766176 Bing Ren, UCSD 71b4c094c4c56501450956c14aea9979 SRA:SRR3652465 https://www.encodeproject.org/files/ENCFF939WZI/@@download/ENCFF939WZI.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF629PFQ bam alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF456KTU, ENCFF806TVZ, ENCFF939WZI 2095028393 ENCODE Processing Pipeline 93eb5a03f5e9ef139fe18818ab174348 https://www.encodeproject.org/files/ENCFF629PFQ/@@download/ENCFF629PFQ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF440FTI bam alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF995MZR 1381619020 ENCODE Processing Pipeline 633b3a7643d765b9bdd122b5f1aa986c https://www.encodeproject.org/files/ENCFF440FTI/@@download/ENCFF440FTI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF392WDT bed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF440FTI, ENCFF881FJP 622305 ENCODE Processing Pipeline c5f572d284ec7d3f6c3cf464ef0884b0 https://www.encodeproject.org/files/ENCFF392WDT/@@download/ENCFF392WDT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF474DZH bigBed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF541SWM 1855026 ENCODE Processing Pipeline f1bc2341eff930d3d781d5f4eb08408b https://www.encodeproject.org/files/ENCFF474DZH/@@download/ENCFF474DZH.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF206VVQ bigBed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF632DOA 1911784 ENCODE Processing Pipeline d590da5bf292f7b26c2cd37d98aa0431 https://www.encodeproject.org/files/ENCFF206VVQ/@@download/ENCFF206VVQ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF668ZRT bigBed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF392WDT 1844068 ENCODE Processing Pipeline a064f8375e136b7391d331b96ae39304 https://www.encodeproject.org/files/ENCFF668ZRT/@@download/ENCFF668ZRT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF886JUS bigWig signal p-value ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF440FTI, ENCFF881FJP 806408520 ENCODE Processing Pipeline fa695498177471945f26a7e4474b9cfc https://www.encodeproject.org/files/ENCFF886JUS/@@download/ENCFF886JUS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF103OWS bigWig signal p-value ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF629PFQ, ENCFF881FJP 1000849965 ENCODE Processing Pipeline f1ce7cc151697d51cbf04a6f3f848f8e https://www.encodeproject.org/files/ENCFF103OWS/@@download/ENCFF103OWS.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF541SWM bed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF629PFQ, ENCFF881FJP 617801 ENCODE Processing Pipeline efb04e6e421232834324d7613cb6107d https://www.encodeproject.org/files/ENCFF541SWM/@@download/ENCFF541SWM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF632DOA bed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF440FTI, ENCFF629PFQ, ENCFF881FJP 659909 ENCODE Processing Pipeline b0a1e64f3434c81780cabedd22c50f66 https://www.encodeproject.org/files/ENCFF632DOA/@@download/ENCFF632DOA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF773LVF bigWig signal p-value ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF440FTI, ENCFF629PFQ, ENCFF881FJP 1220843076 ENCODE Processing Pipeline c7b059c801de7e461b42dd6e66fe9c27 https://www.encodeproject.org/files/ENCFF773LVF/@@download/ENCFF773LVF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF648YJJ bigWig fold change over control ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF440FTI, ENCFF881FJP 733948512 ENCODE Processing Pipeline 0d28ac97bd9792af9f16deafa1ef69c7 https://www.encodeproject.org/files/ENCFF648YJJ/@@download/ENCFF648YJJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF443NPT bigWig fold change over control ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF629PFQ, ENCFF881FJP 920591900 ENCODE Processing Pipeline ac06d70b8b96dcdf164a5f1437781dda https://www.encodeproject.org/files/ENCFF443NPT/@@download/ENCFF443NPT.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF023VHY bigWig fold change over control ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF440FTI, ENCFF629PFQ, ENCFF881FJP 1239886735 ENCODE Processing Pipeline 614dfc023e2b8c278dd23e6a7d947749 https://www.encodeproject.org/files/ENCFF023VHY/@@download/ENCFF023VHY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF358LWK bigBed narrowPeak replicated peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF992HIL 1614046 ENCODE Processing Pipeline ce8e01420c7fc050fcbfc68fb71af785 https://www.encodeproject.org/files/ENCFF358LWK/@@download/ENCFF358LWK.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF992HIL bed narrowPeak replicated peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF392WDT, ENCFF541SWM, ENCFF632DOA 699623 ENCODE Processing Pipeline 932d8c72af1b35199fc8a2d34486f316 https://www.encodeproject.org/files/ENCFF992HIL/@@download/ENCFF992HIL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF825MKZ bam unfiltered alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF456KTU, ENCFF939WZI 3294438780 ENCODE Processing Pipeline 67572bc5ca7cbb66295cd134e288e910 https://www.encodeproject.org/files/ENCFF825MKZ/@@download/ENCFF825MKZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF070BIQ bam unfiltered alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF995MZR 2044904238 ENCODE Processing Pipeline f35f1f6dbd268befc63a78b15b745c16 https://www.encodeproject.org/files/ENCFF070BIQ/@@download/ENCFF070BIQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF031RFH bam alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF995MZR 1381432055 ENCODE Processing Pipeline aec83f9b6eec407ea573c9bf4d7e10b9 https://www.encodeproject.org/files/ENCFF031RFH/@@download/ENCFF031RFH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF492LOP bam alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF456KTU, ENCFF939WZI 2094728185 ENCODE Processing Pipeline 5ccfdde3e038c8d9a1d3c91172bbad1c https://www.encodeproject.org/files/ENCFF492LOP/@@download/ENCFF492LOP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF042TME bed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031RFH, ENCFF209HPI, ENCFF634NAV 628612 ENCODE Processing Pipeline f856171fd0ec1ad9c36168e77e6bbfcd https://www.encodeproject.org/files/ENCFF042TME/@@download/ENCFF042TME.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF833TAD bed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF492LOP, ENCFF634NAV 624431 ENCODE Processing Pipeline 25700acd775de9a6736358f259726f4c https://www.encodeproject.org/files/ENCFF833TAD/@@download/ENCFF833TAD.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF046JLJ bed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031RFH, ENCFF209HPI, ENCFF492LOP, ENCFF634NAV 659964 ENCODE Processing Pipeline 281150b85d3b67017c3acb293be92e32 https://www.encodeproject.org/files/ENCFF046JLJ/@@download/ENCFF046JLJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF852AQY bigBed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF042TME 1859152 ENCODE Processing Pipeline ca09994b8e259d2d89c885f9e3e4278e https://www.encodeproject.org/files/ENCFF852AQY/@@download/ENCFF852AQY.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF508KVM bigBed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF833TAD 1867715 ENCODE Processing Pipeline fcf484687aeac5288d778147435dbebb https://www.encodeproject.org/files/ENCFF508KVM/@@download/ENCFF508KVM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF732APT bigBed narrowPeak peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF046JLJ 1912120 ENCODE Processing Pipeline b8c492b416a2c5f00e1631458cab1786 https://www.encodeproject.org/files/ENCFF732APT/@@download/ENCFF732APT.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF753ROS bigWig signal p-value ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031RFH, ENCFF209HPI, ENCFF634NAV 785581704 ENCODE Processing Pipeline ed0498b927375450f55e562829c7dc74 https://www.encodeproject.org/files/ENCFF753ROS/@@download/ENCFF753ROS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF360IRD bigWig signal p-value ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF492LOP, ENCFF634NAV 968250915 ENCODE Processing Pipeline 4242e7c85d3f2732a6eaccb3aacbe5c3 https://www.encodeproject.org/files/ENCFF360IRD/@@download/ENCFF360IRD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF589EUE bigWig signal p-value ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031RFH, ENCFF209HPI, ENCFF492LOP, ENCFF634NAV 1064863024 ENCODE Processing Pipeline 2fb5dc29a7dff0a1b3ce03561f5168d3 https://www.encodeproject.org/files/ENCFF589EUE/@@download/ENCFF589EUE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF385IGC bigWig fold change over control ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031RFH, ENCFF209HPI, ENCFF634NAV 803293147 ENCODE Processing Pipeline 3f1bd5d69b24cc637c63e8d957d11350 https://www.encodeproject.org/files/ENCFF385IGC/@@download/ENCFF385IGC.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF117USN bigWig fold change over control ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF492LOP, ENCFF634NAV 1039084710 ENCODE Processing Pipeline d3f545cbe8e32b576463ca1c5864ee7e https://www.encodeproject.org/files/ENCFF117USN/@@download/ENCFF117USN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF960DLF bigWig fold change over control ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF031RFH, ENCFF209HPI, ENCFF492LOP, ENCFF634NAV 1235197455 ENCODE Processing Pipeline 519ff9fbae25f355805dfa7ed1e58650 https://www.encodeproject.org/files/ENCFF960DLF/@@download/ENCFF960DLF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF588HJN bed narrowPeak replicated peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF042TME, ENCFF046JLJ, ENCFF833TAD 703532 ENCODE Processing Pipeline b54436cf0b09127c05b5623deec988d8 https://www.encodeproject.org/files/ENCFF588HJN/@@download/ENCFF588HJN.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF490WHB bigBed narrowPeak replicated peaks ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF588HJN 1627170 ENCODE Processing Pipeline 108f99d4e0465e6bacaa1c48c6004ed2 https://www.encodeproject.org/files/ENCFF490WHB/@@download/ENCFF490WHB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001NJA bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NJE 453933185 Michael Snyder, Stanford d76e76640164a22f4aeec1e76e1c815b https://www.encodeproject.org/files/ENCFF001NJA/@@download/ENCFF001NJA.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NJB bigBed narrowPeak peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIG 1054002 Michael Snyder, Stanford 436cfd8a4325177bce8019bd00ff0e0e https://www.encodeproject.org/files/ENCFF001NJB/@@download/ENCFF001NJB.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NJC bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NJG 423220263 Michael Snyder, Stanford 5eba895f635ab04d96e75ecb671edd58 https://www.encodeproject.org/files/ENCFF001NJC/@@download/ENCFF001NJC.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NJE fastq reads ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 884769813 Michael Snyder, Stanford 48ffacbf3eabf41a5e245f70ad680215 https://www.encodeproject.org/files/ENCFF001NJE/@@download/ENCFF001NJE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001NJG fastq reads ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 834214375 Michael Snyder, Stanford d46c6270ab6b8ca1b7a5a9ae3a760f6c https://www.encodeproject.org/files/ENCFF001NJG/@@download/ENCFF001NJG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001NJI bigWig signal ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJA, ENCFF001NJC 335882901 Michael Snyder, Stanford 8746777158b111bd66b2c9ece8c287ab https://www.encodeproject.org/files/ENCFF001NJI/@@download/ENCFF001NJI.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001YIG bed narrowPeak peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NJA, ENCFF001NJC 415807 Michael Snyder, Stanford ab4eb2af283a1792d09af4449be00956 https://www.encodeproject.org/files/ENCFF001YIG/@@download/ENCFF001YIG.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF365UBS bam unfiltered alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJE, ENCFF018NEO 984365746 ENCODE Processing Pipeline 4ea3d98f595b30bd70ed72cb292ee9e9 https://www.encodeproject.org/files/ENCFF365UBS/@@download/ENCFF365UBS.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF034IRP bam unfiltered alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJG, ENCFF018NEO 927550946 ENCODE Processing Pipeline c7387203f50685ccec54d1e41190a41b https://www.encodeproject.org/files/ENCFF034IRP/@@download/ENCFF034IRP.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF202TYU bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJG, ENCFF018NEO 630006638 ENCODE Processing Pipeline 59fea24ecf173545cad05e19d4a614f3 https://www.encodeproject.org/files/ENCFF202TYU/@@download/ENCFF202TYU.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF174MFL bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJE, ENCFF018NEO 685199691 ENCODE Processing Pipeline a9c0deaa5880b710483fc38dd018c7c1 https://www.encodeproject.org/files/ENCFF174MFL/@@download/ENCFF174MFL.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF313IVE bigWig signal p-value ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF174MFL, ENCFF339ZWC 228844211 ENCODE Processing Pipeline 82a9e36257a0392e369e2fceab853ef0 https://www.encodeproject.org/files/ENCFF313IVE/@@download/ENCFF313IVE.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF191SOA bigWig signal p-value ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF202TYU, ENCFF339ZWC 230390915 ENCODE Processing Pipeline 9957e7fac5b1e34b2e610d7aa7a7d3cc https://www.encodeproject.org/files/ENCFF191SOA/@@download/ENCFF191SOA.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF274UMU bigWig fold change over control ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF174MFL, ENCFF339ZWC 275375837 ENCODE Processing Pipeline fa0e3ad011c763d509c2125b80ee3dad https://www.encodeproject.org/files/ENCFF274UMU/@@download/ENCFF274UMU.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF805NUN bigWig signal p-value ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF174MFL, ENCFF202TYU, ENCFF339ZWC 205493342 ENCODE Processing Pipeline b3b8ea36e74e0b6b3aab8069c91c8d5b https://www.encodeproject.org/files/ENCFF805NUN/@@download/ENCFF805NUN.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF715NQF bigWig fold change over control ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF202TYU, ENCFF339ZWC 261189217 ENCODE Processing Pipeline 7cc62e807e67fd0ac238f6f525a25f2d https://www.encodeproject.org/files/ENCFF715NQF/@@download/ENCFF715NQF.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF850JWX bed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF174MFL, ENCFF339ZWC 5011809 ENCODE Processing Pipeline 3ad4aa021d3f8d25de00fa6fa27c3949 https://www.encodeproject.org/files/ENCFF850JWX/@@download/ENCFF850JWX.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF507OCS bed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF174MFL, ENCFF202TYU, ENCFF339ZWC 5653467 ENCODE Processing Pipeline 6d3e84d244c610272384c63aee0d23df https://www.encodeproject.org/files/ENCFF507OCS/@@download/ENCFF507OCS.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF775LKP bigWig fold change over control ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF174MFL, ENCFF202TYU, ENCFF339ZWC 460088093 ENCODE Processing Pipeline dc0e50db05c803860a1cada02bf2dc6f https://www.encodeproject.org/files/ENCFF775LKP/@@download/ENCFF775LKP.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF915TKM bed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF202TYU, ENCFF339ZWC 4887758 ENCODE Processing Pipeline 66b9857514f55657888914e48a6c132d https://www.encodeproject.org/files/ENCFF915TKM/@@download/ENCFF915TKM.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF707CGG bigBed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF915TKM 10439814 ENCODE Processing Pipeline 17dd3383c77e9e4765ec7952c591e964 https://www.encodeproject.org/files/ENCFF707CGG/@@download/ENCFF707CGG.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF653CHL bigBed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF850JWX 12722857 ENCODE Processing Pipeline 4decf1cbb9d572d51b97c1efe710340c https://www.encodeproject.org/files/ENCFF653CHL/@@download/ENCFF653CHL.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF459OJI bed narrowPeak optimal idr thresholded peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF507OCS, ENCFF547MET, ENCFF850JWX, ENCFF915TKM 357561 ENCODE Processing Pipeline fa24b929d1a786ccbdf404690caad384 https://www.encodeproject.org/files/ENCFF459OJI/@@download/ENCFF459OJI.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF655RTJ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF507OCS 12945251 ENCODE Processing Pipeline 26b9b4896edaa69de1c30cb37593f01f https://www.encodeproject.org/files/ENCFF655RTJ/@@download/ENCFF655RTJ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF104SDA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF459OJI 832135 ENCODE Processing Pipeline 2dc962405a4ddc9fdd40f94e9713473b https://www.encodeproject.org/files/ENCFF104SDA/@@download/ENCFF104SDA.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF001ZUM fastq reads ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 493604507 Bing Ren, UCSD 73d3d4ad0432d951a910cda3afdec7f2 SRA:SRR3651205 https://www.encodeproject.org/files/ENCFF001ZUM/@@download/ENCFF001ZUM.fastq.gz Illumina HiSeq 2500 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF001ZUS fastq reads ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 754337289 Bing Ren, UCSD 3c3f26197d45de02cc02b9b7a69f531f SRA:SRR3651207 https://www.encodeproject.org/files/ENCFF001ZUS/@@download/ENCFF001ZUS.fastq.gz Illumina HiSeq 2500 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF204GFG bam alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUS, ENCFF806TVZ 643722325 ENCODE Processing Pipeline 555c10194a809dc0fb2a2478f7753d4c https://www.encodeproject.org/files/ENCFF204GFG/@@download/ENCFF204GFG.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF825VCS fastq reads ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 119673445 Bing Ren, UCSD 63853fe7aec1624936ce58b470dded1b SRA:SRR3651206 https://www.encodeproject.org/files/ENCFF825VCS/@@download/ENCFF825VCS.fastq.gz Illumina HiSeq 2500 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF695ODM bam alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUM, ENCFF806TVZ, ENCFF825VCS 500391340 ENCODE Processing Pipeline 67b159ebe450f1aa6e05048336f4eb65 https://www.encodeproject.org/files/ENCFF695ODM/@@download/ENCFF695ODM.bam mm10-minimal archived mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF541LVF bam unfiltered alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUS, ENCFF018NEO 1000510545 ENCODE Processing Pipeline a9488b8b00cd666c08bccbf5ecb64270 https://www.encodeproject.org/files/ENCFF541LVF/@@download/ENCFF541LVF.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF631YQS bam alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUM, ENCFF018NEO, ENCFF825VCS 472209617 ENCODE Processing Pipeline 15af31be16b5b71e508ff5e8f6bd6499 https://www.encodeproject.org/files/ENCFF631YQS/@@download/ENCFF631YQS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF549NGM bam unfiltered alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUM, ENCFF018NEO, ENCFF825VCS 769279316 ENCODE Processing Pipeline 47503839c74dce4049398b037b5347ff https://www.encodeproject.org/files/ENCFF549NGM/@@download/ENCFF549NGM.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF658BBR bam alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUS, ENCFF018NEO 643497800 ENCODE Processing Pipeline 4f7b29cfb5286acfd9c59f504bff925d https://www.encodeproject.org/files/ENCFF658BBR/@@download/ENCFF658BBR.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF001KBN bam alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KCC 2133470314 Bing Ren, UCSD 825fa968541a76292d83ba3fa8c09fd4 https://www.encodeproject.org/files/ENCFF001KBN/@@download/ENCFF001KBN.bam mm9 archived mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KBO bam alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KCB 967501783 Bing Ren, UCSD 76c9dbf5875198a893a4f5b3c7f5f22b https://www.encodeproject.org/files/ENCFF001KBO/@@download/ENCFF001KBO.bam mm9 archived mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KBP bigBed broadPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWK 714719 Bing Ren, UCSD a74d7b611288d6fa3d2b8fe03f97b2c8 https://www.encodeproject.org/files/ENCFF001KBP/@@download/ENCFF001KBP.bigBed mm9 archived mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KBS bigWig signal ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 56147850 Bing Ren, UCSD 23b35529022c44f8f5fbe5457e28a4d5 https://www.encodeproject.org/files/ENCFF001KBS/@@download/ENCFF001KBS.bigWig mm9 archived mild to moderate bottlenecking missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KCB fastq reads ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1014581427 Bing Ren, UCSD 46ece475baa6e96f23200cc86b00dafc https://www.encodeproject.org/files/ENCFF001KCB/@@download/ENCFF001KCB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCI/ released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KCC fastq reads ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 2410045007 Bing Ren, UCSD 06a8a882ec5ce504afec0298edab5403 https://www.encodeproject.org/files/ENCFF001KCC/@@download/ENCFF001KCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCH/ released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XWK bed broadPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 418417 Bing Ren, UCSD 753935ed3e379a2ea1dfcb66d55866ea https://www.encodeproject.org/files/ENCFF001XWK/@@download/ENCFF001XWK.bed.gz mm9 archived mild to moderate bottlenecking missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF960VJP bam alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KCC, ENCFF018NEO 320596218 ENCODE Processing Pipeline 95687b6a8c81506c1e36850258e9b22e https://www.encodeproject.org/files/ENCFF960VJP/@@download/ENCFF960VJP.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF698UEG bam unfiltered alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KCC, ENCFF018NEO 1790055198 ENCODE Processing Pipeline f246229d129853e215b564edc5fff817 https://www.encodeproject.org/files/ENCFF698UEG/@@download/ENCFF698UEG.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF394EJG bam unfiltered alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KCB, ENCFF018NEO 892008997 ENCODE Processing Pipeline e651211f783afd7b8f21303b207e65dd https://www.encodeproject.org/files/ENCFF394EJG/@@download/ENCFF394EJG.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF864GXH bam alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KCB, ENCFF018NEO 285096625 ENCODE Processing Pipeline 99694d73ae0f61af104fb89646d88347 https://www.encodeproject.org/files/ENCFF864GXH/@@download/ENCFF864GXH.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF204FGO bed narrowPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF020THJ, ENCFF260OJF, ENCFF864GXH, ENCFF960VJP 1870311 ENCODE Processing Pipeline 3e01fc034ce62a862efdd93f5f3d1671 https://www.encodeproject.org/files/ENCFF204FGO/@@download/ENCFF204FGO.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF585EDP bigBed narrowPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF204FGO 4371501 ENCODE Processing Pipeline 52d4e9f9531862f29fb2649a18bdbe61 https://www.encodeproject.org/files/ENCFF585EDP/@@download/ENCFF585EDP.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF438QWF bed narrowPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF020THJ, ENCFF960VJP 1704184 ENCODE Processing Pipeline 533c3feb5d9e4cba2fe1314b7807834b https://www.encodeproject.org/files/ENCFF438QWF/@@download/ENCFF438QWF.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF665IDF bed narrowPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF260OJF, ENCFF864GXH 1586788 ENCODE Processing Pipeline e687a29bce55ee69bf321750286263dd https://www.encodeproject.org/files/ENCFF665IDF/@@download/ENCFF665IDF.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF146NQL bigBed narrowPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF665IDF 3939828 ENCODE Processing Pipeline 9e9d506655acd90b3cf055ec404efd49 https://www.encodeproject.org/files/ENCFF146NQL/@@download/ENCFF146NQL.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF633AEN bigWig fold change over control ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF020THJ, ENCFF960VJP 171216015 ENCODE Processing Pipeline e06b945d7181017134cc620364cfdaf1 https://www.encodeproject.org/files/ENCFF633AEN/@@download/ENCFF633AEN.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF854QRT bigWig signal p-value ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF260OJF, ENCFF864GXH 217760353 ENCODE Processing Pipeline 304bd2f5737daf18d8de055d27b83b2d https://www.encodeproject.org/files/ENCFF854QRT/@@download/ENCFF854QRT.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF492KAT bigWig fold change over control ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF260OJF, ENCFF864GXH 153512608 ENCODE Processing Pipeline 5a0ef793dc8adf995826f8c16db96bcf https://www.encodeproject.org/files/ENCFF492KAT/@@download/ENCFF492KAT.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF431DMS bigWig signal p-value ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF020THJ, ENCFF960VJP 266601592 ENCODE Processing Pipeline b0c8c0c96d22bc60a32807b540bc4901 https://www.encodeproject.org/files/ENCFF431DMS/@@download/ENCFF431DMS.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF207RMM bigBed narrowPeak peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF438QWF 4283861 ENCODE Processing Pipeline 6bea0163d1115171451dd552dea55941 https://www.encodeproject.org/files/ENCFF207RMM/@@download/ENCFF207RMM.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF289GRR bigWig signal p-value ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF020THJ, ENCFF260OJF, ENCFF864GXH, ENCFF960VJP 468009616 ENCODE Processing Pipeline f49f338484ddb95daeccefe2b9dbaf1d https://www.encodeproject.org/files/ENCFF289GRR/@@download/ENCFF289GRR.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF685JMC bed narrowPeak replicated peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF204FGO, ENCFF438QWF, ENCFF665IDF 1287703 ENCODE Processing Pipeline 6e9f507f640a24c852131abc3392b8cd https://www.encodeproject.org/files/ENCFF685JMC/@@download/ENCFF685JMC.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF840JAO bigWig fold change over control ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF020THJ, ENCFF260OJF, ENCFF864GXH, ENCFF960VJP 378708835 ENCODE Processing Pipeline 34526f717d53d8752ffc2552022999db https://www.encodeproject.org/files/ENCFF840JAO/@@download/ENCFF840JAO.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF520DHQ bigBed narrowPeak replicated peaks ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF685JMC 2332064 ENCODE Processing Pipeline 6034fc58da7f3379573ce9a7718c4578 https://www.encodeproject.org/files/ENCFF520DHQ/@@download/ENCFF520DHQ.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF002DQP fastq reads ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 36 single-ended 526658657 Bing Ren, UCSD dfa6470b9f6278153cb8126292034a1e SRA:SRR3651165 https://www.encodeproject.org/files/ENCFF002DQP/@@download/ENCFF002DQP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APV/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQR fastq reads ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 943814635 Bing Ren, UCSD 5e21165f2072650d5c959d04243257a2 SRA:SRR3651166 https://www.encodeproject.org/files/ENCFF002DQR/@@download/ENCFF002DQR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APV/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQS fastq reads ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 3 36 single-ended 1670964670 Bing Ren, UCSD 7f8cfb77990a2232665c2c04959b523e SRA:SRR3651167 https://www.encodeproject.org/files/ENCFF002DQS/@@download/ENCFF002DQS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APV/ released low read length, control low read depth, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQT fastq reads ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 36 single-ended 1398257664 Bing Ren, UCSD e268bbaa44670dd1dd4befabb2449286 SRA:SRR3651163 https://www.encodeproject.org/files/ENCFF002DQT/@@download/ENCFF002DQT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APU/ released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQU fastq reads ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 1337908430 Bing Ren, UCSD 321afcb11be37bec7e9199a0757418f7 SRA:SRR3651164 https://www.encodeproject.org/files/ENCFF002DQU/@@download/ENCFF002DQU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APU/ released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF862TWE bam alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002DQP, ENCFF002DQR, ENCFF002DQS, ENCFF806TVZ 1518863572 ENCODE Processing Pipeline 9b69e6ff6793ac54a951b1c2024b07d9 https://www.encodeproject.org/files/ENCFF862TWE/@@download/ENCFF862TWE.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF221DQT bam alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002DQT, ENCFF002DQU, ENCFF806TVZ 1231438034 ENCODE Processing Pipeline 338d2ef6c049d24b1bb9f26debcf7688 https://www.encodeproject.org/files/ENCFF221DQT/@@download/ENCFF221DQT.bam mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF179UET bigBed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF323FZF 1908780 ENCODE Processing Pipeline 85f5847338cd3c985a55b994dc9f5139 https://www.encodeproject.org/files/ENCFF179UET/@@download/ENCFF179UET.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF414UUV bigWig signal p-value ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF025NCO, ENCFF221DQT, ENCFF228INH 522344762 ENCODE Processing Pipeline aa873b46f867e1ef7d6bf312502b1d43 https://www.encodeproject.org/files/ENCFF414UUV/@@download/ENCFF414UUV.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF323FZF bed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF025NCO, ENCFF221DQT, ENCFF228INH, ENCFF862TWE 887437 ENCODE Processing Pipeline 7bced162d0506d1ec15e8f20880fc48f https://www.encodeproject.org/files/ENCFF323FZF/@@download/ENCFF323FZF.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF520OVT bigBed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF720HDK 2154967 ENCODE Processing Pipeline 1a50443bc2bc098adb1b02a356cec9f6 https://www.encodeproject.org/files/ENCFF520OVT/@@download/ENCFF520OVT.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF720HDK bed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF862TWE 1030427 ENCODE Processing Pipeline 5f7f826d05fa4a56f286e91592ec48bb https://www.encodeproject.org/files/ENCFF720HDK/@@download/ENCFF720HDK.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF513KUM bed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF025NCO, ENCFF221DQT, ENCFF228INH 1034650 ENCODE Processing Pipeline bc6d4dc7f246631ef8fd7a48fbb8a811 https://www.encodeproject.org/files/ENCFF513KUM/@@download/ENCFF513KUM.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF073DNC bigBed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF513KUM 2208006 ENCODE Processing Pipeline 18fce979f03f82c19ee03ed9f4664e6f https://www.encodeproject.org/files/ENCFF073DNC/@@download/ENCFF073DNC.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF187HQH bigWig signal p-value ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF862TWE 603550354 ENCODE Processing Pipeline 19e0da69f5ce29711607cdd0f003e05b https://www.encodeproject.org/files/ENCFF187HQH/@@download/ENCFF187HQH.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF305GCV bigWig fold change over control ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF025NCO, ENCFF221DQT, ENCFF228INH 580686097 ENCODE Processing Pipeline e7fab7aa24799fe828e12f462876dee4 https://www.encodeproject.org/files/ENCFF305GCV/@@download/ENCFF305GCV.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF721RDI bigWig fold change over control ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF862TWE 658469843 ENCODE Processing Pipeline 846c7decbe8697bb7cd014b233b13a92 https://www.encodeproject.org/files/ENCFF721RDI/@@download/ENCFF721RDI.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF777HKF bigWig signal p-value ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF025NCO, ENCFF221DQT, ENCFF228INH, ENCFF862TWE 796126281 ENCODE Processing Pipeline 79a7ae7e7adad2fed008438f9e97fed1 https://www.encodeproject.org/files/ENCFF777HKF/@@download/ENCFF777HKF.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF933IBG bigWig fold change over control ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF025NCO, ENCFF221DQT, ENCFF228INH, ENCFF862TWE 950777241 ENCODE Processing Pipeline 7bbc21e0b1adc5bd040ac6b7b93d94da https://www.encodeproject.org/files/ENCFF933IBG/@@download/ENCFF933IBG.bigWig mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF498MPO bigBed narrowPeak replicated peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF518HCT 1192974 ENCODE Processing Pipeline d707c8c96e68f7da8c2864627b56a8ff https://www.encodeproject.org/files/ENCFF498MPO/@@download/ENCFF498MPO.bigBed mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF518HCT bed narrowPeak replicated peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF323FZF, ENCFF513KUM, ENCFF720HDK 567061 ENCODE Processing Pipeline 6dfb93665d49b6072d1b7456303217d0 https://www.encodeproject.org/files/ENCFF518HCT/@@download/ENCFF518HCT.bed.gz mm10-minimal archived low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF816UAY bam unfiltered alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQT, ENCFF002DQU, ENCFF018NEO 3384594188 ENCODE Processing Pipeline ed05e04fefa3152adfedc6ac3cb45494 https://www.encodeproject.org/files/ENCFF816UAY/@@download/ENCFF816UAY.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF924QNG bam unfiltered alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQP, ENCFF002DQR, ENCFF002DQS, ENCFF018NEO 3903855637 ENCODE Processing Pipeline e85cbd0d371bc7ec34e38b394a36b3fc https://www.encodeproject.org/files/ENCFF924QNG/@@download/ENCFF924QNG.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF175ZLG bam alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQT, ENCFF002DQU, ENCFF018NEO 1230822388 ENCODE Processing Pipeline 67751feb04965c2e390c00b4ccb4995d https://www.encodeproject.org/files/ENCFF175ZLG/@@download/ENCFF175ZLG.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF746FYC bam alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQP, ENCFF002DQR, ENCFF002DQS, ENCFF018NEO 1518204069 ENCODE Processing Pipeline 8026808660132376e40dca3ccefc0bd4 https://www.encodeproject.org/files/ENCFF746FYC/@@download/ENCFF746FYC.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF811JNF bed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF175ZLG, ENCFF396CVK 487778 ENCODE Processing Pipeline d9c2bc64a745bcdbf8f0aa671df9e67a https://www.encodeproject.org/files/ENCFF811JNF/@@download/ENCFF811JNF.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF450LWN bigBed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF811JNF 925930 ENCODE Processing Pipeline 13cfc343ac55afa16cc734c3c09930a7 https://www.encodeproject.org/files/ENCFF450LWN/@@download/ENCFF450LWN.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF412HHJ bigWig signal p-value ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF175ZLG, ENCFF396CVK 392424284 ENCODE Processing Pipeline f1fb943207de20ab820989f0f3d077ea https://www.encodeproject.org/files/ENCFF412HHJ/@@download/ENCFF412HHJ.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF854RAT bigWig fold change over control ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF175ZLG, ENCFF396CVK 434470212 ENCODE Processing Pipeline e7a0b8f01ded0533085c78a86bf2dd16 https://www.encodeproject.org/files/ENCFF854RAT/@@download/ENCFF854RAT.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF053MTF bigBed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF173QTA 1632129 ENCODE Processing Pipeline 20feecbe7d33cb322fcd5a813bcd039d https://www.encodeproject.org/files/ENCFF053MTF/@@download/ENCFF053MTF.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF379VOX bed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF746FYC 935486 ENCODE Processing Pipeline bcd8d8251b96a9c770267542cc13d9c8 https://www.encodeproject.org/files/ENCFF379VOX/@@download/ENCFF379VOX.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF536QUU bigWig signal p-value ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF746FYC 625908389 ENCODE Processing Pipeline 1b711d503b30745bcb1fa6a5afedf3eb https://www.encodeproject.org/files/ENCFF536QUU/@@download/ENCFF536QUU.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF173QTA bed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF175ZLG, ENCFF396CVK, ENCFF506NSJ, ENCFF746FYC 727982 ENCODE Processing Pipeline 0e518f31e6140da5129a47d4fbc69d28 https://www.encodeproject.org/files/ENCFF173QTA/@@download/ENCFF173QTA.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF033QCT bigBed narrowPeak peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF379VOX 2024540 ENCODE Processing Pipeline 30ed7cbed93980572cc715adf9e1782b https://www.encodeproject.org/files/ENCFF033QCT/@@download/ENCFF033QCT.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF686MDN bigWig signal p-value ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF175ZLG, ENCFF396CVK, ENCFF506NSJ, ENCFF746FYC 785706902 ENCODE Processing Pipeline 5a54ee403fefca9b7fa2cfd73f3cacda https://www.encodeproject.org/files/ENCFF686MDN/@@download/ENCFF686MDN.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF855YQP bigWig fold change over control ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF746FYC 703702087 ENCODE Processing Pipeline 0ce1f13ac541b8a96c5dd4c98e49461a https://www.encodeproject.org/files/ENCFF855YQP/@@download/ENCFF855YQP.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF409BJZ bigWig fold change over control ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF175ZLG, ENCFF396CVK, ENCFF506NSJ, ENCFF746FYC 960313180 ENCODE Processing Pipeline 110a368d513b57cb5f5ab46b7ab19356 https://www.encodeproject.org/files/ENCFF409BJZ/@@download/ENCFF409BJZ.bigWig mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF850NRY bed narrowPeak replicated peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF173QTA, ENCFF379VOX, ENCFF811JNF 435378 ENCODE Processing Pipeline c09dd77a9e219f332950d4b2d04a22cb https://www.encodeproject.org/files/ENCFF850NRY/@@download/ENCFF850NRY.bed.gz mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF397NBK bigBed narrowPeak replicated peaks ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF850NRY 969940 ENCODE Processing Pipeline 93174a8fbaddf06e893b83396b172a0a https://www.encodeproject.org/files/ENCFF397NBK/@@download/ENCFF397NBK.bigBed mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF674GBO bam alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF554GAJ, ENCFF806TVZ 1952028024 ENCODE Processing Pipeline 512beb6fd3108512800a6fc42f3a3632 https://www.encodeproject.org/files/ENCFF674GBO/@@download/ENCFF674GBO.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF541RVC bam alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF333CMN, ENCFF806TVZ 1983918846 ENCODE Processing Pipeline 01f2d313bdc3e4037088cd5cff4b4bf8 https://www.encodeproject.org/files/ENCFF541RVC/@@download/ENCFF541RVC.bam mm10-minimal archived sequencing runs labeled as technical replicates ENCFF554GAJ fastq reads ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2344019321 Bing Ren, UCSD 6f87b72150be23d316b320ebe8f29b25 SRA:SRR3651950 https://www.encodeproject.org/files/ENCFF554GAJ/@@download/ENCFF554GAJ.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF333CMN fastq reads ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2393503767 Bing Ren, UCSD cbe931220ac428418eb780727052ad51 SRA:SRR3651952 https://www.encodeproject.org/files/ENCFF333CMN/@@download/ENCFF333CMN.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF444LBW fastq reads ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 646987306 Bing Ren, UCSD 57dc0764848eec4660ad359181b1a039 SRA:SRR3651953 https://www.encodeproject.org/files/ENCFF444LBW/@@download/ENCFF444LBW.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF007ZYG fastq reads ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 773282310 Bing Ren, UCSD 1eff060a3bf1b498901b34be557793b9 SRA:SRR3651951 https://www.encodeproject.org/files/ENCFF007ZYG/@@download/ENCFF007ZYG.fastq.gz Illumina HiSeq 4000 released sequencing runs labeled as technical replicates ENCFF561HVM bam alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF333CMN, ENCFF444LBW 2661159679 ENCODE Processing Pipeline 4342e3381cc83ca4d94457cd197868e8 https://www.encodeproject.org/files/ENCFF561HVM/@@download/ENCFF561HVM.bam mm10 released sequencing runs labeled as technical replicates ENCFF481KHX bam unfiltered alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF333CMN, ENCFF444LBW 3904072321 ENCODE Processing Pipeline 35a4be3f28954c3eb8e7fd90d3564d03 https://www.encodeproject.org/files/ENCFF481KHX/@@download/ENCFF481KHX.bam mm10 released sequencing runs labeled as technical replicates ENCFF962XXR bam alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF007ZYG, ENCFF018NEO, ENCFF554GAJ 2750497632 ENCODE Processing Pipeline dc762894d8996c9001e6785930323c07 https://www.encodeproject.org/files/ENCFF962XXR/@@download/ENCFF962XXR.bam mm10 released sequencing runs labeled as technical replicates ENCFF228UEX bam unfiltered alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF007ZYG, ENCFF018NEO, ENCFF554GAJ 4022582585 ENCODE Processing Pipeline ad8087364cbb180f79fddcbd0fa369c3 https://www.encodeproject.org/files/ENCFF228UEX/@@download/ENCFF228UEX.bam mm10 released sequencing runs labeled as technical replicates ENCFF531KNS fastq reads ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2913812172 Bing Ren, UCSD 1c3fc16824ebe1d0cddf6ee05edc23f4 SRA:SRR3651350 https://www.encodeproject.org/files/ENCFF531KNS/@@download/ENCFF531KNS.fastq.gz Illumina HiSeq 2500 /files/ENCFF324AEZ/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF833RGB fastq reads ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3249318923 Bing Ren, UCSD 23598e56d7384d6eb9f71b5391740c7e SRA:SRR3651351 https://www.encodeproject.org/files/ENCFF833RGB/@@download/ENCFF833RGB.fastq.gz Illumina HiSeq 2500 /files/ENCFF637RQH/ released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF891NNX bam alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF531KNS, ENCFF806TVZ 2172562672 ENCODE Processing Pipeline 54aa5af16fc3411c91447f3dcb545510 https://www.encodeproject.org/files/ENCFF891NNX/@@download/ENCFF891NNX.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF560GLI bam alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF806TVZ, ENCFF833RGB 2058459966 ENCODE Processing Pipeline 4b203bb26c25478302e8940b169a8d8f https://www.encodeproject.org/files/ENCFF560GLI/@@download/ENCFF560GLI.bam mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF911SZN bed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF560GLI 1432524 ENCODE Processing Pipeline 76ec6489dc6f34b865ad132c2bed20dc https://www.encodeproject.org/files/ENCFF911SZN/@@download/ENCFF911SZN.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF889KKD bigBed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF911SZN 3294195 ENCODE Processing Pipeline 25e33b056ee6af2af638fcf64c11037c https://www.encodeproject.org/files/ENCFF889KKD/@@download/ENCFF889KKD.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF997QQO bigBed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF318CTP 2769922 ENCODE Processing Pipeline 85595e5fb069b189dbae4bbed15e8536 https://www.encodeproject.org/files/ENCFF997QQO/@@download/ENCFF997QQO.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF318CTP bed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF891NNX 1190824 ENCODE Processing Pipeline 5bdddaa8311d6ee6864036be4cbdcae6 https://www.encodeproject.org/files/ENCFF318CTP/@@download/ENCFF318CTP.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF886GDG bed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF560GLI, ENCFF891NNX 1280306 ENCODE Processing Pipeline 653f3fccf21c05dbc37a96a0361fe4dc https://www.encodeproject.org/files/ENCFF886GDG/@@download/ENCFF886GDG.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF333EUE bigBed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF886GDG 3705439 ENCODE Processing Pipeline 19398ac64a47e3263b7a67953e23be13 https://www.encodeproject.org/files/ENCFF333EUE/@@download/ENCFF333EUE.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF872TBY bigWig signal p-value ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF560GLI 818167973 ENCODE Processing Pipeline fe4ebaee302ffef622895b4215ef948f https://www.encodeproject.org/files/ENCFF872TBY/@@download/ENCFF872TBY.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF106FHW bigWig signal p-value ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF891NNX 821759317 ENCODE Processing Pipeline 4a0e1c3ff667399e198e2d4f92ed4ee3 https://www.encodeproject.org/files/ENCFF106FHW/@@download/ENCFF106FHW.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF171RJI bigWig signal p-value ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF560GLI, ENCFF891NNX 1165672339 ENCODE Processing Pipeline dfad104d91ec3f90e5f95bb26b345ebb https://www.encodeproject.org/files/ENCFF171RJI/@@download/ENCFF171RJI.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF907IIK bigWig fold change over control ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF560GLI 830025862 ENCODE Processing Pipeline 28accdab36600b1da4715e67db74bd4c https://www.encodeproject.org/files/ENCFF907IIK/@@download/ENCFF907IIK.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF322VUW bigWig fold change over control ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF560GLI, ENCFF891NNX 1260377478 ENCODE Processing Pipeline 49b30351feaa6280ba4774ae16f46baa https://www.encodeproject.org/files/ENCFF322VUW/@@download/ENCFF322VUW.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF207THM bigWig fold change over control ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF891NNX 816591235 ENCODE Processing Pipeline 99f9e07e2b4203eb79e2c405fcdbe355 https://www.encodeproject.org/files/ENCFF207THM/@@download/ENCFF207THM.bigWig mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF222XYU bigBed narrowPeak replicated peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF588XTG 2602232 ENCODE Processing Pipeline 4873e64daa2697f92b709e881f0769ea https://www.encodeproject.org/files/ENCFF222XYU/@@download/ENCFF222XYU.bigBed mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF588XTG bed narrowPeak replicated peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF318CTP, ENCFF886GDG, ENCFF911SZN 1134439 ENCODE Processing Pipeline dde5ac5416f8bb0459b5471718722988 https://www.encodeproject.org/files/ENCFF588XTG/@@download/ENCFF588XTG.bed.gz mm10-minimal archived mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF245XZZ bam unfiltered alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF531KNS 3405013355 ENCODE Processing Pipeline a71918d03fb84c256a2a5012b22dd5e9 https://www.encodeproject.org/files/ENCFF245XZZ/@@download/ENCFF245XZZ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF178INN bam unfiltered alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF833RGB 3685257236 ENCODE Processing Pipeline d6921dcbd7b35cd10ad1f8ea46e09724 https://www.encodeproject.org/files/ENCFF178INN/@@download/ENCFF178INN.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF569YRJ bam alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF531KNS 2172219477 ENCODE Processing Pipeline c1088e76d823d2738d6870048d56abfa https://www.encodeproject.org/files/ENCFF569YRJ/@@download/ENCFF569YRJ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF212YKE bam alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF833RGB 2058115698 ENCODE Processing Pipeline 90af360d186a9568e943c4933af54b10 https://www.encodeproject.org/files/ENCFF212YKE/@@download/ENCFF212YKE.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF289NBH bed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF212YKE, ENCFF904KQI 1354247 ENCODE Processing Pipeline dbc334ac13609955fcf68074cf5d6aab https://www.encodeproject.org/files/ENCFF289NBH/@@download/ENCFF289NBH.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF107DIH bed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF569YRJ, ENCFF814RAT 1169599 ENCODE Processing Pipeline 14523e5a5a2c4ad2ce508f284892e7aa https://www.encodeproject.org/files/ENCFF107DIH/@@download/ENCFF107DIH.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF102BKB bigBed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF289NBH 3174129 ENCODE Processing Pipeline 5e212c221eb4284f8e4823de627db92c https://www.encodeproject.org/files/ENCFF102BKB/@@download/ENCFF102BKB.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF171IQH bed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF212YKE, ENCFF569YRJ, ENCFF814RAT, ENCFF904KQI 1664463 ENCODE Processing Pipeline 4540d4068ae68970537e22023bfc35fe https://www.encodeproject.org/files/ENCFF171IQH/@@download/ENCFF171IQH.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF427GGU bigBed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF107DIH 2734101 ENCODE Processing Pipeline ef04120f2cb2395c9304d7fc3f1528d8 https://www.encodeproject.org/files/ENCFF427GGU/@@download/ENCFF427GGU.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF982NOL bigBed narrowPeak peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF171IQH 4704007 ENCODE Processing Pipeline dbc299d80b43fffebae0bbb30a762e73 https://www.encodeproject.org/files/ENCFF982NOL/@@download/ENCFF982NOL.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF476LTS bigWig signal p-value ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF212YKE, ENCFF904KQI 658587744 ENCODE Processing Pipeline 5c0f4016e6d3e7dd62c63889f74f3cac https://www.encodeproject.org/files/ENCFF476LTS/@@download/ENCFF476LTS.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF367AYZ bigWig signal p-value ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF569YRJ, ENCFF814RAT 566059283 ENCODE Processing Pipeline a91e649945a20ab12a55d841bcfde3fc https://www.encodeproject.org/files/ENCFF367AYZ/@@download/ENCFF367AYZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF324JFA bigWig signal p-value ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF212YKE, ENCFF569YRJ, ENCFF814RAT, ENCFF904KQI 1038643136 ENCODE Processing Pipeline 5336d948dea607e50fee10802bea8236 https://www.encodeproject.org/files/ENCFF324JFA/@@download/ENCFF324JFA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF705MRU bigWig fold change over control ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF212YKE, ENCFF904KQI 798766179 ENCODE Processing Pipeline d7783857ca77baf0ca958d576a3a7a26 https://www.encodeproject.org/files/ENCFF705MRU/@@download/ENCFF705MRU.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF033ASG bigWig fold change over control ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF569YRJ, ENCFF814RAT 783364627 ENCODE Processing Pipeline a6a9a95ee1b93facc414f5bcfdf5dc0b https://www.encodeproject.org/files/ENCFF033ASG/@@download/ENCFF033ASG.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF290BIA bigWig fold change over control ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF212YKE, ENCFF569YRJ, ENCFF814RAT, ENCFF904KQI 1468450658 ENCODE Processing Pipeline 3e6c54de66b27e7dfa026de0c94c950a https://www.encodeproject.org/files/ENCFF290BIA/@@download/ENCFF290BIA.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF276XJH bed narrowPeak replicated peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF107DIH, ENCFF171IQH, ENCFF289NBH 1118733 ENCODE Processing Pipeline 886b618d0aed7fa6a996c899d3dfaf21 https://www.encodeproject.org/files/ENCFF276XJH/@@download/ENCFF276XJH.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF300AKQ bigBed narrowPeak replicated peaks ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF276XJH 2517118 ENCODE Processing Pipeline 8e7eb51acfe86fe4189ad3a833c0f39a https://www.encodeproject.org/files/ENCFF300AKQ/@@download/ENCFF300AKQ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF001KAV bam alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KBH 1235355821 Bing Ren, UCSD c3ac0915f7270c52a782b87e78d22ac9 https://www.encodeproject.org/files/ENCFF001KAV/@@download/ENCFF001KAV.bam mm9 archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KAX bigBed broadPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWH 492168 Bing Ren, UCSD 4b6b6fdda857350f824ec4138d17256f https://www.encodeproject.org/files/ENCFF001KAX/@@download/ENCFF001KAX.bigBed mm9 archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KAY bam alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KBL 1290013272 Bing Ren, UCSD ca09a34175d846061ac47b7c58ab14d0 https://www.encodeproject.org/files/ENCFF001KAY/@@download/ENCFF001KAY.bam mm9 archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KBB bigWig signal ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 69229279 Bing Ren, UCSD c87f763d33cb22d19717ecab7d5d4d07 https://www.encodeproject.org/files/ENCFF001KBB/@@download/ENCFF001KBB.bigWig mm9 archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KBH fastq reads ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1291573891 Bing Ren, UCSD eebd0ac2ea5ebc183391f0fcbc637bc4 https://www.encodeproject.org/files/ENCFF001KBH/@@download/ENCFF001KBH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCH/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KBL fastq reads ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1411281666 Bing Ren, UCSD 19bd3442adb509b5b1f247f4812926bb https://www.encodeproject.org/files/ENCFF001KBL/@@download/ENCFF001KBL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCI/ released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XWH bed broadPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 296238 Bing Ren, UCSD dee66a409f0ed39229ca02b0f6049df9 https://www.encodeproject.org/files/ENCFF001XWH/@@download/ENCFF001XWH.bed.gz mm9 archived mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF552RBV bam alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KBH, ENCFF018NEO 515452229 ENCODE Processing Pipeline 86d1cc14d0ae3356177353ba1f586307 https://www.encodeproject.org/files/ENCFF552RBV/@@download/ENCFF552RBV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF223AVT bam unfiltered alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KBH, ENCFF018NEO 1073500211 ENCODE Processing Pipeline 93e021464b5024e7f45d8897221058f5 https://www.encodeproject.org/files/ENCFF223AVT/@@download/ENCFF223AVT.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF856BNE bam alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KBL, ENCFF018NEO 388715974 ENCODE Processing Pipeline 882805e753066f6e89bca55af0a44c90 https://www.encodeproject.org/files/ENCFF856BNE/@@download/ENCFF856BNE.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF424MBB bam unfiltered alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KBL, ENCFF018NEO 1208955173 ENCODE Processing Pipeline 1d627adc8bbd31f6be0f746e05302e43 https://www.encodeproject.org/files/ENCFF424MBB/@@download/ENCFF424MBB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF834EBI bed narrowPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF260OJF, ENCFF856BNE 954320 ENCODE Processing Pipeline 39198cea7a49fa8aa851a8434bd3a6bf https://www.encodeproject.org/files/ENCFF834EBI/@@download/ENCFF834EBI.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF900GUW bigWig signal p-value ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF020THJ, ENCFF552RBV 265766031 ENCODE Processing Pipeline c78e0845f6e8191a1c613efa080fc21f https://www.encodeproject.org/files/ENCFF900GUW/@@download/ENCFF900GUW.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF852OFZ bigWig fold change over control ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF260OJF, ENCFF856BNE 192714255 ENCODE Processing Pipeline ac5631b60954248b7cb14675c19906ca https://www.encodeproject.org/files/ENCFF852OFZ/@@download/ENCFF852OFZ.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF615QXB bed narrowPeak replicated peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017PJT, ENCFF834EBI, ENCFF975QFC 1049595 ENCODE Processing Pipeline 9fc605f2ff7fdff560524cbaa68c14fb https://www.encodeproject.org/files/ENCFF615QXB/@@download/ENCFF615QXB.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF017PJT bed narrowPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF020THJ, ENCFF552RBV 1163593 ENCODE Processing Pipeline 54dcd52a98f0cd647879cd51bd5ec3dc https://www.encodeproject.org/files/ENCFF017PJT/@@download/ENCFF017PJT.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF975QFC bed narrowPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF020THJ, ENCFF260OJF, ENCFF552RBV, ENCFF856BNE 1170286 ENCODE Processing Pipeline ecf9deb2eb34945254aaf667497c4ad9 https://www.encodeproject.org/files/ENCFF975QFC/@@download/ENCFF975QFC.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF260HLJ bigBed narrowPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF834EBI 2686972 ENCODE Processing Pipeline 1e3ccf4ad09294c80504867b48c303b6 https://www.encodeproject.org/files/ENCFF260HLJ/@@download/ENCFF260HLJ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF446BYE bigBed narrowPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF975QFC 3212665 ENCODE Processing Pipeline 1e20cd1d49a2e49d611c6fa86212c48c https://www.encodeproject.org/files/ENCFF446BYE/@@download/ENCFF446BYE.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF250LUT bigWig fold change over control ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF020THJ, ENCFF260OJF, ENCFF552RBV, ENCFF856BNE 514651746 ENCODE Processing Pipeline f30f99e192cde52005163b56266558e4 https://www.encodeproject.org/files/ENCFF250LUT/@@download/ENCFF250LUT.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF323JZZ bigBed narrowPeak peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF017PJT 3372943 ENCODE Processing Pipeline f5864752443750681aca5cd78dfae862 https://www.encodeproject.org/files/ENCFF323JZZ/@@download/ENCFF323JZZ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF013BIW bigWig signal p-value ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF260OJF, ENCFF856BNE 286348968 ENCODE Processing Pipeline 39b2c7e691951d1513a66bef312f982a https://www.encodeproject.org/files/ENCFF013BIW/@@download/ENCFF013BIW.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF217MAR bigWig signal p-value ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF020THJ, ENCFF260OJF, ENCFF552RBV, ENCFF856BNE 477450896 ENCODE Processing Pipeline 5ef89c9fa6cdb42a662ce4144cb2a627 https://www.encodeproject.org/files/ENCFF217MAR/@@download/ENCFF217MAR.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF673XZS bigWig fold change over control ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF020THJ, ENCFF552RBV 257689353 ENCODE Processing Pipeline 729a49e87533454c3765616322ac0c1f https://www.encodeproject.org/files/ENCFF673XZS/@@download/ENCFF673XZS.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF296KFZ bigBed narrowPeak replicated peaks ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF615QXB 2135382 ENCODE Processing Pipeline d7d69fed7bdf97025290004a72478477 https://www.encodeproject.org/files/ENCFF296KFZ/@@download/ENCFF296KFZ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF002AOQ fastq reads ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1034277378 Bing Ren, UCSD 8f11e5ed3d61f4d61efd6f1203a35d54 SRA:SRR3651785 https://www.encodeproject.org/files/ENCFF002AOQ/@@download/ENCFF002AOQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQN/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF002AOS fastq reads ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1062683948 Bing Ren, UCSD e1a2deeda5f3c6a5d929fa6ccab8da86 SRA:SRR3651784 https://www.encodeproject.org/files/ENCFF002AOS/@@download/ENCFF002AOS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF333LWI bam alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOS, ENCFF806TVZ 775591710 ENCODE Processing Pipeline 67af994cba391be1a99ba7aabf7bec73 https://www.encodeproject.org/files/ENCFF333LWI/@@download/ENCFF333LWI.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF334FTS fastq reads ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 220745415 Bing Ren, UCSD e7fbd52cce07acb6ac86c6f32a14a74d SRA:SRR3651786 https://www.encodeproject.org/files/ENCFF334FTS/@@download/ENCFF334FTS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQN/ released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, inconsistent control read length, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF921RWN bam alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOQ, ENCFF334FTS, ENCFF806TVZ 508934157 ENCODE Processing Pipeline 9ef4b3e4ae7b3fc79b36fd622caa97be https://www.encodeproject.org/files/ENCFF921RWN/@@download/ENCFF921RWN.bam mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF865BYY bed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF576KAS, ENCFF921RWN 1009129 ENCODE Processing Pipeline d269b18aabd1b0293e84055c7fb2e45c https://www.encodeproject.org/files/ENCFF865BYY/@@download/ENCFF865BYY.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF459IEE bed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF333LWI, ENCFF362MXD, ENCFF576KAS, ENCFF921RWN 795491 ENCODE Processing Pipeline 30464cbe155ef51463bd3ac8d823c228 https://www.encodeproject.org/files/ENCFF459IEE/@@download/ENCFF459IEE.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF462JZO bigBed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF865BYY 2555635 ENCODE Processing Pipeline b04911c970acdf4f2016268121f85104 https://www.encodeproject.org/files/ENCFF462JZO/@@download/ENCFF462JZO.bigBed mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF493JCD bed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF333LWI, ENCFF362MXD 637467 ENCODE Processing Pipeline f90e4cad872ae9db17f4010e0a6e08dc https://www.encodeproject.org/files/ENCFF493JCD/@@download/ENCFF493JCD.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF450GBA bigBed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF459IEE 2037244 ENCODE Processing Pipeline 109a51223e4dbcc00a95bd52e2137689 https://www.encodeproject.org/files/ENCFF450GBA/@@download/ENCFF450GBA.bigBed mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF505LJI bigWig signal p-value ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF333LWI, ENCFF362MXD, ENCFF576KAS, ENCFF921RWN 569215322 ENCODE Processing Pipeline 18cb662c24593b306a0a7b01a23ce994 https://www.encodeproject.org/files/ENCFF505LJI/@@download/ENCFF505LJI.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF639SQW bigWig signal p-value ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF576KAS, ENCFF921RWN 258058971 ENCODE Processing Pipeline a2836285cd855daa6326da475a59a90c https://www.encodeproject.org/files/ENCFF639SQW/@@download/ENCFF639SQW.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF749FRR bigWig fold change over control ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF333LWI, ENCFF362MXD, ENCFF576KAS, ENCFF921RWN 536672602 ENCODE Processing Pipeline 41508b02991101ceda220f948146db51 https://www.encodeproject.org/files/ENCFF749FRR/@@download/ENCFF749FRR.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF288CCP bigWig fold change over control ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF576KAS, ENCFF921RWN 214849250 ENCODE Processing Pipeline 30ad8996a19fc2963ebc2055c5a28527 https://www.encodeproject.org/files/ENCFF288CCP/@@download/ENCFF288CCP.bigWig mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF337WIB bigBed narrowPeak replicated peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF715VTT 1283753 ENCODE Processing Pipeline 8110c7086314d0fb3276619c681db691 https://www.encodeproject.org/files/ENCFF337WIB/@@download/ENCFF337WIB.bigBed mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF715VTT bed narrowPeak replicated peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF459IEE, ENCFF493JCD, ENCFF865BYY 458898 ENCODE Processing Pipeline 7611d6d4580dbe3e88320bf77f6a12d9 https://www.encodeproject.org/files/ENCFF715VTT/@@download/ENCFF715VTT.bed.gz mm10-minimal archived mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF066UCL bam unfiltered alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOQ, ENCFF018NEO, ENCFF334FTS 1208311225 ENCODE Processing Pipeline c3f741c2e02e95fa5a714518916d1b9c https://www.encodeproject.org/files/ENCFF066UCL/@@download/ENCFF066UCL.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF607BJN bam alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOQ, ENCFF018NEO, ENCFF334FTS 466478232 ENCODE Processing Pipeline b421ae1963a1caeadca76dc451bf5b2f https://www.encodeproject.org/files/ENCFF607BJN/@@download/ENCFF607BJN.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF401TBZ bam unfiltered alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOS, ENCFF018NEO 1159457863 ENCODE Processing Pipeline 50600ab5a8d90ab76b0a7d65fa8fc3a7 https://www.encodeproject.org/files/ENCFF401TBZ/@@download/ENCFF401TBZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF049OBF bam alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOS, ENCFF018NEO 775348629 ENCODE Processing Pipeline 1a23824b2983493b6d8f7b20f4685a6a https://www.encodeproject.org/files/ENCFF049OBF/@@download/ENCFF049OBF.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF919FKS bed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF607BJN 990597 ENCODE Processing Pipeline 269c864c15e2740c1355f0670a76c568 https://www.encodeproject.org/files/ENCFF919FKS/@@download/ENCFF919FKS.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF147SKC bigBed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF919FKS 2510053 ENCODE Processing Pipeline c1128e1e1767e6a0e452f93b43c94328 https://www.encodeproject.org/files/ENCFF147SKC/@@download/ENCFF147SKC.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF439SLO bigWig signal p-value ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF607BJN 266441851 ENCODE Processing Pipeline 987235616c156a4eab814f1803633bf0 https://www.encodeproject.org/files/ENCFF439SLO/@@download/ENCFF439SLO.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF444AWI bigWig fold change over control ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF607BJN 211135243 ENCODE Processing Pipeline 4ee85e16f2066729e6e3a033be73c9d0 https://www.encodeproject.org/files/ENCFF444AWI/@@download/ENCFF444AWI.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF150OIY bed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF049OBF, ENCFF255MPO 574136 ENCODE Processing Pipeline f427e2c608874145ca5ae11c5da7343a https://www.encodeproject.org/files/ENCFF150OIY/@@download/ENCFF150OIY.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF158LQQ bed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF049OBF, ENCFF255MPO, ENCFF304BRA, ENCFF607BJN 802958 ENCODE Processing Pipeline 24f59950be70abaa1742249c0a360b6f https://www.encodeproject.org/files/ENCFF158LQQ/@@download/ENCFF158LQQ.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF644HNE bigBed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF150OIY 1614718 ENCODE Processing Pipeline f5ca9f41e1fc68484030f0b59222b436 https://www.encodeproject.org/files/ENCFF644HNE/@@download/ENCFF644HNE.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF245OYL bigBed narrowPeak peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158LQQ 2055954 ENCODE Processing Pipeline 5b13fa3b27ad03b14485099258986772 https://www.encodeproject.org/files/ENCFF245OYL/@@download/ENCFF245OYL.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF314JMJ bigWig signal p-value ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF049OBF, ENCFF255MPO 376144416 ENCODE Processing Pipeline d061b44d81312f16b289a83293bc128e https://www.encodeproject.org/files/ENCFF314JMJ/@@download/ENCFF314JMJ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF233RUO bigWig signal p-value ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF049OBF, ENCFF255MPO, ENCFF304BRA, ENCFF607BJN 469464030 ENCODE Processing Pipeline ce28424d838a5a3aae8db7d9a44e9c0a https://www.encodeproject.org/files/ENCFF233RUO/@@download/ENCFF233RUO.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF613PHO bigWig fold change over control ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF049OBF, ENCFF255MPO, ENCFF304BRA, ENCFF607BJN 539462603 ENCODE Processing Pipeline b2d5828cfc3f60606d76fb474ad58c91 https://www.encodeproject.org/files/ENCFF613PHO/@@download/ENCFF613PHO.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF413WWI bigBed narrowPeak replicated peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF355FBI 1263079 ENCODE Processing Pipeline 584ffd3beb93349b84e22f217aebade4 https://www.encodeproject.org/files/ENCFF413WWI/@@download/ENCFF413WWI.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF308WEI bigWig fold change over control ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF049OBF, ENCFF255MPO 323114643 ENCODE Processing Pipeline 353f9ff0c174ca4b0ee0725e975282e0 https://www.encodeproject.org/files/ENCFF308WEI/@@download/ENCFF308WEI.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF355FBI bed narrowPeak replicated peaks ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF150OIY, ENCFF158LQQ, ENCFF919FKS 452962 ENCODE Processing Pipeline 9526318579c0749a111705ff58f9346c https://www.encodeproject.org/files/ENCFF355FBI/@@download/ENCFF355FBI.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF002DTF fastq reads ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 1 36 single-ended 650364370 Bing Ren, UCSD 7474b9be402b221fbce7b6c51c22b31f SRA:SRR3653175 https://www.encodeproject.org/files/ENCFF002DTF/@@download/ENCFF002DTF.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTG fastq reads ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 2 36 single-ended 590981312 Bing Ren, UCSD 0fb50bd3c11e1d441b5bc7bdd673e00f SRA:SRR3653176 https://www.encodeproject.org/files/ENCFF002DTG/@@download/ENCFF002DTG.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTH fastq reads ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 1 36 single-ended 660371336 Bing Ren, UCSD 171318cc3026cd78d0dfdcc2590aac98 SRA:SRR3653172 https://www.encodeproject.org/files/ENCFF002DTH/@@download/ENCFF002DTH.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTJ fastq reads ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 2 36 single-ended 603069861 Bing Ren, UCSD 988ae961c674162079970c3e7f3df106 SRA:SRR3653173 https://www.encodeproject.org/files/ENCFF002DTJ/@@download/ENCFF002DTJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF412LWV fastq reads ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 3 50 single-ended 1084703699 Bing Ren, UCSD ad3e95a89898182efd844f80a0d4f29f SRA:SRR3653174 https://www.encodeproject.org/files/ENCFF412LWV/@@download/ENCFF412LWV.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUZ/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF044YXS fastq reads ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 3 50 single-ended 988501566 Bing Ren, UCSD 452a04ac3764f75f4f29879cb4206395 SRA:SRR3653177 https://www.encodeproject.org/files/ENCFF044YXS/@@download/ENCFF044YXS.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVA/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF998RQJ bam alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF002DTF, ENCFF002DTG, ENCFF044YXS, ENCFF806TVZ 1204700123 ENCODE Processing Pipeline 6262671444a465435d698fe6cf0044b9 https://www.encodeproject.org/files/ENCFF998RQJ/@@download/ENCFF998RQJ.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF804XNE bam alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF002DTH, ENCFF002DTJ, ENCFF412LWV, ENCFF806TVZ 1305281872 ENCODE Processing Pipeline df26eaceacfefa37d0e7a0e2bcaaedfd https://www.encodeproject.org/files/ENCFF804XNE/@@download/ENCFF804XNE.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF055UIV bed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF223QEB, ENCFF804XNE, ENCFF976TWF 2710236 ENCODE Processing Pipeline 7adb2ef9a32873e96dde764540f8895e https://www.encodeproject.org/files/ENCFF055UIV/@@download/ENCFF055UIV.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF284KPG bed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF223QEB, ENCFF976TWF, ENCFF998RQJ 1436020 ENCODE Processing Pipeline 7365136807b2fd4b56b7550d4f6c7395 https://www.encodeproject.org/files/ENCFF284KPG/@@download/ENCFF284KPG.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF380ZNF bed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF223QEB, ENCFF804XNE, ENCFF976TWF, ENCFF998RQJ 1237743 ENCODE Processing Pipeline 55fef51804dd16008eeba6bfadc3c389 https://www.encodeproject.org/files/ENCFF380ZNF/@@download/ENCFF380ZNF.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF188PMH bigBed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF284KPG 3228435 ENCODE Processing Pipeline e2f98e4ba5efb6474c16947455ead43e https://www.encodeproject.org/files/ENCFF188PMH/@@download/ENCFF188PMH.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF902HVL bigBed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF055UIV 5038449 ENCODE Processing Pipeline 3946e8849cdc64240375647345600977 https://www.encodeproject.org/files/ENCFF902HVL/@@download/ENCFF902HVL.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF214XTJ bigBed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF380ZNF 2376898 ENCODE Processing Pipeline bb80210f4256f423b228f69742572232 https://www.encodeproject.org/files/ENCFF214XTJ/@@download/ENCFF214XTJ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF424JZG bigWig signal p-value ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF223QEB, ENCFF976TWF, ENCFF998RQJ 454471636 ENCODE Processing Pipeline 6ef0477ef29dba3361a7fa59e5fb434f https://www.encodeproject.org/files/ENCFF424JZG/@@download/ENCFF424JZG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF409KZC bigWig signal p-value ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF223QEB, ENCFF804XNE, ENCFF976TWF 530410371 ENCODE Processing Pipeline 37a54f822a3dc0531a4ba2481658e7cc https://www.encodeproject.org/files/ENCFF409KZC/@@download/ENCFF409KZC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF077YHN bigWig signal p-value ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF223QEB, ENCFF804XNE, ENCFF976TWF, ENCFF998RQJ 501168236 ENCODE Processing Pipeline 76522006f7db565947d517c2c7ab9044 https://www.encodeproject.org/files/ENCFF077YHN/@@download/ENCFF077YHN.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF303KZC bigWig fold change over control ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF223QEB, ENCFF976TWF, ENCFF998RQJ 447765717 ENCODE Processing Pipeline 96cb8925de0aae96f56f08112a51c6b6 https://www.encodeproject.org/files/ENCFF303KZC/@@download/ENCFF303KZC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF438OJP bigWig fold change over control ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF223QEB, ENCFF804XNE, ENCFF976TWF 463191662 ENCODE Processing Pipeline c6f410951de15f18cc5022758841151c https://www.encodeproject.org/files/ENCFF438OJP/@@download/ENCFF438OJP.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF765BGN bigWig fold change over control ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF223QEB, ENCFF804XNE, ENCFF976TWF, ENCFF998RQJ 743057886 ENCODE Processing Pipeline 2a37e1a860aeafba93ce42cefd0db431 https://www.encodeproject.org/files/ENCFF765BGN/@@download/ENCFF765BGN.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF588RNN bed narrowPeak replicated peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF055UIV, ENCFF284KPG, ENCFF380ZNF 1154526 ENCODE Processing Pipeline 0d27772908e654e783e8781811f906c8 https://www.encodeproject.org/files/ENCFF588RNN/@@download/ENCFF588RNN.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF817ZEI bigBed narrowPeak replicated peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF588RNN 1991414 ENCODE Processing Pipeline 45049ae447b1e95119ee2719081fcf2c https://www.encodeproject.org/files/ENCFF817ZEI/@@download/ENCFF817ZEI.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF029OPF bam unfiltered alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DTH, ENCFF002DTJ, ENCFF018NEO, ENCFF412LWV 2570400112 ENCODE Processing Pipeline 87caa4301b919b4d284b1bc739a1b366 https://www.encodeproject.org/files/ENCFF029OPF/@@download/ENCFF029OPF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF669TSU bam unfiltered alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTF, ENCFF002DTG, ENCFF018NEO, ENCFF044YXS 2451396911 ENCODE Processing Pipeline b755943a659af76c1d9bc4e855868046 https://www.encodeproject.org/files/ENCFF669TSU/@@download/ENCFF669TSU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF980DPR bam alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DTH, ENCFF002DTJ, ENCFF018NEO, ENCFF412LWV 1121617620 ENCODE Processing Pipeline 5e95b99fe68ff6be0c460e341f6730f5 https://www.encodeproject.org/files/ENCFF980DPR/@@download/ENCFF980DPR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF124DZZ bam alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTF, ENCFF002DTG, ENCFF018NEO, ENCFF044YXS 1036030430 ENCODE Processing Pipeline 0d3300b5fee722d6bb403dad7f447b77 https://www.encodeproject.org/files/ENCFF124DZZ/@@download/ENCFF124DZZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF932IIV bed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF124DZZ, ENCFF563TGK, ENCFF903TSE 1369117 ENCODE Processing Pipeline 00264044eb4087fd6c4abb3a3b5dd506 https://www.encodeproject.org/files/ENCFF932IIV/@@download/ENCFF932IIV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF610YKV bed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF563TGK, ENCFF903TSE, ENCFF980DPR 2678177 ENCODE Processing Pipeline f80c7247c463d147287e7a6e44856950 https://www.encodeproject.org/files/ENCFF610YKV/@@download/ENCFF610YKV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF105ICZ bed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF124DZZ, ENCFF563TGK, ENCFF903TSE, ENCFF980DPR 1219243 ENCODE Processing Pipeline a5600b5848fac7967e68453345fdfda6 https://www.encodeproject.org/files/ENCFF105ICZ/@@download/ENCFF105ICZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF108OAT bigBed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF932IIV 3102759 ENCODE Processing Pipeline 2c0a68c20a0f922fe0c0b79bcdd21236 https://www.encodeproject.org/files/ENCFF108OAT/@@download/ENCFF108OAT.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF828KUY bigBed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF610YKV 4987739 ENCODE Processing Pipeline 47bf4f575a126914ff57d16abefea745 https://www.encodeproject.org/files/ENCFF828KUY/@@download/ENCFF828KUY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF923SVF bigBed narrowPeak peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF105ICZ 2345088 ENCODE Processing Pipeline d6237c2e9eedef483137b9c01a823d37 https://www.encodeproject.org/files/ENCFF923SVF/@@download/ENCFF923SVF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF336WIR bigWig signal p-value ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF124DZZ, ENCFF563TGK, ENCFF903TSE 439301449 ENCODE Processing Pipeline 10b8e5938880b3c25075df4ec516a402 https://www.encodeproject.org/files/ENCFF336WIR/@@download/ENCFF336WIR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF869MQE bigWig signal p-value ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF563TGK, ENCFF903TSE, ENCFF980DPR 515102224 ENCODE Processing Pipeline 6ffb2337d40b90ad3a246d0818dd221c https://www.encodeproject.org/files/ENCFF869MQE/@@download/ENCFF869MQE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF294XPQ bigWig signal p-value ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF124DZZ, ENCFF563TGK, ENCFF903TSE, ENCFF980DPR 506939294 ENCODE Processing Pipeline 421178646b8dcb0bf7b846fcd6d343f9 https://www.encodeproject.org/files/ENCFF294XPQ/@@download/ENCFF294XPQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF597JDD bigWig fold change over control ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 ENCFF124DZZ, ENCFF563TGK, ENCFF903TSE 435907579 ENCODE Processing Pipeline ca2bb9926fb1eb3c2f157a38ef4f452c https://www.encodeproject.org/files/ENCFF597JDD/@@download/ENCFF597JDD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF038AER bigWig fold change over control ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 ENCFF563TGK, ENCFF903TSE, ENCFF980DPR 455304165 ENCODE Processing Pipeline a4633bc0f4ba8924b368e693e1d5505d https://www.encodeproject.org/files/ENCFF038AER/@@download/ENCFF038AER.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF923CRK bigWig fold change over control ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF124DZZ, ENCFF563TGK, ENCFF903TSE, ENCFF980DPR 736101192 ENCODE Processing Pipeline 4a522dad0e46e7a574c978ddbf0527ec https://www.encodeproject.org/files/ENCFF923CRK/@@download/ENCFF923CRK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF168TSU bed narrowPeak replicated peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF105ICZ, ENCFF610YKV, ENCFF932IIV 1139994 ENCODE Processing Pipeline 9215bd45fccd54c8b67df6c560524108 https://www.encodeproject.org/files/ENCFF168TSU/@@download/ENCFF168TSU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF087VKH bigBed narrowPeak replicated peaks ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1, 2 ENCFF168TSU 1970829 ENCODE Processing Pipeline d7a8937a5d25b11f1c687a42a7aaed13 https://www.encodeproject.org/files/ENCFF087VKH/@@download/ENCFF087VKH.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AFA fastq reads ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1186986147 Bing Ren, UCSD 4f014906a48e50c37241a2ca6b12e88a SRA:SRR3651680 https://www.encodeproject.org/files/ENCFF002AFA/@@download/ENCFF002AFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002AFB fastq reads ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1204697634 Bing Ren, UCSD e6f80bd16ada57a28912d5d4358158c4 SRA:SRR3651681 https://www.encodeproject.org/files/ENCFF002AFB/@@download/ENCFF002AFB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQM/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF460RNI bam alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFA, ENCFF806TVZ 776756388 ENCODE Processing Pipeline c707ff6bb656382d6f1c50826e6a3faa https://www.encodeproject.org/files/ENCFF460RNI/@@download/ENCFF460RNI.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF721BIS bam alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFB, ENCFF806TVZ 851263542 ENCODE Processing Pipeline e25c91ea7c7c4e86e8b8fca577f8eb70 https://www.encodeproject.org/files/ENCFF721BIS/@@download/ENCFF721BIS.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF469ROX bigBed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF251TJP 3502943 ENCODE Processing Pipeline 0c4627ebcd49f48c83b7686d0de757a1 https://www.encodeproject.org/files/ENCFF469ROX/@@download/ENCFF469ROX.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF438BND bigBed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF500BXT 3162080 ENCODE Processing Pipeline c71df822f42af3d4f5029364f18ba3b0 https://www.encodeproject.org/files/ENCFF438BND/@@download/ENCFF438BND.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF251TJP bed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF460RNI, ENCFF988JQL 1461878 ENCODE Processing Pipeline 1a3cf7ed1ee1730825fe03790a176861 https://www.encodeproject.org/files/ENCFF251TJP/@@download/ENCFF251TJP.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF500BXT bed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF721BIS, ENCFF790TLG 1341876 ENCODE Processing Pipeline dc237da2d40bd0c53dee10ac913d0ee2 https://www.encodeproject.org/files/ENCFF500BXT/@@download/ENCFF500BXT.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF538WNJ bed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF460RNI, ENCFF721BIS, ENCFF790TLG, ENCFF988JQL 1625918 ENCODE Processing Pipeline d42509f2b2277c9588b937e7cfb732e7 https://www.encodeproject.org/files/ENCFF538WNJ/@@download/ENCFF538WNJ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF806PIO bigBed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF538WNJ 4734153 ENCODE Processing Pipeline ab2069b87181bdab3d11408f5fa2763d https://www.encodeproject.org/files/ENCFF806PIO/@@download/ENCFF806PIO.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF597ORK bigWig signal p-value ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF460RNI, ENCFF988JQL 363845418 ENCODE Processing Pipeline 777cfc98e7bbba96075c3f9bdf3ba94e https://www.encodeproject.org/files/ENCFF597ORK/@@download/ENCFF597ORK.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF214UIK bigWig signal p-value ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF721BIS, ENCFF790TLG 360752654 ENCODE Processing Pipeline fe2e32866f9756d6d98d0f78418b392c https://www.encodeproject.org/files/ENCFF214UIK/@@download/ENCFF214UIK.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF813RBR bigWig signal p-value ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF460RNI, ENCFF721BIS, ENCFF790TLG, ENCFF988JQL 615893347 ENCODE Processing Pipeline 3e745b15d63a13855ba95708108ff6ea https://www.encodeproject.org/files/ENCFF813RBR/@@download/ENCFF813RBR.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF884FWO bigWig fold change over control ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF460RNI, ENCFF988JQL 349384016 ENCODE Processing Pipeline 0da228966835dd734d4671799bcfbb11 https://www.encodeproject.org/files/ENCFF884FWO/@@download/ENCFF884FWO.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF627AWN bigWig fold change over control ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF721BIS, ENCFF790TLG 352447968 ENCODE Processing Pipeline fcc9be94a5f7389f9e9e2754771607bc https://www.encodeproject.org/files/ENCFF627AWN/@@download/ENCFF627AWN.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF593JIV bigWig fold change over control ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF460RNI, ENCFF721BIS, ENCFF790TLG, ENCFF988JQL 735750518 ENCODE Processing Pipeline ae1229c6b1dcf9d1c04711eed53d590d https://www.encodeproject.org/files/ENCFF593JIV/@@download/ENCFF593JIV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF058VIL bed narrowPeak replicated peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF251TJP, ENCFF500BXT, ENCFF538WNJ 1172853 ENCODE Processing Pipeline 7fca1f89d07a34fb50d0e60af16da0d3 https://www.encodeproject.org/files/ENCFF058VIL/@@download/ENCFF058VIL.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF101CRA bigBed narrowPeak replicated peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF058VIL 2784533 ENCODE Processing Pipeline 7d9363e35e0757fcc6ceda0eda0aad59 https://www.encodeproject.org/files/ENCFF101CRA/@@download/ENCFF101CRA.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF886SOA bam unfiltered alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFB, ENCFF018NEO 1360506760 ENCODE Processing Pipeline 525f0a7d2f8da1fe446b3b1572579565 https://www.encodeproject.org/files/ENCFF886SOA/@@download/ENCFF886SOA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF562HEX bam unfiltered alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFA, ENCFF018NEO 1325867698 ENCODE Processing Pipeline 7866c8baf073bbf7cab2b1058f49759c https://www.encodeproject.org/files/ENCFF562HEX/@@download/ENCFF562HEX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF174ZKG bam alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFB, ENCFF018NEO 851123534 ENCODE Processing Pipeline 6d8f80eac6b977704d4f285224f7afa0 https://www.encodeproject.org/files/ENCFF174ZKG/@@download/ENCFF174ZKG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF104MNP bam alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFA, ENCFF018NEO 776595733 ENCODE Processing Pipeline 364d306857625c417f7acbfaf300cc65 https://www.encodeproject.org/files/ENCFF104MNP/@@download/ENCFF104MNP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF357OSH bed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF174ZKG, ENCFF621MOH 1342123 ENCODE Processing Pipeline 3d530655cf86f2ddf575723a3b8b1157 https://www.encodeproject.org/files/ENCFF357OSH/@@download/ENCFF357OSH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF721OGK bed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF104MNP, ENCFF568CQH 1462108 ENCODE Processing Pipeline 30d87810d3ccccc5657c46ad96a4cb98 https://www.encodeproject.org/files/ENCFF721OGK/@@download/ENCFF721OGK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF568PIB bed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF104MNP, ENCFF174ZKG, ENCFF568CQH, ENCFF621MOH 1630115 ENCODE Processing Pipeline e984fa1c48e87bf92da5ea1123621d1c https://www.encodeproject.org/files/ENCFF568PIB/@@download/ENCFF568PIB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF785UMP bigBed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF721OGK 3506994 ENCODE Processing Pipeline d9ae3c910805a9a339071d9fdca747e9 https://www.encodeproject.org/files/ENCFF785UMP/@@download/ENCFF785UMP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF992UXU bigBed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF357OSH 3163977 ENCODE Processing Pipeline e10cadf25e6350f81cbc9e2e50b9bef7 https://www.encodeproject.org/files/ENCFF992UXU/@@download/ENCFF992UXU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF098LFF bigBed narrowPeak peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF568PIB 4722500 ENCODE Processing Pipeline f3178cc01374a204f11d3a895689bcaf https://www.encodeproject.org/files/ENCFF098LFF/@@download/ENCFF098LFF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF036LPA bigWig signal p-value ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF104MNP, ENCFF568CQH 399371068 ENCODE Processing Pipeline 778db5e6ddc22345de42097d43164db5 https://www.encodeproject.org/files/ENCFF036LPA/@@download/ENCFF036LPA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF610UWL bigWig signal p-value ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF174ZKG, ENCFF621MOH 368761365 ENCODE Processing Pipeline 98bb3275b03c65e942d8ae1b2424c075 https://www.encodeproject.org/files/ENCFF610UWL/@@download/ENCFF610UWL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF345YJO bigWig signal p-value ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF104MNP, ENCFF174ZKG, ENCFF568CQH, ENCFF621MOH 674566269 ENCODE Processing Pipeline 972adc25e99288c52fb894d2e768cdd2 https://www.encodeproject.org/files/ENCFF345YJO/@@download/ENCFF345YJO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF475KAY bigWig fold change over control ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF104MNP, ENCFF568CQH 358638746 ENCODE Processing Pipeline 44a0687e151a1fd0a47f5b2548025835 https://www.encodeproject.org/files/ENCFF475KAY/@@download/ENCFF475KAY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF380BUR bigWig fold change over control ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF174ZKG, ENCFF621MOH 350790954 ENCODE Processing Pipeline 0a107e7d9ae1c5274664b2169ed5a895 https://www.encodeproject.org/files/ENCFF380BUR/@@download/ENCFF380BUR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF900XUW bigWig fold change over control ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF104MNP, ENCFF174ZKG, ENCFF568CQH, ENCFF621MOH 685460133 ENCODE Processing Pipeline 7b1160cc63bf54024fd25a0596a4aa2f https://www.encodeproject.org/files/ENCFF900XUW/@@download/ENCFF900XUW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF291VFI bed narrowPeak replicated peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF357OSH, ENCFF568PIB, ENCFF721OGK 1125746 ENCODE Processing Pipeline e6f45cc60afbf761e4fb2c3914b1bac9 https://www.encodeproject.org/files/ENCFF291VFI/@@download/ENCFF291VFI.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF401UCZ bigBed narrowPeak replicated peaks ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF291VFI 2695297 ENCODE Processing Pipeline 5167d3e58e5e634bf77b49f55f439f37 https://www.encodeproject.org/files/ENCFF401UCZ/@@download/ENCFF401UCZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001KOG bam alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KOQ 201665231 Bing Ren, UCSD 87754cafb857042daf127a47efa42a3e https://www.encodeproject.org/files/ENCFF001KOG/@@download/ENCFF001KOG.bam mm9 released low read length insufficient read depth extremely low read depth ENCFF001KOI bam alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KOV 424009529 Bing Ren, UCSD 307c7ea1303bb7b43fcc055b00b441df https://www.encodeproject.org/files/ENCFF001KOI/@@download/ENCFF001KOI.bam mm9 released low read length insufficient read depth extremely low read depth ENCFF001KOK bigWig signal ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001KOG, ENCFF001KOI 62608065 Bing Ren, UCSD 1b28655df25cce5b85da2956e9aa5d42 https://www.encodeproject.org/files/ENCFF001KOK/@@download/ENCFF001KOK.bigWig mm9 released low read length insufficient read depth extremely low read depth ENCFF001KOQ fastq reads ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 251270116 Bing Ren, UCSD 161ee16495966d1979ad7fd6fa033327 https://www.encodeproject.org/files/ENCFF001KOQ/@@download/ENCFF001KOQ.fastq.gz Illumina Genome Analyzer II released low read length insufficient read depth extremely low read depth ENCFF001KOV fastq reads ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 830766634 Bing Ren, UCSD 2170eea01e7a6e5f4c27226a2ab219a5 https://www.encodeproject.org/files/ENCFF001KOV/@@download/ENCFF001KOV.fastq.gz Illumina Genome Analyzer II released low read length insufficient read depth extremely low read depth ENCFF207RUK bam unfiltered alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001KOV, ENCFF806TVZ 922202399 J. Michael Cherry, Stanford c978b6454e2e42d8dd942b324f6e9a80 https://www.encodeproject.org/files/ENCFF207RUK/@@download/ENCFF207RUK.bam mm10-minimal archived low read length insufficient read depth extremely low read depth ENCFF227VTU bam unfiltered alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001KOQ, ENCFF806TVZ 287765546 J. Michael Cherry, Stanford c76ca87b6d1d87c50ba8b7050a053a92 https://www.encodeproject.org/files/ENCFF227VTU/@@download/ENCFF227VTU.bam mm10-minimal archived low read length insufficient read depth extremely low read depth ENCFF738EUE bam alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KOV, ENCFF018NEO 401102631 ENCODE Processing Pipeline e1a6ab7b831ac28b59410be9194fae79 https://www.encodeproject.org/files/ENCFF738EUE/@@download/ENCFF738EUE.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF493MBH bam alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KOQ, ENCFF018NEO 151970389 ENCODE Processing Pipeline f96c679a16e441358d25ab34e52fd237 https://www.encodeproject.org/files/ENCFF493MBH/@@download/ENCFF493MBH.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF745QLK bam unfiltered alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KOQ, ENCFF018NEO 288061259 ENCODE Processing Pipeline 365c97b5d6ecb63b6aa5609e7fc0729b https://www.encodeproject.org/files/ENCFF745QLK/@@download/ENCFF745QLK.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF313PAJ bam unfiltered alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KOV, ENCFF018NEO 923501847 ENCODE Processing Pipeline 693749137672c45da1262ae505bfb6ce https://www.encodeproject.org/files/ENCFF313PAJ/@@download/ENCFF313PAJ.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF524JOX fastq reads ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3479306425 Bing Ren, UCSD f4a9e6dd13a97fb2aaa60b70e61f9f69 SRA:SRR3651456 https://www.encodeproject.org/files/ENCFF524JOX/@@download/ENCFF524JOX.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released inconsistent platforms ENCFF632UDQ fastq reads ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 3358784910 Bing Ren, UCSD db6568c6c99a1fbc5cb4bee3b342efe2 SRA:SRR3651457 https://www.encodeproject.org/files/ENCFF632UDQ/@@download/ENCFF632UDQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released inconsistent platforms ENCFF415HZG bam alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF524JOX, ENCFF806TVZ 3017623053 ENCODE Processing Pipeline b043a440c997079329a7605fb2494362 https://www.encodeproject.org/files/ENCFF415HZG/@@download/ENCFF415HZG.bam mm10-minimal archived inconsistent platforms ENCFF232BPO bam alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF632UDQ, ENCFF806TVZ 2924314226 ENCODE Processing Pipeline 02984ff90e9c9ea61437284585cc51c4 https://www.encodeproject.org/files/ENCFF232BPO/@@download/ENCFF232BPO.bam mm10-minimal archived inconsistent platforms ENCFF532NBF bigBed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF150BQX 7742814 ENCODE Processing Pipeline cd7d36ea920a8b30634491fc05ed910c https://www.encodeproject.org/files/ENCFF532NBF/@@download/ENCFF532NBF.bigBed mm10-minimal archived inconsistent platforms ENCFF222YFH bed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF415HZG, ENCFF881FJP 2627510 ENCODE Processing Pipeline a2e8219ecbecfcc69bd778af222739f8 https://www.encodeproject.org/files/ENCFF222YFH/@@download/ENCFF222YFH.bed.gz mm10-minimal archived inconsistent platforms ENCFF421RKQ bed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF232BPO, ENCFF415HZG, ENCFF881FJP 3149488 ENCODE Processing Pipeline 9f5e655f7c5e79cb0479bcb1005636da https://www.encodeproject.org/files/ENCFF421RKQ/@@download/ENCFF421RKQ.bed.gz mm10-minimal archived inconsistent platforms ENCFF150BQX bed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF232BPO, ENCFF881FJP 3091786 ENCODE Processing Pipeline e574a8291559f09b8cb910a807e7aa21 https://www.encodeproject.org/files/ENCFF150BQX/@@download/ENCFF150BQX.bed.gz mm10-minimal archived inconsistent platforms ENCFF463GMN bigBed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF222YFH 6594660 ENCODE Processing Pipeline 0e92ab93bbd52ddd892edb2b3938704f https://www.encodeproject.org/files/ENCFF463GMN/@@download/ENCFF463GMN.bigBed mm10-minimal archived inconsistent platforms ENCFF033XGQ bigBed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF421RKQ 7704396 ENCODE Processing Pipeline f26de44f13211d033fce25c20d282322 https://www.encodeproject.org/files/ENCFF033XGQ/@@download/ENCFF033XGQ.bigBed mm10-minimal archived inconsistent platforms ENCFF090VDG bigWig signal p-value ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF232BPO, ENCFF881FJP 1167813145 ENCODE Processing Pipeline e54a8828918831b9502f11905dea0453 https://www.encodeproject.org/files/ENCFF090VDG/@@download/ENCFF090VDG.bigWig mm10-minimal archived inconsistent platforms ENCFF125LKX bigWig signal p-value ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF415HZG, ENCFF881FJP 1071029965 ENCODE Processing Pipeline a3a7fd6404f80ee488ca749d6ad59645 https://www.encodeproject.org/files/ENCFF125LKX/@@download/ENCFF125LKX.bigWig mm10-minimal archived inconsistent platforms ENCFF233DSH bigWig signal p-value ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF232BPO, ENCFF415HZG, ENCFF881FJP 1346723859 ENCODE Processing Pipeline c9817abbdd5ac1143f7f84474db6caf6 https://www.encodeproject.org/files/ENCFF233DSH/@@download/ENCFF233DSH.bigWig mm10-minimal archived inconsistent platforms ENCFF400TOM bigWig fold change over control ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF415HZG, ENCFF881FJP 1212190297 ENCODE Processing Pipeline 1028e96b19856aefc0f6d70b17375466 https://www.encodeproject.org/files/ENCFF400TOM/@@download/ENCFF400TOM.bigWig mm10-minimal archived inconsistent platforms ENCFF471NVB bigWig fold change over control ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF081EMS, ENCFF232BPO, ENCFF881FJP 1246548241 ENCODE Processing Pipeline da3a00a008b066dd0a2f7bc99ad18df4 https://www.encodeproject.org/files/ENCFF471NVB/@@download/ENCFF471NVB.bigWig mm10-minimal archived inconsistent platforms ENCFF566YDE bigWig fold change over control ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF081EMS, ENCFF232BPO, ENCFF415HZG, ENCFF881FJP 1695935475 ENCODE Processing Pipeline 0504d64e17996b8c778354ff4087a1c9 https://www.encodeproject.org/files/ENCFF566YDE/@@download/ENCFF566YDE.bigWig mm10-minimal archived inconsistent platforms ENCFF336AJJ bed narrowPeak replicated peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF150BQX, ENCFF222YFH, ENCFF421RKQ 2507293 ENCODE Processing Pipeline c29c1c3b4ec2282ac7b282c7e2154b7f https://www.encodeproject.org/files/ENCFF336AJJ/@@download/ENCFF336AJJ.bed.gz mm10-minimal archived inconsistent platforms ENCFF503CMB bigBed narrowPeak replicated peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF336AJJ 4665354 ENCODE Processing Pipeline 029b3331ad9ee184c9a880d69583e415 https://www.encodeproject.org/files/ENCFF503CMB/@@download/ENCFF503CMB.bigBed mm10-minimal archived inconsistent platforms ENCFF150KSY bam unfiltered alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF524JOX 4136647009 ENCODE Processing Pipeline c63fc73428bc43aa465c1637d66d5d78 https://www.encodeproject.org/files/ENCFF150KSY/@@download/ENCFF150KSY.bam mm10 released inconsistent platforms ENCFF474LIO bam unfiltered alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF632UDQ 3986186293 ENCODE Processing Pipeline d3dc2e458c58825949b42fa83e53e18d https://www.encodeproject.org/files/ENCFF474LIO/@@download/ENCFF474LIO.bam mm10 released inconsistent platforms ENCFF783RDN bam alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF524JOX 3017023047 ENCODE Processing Pipeline e0b6643c5bd0ac6c1a4a1dce65789703 https://www.encodeproject.org/files/ENCFF783RDN/@@download/ENCFF783RDN.bam mm10 released inconsistent platforms ENCFF141HFI bam alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF632UDQ 2923722523 ENCODE Processing Pipeline 1f4f3ca938bc8b5259c9ca41184e3505 https://www.encodeproject.org/files/ENCFF141HFI/@@download/ENCFF141HFI.bam mm10 released inconsistent platforms ENCFF125UED bed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF141HFI, ENCFF209HPI, ENCFF634NAV, ENCFF783RDN 3340656 ENCODE Processing Pipeline 4bbe44007230627970bbf1a5beb4a6c5 https://www.encodeproject.org/files/ENCFF125UED/@@download/ENCFF125UED.bed.gz mm10 released inconsistent platforms ENCFF555KAP bigBed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF492XDP 6696707 ENCODE Processing Pipeline c2cc2729452648697651317177916655 https://www.encodeproject.org/files/ENCFF555KAP/@@download/ENCFF555KAP.bigBed mm10 released inconsistent platforms ENCFF105QTN bigBed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125UED 8161229 ENCODE Processing Pipeline 10f64a11a05c29612360bf6a2b4e5df2 https://www.encodeproject.org/files/ENCFF105QTN/@@download/ENCFF105QTN.bigBed mm10 released inconsistent platforms ENCFF492XDP bed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF783RDN 2670767 ENCODE Processing Pipeline da16b259459be6e5f5c1507c4ea9dea0 https://www.encodeproject.org/files/ENCFF492XDP/@@download/ENCFF492XDP.bed.gz mm10 released inconsistent platforms ENCFF714NAO bed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF141HFI, ENCFF209HPI, ENCFF634NAV 2793860 ENCODE Processing Pipeline 6331548ab5ce072005df743b3ae97b13 https://www.encodeproject.org/files/ENCFF714NAO/@@download/ENCFF714NAO.bed.gz mm10 released inconsistent platforms ENCFF053ESV bigBed narrowPeak peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF714NAO 7022320 ENCODE Processing Pipeline f2093ecfe65f6270f7b236176c1e1d96 https://www.encodeproject.org/files/ENCFF053ESV/@@download/ENCFF053ESV.bigBed mm10 released inconsistent platforms ENCFF017PRV bigWig signal p-value ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF783RDN 1152569087 ENCODE Processing Pipeline f71e5d933d953ffe1d02469901ec1ee8 https://www.encodeproject.org/files/ENCFF017PRV/@@download/ENCFF017PRV.bigWig mm10 released inconsistent platforms ENCFF575FHP bigWig signal p-value ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF141HFI, ENCFF209HPI, ENCFF634NAV 1030570369 ENCODE Processing Pipeline 2be108c7180b3b42daf9ffad5e9aa4bc https://www.encodeproject.org/files/ENCFF575FHP/@@download/ENCFF575FHP.bigWig mm10 released inconsistent platforms ENCFF989ZZP bigWig signal p-value ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF141HFI, ENCFF209HPI, ENCFF634NAV, ENCFF783RDN 1267930214 ENCODE Processing Pipeline 39ffbfb4d95a4e60ae0bfc3ed4bbd191 https://www.encodeproject.org/files/ENCFF989ZZP/@@download/ENCFF989ZZP.bigWig mm10 released inconsistent platforms ENCFF580UQC bigWig fold change over control ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF783RDN 1227626965 ENCODE Processing Pipeline 0bef236266201d2cccf1417cc8655edc https://www.encodeproject.org/files/ENCFF580UQC/@@download/ENCFF580UQC.bigWig mm10 released inconsistent platforms ENCFF725JJV bigWig fold change over control ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF141HFI, ENCFF209HPI, ENCFF634NAV 1259549255 ENCODE Processing Pipeline 2e6c5f23a1bcf323a462e9bb94791aea https://www.encodeproject.org/files/ENCFF725JJV/@@download/ENCFF725JJV.bigWig mm10 released inconsistent platforms ENCFF909TOQ bigWig fold change over control ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF141HFI, ENCFF209HPI, ENCFF634NAV, ENCFF783RDN 1736520800 ENCODE Processing Pipeline febbaf737370aa4c10f0f26f761d3242 https://www.encodeproject.org/files/ENCFF909TOQ/@@download/ENCFF909TOQ.bigWig mm10 released inconsistent platforms ENCFF938YRV bed narrowPeak replicated peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF125UED, ENCFF492XDP, ENCFF714NAO 2512748 ENCODE Processing Pipeline e9f67fbfb034fc8e6497073aa40cb0d3 https://www.encodeproject.org/files/ENCFF938YRV/@@download/ENCFF938YRV.bed.gz mm10 released inconsistent platforms ENCFF945TYX bigBed narrowPeak replicated peaks ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF938YRV 4656450 ENCODE Processing Pipeline b88b534ad64638578dafef3e8e31bb07 https://www.encodeproject.org/files/ENCFF945TYX/@@download/ENCFF945TYX.bigBed mm10 released inconsistent platforms ENCFF001ZYW fastq reads ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 1 1 48 single-ended 2596810377 Ross Hardison, PennState 4e82c7dc4034aa35cc50e7c12c49d2bd https://www.encodeproject.org/files/ENCFF001ZYW/@@download/ENCFF001ZYW.fastq.gz Illumina HiSeq 2000 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001ZYX fastq reads ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 2 1 48 single-ended 2251711860 Ross Hardison, PennState f034c648046c981f90c483290f5ac473 https://www.encodeproject.org/files/ENCFF001ZYX/@@download/ENCFF001ZYX.fastq.gz Illumina HiSeq 2000 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001ZYY bigWig signal ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 5185911577 Ross Hardison, PennState 76ddb09ebefb948c05290c29bd4d6f7f https://www.encodeproject.org/files/ENCFF001ZYY/@@download/ENCFF001ZYY.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001ZYZ bam alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 1 ENCFF001ZYW 2986725086 Ross Hardison, PennState a54945909f88efb70d1875f5115de4af https://www.encodeproject.org/files/ENCFF001ZYZ/@@download/ENCFF001ZYZ.bam mm9 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001ZZA bam alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 2 ENCFF001ZYX 2608849631 Ross Hardison, PennState 3b85b1071c0ccd99b7018ef2c2cae5ea https://www.encodeproject.org/files/ENCFF001ZZA/@@download/ENCFF001ZZA.bam mm9 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF001ZZB bam alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 5516558657 Ross Hardison, PennState dd64f5702f4227e01779aab987d17927 https://www.encodeproject.org/files/ENCFF001ZZB/@@download/ENCFF001ZZB.bam mm9 released low read length experiment not submitted to GEO, missing derived_from, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF406RYD bam unfiltered alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 1 ENCFF001ZYW, ENCFF806TVZ 3190802908 J. Michael Cherry, Stanford cea54a0143474c1d25823ed51386b58a https://www.encodeproject.org/files/ENCFF406RYD/@@download/ENCFF406RYD.bam mm10-minimal archived low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF643NLC bam unfiltered alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 2 ENCFF001ZYX, ENCFF806TVZ 2789776903 J. Michael Cherry, Stanford 68f2f9a15a6a1e90f3695b9fef8d103f https://www.encodeproject.org/files/ENCFF643NLC/@@download/ENCFF643NLC.bam mm10-minimal archived low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF090DCC bam unfiltered alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 1 48 ENCFF001ZYW, ENCFF018NEO 3193602677 ENCODE Processing Pipeline e7f4ea771049d6ebfdf59c6342d3b605 https://www.encodeproject.org/files/ENCFF090DCC/@@download/ENCFF090DCC.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF610QKF bam unfiltered alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 2 48 ENCFF001ZYX, ENCFF018NEO 2792006872 ENCODE Processing Pipeline 8de421a6297760514a10b317c1cd652a https://www.encodeproject.org/files/ENCFF610QKF/@@download/ENCFF610QKF.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF549GXA bam alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 2 48 ENCFF001ZYX, ENCFF018NEO 2019310409 ENCODE Processing Pipeline d985576890e50ebae482a8de5ad26cc0 https://www.encodeproject.org/files/ENCFF549GXA/@@download/ENCFF549GXA.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF717OFJ bam alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 1 48 ENCFF001ZYW, ENCFF018NEO 2276545938 ENCODE Processing Pipeline b10bada194172353504d29170b47175a https://www.encodeproject.org/files/ENCFF717OFJ/@@download/ENCFF717OFJ.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF174MKE fastq reads ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 751293534 Bing Ren, UCSD 8087a0ccde4436230206485b942991ec SRA:SRR3653206 https://www.encodeproject.org/files/ENCFF174MKE/@@download/ENCFF174MKE.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF275RQQ fastq reads ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 2639027410 Bing Ren, UCSD aaade7df7c8ca87443ae4192cbca5e44 SRA:SRR3653207 https://www.encodeproject.org/files/ENCFF275RQQ/@@download/ENCFF275RQQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF441BJJ/, /files/ENCFF824WNR/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF350EJC fastq reads ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1825248939 Bing Ren, UCSD 1cd0fa28480cddb62aab82f78634646a SRA:SRR3653205 https://www.encodeproject.org/files/ENCFF350EJC/@@download/ENCFF350EJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF636CUM/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF048XKK bam alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF174MKE, ENCFF275RQQ, ENCFF806TVZ 2405849088 ENCODE Processing Pipeline 672deb194c3d590fc5366e4b14493f2b https://www.encodeproject.org/files/ENCFF048XKK/@@download/ENCFF048XKK.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF250EQO bam alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF350EJC, ENCFF806TVZ 1532217167 ENCODE Processing Pipeline c02c9fe42a3ce55316ba0eec8fc1baa2 https://www.encodeproject.org/files/ENCFF250EQO/@@download/ENCFF250EQO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF824XPV bed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF250EQO, ENCFF881FJP 766611 ENCODE Processing Pipeline 39dc7ed1453e12197d22c827f690aa9d https://www.encodeproject.org/files/ENCFF824XPV/@@download/ENCFF824XPV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF507HTN bigBed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF084SIV 2677740 ENCODE Processing Pipeline 42fd341efea239b9a95cef3227acf0ac https://www.encodeproject.org/files/ENCFF507HTN/@@download/ENCFF507HTN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF307CCU bed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF048XKK, ENCFF081EMS, ENCFF250EQO, ENCFF881FJP 999712 ENCODE Processing Pipeline 1825503fcdbabc1d8f7421eab0207822 https://www.encodeproject.org/files/ENCFF307CCU/@@download/ENCFF307CCU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF150BHN bigBed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF824XPV 2295900 ENCODE Processing Pipeline c46a709c68047e923100476fab517386 https://www.encodeproject.org/files/ENCFF150BHN/@@download/ENCFF150BHN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF084SIV bed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF048XKK, ENCFF081EMS, ENCFF881FJP 1143481 ENCODE Processing Pipeline c543d9b03f3ba72b3b17cac6bf4bcb80 https://www.encodeproject.org/files/ENCFF084SIV/@@download/ENCFF084SIV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF993KPF bigBed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF307CCU 2781450 ENCODE Processing Pipeline 78a84fd4a25fe5120a2f52b647ae5ebc https://www.encodeproject.org/files/ENCFF993KPF/@@download/ENCFF993KPF.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF197MCA bigWig signal p-value ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF250EQO, ENCFF881FJP 710484987 ENCODE Processing Pipeline 81c632e74231be8ae0423e300c2f4844 https://www.encodeproject.org/files/ENCFF197MCA/@@download/ENCFF197MCA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF369YMG bigWig fold change over control ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF048XKK, ENCFF081EMS, ENCFF881FJP 1131035899 ENCODE Processing Pipeline 57ff6d3e4b8023702e7064e6d5d5745f https://www.encodeproject.org/files/ENCFF369YMG/@@download/ENCFF369YMG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF307MSP bigWig signal p-value ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF048XKK, ENCFF081EMS, ENCFF881FJP 1068555309 ENCODE Processing Pipeline ab03c873d807edc8ec29469c29876897 https://www.encodeproject.org/files/ENCFF307MSP/@@download/ENCFF307MSP.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF178CVA bigWig signal p-value ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF048XKK, ENCFF081EMS, ENCFF250EQO, ENCFF881FJP 1216111912 ENCODE Processing Pipeline b2370b13d6e3054aa9da02dce09fe5f3 https://www.encodeproject.org/files/ENCFF178CVA/@@download/ENCFF178CVA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF303WXI bigWig fold change over control ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF081EMS, ENCFF250EQO, ENCFF881FJP 828371880 ENCODE Processing Pipeline 24af5f65730b58b9a5a8a04363b339ff https://www.encodeproject.org/files/ENCFF303WXI/@@download/ENCFF303WXI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF718LDF bigWig fold change over control ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF048XKK, ENCFF081EMS, ENCFF250EQO, ENCFF881FJP 1405046437 ENCODE Processing Pipeline 76025fc0090c5be428311895047af19a https://www.encodeproject.org/files/ENCFF718LDF/@@download/ENCFF718LDF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF479TIY bed narrowPeak replicated peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF084SIV, ENCFF307CCU, ENCFF824XPV 707415 ENCODE Processing Pipeline 6e677aac8e0c84d8417f8ba4dafd9ab9 https://www.encodeproject.org/files/ENCFF479TIY/@@download/ENCFF479TIY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF894JPB bigBed narrowPeak replicated peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF479TIY 1556177 ENCODE Processing Pipeline fe6420637afe234e498852378d81f56c https://www.encodeproject.org/files/ENCFF894JPB/@@download/ENCFF894JPB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF780ERF bam unfiltered alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF174MKE, ENCFF275RQQ 3971864836 ENCODE Processing Pipeline 4db64e73fd1c271b531a0e5988838fb7 https://www.encodeproject.org/files/ENCFF780ERF/@@download/ENCFF780ERF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF774VDU bam alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF174MKE, ENCFF275RQQ 2405288639 ENCODE Processing Pipeline 8f351d2d4288caa874acddc99f728328 https://www.encodeproject.org/files/ENCFF774VDU/@@download/ENCFF774VDU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF671ZKT bam unfiltered alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF350EJC 2209289390 ENCODE Processing Pipeline 4bae76ca4e6ddcfa2e70b0cd9e0d8724 https://www.encodeproject.org/files/ENCFF671ZKT/@@download/ENCFF671ZKT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF972GVQ bam alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF350EJC 1531857782 ENCODE Processing Pipeline 9e3921b9a84153e49a92f9047dc961fa https://www.encodeproject.org/files/ENCFF972GVQ/@@download/ENCFF972GVQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF545VDI bed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF774VDU, ENCFF972GVQ 1004543 ENCODE Processing Pipeline 4f297bda1e4707e843afa9d7f28c427a https://www.encodeproject.org/files/ENCFF545VDI/@@download/ENCFF545VDI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF467XIN bed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF972GVQ 780327 ENCODE Processing Pipeline 0134d419760abc020e1596f1963e8e2f https://www.encodeproject.org/files/ENCFF467XIN/@@download/ENCFF467XIN.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF237QXP bed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF774VDU 1155843 ENCODE Processing Pipeline 6064122fdb326368708422db3a1695a4 https://www.encodeproject.org/files/ENCFF237QXP/@@download/ENCFF237QXP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF637UMI bigBed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF467XIN 2333130 ENCODE Processing Pipeline 5d62f96c87675d6b38eeec3f5a4396b7 https://www.encodeproject.org/files/ENCFF637UMI/@@download/ENCFF637UMI.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF633MGX bigBed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF545VDI 2798474 ENCODE Processing Pipeline 50776ba5155a02c822ef676517304785 https://www.encodeproject.org/files/ENCFF633MGX/@@download/ENCFF633MGX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF201NFM bigBed narrowPeak peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF237QXP 2712757 ENCODE Processing Pipeline 114c9b382d661f9684e4fb80563776a9 https://www.encodeproject.org/files/ENCFF201NFM/@@download/ENCFF201NFM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF096UUD bigWig signal p-value ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF972GVQ 767015255 ENCODE Processing Pipeline 45178a5f3c75f1ba858eb9d5d7ccc812 https://www.encodeproject.org/files/ENCFF096UUD/@@download/ENCFF096UUD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF148ULJ bigWig signal p-value ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF774VDU 961572736 ENCODE Processing Pipeline 5ea0ad6e28156df6b512ce5dbdaedb38 https://www.encodeproject.org/files/ENCFF148ULJ/@@download/ENCFF148ULJ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF803QGM bigWig signal p-value ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF774VDU, ENCFF972GVQ 1142293109 ENCODE Processing Pipeline 9fc526602662454fa762a91eb8b1fcc4 https://www.encodeproject.org/files/ENCFF803QGM/@@download/ENCFF803QGM.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF227JJN bigWig fold change over control ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF209HPI, ENCFF634NAV, ENCFF972GVQ 872708007 ENCODE Processing Pipeline 4005664b04c4e7ede5a10757f6033f9c https://www.encodeproject.org/files/ENCFF227JJN/@@download/ENCFF227JJN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF468PRV bigWig fold change over control ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF209HPI, ENCFF634NAV, ENCFF774VDU 1203313067 ENCODE Processing Pipeline b896b664d3cff4438b98eb58c3ea78ff https://www.encodeproject.org/files/ENCFF468PRV/@@download/ENCFF468PRV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF720WRB bigWig fold change over control ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF209HPI, ENCFF634NAV, ENCFF774VDU, ENCFF972GVQ 1421509495 ENCODE Processing Pipeline 448873a127c6998c4d313ab51215f579 https://www.encodeproject.org/files/ENCFF720WRB/@@download/ENCFF720WRB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF997COQ bed narrowPeak replicated peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF237QXP, ENCFF467XIN, ENCFF545VDI 685748 ENCODE Processing Pipeline 34bab97291bbea7ba6f2190868971244 https://www.encodeproject.org/files/ENCFF997COQ/@@download/ENCFF997COQ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF071NZH bigBed narrowPeak replicated peaks ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF997COQ 1507638 ENCODE Processing Pipeline 84f543ae06d13687f6d89fb225a4f5d2 https://www.encodeproject.org/files/ENCFF071NZH/@@download/ENCFF071NZH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KGO bam alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KGV 510688705 Bing Ren, UCSD ad8177bf7b7f38528700af5a33f0a00e https://www.encodeproject.org/files/ENCFF001KGO/@@download/ENCFF001KGO.bam mm9 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF001KGP bigBed broadPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXD 776672 Bing Ren, UCSD 0d6bef5442bee2bd4a925c4af62bbc94 https://www.encodeproject.org/files/ENCFF001KGP/@@download/ENCFF001KGP.bigBed mm9 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF001KGQ bam alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KGX 526128828 Bing Ren, UCSD cd04724b536945966d87317151cdabd5 https://www.encodeproject.org/files/ENCFF001KGQ/@@download/ENCFF001KGQ.bam mm9 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF001KGR bigWig signal ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGO, ENCFF001KGQ 57449553 Bing Ren, UCSD ec8928822c3c41d23b398225459a8e7b https://www.encodeproject.org/files/ENCFF001KGR/@@download/ENCFF001KGR.bigWig mm9 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF001KGV fastq reads ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 490210339 Bing Ren, UCSD 556574228d65fcc989b034bba8d8e09e https://www.encodeproject.org/files/ENCFF001KGV/@@download/ENCFF001KGV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIM/ released low read length, inconsistent platforms, control low read depth, low read depth ENCFF001KGX fastq reads ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 511968809 Bing Ren, UCSD 01d4f8a6f9a23821094f640d08c52af6 https://www.encodeproject.org/files/ENCFF001KGX/@@download/ENCFF001KGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIL/ released low read length, inconsistent platforms, control low read depth, low read depth ENCFF001XXD bed broadPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGO, ENCFF001KGQ 509682 Bing Ren, UCSD cd03b080a7d4225ee4b483c1bfb0abd5 https://www.encodeproject.org/files/ENCFF001XXD/@@download/ENCFF001XXD.bed.gz mm9 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF245DUM bam unfiltered alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGV, ENCFF018NEO 551965065 ENCODE Processing Pipeline ebcd5b341fb4b82bf7fb6164f029263e https://www.encodeproject.org/files/ENCFF245DUM/@@download/ENCFF245DUM.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF066RHZ bam unfiltered alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGX, ENCFF018NEO 559474048 ENCODE Processing Pipeline c38213939e882ec1426cdd00da1956e3 https://www.encodeproject.org/files/ENCFF066RHZ/@@download/ENCFF066RHZ.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF442VUL bam alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGX, ENCFF018NEO 425069374 ENCODE Processing Pipeline 82b69b0d27b0dc1851badc16926bc17b https://www.encodeproject.org/files/ENCFF442VUL/@@download/ENCFF442VUL.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF443VMQ bam alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGV, ENCFF018NEO 402512773 ENCODE Processing Pipeline 752f2c11bdb681e346b779db25ca764f https://www.encodeproject.org/files/ENCFF443VMQ/@@download/ENCFF443VMQ.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF442ORZ bigBed narrowPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF622JWF 5078989 ENCODE Processing Pipeline e9fd269a787cea2340424ecaf4df0b68 https://www.encodeproject.org/files/ENCFF442ORZ/@@download/ENCFF442ORZ.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF536NQH bigWig signal p-value ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF443VMQ, ENCFF465PJQ 291376595 ENCODE Processing Pipeline ae973ed3ab3e0bcf879329b0933ac431 https://www.encodeproject.org/files/ENCFF536NQH/@@download/ENCFF536NQH.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF445IUE bed narrowPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF442VUL, ENCFF443VMQ, ENCFF465PJQ 1763542 ENCODE Processing Pipeline 43c44ad2b3d009e48c346959ca19ce57 https://www.encodeproject.org/files/ENCFF445IUE/@@download/ENCFF445IUE.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF039SOB bigBed narrowPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF445IUE 4737723 ENCODE Processing Pipeline 3cff8597c9831ec23faf57ba406ad33d https://www.encodeproject.org/files/ENCFF039SOB/@@download/ENCFF039SOB.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF971IZY bed narrowPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF442VUL, ENCFF465PJQ 1805197 ENCODE Processing Pipeline 73be9b45b16e33bdd182dd3bf3fc5507 https://www.encodeproject.org/files/ENCFF971IZY/@@download/ENCFF971IZY.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF622JWF bed narrowPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF443VMQ, ENCFF465PJQ 1848845 ENCODE Processing Pipeline 5b0f561a9f8acdeecd4267f84d559b2f https://www.encodeproject.org/files/ENCFF622JWF/@@download/ENCFF622JWF.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF147QKD bigBed narrowPeak peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF971IZY 4912395 ENCODE Processing Pipeline c0c3fc20091f1a74b607615c3d7aa9ca https://www.encodeproject.org/files/ENCFF147QKD/@@download/ENCFF147QKD.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF293BFB bigWig signal p-value ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF442VUL, ENCFF465PJQ 294571413 ENCODE Processing Pipeline 80c001b747a7c107040e45d6416ba9d3 https://www.encodeproject.org/files/ENCFF293BFB/@@download/ENCFF293BFB.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF396BNO bigWig signal p-value ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF442VUL, ENCFF443VMQ, ENCFF465PJQ 379295212 ENCODE Processing Pipeline de0128ebcd516043f6598107f04ea4ec https://www.encodeproject.org/files/ENCFF396BNO/@@download/ENCFF396BNO.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF588ISY bigWig fold change over control ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF262EEH, ENCFF442VUL, ENCFF465PJQ 214180598 ENCODE Processing Pipeline 9394050c38835659b313307c8484d6f9 https://www.encodeproject.org/files/ENCFF588ISY/@@download/ENCFF588ISY.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF949LBP bigWig fold change over control ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF443VMQ, ENCFF465PJQ 215839963 ENCODE Processing Pipeline 9763f84ab7476f43f697b4219ba173c6 https://www.encodeproject.org/files/ENCFF949LBP/@@download/ENCFF949LBP.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF691YDA bigWig fold change over control ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF262EEH, ENCFF442VUL, ENCFF443VMQ, ENCFF465PJQ 355338792 ENCODE Processing Pipeline 1638a636e2ed7d917a46404b1d6a4578 https://www.encodeproject.org/files/ENCFF691YDA/@@download/ENCFF691YDA.bigWig mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF190XJE bigBed narrowPeak replicated peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF733HUI 3830769 ENCODE Processing Pipeline 7999edcb40ca71f5685e1f1f81928619 https://www.encodeproject.org/files/ENCFF190XJE/@@download/ENCFF190XJE.bigBed mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF733HUI bed narrowPeak replicated peaks ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF445IUE, ENCFF622JWF, ENCFF971IZY 1950615 ENCODE Processing Pipeline ff8c4eb7c2b47a97c7d0ae3de950f374 https://www.encodeproject.org/files/ENCFF733HUI/@@download/ENCFF733HUI.bed.gz mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF002AJG fastq reads ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 843355800 Bing Ren, UCSD f51a6203e0ae0d2c90f4c4d1a0bc5a94 SRA:SRR3652057 https://www.encodeproject.org/files/ENCFF002AJG/@@download/ENCFF002AJG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APW/ released low read length, antibody characterized with exemption, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AJL fastq reads ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1745609272 Bing Ren, UCSD db3e89db6c320c935f4a014b6b360eec SRA:SRR3652056 https://www.encodeproject.org/files/ENCFF002AJL/@@download/ENCFF002AJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APZ/ released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF701PKN bam alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJL, ENCFF806TVZ 1552367709 ENCODE Processing Pipeline 44d5231787b21b22b36ffbedb40a4ce7 https://www.encodeproject.org/files/ENCFF701PKN/@@download/ENCFF701PKN.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF455NNK fastq reads ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 153042234 Bing Ren, UCSD 76a9e0c4d2c6efefbbfaa9572c591634 SRA:SRR3652058 https://www.encodeproject.org/files/ENCFF455NNK/@@download/ENCFF455NNK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APW/ released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF512DGR bam alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJG, ENCFF455NNK, ENCFF806TVZ 1038306934 ENCODE Processing Pipeline 5c0d30f14b698bc58612ce737b76ce51 https://www.encodeproject.org/files/ENCFF512DGR/@@download/ENCFF512DGR.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830JBF bigWig signal p-value ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF701PKN 435600872 ENCODE Processing Pipeline d342eeb65f319f6f0d37fe2acdec8d89 https://www.encodeproject.org/files/ENCFF830JBF/@@download/ENCFF830JBF.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF051OCM bed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF512DGR, ENCFF716BBX 2414818 ENCODE Processing Pipeline f0b76cbfd9d53c30ad4d1ef00cd7073a https://www.encodeproject.org/files/ENCFF051OCM/@@download/ENCFF051OCM.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF335PGZ bigBed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF275GJF 5073736 ENCODE Processing Pipeline a4c98deecb4ae6b142a74621565ded34 https://www.encodeproject.org/files/ENCFF335PGZ/@@download/ENCFF335PGZ.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF914FIO bigBed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147DNL 7949006 ENCODE Processing Pipeline 511b777abda2b48b27274fdb61563eb3 https://www.encodeproject.org/files/ENCFF914FIO/@@download/ENCFF914FIO.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF497QZC bigWig fold change over control ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF701PKN 543550257 ENCODE Processing Pipeline 9d0897e7ce5a491c0a97cefc8e39c9e5 https://www.encodeproject.org/files/ENCFF497QZC/@@download/ENCFF497QZC.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF295NQQ bed narrowPeak replicated peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF051OCM, ENCFF147DNL, ENCFF275GJF 1782928 ENCODE Processing Pipeline 0b72e1fb4e1dc9da8b30d4d89450a1d0 https://www.encodeproject.org/files/ENCFF295NQQ/@@download/ENCFF295NQQ.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF275GJF bed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF417WKH, ENCFF701PKN 2225973 ENCODE Processing Pipeline 4397136183a6d890a791b0d8698e3d8c https://www.encodeproject.org/files/ENCFF275GJF/@@download/ENCFF275GJF.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF147DNL bed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417WKH, ENCFF512DGR, ENCFF701PKN, ENCFF716BBX 2901727 ENCODE Processing Pipeline 42b71cb9e1cd69bd0a23de61e7b52857 https://www.encodeproject.org/files/ENCFF147DNL/@@download/ENCFF147DNL.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF850FQL bigBed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF051OCM 5218431 ENCODE Processing Pipeline 4b1add2ce735d467ecf51c6091c5bf5e https://www.encodeproject.org/files/ENCFF850FQL/@@download/ENCFF850FQL.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF140KYZ bigWig signal p-value ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF512DGR, ENCFF716BBX 464547363 ENCODE Processing Pipeline 8d144cee5dd4c4acf52b0f326493c65d https://www.encodeproject.org/files/ENCFF140KYZ/@@download/ENCFF140KYZ.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF864OOO bigWig signal p-value ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417WKH, ENCFF512DGR, ENCFF701PKN, ENCFF716BBX 733285228 ENCODE Processing Pipeline 005fe888ada87849ec0fa64e9859744e https://www.encodeproject.org/files/ENCFF864OOO/@@download/ENCFF864OOO.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF453IAI bigWig fold change over control ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF512DGR, ENCFF716BBX 451199862 ENCODE Processing Pipeline e193000c1adb6389835c6c575ade9f68 https://www.encodeproject.org/files/ENCFF453IAI/@@download/ENCFF453IAI.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF937LBE bigWig fold change over control ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417WKH, ENCFF512DGR, ENCFF701PKN, ENCFF716BBX 950364589 ENCODE Processing Pipeline 2488b7a0c59ccd5b3729725b4abccb95 https://www.encodeproject.org/files/ENCFF937LBE/@@download/ENCFF937LBE.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF684YSY bigBed narrowPeak replicated peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF295NQQ 4021295 ENCODE Processing Pipeline ad989a7186727346ca40446d6c26229a https://www.encodeproject.org/files/ENCFF684YSY/@@download/ENCFF684YSY.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF914CDR bam unfiltered alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJG, ENCFF018NEO, ENCFF455NNK 1285418923 ENCODE Processing Pipeline 1ba8e6caf42e6267daf239307124f864 https://www.encodeproject.org/files/ENCFF914CDR/@@download/ENCFF914CDR.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF687SZF bam unfiltered alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJL, ENCFF018NEO 1557934594 ENCODE Processing Pipeline 2e97493e8df123087f995f732e73126e https://www.encodeproject.org/files/ENCFF687SZF/@@download/ENCFF687SZF.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF482ICX bam alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJG, ENCFF018NEO, ENCFF455NNK 994159341 ENCODE Processing Pipeline 229f8a0c256a8990fd305c14e2127cfa https://www.encodeproject.org/files/ENCFF482ICX/@@download/ENCFF482ICX.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF111ANM bam alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJL, ENCFF018NEO 1207777160 ENCODE Processing Pipeline e4a67e075ac1a78c9d3380410c98573e https://www.encodeproject.org/files/ENCFF111ANM/@@download/ENCFF111ANM.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF190RFG bed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF482ICX, ENCFF504TWB 2378813 ENCODE Processing Pipeline 2f44751c0d1ccc8ba0d2dd075db5a2f1 https://www.encodeproject.org/files/ENCFF190RFG/@@download/ENCFF190RFG.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF585GAB bed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF111ANM, ENCFF963FIQ 2066913 ENCODE Processing Pipeline dbde708a58e769870520f85dfd4e31e6 https://www.encodeproject.org/files/ENCFF585GAB/@@download/ENCFF585GAB.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF793VDF bed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF111ANM, ENCFF482ICX, ENCFF504TWB, ENCFF963FIQ 2791514 ENCODE Processing Pipeline 2e3cea1ccd052dc1f37a073313669e48 https://www.encodeproject.org/files/ENCFF793VDF/@@download/ENCFF793VDF.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF346JQH bigBed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFG 5196959 ENCODE Processing Pipeline de000dc59e0bf04c83f39f90c0e94a47 https://www.encodeproject.org/files/ENCFF346JQH/@@download/ENCFF346JQH.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF664BFK bigBed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF585GAB 4831634 ENCODE Processing Pipeline a35f44d803dc669a06d52497b654977f https://www.encodeproject.org/files/ENCFF664BFK/@@download/ENCFF664BFK.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF347VHU bigBed narrowPeak peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF793VDF 7747318 ENCODE Processing Pipeline 848ddee11ec8b3de3b99cbb0fbcce372 https://www.encodeproject.org/files/ENCFF347VHU/@@download/ENCFF347VHU.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF354TWW bigWig signal p-value ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF482ICX, ENCFF504TWB 473136510 ENCODE Processing Pipeline 2511cdefb7dc68ab33d703bee8afa1e9 https://www.encodeproject.org/files/ENCFF354TWW/@@download/ENCFF354TWW.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF883MXX bigWig signal p-value ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF111ANM, ENCFF963FIQ 443491811 ENCODE Processing Pipeline c73a41c3e66c9d6bca85601b8386ba8f https://www.encodeproject.org/files/ENCFF883MXX/@@download/ENCFF883MXX.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF657JEY bigWig signal p-value ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF111ANM, ENCFF482ICX, ENCFF504TWB, ENCFF963FIQ 719947863 ENCODE Processing Pipeline 07f3bdd7559ac52c081947609bb57085 https://www.encodeproject.org/files/ENCFF657JEY/@@download/ENCFF657JEY.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF789WIZ bigWig fold change over control ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF482ICX, ENCFF504TWB 448899541 ENCODE Processing Pipeline 8a9633fc4d0232cb1f7a791861107682 https://www.encodeproject.org/files/ENCFF789WIZ/@@download/ENCFF789WIZ.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF689MUL bigWig fold change over control ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF111ANM, ENCFF963FIQ 536734097 ENCODE Processing Pipeline 56f4cdb10026ca00cb9234f6a51f68b2 https://www.encodeproject.org/files/ENCFF689MUL/@@download/ENCFF689MUL.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF056IYN bigWig fold change over control ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF111ANM, ENCFF482ICX, ENCFF504TWB, ENCFF963FIQ 952878629 ENCODE Processing Pipeline f143914b84b03e332668eb1f8e2eda81 https://www.encodeproject.org/files/ENCFF056IYN/@@download/ENCFF056IYN.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF844YDT bed narrowPeak replicated peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFG, ENCFF585GAB, ENCFF793VDF 1789297 ENCODE Processing Pipeline c8a4e4267478d66a9e267645c0fe9b28 https://www.encodeproject.org/files/ENCFF844YDT/@@download/ENCFF844YDT.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF708YHC bigBed narrowPeak replicated peaks ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF844YDT 4015259 ENCODE Processing Pipeline e8ce42897a404f34f2126219a4ac835e https://www.encodeproject.org/files/ENCFF708YHC/@@download/ENCFF708YHC.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DTM fastq reads ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 36 single-ended 1155336524 Bing Ren, UCSD 58ce83536c264fdc3e771ce2e285a6e2 SRA:SRR3653210 https://www.encodeproject.org/files/ENCFF002DTM/@@download/ENCFF002DTM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUM/ released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DTN fastq reads ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 36 single-ended 1078420832 Bing Ren, UCSD a3f81115af04148fecf1d234eca7acf0 SRA:SRR3653212 https://www.encodeproject.org/files/ENCFF002DTN/@@download/ENCFF002DTN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUS/ released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DTO fastq reads ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 2 36 single-ended 1308496218 Bing Ren, UCSD cf0f64e68f31d2a98cf24bd1a6d642fd SRA:SRR3653211 https://www.encodeproject.org/files/ENCFF002DTO/@@download/ENCFF002DTO.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUM/ released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DTP fastq reads ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 2 50 single-ended 2293414884 Bing Ren, UCSD 8eb83da2cdb32de35af5633bd2219766 SRA:SRR3653213 https://www.encodeproject.org/files/ENCFF002DTP/@@download/ENCFF002DTP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZUS/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF120QVZ bam alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF002DTN, ENCFF002DTP, ENCFF806TVZ 1730981534 ENCODE Processing Pipeline 93cc4bba07e93f977df72d558dc206e1 https://www.encodeproject.org/files/ENCFF120QVZ/@@download/ENCFF120QVZ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF278VHO bam alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF002DTM, ENCFF002DTO, ENCFF806TVZ 1544511245 ENCODE Processing Pipeline 65bb51ec96b30dcc9be4be2060460b83 https://www.encodeproject.org/files/ENCFF278VHO/@@download/ENCFF278VHO.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF865OZU bed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF204GFG, ENCFF278VHO, ENCFF695ODM 95354 ENCODE Processing Pipeline aff277f458c1757cc516fff31bee398e https://www.encodeproject.org/files/ENCFF865OZU/@@download/ENCFF865OZU.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF345ADT bed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF120QVZ, ENCFF204GFG, ENCFF695ODM 694130 ENCODE Processing Pipeline bfffa7cae988ccdcc445eb927d607fbc https://www.encodeproject.org/files/ENCFF345ADT/@@download/ENCFF345ADT.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF809AHV bed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF120QVZ, ENCFF204GFG, ENCFF278VHO, ENCFF695ODM 245134 ENCODE Processing Pipeline 45dd08bfff6a85f5dc3080674118a067 https://www.encodeproject.org/files/ENCFF809AHV/@@download/ENCFF809AHV.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF038WVK bigBed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF865OZU 259887 ENCODE Processing Pipeline d3184322b3362bb6daa4f60358ab5a35 https://www.encodeproject.org/files/ENCFF038WVK/@@download/ENCFF038WVK.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF740WZQ bigBed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF345ADT 1466473 ENCODE Processing Pipeline 3e54b86cfc5fcf55d3d144c53d712da4 https://www.encodeproject.org/files/ENCFF740WZQ/@@download/ENCFF740WZQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF339UVJ bigWig signal p-value ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF120QVZ, ENCFF204GFG, ENCFF695ODM 526086220 ENCODE Processing Pipeline 9d1cda687e20698fe66b6fbc948104fd https://www.encodeproject.org/files/ENCFF339UVJ/@@download/ENCFF339UVJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF644IDB bigBed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF809AHV 603796 ENCODE Processing Pipeline b15b8b32191457570c716311d1c7ff84 https://www.encodeproject.org/files/ENCFF644IDB/@@download/ENCFF644IDB.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF824OHK bigWig fold change over control ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF120QVZ, ENCFF204GFG, ENCFF695ODM 581571456 ENCODE Processing Pipeline 59a86f02710c9e18fa93256083577d95 https://www.encodeproject.org/files/ENCFF824OHK/@@download/ENCFF824OHK.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF758HAF bigWig signal p-value ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF204GFG, ENCFF278VHO, ENCFF695ODM 526195641 ENCODE Processing Pipeline cbbe1752df67213fc9a04ebbbffeb9a2 https://www.encodeproject.org/files/ENCFF758HAF/@@download/ENCFF758HAF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF059ZOW bed narrowPeak replicated peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF345ADT, ENCFF809AHV, ENCFF865OZU 166483 ENCODE Processing Pipeline 5cafaa1536c5a9a938cf87ce1cc8543f https://www.encodeproject.org/files/ENCFF059ZOW/@@download/ENCFF059ZOW.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF912PSJ bigWig fold change over control ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF204GFG, ENCFF278VHO, ENCFF695ODM 594955073 ENCODE Processing Pipeline 55c84c903080e2d5bc4b6662b85336cc https://www.encodeproject.org/files/ENCFF912PSJ/@@download/ENCFF912PSJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF202WSA bigWig signal p-value ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF120QVZ, ENCFF204GFG, ENCFF278VHO, ENCFF695ODM 516128493 ENCODE Processing Pipeline 95d70c15e66a1dbaef08f3d865875068 https://www.encodeproject.org/files/ENCFF202WSA/@@download/ENCFF202WSA.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF233HTV bigWig fold change over control ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF120QVZ, ENCFF204GFG, ENCFF278VHO, ENCFF695ODM 945081813 ENCODE Processing Pipeline fdc49ca7746dce66f48f9243002325ed https://www.encodeproject.org/files/ENCFF233HTV/@@download/ENCFF233HTV.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF380SHB bigBed narrowPeak replicated peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF059ZOW 415109 ENCODE Processing Pipeline 415edd0ab20d4000dde63574d4eac772 https://www.encodeproject.org/files/ENCFF380SHB/@@download/ENCFF380SHB.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF134PCM bam unfiltered alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DTM, ENCFF002DTO, ENCFF018NEO 3131306884 ENCODE Processing Pipeline d593791f7b29446b2e44241feece3ce5 https://www.encodeproject.org/files/ENCFF134PCM/@@download/ENCFF134PCM.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF384PJE bam unfiltered alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DTN, ENCFF002DTP, ENCFF018NEO 3582861170 ENCODE Processing Pipeline 1026723ee303d7238bb8fed81f6347bd https://www.encodeproject.org/files/ENCFF384PJE/@@download/ENCFF384PJE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF828ITY bam alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DTM, ENCFF002DTO, ENCFF018NEO 1543799478 ENCODE Processing Pipeline 8ea68d0d4b22b9d1de609717cf6a4be1 https://www.encodeproject.org/files/ENCFF828ITY/@@download/ENCFF828ITY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF670JTV bam alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DTN, ENCFF002DTP, ENCFF018NEO 1412643599 ENCODE Processing Pipeline 3b87103b42770c81ccae35d8f5a55a7c https://www.encodeproject.org/files/ENCFF670JTV/@@download/ENCFF670JTV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF332SLI bed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF631YQS, ENCFF658BBR, ENCFF828ITY 98480 ENCODE Processing Pipeline a43dc06c48394cd3066e58c76daee56c https://www.encodeproject.org/files/ENCFF332SLI/@@download/ENCFF332SLI.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF750CYJ bed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF670JTV 615639 ENCODE Processing Pipeline e6fd713bcf617afc5896e46132214828 https://www.encodeproject.org/files/ENCFF750CYJ/@@download/ENCFF750CYJ.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF314MUV bigBed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF332SLI 267065 ENCODE Processing Pipeline 65d9f055d20c9e2d67fc2d4cf2d7fa37 https://www.encodeproject.org/files/ENCFF314MUV/@@download/ENCFF314MUV.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF516IXX bed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF631YQS, ENCFF658BBR, ENCFF670JTV, ENCFF828ITY 219366 ENCODE Processing Pipeline 4cac793a10650e17473b3c71bbb89b83 https://www.encodeproject.org/files/ENCFF516IXX/@@download/ENCFF516IXX.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF786OTG bigBed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF750CYJ 1358945 ENCODE Processing Pipeline d55d027e4bf11a6af3cf441fa3e43431 https://www.encodeproject.org/files/ENCFF786OTG/@@download/ENCFF786OTG.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF165MXA bigBed narrowPeak peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF516IXX 560265 ENCODE Processing Pipeline ca81d5fd3c72cad5714a96e62bc596a5 https://www.encodeproject.org/files/ENCFF165MXA/@@download/ENCFF165MXA.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF067JYC bigWig signal p-value ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF631YQS, ENCFF658BBR, ENCFF828ITY 526678383 ENCODE Processing Pipeline 2dfc12ba0be29eda202f2abc74801e63 https://www.encodeproject.org/files/ENCFF067JYC/@@download/ENCFF067JYC.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF414LKU bigWig signal p-value ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF670JTV 530568253 ENCODE Processing Pipeline 0fd29e39dccd394ef0ebf34a957be088 https://www.encodeproject.org/files/ENCFF414LKU/@@download/ENCFF414LKU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF793AWC bigWig signal p-value ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF631YQS, ENCFF658BBR, ENCFF670JTV, ENCFF828ITY 506478196 ENCODE Processing Pipeline 80862daed4ffd93795afc9e6701bf711 https://www.encodeproject.org/files/ENCFF793AWC/@@download/ENCFF793AWC.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF446PHZ bigWig fold change over control ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF631YQS, ENCFF658BBR, ENCFF828ITY 595272021 ENCODE Processing Pipeline 7c277cc14f160b5d433942c0bcacf2c2 https://www.encodeproject.org/files/ENCFF446PHZ/@@download/ENCFF446PHZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF677AAS bigWig fold change over control ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF631YQS, ENCFF658BBR, ENCFF670JTV 566419893 ENCODE Processing Pipeline 30dee34126bbf2591b10dc4fced478c3 https://www.encodeproject.org/files/ENCFF677AAS/@@download/ENCFF677AAS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF052RHA bigWig fold change over control ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF631YQS, ENCFF658BBR, ENCFF670JTV, ENCFF828ITY 929417628 ENCODE Processing Pipeline 8303ef8e46e1fa3ef6f9c6ef74860fdf https://www.encodeproject.org/files/ENCFF052RHA/@@download/ENCFF052RHA.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF926WJL bed narrowPeak replicated peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF332SLI, ENCFF516IXX, ENCFF750CYJ 150720 ENCODE Processing Pipeline 9e9790adb640babd81c78b7d972b2997 https://www.encodeproject.org/files/ENCFF926WJL/@@download/ENCFF926WJL.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF056IUW bigBed narrowPeak replicated peaks ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF926WJL 392492 ENCODE Processing Pipeline 05e4c7b6af8b5c5f5650e125f567be0e https://www.encodeproject.org/files/ENCFF056IUW/@@download/ENCFF056IUW.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF001NLI bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NLK 423380759 Michael Snyder, Stanford 34a5709b61b6d1eb132b308384dd3552 https://www.encodeproject.org/files/ENCFF001NLI/@@download/ENCFF001NLI.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NLJ bigBed narrowPeak peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YIP 414499 Michael Snyder, Stanford 2f40f63440ddb75675f9c989fcfd399b https://www.encodeproject.org/files/ENCFF001NLJ/@@download/ENCFF001NLJ.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NLK fastq reads ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1021375159 Michael Snyder, Stanford 348d49e822c6a54a6b3c1bd3700b638a https://www.encodeproject.org/files/ENCFF001NLK/@@download/ENCFF001NLK.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NLM fastq reads ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 889330379 Michael Snyder, Stanford 3a304a6402dd1b942b81988544f7bde8 https://www.encodeproject.org/files/ENCFF001NLM/@@download/ENCFF001NLM.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NLO bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NLM 346753267 Michael Snyder, Stanford 4f83ddb298ddf2c3841c3710bee5b473 https://www.encodeproject.org/files/ENCFF001NLO/@@download/ENCFF001NLO.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NLP bigWig signal ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NLI, ENCFF001NLO 126957185 Michael Snyder, Stanford 8e6885b30c5a890db8f800ebbaed353f https://www.encodeproject.org/files/ENCFF001NLP/@@download/ENCFF001NLP.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001YIP bed narrowPeak peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NLI, ENCFF001NLO 166563 Michael Snyder, Stanford 93db7637aa311475dee970288f948160 https://www.encodeproject.org/files/ENCFF001YIP/@@download/ENCFF001YIP.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF347UCO bam unfiltered alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NLK, ENCFF018NEO 1023812157 ENCODE Processing Pipeline 04f6c3f324c655c9a197ef1245a6e715 https://www.encodeproject.org/files/ENCFF347UCO/@@download/ENCFF347UCO.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF238JRQ bam unfiltered alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NLM, ENCFF018NEO 895990426 ENCODE Processing Pipeline 76ad50d1b76a237189f354aceaf1aff0 https://www.encodeproject.org/files/ENCFF238JRQ/@@download/ENCFF238JRQ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF206KOY bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NLK, ENCFF018NEO 560173312 ENCODE Processing Pipeline 06d591b56d0b454534d7568dd308ea33 https://www.encodeproject.org/files/ENCFF206KOY/@@download/ENCFF206KOY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF185QAZ bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NLM, ENCFF018NEO 448496441 ENCODE Processing Pipeline afd49e4e479241ca8855d9c0c667f951 https://www.encodeproject.org/files/ENCFF185QAZ/@@download/ENCFF185QAZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF214RLH bigWig signal p-value ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF206KOY, ENCFF339ZWC 230951920 ENCODE Processing Pipeline 33227b6a46eb932d66e7584c210e56c2 https://www.encodeproject.org/files/ENCFF214RLH/@@download/ENCFF214RLH.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF774IVV bigWig signal p-value ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF185QAZ, ENCFF339ZWC 209359637 ENCODE Processing Pipeline e43b8b95eaa19936733dc36c669265f5 https://www.encodeproject.org/files/ENCFF774IVV/@@download/ENCFF774IVV.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF003ZUU bigWig signal p-value ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF185QAZ, ENCFF206KOY, ENCFF339ZWC 223868466 ENCODE Processing Pipeline 364eaa2c3bf5e0f280d3efbb62351c2f https://www.encodeproject.org/files/ENCFF003ZUU/@@download/ENCFF003ZUU.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF279HMV bigWig fold change over control ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF206KOY, ENCFF339ZWC 235358535 ENCODE Processing Pipeline aa5ff35099fd3d920014e02ae3401578 https://www.encodeproject.org/files/ENCFF279HMV/@@download/ENCFF279HMV.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF392HBA bigWig fold change over control ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF185QAZ, ENCFF339ZWC 182661508 ENCODE Processing Pipeline 6643b2f526985065f6d3f91c33823fde https://www.encodeproject.org/files/ENCFF392HBA/@@download/ENCFF392HBA.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF053QBJ bed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF185QAZ, ENCFF339ZWC 4841754 ENCODE Processing Pipeline 73c13c3d8ff0f684e113be2b5dd8ef9b https://www.encodeproject.org/files/ENCFF053QBJ/@@download/ENCFF053QBJ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF449TQX bigBed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF405OWO 12603887 ENCODE Processing Pipeline bbaa230b9ab9dfdbf240cb4c858116a0 https://www.encodeproject.org/files/ENCFF449TQX/@@download/ENCFF449TQX.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF950EEV bigWig fold change over control ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF185QAZ, ENCFF206KOY, ENCFF339ZWC 374477040 ENCODE Processing Pipeline ed150bdc3b61b9863937912819ae28e2 https://www.encodeproject.org/files/ENCFF950EEV/@@download/ENCFF950EEV.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF861WBH bigBed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF053QBJ 12527928 ENCODE Processing Pipeline b2ed988fe610a13f032ebd3d636aa3b4 https://www.encodeproject.org/files/ENCFF861WBH/@@download/ENCFF861WBH.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF966DTT bed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF185QAZ, ENCFF206KOY, ENCFF339ZWC 5626851 ENCODE Processing Pipeline 36a994f61ad9a7bf729d27dc39a02a35 https://www.encodeproject.org/files/ENCFF966DTT/@@download/ENCFF966DTT.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF405OWO bed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF206KOY, ENCFF339ZWC 5020575 ENCODE Processing Pipeline c22950adc96926e896e761c03537fbdf https://www.encodeproject.org/files/ENCFF405OWO/@@download/ENCFF405OWO.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF172NSN bigBed narrowPeak peaks and background as input for IDR ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF966DTT 12730065 ENCODE Processing Pipeline 16a8fa3b7c84ce69b116e8faa7c2ac32 https://www.encodeproject.org/files/ENCFF172NSN/@@download/ENCFF172NSN.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF331ZKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF249SSR 557130 ENCODE Processing Pipeline 0ae0ef02215f2890059c8dd2b5a89aeb https://www.encodeproject.org/files/ENCFF331ZKN/@@download/ENCFF331ZKN.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF449MCJ bed narrowPeak optimal idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF053QBJ, ENCFF405OWO, ENCFF547MET, ENCFF966DTT 229623 ENCODE Processing Pipeline fb23ef72a524a4628a6b0b69a366985d https://www.encodeproject.org/files/ENCFF449MCJ/@@download/ENCFF449MCJ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF249SSR bed narrowPeak conservative idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF053QBJ, ENCFF405OWO, ENCFF547MET, ENCFF966DTT 228769 ENCODE Processing Pipeline c4a3f3ba6ccac89d78f8c97b68e48415 https://www.encodeproject.org/files/ENCFF249SSR/@@download/ENCFF249SSR.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF136GFP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF449MCJ 560002 ENCODE Processing Pipeline 83257db5553c63f6b71ed25613f98ce6 https://www.encodeproject.org/files/ENCFF136GFP/@@download/ENCFF136GFP.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001KFU bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KGF 480198908 Bing Ren, UCSD 31ac7b20f3d0da348996713d315e54d5 https://www.encodeproject.org/files/ENCFF001KFU/@@download/ENCFF001KFU.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KFV bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KGI 721158881 Bing Ren, UCSD f6e93fb5047723c63c59fb2342a5e2eb https://www.encodeproject.org/files/ENCFF001KFV/@@download/ENCFF001KFV.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KFW bigBed broadPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXB 1875083 Bing Ren, UCSD 46d0105f2c6ee692b5962f240a92fa04 https://www.encodeproject.org/files/ENCFF001KFW/@@download/ENCFF001KFW.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KFZ bigWig signal ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KFU, ENCFF001KFV 60278981 Bing Ren, UCSD 8049a51a900f37cd67dda69547ab4bb1 https://www.encodeproject.org/files/ENCFF001KFZ/@@download/ENCFF001KFZ.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KGF fastq reads ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 520377793 Bing Ren, UCSD 4587b81100c026975ea3efcc6c130cfb https://www.encodeproject.org/files/ENCFF001KGF/@@download/ENCFF001KGF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIO/ released low read length insufficient read depth, control insufficient read depth ENCFF001KGI fastq reads ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 785391676 Bing Ren, UCSD 00120797281b63b32e982bd95d9cea9f https://www.encodeproject.org/files/ENCFF001KGI/@@download/ENCFF001KGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIU/ released low read length insufficient read depth, control insufficient read depth ENCFF001XXB bed broadPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KFU, ENCFF001KFV 1297351 Bing Ren, UCSD b3497b1ba326cfc22e57a631849c8a8c https://www.encodeproject.org/files/ENCFF001XXB/@@download/ENCFF001XXB.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF634VDB bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KGI, ENCFF806TVZ 744110509 ENCODE Processing Pipeline 19c14ce1622c61b5864c79dc0105d24b https://www.encodeproject.org/files/ENCFF634VDB/@@download/ENCFF634VDB.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF375JAO bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KGF, ENCFF806TVZ 482183489 ENCODE Processing Pipeline 4517e99645f1f1fd9fc2bd8bbc7dc39a https://www.encodeproject.org/files/ENCFF375JAO/@@download/ENCFF375JAO.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF261FAV bed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF375JAO, ENCFF419RGB, ENCFF452QHE, ENCFF634VDB 2529401 ENCODE Processing Pipeline 8797370084ac25ac7803fb606744ef29 https://www.encodeproject.org/files/ENCFF261FAV/@@download/ENCFF261FAV.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF969VQQ bigBed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF543XDS 6113783 ENCODE Processing Pipeline 883d2648870278b9cb44292a9d1b88fe https://www.encodeproject.org/files/ENCFF969VQQ/@@download/ENCFF969VQQ.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF416FDT bigBed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF494ATZ 10166815 ENCODE Processing Pipeline 4f437f5bf0828375d035bf3cad9b24d4 https://www.encodeproject.org/files/ENCFF416FDT/@@download/ENCFF416FDT.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF494ATZ bed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF375JAO, ENCFF419RGB, ENCFF452QHE 3610358 ENCODE Processing Pipeline 88429bbb07f7fb5b71d026f1325fb2f7 https://www.encodeproject.org/files/ENCFF494ATZ/@@download/ENCFF494ATZ.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF543XDS bed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF634VDB 2659071 ENCODE Processing Pipeline cc1028c0751ae829b7bb6bb941ff3696 https://www.encodeproject.org/files/ENCFF543XDS/@@download/ENCFF543XDS.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF375IAB bigWig fold change over control ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF375JAO, ENCFF419RGB, ENCFF452QHE 232471065 ENCODE Processing Pipeline a0db731033ed39f05bd62f6d0e688a44 https://www.encodeproject.org/files/ENCFF375IAB/@@download/ENCFF375IAB.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF792KXQ bigBed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF261FAV 7268572 ENCODE Processing Pipeline 0ae628c629c02f8e45bcc57f99097f37 https://www.encodeproject.org/files/ENCFF792KXQ/@@download/ENCFF792KXQ.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF442QSO bigWig signal p-value ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF375JAO, ENCFF419RGB, ENCFF452QHE 347192719 ENCODE Processing Pipeline 3fbfcd7b36902408abc560d503780948 https://www.encodeproject.org/files/ENCFF442QSO/@@download/ENCFF442QSO.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF715MMM bigWig signal p-value ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF375JAO, ENCFF419RGB, ENCFF452QHE, ENCFF634VDB 364781636 ENCODE Processing Pipeline 2eb0ebaf329912aa5aa63661192b0e56 https://www.encodeproject.org/files/ENCFF715MMM/@@download/ENCFF715MMM.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF714FAL bigWig signal p-value ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF634VDB 355271789 ENCODE Processing Pipeline 0e6e4f6572cb8a94c6b676472df53518 https://www.encodeproject.org/files/ENCFF714FAL/@@download/ENCFF714FAL.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF023EDD bigWig fold change over control ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF375JAO, ENCFF419RGB, ENCFF452QHE, ENCFF634VDB 479118636 ENCODE Processing Pipeline b0228cac80e7cb1db38b11812b304b2b https://www.encodeproject.org/files/ENCFF023EDD/@@download/ENCFF023EDD.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF249VJP bigWig fold change over control ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF634VDB 324218754 ENCODE Processing Pipeline eef079f8fc99dc2be4ac50a55c22dc66 https://www.encodeproject.org/files/ENCFF249VJP/@@download/ENCFF249VJP.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF044XUO bed narrowPeak replicated peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF261FAV, ENCFF494ATZ, ENCFF543XDS 3024629 ENCODE Processing Pipeline 3b680e38e059449c0846c308c286a347 https://www.encodeproject.org/files/ENCFF044XUO/@@download/ENCFF044XUO.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF335VUT bigBed narrowPeak replicated peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF044XUO 6515390 ENCODE Processing Pipeline 12d8f6742bd572a1c0b445b1fb448297 https://www.encodeproject.org/files/ENCFF335VUT/@@download/ENCFF335VUT.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF851BHF bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGF, ENCFF018NEO 482105890 ENCODE Processing Pipeline 448f6f327d5d7c1d409a57c2809cece0 https://www.encodeproject.org/files/ENCFF851BHF/@@download/ENCFF851BHF.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF379KDU bam unfiltered alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGF, ENCFF018NEO 587851426 ENCODE Processing Pipeline cb9137292224279677da76a750aa4259 https://www.encodeproject.org/files/ENCFF379KDU/@@download/ENCFF379KDU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF161KGW bam unfiltered alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGI, ENCFF018NEO 911418365 ENCODE Processing Pipeline 76ed98da9a2e5fe930f730feafd05aa2 https://www.encodeproject.org/files/ENCFF161KGW/@@download/ENCFF161KGW.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF923LLN bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGI, ENCFF018NEO 743976652 ENCODE Processing Pipeline afb0b05b0f8cbcfe36da31732d929dde https://www.encodeproject.org/files/ENCFF923LLN/@@download/ENCFF923LLN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF200PJH bed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF842YLI, ENCFF923LLN 1153023 ENCODE Processing Pipeline 55d5f7a7b9b2f08bffcb9c035fa76950 https://www.encodeproject.org/files/ENCFF200PJH/@@download/ENCFF200PJH.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF357HZE bigBed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF200PJH 2840494 ENCODE Processing Pipeline 1561a468a811d2cb86dbfff666c9d9bc https://www.encodeproject.org/files/ENCFF357HZE/@@download/ENCFF357HZE.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF982TRK bigWig fold change over control ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF842YLI, ENCFF923LLN 266280303 ENCODE Processing Pipeline 16ec6ced935018fef788500d54677571 https://www.encodeproject.org/files/ENCFF982TRK/@@download/ENCFF982TRK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF415BLI bigWig fold change over control ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF842YLI, ENCFF851BHF, ENCFF923LLN, ENCFF951GMQ 475529483 ENCODE Processing Pipeline 9479ff835d0ab9455bed9fa1fa214519 https://www.encodeproject.org/files/ENCFF415BLI/@@download/ENCFF415BLI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF595BPW bed narrowPeak replicated peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF008YUM, ENCFF200PJH, ENCFF971UTI 2884466 ENCODE Processing Pipeline c2a08e3dc2159a3ffe682666bebb7e4e https://www.encodeproject.org/files/ENCFF595BPW/@@download/ENCFF595BPW.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF529YAV bigBed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF008YUM 7266953 ENCODE Processing Pipeline 060d82753ba44aa1af410bf4c502ffd3 https://www.encodeproject.org/files/ENCFF529YAV/@@download/ENCFF529YAV.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF845OXQ bigWig fold change over control ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF842YLI, ENCFF851BHF, ENCFF951GMQ 232974762 ENCODE Processing Pipeline 87d016ca4db556cffd27681098aeac02 https://www.encodeproject.org/files/ENCFF845OXQ/@@download/ENCFF845OXQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF971UTI bed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF842YLI, ENCFF851BHF, ENCFF951GMQ 3611050 ENCODE Processing Pipeline 74eed7239893ebd14284ae2bb9766d61 https://www.encodeproject.org/files/ENCFF971UTI/@@download/ENCFF971UTI.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF339GGW bigBed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF971UTI 10171586 ENCODE Processing Pipeline a2fead46497715ce367a79a56d727318 https://www.encodeproject.org/files/ENCFF339GGW/@@download/ENCFF339GGW.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF130JHW bigWig signal p-value ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF842YLI, ENCFF923LLN 179393892 ENCODE Processing Pipeline 56ad35b78a676d26f62c6496f4f4c1b6 https://www.encodeproject.org/files/ENCFF130JHW/@@download/ENCFF130JHW.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF620KQQ bigBed narrowPeak replicated peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF595BPW 6244941 ENCODE Processing Pipeline d86b00a66e279af0f85f2d0997d2e967 https://www.encodeproject.org/files/ENCFF620KQQ/@@download/ENCFF620KQQ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF008YUM bed narrowPeak peaks ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF842YLI, ENCFF851BHF, ENCFF923LLN, ENCFF951GMQ 2529476 ENCODE Processing Pipeline 9eb969812ce93436a43f63de2b37e127 https://www.encodeproject.org/files/ENCFF008YUM/@@download/ENCFF008YUM.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF659CNG bigWig signal p-value ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF842YLI, ENCFF851BHF, ENCFF951GMQ 302353770 ENCODE Processing Pipeline e50d3caa50980536e5bd5984b15bac4f https://www.encodeproject.org/files/ENCFF659CNG/@@download/ENCFF659CNG.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF700GUA bigWig signal p-value ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF842YLI, ENCFF851BHF, ENCFF923LLN, ENCFF951GMQ 364843977 ENCODE Processing Pipeline e4b0d1e78936d7ab6dec3841f4bf8bf7 https://www.encodeproject.org/files/ENCFF700GUA/@@download/ENCFF700GUA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002EUM fastq reads ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1721450305 Bing Ren, UCSD 6a72a5bcac00737c1e04b186d8aa9b98 SRA:SRR3653242 https://www.encodeproject.org/files/ENCFF002EUM/@@download/ENCFF002EUM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXS/ released low read length ENCFF002EUP fastq reads ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1321082287 Bing Ren, UCSD 8e42fee92be58164467ac8633ec48237 SRA:SRR3653243 https://www.encodeproject.org/files/ENCFF002EUP/@@download/ENCFF002EUP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXU/ released low read length ENCFF035ZDK bam alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUP, ENCFF806TVZ 1049290836 ENCODE Processing Pipeline d4115f9bc2a79790d1ba473e3bf8b4be https://www.encodeproject.org/files/ENCFF035ZDK/@@download/ENCFF035ZDK.bam mm10-minimal archived low read length ENCFF683LUE bam alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUM, ENCFF806TVZ 1334391203 ENCODE Processing Pipeline 97ca3e5d12cafd460921a3741534c206 https://www.encodeproject.org/files/ENCFF683LUE/@@download/ENCFF683LUE.bam mm10-minimal archived low read length ENCFF487TGN bed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF035ZDK, ENCFF532IQU, ENCFF540VMM, ENCFF683LUE 1293511 ENCODE Processing Pipeline 80f4c0a2e1ddb3874fe8a39d7a48124b https://www.encodeproject.org/files/ENCFF487TGN/@@download/ENCFF487TGN.bed.gz mm10-minimal archived low read length ENCFF509NMR bed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF683LUE 1309510 ENCODE Processing Pipeline 584ea0c2e849872149abaa788b79376a https://www.encodeproject.org/files/ENCFF509NMR/@@download/ENCFF509NMR.bed.gz mm10-minimal archived low read length ENCFF959MZP bed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF035ZDK, ENCFF532IQU, ENCFF540VMM 1179633 ENCODE Processing Pipeline d2dbcbaab814581df59f446d0f76c747 https://www.encodeproject.org/files/ENCFF959MZP/@@download/ENCFF959MZP.bed.gz mm10-minimal archived low read length ENCFF264KSF bigBed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF509NMR 3926124 ENCODE Processing Pipeline 24f5e536cdd817814200ff4280024b03 https://www.encodeproject.org/files/ENCFF264KSF/@@download/ENCFF264KSF.bigBed mm10-minimal archived low read length ENCFF739XVV bigBed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF959MZP 3557442 ENCODE Processing Pipeline d3df84901da33946dfe652aede52bb2b https://www.encodeproject.org/files/ENCFF739XVV/@@download/ENCFF739XVV.bigBed mm10-minimal archived low read length ENCFF144NMK bigBed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF487TGN 3785609 ENCODE Processing Pipeline 481d8fc32fd8e7fab4664d47c6cd1095 https://www.encodeproject.org/files/ENCFF144NMK/@@download/ENCFF144NMK.bigBed mm10-minimal archived low read length ENCFF876XXL bigWig signal p-value ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF683LUE 706285932 ENCODE Processing Pipeline f42109bbcd7736c8eb8d42bdd0dd80a6 https://www.encodeproject.org/files/ENCFF876XXL/@@download/ENCFF876XXL.bigWig mm10-minimal archived low read length ENCFF360HGS bigWig signal p-value ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF035ZDK, ENCFF532IQU, ENCFF540VMM 494030045 ENCODE Processing Pipeline 807c93b36c08475d5d68dec7c525bb32 https://www.encodeproject.org/files/ENCFF360HGS/@@download/ENCFF360HGS.bigWig mm10-minimal archived low read length ENCFF512SLQ bigWig signal p-value ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF035ZDK, ENCFF532IQU, ENCFF540VMM, ENCFF683LUE 889705092 ENCODE Processing Pipeline 89522fd18ac84f4cad5c79b0be01b0ce https://www.encodeproject.org/files/ENCFF512SLQ/@@download/ENCFF512SLQ.bigWig mm10-minimal archived low read length ENCFF567SWV bigWig fold change over control ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF683LUE 666616351 ENCODE Processing Pipeline b3c09886d3a0ea158998b9e66435e1e3 https://www.encodeproject.org/files/ENCFF567SWV/@@download/ENCFF567SWV.bigWig mm10-minimal archived low read length ENCFF918LAI bigWig fold change over control ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF035ZDK, ENCFF532IQU, ENCFF540VMM 556673302 ENCODE Processing Pipeline 6ddb8a6917958888e4cf984a2be446a4 https://www.encodeproject.org/files/ENCFF918LAI/@@download/ENCFF918LAI.bigWig mm10-minimal archived low read length ENCFF795YRP bigWig fold change over control ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF035ZDK, ENCFF532IQU, ENCFF540VMM, ENCFF683LUE 937607090 ENCODE Processing Pipeline 7225b51a42f572d5af9439fafee49fea https://www.encodeproject.org/files/ENCFF795YRP/@@download/ENCFF795YRP.bigWig mm10-minimal archived low read length ENCFF027PHO bed narrowPeak replicated peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF487TGN, ENCFF509NMR, ENCFF959MZP 1114644 ENCODE Processing Pipeline 7a2c1c74b5d8b5baaa19608d1ad9fe87 https://www.encodeproject.org/files/ENCFF027PHO/@@download/ENCFF027PHO.bed.gz mm10-minimal archived low read length ENCFF561ENY bigBed narrowPeak replicated peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF027PHO 2456979 ENCODE Processing Pipeline 15086df6bbb1cf258686ef8b4cb642c1 https://www.encodeproject.org/files/ENCFF561ENY/@@download/ENCFF561ENY.bigBed mm10-minimal archived low read length ENCFF600BER bam unfiltered alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUP, ENCFF018NEO 1639672235 ENCODE Processing Pipeline 0d42ce63fa7beac5cc75a391a9981cfa https://www.encodeproject.org/files/ENCFF600BER/@@download/ENCFF600BER.bam mm10 released low read length ENCFF746MIE bam unfiltered alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUM, ENCFF018NEO 2125600290 ENCODE Processing Pipeline a0200ad02e10d6c87d1776f1761f6abe https://www.encodeproject.org/files/ENCFF746MIE/@@download/ENCFF746MIE.bam mm10 released low read length ENCFF550QPN bam alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUP, ENCFF018NEO 1049077286 ENCODE Processing Pipeline f1beff60da3ae9c959d0d0245babb760 https://www.encodeproject.org/files/ENCFF550QPN/@@download/ENCFF550QPN.bam mm10 released low read length ENCFF674KMB bam alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUM, ENCFF018NEO 1334122632 ENCODE Processing Pipeline 7b70dddabe7748f96759eac76effe293 https://www.encodeproject.org/files/ENCFF674KMB/@@download/ENCFF674KMB.bam mm10 released low read length ENCFF659RCR bed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF674KMB, ENCFF742VJP 1313132 ENCODE Processing Pipeline c9d71f2e28ca1c984e85f7716dc7af50 https://www.encodeproject.org/files/ENCFF659RCR/@@download/ENCFF659RCR.bed.gz mm10 released low read length ENCFF253CPH bed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF550QPN, ENCFF742VJP 1180009 ENCODE Processing Pipeline 428f13b6d872b0f2aa67d908ae710288 https://www.encodeproject.org/files/ENCFF253CPH/@@download/ENCFF253CPH.bed.gz mm10 released low read length ENCFF450RLZ bigBed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF253CPH 3559416 ENCODE Processing Pipeline ff0e9ca9a8251c835b83dbde25b81dd2 https://www.encodeproject.org/files/ENCFF450RLZ/@@download/ENCFF450RLZ.bigBed mm10 released low read length ENCFF080WAB bed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF394IRO, ENCFF550QPN, ENCFF674KMB, ENCFF742VJP 1295708 ENCODE Processing Pipeline a802006705b8b609d82d7c73b7f856d7 https://www.encodeproject.org/files/ENCFF080WAB/@@download/ENCFF080WAB.bed.gz mm10 released low read length ENCFF819ENC bigBed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF659RCR 3938318 ENCODE Processing Pipeline 0433c6fa5cf6bb8b7ae1333767779d6e https://www.encodeproject.org/files/ENCFF819ENC/@@download/ENCFF819ENC.bigBed mm10 released low read length ENCFF030ZUH bigBed narrowPeak peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF080WAB 3791094 ENCODE Processing Pipeline bd558585901c1335db4ef89e9002a017 https://www.encodeproject.org/files/ENCFF030ZUH/@@download/ENCFF030ZUH.bigBed mm10 released low read length ENCFF463UGR bigWig signal p-value ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF674KMB, ENCFF742VJP 624384480 ENCODE Processing Pipeline c06fb9bf452eb6bd490e029ca2aec052 https://www.encodeproject.org/files/ENCFF463UGR/@@download/ENCFF463UGR.bigWig mm10 released low read length ENCFF014DDY bigWig signal p-value ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF550QPN, ENCFF742VJP 494399282 ENCODE Processing Pipeline 1f4f69602445510d146a76ecd90b75fb https://www.encodeproject.org/files/ENCFF014DDY/@@download/ENCFF014DDY.bigWig mm10 released low read length ENCFF102GBE bigWig signal p-value ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF394IRO, ENCFF550QPN, ENCFF674KMB, ENCFF742VJP 889659136 ENCODE Processing Pipeline 6f85fed19fb1d8f5932c753311e031da https://www.encodeproject.org/files/ENCFF102GBE/@@download/ENCFF102GBE.bigWig mm10 released low read length ENCFF955CFN bigWig fold change over control ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF674KMB, ENCFF742VJP 668481429 ENCODE Processing Pipeline 7a2c31f889ddc9da64b4241e1f477f20 https://www.encodeproject.org/files/ENCFF955CFN/@@download/ENCFF955CFN.bigWig mm10 released low read length ENCFF674XJO bigWig fold change over control ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF550QPN, ENCFF742VJP 556317821 ENCODE Processing Pipeline 03d04eca4e59263dc398eb26fc2c4a3e https://www.encodeproject.org/files/ENCFF674XJO/@@download/ENCFF674XJO.bigWig mm10 released low read length ENCFF586VVE bigWig fold change over control ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF394IRO, ENCFF550QPN, ENCFF674KMB, ENCFF742VJP 933218318 ENCODE Processing Pipeline e11100ebb87254572fa3f335d948dd2a https://www.encodeproject.org/files/ENCFF586VVE/@@download/ENCFF586VVE.bigWig mm10 released low read length ENCFF620BBH bed narrowPeak replicated peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF080WAB, ENCFF253CPH, ENCFF659RCR 1113827 ENCODE Processing Pipeline 6ed3caa1f36a538bcb12c1668437d36c https://www.encodeproject.org/files/ENCFF620BBH/@@download/ENCFF620BBH.bed.gz mm10 released low read length ENCFF552QTH bigBed narrowPeak replicated peaks ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF620BBH 2459713 ENCODE Processing Pipeline ab7212d9fa07498ab8c615caa47a5481 https://www.encodeproject.org/files/ENCFF552QTH/@@download/ENCFF552QTH.bigBed mm10 released low read length ENCFF001KWV bigBed broadPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZI 3000253 Bing Ren, UCSD 31b1ae19ae8628e389a2538f0ce5c269 https://www.encodeproject.org/files/ENCFF001KWV/@@download/ENCFF001KWV.bigBed mm9 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KWW bam alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KXF 1769979046 Bing Ren, UCSD 2bbc5b07f5958af9306fff812a7d7c56 https://www.encodeproject.org/files/ENCFF001KWW/@@download/ENCFF001KWW.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KWX bam alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KXI 1657657201 Bing Ren, UCSD 7e603b91e0b270016a6706271ed85829 https://www.encodeproject.org/files/ENCFF001KWX/@@download/ENCFF001KWX.bam mm9 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KWY bigWig signal ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KWW, ENCFF001KWX 72514702 Bing Ren, UCSD d7d41b5bbe22d223b987edfa570416fa https://www.encodeproject.org/files/ENCFF001KWY/@@download/ENCFF001KWY.bigWig mm9 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KXF fastq reads ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1677203895 Bing Ren, UCSD 9e3c91d67a2e91837d0c9833c7b450f6 https://www.encodeproject.org/files/ENCFF001KXF/@@download/ENCFF001KXF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXE/ released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KXI fastq reads ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1575671754 Bing Ren, UCSD 3b8f693f8a306edc94994ea0d1f33b1c https://www.encodeproject.org/files/ENCFF001KXI/@@download/ENCFF001KXI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001XZI bed broadPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KWW, ENCFF001KWX 1993698 Bing Ren, UCSD bf4ddc3c78495032c127bd159316f238 https://www.encodeproject.org/files/ENCFF001XZI/@@download/ENCFF001XZI.bed.gz mm9 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF503FXE bam unfiltered alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KXI, ENCFF018NEO 1797692835 ENCODE Processing Pipeline aa3a37e4b19e942f27d9445bd46c97de https://www.encodeproject.org/files/ENCFF503FXE/@@download/ENCFF503FXE.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF795ZIX bam unfiltered alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KXF, ENCFF018NEO 1919281959 ENCODE Processing Pipeline 26e7e51decfd7e51713b4b64f2613d70 https://www.encodeproject.org/files/ENCFF795ZIX/@@download/ENCFF795ZIX.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF284EYB bam alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KXI, ENCFF018NEO 1028093575 ENCODE Processing Pipeline f596e6eb07fee3f2bb0781289fbee22c https://www.encodeproject.org/files/ENCFF284EYB/@@download/ENCFF284EYB.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF261QNV bam alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KXF, ENCFF018NEO 1135004358 ENCODE Processing Pipeline b7c339e3d35d29905969a98e5aeaf3d5 https://www.encodeproject.org/files/ENCFF261QNV/@@download/ENCFF261QNV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF261UKG bed narrowPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF261QNV, ENCFF288QPC, ENCFF942MHC 504016 ENCODE Processing Pipeline f359b5cdfa006577b671b2c3fe63b64f https://www.encodeproject.org/files/ENCFF261UKG/@@download/ENCFF261UKG.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF806WZO bed narrowPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF284EYB, ENCFF288QPC, ENCFF942MHC 574703 ENCODE Processing Pipeline 520ff8f5aa459f237b19d2e10f39de07 https://www.encodeproject.org/files/ENCFF806WZO/@@download/ENCFF806WZO.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF218WRO bed narrowPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF261QNV, ENCFF284EYB, ENCFF288QPC, ENCFF942MHC 309682 ENCODE Processing Pipeline aa10794beda80d23002ac188a58345ac https://www.encodeproject.org/files/ENCFF218WRO/@@download/ENCFF218WRO.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF987WQM bigBed narrowPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF261UKG 1037829 ENCODE Processing Pipeline 52b107b55280a0c8898fed6cb3fda436 https://www.encodeproject.org/files/ENCFF987WQM/@@download/ENCFF987WQM.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF252YKA bigBed narrowPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF806WZO 1171396 ENCODE Processing Pipeline e32d7fb7bfeefc0c3571c452c8667950 https://www.encodeproject.org/files/ENCFF252YKA/@@download/ENCFF252YKA.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF877EIS bigBed narrowPeak peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF218WRO 710881 ENCODE Processing Pipeline 6788a5545760cb6e5b75ea26e8f8ee70 https://www.encodeproject.org/files/ENCFF877EIS/@@download/ENCFF877EIS.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF599YXV bigWig signal p-value ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF261QNV, ENCFF288QPC, ENCFF942MHC 189965305 ENCODE Processing Pipeline 9356d83b8378dbe2095ee80c79b3e437 https://www.encodeproject.org/files/ENCFF599YXV/@@download/ENCFF599YXV.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF757SHQ bigWig signal p-value ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF284EYB, ENCFF288QPC, ENCFF942MHC 183378238 ENCODE Processing Pipeline 838c201e2005a9fedfa1fd9e8fac1d41 https://www.encodeproject.org/files/ENCFF757SHQ/@@download/ENCFF757SHQ.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF339MPK bigWig signal p-value ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF261QNV, ENCFF284EYB, ENCFF288QPC, ENCFF942MHC 175906281 ENCODE Processing Pipeline d7b933c17ac569ba8dcb6c139cb05d3a https://www.encodeproject.org/files/ENCFF339MPK/@@download/ENCFF339MPK.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF969GVZ bigWig fold change over control ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF261QNV, ENCFF288QPC, ENCFF942MHC 332565798 ENCODE Processing Pipeline 662419c5b95dacb9633705d01ba4e5c7 https://www.encodeproject.org/files/ENCFF969GVZ/@@download/ENCFF969GVZ.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF385PZL bigWig fold change over control ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF284EYB, ENCFF288QPC, ENCFF942MHC 306812474 ENCODE Processing Pipeline 505138908882349610f40eca9eabb21e https://www.encodeproject.org/files/ENCFF385PZL/@@download/ENCFF385PZL.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF974RAM bigWig fold change over control ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF261QNV, ENCFF284EYB, ENCFF288QPC, ENCFF942MHC 561805704 ENCODE Processing Pipeline 6cf9b38259b8a7dee16dc8e177d38c9d https://www.encodeproject.org/files/ENCFF974RAM/@@download/ENCFF974RAM.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF664NRL bed narrowPeak replicated peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF218WRO, ENCFF261UKG, ENCFF806WZO 211615 ENCODE Processing Pipeline 163e864cc0ccb2617c5e875a0e9d4891 https://www.encodeproject.org/files/ENCFF664NRL/@@download/ENCFF664NRL.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF990TIK bigBed narrowPeak replicated peaks ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF664NRL 507447 ENCODE Processing Pipeline 81a760e36d0fff5ab079611fc85a8049 https://www.encodeproject.org/files/ENCFF990TIK/@@download/ENCFF990TIK.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001NXG bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NYE 436876510 Michael Snyder, Stanford 95ad1e6ba491ec0ee72628fdd1992101 https://www.encodeproject.org/files/ENCFF001NXG/@@download/ENCFF001NXG.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXK bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NYA 488414444 Michael Snyder, Stanford 51d32fa33a7f37d4e180d3dc20715f84 https://www.encodeproject.org/files/ENCFF001NXK/@@download/ENCFF001NXK.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXL bigWig signal ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NXG, ENCFF001NXK 349821225 Michael Snyder, Stanford 46e9dc00c5351985523fbf3b1df0503d https://www.encodeproject.org/files/ENCFF001NXL/@@download/ENCFF001NXL.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYA fastq reads ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 968478204 Michael Snyder, Stanford 7840bcc97bc1c553da07d0d5d58daf59 https://www.encodeproject.org/files/ENCFF001NYA/@@download/ENCFF001NYA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYE fastq reads ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 1652369687 Michael Snyder, Stanford e0b40aba30f2ac2010d4aa9ceaae744b https://www.encodeproject.org/files/ENCFF001NYE/@@download/ENCFF001NYE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF798RJI bed narrowPeak peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NXG, ENCFF001NXK 510074 ENCODE Consortium 81a120a7d5aba04e40d33f0b004a58d2 https://www.encodeproject.org/files/ENCFF798RJI/@@download/ENCFF798RJI.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF633GUP bam unfiltered alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NYA, ENCFF018NEO 1143749151 ENCODE Processing Pipeline 5e415bd466706830564f72082d7477f3 https://www.encodeproject.org/files/ENCFF633GUP/@@download/ENCFF633GUP.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF391ZKT bam unfiltered alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NYE, ENCFF018NEO 1894292859 ENCODE Processing Pipeline 9083a5d499cd1f4b1fe5aa074cf7e0dc https://www.encodeproject.org/files/ENCFF391ZKT/@@download/ENCFF391ZKT.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF052YOZ bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NYA, ENCFF018NEO 743891732 ENCODE Processing Pipeline 40fc1e0dcdbef80a72eceff5e43d617a https://www.encodeproject.org/files/ENCFF052YOZ/@@download/ENCFF052YOZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF689KZB bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NYE, ENCFF018NEO 1181345622 ENCODE Processing Pipeline dd4dd81cad60f7ea5c86d10ad81370cc https://www.encodeproject.org/files/ENCFF689KZB/@@download/ENCFF689KZB.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF373ILW bigWig signal p-value ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF052YOZ, ENCFF171OVT, ENCFF689KZB 281474599 ENCODE Processing Pipeline e6fd480e66c7f9d36d71c7e95ea63795 https://www.encodeproject.org/files/ENCFF373ILW/@@download/ENCFF373ILW.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF478KOH bigWig fold change over control ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF689KZB 422584276 ENCODE Processing Pipeline e5246f6087f9a0f657c95087fedc2554 https://www.encodeproject.org/files/ENCFF478KOH/@@download/ENCFF478KOH.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF188EKK bigWig signal p-value ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF689KZB 306489096 ENCODE Processing Pipeline 98a119daac99b189aa388031eb08d91b https://www.encodeproject.org/files/ENCFF188EKK/@@download/ENCFF188EKK.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF904NKT bigWig fold change over control ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF052YOZ, ENCFF171OVT 322156644 ENCODE Processing Pipeline 6a85d53a8ac34529f32c913ca096fafe https://www.encodeproject.org/files/ENCFF904NKT/@@download/ENCFF904NKT.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF941FDR bed narrowPeak optimal idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF352UNG, ENCFF547MET, ENCFF582KWA, ENCFF665HJW 647297 ENCODE Processing Pipeline 8f2410cfb9221aeb53f8f5757315afbd https://www.encodeproject.org/files/ENCFF941FDR/@@download/ENCFF941FDR.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF836PLO bigWig signal p-value ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF052YOZ, ENCFF171OVT 301468768 ENCODE Processing Pipeline 53b11111c99f6e395299ee1e697a3336 https://www.encodeproject.org/files/ENCFF836PLO/@@download/ENCFF836PLO.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF325EHX bigWig fold change over control ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF052YOZ, ENCFF171OVT, ENCFF689KZB 624509006 ENCODE Processing Pipeline c7ab0ffc0fbe0e98b894234063d2b081 https://www.encodeproject.org/files/ENCFF325EHX/@@download/ENCFF325EHX.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF582KWA bed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF052YOZ, ENCFF171OVT 5438654 ENCODE Processing Pipeline efa8c6f989db89a5dd1b6d2bc6b18b75 https://www.encodeproject.org/files/ENCFF582KWA/@@download/ENCFF582KWA.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF665HJW bed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF689KZB 5936543 ENCODE Processing Pipeline ebaab6f4acaa1e2e949d82e7f54f35c1 https://www.encodeproject.org/files/ENCFF665HJW/@@download/ENCFF665HJW.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF258RTG bigBed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF582KWA 12772057 ENCODE Processing Pipeline f2de37d6affa7bad535dae695e54bcbb https://www.encodeproject.org/files/ENCFF258RTG/@@download/ENCFF258RTG.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF858ODF bigBed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF665HJW 13037049 ENCODE Processing Pipeline f5a7bc57130548e31e3b4149c569a38f https://www.encodeproject.org/files/ENCFF858ODF/@@download/ENCFF858ODF.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF533IYF bigBed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF352UNG 13064236 ENCODE Processing Pipeline 3ce79dcac07f2af2bcfac0fb80f70f64 https://www.encodeproject.org/files/ENCFF533IYF/@@download/ENCFF533IYF.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF167JOI bed narrowPeak conservative idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF352UNG, ENCFF547MET, ENCFF582KWA, ENCFF665HJW 606296 ENCODE Processing Pipeline 636254116ace41107993078b8c49cca6 https://www.encodeproject.org/files/ENCFF167JOI/@@download/ENCFF167JOI.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF807CHY bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF941FDR 1154778 ENCODE Processing Pipeline 0e6691f9fdce3133b0e69e5adc8d88a1 https://www.encodeproject.org/files/ENCFF807CHY/@@download/ENCFF807CHY.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF352UNG bed narrowPeak peaks and background as input for IDR ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF052YOZ, ENCFF171OVT, ENCFF689KZB 6478886 ENCODE Processing Pipeline 623cfadda313b7837f36a93ea35a9245 https://www.encodeproject.org/files/ENCFF352UNG/@@download/ENCFF352UNG.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF998OXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF167JOI 1098187 ENCODE Processing Pipeline 803408fa969c4b23ca8f4dece5d75726 https://www.encodeproject.org/files/ENCFF998OXZ/@@download/ENCFF998OXZ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPP bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF001NQA 377750269 Michael Snyder, Stanford cec02462d29c06d5160267338df28852 https://www.encodeproject.org/files/ENCFF001NPP/@@download/ENCFF001NPP.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPQ bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF001NQG 397872977 Michael Snyder, Stanford c3a899de1d8fbac48b8e2512f1c0b533 https://www.encodeproject.org/files/ENCFF001NPQ/@@download/ENCFF001NPQ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPR bigBed narrowPeak peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001YJD 282244 Michael Snyder, Stanford 9136a70c3b62c906ae8bb4edc9088a20 https://www.encodeproject.org/files/ENCFF001NPR/@@download/ENCFF001NPR.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NPV bigWig signal ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NPP, ENCFF001NPQ 303056755 Michael Snyder, Stanford 536aa065f5a4549235e2d810e36a043c https://www.encodeproject.org/files/ENCFF001NPV/@@download/ENCFF001NPV.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQA fastq reads ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 1 36 single-ended 716368501 Michael Snyder, Stanford 64976867f5b72a18ed1c682f95d2f190 https://www.encodeproject.org/files/ENCFF001NQA/@@download/ENCFF001NQA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NQG fastq reads ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 1 36 single-ended 829109806 Michael Snyder, Stanford 69f482d3dcce968145159c3aeaf8440e https://www.encodeproject.org/files/ENCFF001NQG/@@download/ENCFF001NQG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJD bed narrowPeak peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF001NPP, ENCFF001NPQ 95151 Michael Snyder, Stanford a72483bf362751017e68218b43f78c59 https://www.encodeproject.org/files/ENCFF001YJD/@@download/ENCFF001YJD.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF955BOV bam unfiltered alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NQG, ENCFF018NEO 984891697 ENCODE Processing Pipeline 9e9626ef2e0ce5a9e678fd69c15cca47 https://www.encodeproject.org/files/ENCFF955BOV/@@download/ENCFF955BOV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF973GHE bam unfiltered alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NQA, ENCFF018NEO 864327112 ENCODE Processing Pipeline f4fb5f34716a74709f56e4e60bed82ca https://www.encodeproject.org/files/ENCFF973GHE/@@download/ENCFF973GHE.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF724HAL bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NQG, ENCFF018NEO 582059911 ENCODE Processing Pipeline 93f6e20ba4bc06b5964cbe2e00735f8f https://www.encodeproject.org/files/ENCFF724HAL/@@download/ENCFF724HAL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF329AUN bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NQA, ENCFF018NEO 551292962 ENCODE Processing Pipeline 0b70041bc9599b608f822fa56de8e527 https://www.encodeproject.org/files/ENCFF329AUN/@@download/ENCFF329AUN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF247HCR bigWig signal p-value ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF329AUN 326769090 ENCODE Processing Pipeline a9312962ba4a6cb01e363b87902b2fa3 https://www.encodeproject.org/files/ENCFF247HCR/@@download/ENCFF247HCR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF174KEE bigWig signal p-value ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF724HAL 279865090 ENCODE Processing Pipeline 5497ceb56d81ec7591a85385f8a67acb https://www.encodeproject.org/files/ENCFF174KEE/@@download/ENCFF174KEE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF428NKW bigWig fold change over control ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF329AUN, ENCFF724HAL 448437046 ENCODE Processing Pipeline 5e28497fab05ba6d19ab095896d9cc4c https://www.encodeproject.org/files/ENCFF428NKW/@@download/ENCFF428NKW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF401WSP bigWig signal p-value ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF329AUN, ENCFF724HAL 313198601 ENCODE Processing Pipeline 02779c488c3c535909062b1466b4c2cc https://www.encodeproject.org/files/ENCFF401WSP/@@download/ENCFF401WSP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF592DMT bigWig fold change over control ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF724HAL 272097858 ENCODE Processing Pipeline af51cd31a28f11e8badce460f1a9ac92 https://www.encodeproject.org/files/ENCFF592DMT/@@download/ENCFF592DMT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF841UND bed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF171OVT, ENCFF329AUN, ENCFF724HAL 5359366 ENCODE Processing Pipeline af4045a4f9e21d314e9095f7ef2efa21 https://www.encodeproject.org/files/ENCFF841UND/@@download/ENCFF841UND.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF918HQN bigWig fold change over control ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF329AUN 260677592 ENCODE Processing Pipeline 3f96b50473f226387784149a428db586 https://www.encodeproject.org/files/ENCFF918HQN/@@download/ENCFF918HQN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF075ENR bed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF171OVT, ENCFF724HAL 4792342 ENCODE Processing Pipeline cfae6eb1db2948045cda2cbb74388606 https://www.encodeproject.org/files/ENCFF075ENR/@@download/ENCFF075ENR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF984VHT bigBed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF841UND 10809346 ENCODE Processing Pipeline ede7b02fabd1069c704f0e1b2b92cfc5 https://www.encodeproject.org/files/ENCFF984VHT/@@download/ENCFF984VHT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF345FTL bed narrowPeak optimal idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF075ENR, ENCFF547MET, ENCFF610JIV, ENCFF841UND 191722 ENCODE Processing Pipeline cf2b0536f1f8f619441e10fb32511465 https://www.encodeproject.org/files/ENCFF345FTL/@@download/ENCFF345FTL.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF610JIV bed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF171OVT, ENCFF329AUN 4778385 ENCODE Processing Pipeline ef18598a1dec3d3b96094a2cdf946743 https://www.encodeproject.org/files/ENCFF610JIV/@@download/ENCFF610JIV.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF561IFL bigBed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 ENCFF610JIV 10678901 ENCODE Processing Pipeline 0008c88042187975ac515152ab340561 https://www.encodeproject.org/files/ENCFF561IFL/@@download/ENCFF561IFL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF627NXI bigBed narrowPeak peaks and background as input for IDR ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 ENCFF075ENR 10631673 ENCODE Processing Pipeline 9ff9546438a95326fec8a01cc2128b4c https://www.encodeproject.org/files/ENCFF627NXI/@@download/ENCFF627NXI.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF316XIC bed narrowPeak conservative idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF075ENR, ENCFF547MET, ENCFF610JIV, ENCFF841UND 183421 ENCODE Processing Pipeline 5392277a9dca17d8168856bdd157829c https://www.encodeproject.org/files/ENCFF316XIC/@@download/ENCFF316XIC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF409WMK bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF316XIC 367002 ENCODE Processing Pipeline 100ad6a9086d36e364b4f62b01d98284 https://www.encodeproject.org/files/ENCFF409WMK/@@download/ENCFF409WMK.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF618CQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1, 2 ENCFF345FTL 379262 ENCODE Processing Pipeline d8b730fd0a27eca0afc086862744f8f8 https://www.encodeproject.org/files/ENCFF618CQV/@@download/ENCFF618CQV.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF686NHY fastq reads ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1502366733 Bing Ren, UCSD 8e981849e23ec65a640ec3c422eaa10f SRA:SRR3652213 https://www.encodeproject.org/files/ENCFF686NHY/@@download/ENCFF686NHY.fastq.gz Illumina HiSeq 2500 /files/ENCFF743HQG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF424CWV fastq reads ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 213815523 Bing Ren, UCSD 70a6b5340bfa56209a64338e51734d7b SRA:SRR3652214 https://www.encodeproject.org/files/ENCFF424CWV/@@download/ENCFF424CWV.fastq.gz Illumina HiSeq 2500 /files/ENCFF743HQG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF326NFX fastq reads ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2929589789 Bing Ren, UCSD d6a8a8b87c6ce3d7c8999fb41c08765d SRA:SRR3652211 https://www.encodeproject.org/files/ENCFF326NFX/@@download/ENCFF326NFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF507RYO/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF033CCZ fastq reads ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2459253592 Bing Ren, UCSD 4a8ef989c1fee0e5d40a3800a4ff500b SRA:SRR3652215 https://www.encodeproject.org/files/ENCFF033CCZ/@@download/ENCFF033CCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF743HQG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF876VRJ fastq reads ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1337002195 Bing Ren, UCSD 051f8ba30fde63c03f8f21b197151ece SRA:SRR3652212 https://www.encodeproject.org/files/ENCFF876VRJ/@@download/ENCFF876VRJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF507RYO/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF571UBT bam alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326NFX, ENCFF806TVZ, ENCFF876VRJ 2953580708 ENCODE Processing Pipeline 0c40ac9f2863b49f229b449577d9a989 https://www.encodeproject.org/files/ENCFF571UBT/@@download/ENCFF571UBT.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF444SNF bam alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF033CCZ, ENCFF424CWV, ENCFF686NHY, ENCFF806TVZ 2956994611 ENCODE Processing Pipeline 99e267b6cd8fe374efb2f65b3e9fc1de https://www.encodeproject.org/files/ENCFF444SNF/@@download/ENCFF444SNF.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF864SJP bed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF444SNF, ENCFF834ZUW 1632089 ENCODE Processing Pipeline 6bcd983691bfd59000b17955865865e4 https://www.encodeproject.org/files/ENCFF864SJP/@@download/ENCFF864SJP.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF702QYL bed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF571UBT, ENCFF834ZUW 2363059 ENCODE Processing Pipeline b20043c4ba597a86bebb05de45a86f09 https://www.encodeproject.org/files/ENCFF702QYL/@@download/ENCFF702QYL.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF749POW bed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF326YEF, ENCFF444SNF, ENCFF571UBT, ENCFF834ZUW 2104856 ENCODE Processing Pipeline eaf6e58d79c6bb7c1fca6a8bde3f4bfb https://www.encodeproject.org/files/ENCFF749POW/@@download/ENCFF749POW.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF964PPM bigBed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF864SJP 3223273 ENCODE Processing Pipeline c9cb6ff65faba6ea95cfd5e6cd215d03 https://www.encodeproject.org/files/ENCFF964PPM/@@download/ENCFF964PPM.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF162BWM bigBed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF702QYL 5513238 ENCODE Processing Pipeline 646e6901e5b9dd01591d197668924fa3 https://www.encodeproject.org/files/ENCFF162BWM/@@download/ENCFF162BWM.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF665RDT bigBed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF749POW 4878267 ENCODE Processing Pipeline 41a72d2d58c8bdecd43377cf2c935842 https://www.encodeproject.org/files/ENCFF665RDT/@@download/ENCFF665RDT.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF080MMM bigWig signal p-value ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF444SNF, ENCFF834ZUW 1173993085 ENCODE Processing Pipeline a6604646a0b510ceff1e914fd58d51e7 https://www.encodeproject.org/files/ENCFF080MMM/@@download/ENCFF080MMM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF958PKX bigWig signal p-value ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF571UBT, ENCFF834ZUW 1035640275 ENCODE Processing Pipeline dc07cd9447d86e8b2819e3c6240b5a50 https://www.encodeproject.org/files/ENCFF958PKX/@@download/ENCFF958PKX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF374SKV bigWig signal p-value ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF326YEF, ENCFF444SNF, ENCFF571UBT, ENCFF834ZUW 1526814405 ENCODE Processing Pipeline cb8f6f0feefd713acbb2572006036e28 https://www.encodeproject.org/files/ENCFF374SKV/@@download/ENCFF374SKV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF479EQA bigWig fold change over control ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF326YEF, ENCFF444SNF, ENCFF834ZUW 1171331744 ENCODE Processing Pipeline 8fb2be4dbd60877749f8eff2f61d3b6b https://www.encodeproject.org/files/ENCFF479EQA/@@download/ENCFF479EQA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF735XOK bigWig fold change over control ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF326YEF, ENCFF571UBT, ENCFF834ZUW 1172466889 ENCODE Processing Pipeline 1d3bb762e2686a228bf5bd1bcf3fbec8 https://www.encodeproject.org/files/ENCFF735XOK/@@download/ENCFF735XOK.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF697LSG bigWig fold change over control ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF326YEF, ENCFF444SNF, ENCFF571UBT, ENCFF834ZUW 1673153694 ENCODE Processing Pipeline a2157a49820a7bd4ecd1322061f5cb19 https://www.encodeproject.org/files/ENCFF697LSG/@@download/ENCFF697LSG.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF904FRQ bed narrowPeak replicated peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF702QYL, ENCFF749POW, ENCFF864SJP 1666973 ENCODE Processing Pipeline 6d8ad594ae8a64929020ec5a32cf9703 https://www.encodeproject.org/files/ENCFF904FRQ/@@download/ENCFF904FRQ.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF442BUW bigBed narrowPeak replicated peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF904FRQ 3178866 ENCODE Processing Pipeline 70354b7e61c85452d51c5e07264328f0 https://www.encodeproject.org/files/ENCFF442BUW/@@download/ENCFF442BUW.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF239PQQ bam unfiltered alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF326NFX, ENCFF876VRJ 5068946066 ENCODE Processing Pipeline eaf7b5e097a5c5836f34b994bb836288 https://www.encodeproject.org/files/ENCFF239PQQ/@@download/ENCFF239PQQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF821GXF bam unfiltered alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF033CCZ, ENCFF424CWV, ENCFF686NHY 4985996472 ENCODE Processing Pipeline e6abbf1da49f31868f539fde7580b8e3 https://www.encodeproject.org/files/ENCFF821GXF/@@download/ENCFF821GXF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF057WPD bam alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF033CCZ, ENCFF424CWV, ENCFF686NHY 2956284051 ENCODE Processing Pipeline 2dca7424489dde3572bf5de8dae4e69b https://www.encodeproject.org/files/ENCFF057WPD/@@download/ENCFF057WPD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF146GCW bam alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF326NFX, ENCFF876VRJ 2952921892 ENCODE Processing Pipeline 528850ccf8d49a7fabde68b899e53503 https://www.encodeproject.org/files/ENCFF146GCW/@@download/ENCFF146GCW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF548DIB bed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057WPD, ENCFF643WUI, ENCFF916TFR 1856659 ENCODE Processing Pipeline 3702755edcf7a600a7bfcdc5b687f492 https://www.encodeproject.org/files/ENCFF548DIB/@@download/ENCFF548DIB.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF420HEE bed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF146GCW, ENCFF916TFR 2102282 ENCODE Processing Pipeline f1936441bd25b501c4d10533ddabb14d https://www.encodeproject.org/files/ENCFF420HEE/@@download/ENCFF420HEE.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF298QAA bed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057WPD, ENCFF146GCW, ENCFF643WUI, ENCFF916TFR 2579659 ENCODE Processing Pipeline ae08c0fccc7148fb5167760a2618bafd https://www.encodeproject.org/files/ENCFF298QAA/@@download/ENCFF298QAA.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF442BDC bigBed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF548DIB 3673928 ENCODE Processing Pipeline 317518059c329b0c17d6cd59858efb9b https://www.encodeproject.org/files/ENCFF442BDC/@@download/ENCFF442BDC.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF396HZO bigBed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF420HEE 4911707 ENCODE Processing Pipeline bd3137bb99fd9d6031590f86d506c383 https://www.encodeproject.org/files/ENCFF396HZO/@@download/ENCFF396HZO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF362LTM bigBed narrowPeak peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF298QAA 5991646 ENCODE Processing Pipeline ef69ad3c6696737e2ccf166278f0202d https://www.encodeproject.org/files/ENCFF362LTM/@@download/ENCFF362LTM.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF915NUC bigWig signal p-value ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057WPD, ENCFF643WUI, ENCFF916TFR 1076352932 ENCODE Processing Pipeline 1d5b7c2de76eb7a0a3bdade48080dd4c https://www.encodeproject.org/files/ENCFF915NUC/@@download/ENCFF915NUC.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF687AQG bigWig signal p-value ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF146GCW, ENCFF916TFR 921482784 ENCODE Processing Pipeline ed46437508a076ea7e53f44bb3650273 https://www.encodeproject.org/files/ENCFF687AQG/@@download/ENCFF687AQG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF190HSD bigWig signal p-value ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057WPD, ENCFF146GCW, ENCFF643WUI, ENCFF916TFR 1733096953 ENCODE Processing Pipeline 62da3fb817aa70dfc07dd9decb635f16 https://www.encodeproject.org/files/ENCFF190HSD/@@download/ENCFF190HSD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF938CRQ bigWig fold change over control ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057WPD, ENCFF643WUI, ENCFF916TFR 1265536260 ENCODE Processing Pipeline 6c18340147db17e9207d6e569c36a6b6 https://www.encodeproject.org/files/ENCFF938CRQ/@@download/ENCFF938CRQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF176YJA bigWig fold change over control ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF146GCW, ENCFF916TFR 923756815 ENCODE Processing Pipeline 5f0fbaa07e409ef6e196303068d114bd https://www.encodeproject.org/files/ENCFF176YJA/@@download/ENCFF176YJA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF565NEA bigWig fold change over control ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057WPD, ENCFF146GCW, ENCFF643WUI, ENCFF916TFR 1753310863 ENCODE Processing Pipeline 32af26c3059d95e369df2800dd510358 https://www.encodeproject.org/files/ENCFF565NEA/@@download/ENCFF565NEA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF088MSQ bed narrowPeak replicated peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF298QAA, ENCFF420HEE, ENCFF548DIB 1760252 ENCODE Processing Pipeline f1c532e81b58f671d913edb38c80a0a8 https://www.encodeproject.org/files/ENCFF088MSQ/@@download/ENCFF088MSQ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF527BMF bigBed narrowPeak replicated peaks ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF088MSQ 3303661 ENCODE Processing Pipeline a8329e5bad3258cc39caa87385037f0e https://www.encodeproject.org/files/ENCFF527BMF/@@download/ENCFF527BMF.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AGB fastq reads ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1737324687 Bing Ren, UCSD ab2d44d2e8702113789a70ea56ee396f SRA:SRR3651922 https://www.encodeproject.org/files/ENCFF002AGB/@@download/ENCFF002AGB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARL/ released mild to moderate bottlenecking, control low read depth, inconsistent control read length ENCFF002AGI fastq reads ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2084070667 Bing Ren, UCSD 4e1afe574d5fe30a798aa6b2ee1d7e7b SRA:SRR3651921 https://www.encodeproject.org/files/ENCFF002AGI/@@download/ENCFF002AGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARI/ released mild to moderate bottlenecking, control low read depth, inconsistent control read length ENCFF332FYK bam alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGI, ENCFF806TVZ 1599372536 ENCODE Processing Pipeline a3fee3282d3c7601893ff729f6ae99e1 https://www.encodeproject.org/files/ENCFF332FYK/@@download/ENCFF332FYK.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF201DXG bam alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGB, ENCFF806TVZ 1330786587 ENCODE Processing Pipeline 91a5c0c31a5a645c02ca2be83d012d88 https://www.encodeproject.org/files/ENCFF201DXG/@@download/ENCFF201DXG.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF226LCQ bed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF201DXG, ENCFF332FYK, ENCFF946XCS 1272379 ENCODE Processing Pipeline 2f70136b787e32cc760aa883b9066254 https://www.encodeproject.org/files/ENCFF226LCQ/@@download/ENCFF226LCQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF279OAB bed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF332FYK, ENCFF946XCS 1572270 ENCODE Processing Pipeline f49f03c68b4015cc5de9d66f85b05075 https://www.encodeproject.org/files/ENCFF279OAB/@@download/ENCFF279OAB.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF118RWD bed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF201DXG, ENCFF946XCS 1402542 ENCODE Processing Pipeline b75d62c4bba5310c3fe230b99ed7cc13 https://www.encodeproject.org/files/ENCFF118RWD/@@download/ENCFF118RWD.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF136SIG bigBed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF226LCQ 3479271 ENCODE Processing Pipeline b3a1644f9b721d068073e53642885fec https://www.encodeproject.org/files/ENCFF136SIG/@@download/ENCFF136SIG.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF990ZWO bigBed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF279OAB 3335505 ENCODE Processing Pipeline 34f9a20808225da8381659333103caaf https://www.encodeproject.org/files/ENCFF990ZWO/@@download/ENCFF990ZWO.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF460HSW bigBed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF118RWD 3002118 ENCODE Processing Pipeline 6b638a168d2e81dea3be74af8e7c2d3b https://www.encodeproject.org/files/ENCFF460HSW/@@download/ENCFF460HSW.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF174ERV bigWig signal p-value ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF332FYK, ENCFF946XCS 523744151 ENCODE Processing Pipeline a98752e200582b4ecb32b0de3ff9b48a https://www.encodeproject.org/files/ENCFF174ERV/@@download/ENCFF174ERV.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF506GXJ bigWig signal p-value ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF201DXG, ENCFF946XCS 377056230 ENCODE Processing Pipeline 0b78699a54bc02558fe3039eefea1c43 https://www.encodeproject.org/files/ENCFF506GXJ/@@download/ENCFF506GXJ.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF761AJI bigWig signal p-value ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF201DXG, ENCFF332FYK, ENCFF946XCS 593150315 ENCODE Processing Pipeline 241994cf8c497c7b47412c941d734a0e https://www.encodeproject.org/files/ENCFF761AJI/@@download/ENCFF761AJI.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF995ZYU bigWig fold change over control ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF332FYK, ENCFF946XCS 504654136 ENCODE Processing Pipeline f8948dee60193fc4aafdeef098695924 https://www.encodeproject.org/files/ENCFF995ZYU/@@download/ENCFF995ZYU.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF701SST bigWig fold change over control ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF201DXG, ENCFF946XCS 440473103 ENCODE Processing Pipeline ca1775c33c755cfc7af2425bfa6ee735 https://www.encodeproject.org/files/ENCFF701SST/@@download/ENCFF701SST.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF854GBJ bigWig fold change over control ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF201DXG, ENCFF332FYK, ENCFF946XCS 753797756 ENCODE Processing Pipeline d994be9d35b4225ee956ab1c565388ae https://www.encodeproject.org/files/ENCFF854GBJ/@@download/ENCFF854GBJ.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF797YXI bed narrowPeak replicated peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118RWD, ENCFF226LCQ, ENCFF279OAB 1246087 ENCODE Processing Pipeline 5ffd1e16c323ae379c7a3244b5ce48e5 https://www.encodeproject.org/files/ENCFF797YXI/@@download/ENCFF797YXI.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF601AQX bigBed narrowPeak replicated peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF797YXI 2906941 ENCODE Processing Pipeline 784b79314e482aa6787af22826da627a https://www.encodeproject.org/files/ENCFF601AQX/@@download/ENCFF601AQX.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth ENCFF144UBO bam unfiltered alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGB, ENCFF018NEO 1556366030 ENCODE Processing Pipeline 98925955074603f7421097a67289be51 https://www.encodeproject.org/files/ENCFF144UBO/@@download/ENCFF144UBO.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF315ACF bam unfiltered alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGI, ENCFF018NEO 1870122806 ENCODE Processing Pipeline 733cc5a8c95acb82d468fbb9e5ee381f https://www.encodeproject.org/files/ENCFF315ACF/@@download/ENCFF315ACF.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF211LLN bam alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGB, ENCFF018NEO 1013830426 ENCODE Processing Pipeline ecfdaababa0fb8cb76d35b03ead92cca https://www.encodeproject.org/files/ENCFF211LLN/@@download/ENCFF211LLN.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF498MCD bam alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGI, ENCFF018NEO 1217943878 ENCODE Processing Pipeline 3582787043e08d82b02cf21339467cf4 https://www.encodeproject.org/files/ENCFF498MCD/@@download/ENCFF498MCD.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF177FHK bed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF498MCD 1524703 ENCODE Processing Pipeline 346128618a16a10e592a8e6eb333d4ea https://www.encodeproject.org/files/ENCFF177FHK/@@download/ENCFF177FHK.bed.gz mm10 released mild to moderate bottlenecking, control low read depth ENCFF519ELH bed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF211LLN, ENCFF482UTL 966826 ENCODE Processing Pipeline 8693e7e4ccc23c3dc91530bada4148a8 https://www.encodeproject.org/files/ENCFF519ELH/@@download/ENCFF519ELH.bed.gz mm10 released mild to moderate bottlenecking, control low read depth ENCFF822DJT bed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF211LLN, ENCFF292SSW, ENCFF482UTL, ENCFF498MCD 1420591 ENCODE Processing Pipeline 9b390e16c01d3dd364c786fd24e0c91a https://www.encodeproject.org/files/ENCFF822DJT/@@download/ENCFF822DJT.bed.gz mm10 released mild to moderate bottlenecking, control low read depth ENCFF310XGA bigWig signal p-value ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF498MCD 545994895 ENCODE Processing Pipeline fb41aa8984c962776325152380add17e https://www.encodeproject.org/files/ENCFF310XGA/@@download/ENCFF310XGA.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF075GDU bigBed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF822DJT 3827015 ENCODE Processing Pipeline a0abc24357d904d011ca1ee9f8b30d0b https://www.encodeproject.org/files/ENCFF075GDU/@@download/ENCFF075GDU.bigBed mm10 released mild to moderate bottlenecking, control low read depth ENCFF536PAI bigBed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF177FHK 3246409 ENCODE Processing Pipeline aab383aff44fe629560ad8a89f72577a https://www.encodeproject.org/files/ENCFF536PAI/@@download/ENCFF536PAI.bigBed mm10 released mild to moderate bottlenecking, control low read depth ENCFF417VKS bigBed narrowPeak peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF519ELH 2185082 ENCODE Processing Pipeline e67c704c06bf43fe96d06bf1221e9441 https://www.encodeproject.org/files/ENCFF417VKS/@@download/ENCFF417VKS.bigBed mm10 released mild to moderate bottlenecking, control low read depth ENCFF121BAX bigWig signal p-value ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF211LLN, ENCFF292SSW, ENCFF482UTL, ENCFF498MCD 601101970 ENCODE Processing Pipeline 512ebb3d07b9284c7eb2fc6c1d3dbcca https://www.encodeproject.org/files/ENCFF121BAX/@@download/ENCFF121BAX.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF487USK bigWig fold change over control ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF211LLN, ENCFF482UTL 354279583 ENCODE Processing Pipeline 978607d4da2de72b826295525785adfd https://www.encodeproject.org/files/ENCFF487USK/@@download/ENCFF487USK.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF824TON bigBed narrowPeak replicated peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025JLK 2613986 ENCODE Processing Pipeline 1d529df748b9499c9e1d52054ee96743 https://www.encodeproject.org/files/ENCFF824TON/@@download/ENCFF824TON.bigBed mm10 released mild to moderate bottlenecking, control low read depth ENCFF526ZVA bigWig signal p-value ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF211LLN, ENCFF482UTL 309190294 ENCODE Processing Pipeline 93651bea6d53831fe45e36734f5212a6 https://www.encodeproject.org/files/ENCFF526ZVA/@@download/ENCFF526ZVA.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF628EYD bigWig fold change over control ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF482UTL, ENCFF498MCD 486086929 ENCODE Processing Pipeline 666b1e0a2b3fa198cfbd6eb009acfab7 https://www.encodeproject.org/files/ENCFF628EYD/@@download/ENCFF628EYD.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF224LDB bigWig fold change over control ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF211LLN, ENCFF292SSW, ENCFF482UTL, ENCFF498MCD 745025711 ENCODE Processing Pipeline d46786a7bfa202ae167165dfa32ab59e https://www.encodeproject.org/files/ENCFF224LDB/@@download/ENCFF224LDB.bigWig mm10 released mild to moderate bottlenecking, control low read depth ENCFF025JLK bed narrowPeak replicated peaks ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF177FHK, ENCFF519ELH, ENCFF822DJT 1111128 ENCODE Processing Pipeline d66af30b1be2201d19356c4bb94184f6 https://www.encodeproject.org/files/ENCFF025JLK/@@download/ENCFF025JLK.bed.gz mm10 released mild to moderate bottlenecking, control low read depth ENCFF002AHY fastq reads ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1574380662 Bing Ren, UCSD 94c11ebfee3013ec2e1aababe64269c7 SRA:SRR3651411 https://www.encodeproject.org/files/ENCFF002AHY/@@download/ENCFF002AHY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQJ/ released control low read depth, inconsistent control read length insufficient read depth ENCFF002AIE fastq reads ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1279795245 Bing Ren, UCSD 168abcf28606959d930fa54ffb0c7480 SRA:SRR3651412 https://www.encodeproject.org/files/ENCFF002AIE/@@download/ENCFF002AIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQI/ released control low read depth, inconsistent control read length insufficient read depth ENCFF921JKL bam alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHY, ENCFF806TVZ 1298247860 ENCODE Processing Pipeline 03012f736aeb62b223c80ae262162c3d https://www.encodeproject.org/files/ENCFF921JKL/@@download/ENCFF921JKL.bam mm10-minimal archived control low read depth insufficient read depth ENCFF128QGM bam alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIE, ENCFF806TVZ 1077756991 ENCODE Processing Pipeline a1ba95187e4f29b6633ac50b7ce91ddd https://www.encodeproject.org/files/ENCFF128QGM/@@download/ENCFF128QGM.bam mm10-minimal archived control low read depth insufficient read depth ENCFF588HRN bed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF921JKL, ENCFF991ANF 2521580 ENCODE Processing Pipeline ff47889321bb96d3dd6b00336d36ff7b https://www.encodeproject.org/files/ENCFF588HRN/@@download/ENCFF588HRN.bed.gz mm10-minimal archived control low read depth insufficient read depth ENCFF674LBH bigBed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF588HRN 5516727 ENCODE Processing Pipeline 981d4e8d32229698ce6194644906c70a https://www.encodeproject.org/files/ENCFF674LBH/@@download/ENCFF674LBH.bigBed mm10-minimal archived control low read depth insufficient read depth ENCFF642GQI bed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF128QGM, ENCFF271DZZ, ENCFF991ANF 3029840 ENCODE Processing Pipeline ce80f979297a845e1d1579720ca13989 https://www.encodeproject.org/files/ENCFF642GQI/@@download/ENCFF642GQI.bed.gz mm10-minimal archived control low read depth insufficient read depth ENCFF871XDA bed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF128QGM, ENCFF271DZZ, ENCFF921JKL, ENCFF991ANF 2669629 ENCODE Processing Pipeline de0b7a7bc587084e68638bbf7aaa0745 https://www.encodeproject.org/files/ENCFF871XDA/@@download/ENCFF871XDA.bed.gz mm10-minimal archived control low read depth insufficient read depth ENCFF605WUI bigBed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF642GQI 6426037 ENCODE Processing Pipeline 066a7587eba98f67e010348e528189df https://www.encodeproject.org/files/ENCFF605WUI/@@download/ENCFF605WUI.bigBed mm10-minimal archived control low read depth insufficient read depth ENCFF814XKZ bigBed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF871XDA 5652584 ENCODE Processing Pipeline af82c556e01405647fb969998fffcf96 https://www.encodeproject.org/files/ENCFF814XKZ/@@download/ENCFF814XKZ.bigBed mm10-minimal archived control low read depth insufficient read depth ENCFF405LJJ bigWig signal p-value ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF921JKL, ENCFF991ANF 561152583 ENCODE Processing Pipeline 7f0bc269334a284a63d60b28bfb397bd https://www.encodeproject.org/files/ENCFF405LJJ/@@download/ENCFF405LJJ.bigWig mm10-minimal archived control low read depth insufficient read depth ENCFF202UWH bigWig signal p-value ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF128QGM, ENCFF271DZZ, ENCFF991ANF 446408824 ENCODE Processing Pipeline f2801bfe184d17426c45a45f090f3081 https://www.encodeproject.org/files/ENCFF202UWH/@@download/ENCFF202UWH.bigWig mm10-minimal archived control low read depth insufficient read depth ENCFF133ZML bigWig signal p-value ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF128QGM, ENCFF271DZZ, ENCFF921JKL, ENCFF991ANF 728046253 ENCODE Processing Pipeline 4b4c64a5aad6d7b90206191068ce2c62 https://www.encodeproject.org/files/ENCFF133ZML/@@download/ENCFF133ZML.bigWig mm10-minimal archived control low read depth insufficient read depth ENCFF721XVJ bigWig fold change over control ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF921JKL, ENCFF991ANF 531142023 ENCODE Processing Pipeline 408bbc89150cce776f569658e2a0d4db https://www.encodeproject.org/files/ENCFF721XVJ/@@download/ENCFF721XVJ.bigWig mm10-minimal archived control low read depth insufficient read depth ENCFF998ONL bigWig fold change over control ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF128QGM, ENCFF271DZZ, ENCFF991ANF 432343868 ENCODE Processing Pipeline b4277cf7aa712699a2de7c397a881a9f https://www.encodeproject.org/files/ENCFF998ONL/@@download/ENCFF998ONL.bigWig mm10-minimal archived control low read depth insufficient read depth ENCFF509TYS bed narrowPeak replicated peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF588HRN, ENCFF642GQI, ENCFF871XDA 2293691 ENCODE Processing Pipeline 21717f3b69e730f22c1fbb15cf7bcda2 https://www.encodeproject.org/files/ENCFF509TYS/@@download/ENCFF509TYS.bed.gz mm10-minimal archived control low read depth insufficient read depth ENCFF269DEX bigWig fold change over control ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF128QGM, ENCFF271DZZ, ENCFF921JKL, ENCFF991ANF 764854759 ENCODE Processing Pipeline 745beb3eafe50a59f90562643e1ae203 https://www.encodeproject.org/files/ENCFF269DEX/@@download/ENCFF269DEX.bigWig mm10-minimal archived control low read depth insufficient read depth ENCFF999IBF bigBed narrowPeak replicated peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF509TYS 3990408 ENCODE Processing Pipeline 9bdab98ef160c05fbb285a3f6ee4792a https://www.encodeproject.org/files/ENCFF999IBF/@@download/ENCFF999IBF.bigBed mm10-minimal archived control low read depth insufficient read depth ENCFF852ANS bam unfiltered alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIE, ENCFF018NEO 1150254282 ENCODE Processing Pipeline 62aa81cbea05cc6d57e1c0a42c12414f https://www.encodeproject.org/files/ENCFF852ANS/@@download/ENCFF852ANS.bam mm10 released control low read depth insufficient read depth ENCFF389MMO bam unfiltered alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHY, ENCFF018NEO 1439156032 ENCODE Processing Pipeline e3a04eebdd30a72559a165cc047bfbbc https://www.encodeproject.org/files/ENCFF389MMO/@@download/ENCFF389MMO.bam mm10 released control low read depth insufficient read depth ENCFF448CIM bam alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIE, ENCFF018NEO 839633688 ENCODE Processing Pipeline 0eaf310cc5f8e1efaeb2d647e3c4617a https://www.encodeproject.org/files/ENCFF448CIM/@@download/ENCFF448CIM.bam mm10 released control low read depth insufficient read depth ENCFF499CUA bam alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHY, ENCFF018NEO 1003305833 ENCODE Processing Pipeline 9dc4234297c0e3032d16743c6dcf1b5e https://www.encodeproject.org/files/ENCFF499CUA/@@download/ENCFF499CUA.bam mm10 released control low read depth insufficient read depth ENCFF977UBT bed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF448CIM, ENCFF499CUA, ENCFF688CVA, ENCFF945UFA 2573584 ENCODE Processing Pipeline b2f673d3c41952bf47b46f8b036bde12 https://www.encodeproject.org/files/ENCFF977UBT/@@download/ENCFF977UBT.bed.gz mm10 released control low read depth insufficient read depth ENCFF571CHS bigBed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF704UXZ 6045447 ENCODE Processing Pipeline 1e3510e0aacbbd18378fee3dd19b8795 https://www.encodeproject.org/files/ENCFF571CHS/@@download/ENCFF571CHS.bigBed mm10 released control low read depth insufficient read depth ENCFF297YRX bigBed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF645UWZ 6498292 ENCODE Processing Pipeline 2a9edca8eced613df2390b88bcfcd77d https://www.encodeproject.org/files/ENCFF297YRX/@@download/ENCFF297YRX.bigBed mm10 released control low read depth insufficient read depth ENCFF400QFR bigBed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF977UBT 5453574 ENCODE Processing Pipeline 9235b2617b0f34aed98f20404d2fedf3 https://www.encodeproject.org/files/ENCFF400QFR/@@download/ENCFF400QFR.bigBed mm10 released control low read depth insufficient read depth ENCFF704UXZ bed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF499CUA, ENCFF688CVA, ENCFF945UFA 2763937 ENCODE Processing Pipeline 66f020831842489d7de1052a9ea1f4b2 https://www.encodeproject.org/files/ENCFF704UXZ/@@download/ENCFF704UXZ.bed.gz mm10 released control low read depth insufficient read depth ENCFF645UWZ bed narrowPeak peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF448CIM, ENCFF688CVA, ENCFF945UFA 3049547 ENCODE Processing Pipeline ed967e3b3b3d7b6259a457765e500808 https://www.encodeproject.org/files/ENCFF645UWZ/@@download/ENCFF645UWZ.bed.gz mm10 released control low read depth insufficient read depth ENCFF941MOO bigWig signal p-value ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF499CUA, ENCFF688CVA, ENCFF945UFA 502857738 ENCODE Processing Pipeline 783880d4ad855810b172797d8c0dc99d https://www.encodeproject.org/files/ENCFF941MOO/@@download/ENCFF941MOO.bigWig mm10 released control low read depth insufficient read depth ENCFF894KJY bigWig signal p-value ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF448CIM, ENCFF688CVA, ENCFF945UFA 402056281 ENCODE Processing Pipeline f6b24db11dc493ef54d48d1d0740aa3f https://www.encodeproject.org/files/ENCFF894KJY/@@download/ENCFF894KJY.bigWig mm10 released control low read depth insufficient read depth ENCFF268QFQ bigWig signal p-value ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF448CIM, ENCFF499CUA, ENCFF688CVA, ENCFF945UFA 692458499 ENCODE Processing Pipeline 9730454dd81590dfe9a2eba335e2a693 https://www.encodeproject.org/files/ENCFF268QFQ/@@download/ENCFF268QFQ.bigWig mm10 released control low read depth insufficient read depth ENCFF346VDW bigWig fold change over control ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF499CUA, ENCFF688CVA, ENCFF945UFA 504406514 ENCODE Processing Pipeline 94dc0037cd5725ae191d9b31e7f530af https://www.encodeproject.org/files/ENCFF346VDW/@@download/ENCFF346VDW.bigWig mm10 released control low read depth insufficient read depth ENCFF371FRQ bigWig fold change over control ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF448CIM, ENCFF688CVA, ENCFF945UFA 416622236 ENCODE Processing Pipeline 50439de588be9c093d5b8be083f1e017 https://www.encodeproject.org/files/ENCFF371FRQ/@@download/ENCFF371FRQ.bigWig mm10 released control low read depth insufficient read depth ENCFF118BRC bigWig fold change over control ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF448CIM, ENCFF499CUA, ENCFF688CVA, ENCFF945UFA 721068922 ENCODE Processing Pipeline f36e7a79b0f8ab41b36c6e116488302a https://www.encodeproject.org/files/ENCFF118BRC/@@download/ENCFF118BRC.bigWig mm10 released control low read depth insufficient read depth ENCFF408WBN bigBed narrowPeak replicated peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF103ECO 3951696 ENCODE Processing Pipeline e6a1f3dc1c73b3ee6bf11fcafd6b9398 https://www.encodeproject.org/files/ENCFF408WBN/@@download/ENCFF408WBN.bigBed mm10 released control low read depth insufficient read depth ENCFF103ECO bed narrowPeak replicated peaks ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF645UWZ, ENCFF704UXZ, ENCFF977UBT 2281906 ENCODE Processing Pipeline 12997e096f729d7d73c7abd8c68b18df https://www.encodeproject.org/files/ENCFF103ECO/@@download/ENCFF103ECO.bed.gz mm10 released control low read depth insufficient read depth ENCFF002AOA fastq reads ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1450878486 Bing Ren, UCSD 6d6e78dfd1170ede9accb516d84f82e4 SRA:SRR3651719 https://www.encodeproject.org/files/ENCFF002AOA/@@download/ENCFF002AOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APX/ released low read length, inconsistent control read length ENCFF002AOC fastq reads ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1619798129 Bing Ren, UCSD 002cc485a2d6fec6c733e472c550f334 SRA:SRR3651718 https://www.encodeproject.org/files/ENCFF002AOC/@@download/ENCFF002AOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQA/ released low read length ENCFF347ZAO bam alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOC, ENCFF806TVZ 1163849471 ENCODE Processing Pipeline e4eb571212507e11a3a43d604703f03b https://www.encodeproject.org/files/ENCFF347ZAO/@@download/ENCFF347ZAO.bam mm10-minimal archived low read length ENCFF951TJV bam alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOA, ENCFF806TVZ 1120616777 ENCODE Processing Pipeline edef69fb08c2439a381fa0609759746d https://www.encodeproject.org/files/ENCFF951TJV/@@download/ENCFF951TJV.bam mm10-minimal archived low read length ENCFF780CUO bigBed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF290MUR 2117874 ENCODE Processing Pipeline ceafa933192a09f9b0f8be6ea2d4cec7 https://www.encodeproject.org/files/ENCFF780CUO/@@download/ENCFF780CUO.bigBed mm10-minimal archived low read length ENCFF290MUR bed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF775YLK, ENCFF951TJV 655896 ENCODE Processing Pipeline 6f6e151832a701ae0d626d9e21e1db1c https://www.encodeproject.org/files/ENCFF290MUR/@@download/ENCFF290MUR.bed.gz mm10-minimal archived low read length ENCFF205TVO bed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF347ZAO, ENCFF775YLK 734891 ENCODE Processing Pipeline e237787539a036f6c76bac0a56548ca8 https://www.encodeproject.org/files/ENCFF205TVO/@@download/ENCFF205TVO.bed.gz mm10-minimal archived low read length ENCFF897MXU bed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF347ZAO, ENCFF775YLK, ENCFF951TJV 623267 ENCODE Processing Pipeline 0fb861fd00cabd82efbdc9c210bbb47d https://www.encodeproject.org/files/ENCFF897MXU/@@download/ENCFF897MXU.bed.gz mm10-minimal archived low read length ENCFF611WCC bigBed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF205TVO 1904526 ENCODE Processing Pipeline b1be92292f18a8464125ad8766eb8a1b https://www.encodeproject.org/files/ENCFF611WCC/@@download/ENCFF611WCC.bigBed mm10-minimal archived low read length ENCFF345HCL bigBed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF897MXU 1986905 ENCODE Processing Pipeline a26c668a359d90e44b2397519909d37d https://www.encodeproject.org/files/ENCFF345HCL/@@download/ENCFF345HCL.bigBed mm10-minimal archived low read length ENCFF744NEJ bigWig signal p-value ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF775YLK, ENCFF951TJV 522480724 ENCODE Processing Pipeline f4f637484adc56b81afe6ffbc9f679b4 https://www.encodeproject.org/files/ENCFF744NEJ/@@download/ENCFF744NEJ.bigWig mm10-minimal archived low read length ENCFF260WKC bigWig signal p-value ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF347ZAO, ENCFF775YLK 610541046 ENCODE Processing Pipeline 60dbeec4f7a3f5c7149dec4b46e01034 https://www.encodeproject.org/files/ENCFF260WKC/@@download/ENCFF260WKC.bigWig mm10-minimal archived low read length ENCFF512HUU bigWig signal p-value ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF347ZAO, ENCFF775YLK, ENCFF951TJV 770049615 ENCODE Processing Pipeline cfbd9f4ea4b4c1cd1a312123cabb44b6 https://www.encodeproject.org/files/ENCFF512HUU/@@download/ENCFF512HUU.bigWig mm10-minimal archived low read length ENCFF313OKP bigWig fold change over control ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF775YLK, ENCFF951TJV 537521511 ENCODE Processing Pipeline f47bbb57d06ce2c5619f83148cdb6aa0 https://www.encodeproject.org/files/ENCFF313OKP/@@download/ENCFF313OKP.bigWig mm10-minimal archived low read length ENCFF348KCH bigWig fold change over control ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF347ZAO, ENCFF775YLK 592641206 ENCODE Processing Pipeline b8662a3cbfe020b8dcab5031b129de7c https://www.encodeproject.org/files/ENCFF348KCH/@@download/ENCFF348KCH.bigWig mm10-minimal archived low read length ENCFF914PXI bigWig fold change over control ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF347ZAO, ENCFF775YLK, ENCFF951TJV 900684989 ENCODE Processing Pipeline 13b2707555fdb38923f131c33aa2c737 https://www.encodeproject.org/files/ENCFF914PXI/@@download/ENCFF914PXI.bigWig mm10-minimal archived low read length ENCFF436GZR bigBed narrowPeak replicated peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF002IPF 1544121 ENCODE Processing Pipeline 36799623cc0b3c152e3e4a0cf923534a https://www.encodeproject.org/files/ENCFF436GZR/@@download/ENCFF436GZR.bigBed mm10-minimal archived low read length ENCFF002IPF bed narrowPeak replicated peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF205TVO, ENCFF290MUR, ENCFF897MXU 607686 ENCODE Processing Pipeline 17c53fffc28dcf5848a553ddecc9d94b https://www.encodeproject.org/files/ENCFF002IPF/@@download/ENCFF002IPF.bed.gz mm10-minimal archived low read length ENCFF421ZQJ bam unfiltered alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOA, ENCFF018NEO 1572338156 ENCODE Processing Pipeline fc780cb62be3b83f10d1603b307c2e93 https://www.encodeproject.org/files/ENCFF421ZQJ/@@download/ENCFF421ZQJ.bam mm10 released low read length ENCFF484NRI bam unfiltered alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOC, ENCFF018NEO 1735407089 ENCODE Processing Pipeline 752dbcf964ce86b0b5fd86f4b23ce710 https://www.encodeproject.org/files/ENCFF484NRI/@@download/ENCFF484NRI.bam mm10 released low read length ENCFF584KVI bam alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOA, ENCFF018NEO 1120329433 ENCODE Processing Pipeline 8e9db671162f3659d1793afa0d9293e1 https://www.encodeproject.org/files/ENCFF584KVI/@@download/ENCFF584KVI.bam mm10 released low read length ENCFF353TKR bam alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOC, ENCFF018NEO 1163542890 ENCODE Processing Pipeline 764814a1597e7a0635689b250829233a https://www.encodeproject.org/files/ENCFF353TKR/@@download/ENCFF353TKR.bam mm10 released low read length ENCFF832KCU bed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF584KVI, ENCFF831XWF, ENCFF911DNW 664649 ENCODE Processing Pipeline 1f09624a506c73a9418fa57ccfb95000 https://www.encodeproject.org/files/ENCFF832KCU/@@download/ENCFF832KCU.bed.gz mm10 released low read length ENCFF357KOO bed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF353TKR, ENCFF584KVI, ENCFF831XWF, ENCFF911DNW 613192 ENCODE Processing Pipeline 445005e48acb7c3448cacebb030cac7f https://www.encodeproject.org/files/ENCFF357KOO/@@download/ENCFF357KOO.bed.gz mm10 released low read length ENCFF343WPE bed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF353TKR, ENCFF911DNW 498413 ENCODE Processing Pipeline 93ec8270b7caadd3b28d9ab96c70be33 https://www.encodeproject.org/files/ENCFF343WPE/@@download/ENCFF343WPE.bed.gz mm10 released low read length ENCFF107MWH bigBed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF832KCU 2144201 ENCODE Processing Pipeline 2f94481c74bd646e8baa21d416806aff https://www.encodeproject.org/files/ENCFF107MWH/@@download/ENCFF107MWH.bigBed mm10 released low read length ENCFF113VHB bigBed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF343WPE 1649941 ENCODE Processing Pipeline 1ed36cebd20effe6f5025a9b6c32cbf7 https://www.encodeproject.org/files/ENCFF113VHB/@@download/ENCFF113VHB.bigBed mm10 released low read length ENCFF106DHD bigBed narrowPeak peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF357KOO 1960258 ENCODE Processing Pipeline e5a3e08268126ab58195e0e399c1faec https://www.encodeproject.org/files/ENCFF106DHD/@@download/ENCFF106DHD.bigBed mm10 released low read length ENCFF488JAU bigWig signal p-value ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF584KVI, ENCFF831XWF, ENCFF911DNW 489804497 ENCODE Processing Pipeline 767de7401f72929b6a84d15f5a795ae8 https://www.encodeproject.org/files/ENCFF488JAU/@@download/ENCFF488JAU.bigWig mm10 released low read length ENCFF832BAK bigWig signal p-value ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF353TKR, ENCFF911DNW 411626599 ENCODE Processing Pipeline 8fd1d8aaff15d66aab7d3e8d1787f8b3 https://www.encodeproject.org/files/ENCFF832BAK/@@download/ENCFF832BAK.bigWig mm10 released low read length ENCFF903GHR bigWig signal p-value ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF353TKR, ENCFF584KVI, ENCFF831XWF, ENCFF911DNW 761857125 ENCODE Processing Pipeline c13ffdb4b904894b90f384d0474cd41e https://www.encodeproject.org/files/ENCFF903GHR/@@download/ENCFF903GHR.bigWig mm10 released low read length ENCFF195GPM bigWig fold change over control ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF584KVI, ENCFF831XWF, ENCFF911DNW 550319240 ENCODE Processing Pipeline f25edb44d7752562cd53aa91d0749167 https://www.encodeproject.org/files/ENCFF195GPM/@@download/ENCFF195GPM.bigWig mm10 released low read length ENCFF106LAT bigWig fold change over control ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF353TKR, ENCFF911DNW 459057043 ENCODE Processing Pipeline 86e3879138ee5fb56e1ce9ecb5fc6d67 https://www.encodeproject.org/files/ENCFF106LAT/@@download/ENCFF106LAT.bigWig mm10 released low read length ENCFF657UHZ bigWig fold change over control ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF353TKR, ENCFF584KVI, ENCFF831XWF, ENCFF911DNW 890569128 ENCODE Processing Pipeline c15110c5a9d507bbb4d7fa51d2c952a5 https://www.encodeproject.org/files/ENCFF657UHZ/@@download/ENCFF657UHZ.bigWig mm10 released low read length ENCFF406MRQ bed narrowPeak replicated peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF343WPE, ENCFF357KOO, ENCFF832KCU 580582 ENCODE Processing Pipeline 6b06ea855840867e29824f4551d9c5dc https://www.encodeproject.org/files/ENCFF406MRQ/@@download/ENCFF406MRQ.bed.gz mm10 released low read length ENCFF949UXU bigBed narrowPeak replicated peaks ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF406MRQ 1483106 ENCODE Processing Pipeline 7f42dff4b1b54b457d44485677033f69 https://www.encodeproject.org/files/ENCFF949UXU/@@download/ENCFF949UXU.bigBed mm10 released low read length ENCFF332NMV fastq reads ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1328071421 Richard Myers, HAIB 581c4b94f6a1150c4b82e1e3af1e29fc SRA:SRR5111581 https://www.encodeproject.org/files/ENCFF332NMV/@@download/ENCFF332NMV.fastq.gz Illumina HiSeq 2000 /files/ENCFF756GQQ/ released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF657QHM fastq reads ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1452650760 Richard Myers, HAIB d0b9ded6798473e446004863364350f9 SRA:SRR5111580 https://www.encodeproject.org/files/ENCFF657QHM/@@download/ENCFF657QHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF756GQQ/ released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF279PCQ bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF657QHM, ENCFF806TVZ 1063288502 ENCODE Processing Pipeline d5db14e605b324a554bf1c33a1bea85f https://www.encodeproject.org/files/ENCFF279PCQ/@@download/ENCFF279PCQ.bam mm10-minimal archived antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF338TRQ bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF332NMV, ENCFF806TVZ 986334312 ENCODE Processing Pipeline 8c522f08123279ba3295c07ee99b16d6 https://www.encodeproject.org/files/ENCFF338TRQ/@@download/ENCFF338TRQ.bam mm10-minimal archived antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF780QOO bam unfiltered alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 1350827024 ENCODE Processing Pipeline 07c61cdeb9093d2f32302f8dea461577 https://www.encodeproject.org/files/ENCFF780QOO/@@download/ENCFF780QOO.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF831GJV bam unfiltered alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1472718848 ENCODE Processing Pipeline 568afd6640e2ceebb1e4f907359bce31 https://www.encodeproject.org/files/ENCFF831GJV/@@download/ENCFF831GJV.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF574SPR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 986212519 ENCODE Processing Pipeline fcc8d750a649e2bdcf3324c117bc5f65 https://www.encodeproject.org/files/ENCFF574SPR/@@download/ENCFF574SPR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF504LSR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1063146494 ENCODE Processing Pipeline 1746eff7aba0cda39cdf462da537a0f0 https://www.encodeproject.org/files/ENCFF504LSR/@@download/ENCFF504LSR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF630JQR bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 350023451 ENCODE Processing Pipeline b8126c773068dc02cf60ec23b6da80ef https://www.encodeproject.org/files/ENCFF630JQR/@@download/ENCFF630JQR.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF410PVV bed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 5096078 ENCODE Processing Pipeline 1fd9ea151f684cc4f920ee4d0857fc43 https://www.encodeproject.org/files/ENCFF410PVV/@@download/ENCFF410PVV.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF461GJZ bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 381359210 ENCODE Processing Pipeline ce1198792ebcdf7ae7862e78687009b2 https://www.encodeproject.org/files/ENCFF461GJZ/@@download/ENCFF461GJZ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF709NWF bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 377467904 ENCODE Processing Pipeline c8110853023599dc2c135e7c3233797d https://www.encodeproject.org/files/ENCFF709NWF/@@download/ENCFF709NWF.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF616DGB bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 332867137 ENCODE Processing Pipeline 0429c277b3a972e6528af95a595847ba https://www.encodeproject.org/files/ENCFF616DGB/@@download/ENCFF616DGB.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF633LEJ bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 356456496 ENCODE Processing Pipeline b20a14ca9ec62febd714115eb1dd2a88 https://www.encodeproject.org/files/ENCFF633LEJ/@@download/ENCFF633LEJ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF985TTQ bed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 5736172 ENCODE Processing Pipeline c55ab0ba5257d335517c1ccdb3e2b7cf https://www.encodeproject.org/files/ENCFF985TTQ/@@download/ENCFF985TTQ.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF739QBQ bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 578107703 ENCODE Processing Pipeline e91031b80abb99e8aa72713c97b6fc88 https://www.encodeproject.org/files/ENCFF739QBQ/@@download/ENCFF739QBQ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF707HGS bed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 4995255 ENCODE Processing Pipeline 76cb3926bf9bd430db6e194278407f59 https://www.encodeproject.org/files/ENCFF707HGS/@@download/ENCFF707HGS.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF843LFB bigBed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF707HGS 10976294 ENCODE Processing Pipeline b13ed64b132960432d86b714abec538b https://www.encodeproject.org/files/ENCFF843LFB/@@download/ENCFF843LFB.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF167ZDU bigBed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF410PVV 11044791 ENCODE Processing Pipeline 704d0278efe02a9ce111b6808eb8cdbc https://www.encodeproject.org/files/ENCFF167ZDU/@@download/ENCFF167ZDU.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF187IWI bed narrowPeak conservative idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF410PVV, ENCFF547MET, ENCFF707HGS, ENCFF985TTQ 984356 ENCODE Processing Pipeline 578bddbc63abd93f1ebd2da1a10ebb59 https://www.encodeproject.org/files/ENCFF187IWI/@@download/ENCFF187IWI.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF033EQD bigBed narrowPeak peaks and background as input for IDR ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF985TTQ 11270877 ENCODE Processing Pipeline 920e1d32450c139a9bdf15531d281da9 https://www.encodeproject.org/files/ENCFF033EQD/@@download/ENCFF033EQD.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF746LSE bigBed narrowPeak conservative idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF187IWI 1555726 ENCODE Processing Pipeline 2103019e9635af95c9eaa0993663db5d https://www.encodeproject.org/files/ENCFF746LSE/@@download/ENCFF746LSE.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF116ZIX bed narrowPeak optimal idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF410PVV, ENCFF547MET, ENCFF707HGS, ENCFF985TTQ 1027357 ENCODE Processing Pipeline eda07a85a8016996d2daf94e04674906 https://www.encodeproject.org/files/ENCFF116ZIX/@@download/ENCFF116ZIX.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF223NZE bigBed narrowPeak optimal idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF116ZIX 1608483 ENCODE Processing Pipeline 7f14d0b79daee234ce9b32495752fbc1 https://www.encodeproject.org/files/ENCFF223NZE/@@download/ENCFF223NZE.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF002DQF fastq reads ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 36 single-ended 805388869 Bing Ren, UCSD 37ad28c66a463e26520988c8808fea7d SRA:SRR3653305 https://www.encodeproject.org/files/ENCFF002DQF/@@download/ENCFF002DQF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQK/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQG fastq reads ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 36 single-ended 242031487 Bing Ren, UCSD 49125c97009de10bdd845d5722ffacf2 SRA:SRR3653302 https://www.encodeproject.org/files/ENCFF002DQG/@@download/ENCFF002DQG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQM/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQH fastq reads ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 1311880227 Bing Ren, UCSD d29ea627dfbb0415267de93c9187c53e SRA:SRR3653303 https://www.encodeproject.org/files/ENCFF002DQH/@@download/ENCFF002DQH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQM/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQI fastq reads ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 3 36 single-ended 847029184 Bing Ren, UCSD bef099795802ce648f9030131a5ae845 SRA:SRR3653304 https://www.encodeproject.org/files/ENCFF002DQI/@@download/ENCFF002DQI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQM/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DQL fastq reads ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 3259759123 Bing Ren, UCSD 9a45dbab2dc02963c9500ea82459b7c7 SRA:SRR3653306 https://www.encodeproject.org/files/ENCFF002DQL/@@download/ENCFF002DQL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF084SRA bam alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002DQG, ENCFF002DQH, ENCFF002DQI, ENCFF806TVZ 1120689630 ENCODE Processing Pipeline 3299f192ccdcbf52f4681f25bc3c1a8f https://www.encodeproject.org/files/ENCFF084SRA/@@download/ENCFF084SRA.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF499OOT bam alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002DQF, ENCFF002DQL, ENCFF806TVZ 1261048323 ENCODE Processing Pipeline 6024c5292c57fce97cdf9118481a0fad https://www.encodeproject.org/files/ENCFF499OOT/@@download/ENCFF499OOT.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF195GRX bed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF084SRA, ENCFF499OOT, ENCFF790TLG, ENCFF988JQL 744696 ENCODE Processing Pipeline ecaf470650ed93eb7fc00be8912dd150 https://www.encodeproject.org/files/ENCFF195GRX/@@download/ENCFF195GRX.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF082VOJ bigBed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF629GSZ 1610591 ENCODE Processing Pipeline 21eb1ac6c14fa37bbdf6de13fd5dcd56 https://www.encodeproject.org/files/ENCFF082VOJ/@@download/ENCFF082VOJ.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF104DDM bigBed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF831UBU 1440788 ENCODE Processing Pipeline ce13e05ebed83c7fe5ac0053e8f89521 https://www.encodeproject.org/files/ENCFF104DDM/@@download/ENCFF104DDM.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF831UBU bed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF084SRA, ENCFF790TLG, ENCFF988JQL 647095 ENCODE Processing Pipeline aa246c2abf9f8788279697943cfc2421 https://www.encodeproject.org/files/ENCFF831UBU/@@download/ENCFF831UBU.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF397SCE bigBed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF195GRX 1921249 ENCODE Processing Pipeline 51a12bbf80a25ec137a6eb21321e9284 https://www.encodeproject.org/files/ENCFF397SCE/@@download/ENCFF397SCE.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF629GSZ bed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF499OOT, ENCFF790TLG, ENCFF988JQL 766633 ENCODE Processing Pipeline e25fac0e012cde2d966ec27972a33bf4 https://www.encodeproject.org/files/ENCFF629GSZ/@@download/ENCFF629GSZ.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF337UGW bigWig signal p-value ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF499OOT, ENCFF790TLG, ENCFF988JQL 545346527 ENCODE Processing Pipeline b9056dc719b8b2f49d58b1fb54240bf8 https://www.encodeproject.org/files/ENCFF337UGW/@@download/ENCFF337UGW.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF899CJS bigWig signal p-value ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF084SRA, ENCFF790TLG, ENCFF988JQL 565761789 ENCODE Processing Pipeline ac7024e8c5d043d6286c9ba15ded2ba1 https://www.encodeproject.org/files/ENCFF899CJS/@@download/ENCFF899CJS.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF783VGU bigWig signal p-value ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF084SRA, ENCFF499OOT, ENCFF790TLG, ENCFF988JQL 812209461 ENCODE Processing Pipeline 291aea1cd4378653891727acc914cfd5 https://www.encodeproject.org/files/ENCFF783VGU/@@download/ENCFF783VGU.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF201UEQ bigWig fold change over control ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF499OOT, ENCFF790TLG, ENCFF988JQL 576912923 ENCODE Processing Pipeline c1bdaa9fe5507ae9f40d91c683dbb9c5 https://www.encodeproject.org/files/ENCFF201UEQ/@@download/ENCFF201UEQ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF715XWX bigWig fold change over control ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF084SRA, ENCFF790TLG, ENCFF988JQL 565836041 ENCODE Processing Pipeline ef845d404cef659fa7b50243fd266b36 https://www.encodeproject.org/files/ENCFF715XWX/@@download/ENCFF715XWX.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF799NLK bed narrowPeak replicated peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF195GRX, ENCFF629GSZ, ENCFF831UBU 360074 ENCODE Processing Pipeline 47f93fd876ba7feb9cfd788e8b4d975a https://www.encodeproject.org/files/ENCFF799NLK/@@download/ENCFF799NLK.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF215EST bigWig fold change over control ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF084SRA, ENCFF499OOT, ENCFF790TLG, ENCFF988JQL 883908851 ENCODE Processing Pipeline 328aac44cad40a4a258b1cbfd0c3d1a1 https://www.encodeproject.org/files/ENCFF215EST/@@download/ENCFF215EST.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF834OGD bigBed narrowPeak replicated peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF799NLK 920259 ENCODE Processing Pipeline d5b9ace9fd4c5f80e6620027bcd726c1 https://www.encodeproject.org/files/ENCFF834OGD/@@download/ENCFF834OGD.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF337WSS bam unfiltered alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQG, ENCFF002DQH, ENCFF002DQI, ENCFF018NEO 2979099531 ENCODE Processing Pipeline cac77f662fbee10762274e698562f27f https://www.encodeproject.org/files/ENCFF337WSS/@@download/ENCFF337WSS.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF569OQG bam unfiltered alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQF, ENCFF002DQL, ENCFF018NEO 3332675917 ENCODE Processing Pipeline 28544d421a89e87034dc3684c32e90aa https://www.encodeproject.org/files/ENCFF569OQG/@@download/ENCFF569OQG.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF912DOB bam alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQG, ENCFF002DQH, ENCFF002DQI, ENCFF018NEO 1120052922 ENCODE Processing Pipeline 2a25eac40c6670eb857fedc09a1ec11f https://www.encodeproject.org/files/ENCFF912DOB/@@download/ENCFF912DOB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF321LZQ bam alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQF, ENCFF002DQL, ENCFF018NEO 1021643367 ENCODE Processing Pipeline ba054c3b54c4e23f0f054680938aed06 https://www.encodeproject.org/files/ENCFF321LZQ/@@download/ENCFF321LZQ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF761JXO bed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF621MOH, ENCFF912DOB 339456 ENCODE Processing Pipeline 61dc26bb9c376207aca41640917a5bf3 https://www.encodeproject.org/files/ENCFF761JXO/@@download/ENCFF761JXO.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF807LXZ bed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF321LZQ, ENCFF568CQH, ENCFF621MOH 614317 ENCODE Processing Pipeline c262c907d8e5bb1d62ba62870445c3a0 https://www.encodeproject.org/files/ENCFF807LXZ/@@download/ENCFF807LXZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF802PJZ bigBed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF334IQZ 1797688 ENCODE Processing Pipeline c382e2d42e6893bad0e2e32273ae5b48 https://www.encodeproject.org/files/ENCFF802PJZ/@@download/ENCFF802PJZ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF433VXP bigBed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF807LXZ 1367969 ENCODE Processing Pipeline 712f8be28cbc24d319a1943cd4c02d8e https://www.encodeproject.org/files/ENCFF433VXP/@@download/ENCFF433VXP.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF513QBU bigBed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF761JXO 818966 ENCODE Processing Pipeline d3f47bacb8f7d103ed8533585eb06030 https://www.encodeproject.org/files/ENCFF513QBU/@@download/ENCFF513QBU.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF334IQZ bed narrowPeak peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF321LZQ, ENCFF568CQH, ENCFF621MOH, ENCFF912DOB 678574 ENCODE Processing Pipeline 7e19bd89be17e6f5baab850d9c61abc7 https://www.encodeproject.org/files/ENCFF334IQZ/@@download/ENCFF334IQZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF749OLH bigWig signal p-value ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF321LZQ, ENCFF568CQH, ENCFF621MOH 497736682 ENCODE Processing Pipeline 569d6cf45b7878737ebca15a1bde831e https://www.encodeproject.org/files/ENCFF749OLH/@@download/ENCFF749OLH.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF463LLV bigWig signal p-value ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF621MOH, ENCFF912DOB 441459922 ENCODE Processing Pipeline 939d9c8205262993df35188d156a1501 https://www.encodeproject.org/files/ENCFF463LLV/@@download/ENCFF463LLV.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF475PCZ bigWig signal p-value ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF321LZQ, ENCFF568CQH, ENCFF621MOH, ENCFF912DOB 813584669 ENCODE Processing Pipeline ead7ffc4a4420c6a4f91be47e923c035 https://www.encodeproject.org/files/ENCFF475PCZ/@@download/ENCFF475PCZ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF800CGX bigWig fold change over control ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF621MOH, ENCFF912DOB 460815692 ENCODE Processing Pipeline 5a58c5915f70f4e65d82ef14062d0965 https://www.encodeproject.org/files/ENCFF800CGX/@@download/ENCFF800CGX.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF543VUP bigWig fold change over control ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF321LZQ, ENCFF568CQH, ENCFF621MOH 540785795 ENCODE Processing Pipeline f49204b4b008161cbdf7fb33baeade36 https://www.encodeproject.org/files/ENCFF543VUP/@@download/ENCFF543VUP.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF966CDF bigWig fold change over control ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF321LZQ, ENCFF568CQH, ENCFF621MOH, ENCFF912DOB 858458491 ENCODE Processing Pipeline dce9c05bc24e63ef47e108a1e8e8108e https://www.encodeproject.org/files/ENCFF966CDF/@@download/ENCFF966CDF.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF403PZQ bed narrowPeak replicated peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF334IQZ, ENCFF761JXO, ENCFF807LXZ 310196 ENCODE Processing Pipeline 3307900d2bc5c73347256b4f4a900b5d https://www.encodeproject.org/files/ENCFF403PZQ/@@download/ENCFF403PZQ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF589QTV bigBed narrowPeak replicated peaks ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF403PZQ 828797 ENCODE Processing Pipeline e23257c4b304096335f8ae3133091ac4 https://www.encodeproject.org/files/ENCFF589QTV/@@download/ENCFF589QTV.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002AEL fastq reads ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1443977362 Bing Ren, UCSD 3de8b9668c56ac9459fa9105fec5a9d6 SRA:SRR3652195 https://www.encodeproject.org/files/ENCFF002AEL/@@download/ENCFF002AEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APS/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF153OKY fastq reads ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1071442158 Bing Ren, UCSD b32c4c4f985bf0f33166a096a651c07e SRA:SRR3652194 https://www.encodeproject.org/files/ENCFF153OKY/@@download/ENCFF153OKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APR/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF654PVD bam alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AEL, ENCFF806TVZ 822830292 ENCODE Processing Pipeline 986e6d8fe9b712fa2f02d6fb5ed1fbe2 https://www.encodeproject.org/files/ENCFF654PVD/@@download/ENCFF654PVD.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF646GGK bam alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF153OKY, ENCFF806TVZ 645001808 ENCODE Processing Pipeline 3b4781c8874d8aa6d54ee88ddb955599 https://www.encodeproject.org/files/ENCFF646GGK/@@download/ENCFF646GGK.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF831NXP bigBed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF096ERL 4011828 ENCODE Processing Pipeline 9ec31652f9b24c43b2a1cdfe8fc25a97 https://www.encodeproject.org/files/ENCFF831NXP/@@download/ENCFF831NXP.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF471OGY bed narrowPeak replicated peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF096ERL, ENCFF368UVV, ENCFF834UPG 1220087 ENCODE Processing Pipeline 1f0b22ce57ca8bd5ccf870d6468b042b https://www.encodeproject.org/files/ENCFF471OGY/@@download/ENCFF471OGY.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF834UPG bed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF646GGK, ENCFF654PVD, ENCFF893KXG 1780132 ENCODE Processing Pipeline fd967cbbd64e101de06e012a19cf5eec https://www.encodeproject.org/files/ENCFF834UPG/@@download/ENCFF834UPG.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF301AFR bigWig signal p-value ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF646GGK, ENCFF654PVD, ENCFF893KXG 730041533 ENCODE Processing Pipeline f03e046d6205f2a809e2122ffe74008b https://www.encodeproject.org/files/ENCFF301AFR/@@download/ENCFF301AFR.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF021GFB bigBed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF834UPG 5050993 ENCODE Processing Pipeline ccc4508531ce47a7aed3afa94cc04f72 https://www.encodeproject.org/files/ENCFF021GFB/@@download/ENCFF021GFB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF096ERL bed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF654PVD 1360636 ENCODE Processing Pipeline 95af8ff15a08396ef7dfee494816dbea https://www.encodeproject.org/files/ENCFF096ERL/@@download/ENCFF096ERL.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF368UVV bed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF646GGK, ENCFF893KXG 1364161 ENCODE Processing Pipeline bebe626a6b295f0e5c1bcfa24a5dd156 https://www.encodeproject.org/files/ENCFF368UVV/@@download/ENCFF368UVV.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF221LDB bigBed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF368UVV 3196771 ENCODE Processing Pipeline 5e155b4bf1c4fea2f2d2d09ba4754cb0 https://www.encodeproject.org/files/ENCFF221LDB/@@download/ENCFF221LDB.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF730NXL bigWig signal p-value ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF654PVD 429696392 ENCODE Processing Pipeline c99e0a921b1bcef5d478fa8aaff9924f https://www.encodeproject.org/files/ENCFF730NXL/@@download/ENCFF730NXL.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF764SRI bigWig signal p-value ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF646GGK, ENCFF893KXG 307532808 ENCODE Processing Pipeline 506eb3e1704c5f36800b0893892dce95 https://www.encodeproject.org/files/ENCFF764SRI/@@download/ENCFF764SRI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF152HOR bigWig fold change over control ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF126APW, ENCFF654PVD 385848869 ENCODE Processing Pipeline 052d76a7652725815073870375d302e4 https://www.encodeproject.org/files/ENCFF152HOR/@@download/ENCFF152HOR.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF096DUZ bigWig fold change over control ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF646GGK, ENCFF893KXG 309991685 ENCODE Processing Pipeline 83c7650703574131e56ce0f36e95e90f https://www.encodeproject.org/files/ENCFF096DUZ/@@download/ENCFF096DUZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF074YXF bigWig fold change over control ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF126APW, ENCFF646GGK, ENCFF654PVD, ENCFF893KXG 736623174 ENCODE Processing Pipeline 51e5cccc1b1db51bc9364a00015f7bf8 https://www.encodeproject.org/files/ENCFF074YXF/@@download/ENCFF074YXF.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF298IDE bigBed narrowPeak replicated peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF471OGY 2804051 ENCODE Processing Pipeline e15ea35b63124b891804baeb009b651f https://www.encodeproject.org/files/ENCFF298IDE/@@download/ENCFF298IDE.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF327VAO bam unfiltered alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEL, ENCFF018NEO 1578817361 ENCODE Processing Pipeline c91499d5e13238ce9f7e1190c60cafea https://www.encodeproject.org/files/ENCFF327VAO/@@download/ENCFF327VAO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF902HAR bam unfiltered alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF153OKY 1159711908 ENCODE Processing Pipeline d031f611c6a8bf15f03bb971a229be9d https://www.encodeproject.org/files/ENCFF902HAR/@@download/ENCFF902HAR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF984ITL bam alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEL, ENCFF018NEO 822698757 ENCODE Processing Pipeline d0e4f50e2f8fcd2ca6087a53f43299b3 https://www.encodeproject.org/files/ENCFF984ITL/@@download/ENCFF984ITL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF401QXS bam alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF153OKY 644887569 ENCODE Processing Pipeline 5b5f0ea41c189f7c4592219b2e45be45 https://www.encodeproject.org/files/ENCFF401QXS/@@download/ENCFF401QXS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF439NWM bed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF921XQX, ENCFF984ITL 1364858 ENCODE Processing Pipeline 3eb268a0d470d8ccd63cbeab0d540163 https://www.encodeproject.org/files/ENCFF439NWM/@@download/ENCFF439NWM.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF993AIJ bed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF401QXS 1364488 ENCODE Processing Pipeline 2375bb47c30123a6c0522e4a1818a2da https://www.encodeproject.org/files/ENCFF993AIJ/@@download/ENCFF993AIJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF193IJQ bed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF401QXS, ENCFF921XQX, ENCFF984ITL 1779568 ENCODE Processing Pipeline dfe4f21d8edc38dc86fbd3bd5a758cf8 https://www.encodeproject.org/files/ENCFF193IJQ/@@download/ENCFF193IJQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF162VNQ bigBed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF439NWM 4015290 ENCODE Processing Pipeline 208ecfc49eb6994f1ddbd59db816515e https://www.encodeproject.org/files/ENCFF162VNQ/@@download/ENCFF162VNQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF633NMS bigBed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF993AIJ 3198527 ENCODE Processing Pipeline 42333a1221749c7ab80e99447ecb3542 https://www.encodeproject.org/files/ENCFF633NMS/@@download/ENCFF633NMS.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF037YRO bigBed narrowPeak peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF193IJQ 5051789 ENCODE Processing Pipeline 96eb25c5ce185d114684246178cba3e4 https://www.encodeproject.org/files/ENCFF037YRO/@@download/ENCFF037YRO.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF573UAH bigWig signal p-value ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF921XQX, ENCFF984ITL 383041108 ENCODE Processing Pipeline 884baf853ce1f38631027b907e707cc3 https://www.encodeproject.org/files/ENCFF573UAH/@@download/ENCFF573UAH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF370PYE bigWig signal p-value ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF401QXS 322297263 ENCODE Processing Pipeline f805d76aa58f76b0fbc052857fedf82b https://www.encodeproject.org/files/ENCFF370PYE/@@download/ENCFF370PYE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF342FJI bigWig signal p-value ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF401QXS, ENCFF921XQX, ENCFF984ITL 617779693 ENCODE Processing Pipeline 5d79b77d8fbf6799937d3bbaa2570992 https://www.encodeproject.org/files/ENCFF342FJI/@@download/ENCFF342FJI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF943CXH bigWig fold change over control ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF921XQX, ENCFF984ITL 383548352 ENCODE Processing Pipeline 2d97698bd57699f1704b2d6d8f982c60 https://www.encodeproject.org/files/ENCFF943CXH/@@download/ENCFF943CXH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF740GYC bigWig fold change over control ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF255XXC, ENCFF401QXS 309902235 ENCODE Processing Pipeline ef62533da305438d1cdef414453e5073 https://www.encodeproject.org/files/ENCFF740GYC/@@download/ENCFF740GYC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF071HGW bigWig fold change over control ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF255XXC, ENCFF401QXS, ENCFF921XQX, ENCFF984ITL 736827025 ENCODE Processing Pipeline 91b8f55d230bee9dd6e33ea666f58dcc https://www.encodeproject.org/files/ENCFF071HGW/@@download/ENCFF071HGW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF531BZD bed narrowPeak replicated peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF193IJQ, ENCFF439NWM, ENCFF993AIJ 1214831 ENCODE Processing Pipeline 423bce15187768f1e9a3c59e8f90c8f2 https://www.encodeproject.org/files/ENCFF531BZD/@@download/ENCFF531BZD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF992NCL bigBed narrowPeak replicated peaks ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF531BZD 2796828 ENCODE Processing Pipeline 406334c7c6af47aad54e85c68147898b https://www.encodeproject.org/files/ENCFF992NCL/@@download/ENCFF992NCL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001NXW bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NYF 294317329 Michael Snyder, Stanford d01a42790e6514391cfbf3cf5f349156 https://www.encodeproject.org/files/ENCFF001NXW/@@download/ENCFF001NXW.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXX bigBed narrowPeak peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKA 1466089 Michael Snyder, Stanford 993fb4f974a3bbd32ec7a36a8c21dd02 https://www.encodeproject.org/files/ENCFF001NXX/@@download/ENCFF001NXX.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXY bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NYK 331468446 Michael Snyder, Stanford 5f87f46254ae0f00036e2f50499b2191 https://www.encodeproject.org/files/ENCFF001NXY/@@download/ENCFF001NXY.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXZ bigWig signal ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NXW, ENCFF001NXY 225072997 Michael Snyder, Stanford 28a76d5b049ed098dda2f55410cebb2e https://www.encodeproject.org/files/ENCFF001NXZ/@@download/ENCFF001NXZ.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYF fastq reads ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 866315037 Michael Snyder, Stanford 25f04432deee10aa54c04972f40529ce https://www.encodeproject.org/files/ENCFF001NYF/@@download/ENCFF001NYF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NYK fastq reads ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1057296684 Michael Snyder, Stanford 4b0a5dcfa3d26a01edc05f324216fd18 https://www.encodeproject.org/files/ENCFF001NYK/@@download/ENCFF001NYK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NUK/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKA bed narrowPeak peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NXW, ENCFF001NXY 611523 Michael Snyder, Stanford 37d4f4f09132ec7d6312a0fe9df1aec8 https://www.encodeproject.org/files/ENCFF001YKA/@@download/ENCFF001YKA.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF453NMH bam unfiltered alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYF, ENCFF018NEO 901394804 ENCODE Processing Pipeline 3b0558de7cce30b8cdd9dbb512e9f0ae https://www.encodeproject.org/files/ENCFF453NMH/@@download/ENCFF453NMH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF046OEZ bam unfiltered alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYK, ENCFF018NEO 1170208689 ENCODE Processing Pipeline c52c12e478466faaa7b374f581739a9a https://www.encodeproject.org/files/ENCFF046OEZ/@@download/ENCFF046OEZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF292MTG bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYF, ENCFF018NEO 551306438 ENCODE Processing Pipeline 633b2fe046f4700ae7f2a3d7226c93e9 https://www.encodeproject.org/files/ENCFF292MTG/@@download/ENCFF292MTG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF202HIS bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYK, ENCFF018NEO 729223411 ENCODE Processing Pipeline 418117eae79323fda1ba05fd232c4b99 https://www.encodeproject.org/files/ENCFF202HIS/@@download/ENCFF202HIS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF371KZM bigWig signal p-value ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF202HIS, ENCFF292MTG 381674891 ENCODE Processing Pipeline bd38d353f35a54d0e5145de63409da70 https://www.encodeproject.org/files/ENCFF371KZM/@@download/ENCFF371KZM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF946VXI bigWig fold change over control ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF292MTG 183783576 ENCODE Processing Pipeline ee45ba10e6a9bcefbe4948ba66cfef42 https://www.encodeproject.org/files/ENCFF946VXI/@@download/ENCFF946VXI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF577NFA bigWig signal p-value ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF292MTG 337147514 ENCODE Processing Pipeline 1f3f6db0c613a4291bdd9a278c85b37c https://www.encodeproject.org/files/ENCFF577NFA/@@download/ENCFF577NFA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF504BVE bigWig signal p-value ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF202HIS 296442719 ENCODE Processing Pipeline 6378279c90433b501580f16d69ca161f https://www.encodeproject.org/files/ENCFF504BVE/@@download/ENCFF504BVE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF659FDY bed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF017EBX, ENCFF292MTG 6585025 ENCODE Processing Pipeline 6e9bdce05e59046df7f598bb98752d4f https://www.encodeproject.org/files/ENCFF659FDY/@@download/ENCFF659FDY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF906BFI bigWig fold change over control ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF202HIS, ENCFF292MTG 383791582 ENCODE Processing Pipeline a497c7fab882d5d711bf80dec971683f https://www.encodeproject.org/files/ENCFF906BFI/@@download/ENCFF906BFI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF486SVT bigWig fold change over control ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF202HIS 275292784 ENCODE Processing Pipeline 6bd76b6be2633875ef8074aaa6bad91e https://www.encodeproject.org/files/ENCFF486SVT/@@download/ENCFF486SVT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF547BST bed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF017EBX, ENCFF202HIS 6981179 ENCODE Processing Pipeline 0214ed7df3f15532c96787f92aa64b7c https://www.encodeproject.org/files/ENCFF547BST/@@download/ENCFF547BST.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF508QRL bigBed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF547BST 11187838 ENCODE Processing Pipeline 4e56aac0ce71d48b5e172009cb47d906 https://www.encodeproject.org/files/ENCFF508QRL/@@download/ENCFF508QRL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF847XVX bigBed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF659FDY 11349384 ENCODE Processing Pipeline a21427f834e28f876acd7fc8ef13a462 https://www.encodeproject.org/files/ENCFF847XVX/@@download/ENCFF847XVX.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF736BXZ bed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF017EBX, ENCFF202HIS, ENCFF292MTG 7092103 ENCODE Processing Pipeline 6d446dce56d3cd70a6f438ee407e2d5e https://www.encodeproject.org/files/ENCFF736BXZ/@@download/ENCFF736BXZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF461SMQ bed narrowPeak conservative idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547BST, ENCFF547MET, ENCFF659FDY, ENCFF736BXZ 501756 ENCODE Processing Pipeline 09430dff80c13249f1e4638ae95ff4e5 https://www.encodeproject.org/files/ENCFF461SMQ/@@download/ENCFF461SMQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF900WCA bigBed narrowPeak peaks and background as input for IDR ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF736BXZ 11178865 ENCODE Processing Pipeline e75671811f68ac6f636dec5d98d5f373 https://www.encodeproject.org/files/ENCFF900WCA/@@download/ENCFF900WCA.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF329WNY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF461SMQ 1016138 ENCODE Processing Pipeline 483010f89f97f9057a3c5371fa9133ad https://www.encodeproject.org/files/ENCFF329WNY/@@download/ENCFF329WNY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF291UPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF228IWF 1112579 ENCODE Processing Pipeline 30618754718be61f9e77de70ac0ede1b https://www.encodeproject.org/files/ENCFF291UPL/@@download/ENCFF291UPL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF228IWF bed narrowPeak optimal idr thresholded peaks ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF547BST, ENCFF547MET, ENCFF659FDY, ENCFF736BXZ 555351 ENCODE Processing Pipeline c0f83d3803366ad5ff188031f7502e2c https://www.encodeproject.org/files/ENCFF228IWF/@@download/ENCFF228IWF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF107WXS fastq reads ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2553719347 Bing Ren, UCSD c1a006506da69f185dfa566cb0baffeb SRA:SRR3652914 https://www.encodeproject.org/files/ENCFF107WXS/@@download/ENCFF107WXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF710GYU/ released mild to moderate bottlenecking, inconsistent platforms ENCFF594YET fastq reads ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1957209452 Bing Ren, UCSD 4595a2ae9dc01be6df6660368e21f9cd SRA:SRR3652913 https://www.encodeproject.org/files/ENCFF594YET/@@download/ENCFF594YET.fastq.gz Illumina HiSeq 2000 /files/ENCFF292YPK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF047PVZ bam alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF107WXS, ENCFF806TVZ 2051771500 ENCODE Processing Pipeline cb8f55dfc4ea8ac08a3b06f27f621989 https://www.encodeproject.org/files/ENCFF047PVZ/@@download/ENCFF047PVZ.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF605FAS bam alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF594YET, ENCFF806TVZ 1673484546 ENCODE Processing Pipeline 719b7fbf1c2c8ab16d9bf08889b93aed https://www.encodeproject.org/files/ENCFF605FAS/@@download/ENCFF605FAS.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF238CIJ bed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF047PVZ, ENCFF592WTG 1900169 ENCODE Processing Pipeline 70f2e05eeb2a73a02680e337b59ed804 https://www.encodeproject.org/files/ENCFF238CIJ/@@download/ENCFF238CIJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF053LQO bed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF476GUX, ENCFF605FAS 1678493 ENCODE Processing Pipeline 26add4ee817986e34c82e7433ad006e6 https://www.encodeproject.org/files/ENCFF053LQO/@@download/ENCFF053LQO.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF818SDU bed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF047PVZ, ENCFF476GUX, ENCFF592WTG, ENCFF605FAS 2219341 ENCODE Processing Pipeline 155a7ffe7b3ae5936f72bd249d4843cc https://www.encodeproject.org/files/ENCFF818SDU/@@download/ENCFF818SDU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF262TWX bigBed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF238CIJ 5302127 ENCODE Processing Pipeline 3223aec47d1fcbe685ec27604dabe32e https://www.encodeproject.org/files/ENCFF262TWX/@@download/ENCFF262TWX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF072ZXT bigBed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF053LQO 4694174 ENCODE Processing Pipeline e5a0a9bfe180e74b5a31ba5ee285a2c5 https://www.encodeproject.org/files/ENCFF072ZXT/@@download/ENCFF072ZXT.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF286EDV bigBed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF818SDU 6032203 ENCODE Processing Pipeline 62f1077ebf6b19fbcf5ca0667c5c9a92 https://www.encodeproject.org/files/ENCFF286EDV/@@download/ENCFF286EDV.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF424DFG bigWig signal p-value ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF047PVZ, ENCFF592WTG 738848650 ENCODE Processing Pipeline ad7f05f458d4bce4a07d4a738007b82a https://www.encodeproject.org/files/ENCFF424DFG/@@download/ENCFF424DFG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF960CHI bigWig signal p-value ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF476GUX, ENCFF605FAS 525844163 ENCODE Processing Pipeline db8d31b8474257a89767d389068ab290 https://www.encodeproject.org/files/ENCFF960CHI/@@download/ENCFF960CHI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF457ENR bigWig signal p-value ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF047PVZ, ENCFF476GUX, ENCFF592WTG, ENCFF605FAS 1024394443 ENCODE Processing Pipeline 6477472b321d8993e47364c3e7a62e04 https://www.encodeproject.org/files/ENCFF457ENR/@@download/ENCFF457ENR.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF603OBH bigWig fold change over control ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF047PVZ, ENCFF592WTG 737455471 ENCODE Processing Pipeline b23b9e612f7e69ab4ebcc053d7a99785 https://www.encodeproject.org/files/ENCFF603OBH/@@download/ENCFF603OBH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF604JKD bigWig fold change over control ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF476GUX, ENCFF605FAS 594226351 ENCODE Processing Pipeline 1cfb6f92310579328929ce539abba682 https://www.encodeproject.org/files/ENCFF604JKD/@@download/ENCFF604JKD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF205FMJ bigWig fold change over control ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF047PVZ, ENCFF476GUX, ENCFF592WTG, ENCFF605FAS 1249079781 ENCODE Processing Pipeline a8b7626a6d13c2537289086a2384ee14 https://www.encodeproject.org/files/ENCFF205FMJ/@@download/ENCFF205FMJ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF743USI bigBed narrowPeak replicated peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF967JQX 3646137 ENCODE Processing Pipeline cb37ef8616f229cac818e4a9cec835f9 https://www.encodeproject.org/files/ENCFF743USI/@@download/ENCFF743USI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF967JQX bed narrowPeak replicated peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF053LQO, ENCFF238CIJ, ENCFF818SDU 1719773 ENCODE Processing Pipeline b3b79de3f6428bffe323be1cfda45a06 https://www.encodeproject.org/files/ENCFF967JQX/@@download/ENCFF967JQX.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF027WPT bam unfiltered alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF594YET 2328269209 ENCODE Processing Pipeline 2362d19a4b45e7828b8feb4861b52803 https://www.encodeproject.org/files/ENCFF027WPT/@@download/ENCFF027WPT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF782HUV bam unfiltered alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF107WXS 2997566454 ENCODE Processing Pipeline 0bf41489fc43bc8dff91a5bd006fe9ef https://www.encodeproject.org/files/ENCFF782HUV/@@download/ENCFF782HUV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF831JKI bam alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF594YET 1673198881 ENCODE Processing Pipeline 7d4b79c329c9f0e807346a49ea2955e5 https://www.encodeproject.org/files/ENCFF831JKI/@@download/ENCFF831JKI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF650CDV bam alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF107WXS 2051393783 ENCODE Processing Pipeline 9871990296aee5c12dc2a73b179e7f73 https://www.encodeproject.org/files/ENCFF650CDV/@@download/ENCFF650CDV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF437OLA bed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF627RIT, ENCFF650CDV 1768987 ENCODE Processing Pipeline 033c4c5afefa687952ac05f0cb441145 https://www.encodeproject.org/files/ENCFF437OLA/@@download/ENCFF437OLA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF387CON bed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF831JKI 1722921 ENCODE Processing Pipeline 60131ffa7d9abc84bde1f87ddd79c52d https://www.encodeproject.org/files/ENCFF387CON/@@download/ENCFF387CON.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF205XSA bed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF627RIT, ENCFF650CDV, ENCFF831JKI 2287761 ENCODE Processing Pipeline df4527f3516f5b912f3538a6735df4eb https://www.encodeproject.org/files/ENCFF205XSA/@@download/ENCFF205XSA.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF169EKT bigBed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF437OLA 4951718 ENCODE Processing Pipeline 28ab40e031024547760cc3ebdaf84067 https://www.encodeproject.org/files/ENCFF169EKT/@@download/ENCFF169EKT.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF269NDP bigBed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF387CON 4812834 ENCODE Processing Pipeline d934459038d1fa0d1fc37f7915522021 https://www.encodeproject.org/files/ENCFF269NDP/@@download/ENCFF269NDP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF606JVS bigBed narrowPeak peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF205XSA 6172426 ENCODE Processing Pipeline 79a82224ac7f29d2d58eb9f2948a0194 https://www.encodeproject.org/files/ENCFF606JVS/@@download/ENCFF606JVS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF632GFP bigWig signal p-value ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF627RIT, ENCFF650CDV 569094674 ENCODE Processing Pipeline 11e59e7df98ce859b4abb1610adb5991 https://www.encodeproject.org/files/ENCFF632GFP/@@download/ENCFF632GFP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF717IRL bigWig signal p-value ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF831JKI 570246373 ENCODE Processing Pipeline 96838e8dd9e6d88bdd3349b4ef70ea65 https://www.encodeproject.org/files/ENCFF717IRL/@@download/ENCFF717IRL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF195SBD bigWig signal p-value ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF627RIT, ENCFF650CDV, ENCFF831JKI 938595589 ENCODE Processing Pipeline 64bd37382374f48e146f39c7bb8a8718 https://www.encodeproject.org/files/ENCFF195SBD/@@download/ENCFF195SBD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF455HPY bigWig fold change over control ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF627RIT, ENCFF650CDV 735581314 ENCODE Processing Pipeline f2eca4a8e1d4ff836d16f0fca3b194aa https://www.encodeproject.org/files/ENCFF455HPY/@@download/ENCFF455HPY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF546ZZB bigWig fold change over control ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF285XPR, ENCFF831JKI 634801395 ENCODE Processing Pipeline d5e58fbd36b75b8a86f6d093f16f116a https://www.encodeproject.org/files/ENCFF546ZZB/@@download/ENCFF546ZZB.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF297RMH bigWig fold change over control ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF285XPR, ENCFF627RIT, ENCFF650CDV, ENCFF831JKI 1256452864 ENCODE Processing Pipeline 672e6b494247af6df6bd4d55883e126d https://www.encodeproject.org/files/ENCFF297RMH/@@download/ENCFF297RMH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF083AAZ bed narrowPeak replicated peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF205XSA, ENCFF387CON, ENCFF437OLA 1701284 ENCODE Processing Pipeline 355eb6f0eec01c4873e631fc60e3a537 https://www.encodeproject.org/files/ENCFF083AAZ/@@download/ENCFF083AAZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF998IFG bigBed narrowPeak replicated peaks ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF083AAZ 3605353 ENCODE Processing Pipeline f0fdcac0b58bbb92b730a6a30f661a31 https://www.encodeproject.org/files/ENCFF998IFG/@@download/ENCFF998IFG.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001KXL bam alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KXW 389355370 Bing Ren, UCSD d712e8a1b57e70211a30b879ee9fefb7 https://www.encodeproject.org/files/ENCFF001KXL/@@download/ENCFF001KXL.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXM bigBed broadPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZK 314310 Bing Ren, UCSD 72917638f47c6098e53e2b833f8de7e9 https://www.encodeproject.org/files/ENCFF001KXM/@@download/ENCFF001KXM.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXO bam alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KXX 419287740 Bing Ren, UCSD acadf8d3455b3ce4d4f786cc7d1ce38a https://www.encodeproject.org/files/ENCFF001KXO/@@download/ENCFF001KXO.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXP bigWig signal ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KXL, ENCFF001KXO 20807665 Bing Ren, UCSD 8eebc08a7ebd318f45750308012f587e https://www.encodeproject.org/files/ENCFF001KXP/@@download/ENCFF001KXP.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXW fastq reads ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 503978520 Bing Ren, UCSD 57405b521627a3cb4a996ee84e7ea310 https://www.encodeproject.org/files/ENCFF001KXW/@@download/ENCFF001KXW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXX fastq reads ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 554723588 Bing Ren, UCSD 2bcf6821500cc6bf0e827c512e5d9597 https://www.encodeproject.org/files/ENCFF001KXX/@@download/ENCFF001KXX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF001XZK bed broadPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KXL, ENCFF001KXO 202238 Bing Ren, UCSD 170a72f0bf31c2d7f0c8c014d88120a1 https://www.encodeproject.org/files/ENCFF001XZK/@@download/ENCFF001XZK.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF984ZDK bam unfiltered alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXX, ENCFF018NEO 536434386 ENCODE Processing Pipeline 0dc3cf5fee985ca4fa4116950c658f77 https://www.encodeproject.org/files/ENCFF984ZDK/@@download/ENCFF984ZDK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF103CTM bam unfiltered alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXW, ENCFF018NEO 468069566 ENCODE Processing Pipeline 023611d3138d687777b9ca62ec87242f https://www.encodeproject.org/files/ENCFF103CTM/@@download/ENCFF103CTM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF024QAB bam alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXX, ENCFF018NEO 338051234 ENCODE Processing Pipeline c16862ac736a756b492bc12b2ac0d6a5 https://www.encodeproject.org/files/ENCFF024QAB/@@download/ENCFF024QAB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF795CCA bam alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXW, ENCFF018NEO 293126714 ENCODE Processing Pipeline cd63830ba89e9f5bfe3fab6dfb815ff9 https://www.encodeproject.org/files/ENCFF795CCA/@@download/ENCFF795CCA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF048CDX bed narrowPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF795CCA 579707 ENCODE Processing Pipeline 81e1f7d130f99db3a37950fbc9f92129 https://www.encodeproject.org/files/ENCFF048CDX/@@download/ENCFF048CDX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF836IBU bed narrowPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF024QAB, ENCFF283CTW, ENCFF347BCY, ENCFF795CCA 651245 ENCODE Processing Pipeline 7e896d533d8e745213b64652e180e7e6 https://www.encodeproject.org/files/ENCFF836IBU/@@download/ENCFF836IBU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF594ZUJ bed narrowPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF024QAB, ENCFF347BCY 572685 ENCODE Processing Pipeline dddc335687adee3fe74ef301b6a688c0 https://www.encodeproject.org/files/ENCFF594ZUJ/@@download/ENCFF594ZUJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF583GSU bigBed narrowPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF048CDX 1801036 ENCODE Processing Pipeline 1749bb869f68ff6da1e787808018ae6c https://www.encodeproject.org/files/ENCFF583GSU/@@download/ENCFF583GSU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF688MMY bigBed narrowPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF594ZUJ 1812602 ENCODE Processing Pipeline 7843151efc95678723f5078d3cc41eca https://www.encodeproject.org/files/ENCFF688MMY/@@download/ENCFF688MMY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF792BCL bigBed narrowPeak peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF836IBU 1871469 ENCODE Processing Pipeline 1eb5f0a136f88e0f6fdeba3a02f9eb68 https://www.encodeproject.org/files/ENCFF792BCL/@@download/ENCFF792BCL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF260DFS bigWig signal p-value ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF024QAB, ENCFF283CTW, ENCFF347BCY, ENCFF795CCA 331599918 ENCODE Processing Pipeline db701297545492b52e1799b22b711873 https://www.encodeproject.org/files/ENCFF260DFS/@@download/ENCFF260DFS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF571HVM bigWig signal p-value ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF795CCA 187050079 ENCODE Processing Pipeline bce78e06e57346ef8af91fb266ce7da4 https://www.encodeproject.org/files/ENCFF571HVM/@@download/ENCFF571HVM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF419RBN bigWig fold change over control ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF795CCA 83710462 ENCODE Processing Pipeline c86bcd10796791f3c3c7928c8ebefb30 https://www.encodeproject.org/files/ENCFF419RBN/@@download/ENCFF419RBN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF704DSZ bigWig signal p-value ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF024QAB, ENCFF347BCY 202146847 ENCODE Processing Pipeline 0a11646aa4361bb62d2e4d7b94f04024 https://www.encodeproject.org/files/ENCFF704DSZ/@@download/ENCFF704DSZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF928DUD bigWig fold change over control ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF024QAB, ENCFF347BCY 113311311 ENCODE Processing Pipeline 9f17af2a8f8c35fd203029855f42113c https://www.encodeproject.org/files/ENCFF928DUD/@@download/ENCFF928DUD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF674JZY bed narrowPeak replicated peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF048CDX, ENCFF594ZUJ, ENCFF836IBU 734931 ENCODE Processing Pipeline 2089258eadc28134686e968daa0cb0e1 https://www.encodeproject.org/files/ENCFF674JZY/@@download/ENCFF674JZY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF159OSZ bigBed narrowPeak replicated peaks ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF674JZY 1644656 ENCODE Processing Pipeline 40d031454fcb2d781d3a4da8b2938ac8 https://www.encodeproject.org/files/ENCFF159OSZ/@@download/ENCFF159OSZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF810PIW bigWig fold change over control ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF024QAB, ENCFF283CTW, ENCFF347BCY, ENCFF795CCA 186729628 ENCODE Processing Pipeline 7cee9bf79e6110fa6d28cbde0680c745 https://www.encodeproject.org/files/ENCFF810PIW/@@download/ENCFF810PIW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF001LQQ bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LQY 553618471 Bing Ren, UCSD 565290d2c1af09a65de30f4abcaa472e https://www.encodeproject.org/files/ENCFF001LQQ/@@download/ENCFF001LQQ.bam mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQS bigBed broadPeak peaks ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAY 464421 Bing Ren, UCSD 2c821a005a29886dfda31c7e20896ae2 https://www.encodeproject.org/files/ENCFF001LQS/@@download/ENCFF001LQS.bigBed mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQT bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LRE 579883819 Bing Ren, UCSD f17ee9e012d6f5a5e2d8a711c7e49da0 https://www.encodeproject.org/files/ENCFF001LQT/@@download/ENCFF001LQT.bam mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQX bigWig signal ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LQQ, ENCFF001LQT 54492570 Bing Ren, UCSD 92133721884bb65a9a82a4e7e7008b98 https://www.encodeproject.org/files/ENCFF001LQX/@@download/ENCFF001LQX.bigWig mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001LQY fastq reads ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 30 single-ended 526337920 Bing Ren, UCSD 8948a3cedaaaf925cd4fcf3543189c7f https://www.encodeproject.org/files/ENCFF001LQY/@@download/ENCFF001LQY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KVR/ released mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length insufficient read depth, insufficient read length extremely low read depth ENCFF001LRE fastq reads ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 30 single-ended 612267265 Bing Ren, UCSD 3c7ecddc91aeddb64776ac104667427d https://www.encodeproject.org/files/ENCFF001LRE/@@download/ENCFF001LRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KWE/ released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF001YAY bed broadPeak peaks ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LQQ, ENCFF001LQT 323502 Bing Ren, UCSD 016f8c507fc27e2063b8dd6f5617402f https://www.encodeproject.org/files/ENCFF001YAY/@@download/ENCFF001YAY.bed.gz mm9 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF497WZO bam unfiltered alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRE, ENCFF018NEO 560518743 ENCODE Processing Pipeline 77b9eecd6a1886d0f63ea8675289392b https://www.encodeproject.org/files/ENCFF497WZO/@@download/ENCFF497WZO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF581CEH bam unfiltered alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LQY, ENCFF018NEO 607380921 ENCODE Processing Pipeline 5ea99b2f0c1b2a07430a8e257f20f5e7 https://www.encodeproject.org/files/ENCFF581CEH/@@download/ENCFF581CEH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF137QSX bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRE, ENCFF018NEO 55417723 ENCODE Processing Pipeline f3528de15ec5be78e7e549d22878b10b https://www.encodeproject.org/files/ENCFF137QSX/@@download/ENCFF137QSX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF409DKD bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LQY, ENCFF018NEO 356592575 ENCODE Processing Pipeline 9d0fe55ecb2328ebcb7afb0034933019 https://www.encodeproject.org/files/ENCFF409DKD/@@download/ENCFF409DKD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF285EZB fastq reads ENCSR718KRA ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 1 50 single-ended 1479815427 Richard Myers, HAIB e398ec403746836059acb79589cd4172 SRA:SRR5111992 https://www.encodeproject.org/files/ENCFF285EZB/@@download/ENCFF285EZB.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF209YOD bam unfiltered alignments ENCSR718KRA ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 ENCFF018NEO, ENCFF285EZB 1652762895 ENCODE Processing Pipeline c0699df7fea678bad3b53a4d38893f1f https://www.encodeproject.org/files/ENCFF209YOD/@@download/ENCFF209YOD.bam mm10 released insufficient read depth for broad peaks control ENCFF251CDJ bam alignments ENCSR718KRA ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF285EZB 1249232106 ENCODE Processing Pipeline 6106dea486dce9dc87249ca785ca47fd https://www.encodeproject.org/files/ENCFF251CDJ/@@download/ENCFF251CDJ.bam mm10 released insufficient read depth for broad peaks control ENCFF001KLP bam alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KLX 815104894 Bing Ren, UCSD 50caba6051300e8eebdcfd99b89f0a3d https://www.encodeproject.org/files/ENCFF001KLP/@@download/ENCFF001KLP.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001KLQ bigBed broadPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXU 607541 Bing Ren, UCSD bf011a3e09ac127d4f5676472eea3c98 https://www.encodeproject.org/files/ENCFF001KLQ/@@download/ENCFF001KLQ.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001KLR bam alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KMB 831528542 Bing Ren, UCSD 08721b7838c39972814f177d6d3895fa https://www.encodeproject.org/files/ENCFF001KLR/@@download/ENCFF001KLR.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001KLT bigWig signal ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KLP, ENCFF001KLR 54231312 Bing Ren, UCSD 18db7dca44ff54c7666112fec897a3a9 https://www.encodeproject.org/files/ENCFF001KLT/@@download/ENCFF001KLT.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001KLX fastq reads ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 784269144 Bing Ren, UCSD 46461b182f00ca7fa79e3db35dd128e7 https://www.encodeproject.org/files/ENCFF001KLX/@@download/ENCFF001KLX.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNX/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001KMB fastq reads ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 813928506 Bing Ren, UCSD 9b5b9f42daf8e0e3f05c48fdc8a347ed https://www.encodeproject.org/files/ENCFF001KMB/@@download/ENCFF001KMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNY/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001XXU bed broadPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KLP, ENCFF001KLR 370127 Bing Ren, UCSD 0cc6b190371aaa192778e5bddc9a80e3 https://www.encodeproject.org/files/ENCFF001XXU/@@download/ENCFF001XXU.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF753MAN bam unfiltered alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLX, ENCFF018NEO 853370953 ENCODE Processing Pipeline 82a5127b10264aed543c338d56a8b832 https://www.encodeproject.org/files/ENCFF753MAN/@@download/ENCFF753MAN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF089ZBY bam unfiltered alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMB, ENCFF018NEO 891053658 ENCODE Processing Pipeline 02427c6278134f2f99af2677a948f257 https://www.encodeproject.org/files/ENCFF089ZBY/@@download/ENCFF089ZBY.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF610AAL bam alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLX, ENCFF018NEO 541721412 ENCODE Processing Pipeline 4c2a11e261db4471abbfaeefc8d406a8 https://www.encodeproject.org/files/ENCFF610AAL/@@download/ENCFF610AAL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF988ADO bam alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMB, ENCFF018NEO 599069381 ENCODE Processing Pipeline db7b7db7a942dcd7c0f80221e0906ffa https://www.encodeproject.org/files/ENCFF988ADO/@@download/ENCFF988ADO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF005NON bed narrowPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF610AAL 1163324 ENCODE Processing Pipeline 8e63bf71c9bd1e8d8ab0104338bd2b20 https://www.encodeproject.org/files/ENCFF005NON/@@download/ENCFF005NON.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF869YOW bed narrowPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF988ADO 1228538 ENCODE Processing Pipeline 8d11763e088a37681dae140a05855493 https://www.encodeproject.org/files/ENCFF869YOW/@@download/ENCFF869YOW.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF674YFD bigBed narrowPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF005NON 3249407 ENCODE Processing Pipeline 80b04787384674c6db06affecbd2460b https://www.encodeproject.org/files/ENCFF674YFD/@@download/ENCFF674YFD.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF397EHY bed narrowPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF610AAL, ENCFF988ADO 1115274 ENCODE Processing Pipeline 1436b523c864ced864cc3937a58498e0 https://www.encodeproject.org/files/ENCFF397EHY/@@download/ENCFF397EHY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF342ZWV bigBed narrowPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF397EHY 3064250 ENCODE Processing Pipeline 6147d89ec4b7ffe59fa7c965aa82849b https://www.encodeproject.org/files/ENCFF342ZWV/@@download/ENCFF342ZWV.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF098YUZ bigBed narrowPeak peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF869YOW 3555656 ENCODE Processing Pipeline 3c656d16f60d2f73ac7abb55182ac057 https://www.encodeproject.org/files/ENCFF098YUZ/@@download/ENCFF098YUZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF777UWE bigWig signal p-value ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF610AAL 293245276 ENCODE Processing Pipeline ce55bbcbfe27e9c84bda56bc6e8fce6e https://www.encodeproject.org/files/ENCFF777UWE/@@download/ENCFF777UWE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF869XMV bigWig signal p-value ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF988ADO 362202084 ENCODE Processing Pipeline 242e88cab1c1347843fc8146b68e5dc5 https://www.encodeproject.org/files/ENCFF869XMV/@@download/ENCFF869XMV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF093IVF bigWig signal p-value ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF610AAL, ENCFF988ADO 397211925 ENCODE Processing Pipeline 8babf871ee76477f0055edd910710475 https://www.encodeproject.org/files/ENCFF093IVF/@@download/ENCFF093IVF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF096PPB bigWig fold change over control ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF610AAL 241984024 ENCODE Processing Pipeline d7e8a359ad2613cb3508584f78af8488 https://www.encodeproject.org/files/ENCFF096PPB/@@download/ENCFF096PPB.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF513SQG bigWig fold change over control ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF988ADO 272346625 ENCODE Processing Pipeline 839234231f31032c851116a0cee7dcdb https://www.encodeproject.org/files/ENCFF513SQG/@@download/ENCFF513SQG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF265TCP bigWig fold change over control ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF610AAL, ENCFF988ADO 410969212 ENCODE Processing Pipeline 9f5a24bda21611299a0c78cb32ff0791 https://www.encodeproject.org/files/ENCFF265TCP/@@download/ENCFF265TCP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF787EAZ bed narrowPeak replicated peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF005NON, ENCFF397EHY, ENCFF869YOW 1303276 ENCODE Processing Pipeline 916e476f6120a99c62148622560f2907 https://www.encodeproject.org/files/ENCFF787EAZ/@@download/ENCFF787EAZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF706LIL bigBed narrowPeak replicated peaks ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF787EAZ 2637996 ENCODE Processing Pipeline 43c60054e665aadc538a5593c0f74c64 https://www.encodeproject.org/files/ENCFF706LIL/@@download/ENCFF706LIL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001LPH bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPM 254630636 Bing Ren, UCSD a92e3f76e06848441e034c48f0df302d https://www.encodeproject.org/files/ENCFF001LPH/@@download/ENCFF001LPH.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001LPI bigBed broadPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAU 279471 Bing Ren, UCSD d1cb8c080bc04648cdf8dbf52a849f82 https://www.encodeproject.org/files/ENCFF001LPI/@@download/ENCFF001LPI.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001LPJ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPS 873530637 Bing Ren, UCSD 1b674e28c973deb194a0b427c4eb5c1f https://www.encodeproject.org/files/ENCFF001LPJ/@@download/ENCFF001LPJ.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001LPL bigWig signal ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPH, ENCFF001LPJ 73190584 Bing Ren, UCSD 9e755943847aa96a7109d0354a516815 https://www.encodeproject.org/files/ENCFF001LPL/@@download/ENCFF001LPL.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001LPM fastq reads ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 359116018 Bing Ren, UCSD 97ccc3f41ae802b4224e9a3eea899cda https://www.encodeproject.org/files/ENCFF001LPM/@@download/ENCFF001LPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSH/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001LPS fastq reads ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1220774328 Bing Ren, UCSD 7606703b05bbb6bbde0286b898ff08c4 https://www.encodeproject.org/files/ENCFF001LPS/@@download/ENCFF001LPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSJ/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001YAU bed broadPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPH, ENCFF001LPJ 170766 Bing Ren, UCSD 009162122786abe5a9382ffa4d9325b5 https://www.encodeproject.org/files/ENCFF001YAU/@@download/ENCFF001YAU.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF841PCE bam unfiltered alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 387835816 ENCODE Processing Pipeline 5ca4b8b6de0109bc63dacea1dfca8cf2 https://www.encodeproject.org/files/ENCFF841PCE/@@download/ENCFF841PCE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF991YKF bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 201792282 ENCODE Processing Pipeline 83a881f355236d32ffd74101e2fb2fcb https://www.encodeproject.org/files/ENCFF991YKF/@@download/ENCFF991YKF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF609TGE bam unfiltered alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 1310128134 ENCODE Processing Pipeline 135379ff952dd0ba9d533e2ba4298120 https://www.encodeproject.org/files/ENCFF609TGE/@@download/ENCFF609TGE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF385VIZ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 711917724 ENCODE Processing Pipeline 97516ef8397618e4604908cc73ac5a62 https://www.encodeproject.org/files/ENCFF385VIZ/@@download/ENCFF385VIZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF057RBI bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 156590895 ENCODE Processing Pipeline ffaab7c8bd3b545b02000acc33cf134f https://www.encodeproject.org/files/ENCFF057RBI/@@download/ENCFF057RBI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF521NWX bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 335931215 ENCODE Processing Pipeline 45b19a84605bc73947e777da3cc946de https://www.encodeproject.org/files/ENCFF521NWX/@@download/ENCFF521NWX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF991XOA bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 406353955 ENCODE Processing Pipeline e5fef89a2180b435f8a7d51c919a9e77 https://www.encodeproject.org/files/ENCFF991XOA/@@download/ENCFF991XOA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF870ZXD bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 499736750 ENCODE Processing Pipeline a9ca5343f7bd126ebda885ef3fc6e074 https://www.encodeproject.org/files/ENCFF870ZXD/@@download/ENCFF870ZXD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF473UHO bed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 2822090 ENCODE Processing Pipeline 67ce7392277b46ac3ffa37b5371844bd https://www.encodeproject.org/files/ENCFF473UHO/@@download/ENCFF473UHO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF825DDG bed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 5944125 ENCODE Processing Pipeline 10d704ebe066f0ce0171281681daf4b8 https://www.encodeproject.org/files/ENCFF825DDG/@@download/ENCFF825DDG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF086FYL bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 389351901 ENCODE Processing Pipeline 16039ef4e45c593f0d8047f2d69990e6 https://www.encodeproject.org/files/ENCFF086FYL/@@download/ENCFF086FYL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF331JEE bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 456834258 ENCODE Processing Pipeline 0d7a5d43010480a2f906f762a26e2e8f https://www.encodeproject.org/files/ENCFF331JEE/@@download/ENCFF331JEE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF687MGE bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF143RHK 473131 ENCODE Processing Pipeline 9a0f82c746bcafc669adb1b4cd566d6c https://www.encodeproject.org/files/ENCFF687MGE/@@download/ENCFF687MGE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF070DKG bigBed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF825DDG 13053431 ENCODE Processing Pipeline f3f6be393ea15b82855ff8e88487c350 https://www.encodeproject.org/files/ENCFF070DKG/@@download/ENCFF070DKG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF800MDD bigBed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF910QVG 13090646 ENCODE Processing Pipeline 4ced16ca52f644986f428cb44e5870d3 https://www.encodeproject.org/files/ENCFF800MDD/@@download/ENCFF800MDD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF143RHK bed narrowPeak optimal idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF473UHO, ENCFF547MET, ENCFF825DDG, ENCFF910QVG 233522 ENCODE Processing Pipeline 8193beedd91a6a28ea77b25367df8d14 https://www.encodeproject.org/files/ENCFF143RHK/@@download/ENCFF143RHK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF910QVG bed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 6400076 ENCODE Processing Pipeline 06cf7f7b48971c3d95ddb26ea663cf84 https://www.encodeproject.org/files/ENCFF910QVG/@@download/ENCFF910QVG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF922API bed narrowPeak conservative idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF473UHO, ENCFF547MET, ENCFF825DDG, ENCFF910QVG 212907 ENCODE Processing Pipeline 5b745f3e8940be6370c411fc2e4dfaae https://www.encodeproject.org/files/ENCFF922API/@@download/ENCFF922API.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF970FHD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF922API 443579 ENCODE Processing Pipeline c831c9014c29c112bcf039dd2e396f3d https://www.encodeproject.org/files/ENCFF970FHD/@@download/ENCFF970FHD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF620YDJ bigBed narrowPeak peaks and background as input for IDR ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF473UHO 6253999 ENCODE Processing Pipeline d0819d561a53a790c5cff89e8a59e4aa https://www.encodeproject.org/files/ENCFF620YDJ/@@download/ENCFF620YDJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF001LPX bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LQH 779560724 Bing Ren, UCSD 70c73b61360a9ed40d2e4131035e7c65 https://www.encodeproject.org/files/ENCFF001LPX/@@download/ENCFF001LPX.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF001LQB bigBed broadPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001YAW 320142 Bing Ren, UCSD f212e2bcfa9b18d7c1d9b4f7b535b3e6 https://www.encodeproject.org/files/ENCFF001LQB/@@download/ENCFF001LQB.bigBed mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF001LQC bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LQI 1050668299 Bing Ren, UCSD 62a6544d6598ba24c47d006afd7f5bde https://www.encodeproject.org/files/ENCFF001LQC/@@download/ENCFF001LQC.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF001LQD bigWig signal ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPX, ENCFF001LQC 63278311 Bing Ren, UCSD 36c1988fdf66619f37ad9af1571faf01 https://www.encodeproject.org/files/ENCFF001LQD/@@download/ENCFF001LQD.bigWig mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF001LQH fastq reads ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 356110106 Bing Ren, UCSD fd5bcc1d64b81df01996b75a81a33d1f https://www.encodeproject.org/files/ENCFF001LQH/@@download/ENCFF001LQH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KUJ/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, inconsistent control read length, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF001LQI fastq reads ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1482667027 Bing Ren, UCSD b912f261dd2a6b92f38de945fc532672 https://www.encodeproject.org/files/ENCFF001LQI/@@download/ENCFF001LQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KUK/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF001YAW bed broadPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF001LPX, ENCFF001LQC 202020 Bing Ren, UCSD 611038bfb280a1a93806fee8a98160c1 https://www.encodeproject.org/files/ENCFF001YAW/@@download/ENCFF001YAW.bed.gz mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF455AXI bam unfiltered alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQH, ENCFF018NEO 383881631 ENCODE Processing Pipeline c8f95447fe78bd5a3fd8d530ae0a2441 https://www.encodeproject.org/files/ENCFF455AXI/@@download/ENCFF455AXI.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF870WCT bam unfiltered alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 1610521117 ENCODE Processing Pipeline d17a798016032389794b019ef2af89a9 https://www.encodeproject.org/files/ENCFF870WCT/@@download/ENCFF870WCT.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF835GIQ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LQH, ENCFF018NEO 145463677 ENCODE Processing Pipeline 82af3942a86f7569f5580282181702e3 https://www.encodeproject.org/files/ENCFF835GIQ/@@download/ENCFF835GIQ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF023ESZ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 934355228 ENCODE Processing Pipeline 81837bcd74b867e1eadb35adde0efa69 https://www.encodeproject.org/files/ENCFF023ESZ/@@download/ENCFF023ESZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF131XVC bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 232355475 ENCODE Processing Pipeline 7f1ce8756996a14e313b7ee3d94f593e https://www.encodeproject.org/files/ENCFF131XVC/@@download/ENCFF131XVC.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF810GMY bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 579691047 ENCODE Processing Pipeline 47b19033044eb1fca4d3f2273770d6b9 https://www.encodeproject.org/files/ENCFF810GMY/@@download/ENCFF810GMY.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF075YOP bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 585476974 ENCODE Processing Pipeline 90d20cad3afd5819bb8ff3c27e2d265a https://www.encodeproject.org/files/ENCFF075YOP/@@download/ENCFF075YOP.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF008DXY bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 466738806 ENCODE Processing Pipeline 3aead480e3932a1e7a0dc72467e07ce7 https://www.encodeproject.org/files/ENCFF008DXY/@@download/ENCFF008DXY.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF039YHD bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 78627966 ENCODE Processing Pipeline 6ed10e400fef1fa927befb7b90f78b65 https://www.encodeproject.org/files/ENCFF039YHD/@@download/ENCFF039YHD.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF472ZGZ bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 531667358 ENCODE Processing Pipeline 98319b0c39ad0590c90b8802b6fb59ea https://www.encodeproject.org/files/ENCFF472ZGZ/@@download/ENCFF472ZGZ.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF893SUP bed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 1038864 ENCODE Processing Pipeline 63f8e08a553571029a12cf82af08bfc2 https://www.encodeproject.org/files/ENCFF893SUP/@@download/ENCFF893SUP.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF715VNT bed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 6236698 ENCODE Processing Pipeline f3349fb8612918bdbb5bbb6dee00cce5 https://www.encodeproject.org/files/ENCFF715VNT/@@download/ENCFF715VNT.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF023IJI bed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 6219097 ENCODE Processing Pipeline 5f1ebedb3062247909a335ddcafb6efc https://www.encodeproject.org/files/ENCFF023IJI/@@download/ENCFF023IJI.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF924WEU bigBed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF893SUP 2385482 ENCODE Processing Pipeline 9acc0dc5c2e39f79004b8d9b649e5053 https://www.encodeproject.org/files/ENCFF924WEU/@@download/ENCFF924WEU.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF805ZHC bigBed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023IJI 13271752 ENCODE Processing Pipeline 7c62447fcb12476bbb127994344b5a0b https://www.encodeproject.org/files/ENCFF805ZHC/@@download/ENCFF805ZHC.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF647ODB bigBed narrowPeak peaks and background as input for IDR ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF715VNT 13362918 ENCODE Processing Pipeline 3796c69fdec151cd7d771030cede1a92 https://www.encodeproject.org/files/ENCFF647ODB/@@download/ENCFF647ODB.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF012YET bed narrowPeak conservative idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023IJI, ENCFF547MET, ENCFF715VNT, ENCFF893SUP 202259 ENCODE Processing Pipeline 88591adf76d812bf3ab12fcdf6267e79 https://www.encodeproject.org/files/ENCFF012YET/@@download/ENCFF012YET.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF716WCD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF012YET 459930 ENCODE Processing Pipeline 216cc16f2823e6ecf1ce51e0214bfd03 https://www.encodeproject.org/files/ENCFF716WCD/@@download/ENCFF716WCD.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF609DMT bigBed narrowPeak optimal idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF319LOC 864358 ENCODE Processing Pipeline 1595fea2d66eb01dce0cc44a8d83322b https://www.encodeproject.org/files/ENCFF609DMT/@@download/ENCFF609DMT.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF319LOC bed narrowPeak optimal idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023IJI, ENCFF547MET, ENCFF715VNT, ENCFF893SUP 486999 ENCODE Processing Pipeline eed84a0b1641898c5b088f213a844092 https://www.encodeproject.org/files/ENCFF319LOC/@@download/ENCFF319LOC.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF002ALR fastq reads ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1844898228 Bing Ren, UCSD 4ac50bf91a1b13dbf5a406b0f423b8b7 SRA:SRR3652274 https://www.encodeproject.org/files/ENCFF002ALR/@@download/ENCFF002ALR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARA/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths ENCFF002ALU fastq reads ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2128765514 Bing Ren, UCSD 7f7c28fc2a2ae9432bc22668f8a7521f SRA:SRR3652273 https://www.encodeproject.org/files/ENCFF002ALU/@@download/ENCFF002ALU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQY/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF877RGB bam alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALU, ENCFF806TVZ 1117908970 ENCODE Processing Pipeline 02cee15a19d7adf1e32cb3f7d689898c https://www.encodeproject.org/files/ENCFF877RGB/@@download/ENCFF877RGB.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF907DFB bam alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALR, ENCFF806TVZ 1259920888 ENCODE Processing Pipeline 9db4be3b9fa9ad87648a9ce394b05dd6 https://www.encodeproject.org/files/ENCFF907DFB/@@download/ENCFF907DFB.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF692OMV bed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF877RGB 854327 ENCODE Processing Pipeline 6d6dc5b0c428eec5048ee5cf7b8f714c https://www.encodeproject.org/files/ENCFF692OMV/@@download/ENCFF692OMV.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF963LLN bed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF907DFB 914877 ENCODE Processing Pipeline 3f05b057cc73cbb4415a31b555e50b12 https://www.encodeproject.org/files/ENCFF963LLN/@@download/ENCFF963LLN.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF622BEZ bigBed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF692OMV 2725695 ENCODE Processing Pipeline 524ba7bf081b1d5b54f7916e76c048a4 https://www.encodeproject.org/files/ENCFF622BEZ/@@download/ENCFF622BEZ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF250TJE bed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175WRM, ENCFF184XIW, ENCFF877RGB, ENCFF907DFB 985599 ENCODE Processing Pipeline b31f038d310b0c6ccc544ea1125d8ee0 https://www.encodeproject.org/files/ENCFF250TJE/@@download/ENCFF250TJE.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF789IUV bigWig signal p-value ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF907DFB 515585875 ENCODE Processing Pipeline e26611fd2a68404eb9686bcbe2db8dfd https://www.encodeproject.org/files/ENCFF789IUV/@@download/ENCFF789IUV.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF775VXO bigBed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF963LLN 2890994 ENCODE Processing Pipeline 42e9a0d643d5ec4590ac45c03707adc0 https://www.encodeproject.org/files/ENCFF775VXO/@@download/ENCFF775VXO.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF182QBZ bigBed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF250TJE 3077593 ENCODE Processing Pipeline ed039cab7ccc71587d54eca365fe08ef https://www.encodeproject.org/files/ENCFF182QBZ/@@download/ENCFF182QBZ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF675FCX bigWig signal p-value ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF877RGB 464632896 ENCODE Processing Pipeline f45a77120867a359bd1cb3139f467ebe https://www.encodeproject.org/files/ENCFF675FCX/@@download/ENCFF675FCX.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF004WAZ bigWig signal p-value ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175WRM, ENCFF184XIW, ENCFF877RGB, ENCFF907DFB 673750523 ENCODE Processing Pipeline 9f6c465010e99ad820567a440771f4b3 https://www.encodeproject.org/files/ENCFF004WAZ/@@download/ENCFF004WAZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF659FFC bigWig fold change over control ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF877RGB 478364237 ENCODE Processing Pipeline aa67d7c31bafd44f2e16ed7304078ba9 https://www.encodeproject.org/files/ENCFF659FFC/@@download/ENCFF659FFC.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF644JRZ bigWig fold change over control ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF907DFB 605083978 ENCODE Processing Pipeline d7462effffd303fced4b2d1a2b3fbc3f https://www.encodeproject.org/files/ENCFF644JRZ/@@download/ENCFF644JRZ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF980LRB bigWig fold change over control ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175WRM, ENCFF184XIW, ENCFF877RGB, ENCFF907DFB 840422156 ENCODE Processing Pipeline c6573a89f1b108cd5b01d2e1623be94d https://www.encodeproject.org/files/ENCFF980LRB/@@download/ENCFF980LRB.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF961BLI bigBed narrowPeak replicated peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF906KKU 2286724 ENCODE Processing Pipeline 08d7dfe2b3620962986a78119e267afb https://www.encodeproject.org/files/ENCFF961BLI/@@download/ENCFF961BLI.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF906KKU bed narrowPeak replicated peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF250TJE, ENCFF692OMV, ENCFF963LLN 974874 ENCODE Processing Pipeline 888f0806e4fbbc3800ba419dfbee75ee https://www.encodeproject.org/files/ENCFF906KKU/@@download/ENCFF906KKU.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF096YSE bam unfiltered alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALU, ENCFF018NEO 1776570909 ENCODE Processing Pipeline b16e214fd31724e53a14a9b834f15839 https://www.encodeproject.org/files/ENCFF096YSE/@@download/ENCFF096YSE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF445XLO bam unfiltered alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALR, ENCFF018NEO 1989764689 ENCODE Processing Pipeline f1dc8ac2e6d4c3ca79b5bfb145be5142 https://www.encodeproject.org/files/ENCFF445XLO/@@download/ENCFF445XLO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF413VXU bam alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALU, ENCFF018NEO 868131973 ENCODE Processing Pipeline 97b3f3d1480f8e6bcc19734f74c0c2df https://www.encodeproject.org/files/ENCFF413VXU/@@download/ENCFF413VXU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF018WHT bam alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALR, ENCFF018NEO 1259679709 ENCODE Processing Pipeline f429c5788f71285decb2f8ca49c71e15 https://www.encodeproject.org/files/ENCFF018WHT/@@download/ENCFF018WHT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF510AVX bed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF413VXU, ENCFF523XKB 861235 ENCODE Processing Pipeline 8fb412fa2109858540436986c4640570 https://www.encodeproject.org/files/ENCFF510AVX/@@download/ENCFF510AVX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF415BPD bed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF018WHT, ENCFF190RFD, ENCFF523XKB 914939 ENCODE Processing Pipeline c9e04c2ddce81f23ca6b3e307ba3c9eb https://www.encodeproject.org/files/ENCFF415BPD/@@download/ENCFF415BPD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF340RLF bed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF018WHT, ENCFF190RFD, ENCFF413VXU, ENCFF523XKB 983240 ENCODE Processing Pipeline 4a7f9a201ac3957c883435661d8bb64f https://www.encodeproject.org/files/ENCFF340RLF/@@download/ENCFF340RLF.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF885PGL bigBed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF510AVX 2740440 ENCODE Processing Pipeline c1882116d209da6244c699642fe58afb https://www.encodeproject.org/files/ENCFF885PGL/@@download/ENCFF885PGL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF861BRK bigBed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF415BPD 2887459 ENCODE Processing Pipeline 42f101ef6fca0f3fa5ee8064d065133f https://www.encodeproject.org/files/ENCFF861BRK/@@download/ENCFF861BRK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF724YLK bigBed narrowPeak peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF340RLF 3055460 ENCODE Processing Pipeline 12599b578e42b629ecda85d079305313 https://www.encodeproject.org/files/ENCFF724YLK/@@download/ENCFF724YLK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF063AYZ bigWig signal p-value ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF413VXU, ENCFF523XKB 465970428 ENCODE Processing Pipeline a522ff05f44e9e9fb5752a47dfff4440 https://www.encodeproject.org/files/ENCFF063AYZ/@@download/ENCFF063AYZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF963WYB bigWig signal p-value ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF018WHT, ENCFF190RFD, ENCFF523XKB 629268192 ENCODE Processing Pipeline e1db41b8ec81a444632855d37c62e040 https://www.encodeproject.org/files/ENCFF963WYB/@@download/ENCFF963WYB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF548YCU bigWig signal p-value ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF018WHT, ENCFF190RFD, ENCFF413VXU, ENCFF523XKB 763111429 ENCODE Processing Pipeline 1fab2278c8df8e459501c2d9eb81afaf https://www.encodeproject.org/files/ENCFF548YCU/@@download/ENCFF548YCU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF807SYJ bigWig fold change over control ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF413VXU, ENCFF523XKB 485054623 ENCODE Processing Pipeline 64c29506554d694982123e2d205726da https://www.encodeproject.org/files/ENCFF807SYJ/@@download/ENCFF807SYJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF389ROP bigWig fold change over control ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF018WHT, ENCFF190RFD, ENCFF523XKB 614971806 ENCODE Processing Pipeline 240b8ab1784af4e2e65c9f125910977d https://www.encodeproject.org/files/ENCFF389ROP/@@download/ENCFF389ROP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF235MDM bigWig fold change over control ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF018WHT, ENCFF190RFD, ENCFF413VXU, ENCFF523XKB 853332691 ENCODE Processing Pipeline 1068a769f35f6a296a7c3b4e223f4ef2 https://www.encodeproject.org/files/ENCFF235MDM/@@download/ENCFF235MDM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF497HJU bed narrowPeak replicated peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF340RLF, ENCFF415BPD, ENCFF510AVX 994883 ENCODE Processing Pipeline 79c710ac2e95a896f8b00a34bb6e4332 https://www.encodeproject.org/files/ENCFF497HJU/@@download/ENCFF497HJU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF288XVI bigBed narrowPeak replicated peaks ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF497HJU 2291429 ENCODE Processing Pipeline d10fe85632e0421007003ad6a791debf https://www.encodeproject.org/files/ENCFF288XVI/@@download/ENCFF288XVI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF001ZTV fastq reads ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1069889106 Bing Ren, UCSD ccce1d611dd69808059721dd91857666 SRA:SRR3651647 https://www.encodeproject.org/files/ENCFF001ZTV/@@download/ENCFF001ZTV.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZUA fastq reads ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1166090405 Bing Ren, UCSD 4355305ca2ec52013ffb5784ba63324a SRA:SRR3651645 https://www.encodeproject.org/files/ENCFF001ZUA/@@download/ENCFF001ZUA.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF779IWJ fastq reads ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 623893407 Bing Ren, UCSD 9316057f82efef9a2afb60e1e49548fe SRA:SRR3651648 https://www.encodeproject.org/files/ENCFF779IWJ/@@download/ENCFF779IWJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVD/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF874XRD fastq reads ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 402738597 Bing Ren, UCSD 67a889351dbd2a61bd8dd041327b259e SRA:SRR3651646 https://www.encodeproject.org/files/ENCFF874XRD/@@download/ENCFF874XRD.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUR/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF551UQW bam alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTV, ENCFF779IWJ, ENCFF806TVZ 1348670490 ENCODE Processing Pipeline 72466d0a39b60e3468cc9a3c42898df5 https://www.encodeproject.org/files/ENCFF551UQW/@@download/ENCFF551UQW.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF601WLB bam alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUA, ENCFF806TVZ, ENCFF874XRD 1256110621 ENCODE Processing Pipeline 172233f7c0e762efd992dc80ca70d75f https://www.encodeproject.org/files/ENCFF601WLB/@@download/ENCFF601WLB.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF314NZI bed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF601WLB, ENCFF657TOI 625344 ENCODE Processing Pipeline 821c4d142a756559d06dfc2296254693 https://www.encodeproject.org/files/ENCFF314NZI/@@download/ENCFF314NZI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF543IAN bed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF551UQW, ENCFF657TOI 477539 ENCODE Processing Pipeline 9fdbf5b7ef0efe9d8ba7a570af35f163 https://www.encodeproject.org/files/ENCFF543IAN/@@download/ENCFF543IAN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF684PWP bigBed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF543IAN 1345653 ENCODE Processing Pipeline e273a822af0ea193f870397f79c2e2db https://www.encodeproject.org/files/ENCFF684PWP/@@download/ENCFF684PWP.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF453ZON bed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF551UQW, ENCFF601WLB, ENCFF657TOI 381958 ENCODE Processing Pipeline 1567ea93fbeedf308c9a15a78c80cf61 https://www.encodeproject.org/files/ENCFF453ZON/@@download/ENCFF453ZON.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF153AJZ bigBed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF314NZI 1429438 ENCODE Processing Pipeline 00c81229ece3a6ea251fca4c4855a85b https://www.encodeproject.org/files/ENCFF153AJZ/@@download/ENCFF153AJZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF465KIL bigBed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF453ZON 1031645 ENCODE Processing Pipeline b9cb8e070d2b67fa218747d78271ed85 https://www.encodeproject.org/files/ENCFF465KIL/@@download/ENCFF465KIL.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF829QDP bigWig signal p-value ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF601WLB, ENCFF657TOI 387061818 ENCODE Processing Pipeline 46446034dc0bcf184b00a83d9df89a52 https://www.encodeproject.org/files/ENCFF829QDP/@@download/ENCFF829QDP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF322AQW bigWig signal p-value ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF551UQW, ENCFF657TOI 501276970 ENCODE Processing Pipeline 3ecbf6caa7b6dc74b0513d5943055cee https://www.encodeproject.org/files/ENCFF322AQW/@@download/ENCFF322AQW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF690LJF bigWig signal p-value ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF551UQW, ENCFF601WLB, ENCFF657TOI 509736151 ENCODE Processing Pipeline 8695a0be7bf83dc703ad6bc0706a524a https://www.encodeproject.org/files/ENCFF690LJF/@@download/ENCFF690LJF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF661LRX bigWig fold change over control ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF066KEA, ENCFF601WLB, ENCFF657TOI 475021512 ENCODE Processing Pipeline 8ccb5a63c0f3b7afb5ba42676c7393d3 https://www.encodeproject.org/files/ENCFF661LRX/@@download/ENCFF661LRX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF946RUL bigBed narrowPeak replicated peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF477XZD 864885 ENCODE Processing Pipeline 85718ed83398324d9ffd8a911c224d83 https://www.encodeproject.org/files/ENCFF946RUL/@@download/ENCFF946RUL.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF477XZD bed narrowPeak replicated peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF314NZI, ENCFF453ZON, ENCFF543IAN 363522 ENCODE Processing Pipeline f8e8079fa771fea797b8d77dc119347a https://www.encodeproject.org/files/ENCFF477XZD/@@download/ENCFF477XZD.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF665BQL bigWig fold change over control ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF066KEA, ENCFF551UQW, ENCFF657TOI 500159535 ENCODE Processing Pipeline 3727e400af5e738f2c3c3bfd90672c0e https://www.encodeproject.org/files/ENCFF665BQL/@@download/ENCFF665BQL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF083ZHT bigWig fold change over control ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066KEA, ENCFF551UQW, ENCFF601WLB, ENCFF657TOI 789720959 ENCODE Processing Pipeline f14e1126923a8aee126d503e095c723f https://www.encodeproject.org/files/ENCFF083ZHT/@@download/ENCFF083ZHT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF191OXM bam unfiltered alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTV, ENCFF018NEO, ENCFF779IWJ 2012102398 ENCODE Processing Pipeline 964987670984fc4d9609ce52454a7d84 https://www.encodeproject.org/files/ENCFF191OXM/@@download/ENCFF191OXM.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF088VLG bam unfiltered alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUA, ENCFF018NEO, ENCFF874XRD 1915438620 ENCODE Processing Pipeline 747adac35822c3c597df3ba86535c66b https://www.encodeproject.org/files/ENCFF088VLG/@@download/ENCFF088VLG.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF378ELV bam alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUA, ENCFF018NEO, ENCFF874XRD 1156600962 ENCODE Processing Pipeline ab4f7b5b1c153da398cff6eac9267f90 https://www.encodeproject.org/files/ENCFF378ELV/@@download/ENCFF378ELV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF483GFV bam alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTV, ENCFF018NEO, ENCFF779IWJ 1205209839 ENCODE Processing Pipeline 0a186519daba8eef9227aee94c351613 https://www.encodeproject.org/files/ENCFF483GFV/@@download/ENCFF483GFV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF510JCN bed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF378ELV, ENCFF735XMC 639627 ENCODE Processing Pipeline 4b5f31099202154a438ca0de45b8ba13 https://www.encodeproject.org/files/ENCFF510JCN/@@download/ENCFF510JCN.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF112EMC bed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF483GFV, ENCFF735XMC 468261 ENCODE Processing Pipeline 55a66f0a9b5d563f16b1ee0ed7ee2f06 https://www.encodeproject.org/files/ENCFF112EMC/@@download/ENCFF112EMC.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF032ZCY bed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF378ELV, ENCFF483GFV, ENCFF735XMC 386180 ENCODE Processing Pipeline 445a8d152cc020034e10675635a5defd https://www.encodeproject.org/files/ENCFF032ZCY/@@download/ENCFF032ZCY.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF654MKC bigBed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF510JCN 1462471 ENCODE Processing Pipeline c33d013d0db18ddf0b3ca504daca70aa https://www.encodeproject.org/files/ENCFF654MKC/@@download/ENCFF654MKC.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF599YFQ bigBed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF112EMC 1316972 ENCODE Processing Pipeline 81f9f257ffebd791c40842962a18596a https://www.encodeproject.org/files/ENCFF599YFQ/@@download/ENCFF599YFQ.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF011TZN bigBed narrowPeak peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032ZCY 1048985 ENCODE Processing Pipeline 7b805ffd1b4735fd92abd331fe6e806a https://www.encodeproject.org/files/ENCFF011TZN/@@download/ENCFF011TZN.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133IGZ bigWig signal p-value ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF378ELV, ENCFF735XMC 390065034 ENCODE Processing Pipeline 150f32fe521367c88a58c284a285cce9 https://www.encodeproject.org/files/ENCFF133IGZ/@@download/ENCFF133IGZ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF930QXU bigWig signal p-value ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF483GFV, ENCFF735XMC 496798881 ENCODE Processing Pipeline 73edbea5ca8617ea103f0adc7be5b786 https://www.encodeproject.org/files/ENCFF930QXU/@@download/ENCFF930QXU.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF118DQV bigWig signal p-value ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF378ELV, ENCFF483GFV, ENCFF735XMC 510786863 ENCODE Processing Pipeline 15e02101c68da5a068093e5c61850b33 https://www.encodeproject.org/files/ENCFF118DQV/@@download/ENCFF118DQV.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF973HMC bigWig fold change over control ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF130PCO, ENCFF378ELV, ENCFF735XMC 474496631 ENCODE Processing Pipeline 4851f7f7839674776adf6be71c3c8098 https://www.encodeproject.org/files/ENCFF973HMC/@@download/ENCFF973HMC.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF003YWO bigWig fold change over control ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF130PCO, ENCFF483GFV, ENCFF735XMC 493272663 ENCODE Processing Pipeline 1f407fa6c701c08e4b6cd0f4cac117f5 https://www.encodeproject.org/files/ENCFF003YWO/@@download/ENCFF003YWO.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF217EPP bigWig fold change over control ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF130PCO, ENCFF378ELV, ENCFF483GFV, ENCFF735XMC 773633729 ENCODE Processing Pipeline 1c5f7e4205e2878d41da4dc30d269425 https://www.encodeproject.org/files/ENCFF217EPP/@@download/ENCFF217EPP.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF090NYW bed narrowPeak replicated peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032ZCY, ENCFF112EMC, ENCFF510JCN 360059 ENCODE Processing Pipeline 9a7b728c60190075e2dc84208dd65d06 https://www.encodeproject.org/files/ENCFF090NYW/@@download/ENCFF090NYW.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF523QXM bigBed narrowPeak replicated peaks ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF090NYW 858878 ENCODE Processing Pipeline 76d23564edfdc528b59d97de9296b4a9 https://www.encodeproject.org/files/ENCFF523QXM/@@download/ENCFF523QXM.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ERZ fastq reads ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 837371984 Bing Ren, UCSD e8e51447b558acf127330d23d7bc252b SRA:SRR3653019 https://www.encodeproject.org/files/ENCFF002ERZ/@@download/ENCFF002ERZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESC fastq reads ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 548053379 Bing Ren, UCSD 3d5ea4f85aae98b5aee8d58848d59a65 SRA:SRR3653017 https://www.encodeproject.org/files/ENCFF002ESC/@@download/ENCFF002ESC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXQ/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF996GTX fastq reads ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 884432044 Bing Ren, UCSD 37257cd35a2606826132bd9f3bbc730a SRA:SRR3653018 https://www.encodeproject.org/files/ENCFF996GTX/@@download/ENCFF996GTX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXQ/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF402NFB fastq reads ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 267804749 Bing Ren, UCSD c80a5921373888db17d015670eb9cf87 SRA:SRR3653020 https://www.encodeproject.org/files/ENCFF402NFB/@@download/ENCFF402NFB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXP/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF071KNC bam alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESC, ENCFF806TVZ, ENCFF996GTX 1170425178 ENCODE Processing Pipeline a1f65d208160b55e2f587c855673de07 https://www.encodeproject.org/files/ENCFF071KNC/@@download/ENCFF071KNC.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF124IPV bam alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ERZ, ENCFF402NFB, ENCFF806TVZ 1098979178 ENCODE Processing Pipeline 72654c293a26365eff03c9017ee1f89f https://www.encodeproject.org/files/ENCFF124IPV/@@download/ENCFF124IPV.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF384JTT bigBed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF752ZFZ 3216178 ENCODE Processing Pipeline 1f0759959e6b39205dcdb1585be4fe68 https://www.encodeproject.org/files/ENCFF384JTT/@@download/ENCFF384JTT.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF277JZL bed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF071KNC, ENCFF124IPV, ENCFF126TZS, ENCFF731DCA 784610 ENCODE Processing Pipeline 6b02da83fc365e39858090e0595c3bd9 https://www.encodeproject.org/files/ENCFF277JZL/@@download/ENCFF277JZL.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF824HQY bigBed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF769MGC 2680575 ENCODE Processing Pipeline 3e55edb31c924f5179f123fe13b7353b https://www.encodeproject.org/files/ENCFF824HQY/@@download/ENCFF824HQY.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF769MGC bed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF124IPV, ENCFF126TZS, ENCFF731DCA 1235988 ENCODE Processing Pipeline 16409a4553fc159559e2ea521b956091 https://www.encodeproject.org/files/ENCFF769MGC/@@download/ENCFF769MGC.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF752ZFZ bed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF071KNC, ENCFF126TZS, ENCFF731DCA 1477392 ENCODE Processing Pipeline d0b596091156a0b737188c70598aa9db https://www.encodeproject.org/files/ENCFF752ZFZ/@@download/ENCFF752ZFZ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF808LDF bigBed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF277JZL 2052554 ENCODE Processing Pipeline 4b9912ef1c7ef121eedc191da67cb4cb https://www.encodeproject.org/files/ENCFF808LDF/@@download/ENCFF808LDF.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF251QAF bigWig signal p-value ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF071KNC, ENCFF126TZS, ENCFF731DCA 407258866 ENCODE Processing Pipeline 7529b66a20a3461f3bd633b72276e4d8 https://www.encodeproject.org/files/ENCFF251QAF/@@download/ENCFF251QAF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF635UBX bigWig signal p-value ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF124IPV, ENCFF126TZS, ENCFF731DCA 485221102 ENCODE Processing Pipeline 049c5c62215ac5c8265b31ad20ab365b https://www.encodeproject.org/files/ENCFF635UBX/@@download/ENCFF635UBX.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF081VTA bigWig signal p-value ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF071KNC, ENCFF124IPV, ENCFF126TZS, ENCFF731DCA 535148759 ENCODE Processing Pipeline bd64a18051ecb236199ec8bbe460633c https://www.encodeproject.org/files/ENCFF081VTA/@@download/ENCFF081VTA.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF139CHR bigWig fold change over control ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF124IPV, ENCFF126TZS, ENCFF731DCA 497824723 ENCODE Processing Pipeline 69eeb41dc37a1311565e8c1b433de2ab https://www.encodeproject.org/files/ENCFF139CHR/@@download/ENCFF139CHR.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF727JFI bigWig fold change over control ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF071KNC, ENCFF124IPV, ENCFF126TZS, ENCFF731DCA 759644259 ENCODE Processing Pipeline e47c4e7305f6767705c43d4270f06e23 https://www.encodeproject.org/files/ENCFF727JFI/@@download/ENCFF727JFI.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF330MWY bigWig fold change over control ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF071KNC, ENCFF126TZS, ENCFF731DCA 471416646 ENCODE Processing Pipeline c0c4f7fdbef01dbaafc0e183059fc28d https://www.encodeproject.org/files/ENCFF330MWY/@@download/ENCFF330MWY.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF320ZUA bed narrowPeak replicated peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF277JZL, ENCFF752ZFZ, ENCFF769MGC 827327 ENCODE Processing Pipeline 64dc0f483c38e62d5146e95874bd3618 https://www.encodeproject.org/files/ENCFF320ZUA/@@download/ENCFF320ZUA.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF880MZY bigBed narrowPeak replicated peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF320ZUA 1764911 ENCODE Processing Pipeline 8d4a6232c2749ae6c0f3a9445d4bc10e https://www.encodeproject.org/files/ENCFF880MZY/@@download/ENCFF880MZY.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF443TRK bam unfiltered alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESC, ENCFF018NEO, ENCFF996GTX 1555087849 ENCODE Processing Pipeline b387c2f6934e137158f7b042b43f3fbc https://www.encodeproject.org/files/ENCFF443TRK/@@download/ENCFF443TRK.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF081GFY bam unfiltered alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ERZ, ENCFF018NEO, ENCFF402NFB 1393566175 ENCODE Processing Pipeline 1107e68c73bf22b84f2ddc7911b615e9 https://www.encodeproject.org/files/ENCFF081GFY/@@download/ENCFF081GFY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF264DHI bam alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESC, ENCFF018NEO, ENCFF996GTX 986193185 ENCODE Processing Pipeline ca566d90fdcb10f26acbf665baf8901e https://www.encodeproject.org/files/ENCFF264DHI/@@download/ENCFF264DHI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF258THY bam alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ERZ, ENCFF018NEO, ENCFF402NFB 1022144842 ENCODE Processing Pipeline b2e869059fb793ef540debb39b920a50 https://www.encodeproject.org/files/ENCFF258THY/@@download/ENCFF258THY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF295GYE bed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF258THY, ENCFF276TCT, ENCFF461JUO 1248204 ENCODE Processing Pipeline c483e0e313f0c69ae2383966c6749f8a https://www.encodeproject.org/files/ENCFF295GYE/@@download/ENCFF295GYE.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF262WGI bed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF264DHI, ENCFF276TCT 516725 ENCODE Processing Pipeline e04f151796455202b02abbc17be63803 https://www.encodeproject.org/files/ENCFF262WGI/@@download/ENCFF262WGI.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF923JXT bed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF258THY, ENCFF264DHI, ENCFF276TCT, ENCFF461JUO 804378 ENCODE Processing Pipeline ab1246a882d710d925cef97465e51e45 https://www.encodeproject.org/files/ENCFF923JXT/@@download/ENCFF923JXT.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF159QFQ bigBed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF295GYE 2707136 ENCODE Processing Pipeline 99a05cc52406aaf3ad3096d1ba45dea5 https://www.encodeproject.org/files/ENCFF159QFQ/@@download/ENCFF159QFQ.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF982FDO bigBed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF262WGI 1144363 ENCODE Processing Pipeline 54f45796a498518de62c26aab4f089ab https://www.encodeproject.org/files/ENCFF982FDO/@@download/ENCFF982FDO.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF380RNR bigBed narrowPeak peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF923JXT 2106946 ENCODE Processing Pipeline d0209452ef18731b7672804922508373 https://www.encodeproject.org/files/ENCFF380RNR/@@download/ENCFF380RNR.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF577FJS bigWig signal p-value ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF258THY, ENCFF276TCT, ENCFF461JUO 414007851 ENCODE Processing Pipeline ff053aaf40d127672383cf202662a2a3 https://www.encodeproject.org/files/ENCFF577FJS/@@download/ENCFF577FJS.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF185KWN bigWig signal p-value ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF264DHI, ENCFF276TCT 250969649 ENCODE Processing Pipeline 3bb614c67daca17a61ecd5383dc2ce0f https://www.encodeproject.org/files/ENCFF185KWN/@@download/ENCFF185KWN.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF840BRW bigWig signal p-value ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF258THY, ENCFF264DHI, ENCFF276TCT, ENCFF461JUO 536943391 ENCODE Processing Pipeline 32ec95b5a5f0a74d4c763dd73d620446 https://www.encodeproject.org/files/ENCFF840BRW/@@download/ENCFF840BRW.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF729ZDW bigWig fold change over control ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF258THY, ENCFF276TCT, ENCFF461JUO 494460640 ENCODE Processing Pipeline c75f079b38822aba1fa7aaad9c0fa1c6 https://www.encodeproject.org/files/ENCFF729ZDW/@@download/ENCFF729ZDW.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF239JIA bigWig fold change over control ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF264DHI, ENCFF276TCT 344507301 ENCODE Processing Pipeline 9679488db8e157d8502d3bb06e8f799d https://www.encodeproject.org/files/ENCFF239JIA/@@download/ENCFF239JIA.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF280UTR bigWig fold change over control ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF258THY, ENCFF264DHI, ENCFF276TCT, ENCFF461JUO 756320859 ENCODE Processing Pipeline 491d7cf41d2cfd3d8a1c63fd72d98268 https://www.encodeproject.org/files/ENCFF280UTR/@@download/ENCFF280UTR.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF143OKF bed narrowPeak replicated peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF262WGI, ENCFF295GYE, ENCFF923JXT 723012 ENCODE Processing Pipeline 2fe13d1d0a6755a11d493b8a2954ed41 https://www.encodeproject.org/files/ENCFF143OKF/@@download/ENCFF143OKF.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF863JHH bigBed narrowPeak replicated peaks ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF143OKF 1559386 ENCODE Processing Pipeline a790080f16c0c53bee4b01262f1910e9 https://www.encodeproject.org/files/ENCFF863JHH/@@download/ENCFF863JHH.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF798MRO fastq reads ENCSR890SJI ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 1 50 single-ended 1105858611 Richard Myers, HAIB a6d6e14e912ba7dd0d792680b14ecf74 SRA:SRR5112226 https://www.encodeproject.org/files/ENCFF798MRO/@@download/ENCFF798MRO.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF237MGW bam unfiltered alignments ENCSR890SJI ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 ENCFF018NEO, ENCFF798MRO 1221359283 ENCODE Processing Pipeline 4e1fefe9a80e57e3b7ff2377eeddc6fe https://www.encodeproject.org/files/ENCFF237MGW/@@download/ENCFF237MGW.bam mm10 released insufficient read depth for broad peaks control ENCFF365VOZ bam alignments ENCSR890SJI ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF798MRO 920901870 ENCODE Processing Pipeline 494e210b80abd851820efadb5c9db603 https://www.encodeproject.org/files/ENCFF365VOZ/@@download/ENCFF365VOZ.bam mm10 released insufficient read depth for broad peaks control ENCFF001ZUK fastq reads ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 810345507 Bing Ren, UCSD b37f9696337e03dcc936d473a38f1356 SRA:SRR3652130 https://www.encodeproject.org/files/ENCFF001ZUK/@@download/ENCFF001ZUK.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUU/ released low read length, control low read depth, low read depth ENCFF001ZUO fastq reads ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 869883283 Bing Ren, UCSD 3b196381581fed434c7b95f01198a7de SRA:SRR3652129 https://www.encodeproject.org/files/ENCFF001ZUO/@@download/ENCFF001ZUO.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUT/ released low read length, control low read depth, low read depth ENCFF956VEL bam alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUK, ENCFF806TVZ 630894611 ENCODE Processing Pipeline 7728384948662c02a34215815124ace6 https://www.encodeproject.org/files/ENCFF956VEL/@@download/ENCFF956VEL.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF445BVX bam alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUO, ENCFF806TVZ 692175224 ENCODE Processing Pipeline b5e85f1b2b8513cee79a2a90dc91423b https://www.encodeproject.org/files/ENCFF445BVX/@@download/ENCFF445BVX.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF814IMB bed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF807GND, ENCFF841RBB, ENCFF956VEL 611791 ENCODE Processing Pipeline cb65454558a4633a3eb4189437f4f13a https://www.encodeproject.org/files/ENCFF814IMB/@@download/ENCFF814IMB.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF956JXL bigBed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF814IMB 1896611 ENCODE Processing Pipeline 9ad50cb6ab3326e0857a3c88ba730bc3 https://www.encodeproject.org/files/ENCFF956JXL/@@download/ENCFF956JXL.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF250DOE bigBed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF807RYJ 1829693 ENCODE Processing Pipeline 51adaad8cde1d55e673f04f92c018db9 https://www.encodeproject.org/files/ENCFF250DOE/@@download/ENCFF250DOE.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF147XHS bed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF445BVX, ENCFF807GND, ENCFF841RBB 637536 ENCODE Processing Pipeline c195e4cb8a7c64a22a1916470b8c3f9f https://www.encodeproject.org/files/ENCFF147XHS/@@download/ENCFF147XHS.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF807RYJ bed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF445BVX, ENCFF807GND, ENCFF841RBB, ENCFF956VEL 597843 ENCODE Processing Pipeline bc2dc9ad87f94caec6b2b49cab796b15 https://www.encodeproject.org/files/ENCFF807RYJ/@@download/ENCFF807RYJ.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF033OUX bigBed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF147XHS 1953676 ENCODE Processing Pipeline 3d5aadc7becbbe048129f2b1b5a32c98 https://www.encodeproject.org/files/ENCFF033OUX/@@download/ENCFF033OUX.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF984ZSY bigWig signal p-value ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF445BVX, ENCFF807GND, ENCFF841RBB 348060159 ENCODE Processing Pipeline 03c322eeb59012bdca1fc41452c19d3d https://www.encodeproject.org/files/ENCFF984ZSY/@@download/ENCFF984ZSY.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF617BAG bigWig signal p-value ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF807GND, ENCFF841RBB, ENCFF956VEL 367924854 ENCODE Processing Pipeline abbfe498293eddb27af32eaabc83979e https://www.encodeproject.org/files/ENCFF617BAG/@@download/ENCFF617BAG.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF859WPS bigWig signal p-value ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF445BVX, ENCFF807GND, ENCFF841RBB, ENCFF956VEL 474087608 ENCODE Processing Pipeline 3d84196fd7b95d469c22f9d4ac035b89 https://www.encodeproject.org/files/ENCFF859WPS/@@download/ENCFF859WPS.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF879ZWH bigWig fold change over control ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF445BVX, ENCFF807GND, ENCFF841RBB 315990746 ENCODE Processing Pipeline 9b225c0cfe2f0f1fca7e67f2cfb93a81 https://www.encodeproject.org/files/ENCFF879ZWH/@@download/ENCFF879ZWH.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF937USH bigWig fold change over control ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF807GND, ENCFF841RBB, ENCFF956VEL 270657945 ENCODE Processing Pipeline 0b9f35e728af63caa186806d8bc53156 https://www.encodeproject.org/files/ENCFF937USH/@@download/ENCFF937USH.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF570KDA bed narrowPeak replicated peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147XHS, ENCFF807RYJ, ENCFF814IMB 681244 ENCODE Processing Pipeline 503120b989b6ca65c6f22c16934a3b9e https://www.encodeproject.org/files/ENCFF570KDA/@@download/ENCFF570KDA.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF599JVF bigWig fold change over control ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF445BVX, ENCFF807GND, ENCFF841RBB, ENCFF956VEL 474229814 ENCODE Processing Pipeline 57ac5be078f34b44be34348d32f52083 https://www.encodeproject.org/files/ENCFF599JVF/@@download/ENCFF599JVF.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF425MMP bigBed narrowPeak replicated peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF570KDA 1596903 ENCODE Processing Pipeline 6726dbf2a50e2b1338fa759d79949a64 https://www.encodeproject.org/files/ENCFF425MMP/@@download/ENCFF425MMP.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF615DHF bam unfiltered alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUO, ENCFF018NEO 1058688578 ENCODE Processing Pipeline 88e167c9bf1bc09c974d28896dc35f82 https://www.encodeproject.org/files/ENCFF615DHF/@@download/ENCFF615DHF.bam mm10 released low read length, control low read depth, low read depth ENCFF189PMC bam unfiltered alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUK, ENCFF018NEO 971094572 ENCODE Processing Pipeline ce7527678cc0ae387ebbf93aa393f97b https://www.encodeproject.org/files/ENCFF189PMC/@@download/ENCFF189PMC.bam mm10 released low read length, control low read depth, low read depth ENCFF718KJC bam alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUO, ENCFF018NEO 692026695 ENCODE Processing Pipeline 84b1be7a7152e8f27d6f950fdfbc40c3 https://www.encodeproject.org/files/ENCFF718KJC/@@download/ENCFF718KJC.bam mm10 released low read length, control low read depth, low read depth ENCFF283VWT bam alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUK, ENCFF018NEO 630789632 ENCODE Processing Pipeline 4ab23969b5e9db719413db9f7c21baf7 https://www.encodeproject.org/files/ENCFF283VWT/@@download/ENCFF283VWT.bam mm10 released low read length, control low read depth, low read depth ENCFF460UCU bed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF718KJC, ENCFF804FRH 597031 ENCODE Processing Pipeline f2c8e461fd6128e811ea56d643bf915d https://www.encodeproject.org/files/ENCFF460UCU/@@download/ENCFF460UCU.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF773BMU bed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF283VWT, ENCFF804FRH 515097 ENCODE Processing Pipeline e03c937303feb1af15e78c944a745301 https://www.encodeproject.org/files/ENCFF773BMU/@@download/ENCFF773BMU.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF095OBN bed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF283VWT, ENCFF718KJC, ENCFF804FRH 598460 ENCODE Processing Pipeline a2d1276564bbf94e65c36ea0c1211a3d https://www.encodeproject.org/files/ENCFF095OBN/@@download/ENCFF095OBN.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF997FNX bigBed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF460UCU 1844734 ENCODE Processing Pipeline ee352dc4a401d8978c9e2dfdf050d27d https://www.encodeproject.org/files/ENCFF997FNX/@@download/ENCFF997FNX.bigBed mm10 released low read length, control low read depth, low read depth ENCFF837IES bigBed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF773BMU 1675056 ENCODE Processing Pipeline 8ea39842856bf7979b17f80cd1877b4b https://www.encodeproject.org/files/ENCFF837IES/@@download/ENCFF837IES.bigBed mm10 released low read length, control low read depth, low read depth ENCFF264IEX bigBed narrowPeak peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF095OBN 1831890 ENCODE Processing Pipeline b2a29949477a95b2813928794b3f0656 https://www.encodeproject.org/files/ENCFF264IEX/@@download/ENCFF264IEX.bigBed mm10 released low read length, control low read depth, low read depth ENCFF281MFA bigWig signal p-value ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF718KJC, ENCFF804FRH 390016754 ENCODE Processing Pipeline 03ebb06be4438da593a51acc911c4bf4 https://www.encodeproject.org/files/ENCFF281MFA/@@download/ENCFF281MFA.bigWig mm10 released low read length, control low read depth, low read depth ENCFF516QVT bigWig signal p-value ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF283VWT, ENCFF804FRH 234770472 ENCODE Processing Pipeline c6d9a7f2de5edb575f0c4a4f034cd560 https://www.encodeproject.org/files/ENCFF516QVT/@@download/ENCFF516QVT.bigWig mm10 released low read length, control low read depth, low read depth ENCFF705LEM bigWig signal p-value ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF283VWT, ENCFF718KJC, ENCFF804FRH 474076935 ENCODE Processing Pipeline 7e7e31c233d2dc11af4852309b513e73 https://www.encodeproject.org/files/ENCFF705LEM/@@download/ENCFF705LEM.bigWig mm10 released low read length, control low read depth, low read depth ENCFF472ECL bigWig fold change over control ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF010EXO, ENCFF718KJC, ENCFF804FRH 332930384 ENCODE Processing Pipeline 7e309c814a2ceb8758285e762e595f49 https://www.encodeproject.org/files/ENCFF472ECL/@@download/ENCFF472ECL.bigWig mm10 released low read length, control low read depth, low read depth ENCFF714PMW bigWig fold change over control ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF283VWT, ENCFF804FRH 211444921 ENCODE Processing Pipeline 2569f9a305bf415d7f8cd9477be03e99 https://www.encodeproject.org/files/ENCFF714PMW/@@download/ENCFF714PMW.bigWig mm10 released low read length, control low read depth, low read depth ENCFF053JUA bigWig fold change over control ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF010EXO, ENCFF283VWT, ENCFF718KJC, ENCFF804FRH 474434289 ENCODE Processing Pipeline da2304fb428b2c5601e5fb5db574d67a https://www.encodeproject.org/files/ENCFF053JUA/@@download/ENCFF053JUA.bigWig mm10 released low read length, control low read depth, low read depth ENCFF482JBE bed narrowPeak replicated peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF095OBN, ENCFF460UCU, ENCFF773BMU 661854 ENCODE Processing Pipeline 97892ee538f73732425d4e187f0ee8f7 https://www.encodeproject.org/files/ENCFF482JBE/@@download/ENCFF482JBE.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF463VQV bigBed narrowPeak replicated peaks ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF482JBE 1561924 ENCODE Processing Pipeline e8a68d5032b2ffda91e3f876a8c3ce9f https://www.encodeproject.org/files/ENCFF463VQV/@@download/ENCFF463VQV.bigBed mm10 released low read length, control low read depth, low read depth ENCFF002BXO fastq reads ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 800274703 Bing Ren, UCSD 613bfa956a195ce9130ab58ba8b7e73a SRA:SRR3652972 https://www.encodeproject.org/files/ENCFF002BXO/@@download/ENCFF002BXO.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF550AJM fastq reads ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 522593935 Bing Ren, UCSD 109392f2f8c85da3cca327aca9ba16e8 SRA:SRR3652971 https://www.encodeproject.org/files/ENCFF550AJM/@@download/ENCFF550AJM.fastq.gz Illumina HiSeq 2500 released low read length, low read depth ENCFF262ZHI bam unfiltered alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXO, ENCFF806TVZ 1026048406 ENCODE Processing Pipeline e303b8cbe4c9bf8122418c7e0d714634 https://www.encodeproject.org/files/ENCFF262ZHI/@@download/ENCFF262ZHI.bam mm10-minimal archived low read length, low read depth ENCFF209SIX bam unfiltered alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF550AJM, ENCFF806TVZ 706538439 ENCODE Processing Pipeline 53d6f53444dca2e33a808874983c379d https://www.encodeproject.org/files/ENCFF209SIX/@@download/ENCFF209SIX.bam mm10-minimal archived low read length, low read depth ENCFF562EMV bam alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXO, ENCFF806TVZ 606336374 ENCODE Processing Pipeline 517cb0141a7df867a917e4afd800c27f https://www.encodeproject.org/files/ENCFF562EMV/@@download/ENCFF562EMV.bam mm10-minimal archived low read length, low read depth ENCFF623BMA bam alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF550AJM, ENCFF806TVZ 453274271 ENCODE Processing Pipeline d30cf909ecd044e0cc8e16df8aecdc84 https://www.encodeproject.org/files/ENCFF623BMA/@@download/ENCFF623BMA.bam mm10-minimal archived low read length, low read depth ENCFF500SQT bam unfiltered alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXO, ENCFF018NEO 1027650666 ENCODE Processing Pipeline cbaa6efbf5086b5cb5224e6ff7e20fcd https://www.encodeproject.org/files/ENCFF500SQT/@@download/ENCFF500SQT.bam mm10 released low read length, low read depth ENCFF078ILT bam unfiltered alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF018NEO, ENCFF550AJM 707922209 ENCODE Processing Pipeline 99a78e5630030a52432a828ba85f5905 https://www.encodeproject.org/files/ENCFF078ILT/@@download/ENCFF078ILT.bam mm10 released low read length, low read depth ENCFF995XOU bam alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXO, ENCFF018NEO 606089474 ENCODE Processing Pipeline 0298e4fd869982f31a73cd10b6c80ca6 https://www.encodeproject.org/files/ENCFF995XOU/@@download/ENCFF995XOU.bam mm10 released low read length, low read depth ENCFF903NWQ bam alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF550AJM 453081246 ENCODE Processing Pipeline a29c7951d73ce1e28fb8e637a2f42eef https://www.encodeproject.org/files/ENCFF903NWQ/@@download/ENCFF903NWQ.bam mm10 released low read length, low read depth ENCFF002BXR fastq reads ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1104718292 Bing Ren, UCSD 13e2b2415425d9609cd07a7397efeab9 SRA:SRR3652592 https://www.encodeproject.org/files/ENCFF002BXR/@@download/ENCFF002BXR.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF002BXT fastq reads ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1292114196 Bing Ren, UCSD 3b95306c7dd8496bcf2aa4b6aa90457e SRA:SRR3652591 https://www.encodeproject.org/files/ENCFF002BXT/@@download/ENCFF002BXT.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF369BCW bam unfiltered alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXR, ENCFF806TVZ 1448413113 ENCODE Processing Pipeline 733ef36c5e3b13ed95b5002c22dedf22 https://www.encodeproject.org/files/ENCFF369BCW/@@download/ENCFF369BCW.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF846SCW bam unfiltered alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXT, ENCFF806TVZ 1687659760 ENCODE Processing Pipeline fc2a898c00618528b1fdfb92c44902d2 https://www.encodeproject.org/files/ENCFF846SCW/@@download/ENCFF846SCW.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF461NAJ bam alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXT, ENCFF806TVZ 1079445572 ENCODE Processing Pipeline d327521d5c7aa45452c839f2c4c5690e https://www.encodeproject.org/files/ENCFF461NAJ/@@download/ENCFF461NAJ.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF720BSQ bam alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXR, ENCFF806TVZ 933154793 ENCODE Processing Pipeline 49707ca72e932c4031a4574036e844b1 https://www.encodeproject.org/files/ENCFF720BSQ/@@download/ENCFF720BSQ.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF691TET bam unfiltered alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BXT, ENCFF018NEO 1690080061 ENCODE Processing Pipeline 7b6e4e871f4b70dda69887a6e9397d0c https://www.encodeproject.org/files/ENCFF691TET/@@download/ENCFF691TET.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF422NQB bam unfiltered alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BXR, ENCFF018NEO 1450605103 ENCODE Processing Pipeline 5eec7942e96107d2bd66e75b19ce77d3 https://www.encodeproject.org/files/ENCFF422NQB/@@download/ENCFF422NQB.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF631VBQ bam alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXT, ENCFF018NEO 1079083853 ENCODE Processing Pipeline 12fc1e31f6c0e14303350e677f8da221 https://www.encodeproject.org/files/ENCFF631VBQ/@@download/ENCFF631VBQ.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF568KLX bam alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXR, ENCFF018NEO 932838089 ENCODE Processing Pipeline 50a8b56679d6ca955992499b9ad1af93 https://www.encodeproject.org/files/ENCFF568KLX/@@download/ENCFF568KLX.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF001MRR bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MRX 1601884845 Ross Hardison, PennState 6e3f825bf353d320b5a22abd87bacf4e https://www.encodeproject.org/files/ENCFF001MRR/@@download/ENCFF001MRR.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MRS bigBed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFS 463733 Ross Hardison, PennState 355593795099c6107159485012a86fb6 https://www.encodeproject.org/files/ENCFF001MRS/@@download/ENCFF001MRS.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MRT bigBed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFT 393386 Ross Hardison, PennState 66f98944d7609c21d8acb16308fbb295 https://www.encodeproject.org/files/ENCFF001MRT/@@download/ENCFF001MRT.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MRU bigBed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFU 295856 Ross Hardison, PennState 58c14289c4fbc91759aecdcc59d5ba7c https://www.encodeproject.org/files/ENCFF001MRU/@@download/ENCFF001MRU.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MRV bigWig signal ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 3353889748 Ross Hardison, PennState fc9f2d881606ba21b501f809b302427c https://www.encodeproject.org/files/ENCFF001MRV/@@download/ENCFF001MRV.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MRW bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MSL 6485271335 Ross Hardison, PennState 5f384e3ae61ced211f2f8eb02ac667de https://www.encodeproject.org/files/ENCFF001MRW/@@download/ENCFF001MRW.bam mm9 archived low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MRX fastq reads ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 1261099639 Ross Hardison, PennState 7f77ac95f075cf8991f861c05e61c350 https://www.encodeproject.org/files/ENCFF001MRX/@@download/ENCFF001MRX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001MSM/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001MRY bigWig signal ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5731298627 Ross Hardison, PennState 52a285132cd68a17adf222c3949504a0 https://www.encodeproject.org/files/ENCFF001MRY/@@download/ENCFF001MRY.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MRZ bigWig signal ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 6026660497 Ross Hardison, PennState b490ee19344d43b2f45108ece769a90e https://www.encodeproject.org/files/ENCFF001MRZ/@@download/ENCFF001MRZ.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001MSL fastq reads ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 5759769099 Ross Hardison, PennState f5397ecb7935af5ff6b84f39fe2705bd https://www.encodeproject.org/files/ENCFF001MSL/@@download/ENCFF001MSL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MSW/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001YFS bed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 204123 Ross Hardison, PennState 5486b3b6eb4ab3eb57e1387f38299c46 https://www.encodeproject.org/files/ENCFF001YFS/@@download/ENCFF001YFS.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001YFT bed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 204978 Ross Hardison, PennState c4110164197586aeedfa9f2cdfe44b1f https://www.encodeproject.org/files/ENCFF001YFT/@@download/ENCFF001YFT.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001YFU bed broadPeak peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 147516 Ross Hardison, PennState 02ed1c307f26ee405caacf6ae7356c29 https://www.encodeproject.org/files/ENCFF001YFU/@@download/ENCFF001YFU.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF282SQE bam unfiltered alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRX, ENCFF018NEO 1681545887 ENCODE Processing Pipeline 645db5f78b925f379409378b82fed44d https://www.encodeproject.org/files/ENCFF282SQE/@@download/ENCFF282SQE.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF181MQO bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRX, ENCFF018NEO 1126157125 ENCODE Processing Pipeline e5ebad477c6748970909ceca1e030d6b https://www.encodeproject.org/files/ENCFF181MQO/@@download/ENCFF181MQO.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF709ILX bam unfiltered alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSL, ENCFF018NEO 5208172392 ENCODE Processing Pipeline 40e3d03910323d741a8aad1bca5c3bea https://www.encodeproject.org/files/ENCFF709ILX/@@download/ENCFF709ILX.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF033GTE bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSL, ENCFF018NEO 3556656968 ENCODE Processing Pipeline 43bf54aaf8a6fb50818cec92c04546df https://www.encodeproject.org/files/ENCFF033GTE/@@download/ENCFF033GTE.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF793ZNS bigWig signal p-value ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 1018892642 ENCODE Processing Pipeline cad89029b4bca20c13d282035b08c65c https://www.encodeproject.org/files/ENCFF793ZNS/@@download/ENCFF793ZNS.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF842MLA bigWig signal p-value ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF033GTE, ENCFF383IWZ, ENCFF676LVI 1588189660 ENCODE Processing Pipeline 6a6711b0fcc00342b1e2d5069cb03cab https://www.encodeproject.org/files/ENCFF842MLA/@@download/ENCFF842MLA.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF612DCB bigWig signal p-value ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF033GTE, ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 1732356361 ENCODE Processing Pipeline cb10970b2dd94c7d05f1bd4627ba5655 https://www.encodeproject.org/files/ENCFF612DCB/@@download/ENCFF612DCB.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF842BCR bigWig fold change over control ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 805030455 ENCODE Processing Pipeline 2e12f1f7f86ce3afe59c20cf49aef350 https://www.encodeproject.org/files/ENCFF842BCR/@@download/ENCFF842BCR.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF390OEE bigWig fold change over control ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF033GTE, ENCFF383IWZ, ENCFF676LVI 1686626604 ENCODE Processing Pipeline 258950decc176b9e4d43f818d0932c70 https://www.encodeproject.org/files/ENCFF390OEE/@@download/ENCFF390OEE.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF382TKE bed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 5679327 ENCODE Processing Pipeline 4df86193aefde889f77c9229ea7cf232 https://www.encodeproject.org/files/ENCFF382TKE/@@download/ENCFF382TKE.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF279GQJ bigWig fold change over control ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF033GTE, ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 1794789333 ENCODE Processing Pipeline 7ef54d2de37e50e32cb03a8e0e9c24d7 https://www.encodeproject.org/files/ENCFF279GQJ/@@download/ENCFF279GQJ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF101JMH bed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF033GTE, ENCFF181MQO, ENCFF383IWZ, ENCFF676LVI 7116793 ENCODE Processing Pipeline 9487fc0e2df4789e874b07854ae5b8e6 https://www.encodeproject.org/files/ENCFF101JMH/@@download/ENCFF101JMH.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF328QPY bigBed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF101JMH 11202933 ENCODE Processing Pipeline 8e3fd8ab85b09ae8fb55472cf3cd6b03 https://www.encodeproject.org/files/ENCFF328QPY/@@download/ENCFF328QPY.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF684HMD bed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF033GTE, ENCFF383IWZ, ENCFF676LVI 7032305 ENCODE Processing Pipeline 2bfd2b7c1223f7e5d58cc5db887273b9 https://www.encodeproject.org/files/ENCFF684HMD/@@download/ENCFF684HMD.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF004VTE bed narrowPeak conservative idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF101JMH, ENCFF382TKE, ENCFF547MET, ENCFF684HMD 154839 ENCODE Processing Pipeline d0374d1bf03dee82f4edc30c75c31755 https://www.encodeproject.org/files/ENCFF004VTE/@@download/ENCFF004VTE.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF934LKD bigBed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF382TKE 11376800 ENCODE Processing Pipeline f4e28cbfadfbf5ecbefaa0bcf98acdcf https://www.encodeproject.org/files/ENCFF934LKD/@@download/ENCFF934LKD.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF724FOF bed narrowPeak optimal idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF101JMH, ENCFF382TKE, ENCFF547MET, ENCFF684HMD 159070 ENCODE Processing Pipeline 9fb3cab31531732d0ac1c02ea36c46ea https://www.encodeproject.org/files/ENCFF724FOF/@@download/ENCFF724FOF.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF564PGL bigBed narrowPeak peaks and background as input for IDR ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF684HMD 11249748 ENCODE Processing Pipeline 240ceb8ab2ea070e5d851ed8909b6f7e https://www.encodeproject.org/files/ENCFF564PGL/@@download/ENCFF564PGL.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF642WKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF004VTE 326759 ENCODE Processing Pipeline 7fd65d946223fb1a06d2d62c2adfe30f https://www.encodeproject.org/files/ENCFF642WKN/@@download/ENCFF642WKN.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF229RTM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF724FOF 333443 ENCODE Processing Pipeline f4a55c17c0155c8131ab270cb2d8106b https://www.encodeproject.org/files/ENCFF229RTM/@@download/ENCFF229RTM.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF002APW fastq reads ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2113199372 Bing Ren, UCSD 02d8a70f08ebd574b1ded8350b253fcf SRA:SRR3653221 https://www.encodeproject.org/files/ENCFF002APW/@@download/ENCFF002APW.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF002APZ fastq reads ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2107731784 Bing Ren, UCSD 3fa3a3aa893eb8131804ab7208e1c4f5 SRA:SRR3653220 https://www.encodeproject.org/files/ENCFF002APZ/@@download/ENCFF002APZ.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF220QZF bam unfiltered alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APZ, ENCFF806TVZ 2407710428 ENCODE Processing Pipeline 3023a43f6b1a7ab353b507b66ebc6f9a https://www.encodeproject.org/files/ENCFF220QZF/@@download/ENCFF220QZF.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF474YCJ bam unfiltered alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APW, ENCFF806TVZ 2406772111 ENCODE Processing Pipeline b6d74104bdc8ff06de20622de12bbf32 https://www.encodeproject.org/files/ENCFF474YCJ/@@download/ENCFF474YCJ.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF716BBX bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002APW, ENCFF806TVZ 1653871831 ENCODE Processing Pipeline 4f56acf58c903d129e7e0e039d2ee0e3 https://www.encodeproject.org/files/ENCFF716BBX/@@download/ENCFF716BBX.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF417WKH bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APZ, ENCFF806TVZ 1698652333 ENCODE Processing Pipeline 37f7a2b39a9380b89227f11caf526db1 https://www.encodeproject.org/files/ENCFF417WKH/@@download/ENCFF417WKH.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF088QFZ bam unfiltered alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002APW, ENCFF018NEO 2409378357 ENCODE Processing Pipeline 0b38f36b63706e2af584245f02b3993c https://www.encodeproject.org/files/ENCFF088QFZ/@@download/ENCFF088QFZ.bam mm10 released insufficient read depth for broad peaks control ENCFF123NRZ bam unfiltered alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002APZ, ENCFF018NEO 2410202020 ENCODE Processing Pipeline 0d5ae5ebc2d86fe2f5bbb9f1a53f5808 https://www.encodeproject.org/files/ENCFF123NRZ/@@download/ENCFF123NRZ.bam mm10 released insufficient read depth for broad peaks control ENCFF416UQK bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002APW, ENCFF018NEO 1653374276 ENCODE Processing Pipeline 3ed0f34ac34f9f4b5539f3cff15a0cd4 https://www.encodeproject.org/files/ENCFF416UQK/@@download/ENCFF416UQK.bam mm10 released insufficient read depth for broad peaks control ENCFF271IBK bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002APZ, ENCFF018NEO 1698158186 ENCODE Processing Pipeline 08ff47e5ca3ae1ac912316fb0cc09b34 https://www.encodeproject.org/files/ENCFF271IBK/@@download/ENCFF271IBK.bam mm10 released insufficient read depth for broad peaks control ENCFF034RBT bam unfiltered alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APW, ENCFF018NEO 1953202057 ENCODE Processing Pipeline defea8b585406070ece0c8b8a2383e02 https://www.encodeproject.org/files/ENCFF034RBT/@@download/ENCFF034RBT.bam mm10 released insufficient read depth for broad peaks control ENCFF750YDU bam unfiltered alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APZ, ENCFF018NEO 1954091122 ENCODE Processing Pipeline c3fe6aab5199763f6b02fc9fdf225325 https://www.encodeproject.org/files/ENCFF750YDU/@@download/ENCFF750YDU.bam mm10 released insufficient read depth for broad peaks control ENCFF963FIQ bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APZ, ENCFF018NEO 1285158067 ENCODE Processing Pipeline bcd0cee70a6f11c82a7bcc0031c7669e https://www.encodeproject.org/files/ENCFF963FIQ/@@download/ENCFF963FIQ.bam mm10 released insufficient read depth for broad peaks control ENCFF504TWB bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APW, ENCFF018NEO 1250485614 ENCODE Processing Pipeline 659265e0421c5199ec399d2225c3cf7a https://www.encodeproject.org/files/ENCFF504TWB/@@download/ENCFF504TWB.bam mm10 released insufficient read depth for broad peaks control ENCFF001LJE bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LJH 340540413 Bing Ren, UCSD 67905f0989ca2b7c3294f29dd4243d4f https://www.encodeproject.org/files/ENCFF001LJE/@@download/ENCFF001LJE.bam mm9 archived low read length, borderline replicate concordance insufficient read depth ENCFF001LJG bigBed broadPeak peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE ENCFF001YAE 245837 Bing Ren, UCSD 30ac5de0040e6ead084de86b1b7e16e7 https://www.encodeproject.org/files/ENCFF001LJG/@@download/ENCFF001LJG.bigBed mm9 archived low read length, borderline replicate concordance insufficient read depth ENCFF001LJH fasta reads ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 249052523 Bing Ren, UCSD 2ea18be19733a5f5713ede6c88ab52fe https://www.encodeproject.org/files/ENCFF001LJH/@@download/ENCFF001LJH.fasta.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length, borderline replicate concordance insufficient read depth ENCFF001LJI bigWig signal ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 76951994 Bing Ren, UCSD a294a68a4cc6834752848f3a35d6a3e8 https://www.encodeproject.org/files/ENCFF001LJI/@@download/ENCFF001LJI.bigWig mm9 archived low read length, borderline replicate concordance missing derived_from insufficient read depth ENCFF001LJJ bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LJQ 720050509 Bing Ren, UCSD d2f147b0b8344dfe916a956401b5f3f9 https://www.encodeproject.org/files/ENCFF001LJJ/@@download/ENCFF001LJJ.bam mm9 archived low read length, borderline replicate concordance insufficient read depth ENCFF001LJQ fastq reads ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 822306699 Bing Ren, UCSD b00a97de03447952720798bede9cc04a https://www.encodeproject.org/files/ENCFF001LJQ/@@download/ENCFF001LJQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length, borderline replicate concordance insufficient read depth ENCFF001YAE bed broadPeak peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 130748 Bing Ren, UCSD 7ae7fe4bf0dc0dd6b711537836498598 https://www.encodeproject.org/files/ENCFF001YAE/@@download/ENCFF001YAE.bed.gz mm9 archived low read length, borderline replicate concordance missing derived_from insufficient read depth ENCFF742VYE bam unfiltered alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJH, ENCFF018NEO 396299263 ENCODE Processing Pipeline 18e815a32b80ac9e0db782d37dc29e45 https://www.encodeproject.org/files/ENCFF742VYE/@@download/ENCFF742VYE.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF836UNU bam unfiltered alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJQ, ENCFF018NEO 893386888 ENCODE Processing Pipeline 5baccb8906f2f3777cfe99d6039d3417 https://www.encodeproject.org/files/ENCFF836UNU/@@download/ENCFF836UNU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF293JBU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJH, ENCFF018NEO 163556066 ENCODE Processing Pipeline 8fb31befa0c23d19c7365bb89c34b322 https://www.encodeproject.org/files/ENCFF293JBU/@@download/ENCFF293JBU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF129EIU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJQ, ENCFF018NEO 435974478 ENCODE Processing Pipeline 3de61622b63827f88f2ea2a60a2860bf https://www.encodeproject.org/files/ENCFF129EIU/@@download/ENCFF129EIU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF169GJM bigWig signal p-value ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 331502876 ENCODE Processing Pipeline 059775478177f64075e152ab33f402b0 https://www.encodeproject.org/files/ENCFF169GJM/@@download/ENCFF169GJM.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF893WZX bigWig signal p-value ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF129EIU, ENCFF439WCI, ENCFF683TKC 399033580 ENCODE Processing Pipeline 7b1fb7e9da63f06bcb30aa01ad2b1500 https://www.encodeproject.org/files/ENCFF893WZX/@@download/ENCFF893WZX.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF928LDR bigWig signal p-value ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF129EIU, ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 382174371 ENCODE Processing Pipeline 744ed365e302943e0b046946e65e3bb2 https://www.encodeproject.org/files/ENCFF928LDR/@@download/ENCFF928LDR.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF688FUL bigWig fold change over control ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 144458824 ENCODE Processing Pipeline d796322f01c01c0850d6ed707448498a https://www.encodeproject.org/files/ENCFF688FUL/@@download/ENCFF688FUL.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF978UAI bigWig fold change over control ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF129EIU, ENCFF439WCI, ENCFF683TKC 237414063 ENCODE Processing Pipeline e62edd28a8e709d74f6562a04579ee4c https://www.encodeproject.org/files/ENCFF978UAI/@@download/ENCFF978UAI.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF040HIS bigWig fold change over control ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF129EIU, ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 330775868 ENCODE Processing Pipeline d25c59b44578de5d54ea7a52dad7e66b https://www.encodeproject.org/files/ENCFF040HIS/@@download/ENCFF040HIS.bigWig mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF601PHQ bed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 2253871 ENCODE Processing Pipeline e51fc64100e755cff5e2c605b5e9c301 https://www.encodeproject.org/files/ENCFF601PHQ/@@download/ENCFF601PHQ.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF356JZY bed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF129EIU, ENCFF439WCI, ENCFF683TKC 2886383 ENCODE Processing Pipeline df063a137e2143b28babfd38475bca0d https://www.encodeproject.org/files/ENCFF356JZY/@@download/ENCFF356JZY.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF899LLH bed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF129EIU, ENCFF293JBU, ENCFF439WCI, ENCFF683TKC 793570 ENCODE Processing Pipeline 99945695fbe2d72ce40ef97c542632c1 https://www.encodeproject.org/files/ENCFF899LLH/@@download/ENCFF899LLH.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF132LYT bigBed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF601PHQ 4620032 ENCODE Processing Pipeline 745806fa1a5e97b902a1934af221ed72 https://www.encodeproject.org/files/ENCFF132LYT/@@download/ENCFF132LYT.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF384KYY bigBed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF356JZY 6724393 ENCODE Processing Pipeline b99074ff930eaf57f1db45ac52b8d322 https://www.encodeproject.org/files/ENCFF384KYY/@@download/ENCFF384KYY.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF100KMJ bigBed narrowPeak peaks and background as input for IDR ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF899LLH 1711102 ENCODE Processing Pipeline 6b669dcd89d3f5d7c7bd20539a73f0f9 https://www.encodeproject.org/files/ENCFF100KMJ/@@download/ENCFF100KMJ.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF333VYC bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF860MNF 182470 ENCODE Processing Pipeline 359cb468a8473e48050fffa74356fd4c https://www.encodeproject.org/files/ENCFF333VYC/@@download/ENCFF333VYC.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF860MNF bed narrowPeak conservative idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF356JZY, ENCFF547MET, ENCFF601PHQ, ENCFF899LLH 83378 ENCODE Processing Pipeline 70f3d01d9630418d612e552d77f89465 https://www.encodeproject.org/files/ENCFF860MNF/@@download/ENCFF860MNF.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF041IHJ bed narrowPeak optimal idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF356JZY, ENCFF547MET, ENCFF601PHQ, ENCFF899LLH 153885 ENCODE Processing Pipeline b92f3c2366b4b8b8419599a973f65253 https://www.encodeproject.org/files/ENCFF041IHJ/@@download/ENCFF041IHJ.bed.gz mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF481FZO bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF041IHJ 332872 ENCODE Processing Pipeline 42b9a193c3e64fd24c3bb8a85d6d3182 https://www.encodeproject.org/files/ENCFF481FZO/@@download/ENCFF481FZO.bigBed mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF001NWX bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NXH 438907422 Michael Snyder, Stanford 808ed36eb0c7be2f3ecf9ec6895f9e65 https://www.encodeproject.org/files/ENCFF001NWX/@@download/ENCFF001NWX.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NWZ bigBed narrowPeak peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJY 1351713 Michael Snyder, Stanford 36f3f93e0f524af8fef1c9f75bda0d92 https://www.encodeproject.org/files/ENCFF001NWZ/@@download/ENCFF001NWZ.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXC bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NXM 508667156 Michael Snyder, Stanford cb7bcb9294a20c8f7ddce95d79cce434 https://www.encodeproject.org/files/ENCFF001NXC/@@download/ENCFF001NXC.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXF bigWig signal ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWX, ENCFF001NXC 348529907 Michael Snyder, Stanford 8e7d0dd97c1ff66e2420613346e2b474 https://www.encodeproject.org/files/ENCFF001NXF/@@download/ENCFF001NXF.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXH fastq reads ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 858689441 Michael Snyder, Stanford 385d7609c8d1d408b527788dd1923f63 https://www.encodeproject.org/files/ENCFF001NXH/@@download/ENCFF001NXH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NXM fastq reads ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1063047092 Michael Snyder, Stanford 194e6ba808b821b58a733bf1919b6bff https://www.encodeproject.org/files/ENCFF001NXM/@@download/ENCFF001NXM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJY bed narrowPeak peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NWX, ENCFF001NXC 564681 Michael Snyder, Stanford 7310e08cff2d19e3881a8413463c9b9c https://www.encodeproject.org/files/ENCFF001YJY/@@download/ENCFF001YJY.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF062DXL bam unfiltered alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NXM, ENCFF018NEO 1214724652 ENCODE Processing Pipeline f3dfcfb20548c56557971fc8dab38afc https://www.encodeproject.org/files/ENCFF062DXL/@@download/ENCFF062DXL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF574JIG bam unfiltered alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NXH, ENCFF018NEO 1015604756 ENCODE Processing Pipeline 3d6f3dd47c4b08c0784d06ab751a182d https://www.encodeproject.org/files/ENCFF574JIG/@@download/ENCFF574JIG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF519PSU bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NXH, ENCFF018NEO 664293173 ENCODE Processing Pipeline a8835cbd7ee728bf48c5a1a6577973cd https://www.encodeproject.org/files/ENCFF519PSU/@@download/ENCFF519PSU.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF786RTQ bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NXM, ENCFF018NEO 772677950 ENCODE Processing Pipeline 36232cfe11097e844d76e0eb563c7bc8 https://www.encodeproject.org/files/ENCFF786RTQ/@@download/ENCFF786RTQ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF391BRG bigWig signal p-value ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF519PSU, ENCFF786RTQ 287249889 ENCODE Processing Pipeline 44b6197b3e31ea53c09652dd89ffcf3b https://www.encodeproject.org/files/ENCFF391BRG/@@download/ENCFF391BRG.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF246EZG bed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF519PSU, ENCFF786RTQ 6185724 ENCODE Processing Pipeline 6931119bed865f096a1e9523571a6ce7 https://www.encodeproject.org/files/ENCFF246EZG/@@download/ENCFF246EZG.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF663WMT bigWig fold change over control ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF786RTQ 321880450 ENCODE Processing Pipeline 547d6f34e9e70237a14553ef02f6338d https://www.encodeproject.org/files/ENCFF663WMT/@@download/ENCFF663WMT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF168AXR bigWig signal p-value ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF519PSU 287776415 ENCODE Processing Pipeline 161f925be96451bfff96269c1def9771 https://www.encodeproject.org/files/ENCFF168AXR/@@download/ENCFF168AXR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF350HYX bigWig fold change over control ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF519PSU 289823736 ENCODE Processing Pipeline a1895631d927fd3121619421d33e6085 https://www.encodeproject.org/files/ENCFF350HYX/@@download/ENCFF350HYX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF266YOT bigWig fold change over control ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF519PSU, ENCFF786RTQ 520110606 ENCODE Processing Pipeline fd3bc9a1edfd4ed34e629d005b5a31a1 https://www.encodeproject.org/files/ENCFF266YOT/@@download/ENCFF266YOT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF515QSC bigWig signal p-value ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF786RTQ 297790068 ENCODE Processing Pipeline fddf16967164c2990545c4a2cee6f79b https://www.encodeproject.org/files/ENCFF515QSC/@@download/ENCFF515QSC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF359VYL bed narrowPeak conservative idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF246EZG, ENCFF304STF, ENCFF472IDT, ENCFF547MET 692140 ENCODE Processing Pipeline 9f906764d62ad579e019c3990aa0853e https://www.encodeproject.org/files/ENCFF359VYL/@@download/ENCFF359VYL.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF700YID bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF359VYL 1295622 ENCODE Processing Pipeline f5aa8181fccbcf29ac2b0e77584a3f1d https://www.encodeproject.org/files/ENCFF700YID/@@download/ENCFF700YID.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF304STF bed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF519PSU 5308863 ENCODE Processing Pipeline 83cf9079db570070a3917ae273311240 https://www.encodeproject.org/files/ENCFF304STF/@@download/ENCFF304STF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF472IDT bed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF786RTQ 5449832 ENCODE Processing Pipeline 4ff026b5ea2688ed3883f9278053bafa https://www.encodeproject.org/files/ENCFF472IDT/@@download/ENCFF472IDT.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF314GDU bigBed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF304STF 12809034 ENCODE Processing Pipeline 499b64ac6b3ac530587868d242a816d2 https://www.encodeproject.org/files/ENCFF314GDU/@@download/ENCFF314GDU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF666ZLX bigBed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF472IDT 12868691 ENCODE Processing Pipeline c7ec8fc94539d34f7b3666e237a9bd2c https://www.encodeproject.org/files/ENCFF666ZLX/@@download/ENCFF666ZLX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF227EPU bigBed narrowPeak peaks and background as input for IDR ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF246EZG 13221850 ENCODE Processing Pipeline 957f7f5d69d1e6251738afe31bb98488 https://www.encodeproject.org/files/ENCFF227EPU/@@download/ENCFF227EPU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF375GXQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF246EZG, ENCFF304STF, ENCFF472IDT, ENCFF547MET 768067 ENCODE Processing Pipeline 9ba1154a14e969ac2d6f2c90cf2a5013 https://www.encodeproject.org/files/ENCFF375GXQ/@@download/ENCFF375GXQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF057AZA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF375GXQ 1407097 ENCODE Processing Pipeline aa0b27f3e456a8b7b934ac1f027289f1 https://www.encodeproject.org/files/ENCFF057AZA/@@download/ENCFF057AZA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001MQG bam alignments ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQO 1703647291 Ross Hardison, PennState ebd27a45b04c9ba626d0f03fba45f1d3 https://www.encodeproject.org/files/ENCFF001MQG/@@download/ENCFF001MQG.bam mm9 released low read length, inconsistent platforms ENCFF001MQH bigBed broadPeak peaks ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFN 561586 Ross Hardison, PennState 389826caa3dbf5e2f84b5d4f04da58e7 https://www.encodeproject.org/files/ENCFF001MQH/@@download/ENCFF001MQH.bigBed mm9 released low read length, inconsistent platforms ENCFF001MQI bigWig signal ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4122031127 Ross Hardison, PennState df3b4f13ee040da079333b2d3e5e3a27 https://www.encodeproject.org/files/ENCFF001MQI/@@download/ENCFF001MQI.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MQO fastq reads ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1376463661 Ross Hardison, PennState 27eed82facb2a01ee8f4fe16e9b5f7f6 https://www.encodeproject.org/files/ENCFF001MQO/@@download/ENCFF001MQO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MRI/ released low read length, inconsistent platforms, inconsistent control read length ENCFF001YFN bed broadPeak peaks ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 256915 Ross Hardison, PennState 94b3f3746cffe13e23a98f8eb03a1770 https://www.encodeproject.org/files/ENCFF001YFN/@@download/ENCFF001YFN.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF029KEW bam unfiltered alignments ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQO, ENCFF018NEO 1800080374 ENCODE Processing Pipeline 43564922cc5b1e4f79d3c9625eb97690 https://www.encodeproject.org/files/ENCFF029KEW/@@download/ENCFF029KEW.bam mm10 released low read length, inconsistent platforms ENCFF242LAJ bam alignments ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQO, ENCFF018NEO 1272805430 ENCODE Processing Pipeline 9d9071d9c436caff72f6a81cc8ce5bc8 https://www.encodeproject.org/files/ENCFF242LAJ/@@download/ENCFF242LAJ.bam mm10 released low read length, inconsistent platforms ENCFF001KMG bam alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KMW 1431125769 Bing Ren, UCSD 8747b97ee36ae1d48ca58b120b114efc https://www.encodeproject.org/files/ENCFF001KMG/@@download/ENCFF001KMG.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KML bigBed broadPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXX 744747 Bing Ren, UCSD 81420cddf3b61d840340edf2d6a580fb https://www.encodeproject.org/files/ENCFF001KML/@@download/ENCFF001KML.bigBed mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMM bigWig signal ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KMG, ENCFF001KMN 74052593 Bing Ren, UCSD 8772e494ccf3abbe0df21d2b559f4939 https://www.encodeproject.org/files/ENCFF001KMM/@@download/ENCFF001KMM.bigWig mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMN bam alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KMV 924368076 Bing Ren, UCSD 644b36ce160968652bfd4ad06a627b08 https://www.encodeproject.org/files/ENCFF001KMN/@@download/ENCFF001KMN.bam mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMV fastq reads ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 902654068 Bing Ren, UCSD e8a3b6cc82b4637185cdf444f019574a https://www.encodeproject.org/files/ENCFF001KMV/@@download/ENCFF001KMV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNY/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KMW fastq reads ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 1383332150 Bing Ren, UCSD fbb9d5647a472613a40dee61e5e152a8 https://www.encodeproject.org/files/ENCFF001KMW/@@download/ENCFF001KMW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNX/ released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XXX bed broadPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KMG, ENCFF001KMN 406035 Bing Ren, UCSD 13bb27cd1a5f6d7c5166aed893796f38 https://www.encodeproject.org/files/ENCFF001XXX/@@download/ENCFF001XXX.bed.gz mm9 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF961TRD bam unfiltered alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMW, ENCFF018NEO 1573089895 ENCODE Processing Pipeline ba10d7f5793c4153eecdaa36faa1abcb https://www.encodeproject.org/files/ENCFF961TRD/@@download/ENCFF961TRD.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF567HIW bam unfiltered alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMV, ENCFF018NEO 1016048811 ENCODE Processing Pipeline 1322a79359d5c039f1e5b347e176523e https://www.encodeproject.org/files/ENCFF567HIW/@@download/ENCFF567HIW.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF254XUS bam alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMV, ENCFF018NEO 568490076 ENCODE Processing Pipeline 82a6a6cebec94f762fb314b1b12633bb https://www.encodeproject.org/files/ENCFF254XUS/@@download/ENCFF254XUS.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF803QFK bam alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMW, ENCFF018NEO 873777060 ENCODE Processing Pipeline 5f7a9f5ef1db3fabfa0e9fcd764377dd https://www.encodeproject.org/files/ENCFF803QFK/@@download/ENCFF803QFK.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF581ZRF bed narrowPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF803QFK 1202165 ENCODE Processing Pipeline e4ea18c05fbd80a992ab51f194b37cde https://www.encodeproject.org/files/ENCFF581ZRF/@@download/ENCFF581ZRF.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF429PBK bed narrowPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF254XUS, ENCFF465JMB, ENCFF515GCB 1732233 ENCODE Processing Pipeline c5d78d6a2278948efe2db9b10dfdae7e https://www.encodeproject.org/files/ENCFF429PBK/@@download/ENCFF429PBK.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF401GXG bed narrowPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF254XUS, ENCFF465JMB, ENCFF515GCB, ENCFF803QFK 432080 ENCODE Processing Pipeline 6534e83f421bd1a19e50d5222a0de13c https://www.encodeproject.org/files/ENCFF401GXG/@@download/ENCFF401GXG.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF183XYT bigBed narrowPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF581ZRF 3156923 ENCODE Processing Pipeline e16547dc3cd998f4d08bc0d5a14fd5f4 https://www.encodeproject.org/files/ENCFF183XYT/@@download/ENCFF183XYT.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF020KII bigBed narrowPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF429PBK 3059164 ENCODE Processing Pipeline 0f449610f1e50eba16580295cb0f95c4 https://www.encodeproject.org/files/ENCFF020KII/@@download/ENCFF020KII.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF474GFH bigBed narrowPeak peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF401GXG 1187344 ENCODE Processing Pipeline 41625f81a1695eb93de178ba3d9e8527 https://www.encodeproject.org/files/ENCFF474GFH/@@download/ENCFF474GFH.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF247RJV bigWig signal p-value ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF254XUS, ENCFF465JMB, ENCFF515GCB 352535938 ENCODE Processing Pipeline b75eb9cd2cf01b846678d9aaa3ac0926 https://www.encodeproject.org/files/ENCFF247RJV/@@download/ENCFF247RJV.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF346UKS bigWig signal p-value ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF803QFK 391244524 ENCODE Processing Pipeline 7fc88369cc583226833f3979375bdb72 https://www.encodeproject.org/files/ENCFF346UKS/@@download/ENCFF346UKS.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF781DNM bigWig fold change over control ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF803QFK 376886134 ENCODE Processing Pipeline c1d729f30c2c7d91ca74bfdddc0621ea https://www.encodeproject.org/files/ENCFF781DNM/@@download/ENCFF781DNM.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF925EHI bigWig signal p-value ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF254XUS, ENCFF465JMB, ENCFF515GCB, ENCFF803QFK 427690787 ENCODE Processing Pipeline 80660868726ae89a24129806dc957ee4 https://www.encodeproject.org/files/ENCFF925EHI/@@download/ENCFF925EHI.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF444RSO bigWig fold change over control ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF254XUS, ENCFF465JMB, ENCFF515GCB 263667202 ENCODE Processing Pipeline 9df1c92251aa6e2731c011bc8cc55ee2 https://www.encodeproject.org/files/ENCFF444RSO/@@download/ENCFF444RSO.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF172GJQ bigWig fold change over control ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF254XUS, ENCFF465JMB, ENCFF515GCB, ENCFF803QFK 537469863 ENCODE Processing Pipeline 5c6f1e7635b0471a647adebf51522a4c https://www.encodeproject.org/files/ENCFF172GJQ/@@download/ENCFF172GJQ.bigWig mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF506DLC bed narrowPeak replicated peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF401GXG, ENCFF429PBK, ENCFF581ZRF 390477 ENCODE Processing Pipeline bc35678266064512cb8661a1e0d9f8a4 https://www.encodeproject.org/files/ENCFF506DLC/@@download/ENCFF506DLC.bed.gz mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF310WIV bigBed narrowPeak replicated peaks ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF506DLC 947980 ENCODE Processing Pipeline 9c1f83a9ae1d5e37dde7e880ebd9c1f2 https://www.encodeproject.org/files/ENCFF310WIV/@@download/ENCFF310WIV.bigBed mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF002AHV fastq reads ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1198529782 Bing Ren, UCSD 6bdeedfae8bdb2c0cfc57c1930664ae7 SRA:SRR3653329 https://www.encodeproject.org/files/ENCFF002AHV/@@download/ENCFF002AHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APX/ released low read length, control low read depth, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF002AHW fastq reads ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1369942350 Bing Ren, UCSD 7508766f32ef0e6875702e86993c611a SRA:SRR3653330 https://www.encodeproject.org/files/ENCFF002AHW/@@download/ENCFF002AHW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQA/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF209RBB bam alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHW, ENCFF806TVZ 1061456263 ENCODE Processing Pipeline b736e147955511c031d7bd4a4ed066d9 https://www.encodeproject.org/files/ENCFF209RBB/@@download/ENCFF209RBB.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF197BTK bam alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHV, ENCFF806TVZ 928847146 ENCODE Processing Pipeline dd7dea92dbfc16edd423a1a7a4156be0 https://www.encodeproject.org/files/ENCFF197BTK/@@download/ENCFF197BTK.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF830BRS bed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF209RBB, ENCFF775YLK 3082696 ENCODE Processing Pipeline 4b484183ece75a7ced816daa00a01a1d https://www.encodeproject.org/files/ENCFF830BRS/@@download/ENCFF830BRS.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF904XOM bed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF197BTK, ENCFF775YLK 2755485 ENCODE Processing Pipeline 0c30f5b8a49ead7b9b0862834e4447ec https://www.encodeproject.org/files/ENCFF904XOM/@@download/ENCFF904XOM.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF285QEF bed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF197BTK, ENCFF209RBB, ENCFF775YLK 2457924 ENCODE Processing Pipeline dbf011f46aff8a3052ebd45f0f2935bf https://www.encodeproject.org/files/ENCFF285QEF/@@download/ENCFF285QEF.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF371XJH bigBed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF904XOM 5855138 ENCODE Processing Pipeline 91ffbe45630db0451c43f034f7131f51 https://www.encodeproject.org/files/ENCFF371XJH/@@download/ENCFF371XJH.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF684IOG bigBed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF285QEF 5189374 ENCODE Processing Pipeline 4b37c4b2518187259d4192d27b14374c https://www.encodeproject.org/files/ENCFF684IOG/@@download/ENCFF684IOG.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF646CDS bigBed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF830BRS 6638460 ENCODE Processing Pipeline b3c9c1f3d7d5e0667cbb4078fba3fc5d https://www.encodeproject.org/files/ENCFF646CDS/@@download/ENCFF646CDS.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF221VPE bigWig signal p-value ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF197BTK, ENCFF775YLK 540587949 ENCODE Processing Pipeline cc6e6b181d9b664421a770c15378caf5 https://www.encodeproject.org/files/ENCFF221VPE/@@download/ENCFF221VPE.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF985DTQ bigWig signal p-value ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF209RBB, ENCFF775YLK 609358125 ENCODE Processing Pipeline b6bf04b2cb8050b57b9df6accacf73f5 https://www.encodeproject.org/files/ENCFF985DTQ/@@download/ENCFF985DTQ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF628AKU bigWig fold change over control ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF009SMR, ENCFF197BTK, ENCFF775YLK 461174729 ENCODE Processing Pipeline aeb7f1e2b14ac97c6dd995ce8ac4d58e https://www.encodeproject.org/files/ENCFF628AKU/@@download/ENCFF628AKU.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF193NCQ bigWig signal p-value ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF197BTK, ENCFF209RBB, ENCFF775YLK 724069271 ENCODE Processing Pipeline 9f95b95aaeee5ef60a2ca6bd1aa16217 https://www.encodeproject.org/files/ENCFF193NCQ/@@download/ENCFF193NCQ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF968LII bigWig fold change over control ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009SMR, ENCFF209RBB, ENCFF775YLK 518075182 ENCODE Processing Pipeline adb46d4f34339aacdc16049950567380 https://www.encodeproject.org/files/ENCFF968LII/@@download/ENCFF968LII.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF776BHU bigWig fold change over control ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009SMR, ENCFF197BTK, ENCFF209RBB, ENCFF775YLK 750218600 ENCODE Processing Pipeline e22d5687a7ddc483459e8e72b26398cb https://www.encodeproject.org/files/ENCFF776BHU/@@download/ENCFF776BHU.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF565ASI bed narrowPeak replicated peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF285QEF, ENCFF830BRS, ENCFF904XOM 2196031 ENCODE Processing Pipeline 8b8786f5200e4083fbc2165f55de18bd https://www.encodeproject.org/files/ENCFF565ASI/@@download/ENCFF565ASI.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF211ANO bigBed narrowPeak replicated peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF565ASI 3825784 ENCODE Processing Pipeline cee0b85633516d0cf19800ffc78a87ea https://www.encodeproject.org/files/ENCFF211ANO/@@download/ENCFF211ANO.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF849XZF bam unfiltered alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHW, ENCFF018NEO 1482804781 ENCODE Processing Pipeline 208d55bfa0bb814ba6f90f43062c029f https://www.encodeproject.org/files/ENCFF849XZF/@@download/ENCFF849XZF.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF491FUM bam unfiltered alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHV, ENCFF018NEO 1301173117 ENCODE Processing Pipeline 0617d88e2bae03560bdedee512702674 https://www.encodeproject.org/files/ENCFF491FUM/@@download/ENCFF491FUM.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF588ALD bam alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHW, ENCFF018NEO 1061213535 ENCODE Processing Pipeline a09748b118422df941c44fa448329e27 https://www.encodeproject.org/files/ENCFF588ALD/@@download/ENCFF588ALD.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF273SIC bam alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHV, ENCFF018NEO 928657512 ENCODE Processing Pipeline 3c2bc8c0cec5c0f66e1e536b6fcc731f https://www.encodeproject.org/files/ENCFF273SIC/@@download/ENCFF273SIC.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF419ESN bed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF273SIC, ENCFF588ALD, ENCFF831XWF, ENCFF911DNW 2642949 ENCODE Processing Pipeline 0e59f9bf0201877e454325c7667da202 https://www.encodeproject.org/files/ENCFF419ESN/@@download/ENCFF419ESN.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF917CKP bed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF588ALD, ENCFF911DNW 2443634 ENCODE Processing Pipeline 70efb8857645ba1c0a44f0886cbddaa8 https://www.encodeproject.org/files/ENCFF917CKP/@@download/ENCFF917CKP.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF309RCA bigBed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF870FLP 5310081 ENCODE Processing Pipeline 89eb9e432b1ff1200b0b4f5fa36c8f37 https://www.encodeproject.org/files/ENCFF309RCA/@@download/ENCFF309RCA.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF870FLP bed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF273SIC, ENCFF831XWF, ENCFF911DNW 2468724 ENCODE Processing Pipeline 81f59e8971be815ce68ad8595c385bbf https://www.encodeproject.org/files/ENCFF870FLP/@@download/ENCFF870FLP.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF682AIV bigBed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF917CKP 5304565 ENCODE Processing Pipeline 0b8c4a6f7c9138c068459755f5b62608 https://www.encodeproject.org/files/ENCFF682AIV/@@download/ENCFF682AIV.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF987CQP bigBed narrowPeak peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF419ESN 5656700 ENCODE Processing Pipeline a1685703d3cbf90477e66600d77dba5b https://www.encodeproject.org/files/ENCFF987CQP/@@download/ENCFF987CQP.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF988UUY bigWig signal p-value ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF273SIC, ENCFF831XWF, ENCFF911DNW 504694783 ENCODE Processing Pipeline 128d6753cfdd503fda9f49b7d8838491 https://www.encodeproject.org/files/ENCFF988UUY/@@download/ENCFF988UUY.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF390XES bigWig signal p-value ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF588ALD, ENCFF911DNW 400564012 ENCODE Processing Pipeline a63cf7bd34c01cce07ccd84192061b4c https://www.encodeproject.org/files/ENCFF390XES/@@download/ENCFF390XES.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF018IUR bigWig signal p-value ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF273SIC, ENCFF588ALD, ENCFF831XWF, ENCFF911DNW 762956100 ENCODE Processing Pipeline f9359d2750ca80cf20f7a742a0a737c2 https://www.encodeproject.org/files/ENCFF018IUR/@@download/ENCFF018IUR.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF588WRS bigWig fold change over control ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF273SIC, ENCFF831XWF, ENCFF911DNW 467443137 ENCODE Processing Pipeline 0250e5cebe5522549b90d483886da6f1 https://www.encodeproject.org/files/ENCFF588WRS/@@download/ENCFF588WRS.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF986DZL bigWig fold change over control ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF588ALD, ENCFF911DNW 411462979 ENCODE Processing Pipeline 7f5cb9973502f77cf0cf223ee54b5969 https://www.encodeproject.org/files/ENCFF986DZL/@@download/ENCFF986DZL.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF224DGI bigWig fold change over control ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF273SIC, ENCFF588ALD, ENCFF831XWF, ENCFF911DNW 805348434 ENCODE Processing Pipeline b535c035bd2d2a29836d3f1b7c98c7b0 https://www.encodeproject.org/files/ENCFF224DGI/@@download/ENCFF224DGI.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF554BTF bed narrowPeak replicated peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF419ESN, ENCFF870FLP, ENCFF917CKP 2271998 ENCODE Processing Pipeline 99766045e61ba4ede55623f77230c51e https://www.encodeproject.org/files/ENCFF554BTF/@@download/ENCFF554BTF.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF149MJZ bigBed narrowPeak replicated peaks ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF554BTF 3932999 ENCODE Processing Pipeline a041d5a497f11fa270b2fc8feaa87b23 https://www.encodeproject.org/files/ENCFF149MJZ/@@download/ENCFF149MJZ.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF002ADK fastq reads ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 48 single-ended 1994901181 Ross Hardison, PennState 913ad45f406193014a6ce41fbf87c51f https://www.encodeproject.org/files/ENCFF002ADK/@@download/ENCFF002ADK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZYW/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADL bigWig signal ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 4516225950 Ross Hardison, PennState 9fe4624297cd9e8f2c7b4ba019026121 https://www.encodeproject.org/files/ENCFF002ADL/@@download/ENCFF002ADL.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADM fastq reads ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 48 single-ended 1982912528 Ross Hardison, PennState a67834f4970f6c561be75aa305c2c135 https://www.encodeproject.org/files/ENCFF002ADM/@@download/ENCFF002ADM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZYX/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADN bigWig signal ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 4652265522 Ross Hardison, PennState 695d247b28c6ac0ab2d2e5029233c69d https://www.encodeproject.org/files/ENCFF002ADN/@@download/ENCFF002ADN.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADO bigWig signal ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 4800422599 Ross Hardison, PennState 6f7ba022ac2c7658131608e64482eb07 https://www.encodeproject.org/files/ENCFF002ADO/@@download/ENCFF002ADO.bigWig mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADP bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF002ADK 2243728860 Ross Hardison, PennState b8ff51239e79a47a91993c15b33e1c08 https://www.encodeproject.org/files/ENCFF002ADP/@@download/ENCFF002ADP.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADQ bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF002ADM 2248155130 Ross Hardison, PennState 14201d3c95cd78e5c85de401490fc1b9 https://www.encodeproject.org/files/ENCFF002ADQ/@@download/ENCFF002ADQ.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADR bigBed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 341945 Ross Hardison, PennState 18a549617f5a9339ac6f235e2b17d883 https://www.encodeproject.org/files/ENCFF002ADR/@@download/ENCFF002ADR.bigBed mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADS bigBed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 218368 Ross Hardison, PennState 56943eeda83fff5f84caef368f3dd5d3 https://www.encodeproject.org/files/ENCFF002ADS/@@download/ENCFF002ADS.bigBed mm9 released low read length, mild to moderate bottlenecking missing derived_from, experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002ADT bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 4475569314 Ross Hardison, PennState 1993e0c39414fc5888118772ccaaeab4 https://www.encodeproject.org/files/ENCFF002ADT/@@download/ENCFF002ADT.bam mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF679LQY bed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE ENCFF002ADS 72075 ENCODE Consortium 6e0616d7ae014bb73d77737edd002f51 https://www.encodeproject.org/files/ENCFF679LQY/@@download/ENCFF679LQY.bed.gz mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF675MLK bed bed9 peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE ENCFF002ADR 89346 ENCODE Consortium 887d20cec92d5327c3881356e1dc553a https://www.encodeproject.org/files/ENCFF675MLK/@@download/ENCFF675MLK.bed.gz mm9 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF967JEP bam unfiltered alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 48 ENCFF002ADK, ENCFF018NEO 2419817528 ENCODE Processing Pipeline a92d7d8cec8e474f7ae1de1c8d41dd0b https://www.encodeproject.org/files/ENCFF967JEP/@@download/ENCFF967JEP.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF524MXM bam unfiltered alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 48 ENCFF002ADM, ENCFF018NEO 2412109522 ENCODE Processing Pipeline 9bab74594798502ae45f456949638240 https://www.encodeproject.org/files/ENCFF524MXM/@@download/ENCFF524MXM.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF499OEU bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 48 ENCFF002ADK, ENCFF018NEO 1361538084 ENCODE Processing Pipeline 8b81e8e11912bb703fbade9817beee30 https://www.encodeproject.org/files/ENCFF499OEU/@@download/ENCFF499OEU.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF464OJW bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 48 ENCFF002ADM, ENCFF018NEO 1485166553 ENCODE Processing Pipeline 610792b19b7adcda3a97a95da9dbc80b https://www.encodeproject.org/files/ENCFF464OJW/@@download/ENCFF464OJW.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF384CZR bigBed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF436NIK 13524347 ENCODE Processing Pipeline 47077de0491c728619e2816a785954a1 https://www.encodeproject.org/files/ENCFF384CZR/@@download/ENCFF384CZR.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF458BGT bed narrowPeak optimal idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF034VDK, ENCFF436NIK, ENCFF547MET, ENCFF762AWW 414781 ENCODE Processing Pipeline 90b68db67e07d20a12671ce2763be882 https://www.encodeproject.org/files/ENCFF458BGT/@@download/ENCFF458BGT.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF303VMI bigWig signal p-value ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF464OJW, ENCFF499OEU, ENCFF549GXA, ENCFF717OFJ 1123336218 ENCODE Processing Pipeline ebd593d1ffd75760d854ebf272787a00 https://www.encodeproject.org/files/ENCFF303VMI/@@download/ENCFF303VMI.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF034VDK bed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF464OJW, ENCFF499OEU, ENCFF549GXA, ENCFF717OFJ 5157825 ENCODE Processing Pipeline 08e48234abf7659e9bf88d6bbe2b26ec https://www.encodeproject.org/files/ENCFF034VDK/@@download/ENCFF034VDK.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF649NXY bigBed narrowPeak conservative idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF152KNZ 360597 ENCODE Processing Pipeline 7db41e46be6d1df732e83435869fe8c2 https://www.encodeproject.org/files/ENCFF649NXY/@@download/ENCFF649NXY.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF206IDS bigWig fold change over control ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF464OJW, ENCFF549GXA 618820289 ENCODE Processing Pipeline e01221b679e7a28a038f6c9523e9369c https://www.encodeproject.org/files/ENCFF206IDS/@@download/ENCFF206IDS.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF175WAA bigBed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF034VDK 8622559 ENCODE Processing Pipeline 67dbd3038518c1ddb74a64a2879110c3 https://www.encodeproject.org/files/ENCFF175WAA/@@download/ENCFF175WAA.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF762AWW bed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF499OEU, ENCFF717OFJ 5770162 ENCODE Processing Pipeline 51ac443f9fc37dd7e378f3c210839292 https://www.encodeproject.org/files/ENCFF762AWW/@@download/ENCFF762AWW.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF488HXY bigWig signal p-value ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF499OEU, ENCFF717OFJ 605729310 ENCODE Processing Pipeline 5307c8e6520785c2dbe8be05d282e6c3 https://www.encodeproject.org/files/ENCFF488HXY/@@download/ENCFF488HXY.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF325XMK bigWig signal p-value ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF464OJW, ENCFF549GXA 560018933 ENCODE Processing Pipeline 8c091b80291072aee5a985631be93862 https://www.encodeproject.org/files/ENCFF325XMK/@@download/ENCFF325XMK.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF086XQV bigWig fold change over control ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF499OEU, ENCFF717OFJ 625968857 ENCODE Processing Pipeline 8995fa841a6cad7c638b72d0d60fe5f8 https://www.encodeproject.org/files/ENCFF086XQV/@@download/ENCFF086XQV.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF436NIK bed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF464OJW, ENCFF549GXA 6026105 ENCODE Processing Pipeline 2e99a61c820b90d8b8f4c0b209cf120c https://www.encodeproject.org/files/ENCFF436NIK/@@download/ENCFF436NIK.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF341JZR bigBed narrowPeak peaks and background as input for IDR ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF762AWW 11276960 ENCODE Processing Pipeline 2b162dc7ba4c4340be204f6f2487dc89 https://www.encodeproject.org/files/ENCFF341JZR/@@download/ENCFF341JZR.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF888LEV bigBed narrowPeak optimal idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF458BGT 874049 ENCODE Processing Pipeline f07095f7adc89d5a72ad309a4823d54f https://www.encodeproject.org/files/ENCFF888LEV/@@download/ENCFF888LEV.bigBed mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF353ZBQ bigWig fold change over control ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF464OJW, ENCFF499OEU, ENCFF549GXA, ENCFF717OFJ 1244228287 ENCODE Processing Pipeline 36da6f6cfa239ddcc50ecbcf72d174c4 https://www.encodeproject.org/files/ENCFF353ZBQ/@@download/ENCFF353ZBQ.bigWig mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF152KNZ bed narrowPeak conservative idr thresholded peaks ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF034VDK, ENCFF436NIK, ENCFF547MET, ENCFF762AWW 158673 ENCODE Processing Pipeline 7973b8a29cd72f06cc8b8b83563ab057 https://www.encodeproject.org/files/ENCFF152KNZ/@@download/ENCFF152KNZ.bed.gz mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF002AHA fastq reads ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 726076971 Bing Ren, UCSD 12a7bd84cae9928b328c97c50b425c0e SRA:SRR3653380 https://www.encodeproject.org/files/ENCFF002AHA/@@download/ENCFF002AHA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARB/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AHG fastq reads ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 998833876 Bing Ren, UCSD 52e523840cc2a639d226ca2d7fcddbf7 SRA:SRR3653382 https://www.encodeproject.org/files/ENCFF002AHG/@@download/ENCFF002AHG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQW/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF254PMM fastq reads ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 847228376 Bing Ren, UCSD 8aa8bf44cd168869d60c9041bfac86d4 SRA:SRR3653381 https://www.encodeproject.org/files/ENCFF254PMM/@@download/ENCFF254PMM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARB/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF675CSU fastq reads ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 351458577 Bing Ren, UCSD 03909aba590920aff5aa913409ba5e06 SRA:SRR3653383 https://www.encodeproject.org/files/ENCFF675CSU/@@download/ENCFF675CSU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF300OGH bam alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHA, ENCFF254PMM, ENCFF806TVZ 1345053580 ENCODE Processing Pipeline dc13ccd3d2a8bdf49a97b76c01c036f6 https://www.encodeproject.org/files/ENCFF300OGH/@@download/ENCFF300OGH.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF600PAE bam alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHG, ENCFF675CSU, ENCFF806TVZ 1136276259 ENCODE Processing Pipeline 720fdeab94fed004b41619337d936eb4 https://www.encodeproject.org/files/ENCFF600PAE/@@download/ENCFF600PAE.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF884NZD bed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF300OGH, ENCFF819FNM 1278235 ENCODE Processing Pipeline 077df305dde97e0c0542a84cb1713b74 https://www.encodeproject.org/files/ENCFF884NZD/@@download/ENCFF884NZD.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF575ACJ bed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF600PAE, ENCFF819FNM 872446 ENCODE Processing Pipeline a7e5e689c7d54453eb0aa81e14975897 https://www.encodeproject.org/files/ENCFF575ACJ/@@download/ENCFF575ACJ.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF250RSS bed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF300OGH, ENCFF600PAE, ENCFF819FNM 698818 ENCODE Processing Pipeline 2a40bdfcbaafdaac98ce60190be5837e https://www.encodeproject.org/files/ENCFF250RSS/@@download/ENCFF250RSS.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF821BOC bigBed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF575ACJ 1880921 ENCODE Processing Pipeline 5ba7f518c26b379ae6e5da6628aac39d https://www.encodeproject.org/files/ENCFF821BOC/@@download/ENCFF821BOC.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF024TLA bigBed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF884NZD 2639534 ENCODE Processing Pipeline 85cf2df5c2bc189bfce1ac03b47c3259 https://www.encodeproject.org/files/ENCFF024TLA/@@download/ENCFF024TLA.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF481LDS bigWig signal p-value ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF600PAE, ENCFF819FNM 487211484 ENCODE Processing Pipeline 4713d89889fec7c914cabb329ed00451 https://www.encodeproject.org/files/ENCFF481LDS/@@download/ENCFF481LDS.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF635QTB bigBed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF250RSS 1460491 ENCODE Processing Pipeline 22028570bd489dea4bd27c4e519e66fc https://www.encodeproject.org/files/ENCFF635QTB/@@download/ENCFF635QTB.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF909FKU bigWig fold change over control ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF300OGH, ENCFF819FNM 518483334 ENCODE Processing Pipeline 3dffd7e70810d8f97bfffbd304af46cb https://www.encodeproject.org/files/ENCFF909FKU/@@download/ENCFF909FKU.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF756PZH bigWig signal p-value ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF300OGH, ENCFF819FNM 447833384 ENCODE Processing Pipeline cad164a311d237d678552062898dc9a5 https://www.encodeproject.org/files/ENCFF756PZH/@@download/ENCFF756PZH.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF411EQM bigWig fold change over control ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF600PAE, ENCFF819FNM 481400754 ENCODE Processing Pipeline 4ad81e0d6fdcea900776f9e20d765bc1 https://www.encodeproject.org/files/ENCFF411EQM/@@download/ENCFF411EQM.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF312GIB bigWig signal p-value ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF300OGH, ENCFF600PAE, ENCFF819FNM 711962663 ENCODE Processing Pipeline 1956cee7a80c2e6abb152f3659cbf22c https://www.encodeproject.org/files/ENCFF312GIB/@@download/ENCFF312GIB.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF463IZL bigWig fold change over control ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF300OGH, ENCFF600PAE, ENCFF819FNM 848850241 ENCODE Processing Pipeline c761b0b2779cf700a582525e24cbea75 https://www.encodeproject.org/files/ENCFF463IZL/@@download/ENCFF463IZL.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF050TNP bigBed narrowPeak replicated peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF864YRL 1308774 ENCODE Processing Pipeline 299c91333373e489db1d9da6b03bd07f https://www.encodeproject.org/files/ENCFF050TNP/@@download/ENCFF050TNP.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF864YRL bed narrowPeak replicated peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF250RSS, ENCFF575ACJ, ENCFF884NZD 551394 ENCODE Processing Pipeline b97d13ab2966e5ec2cc49e077605b500 https://www.encodeproject.org/files/ENCFF864YRL/@@download/ENCFF864YRL.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF411NGB bam unfiltered alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHG, ENCFF018NEO, ENCFF675CSU 1477987587 ENCODE Processing Pipeline 6259920d06f275c9a5394d83e6905450 https://www.encodeproject.org/files/ENCFF411NGB/@@download/ENCFF411NGB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF912EEF bam unfiltered alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHA, ENCFF018NEO, ENCFF254PMM 1675142849 ENCODE Processing Pipeline dca5a32251ceaa43183046dee35852d0 https://www.encodeproject.org/files/ENCFF912EEF/@@download/ENCFF912EEF.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF938QJY bam alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHG, ENCFF018NEO, ENCFF675CSU 1041247398 ENCODE Processing Pipeline b866819f019c8024e1ae04ffa40b9f3f https://www.encodeproject.org/files/ENCFF938QJY/@@download/ENCFF938QJY.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF696DFD bam alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHA, ENCFF018NEO, ENCFF254PMM 1144559200 ENCODE Processing Pipeline 41b045c335ab938d814ea85cb0c99aa0 https://www.encodeproject.org/files/ENCFF696DFD/@@download/ENCFF696DFD.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF974EIN bed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF696DFD 1136339 ENCODE Processing Pipeline 4bf7518ab716671aceda162b79ef3dff https://www.encodeproject.org/files/ENCFF974EIN/@@download/ENCFF974EIN.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF316BPU bed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF938QJY 861231 ENCODE Processing Pipeline c2408d3961770518fc764695ddf5ed7d https://www.encodeproject.org/files/ENCFF316BPU/@@download/ENCFF316BPU.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF743YCJ bed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF696DFD, ENCFF938QJY 669300 ENCODE Processing Pipeline bed4c56d6da538d91dbfa212e78a193d https://www.encodeproject.org/files/ENCFF743YCJ/@@download/ENCFF743YCJ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF518RFV bigBed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF974EIN 2382717 ENCODE Processing Pipeline cad2a699be3d37d09aad623c0deb7821 https://www.encodeproject.org/files/ENCFF518RFV/@@download/ENCFF518RFV.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF511QPH bigBed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF316BPU 1884433 ENCODE Processing Pipeline 6700f8927f243dd3f5a1fb1d51131646 https://www.encodeproject.org/files/ENCFF511QPH/@@download/ENCFF511QPH.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF233JVZ bigBed narrowPeak peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF743YCJ 1772835 ENCODE Processing Pipeline 8e8c12579852cdbd9b80925c19cda216 https://www.encodeproject.org/files/ENCFF233JVZ/@@download/ENCFF233JVZ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF890AFJ bigWig signal p-value ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF696DFD 485744385 ENCODE Processing Pipeline f1410a1c0b89a4cffcd5fee489d7d2b5 https://www.encodeproject.org/files/ENCFF890AFJ/@@download/ENCFF890AFJ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF172ROF bigWig signal p-value ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF938QJY 431443319 ENCODE Processing Pipeline 65d097d05fdd8518767475c483772456 https://www.encodeproject.org/files/ENCFF172ROF/@@download/ENCFF172ROF.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF930GQD bigWig signal p-value ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF696DFD, ENCFF938QJY 664501054 ENCODE Processing Pipeline e495bfef4c35b252be21cd4468fcbd57 https://www.encodeproject.org/files/ENCFF930GQD/@@download/ENCFF930GQD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF540JMG bigWig fold change over control ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF438SAE, ENCFF451QHB, ENCFF696DFD 557085547 ENCODE Processing Pipeline 13463c04eb6580c938829525655573ab https://www.encodeproject.org/files/ENCFF540JMG/@@download/ENCFF540JMG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF445FJQ bigWig fold change over control ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF438SAE, ENCFF451QHB, ENCFF938QJY 528816572 ENCODE Processing Pipeline 5e041db97609b06c77d2083a8264118e https://www.encodeproject.org/files/ENCFF445FJQ/@@download/ENCFF445FJQ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF633GEF bigWig fold change over control ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF438SAE, ENCFF451QHB, ENCFF696DFD, ENCFF938QJY 814689017 ENCODE Processing Pipeline 8e6dde0d89dd08bd32e14654ffab7b30 https://www.encodeproject.org/files/ENCFF633GEF/@@download/ENCFF633GEF.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF109YUQ bed narrowPeak replicated peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF316BPU, ENCFF743YCJ, ENCFF974EIN 465478 ENCODE Processing Pipeline cd987bbc736977181462d654d3275232 https://www.encodeproject.org/files/ENCFF109YUQ/@@download/ENCFF109YUQ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF321SJE bigBed narrowPeak replicated peaks ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF109YUQ 1120306 ENCODE Processing Pipeline d567bf39c9d2505f8b73eadfc4f9171d https://www.encodeproject.org/files/ENCFF321SJE/@@download/ENCFF321SJE.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF001NGK bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NHQ 304937143 Michael Snyder, Stanford 87927857c063c3f752e9a2ea90a638df https://www.encodeproject.org/files/ENCFF001NGK/@@download/ENCFF001NGK.bam mm9 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NGL bigBed narrowPeak peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHX 230357 Michael Snyder, Stanford ab7f8bb219bbaab9632e656b1dbdb602 https://www.encodeproject.org/files/ENCFF001NGL/@@download/ENCFF001NGL.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NGM bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NHM 227558602 Michael Snyder, Stanford 07cde03ffd439e15cd565067660eba73 https://www.encodeproject.org/files/ENCFF001NGM/@@download/ENCFF001NGM.bam mm9 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NGN bigWig signal ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGK, ENCFF001NGM 238887123 Michael Snyder, Stanford 6bbfda2667038a8af8478322ac0224ff https://www.encodeproject.org/files/ENCFF001NGN/@@download/ENCFF001NGN.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NHM fastq reads ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 876700294 Michael Snyder, Stanford a93447b896a8ccf35f75010b2e382cf8 https://www.encodeproject.org/files/ENCFF001NHM/@@download/ENCFF001NHM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001NHQ fastq reads ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1137497571 Michael Snyder, Stanford 75a37eed97475482f310dcb11483a96d https://www.encodeproject.org/files/ENCFF001NHQ/@@download/ENCFF001NHQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001YHX bed narrowPeak peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NGK, ENCFF001NGM 69771 Michael Snyder, Stanford 131691f25548935225f203364af59ac2 https://www.encodeproject.org/files/ENCFF001YHX/@@download/ENCFF001YHX.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF440AZX bam unfiltered alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NHM, ENCFF018NEO 996523832 ENCODE Processing Pipeline 48599d514982e5a994b7cda231aa486f https://www.encodeproject.org/files/ENCFF440AZX/@@download/ENCFF440AZX.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF226AEO bam unfiltered alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NHQ, ENCFF018NEO 1284584654 ENCODE Processing Pipeline becb37e7b21ecc625bfb6e1e10029326 https://www.encodeproject.org/files/ENCFF226AEO/@@download/ENCFF226AEO.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF313WTS bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NHM, ENCFF018NEO 545405032 ENCODE Processing Pipeline 7028bc3ea4ddbb1877e69e54743170be https://www.encodeproject.org/files/ENCFF313WTS/@@download/ENCFF313WTS.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF328JKM bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NHQ, ENCFF018NEO 650937340 ENCODE Processing Pipeline 87c542ece54f9c525e8d3ef88564f6c4 https://www.encodeproject.org/files/ENCFF328JKM/@@download/ENCFF328JKM.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF507NQA bigWig signal p-value ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF328JKM, ENCFF339ZWC 239010458 ENCODE Processing Pipeline b86088c4dbffdbe68742231c2e4b045c https://www.encodeproject.org/files/ENCFF507NQA/@@download/ENCFF507NQA.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF750OIA bigWig signal p-value ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF313WTS, ENCFF328JKM, ENCFF339ZWC 233514532 ENCODE Processing Pipeline 37536152c2e1b7daea65d6fa531f1160 https://www.encodeproject.org/files/ENCFF750OIA/@@download/ENCFF750OIA.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF643MFI bigWig signal p-value ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF313WTS, ENCFF339ZWC 218893712 ENCODE Processing Pipeline b1108b23028efd3cf96033ceb5203289 https://www.encodeproject.org/files/ENCFF643MFI/@@download/ENCFF643MFI.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF381BWQ bigWig fold change over control ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF328JKM, ENCFF339ZWC 237956023 ENCODE Processing Pipeline ef95150abb2e7a010c1144644bf78a5b https://www.encodeproject.org/files/ENCFF381BWQ/@@download/ENCFF381BWQ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF753FNM bigWig fold change over control ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF313WTS, ENCFF339ZWC 198628488 ENCODE Processing Pipeline 40a5fe5233accb85451828f4300dd4a4 https://www.encodeproject.org/files/ENCFF753FNM/@@download/ENCFF753FNM.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF162FEM bigWig fold change over control ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF313WTS, ENCFF328JKM, ENCFF339ZWC 380205351 ENCODE Processing Pipeline 4c415958bd520f7dc3b9fc30e61461bc https://www.encodeproject.org/files/ENCFF162FEM/@@download/ENCFF162FEM.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF099HHW bed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF328JKM, ENCFF339ZWC 101505 ENCODE Processing Pipeline eaec7817c60b6464615b4ae0dea163ce https://www.encodeproject.org/files/ENCFF099HHW/@@download/ENCFF099HHW.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF346XAW bigBed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF099HHW 298671 ENCODE Processing Pipeline eb133265ba2fa693417fcc3e6c9727fd https://www.encodeproject.org/files/ENCFF346XAW/@@download/ENCFF346XAW.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF632ZQE bed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF313WTS, ENCFF339ZWC 4491592 ENCODE Processing Pipeline 4a5bcd6fd00c977911dfc2ff8fcc9d28 https://www.encodeproject.org/files/ENCFF632ZQE/@@download/ENCFF632ZQE.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF211VZG bed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF313WTS, ENCFF328JKM, ENCFF339ZWC 4878071 ENCODE Processing Pipeline dc5979a804655ca7769ef48ad8314aec https://www.encodeproject.org/files/ENCFF211VZG/@@download/ENCFF211VZG.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF029WYQ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF632ZQE 10093053 ENCODE Processing Pipeline fac77aebb445634a7d89ce65795163b8 https://www.encodeproject.org/files/ENCFF029WYQ/@@download/ENCFF029WYQ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF486IVR bed narrowPeak optimal idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF099HHW, ENCFF211VZG, ENCFF547MET, ENCFF632ZQE 120469 ENCODE Processing Pipeline 8686434c9474ab0865f3270ca2e2c2b5 https://www.encodeproject.org/files/ENCFF486IVR/@@download/ENCFF486IVR.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF420NNT bigBed narrowPeak peaks and background as input for IDR ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF211VZG 10637981 ENCODE Processing Pipeline c450c55cf444f03b70b6b821c38835c1 https://www.encodeproject.org/files/ENCFF420NNT/@@download/ENCFF420NNT.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF889SKV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF768LHT 84709 ENCODE Processing Pipeline c33019b6b16bbb756ac4c347852f28fe https://www.encodeproject.org/files/ENCFF889SKV/@@download/ENCFF889SKV.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF768LHT bed narrowPeak conservative idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF099HHW, ENCFF211VZG, ENCFF547MET, ENCFF632ZQE 18365 ENCODE Processing Pipeline cd42623923c039238be7b6d1de2bea7c https://www.encodeproject.org/files/ENCFF768LHT/@@download/ENCFF768LHT.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF828TJS bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF486IVR 265860 ENCODE Processing Pipeline ee39fc8eb621872e1bd0a95cdf3d195a https://www.encodeproject.org/files/ENCFF828TJS/@@download/ENCFF828TJS.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF001JWP bam alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001JXE 1525548793 Bing Ren, UCSD ac4b88c26ea8c18f07c9486166d23ac6 https://www.encodeproject.org/files/ENCFF001JWP/@@download/ENCFF001JWP.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JWQ bam alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001JXC 724541238 Bing Ren, UCSD 877578693cb9104155243d8aba0aad35 https://www.encodeproject.org/files/ENCFF001JWQ/@@download/ENCFF001JWQ.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JWR bigBed broadPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XVS 60251 Bing Ren, UCSD 13510edf71ecbeb83756db7c4716b19f https://www.encodeproject.org/files/ENCFF001JWR/@@download/ENCFF001JWR.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JWU bigWig signal ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 74867797 Bing Ren, UCSD cb71802362051818eafbca298d5ae02f https://www.encodeproject.org/files/ENCFF001JWU/@@download/ENCFF001JWU.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths missing derived_from, NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JXC fastq reads ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 741172217 Bing Ren, UCSD 01294549b613072d50e089b972920461 https://www.encodeproject.org/files/ENCFF001JXC/@@download/ENCFF001JXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JXL/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001JXE fastq reads ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1611139085 Bing Ren, UCSD 11d566c4c4917184387f1f46ad107078 https://www.encodeproject.org/files/ENCFF001JXE/@@download/ENCFF001JXE.fastq.gz Illumina HiSeq 2000 /files/ENCFF717EAN/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XVS bed broadPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 20302 Bing Ren, UCSD cb96026c8af7654b3337ab8f95738cba https://www.encodeproject.org/files/ENCFF001XVS/@@download/ENCFF001XVS.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths missing derived_from, NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF731WNW bam alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXC, ENCFF018NEO 345004857 ENCODE Processing Pipeline 5528b4a9ed22460114a6d3e3673ccdca https://www.encodeproject.org/files/ENCFF731WNW/@@download/ENCFF731WNW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF287ALK bam unfiltered alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXC, ENCFF018NEO 802114013 ENCODE Processing Pipeline a69264a5785572178a90f8ce6e9af8a5 https://www.encodeproject.org/files/ENCFF287ALK/@@download/ENCFF287ALK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF324FXV bigWig signal p-value ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF498QAY, ENCFF731WNW 169398463 ENCODE Processing Pipeline 4ddc676232d30fd202ca448f679d95e2 https://www.encodeproject.org/files/ENCFF324FXV/@@download/ENCFF324FXV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF203AAL bed narrowPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF498QAY, ENCFF731WNW 66598 ENCODE Processing Pipeline 0f31f18892d502528376900c38bce545 https://www.encodeproject.org/files/ENCFF203AAL/@@download/ENCFF203AAL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF304GML bigBed narrowPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF203AAL 163439 ENCODE Processing Pipeline a4b8fede84c997e2179a3ab4c857b41c https://www.encodeproject.org/files/ENCFF304GML/@@download/ENCFF304GML.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF115ACB bigWig fold change over control ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF498QAY, ENCFF731WNW 150142239 ENCODE Processing Pipeline a7beee1a9a48979b77e02908053746c4 https://www.encodeproject.org/files/ENCFF115ACB/@@download/ENCFF115ACB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF492TSI bam unfiltered alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JXE, ENCFF018NEO 1461241649 ENCODE Processing Pipeline 7c504aa090ed4457d41c96effc486150 https://www.encodeproject.org/files/ENCFF492TSI/@@download/ENCFF492TSI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF265FFL bam alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JXE, ENCFF018NEO 388310778 ENCODE Processing Pipeline 992bc9aa61a5927b64a451ee35f66604 https://www.encodeproject.org/files/ENCFF265FFL/@@download/ENCFF265FFL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF301QPQ bigBed narrowPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF602ZNT 1962627 ENCODE Processing Pipeline 3e2e9ff0a0ad6762e77cef40881aa6cc https://www.encodeproject.org/files/ENCFF301QPQ/@@download/ENCFF301QPQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF802IGU bigWig signal p-value ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF265FFL, ENCFF498QAY, ENCFF595QRX 230762098 ENCODE Processing Pipeline 82f6393e80c68e4ac3119ed522edf734 https://www.encodeproject.org/files/ENCFF802IGU/@@download/ENCFF802IGU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF895KHS bed narrowPeak replicated peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF203AAL, ENCFF538CJZ, ENCFF602ZNT 55153 ENCODE Processing Pipeline c055ff0849cd54bac93c27c1e470147d https://www.encodeproject.org/files/ENCFF895KHS/@@download/ENCFF895KHS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF897ZUB bigBed narrowPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF538CJZ 517436 ENCODE Processing Pipeline 5b640f33e16ff08f35317cbe66debfec https://www.encodeproject.org/files/ENCFF897ZUB/@@download/ENCFF897ZUB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF538CJZ bed narrowPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF265FFL, ENCFF498QAY, ENCFF595QRX, ENCFF731WNW 269915 ENCODE Processing Pipeline cc0d156f44cbbf773b77d812d84bacaa https://www.encodeproject.org/files/ENCFF538CJZ/@@download/ENCFF538CJZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF655NSX bigWig fold change over control ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF265FFL, ENCFF498QAY, ENCFF595QRX, ENCFF731WNW 332508869 ENCODE Processing Pipeline 4984037985ee76ea6a57f7d438ae2c65 https://www.encodeproject.org/files/ENCFF655NSX/@@download/ENCFF655NSX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF602ZNT bed narrowPeak peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF265FFL, ENCFF498QAY, ENCFF595QRX 1035780 ENCODE Processing Pipeline 7d3e680e7dcdec971dd59004afc28a3f https://www.encodeproject.org/files/ENCFF602ZNT/@@download/ENCFF602ZNT.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF232TAV bigWig signal p-value ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF265FFL, ENCFF498QAY, ENCFF595QRX, ENCFF731WNW 331665291 ENCODE Processing Pipeline c5d175efdcc22adb72dc4e5c7d41c47a https://www.encodeproject.org/files/ENCFF232TAV/@@download/ENCFF232TAV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF126LCQ bigWig fold change over control ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF265FFL, ENCFF498QAY, ENCFF595QRX 187188166 ENCODE Processing Pipeline 3030c90a015f7e9f8856c1185720f4cb https://www.encodeproject.org/files/ENCFF126LCQ/@@download/ENCFF126LCQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF232WHJ bigBed narrowPeak replicated peaks ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF895KHS 166635 ENCODE Processing Pipeline 95cf0f04a59e7d3b22d5e64bbadfcbc9 https://www.encodeproject.org/files/ENCFF232WHJ/@@download/ENCFF232WHJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF002DRI fastq reads ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 692226771 Bing Ren, UCSD 27cd1fa2e7249994d81d1bbfe0e341a3 SRA:SRR3651872 https://www.encodeproject.org/files/ENCFF002DRI/@@download/ENCFF002DRI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQG/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRJ fastq reads ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 36 single-ended 646787015 Bing Ren, UCSD 3f8a6512efe310c93c4ff87e13e24c05 SRA:SRR3651873 https://www.encodeproject.org/files/ENCFF002DRJ/@@download/ENCFF002DRJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQG/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRL fastq reads ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 3 36 single-ended 815002902 Bing Ren, UCSD 9dfbd482bc3620af64e67f48d7c07e41 SRA:SRR3651874 https://www.encodeproject.org/files/ENCFF002DRL/@@download/ENCFF002DRL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQG/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRO fastq reads ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 803469824 Bing Ren, UCSD 5c203d0c979417883401bdbdfd9181e2 SRA:SRR3651875 https://www.encodeproject.org/files/ENCFF002DRO/@@download/ENCFF002DRO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQF/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRP fastq reads ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 3 36 single-ended 780231062 Bing Ren, UCSD 208693f8a217ee5b95a2f2aeaaf36708 SRA:SRR3651876 https://www.encodeproject.org/files/ENCFF002DRP/@@download/ENCFF002DRP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQF/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRS fastq reads ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 36 single-ended 742771506 Bing Ren, UCSD 41945a7ad5b2081aa835295f2f1ff65a SRA:SRR3651877 https://www.encodeproject.org/files/ENCFF002DRS/@@download/ENCFF002DRS.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQF/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF899GTI bam alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002DRO, ENCFF002DRP, ENCFF002DRS, ENCFF806TVZ 1260791388 ENCODE Processing Pipeline 2d2ccb676dec0f13c803800b87140931 https://www.encodeproject.org/files/ENCFF899GTI/@@download/ENCFF899GTI.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF780KZB bam alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002DRI, ENCFF002DRJ, ENCFF002DRL, ENCFF806TVZ 1068546101 ENCODE Processing Pipeline 62feb2fc479a7ea98bb48b0b9393205d https://www.encodeproject.org/files/ENCFF780KZB/@@download/ENCFF780KZB.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF327DTU bigBed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF473UEN 909972 ENCODE Processing Pipeline a2914fcb9087cdcfbf7af15c780c8ded https://www.encodeproject.org/files/ENCFF327DTU/@@download/ENCFF327DTU.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF473UEN bed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF462HQE, ENCFF868CEP, ENCFF899GTI 465728 ENCODE Processing Pipeline a26172946648d00cde286eff29f53ae7 https://www.encodeproject.org/files/ENCFF473UEN/@@download/ENCFF473UEN.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF189LON bigBed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF033USR 922333 ENCODE Processing Pipeline 9264b317463d99e95053cf8944c376bb https://www.encodeproject.org/files/ENCFF189LON/@@download/ENCFF189LON.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF033USR bed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF462HQE, ENCFF780KZB 468473 ENCODE Processing Pipeline 3ffdd1ac4e946ac2d5d2f02afd92a4db https://www.encodeproject.org/files/ENCFF033USR/@@download/ENCFF033USR.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF668HAM bed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF462HQE, ENCFF780KZB, ENCFF868CEP, ENCFF899GTI 723839 ENCODE Processing Pipeline d78fcb0030257ec8e6cb760891028b1a https://www.encodeproject.org/files/ENCFF668HAM/@@download/ENCFF668HAM.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF009XOU bigWig signal p-value ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF462HQE, ENCFF780KZB 509533338 ENCODE Processing Pipeline 7bb2025b7061695ea7e743f85300a6bf https://www.encodeproject.org/files/ENCFF009XOU/@@download/ENCFF009XOU.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF880PLF bigBed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF668HAM 1622658 ENCODE Processing Pipeline 3ae9b3204627f6cc79b9925dbf701cad https://www.encodeproject.org/files/ENCFF880PLF/@@download/ENCFF880PLF.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF329SXT bigWig fold change over control ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF462HQE, ENCFF780KZB, ENCFF868CEP, ENCFF899GTI 896299735 ENCODE Processing Pipeline 020fe5fdc6b0b71b2c20c4be21f3c5b2 https://www.encodeproject.org/files/ENCFF329SXT/@@download/ENCFF329SXT.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF475FYE bigWig signal p-value ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF462HQE, ENCFF868CEP, ENCFF899GTI 555863798 ENCODE Processing Pipeline c11027640c7e1c24fd41bbd6fcb54d28 https://www.encodeproject.org/files/ENCFF475FYE/@@download/ENCFF475FYE.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF197VHA bigWig signal p-value ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF462HQE, ENCFF780KZB, ENCFF868CEP, ENCFF899GTI 890290464 ENCODE Processing Pipeline 2a6e77277ef5b348321bf062874b4462 https://www.encodeproject.org/files/ENCFF197VHA/@@download/ENCFF197VHA.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF661DOZ bigWig fold change over control ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF462HQE, ENCFF780KZB 457798270 ENCODE Processing Pipeline b0ac0ed91b8f433a321f639b7d281a95 https://www.encodeproject.org/files/ENCFF661DOZ/@@download/ENCFF661DOZ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF763CPW bigWig fold change over control ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF462HQE, ENCFF868CEP, ENCFF899GTI 612214776 ENCODE Processing Pipeline 5568976c4e18fa0ce717880c5eaa5dd3 https://www.encodeproject.org/files/ENCFF763CPW/@@download/ENCFF763CPW.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF621XDW bed narrowPeak replicated peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF033USR, ENCFF473UEN, ENCFF668HAM 259727 ENCODE Processing Pipeline c90268a1eed35dfc95b8267f56e2fd89 https://www.encodeproject.org/files/ENCFF621XDW/@@download/ENCFF621XDW.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF148QMJ bigBed narrowPeak replicated peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF621XDW 638553 ENCODE Processing Pipeline 31f8abe828f619a0c0bb94c85d1fc354 https://www.encodeproject.org/files/ENCFF148QMJ/@@download/ENCFF148QMJ.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF134OYZ bam unfiltered alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DRO, ENCFF002DRP, ENCFF002DRS, ENCFF018NEO 2928822004 ENCODE Processing Pipeline 18e7ddfeda256ff57659243b7c3a30a9 https://www.encodeproject.org/files/ENCFF134OYZ/@@download/ENCFF134OYZ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF490WNR bam unfiltered alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DRI, ENCFF002DRJ, ENCFF002DRL, ENCFF018NEO 2681875411 ENCODE Processing Pipeline 4fdd214f52118ff0070049b8e3eac5c6 https://www.encodeproject.org/files/ENCFF490WNR/@@download/ENCFF490WNR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF520QES bam alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DRI, ENCFF002DRJ, ENCFF002DRL, ENCFF018NEO 1067938390 ENCODE Processing Pipeline b507588ded7bf4fb1f04838242ea7a60 https://www.encodeproject.org/files/ENCFF520QES/@@download/ENCFF520QES.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF888BTM bam alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DRO, ENCFF002DRP, ENCFF002DRS, ENCFF018NEO 1260130260 ENCODE Processing Pipeline 9eb6b9862a6505480fb6ba7d38c0afd8 https://www.encodeproject.org/files/ENCFF888BTM/@@download/ENCFF888BTM.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF398VOC bed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF383CGK, ENCFF520QES, ENCFF598OHC 496157 ENCODE Processing Pipeline 65303fc342572f6803fea0041bec2a53 https://www.encodeproject.org/files/ENCFF398VOC/@@download/ENCFF398VOC.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF246BSS bed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF383CGK, ENCFF888BTM 195114 ENCODE Processing Pipeline a670813d50a0f2fe2ecdeeddd09b56da https://www.encodeproject.org/files/ENCFF246BSS/@@download/ENCFF246BSS.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF478BSS bed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF383CGK, ENCFF520QES, ENCFF598OHC, ENCFF888BTM 540484 ENCODE Processing Pipeline 3496f53417da31e298fb1c05c6328e9d https://www.encodeproject.org/files/ENCFF478BSS/@@download/ENCFF478BSS.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF512JIO bigBed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF246BSS 457254 ENCODE Processing Pipeline d2d259caa02cc3702060ec5d3f2d345b https://www.encodeproject.org/files/ENCFF512JIO/@@download/ENCFF512JIO.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF156GIP bigBed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF398VOC 965235 ENCODE Processing Pipeline 81a541672093220ef879938d14004cd5 https://www.encodeproject.org/files/ENCFF156GIP/@@download/ENCFF156GIP.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF840KFP bigBed narrowPeak peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF478BSS 1279284 ENCODE Processing Pipeline ce3a40dd4e7068c322f83b65c862bb34 https://www.encodeproject.org/files/ENCFF840KFP/@@download/ENCFF840KFP.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF565YKZ bigWig signal p-value ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF383CGK, ENCFF520QES, ENCFF598OHC 486639181 ENCODE Processing Pipeline d0f71088f4865db37eddc7e232540b20 https://www.encodeproject.org/files/ENCFF565YKZ/@@download/ENCFF565YKZ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF298NCK bigWig signal p-value ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF383CGK, ENCFF888BTM 452861583 ENCODE Processing Pipeline 9c61f51c9074fafb43396d4e4eaafaff https://www.encodeproject.org/files/ENCFF298NCK/@@download/ENCFF298NCK.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF188YCO bigWig signal p-value ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF383CGK, ENCFF520QES, ENCFF598OHC, ENCFF888BTM 915514456 ENCODE Processing Pipeline 72c4a12934686c20fe9d30752547b96b https://www.encodeproject.org/files/ENCFF188YCO/@@download/ENCFF188YCO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF659GNW bigWig fold change over control ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF383CGK, ENCFF520QES, ENCFF598OHC 607162277 ENCODE Processing Pipeline b37eb7ddc51d4e80ca3f723fef5ef211 https://www.encodeproject.org/files/ENCFF659GNW/@@download/ENCFF659GNW.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF467FIO bigWig fold change over control ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF383CGK, ENCFF888BTM 508827696 ENCODE Processing Pipeline ca08c3c6c777ef58afa7bd496ec0377c https://www.encodeproject.org/files/ENCFF467FIO/@@download/ENCFF467FIO.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF033IOU bigWig fold change over control ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF383CGK, ENCFF520QES, ENCFF598OHC, ENCFF888BTM 950934785 ENCODE Processing Pipeline 053166f718b5990c93c6a8a95d8c226e https://www.encodeproject.org/files/ENCFF033IOU/@@download/ENCFF033IOU.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF816HJK bed narrowPeak replicated peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF246BSS, ENCFF398VOC, ENCFF478BSS 245805 ENCODE Processing Pipeline b56cfeb1cb9bfe34fdccf64b6af6a760 https://www.encodeproject.org/files/ENCFF816HJK/@@download/ENCFF816HJK.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF582XGZ bigBed narrowPeak replicated peaks ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF816HJK 614313 ENCODE Processing Pipeline b2af679120ab51182423ce2e95387a59 https://www.encodeproject.org/files/ENCFF582XGZ/@@download/ENCFF582XGZ.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002AFO fastq reads ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1477410618 Bing Ren, UCSD a3a029e03983b29476dd156e8c8dceb8 SRA:SRR3652753 https://www.encodeproject.org/files/ENCFF002AFO/@@download/ENCFF002AFO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQU/ released mild to moderate bottlenecking, low read depth ENCFF002AFQ fastq reads ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1986606274 Bing Ren, UCSD c210b1b42ed9e4652a3b23fad9e72f8f SRA:SRR3652754 https://www.encodeproject.org/files/ENCFF002AFQ/@@download/ENCFF002AFQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQS/ released mild to moderate bottlenecking, low read depth ENCFF900HGA bam alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFO, ENCFF806TVZ 1087616081 ENCODE Processing Pipeline 74b89cfa05cfb3bc1491802904f2509c https://www.encodeproject.org/files/ENCFF900HGA/@@download/ENCFF900HGA.bam mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF189JSD bam alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFQ, ENCFF806TVZ 1448802398 ENCODE Processing Pipeline 9b23f6dc9e08afbd3e7413d793e44ee4 https://www.encodeproject.org/files/ENCFF189JSD/@@download/ENCFF189JSD.bam mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF320NYH bed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF189JSD, ENCFF977HMC 1593469 ENCODE Processing Pipeline d483e574d573eb9dd0f7c0183a69a86d https://www.encodeproject.org/files/ENCFF320NYH/@@download/ENCFF320NYH.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF949WTX bigBed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF320NYH 4429415 ENCODE Processing Pipeline 559eb56b99e32e029541009786eb234c https://www.encodeproject.org/files/ENCFF949WTX/@@download/ENCFF949WTX.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF689EPC bed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF900HGA 1510684 ENCODE Processing Pipeline 7c6db9289f92d9d70dc189eafff03ae8 https://www.encodeproject.org/files/ENCFF689EPC/@@download/ENCFF689EPC.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF639EBF bigBed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF689EPC 4200772 ENCODE Processing Pipeline ecaab8101fbeba8ad4ff1a8bd2a3c916 https://www.encodeproject.org/files/ENCFF639EBF/@@download/ENCFF639EBF.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF191SII bigBed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF921LAD 5026460 ENCODE Processing Pipeline 5d218ceec7d0a308816470bd8a39db4c https://www.encodeproject.org/files/ENCFF191SII/@@download/ENCFF191SII.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF921LAD bed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF189JSD, ENCFF720UVE, ENCFF900HGA, ENCFF977HMC 1864487 ENCODE Processing Pipeline d07a42a99b2ddb511127b58174739149 https://www.encodeproject.org/files/ENCFF921LAD/@@download/ENCFF921LAD.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF753FKX bigWig signal p-value ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF189JSD, ENCFF977HMC 464139318 ENCODE Processing Pipeline 2cabe31d5b1f72eab957c1086756f70a https://www.encodeproject.org/files/ENCFF753FKX/@@download/ENCFF753FKX.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF519WQD bigWig signal p-value ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF189JSD, ENCFF720UVE, ENCFF900HGA, ENCFF977HMC 880407052 ENCODE Processing Pipeline edf17014f1ea071d66185aa2e28851e5 https://www.encodeproject.org/files/ENCFF519WQD/@@download/ENCFF519WQD.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF898EVK bigWig signal p-value ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF900HGA 400510421 ENCODE Processing Pipeline 3bccdaddc2c4bd271b09cee9a6b78da0 https://www.encodeproject.org/files/ENCFF898EVK/@@download/ENCFF898EVK.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF451HFI bigWig fold change over control ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF189JSD, ENCFF977HMC 511593448 ENCODE Processing Pipeline 160323dc1e2dc23c02fc4466a7c897c1 https://www.encodeproject.org/files/ENCFF451HFI/@@download/ENCFF451HFI.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF087LGU bigWig fold change over control ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF720UVE, ENCFF900HGA 399073689 ENCODE Processing Pipeline 0c631754adf44b4212aaf025c4057c61 https://www.encodeproject.org/files/ENCFF087LGU/@@download/ENCFF087LGU.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF741IXX bigWig fold change over control ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF189JSD, ENCFF720UVE, ENCFF900HGA, ENCFF977HMC 893430107 ENCODE Processing Pipeline f008489e77bff837dcd34d219c040c82 https://www.encodeproject.org/files/ENCFF741IXX/@@download/ENCFF741IXX.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF540GLK bed narrowPeak replicated peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF320NYH, ENCFF689EPC, ENCFF921LAD 1625684 ENCODE Processing Pipeline 9f8e3d029a25588413fbd89b022d4426 https://www.encodeproject.org/files/ENCFF540GLK/@@download/ENCFF540GLK.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF360VIR bigBed narrowPeak replicated peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF540GLK 3337822 ENCODE Processing Pipeline 68df5077aeccd199b207c337854cad9f https://www.encodeproject.org/files/ENCFF360VIR/@@download/ENCFF360VIR.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF637BMA bam unfiltered alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFO, ENCFF018NEO 1543023053 ENCODE Processing Pipeline ad53480d423458a467d5ebbe86f2bc92 https://www.encodeproject.org/files/ENCFF637BMA/@@download/ENCFF637BMA.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF388ZSS bam unfiltered alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFQ, ENCFF018NEO 2064318556 ENCODE Processing Pipeline 368a3ade23b430bb1725cdf9946b9ed3 https://www.encodeproject.org/files/ENCFF388ZSS/@@download/ENCFF388ZSS.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF659KMV bam alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFO, ENCFF018NEO 1087374061 ENCODE Processing Pipeline 4da7bc2e7c5949451d45c46670b19554 https://www.encodeproject.org/files/ENCFF659KMV/@@download/ENCFF659KMV.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF441FKM bam alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFQ, ENCFF018NEO 1448510109 ENCODE Processing Pipeline 64a1b8375e63a9343e14842a46c70e2b https://www.encodeproject.org/files/ENCFF441FKM/@@download/ENCFF441FKM.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF222VNH bed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF160FCQ, ENCFF441FKM, ENCFF504TMU, ENCFF659KMV 1865037 ENCODE Processing Pipeline 3097befcab7fa4668a9d68da87af51df https://www.encodeproject.org/files/ENCFF222VNH/@@download/ENCFF222VNH.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF089RHG bigBed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF053SRV 4429232 ENCODE Processing Pipeline dbc903fda40319ee5c6ead68aff13d95 https://www.encodeproject.org/files/ENCFF089RHG/@@download/ENCFF089RHG.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF053SRV bed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF160FCQ, ENCFF441FKM 1592296 ENCODE Processing Pipeline 8b9f0582b91d46e4d6ccb85e2049c5e3 https://www.encodeproject.org/files/ENCFF053SRV/@@download/ENCFF053SRV.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF499JLS bed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF504TMU, ENCFF659KMV 1520300 ENCODE Processing Pipeline 447c452b23f76cc0d1b4a1db19238590 https://www.encodeproject.org/files/ENCFF499JLS/@@download/ENCFF499JLS.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF076OBW bigBed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF499JLS 4228115 ENCODE Processing Pipeline 501f87c9f7a51dffc1f2be061ca893fd https://www.encodeproject.org/files/ENCFF076OBW/@@download/ENCFF076OBW.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF551VGA bigBed narrowPeak peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF222VNH 5033590 ENCODE Processing Pipeline 5b8153d6d4d4ed7997e1230085b59ef1 https://www.encodeproject.org/files/ENCFF551VGA/@@download/ENCFF551VGA.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF713OQE bigWig signal p-value ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF160FCQ, ENCFF441FKM 516392184 ENCODE Processing Pipeline 6dfa6ae51b10c2c5037c8d5ac754def3 https://www.encodeproject.org/files/ENCFF713OQE/@@download/ENCFF713OQE.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF466RKF bigWig signal p-value ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF504TMU, ENCFF659KMV 425437572 ENCODE Processing Pipeline ec3a923da83fd15b8f5146ae16130b57 https://www.encodeproject.org/files/ENCFF466RKF/@@download/ENCFF466RKF.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF130VIH bigWig signal p-value ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF160FCQ, ENCFF441FKM, ENCFF504TMU, ENCFF659KMV 714059992 ENCODE Processing Pipeline 608dcff9ceb4f3f5674ac65c776c2481 https://www.encodeproject.org/files/ENCFF130VIH/@@download/ENCFF130VIH.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF227XLO bigWig fold change over control ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF160FCQ, ENCFF441FKM 510148141 ENCODE Processing Pipeline 7ba1e7c345f6a8c3c8369e384647105c https://www.encodeproject.org/files/ENCFF227XLO/@@download/ENCFF227XLO.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF413FQT bigWig fold change over control ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF504TMU, ENCFF659KMV 403064349 ENCODE Processing Pipeline d2afb1c57a3db221b9f614abd1195e2d https://www.encodeproject.org/files/ENCFF413FQT/@@download/ENCFF413FQT.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF804EYG bigWig fold change over control ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF160FCQ, ENCFF441FKM, ENCFF504TMU, ENCFF659KMV 872887316 ENCODE Processing Pipeline 6a4ea7b3bf19bbefe2886a71686bde26 https://www.encodeproject.org/files/ENCFF804EYG/@@download/ENCFF804EYG.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF463XJT bed narrowPeak replicated peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF053SRV, ENCFF222VNH, ENCFF499JLS 1632144 ENCODE Processing Pipeline eb16fc09c82ae768fab8c38e3850e45d https://www.encodeproject.org/files/ENCFF463XJT/@@download/ENCFF463XJT.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF639DPG bigBed narrowPeak replicated peaks ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF463XJT 3361379 ENCODE Processing Pipeline b4fed22d25899102d8f8dd1be22e0c99 https://www.encodeproject.org/files/ENCFF639DPG/@@download/ENCFF639DPG.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF485NUU fastq reads ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 50 single-ended 2011063538 Bing Ren, UCSD 7ac12edc085e9d599007c224a67cccbf SRA:SRR3653147 https://www.encodeproject.org/files/ENCFF485NUU/@@download/ENCFF485NUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF137FPP fastq reads ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1313851024 Bing Ren, UCSD 8456a82318a71af4ec99e4f88635c817 SRA:SRR3653148 https://www.encodeproject.org/files/ENCFF137FPP/@@download/ENCFF137FPP.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF454BWA bam alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF137FPP, ENCFF806TVZ 836140332 ENCODE Processing Pipeline 91ebfc246b0463dce138ece96d92eca0 https://www.encodeproject.org/files/ENCFF454BWA/@@download/ENCFF454BWA.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF967KYF bam alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF485NUU, ENCFF806TVZ 1470724641 ENCODE Processing Pipeline 7771372db88bffd902532ce266ff269b https://www.encodeproject.org/files/ENCFF967KYF/@@download/ENCFF967KYF.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF915IAT bed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF967KYF 1841709 ENCODE Processing Pipeline 66b867b7f1f40100f9097412a3118f26 https://www.encodeproject.org/files/ENCFF915IAT/@@download/ENCFF915IAT.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF731SNT bigBed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF915IAT 3527594 ENCODE Processing Pipeline b5d0db7da5e5eedb2ea49e219391526c https://www.encodeproject.org/files/ENCFF731SNT/@@download/ENCFF731SNT.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF099QIQ bigWig signal p-value ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF967KYF 474978957 ENCODE Processing Pipeline e78c927469d97ae1d17d07efb7202db2 https://www.encodeproject.org/files/ENCFF099QIQ/@@download/ENCFF099QIQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF208ATD bed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF454BWA, ENCFF562EMV, ENCFF623BMA 2399896 ENCODE Processing Pipeline 25565e65c8d894bda92c47f0878dee44 https://www.encodeproject.org/files/ENCFF208ATD/@@download/ENCFF208ATD.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF647VFJ bed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF454BWA, ENCFF562EMV, ENCFF623BMA, ENCFF967KYF 1826196 ENCODE Processing Pipeline a1b80653683ee0c67130b6127466a4a8 https://www.encodeproject.org/files/ENCFF647VFJ/@@download/ENCFF647VFJ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF621QUR bigBed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF208ATD 5846588 ENCODE Processing Pipeline 951da4f139ea92c4041cbc11a3a6359e https://www.encodeproject.org/files/ENCFF621QUR/@@download/ENCFF621QUR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF044GWN bigBed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF647VFJ 4376583 ENCODE Processing Pipeline 008f688b9fc15dbed09588b8280adb1e https://www.encodeproject.org/files/ENCFF044GWN/@@download/ENCFF044GWN.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF315UBW bigWig signal p-value ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF454BWA, ENCFF562EMV, ENCFF623BMA 374556920 ENCODE Processing Pipeline 2d8efce803d767b7c547d10e4b0ba814 https://www.encodeproject.org/files/ENCFF315UBW/@@download/ENCFF315UBW.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF608PTR bigWig signal p-value ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF454BWA, ENCFF562EMV, ENCFF623BMA, ENCFF967KYF 472647034 ENCODE Processing Pipeline 9a89102fa09718a522a0743839dc1c38 https://www.encodeproject.org/files/ENCFF608PTR/@@download/ENCFF608PTR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF561FEJ bigWig fold change over control ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF967KYF 470143376 ENCODE Processing Pipeline 35077d9bc4a39eac439e64f23067f973 https://www.encodeproject.org/files/ENCFF561FEJ/@@download/ENCFF561FEJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF621HVP bigWig fold change over control ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF454BWA, ENCFF562EMV, ENCFF623BMA 397678291 ENCODE Processing Pipeline 006779405b9aecf9d67fa368fbeedb2c https://www.encodeproject.org/files/ENCFF621HVP/@@download/ENCFF621HVP.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF055BYA bed narrowPeak replicated peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF208ATD, ENCFF647VFJ, ENCFF915IAT 1857229 ENCODE Processing Pipeline b5a6aee27ba05b75ea4d7f02a4a660b3 https://www.encodeproject.org/files/ENCFF055BYA/@@download/ENCFF055BYA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF181AYD bigBed narrowPeak replicated peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF055BYA 3763815 ENCODE Processing Pipeline b8ba7b8c59bef52f38563a0215c3f59c https://www.encodeproject.org/files/ENCFF181AYD/@@download/ENCFF181AYD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF850YWR bigWig fold change over control ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF454BWA, ENCFF562EMV, ENCFF623BMA, ENCFF967KYF 705334602 ENCODE Processing Pipeline 2024adc77a2783f721352038eb64fadb https://www.encodeproject.org/files/ENCFF850YWR/@@download/ENCFF850YWR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF108HUL bam unfiltered alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF137FPP 1659003794 ENCODE Processing Pipeline 6d2ea7b15f91f2da1faad422bcd98c6b https://www.encodeproject.org/files/ENCFF108HUL/@@download/ENCFF108HUL.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF883VZS bam alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF137FPP 835866745 ENCODE Processing Pipeline bae014600e494fa87a4be2a32363fbc5 https://www.encodeproject.org/files/ENCFF883VZS/@@download/ENCFF883VZS.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF856CJR bed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF883VZS, ENCFF903NWQ 985784 ENCODE Processing Pipeline 420357ebf5301f721e032e561232c6bd https://www.encodeproject.org/files/ENCFF856CJR/@@download/ENCFF856CJR.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF776IEH bigBed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF856CJR 2069865 ENCODE Processing Pipeline 95fe9158824e2e365598b2c6dd4020af https://www.encodeproject.org/files/ENCFF776IEH/@@download/ENCFF776IEH.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF618NLB bigWig signal p-value ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF883VZS, ENCFF903NWQ 259540086 ENCODE Processing Pipeline 81b299fb992e28b2ac932bd5b1919d84 https://www.encodeproject.org/files/ENCFF618NLB/@@download/ENCFF618NLB.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF577ZBT bigWig fold change over control ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF883VZS, ENCFF903NWQ 332692625 ENCODE Processing Pipeline 45aefbf9846693d9acb7e6f12108a405 https://www.encodeproject.org/files/ENCFF577ZBT/@@download/ENCFF577ZBT.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF195YEV bam unfiltered alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF485NUU 1993895774 ENCODE Processing Pipeline 4f1b944a46ac6decb15451292bee546d https://www.encodeproject.org/files/ENCFF195YEV/@@download/ENCFF195YEV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF225PLO bam alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF485NUU 1078203448 ENCODE Processing Pipeline c71bc0688597cbc0e6da3d9c57f8dfcb https://www.encodeproject.org/files/ENCFF225PLO/@@download/ENCFF225PLO.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF458ONS bed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF225PLO, ENCFF903NWQ, ENCFF995XOU 2427681 ENCODE Processing Pipeline b205337832f1212b471d36041934bc6a https://www.encodeproject.org/files/ENCFF458ONS/@@download/ENCFF458ONS.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF934KDR bed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF225PLO, ENCFF883VZS, ENCFF903NWQ, ENCFF995XOU 2031357 ENCODE Processing Pipeline 9362559a4277e7e680a98028db2edca8 https://www.encodeproject.org/files/ENCFF934KDR/@@download/ENCFF934KDR.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF311NYH bigBed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF458ONS 5910715 ENCODE Processing Pipeline 97b06ba0bdece1d5da8264f19cc23aef https://www.encodeproject.org/files/ENCFF311NYH/@@download/ENCFF311NYH.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF462IYV bigWig fold change over control ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF225PLO, ENCFF883VZS, ENCFF903NWQ, ENCFF995XOU 683971449 ENCODE Processing Pipeline dc89e2bc56817caa26a07eb8d9de0263 https://www.encodeproject.org/files/ENCFF462IYV/@@download/ENCFF462IYV.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF710QZP bed narrowPeak replicated peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF458ONS, ENCFF856CJR, ENCFF934KDR 1714934 ENCODE Processing Pipeline e5fb42b8743f64857080072c5237ff55 https://www.encodeproject.org/files/ENCFF710QZP/@@download/ENCFF710QZP.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF125UNA bigBed narrowPeak replicated peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF710QZP 3494727 ENCODE Processing Pipeline c4c2aca31308e58d8d4a1f3030bd14db https://www.encodeproject.org/files/ENCFF125UNA/@@download/ENCFF125UNA.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF840NXX bigWig signal p-value ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF225PLO, ENCFF903NWQ, ENCFF995XOU 404772244 ENCODE Processing Pipeline ac99bc63d11df1726ddee62cdc334fc9 https://www.encodeproject.org/files/ENCFF840NXX/@@download/ENCFF840NXX.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF034YRS bigBed narrowPeak peaks ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF934KDR 4835881 ENCODE Processing Pipeline 83d0fe0e50d9fd54474640b0c7e327b8 https://www.encodeproject.org/files/ENCFF034YRS/@@download/ENCFF034YRS.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF669BZB bigWig signal p-value ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF225PLO, ENCFF883VZS, ENCFF903NWQ, ENCFF995XOU 468909461 ENCODE Processing Pipeline 627729499d9e86f4fedaa2a7f38157dc https://www.encodeproject.org/files/ENCFF669BZB/@@download/ENCFF669BZB.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF863RFQ bigWig fold change over control ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF225PLO, ENCFF903NWQ, ENCFF995XOU 445061430 ENCODE Processing Pipeline 488b63c6081c276dd083c566792c6528 https://www.encodeproject.org/files/ENCFF863RFQ/@@download/ENCFF863RFQ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF002AKA fastq reads ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1104632293 Bing Ren, UCSD b4ba8cf03d1101178bfb9dde25ed76f4 SRA:SRR3652556 https://www.encodeproject.org/files/ENCFF002AKA/@@download/ENCFF002AKA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQX/ released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF002AKF fastq reads ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1663654188 Bing Ren, UCSD 6e8786bfb863a8097b9bc7fc95e7354a SRA:SRR3652555 https://www.encodeproject.org/files/ENCFF002AKF/@@download/ENCFF002AKF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQT/ released low read length, antibody characterized with exemption, inconsistent control read length, mixed read lengths insufficient read depth ENCFF419UMI bam alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKF, ENCFF806TVZ 1492287036 ENCODE Processing Pipeline 46896935f51215cbf3511e4bd022f20e https://www.encodeproject.org/files/ENCFF419UMI/@@download/ENCFF419UMI.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF286HRJ bam alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKA, ENCFF806TVZ 1141150074 ENCODE Processing Pipeline bc03bb7f57806078c60d00347ffa41ab https://www.encodeproject.org/files/ENCFF286HRJ/@@download/ENCFF286HRJ.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF690YIB bed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF286HRJ, ENCFF431MET 1316709 ENCODE Processing Pipeline d51897923ae3c7321a45e3896f94b16e https://www.encodeproject.org/files/ENCFF690YIB/@@download/ENCFF690YIB.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF453TUW bigBed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF196MYU 3367401 ENCODE Processing Pipeline 34c66553b90fc2e9cabb9bc6c0c9ba72 https://www.encodeproject.org/files/ENCFF453TUW/@@download/ENCFF453TUW.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF768HUU bigBed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF690YIB 3129780 ENCODE Processing Pipeline 8a71548898df89382b297518b220d496 https://www.encodeproject.org/files/ENCFF768HUU/@@download/ENCFF768HUU.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF563GNI bigWig signal p-value ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF419UMI, ENCFF431MET 715878366 ENCODE Processing Pipeline 7eb0c269e8d550b20ff86fca9295661f https://www.encodeproject.org/files/ENCFF563GNI/@@download/ENCFF563GNI.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF294SHN bigWig signal p-value ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF286HRJ, ENCFF419UMI, ENCFF431MET 697719563 ENCODE Processing Pipeline 583b8a888edca3cdd16bf445f6900107 https://www.encodeproject.org/files/ENCFF294SHN/@@download/ENCFF294SHN.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF409FVS bigWig signal p-value ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF286HRJ, ENCFF431MET 577193562 ENCODE Processing Pipeline 3e0b597d76926e3aaf7dbe0ce217bbc9 https://www.encodeproject.org/files/ENCFF409FVS/@@download/ENCFF409FVS.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF400HVR bed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF286HRJ, ENCFF419UMI, ENCFF431MET 2109070 ENCODE Processing Pipeline 45a63cce6ed5598783e72dca9a03ad64 https://www.encodeproject.org/files/ENCFF400HVR/@@download/ENCFF400HVR.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF887YSH bigWig fold change over control ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF419UMI, ENCFF431MET 704802145 ENCODE Processing Pipeline 6d47c0730e3c82ee2a14e97e06908485 https://www.encodeproject.org/files/ENCFF887YSH/@@download/ENCFF887YSH.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF196MYU bed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF419UMI, ENCFF431MET 1403686 ENCODE Processing Pipeline ec4e2b320851fcb59c6efb3b412c2f20 https://www.encodeproject.org/files/ENCFF196MYU/@@download/ENCFF196MYU.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF985BIN bigBed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF400HVR 4603169 ENCODE Processing Pipeline 496a7e43f84140d7819476c825533784 https://www.encodeproject.org/files/ENCFF985BIN/@@download/ENCFF985BIN.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF242CIU bigWig fold change over control ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF286HRJ, ENCFF431MET 550316274 ENCODE Processing Pipeline 2948918177767c57c42c282f5e880d4e https://www.encodeproject.org/files/ENCFF242CIU/@@download/ENCFF242CIU.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF440HEM bigWig fold change over control ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF286HRJ, ENCFF419UMI, ENCFF431MET 916915544 ENCODE Processing Pipeline 06f3e575ad0b6ea65292468ccaae70a1 https://www.encodeproject.org/files/ENCFF440HEM/@@download/ENCFF440HEM.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF759QGL bed narrowPeak replicated peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF196MYU, ENCFF400HVR, ENCFF690YIB 890541 ENCODE Processing Pipeline 82cfa9eae4eea4c01aabd74544608540 https://www.encodeproject.org/files/ENCFF759QGL/@@download/ENCFF759QGL.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF328AXE bigBed narrowPeak replicated peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF759QGL 1930458 ENCODE Processing Pipeline f55d3b6b790ff799b6e2ca9576e822ed https://www.encodeproject.org/files/ENCFF328AXE/@@download/ENCFF328AXE.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF364QCB bam unfiltered alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKA, ENCFF018NEO 1157499787 ENCODE Processing Pipeline 107858c37fe93f894c0b309051d6eef7 https://www.encodeproject.org/files/ENCFF364QCB/@@download/ENCFF364QCB.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF249UWH bam unfiltered alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKF, ENCFF018NEO 2047954212 ENCODE Processing Pipeline c1f3a24e2c78029d8ab58f80419d79c0 https://www.encodeproject.org/files/ENCFF249UWH/@@download/ENCFF249UWH.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF416EHB bam alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKA, ENCFF018NEO 885254794 ENCODE Processing Pipeline e5395179126c927ab13b85a0d2aed839 https://www.encodeproject.org/files/ENCFF416EHB/@@download/ENCFF416EHB.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF120IBZ bam alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKF, ENCFF018NEO 1491924284 ENCODE Processing Pipeline 7dd29ea4c8d750d0918b51557c88a45e https://www.encodeproject.org/files/ENCFF120IBZ/@@download/ENCFF120IBZ.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF069OSX bed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF120IBZ, ENCFF517WIG 1757256 ENCODE Processing Pipeline 4c368483f99e2e41b768ca48805a4b9c https://www.encodeproject.org/files/ENCFF069OSX/@@download/ENCFF069OSX.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF711NMV bed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF416EHB, ENCFF517WIG 1670339 ENCODE Processing Pipeline 4492abf1a107b91e1ff28bb406e4d84e https://www.encodeproject.org/files/ENCFF711NMV/@@download/ENCFF711NMV.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF078BYE bed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF120IBZ, ENCFF416EHB, ENCFF517WIG 1714786 ENCODE Processing Pipeline 881b05b5b69173c1b9d81d919a70c649 https://www.encodeproject.org/files/ENCFF078BYE/@@download/ENCFF078BYE.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF195CBQ bigBed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF069OSX 4128116 ENCODE Processing Pipeline 966dadb7bb6e31f3010562415f92c01f https://www.encodeproject.org/files/ENCFF195CBQ/@@download/ENCFF195CBQ.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF914CEM bigBed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF711NMV 3862229 ENCODE Processing Pipeline 9aa318a73e155804f11cc24d63c95395 https://www.encodeproject.org/files/ENCFF914CEM/@@download/ENCFF914CEM.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF999QJA bigBed narrowPeak peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF078BYE 3947833 ENCODE Processing Pipeline 487ee26ec644dbee1d922b0e824c1e17 https://www.encodeproject.org/files/ENCFF999QJA/@@download/ENCFF999QJA.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF832ZXM bigWig signal p-value ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF120IBZ, ENCFF517WIG 663620877 ENCODE Processing Pipeline 9baab705fde1cfeb3a82126470f63599 https://www.encodeproject.org/files/ENCFF832ZXM/@@download/ENCFF832ZXM.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF230HPF bigWig signal p-value ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF416EHB, ENCFF517WIG 523652727 ENCODE Processing Pipeline 7c2e0b706209dd497fc607b1d8ed7b7f https://www.encodeproject.org/files/ENCFF230HPF/@@download/ENCFF230HPF.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF417MGA bigWig signal p-value ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF120IBZ, ENCFF416EHB, ENCFF517WIG 940764780 ENCODE Processing Pipeline f005291705d0c1d6cbc5a4ca22a41337 https://www.encodeproject.org/files/ENCFF417MGA/@@download/ENCFF417MGA.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF139CTV bigWig fold change over control ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF120IBZ, ENCFF517WIG 679347614 ENCODE Processing Pipeline 049ffb8698ad0c5343574775b7ec97e4 https://www.encodeproject.org/files/ENCFF139CTV/@@download/ENCFF139CTV.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF509RVR bigWig fold change over control ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF416EHB, ENCFF517WIG 531443695 ENCODE Processing Pipeline 40d8f0bf63789c2320e92c9f5839975a https://www.encodeproject.org/files/ENCFF509RVR/@@download/ENCFF509RVR.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF925YTU bigWig fold change over control ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF120IBZ, ENCFF416EHB, ENCFF517WIG 939231758 ENCODE Processing Pipeline 45e2b446ab75361f9274244ab0a728e7 https://www.encodeproject.org/files/ENCFF925YTU/@@download/ENCFF925YTU.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF456EQG bed narrowPeak replicated peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069OSX, ENCFF078BYE, ENCFF711NMV 958113 ENCODE Processing Pipeline 04f3857d20844f7d005dc9391c12b231 https://www.encodeproject.org/files/ENCFF456EQG/@@download/ENCFF456EQG.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF738TSR bigBed narrowPeak replicated peaks ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF456EQG 2098840 ENCODE Processing Pipeline a5f892c6eb4e7c4c16ead9e0fcac9a7d https://www.encodeproject.org/files/ENCFF738TSR/@@download/ENCFF738TSR.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF002AOW fastq reads ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1683182448 Bing Ren, UCSD e13d2f046fa66cfa28ca722c18c3a5ba SRA:SRR3651955 https://www.encodeproject.org/files/ENCFF002AOW/@@download/ENCFF002AOW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQQ/ released mild to moderate bottlenecking ENCFF002AOY fastq reads ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1648781640 Bing Ren, UCSD 0d17f48314781d70b69ae71399ecf304 SRA:SRR3651954 https://www.encodeproject.org/files/ENCFF002AOY/@@download/ENCFF002AOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQR/ released mild to moderate bottlenecking ENCFF144GQX bam alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOW, ENCFF806TVZ 1199790109 ENCODE Processing Pipeline 4fa01782612f8eb745e0830e0854ebb8 https://www.encodeproject.org/files/ENCFF144GQX/@@download/ENCFF144GQX.bam mm10-minimal archived mild to moderate bottlenecking ENCFF978YHH bam alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOY, ENCFF806TVZ 1260131219 ENCODE Processing Pipeline c1f36f9c43aa0cbbbf9d20653b7de704 https://www.encodeproject.org/files/ENCFF978YHH/@@download/ENCFF978YHH.bam mm10-minimal archived mild to moderate bottlenecking ENCFF949HUU bed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF144GQX, ENCFF148UUT, ENCFF791KJV 824325 ENCODE Processing Pipeline d4557dfb8eb82c7b56b3b807d5853096 https://www.encodeproject.org/files/ENCFF949HUU/@@download/ENCFF949HUU.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF959ODN bigBed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF479DVM 1881634 ENCODE Processing Pipeline 1ec32a6dae021b45c6f4c562aa1a92d3 https://www.encodeproject.org/files/ENCFF959ODN/@@download/ENCFF959ODN.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF479DVM bed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF978YHH 721137 ENCODE Processing Pipeline 78b3121fa870bce9fb9dc3b5d3216869 https://www.encodeproject.org/files/ENCFF479DVM/@@download/ENCFF479DVM.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF922RLS bigBed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF584ZEZ 2311562 ENCODE Processing Pipeline 55737972b2ffc4b71d3c492201bfe255 https://www.encodeproject.org/files/ENCFF922RLS/@@download/ENCFF922RLS.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF584ZEZ bed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144GQX, ENCFF148UUT, ENCFF791KJV, ENCFF978YHH 916369 ENCODE Processing Pipeline a56614d13636bfb00581bd27f92e2605 https://www.encodeproject.org/files/ENCFF584ZEZ/@@download/ENCFF584ZEZ.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF475JFM bigBed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF949HUU 2136117 ENCODE Processing Pipeline 9a52eb9ebfc51ed72c1a73dc7d369457 https://www.encodeproject.org/files/ENCFF475JFM/@@download/ENCFF475JFM.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF201MQP bigWig signal p-value ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF978YHH 454422079 ENCODE Processing Pipeline 0323b5a16290e72ea2808585c9bb491e https://www.encodeproject.org/files/ENCFF201MQP/@@download/ENCFF201MQP.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF833HMN bigWig signal p-value ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF144GQX, ENCFF148UUT, ENCFF791KJV 481886403 ENCODE Processing Pipeline de7bedcb3b399469b9adb699dd55577f https://www.encodeproject.org/files/ENCFF833HMN/@@download/ENCFF833HMN.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF981CEA bigWig signal p-value ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144GQX, ENCFF148UUT, ENCFF791KJV, ENCFF978YHH 834133864 ENCODE Processing Pipeline 28e8b6c2eccb1acdeedbdca73d7778b2 https://www.encodeproject.org/files/ENCFF981CEA/@@download/ENCFF981CEA.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF024OPZ bigWig fold change over control ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF144GQX, ENCFF148UUT, ENCFF791KJV 514149146 ENCODE Processing Pipeline 24f3bbace878be4f2f80318fa3e2b701 https://www.encodeproject.org/files/ENCFF024OPZ/@@download/ENCFF024OPZ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF581DGG bigWig fold change over control ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF978YHH 523573864 ENCODE Processing Pipeline 8941f133ef523c12cd611e058cf387c0 https://www.encodeproject.org/files/ENCFF581DGG/@@download/ENCFF581DGG.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF293BGS bigWig fold change over control ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144GQX, ENCFF148UUT, ENCFF791KJV, ENCFF978YHH 832848641 ENCODE Processing Pipeline 1b4799e0b0681fb97db4f0eaf778525d https://www.encodeproject.org/files/ENCFF293BGS/@@download/ENCFF293BGS.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF984RIB bigBed narrowPeak replicated peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF798DBN 1771648 ENCODE Processing Pipeline 6cbe5c3cd7bd3f471d0830188fb07e93 https://www.encodeproject.org/files/ENCFF984RIB/@@download/ENCFF984RIB.bigBed mm10-minimal archived mild to moderate bottlenecking ENCFF798DBN bed narrowPeak replicated peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF479DVM, ENCFF584ZEZ, ENCFF949HUU 686604 ENCODE Processing Pipeline 9d8ae677cf4adaf26f1440311e97b6e2 https://www.encodeproject.org/files/ENCFF798DBN/@@download/ENCFF798DBN.bed.gz mm10-minimal archived mild to moderate bottlenecking ENCFF379DBS bam unfiltered alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AOY, ENCFF018NEO 1758010869 ENCODE Processing Pipeline 25d072cb8e5954b01ad059f4301433e1 https://www.encodeproject.org/files/ENCFF379DBS/@@download/ENCFF379DBS.bam mm10 released mild to moderate bottlenecking ENCFF027FRS bam unfiltered alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOW, ENCFF018NEO 1784741532 ENCODE Processing Pipeline 7b43eaf044f3f3f7f8188c9826310606 https://www.encodeproject.org/files/ENCFF027FRS/@@download/ENCFF027FRS.bam mm10 released mild to moderate bottlenecking ENCFF080NOM bam alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOW, ENCFF018NEO 1199548479 ENCODE Processing Pipeline 7e08adc5f6ee92dadd98fb285b54ffad https://www.encodeproject.org/files/ENCFF080NOM/@@download/ENCFF080NOM.bam mm10 released mild to moderate bottlenecking ENCFF879GPS bam alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AOY, ENCFF018NEO 1259924645 ENCODE Processing Pipeline b4e1c9cab4d238d35a38b01ef5032030 https://www.encodeproject.org/files/ENCFF879GPS/@@download/ENCFF879GPS.bam mm10 released mild to moderate bottlenecking ENCFF665TAT bed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF080NOM, ENCFF453URD, ENCFF702TNM 824776 ENCODE Processing Pipeline e332573395793f5781d0ab71ad1d52af https://www.encodeproject.org/files/ENCFF665TAT/@@download/ENCFF665TAT.bed.gz mm10 released mild to moderate bottlenecking ENCFF540IHT bed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080NOM, ENCFF453URD, ENCFF702TNM, ENCFF879GPS 953908 ENCODE Processing Pipeline 2788ae3ce7f04ce4df3aa10f8be36ff3 https://www.encodeproject.org/files/ENCFF540IHT/@@download/ENCFF540IHT.bed.gz mm10 released mild to moderate bottlenecking ENCFF535JXW bed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453URD, ENCFF702TNM, ENCFF879GPS 721692 ENCODE Processing Pipeline f1a94090189da97933340cda261db46c https://www.encodeproject.org/files/ENCFF535JXW/@@download/ENCFF535JXW.bed.gz mm10 released mild to moderate bottlenecking ENCFF069EEK bigBed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF665TAT 2138207 ENCODE Processing Pipeline 6ed3f5f4ac5fd3b8ccbeca4cf2f94b86 https://www.encodeproject.org/files/ENCFF069EEK/@@download/ENCFF069EEK.bigBed mm10 released mild to moderate bottlenecking ENCFF743TKZ bigBed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF535JXW 1883742 ENCODE Processing Pipeline d9ec4a648de24d767b1f0e850b02ed35 https://www.encodeproject.org/files/ENCFF743TKZ/@@download/ENCFF743TKZ.bigBed mm10 released mild to moderate bottlenecking ENCFF350ANM bigBed narrowPeak peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF540IHT 2370390 ENCODE Processing Pipeline a1fcd301b528b5218dbd7581f2305275 https://www.encodeproject.org/files/ENCFF350ANM/@@download/ENCFF350ANM.bigBed mm10 released mild to moderate bottlenecking ENCFF282ALS bigWig signal p-value ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF080NOM, ENCFF453URD, ENCFF702TNM 487262185 ENCODE Processing Pipeline 62e0e556deeadc081cb8a7c5bc7896bc https://www.encodeproject.org/files/ENCFF282ALS/@@download/ENCFF282ALS.bigWig mm10 released mild to moderate bottlenecking ENCFF167ECY bigWig signal p-value ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453URD, ENCFF702TNM, ENCFF879GPS 487726755 ENCODE Processing Pipeline 5d3137f53a02ff8cab84abcb14646c48 https://www.encodeproject.org/files/ENCFF167ECY/@@download/ENCFF167ECY.bigWig mm10 released mild to moderate bottlenecking ENCFF220SSN bigWig signal p-value ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080NOM, ENCFF453URD, ENCFF702TNM, ENCFF879GPS 559422396 ENCODE Processing Pipeline 7d7985683df9400527308127a25d34bb https://www.encodeproject.org/files/ENCFF220SSN/@@download/ENCFF220SSN.bigWig mm10 released mild to moderate bottlenecking ENCFF367ZSE bigWig fold change over control ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF080NOM, ENCFF453URD, ENCFF702TNM 513928871 ENCODE Processing Pipeline 5cd2bfa0d764f90ec46c067d34c09776 https://www.encodeproject.org/files/ENCFF367ZSE/@@download/ENCFF367ZSE.bigWig mm10 released mild to moderate bottlenecking ENCFF150JQT bigWig fold change over control ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF453URD, ENCFF702TNM, ENCFF879GPS 524167467 ENCODE Processing Pipeline 242dab84e13b3f627d581db6ccc20999 https://www.encodeproject.org/files/ENCFF150JQT/@@download/ENCFF150JQT.bigWig mm10 released mild to moderate bottlenecking ENCFF841NIU bigWig fold change over control ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF080NOM, ENCFF453URD, ENCFF702TNM, ENCFF879GPS 786199927 ENCODE Processing Pipeline 4e075d251a79a1c9a135c0b09929d747 https://www.encodeproject.org/files/ENCFF841NIU/@@download/ENCFF841NIU.bigWig mm10 released mild to moderate bottlenecking ENCFF789SXJ bed narrowPeak replicated peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF535JXW, ENCFF540IHT, ENCFF665TAT 633092 ENCODE Processing Pipeline 2a07cebd8aaf73b0511eb952ac3e37aa https://www.encodeproject.org/files/ENCFF789SXJ/@@download/ENCFF789SXJ.bed.gz mm10 released mild to moderate bottlenecking ENCFF673EKK bigBed narrowPeak replicated peaks ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF789SXJ 1668053 ENCODE Processing Pipeline 21296b3b4699dc09d7d00385b988ea95 https://www.encodeproject.org/files/ENCFF673EKK/@@download/ENCFF673EKK.bigBed mm10 released mild to moderate bottlenecking ENCFF001KGS bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KHA 436676865 Bing Ren, UCSD 745cfc44b2f61c8955623eb1ad90eabe https://www.encodeproject.org/files/ENCFF001KGS/@@download/ENCFF001KGS.bam mm9 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KGT bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KHG 391008398 Bing Ren, UCSD ff19e38bc3161116fb7e1794332cc1da https://www.encodeproject.org/files/ENCFF001KGT/@@download/ENCFF001KGT.bam mm9 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KGU bigBed broadPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXE 768686 Bing Ren, UCSD 1feadafe428f9c4a5443adb593a3203c https://www.encodeproject.org/files/ENCFF001KGU/@@download/ENCFF001KGU.bigBed mm9 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KGY bigWig signal ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGS, ENCFF001KGT 63501358 Bing Ren, UCSD c1744de88b527fd1bd617620f47bbb39 https://www.encodeproject.org/files/ENCFF001KGY/@@download/ENCFF001KGY.bigWig mm9 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KHA fastq reads ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 522294587 Bing Ren, UCSD 20b516aa9a25983f5da413d511187c00 https://www.encodeproject.org/files/ENCFF001KHA/@@download/ENCFF001KHA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIO/ released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KHG fastq reads ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 490397001 Bing Ren, UCSD 2c06d926ba216f90a9c81dc34ec5a6ea https://www.encodeproject.org/files/ENCFF001KHG/@@download/ENCFF001KHG.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIU/ released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001XXE bed broadPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGS, ENCFF001KGT 494012 Bing Ren, UCSD bce973dffa4522bd4cdc38cf38420e91 https://www.encodeproject.org/files/ENCFF001XXE/@@download/ENCFF001XXE.bed.gz mm9 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF228SZB bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KHA, ENCFF806TVZ 422671952 ENCODE Processing Pipeline 539fbd852847847bd1e40fdad360ee0c https://www.encodeproject.org/files/ENCFF228SZB/@@download/ENCFF228SZB.bam mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF626DGO bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KHG, ENCFF806TVZ 394568948 ENCODE Processing Pipeline fedcd4c573bc6b032419a1a3fd35e5fb https://www.encodeproject.org/files/ENCFF626DGO/@@download/ENCFF626DGO.bam mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF081JCP bigBed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF160CFH 4397722 ENCODE Processing Pipeline 8d47acc13fa81953228cb3ca5a254c80 https://www.encodeproject.org/files/ENCFF081JCP/@@download/ENCFF081JCP.bigBed mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF717UNN bed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF626DGO 1815938 ENCODE Processing Pipeline 77517be5c8146d0e91f7d57a9e216a00 https://www.encodeproject.org/files/ENCFF717UNN/@@download/ENCFF717UNN.bed.gz mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF160CFH bed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF228SZB, ENCFF419RGB, ENCFF452QHE 1489405 ENCODE Processing Pipeline 179ddd1a694384fb8dc4469eaa69fb94 https://www.encodeproject.org/files/ENCFF160CFH/@@download/ENCFF160CFH.bed.gz mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF365MJR bed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF228SZB, ENCFF419RGB, ENCFF452QHE, ENCFF626DGO 1463851 ENCODE Processing Pipeline 5fac1b4ef39faeb7cfb91fa963f2b2d0 https://www.encodeproject.org/files/ENCFF365MJR/@@download/ENCFF365MJR.bed.gz mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF699TAP bigBed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF717UNN 5195351 ENCODE Processing Pipeline 92c09630888d5528c6e9b8b9c4939a8a https://www.encodeproject.org/files/ENCFF699TAP/@@download/ENCFF699TAP.bigBed mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF160BYG bigWig signal p-value ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF228SZB, ENCFF419RGB, ENCFF452QHE, ENCFF626DGO 351790449 ENCODE Processing Pipeline b762ebf07e437d6e11e5841584eb3d9c https://www.encodeproject.org/files/ENCFF160BYG/@@download/ENCFF160BYG.bigWig mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF666WDK bigBed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF365MJR 4229807 ENCODE Processing Pipeline 54bec471a22044ddeca3924afe1b66f6 https://www.encodeproject.org/files/ENCFF666WDK/@@download/ENCFF666WDK.bigBed mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF187HJB bigWig signal p-value ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF626DGO 240821505 ENCODE Processing Pipeline 8dd850416b023d64e56769db164bc35a https://www.encodeproject.org/files/ENCFF187HJB/@@download/ENCFF187HJB.bigWig mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF933CGN bigWig fold change over control ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF228SZB, ENCFF419RGB, ENCFF452QHE 213669645 ENCODE Processing Pipeline c1571e1ca36c651fb0c1f7f3f34b73e2 https://www.encodeproject.org/files/ENCFF933CGN/@@download/ENCFF933CGN.bigWig mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF864NXX bigWig fold change over control ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF228SZB, ENCFF419RGB, ENCFF452QHE, ENCFF626DGO 339199986 ENCODE Processing Pipeline 3cbb1cf64fdf8d683267745101e24a05 https://www.encodeproject.org/files/ENCFF864NXX/@@download/ENCFF864NXX.bigWig mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF894BBR bigBed narrowPeak replicated peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF899DDS 3533683 ENCODE Processing Pipeline 4733f18858735f7f9ff51c1c9080beb2 https://www.encodeproject.org/files/ENCFF894BBR/@@download/ENCFF894BBR.bigBed mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF580UVY bigWig signal p-value ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF228SZB, ENCFF419RGB, ENCFF452QHE 271334242 ENCODE Processing Pipeline cad919cfc7d4d9671cf09d9f1cc0d909 https://www.encodeproject.org/files/ENCFF580UVY/@@download/ENCFF580UVY.bigWig mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF754VYE bigWig fold change over control ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF419RGB, ENCFF452QHE, ENCFF626DGO 186314683 ENCODE Processing Pipeline 67b8b80fc9e9f30c8592619d1699a7d5 https://www.encodeproject.org/files/ENCFF754VYE/@@download/ENCFF754VYE.bigWig mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF899DDS bed narrowPeak replicated peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF160CFH, ENCFF365MJR, ENCFF717UNN 1647370 ENCODE Processing Pipeline 735748ce2a5e6388832b9cffdb507424 https://www.encodeproject.org/files/ENCFF899DDS/@@download/ENCFF899DDS.bed.gz mm10-minimal archived low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF056JGV bam unfiltered alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHA, ENCFF018NEO 583900869 ENCODE Processing Pipeline 04b811d34a863a7b547c3d713cb9a7bb https://www.encodeproject.org/files/ENCFF056JGV/@@download/ENCFF056JGV.bam mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF176BPZ bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHA, ENCFF018NEO 422608806 ENCODE Processing Pipeline 0829e84b7bd0a4f3a321c91a3521db5d https://www.encodeproject.org/files/ENCFF176BPZ/@@download/ENCFF176BPZ.bam mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF555QAS bam unfiltered alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHG, ENCFF018NEO 546384183 ENCODE Processing Pipeline ac5a53e44d60cb5532a3bcd50de236fd https://www.encodeproject.org/files/ENCFF555QAS/@@download/ENCFF555QAS.bam mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF100LKR bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHG, ENCFF018NEO 394502249 ENCODE Processing Pipeline 7d823e1d72cfef24cc67919f3f0dbb32 https://www.encodeproject.org/files/ENCFF100LKR/@@download/ENCFF100LKR.bam mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF653KKE bed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF100LKR, ENCFF176BPZ, ENCFF842YLI, ENCFF951GMQ 1463785 ENCODE Processing Pipeline 06e11861da6c2317f00425967cb9050b https://www.encodeproject.org/files/ENCFF653KKE/@@download/ENCFF653KKE.bed.gz mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF432YZK bigBed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF381LCZ 3702388 ENCODE Processing Pipeline 90a8f4a6ef1425f9afc4095c69243c12 https://www.encodeproject.org/files/ENCFF432YZK/@@download/ENCFF432YZK.bigBed mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF219BOZ bigWig fold change over control ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF176BPZ, ENCFF842YLI, ENCFF951GMQ 213673796 ENCODE Processing Pipeline 361bccd50c6475bb2cc5739354363a58 https://www.encodeproject.org/files/ENCFF219BOZ/@@download/ENCFF219BOZ.bigWig mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF122IGI bigWig fold change over control ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF100LKR, ENCFF842YLI 148137802 ENCODE Processing Pipeline 5b69aa8b06618aa02f8e56466334f8bb https://www.encodeproject.org/files/ENCFF122IGI/@@download/ENCFF122IGI.bigWig mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF876UMM bed narrowPeak replicated peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF381LCZ, ENCFF634ZHG, ENCFF653KKE 1560947 ENCODE Processing Pipeline e27a1fdf5a567c3899061914339fad02 https://www.encodeproject.org/files/ENCFF876UMM/@@download/ENCFF876UMM.bed.gz mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF634ZHG bed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF176BPZ, ENCFF842YLI, ENCFF951GMQ 1487045 ENCODE Processing Pipeline a2ed90d7fd5d29b19b860cb97bf33bb9 https://www.encodeproject.org/files/ENCFF634ZHG/@@download/ENCFF634ZHG.bed.gz mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF381LCZ bed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF100LKR, ENCFF842YLI 1258764 ENCODE Processing Pipeline d5064e972d16a8edab25434bacc09b81 https://www.encodeproject.org/files/ENCFF381LCZ/@@download/ENCFF381LCZ.bed.gz mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF014HJI bigBed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF634ZHG 4393508 ENCODE Processing Pipeline 7de72660b7d5e19df98dde70bb264eab https://www.encodeproject.org/files/ENCFF014HJI/@@download/ENCFF014HJI.bigBed mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF327YVM bigBed narrowPeak peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF653KKE 4230212 ENCODE Processing Pipeline 7c96eaa1a7674adfe3e33c57978b53f5 https://www.encodeproject.org/files/ENCFF327YVM/@@download/ENCFF327YVM.bigBed mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF946JIY bigWig signal p-value ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF176BPZ, ENCFF842YLI, ENCFF951GMQ 276033034 ENCODE Processing Pipeline 5d5a81520fb4d223502f74e868b4c987 https://www.encodeproject.org/files/ENCFF946JIY/@@download/ENCFF946JIY.bigWig mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF225DPY bigWig signal p-value ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF100LKR, ENCFF842YLI 178295599 ENCODE Processing Pipeline 9bbd2931ace9ba3197342505a22859df https://www.encodeproject.org/files/ENCFF225DPY/@@download/ENCFF225DPY.bigWig mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF007VGO bigWig signal p-value ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF100LKR, ENCFF176BPZ, ENCFF842YLI, ENCFF951GMQ 351711855 ENCODE Processing Pipeline 7a6d58a22b028c9214b5bb9810397f26 https://www.encodeproject.org/files/ENCFF007VGO/@@download/ENCFF007VGO.bigWig mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF034YQZ bigWig fold change over control ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF100LKR, ENCFF176BPZ, ENCFF842YLI, ENCFF951GMQ 338628277 ENCODE Processing Pipeline 1ed6b1fc45f5cd63df8ffa96b228d8bb https://www.encodeproject.org/files/ENCFF034YQZ/@@download/ENCFF034YQZ.bigWig mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF895QGE bigBed narrowPeak replicated peaks ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF876UMM 3362036 ENCODE Processing Pipeline 272f232f1f956dfd6509f1e99c6ed881 https://www.encodeproject.org/files/ENCFF895QGE/@@download/ENCFF895QGE.bigBed mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF002ESH fastq reads ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 597740288 Bing Ren, UCSD 27825377c3d763c87de8ad83d59a049b SRA:SRR3652982 https://www.encodeproject.org/files/ENCFF002ESH/@@download/ENCFF002ESH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYA/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESJ fastq reads ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 741845424 Bing Ren, UCSD c6a4fa18f2a080b4cd9e47bcd893a397 SRA:SRR3652984 https://www.encodeproject.org/files/ENCFF002ESJ/@@download/ENCFF002ESJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXY/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF870AMY fastq reads ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 1431659206 Bing Ren, UCSD f8e5cf853b96f48b3b2c03835e4627fc SRA:SRR3652983 https://www.encodeproject.org/files/ENCFF870AMY/@@download/ENCFF870AMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYA/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF573JQF fastq reads ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 1100814999 Bing Ren, UCSD 2bc87a572383d2d5aa497dc9da995f28 SRA:SRR3652985 https://www.encodeproject.org/files/ENCFF573JQF/@@download/ENCFF573JQF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXY/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF504BZJ bam alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESH, ENCFF806TVZ, ENCFF870AMY 1812428463 ENCODE Processing Pipeline c17bbaeef125ce646033a000b2c741e2 https://www.encodeproject.org/files/ENCFF504BZJ/@@download/ENCFF504BZJ.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF571ERG bam alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESJ, ENCFF573JQF, ENCFF806TVZ 1628163687 ENCODE Processing Pipeline d1730509adf38e31c9a6b848d0ae8efa https://www.encodeproject.org/files/ENCFF571ERG/@@download/ENCFF571ERG.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF282KBP bed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF504BZJ 703494 ENCODE Processing Pipeline e5aa79e1da027991ee382a6c12b61956 https://www.encodeproject.org/files/ENCFF282KBP/@@download/ENCFF282KBP.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF399VOQ bigBed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF516VFR 1514998 ENCODE Processing Pipeline dcf52d07b131567592e6c7224fd340f4 https://www.encodeproject.org/files/ENCFF399VOQ/@@download/ENCFF399VOQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF122HLJ bigWig signal p-value ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF504BZJ 551736655 ENCODE Processing Pipeline edc54cce46f2f64bd91072414360868b https://www.encodeproject.org/files/ENCFF122HLJ/@@download/ENCFF122HLJ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF516VFR bed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF571ERG 535766 ENCODE Processing Pipeline 76919744e83eb9ef87dee4143197d28b https://www.encodeproject.org/files/ENCFF516VFR/@@download/ENCFF516VFR.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF791RVX bed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF504BZJ, ENCFF571ERG 489655 ENCODE Processing Pipeline 773f3ecae5a766261356856bce32924e https://www.encodeproject.org/files/ENCFF791RVX/@@download/ENCFF791RVX.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF354JKZ bigBed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF791RVX 1322107 ENCODE Processing Pipeline 82d1622c9fe9a15f3e217cfc6399efb0 https://www.encodeproject.org/files/ENCFF354JKZ/@@download/ENCFF354JKZ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF015PDQ bigBed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF282KBP 1920913 ENCODE Processing Pipeline f789a6961327cefdd2b8e75ecfdb00bd https://www.encodeproject.org/files/ENCFF015PDQ/@@download/ENCFF015PDQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF461UWB bigWig signal p-value ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF571ERG 575444981 ENCODE Processing Pipeline 8b015c67dfea731fae24acb1c82f08fe https://www.encodeproject.org/files/ENCFF461UWB/@@download/ENCFF461UWB.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF031RSS bigWig signal p-value ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF504BZJ, ENCFF571ERG 558311409 ENCODE Processing Pipeline f791985511ef5321d620ddf21f1efd1a https://www.encodeproject.org/files/ENCFF031RSS/@@download/ENCFF031RSS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF750WDM bigWig fold change over control ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF504BZJ 637790256 ENCODE Processing Pipeline f674d0250eadcf6627f6ca3a2b47131e https://www.encodeproject.org/files/ENCFF750WDM/@@download/ENCFF750WDM.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF578ZEQ bigWig fold change over control ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF571ERG 614861697 ENCODE Processing Pipeline 4a15b8ef6528fa52f627b9bbb14246c6 https://www.encodeproject.org/files/ENCFF578ZEQ/@@download/ENCFF578ZEQ.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF088PHQ bigBed narrowPeak replicated peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF096QKZ 1013681 ENCODE Processing Pipeline b69822461a2eab00c29b39c840cd4904 https://www.encodeproject.org/files/ENCFF088PHQ/@@download/ENCFF088PHQ.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF074JRN bigWig fold change over control ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF504BZJ, ENCFF571ERG 1019584277 ENCODE Processing Pipeline 3946f933fc50552ac2ca52da0c296cf2 https://www.encodeproject.org/files/ENCFF074JRN/@@download/ENCFF074JRN.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF096QKZ bed narrowPeak replicated peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF282KBP, ENCFF516VFR, ENCFF791RVX 445971 ENCODE Processing Pipeline 77ddd89777a2e83574ab3517e3c37a5c https://www.encodeproject.org/files/ENCFF096QKZ/@@download/ENCFF096QKZ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF661KTF bam unfiltered alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESH, ENCFF018NEO, ENCFF870AMY 2204863723 ENCODE Processing Pipeline 85629ac2a30a6a45544498c70d1ba142 https://www.encodeproject.org/files/ENCFF661KTF/@@download/ENCFF661KTF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF648CWC bam unfiltered alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESJ, ENCFF018NEO, ENCFF573JQF 2080947528 ENCODE Processing Pipeline a2408bfc89365205ced3b89b177a7532 https://www.encodeproject.org/files/ENCFF648CWC/@@download/ENCFF648CWC.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF788UXL bam alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESJ, ENCFF018NEO, ENCFF573JQF 1376548482 ENCODE Processing Pipeline ba16abc424de4332bb862f73a8dc7bfb https://www.encodeproject.org/files/ENCFF788UXL/@@download/ENCFF788UXL.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF079QHR bam alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESH, ENCFF018NEO, ENCFF870AMY 1496518177 ENCODE Processing Pipeline 553fd6612f35d8b8fa7b9dacb68c4163 https://www.encodeproject.org/files/ENCFF079QHR/@@download/ENCFF079QHR.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF989WNP bed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF079QHR, ENCFF855ISH 713832 ENCODE Processing Pipeline 7bf3fd4c423848d9a26b731d0e70cb12 https://www.encodeproject.org/files/ENCFF989WNP/@@download/ENCFF989WNP.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF570VVP bed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF788UXL, ENCFF855ISH 292510 ENCODE Processing Pipeline cb69a9fb6d7f85fe29da7ee444447621 https://www.encodeproject.org/files/ENCFF570VVP/@@download/ENCFF570VVP.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF620RXO bed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF079QHR, ENCFF788UXL, ENCFF855ISH 501245 ENCODE Processing Pipeline ab4db768f21b95318a5405ea71700f5d https://www.encodeproject.org/files/ENCFF620RXO/@@download/ENCFF620RXO.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF665SRX bigBed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF989WNP 1940317 ENCODE Processing Pipeline 64cf6da7718f2b40db4ba54e8d9ec278 https://www.encodeproject.org/files/ENCFF665SRX/@@download/ENCFF665SRX.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF313TBW bigBed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF570VVP 848373 ENCODE Processing Pipeline 176fbd42d302b8dbbfa32f45b3766f29 https://www.encodeproject.org/files/ENCFF313TBW/@@download/ENCFF313TBW.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF453HMI bigBed narrowPeak peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF620RXO 1341864 ENCODE Processing Pipeline 87472e7f9d426fa0401b117effc151d9 https://www.encodeproject.org/files/ENCFF453HMI/@@download/ENCFF453HMI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF550FPZ bigWig signal p-value ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF079QHR, ENCFF855ISH 561437607 ENCODE Processing Pipeline 0aee1d64e564128c8e0c3e9ce4a9d9a2 https://www.encodeproject.org/files/ENCFF550FPZ/@@download/ENCFF550FPZ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF093NZM bigWig signal p-value ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF788UXL, ENCFF855ISH 278705069 ENCODE Processing Pipeline 0c17c285445e741f7641f8ae5c003cc8 https://www.encodeproject.org/files/ENCFF093NZM/@@download/ENCFF093NZM.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF769POO bigWig signal p-value ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF079QHR, ENCFF788UXL, ENCFF855ISH 558661659 ENCODE Processing Pipeline a1a2cfae8a8990d647265b2532ffdb5f https://www.encodeproject.org/files/ENCFF769POO/@@download/ENCFF769POO.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF904XLV bigWig fold change over control ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF079QHR, ENCFF855ISH 633457293 ENCODE Processing Pipeline 9414774ea861874be3e9cabeba6d8ddd https://www.encodeproject.org/files/ENCFF904XLV/@@download/ENCFF904XLV.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF591UVF bigWig fold change over control ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF788UXL, ENCFF855ISH 473406744 ENCODE Processing Pipeline 5368700045a33c74cd69108d2aee46dd https://www.encodeproject.org/files/ENCFF591UVF/@@download/ENCFF591UVF.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF749LHU bigWig fold change over control ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF079QHR, ENCFF788UXL, ENCFF855ISH 970844226 ENCODE Processing Pipeline 9b0077d4f9ac88a3a22fc0cc34432f9d https://www.encodeproject.org/files/ENCFF749LHU/@@download/ENCFF749LHU.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF913XPA bed narrowPeak replicated peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF570VVP, ENCFF620RXO, ENCFF989WNP 445404 ENCODE Processing Pipeline f338bff43d4ee65d0dfdec4ccaef624e https://www.encodeproject.org/files/ENCFF913XPA/@@download/ENCFF913XPA.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF881FZU bigBed narrowPeak replicated peaks ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF913XPA 1007331 ENCODE Processing Pipeline bc7b2660e8cfa761e731e21fc6539cc3 https://www.encodeproject.org/files/ENCFF881FZU/@@download/ENCFF881FZU.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001JZO bam alignments ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001JZY 666251173 Bing Ren, UCSD 0892d9fd5db59311e87eba87b08357be https://www.encodeproject.org/files/ENCFF001JZO/@@download/ENCFF001JZO.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001JZY fastq reads ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 818332395 Bing Ren, UCSD 655e7125ee29ac02f84241633ac5c775 https://www.encodeproject.org/files/ENCFF001JZY/@@download/ENCFF001JZY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAM/ released low read length insufficient read depth, control insufficient read depth ENCFF001JZZ fastq reads ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 542907210 Bing Ren, UCSD f25702abdae44db208923177f225d433 https://www.encodeproject.org/files/ENCFF001JZZ/@@download/ENCFF001JZZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAK/ released low read length insufficient read depth, control insufficient read depth ENCFF535FWD bam unfiltered alignments ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JZY, ENCFF018NEO 900304806 ENCODE Processing Pipeline 82f9243d3bd4cd799bf9f43491a5ea9f https://www.encodeproject.org/files/ENCFF535FWD/@@download/ENCFF535FWD.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF582LBF bam unfiltered alignments ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JZZ, ENCFF018NEO 629110364 ENCODE Processing Pipeline b1aa26f9c5f308ff647103b3dc92231c https://www.encodeproject.org/files/ENCFF582LBF/@@download/ENCFF582LBF.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF414ERP bam alignments ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JZZ, ENCFF018NEO 462759042 ENCODE Processing Pipeline 9f3b37ba2ac56acbf658750485626328 https://www.encodeproject.org/files/ENCFF414ERP/@@download/ENCFF414ERP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF693CWR bam alignments ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JZY, ENCFF018NEO 626891152 ENCODE Processing Pipeline 1caaf73c737bb5c46028bc45ec7cba92 https://www.encodeproject.org/files/ENCFF693CWR/@@download/ENCFF693CWR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF844NOF bigBed narrowPeak peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF055WIO 12655154 ENCODE Processing Pipeline 292a9914ae187b7cf28d3140de99104f https://www.encodeproject.org/files/ENCFF844NOF/@@download/ENCFF844NOF.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF741OSK bigBed narrowPeak peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF862EKP 9923728 ENCODE Processing Pipeline b57d3a40f4d905815873af551cef26f5 https://www.encodeproject.org/files/ENCFF741OSK/@@download/ENCFF741OSK.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF862EKP bed narrowPeak peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF414ERP, ENCFF693CWR 3527028 ENCODE Processing Pipeline 77dfcfb8e1f54f75a36dffae5680414d https://www.encodeproject.org/files/ENCFF862EKP/@@download/ENCFF862EKP.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF667AOL bigBed narrowPeak peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF736MPD 6741082 ENCODE Processing Pipeline 057974975c0a506ec88c6841f392172f https://www.encodeproject.org/files/ENCFF667AOL/@@download/ENCFF667AOL.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF055WIO bed narrowPeak peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF693CWR 4675270 ENCODE Processing Pipeline ce4b4a2944ae02a21fb09632cd173c5a https://www.encodeproject.org/files/ENCFF055WIO/@@download/ENCFF055WIO.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF736MPD bed narrowPeak peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF414ERP 2779386 ENCODE Processing Pipeline 565f706191dd9a4dbf75759a9c58b27e https://www.encodeproject.org/files/ENCFF736MPD/@@download/ENCFF736MPD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF706ZMG bigWig signal p-value ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF693CWR 357150532 ENCODE Processing Pipeline 9e3443ded1c3f5130931b764352741a9 https://www.encodeproject.org/files/ENCFF706ZMG/@@download/ENCFF706ZMG.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF444BMY bigWig signal p-value ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF414ERP 273344864 ENCODE Processing Pipeline ba94d9a2db86a1fb88e1324d80603985 https://www.encodeproject.org/files/ENCFF444BMY/@@download/ENCFF444BMY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF330QUE bigWig fold change over control ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF693CWR 237659448 ENCODE Processing Pipeline 5b5d5f855dfd665b2bb4019e7b2bc4bc https://www.encodeproject.org/files/ENCFF330QUE/@@download/ENCFF330QUE.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF071CFH bigWig signal p-value ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF414ERP, ENCFF693CWR 432483076 ENCODE Processing Pipeline 0c444cd8a58992f4ddee7983417df215 https://www.encodeproject.org/files/ENCFF071CFH/@@download/ENCFF071CFH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF900TBJ bed narrowPeak replicated peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF055WIO, ENCFF736MPD, ENCFF862EKP 3361996 ENCODE Processing Pipeline c0e38d7875a4f3534af671dbef6e7ec8 https://www.encodeproject.org/files/ENCFF900TBJ/@@download/ENCFF900TBJ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF422BZF bigWig fold change over control ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF414ERP 211088940 ENCODE Processing Pipeline 898ccea99197670e3b9d0ddba00e8d8e https://www.encodeproject.org/files/ENCFF422BZF/@@download/ENCFF422BZF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF827AKI bigWig fold change over control ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF414ERP, ENCFF693CWR 384188532 ENCODE Processing Pipeline 6a2f6ff8e27d7d1907294f8de467c89b https://www.encodeproject.org/files/ENCFF827AKI/@@download/ENCFF827AKI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF168UEH bigBed narrowPeak replicated peaks ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF900TBJ 7039133 ENCODE Processing Pipeline 05fed25c9cc4d501c14de49bdc4c8d20 https://www.encodeproject.org/files/ENCFF168UEH/@@download/ENCFF168UEH.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002ETV fastq reads ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 50 single-ended 2166868814 Bing Ren, UCSD bd14bb81b6503748d549ee9030c1a8d4 SRA:SRR3652428 https://www.encodeproject.org/files/ENCFF002ETV/@@download/ENCFF002ETV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXX/ released mild to moderate bottlenecking, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF002ETW fastq reads ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 50 single-ended 2040289189 Bing Ren, UCSD 7dea1ef8916bec7c4f8b5ee565992ae9 SRA:SRR3652427 https://www.encodeproject.org/files/ENCFF002ETW/@@download/ENCFF002ETW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXZ/ released mild to moderate bottlenecking, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF717WPD bam alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETW, ENCFF806TVZ 1576777930 ENCODE Processing Pipeline 8f9e0543d60a24f0037b86f8d7dcb691 https://www.encodeproject.org/files/ENCFF717WPD/@@download/ENCFF717WPD.bam mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF566SVR bam alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETV, ENCFF806TVZ 1575734307 ENCODE Processing Pipeline e6584cf867f8cf145dc577789a9aadba https://www.encodeproject.org/files/ENCFF566SVR/@@download/ENCFF566SVR.bam mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF385RIN bigBed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF653ENH 4313939 ENCODE Processing Pipeline 2aa177ea5f18f819dfc694a00ba9043d https://www.encodeproject.org/files/ENCFF385RIN/@@download/ENCFF385RIN.bigBed mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF688NZC bed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF566SVR, ENCFF717WPD 1438211 ENCODE Processing Pipeline 20dea92cdd932697ccb7a4bc4d2b01ba https://www.encodeproject.org/files/ENCFF688NZC/@@download/ENCFF688NZC.bed.gz mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF653ENH bed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF566SVR 1820329 ENCODE Processing Pipeline 46da6eb5e8d787ad802c9e0a49b10709 https://www.encodeproject.org/files/ENCFF653ENH/@@download/ENCFF653ENH.bed.gz mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF572WVR bigBed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF638YDT 4237757 ENCODE Processing Pipeline 3fb2a8a9601a276db262d68a7c6b3eec https://www.encodeproject.org/files/ENCFF572WVR/@@download/ENCFF572WVR.bigBed mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF638YDT bed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF717WPD 1721414 ENCODE Processing Pipeline 6c0d3329bc002e5ae54b75cf8177c260 https://www.encodeproject.org/files/ENCFF638YDT/@@download/ENCFF638YDT.bed.gz mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF461BTU bigBed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF688NZC 3397933 ENCODE Processing Pipeline 7ca15141994a77acdeca598ae82630cb https://www.encodeproject.org/files/ENCFF461BTU/@@download/ENCFF461BTU.bigBed mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF256BPR bigWig signal p-value ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF566SVR 505874854 ENCODE Processing Pipeline 497b99ea7c25716780ad3004b58b43d2 https://www.encodeproject.org/files/ENCFF256BPR/@@download/ENCFF256BPR.bigWig mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF723WOA bigWig signal p-value ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF717WPD 500870544 ENCODE Processing Pipeline f2e70bffb2499ee632057f47bebdc425 https://www.encodeproject.org/files/ENCFF723WOA/@@download/ENCFF723WOA.bigWig mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF807IJT bigWig signal p-value ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF566SVR, ENCFF717WPD 505522885 ENCODE Processing Pipeline 77455e6f30057814cbea73f02e3f338a https://www.encodeproject.org/files/ENCFF807IJT/@@download/ENCFF807IJT.bigWig mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF892MDB bigWig fold change over control ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF153BXF, ENCFF527LXR, ENCFF717WPD 501964354 ENCODE Processing Pipeline d6ed5f708a9e42334542967dff69c058 https://www.encodeproject.org/files/ENCFF892MDB/@@download/ENCFF892MDB.bigWig mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF073XZT bigWig fold change over control ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF153BXF, ENCFF527LXR, ENCFF566SVR 509480798 ENCODE Processing Pipeline a705b8f85d8a7dd2df21692bcd4fe7bb https://www.encodeproject.org/files/ENCFF073XZT/@@download/ENCFF073XZT.bigWig mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF652DSI bigWig fold change over control ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF153BXF, ENCFF527LXR, ENCFF566SVR, ENCFF717WPD 821119813 ENCODE Processing Pipeline 279b5f2a59808d09d1594d1666da4b81 https://www.encodeproject.org/files/ENCFF652DSI/@@download/ENCFF652DSI.bigWig mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF654OVR bigBed narrowPeak replicated peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF682KAJ 2943387 ENCODE Processing Pipeline 639476f93de0388f823095f1a7710793 https://www.encodeproject.org/files/ENCFF654OVR/@@download/ENCFF654OVR.bigBed mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF682KAJ bed narrowPeak replicated peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF638YDT, ENCFF653ENH, ENCFF688NZC 1553634 ENCODE Processing Pipeline 9ba5b8712e970435e7d47a68f83be505 https://www.encodeproject.org/files/ENCFF682KAJ/@@download/ENCFF682KAJ.bed.gz mm10-minimal archived mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF553UHK bam unfiltered alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETW, ENCFF018NEO 2020942508 ENCODE Processing Pipeline e7d8a6e3f3100c4643e85dea08b61a08 https://www.encodeproject.org/files/ENCFF553UHK/@@download/ENCFF553UHK.bam mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF323FYO bam unfiltered alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETV, ENCFF018NEO 2124579339 ENCODE Processing Pipeline 28b35aa629e7b971197cb8cb3c69cecb https://www.encodeproject.org/files/ENCFF323FYO/@@download/ENCFF323FYO.bam mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF148MFU bam alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETV, ENCFF018NEO 1166188485 ENCODE Processing Pipeline 6c5738e0f4d1ccd29198bd717a25d786 https://www.encodeproject.org/files/ENCFF148MFU/@@download/ENCFF148MFU.bam mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF483SIL bam alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETW, ENCFF018NEO 1161838354 ENCODE Processing Pipeline 810bca8b0806e984de098c6388d0331a https://www.encodeproject.org/files/ENCFF483SIL/@@download/ENCFF483SIL.bam mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF498IGP bed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF148MFU, ENCFF426BAZ 1744536 ENCODE Processing Pipeline fc7d042c5bf5dcf65b7cc33a7de95045 https://www.encodeproject.org/files/ENCFF498IGP/@@download/ENCFF498IGP.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF532RWF bed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF483SIL 1541265 ENCODE Processing Pipeline 9dc74aa7a1977108970d35065522d4ba https://www.encodeproject.org/files/ENCFF532RWF/@@download/ENCFF532RWF.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF948BXT bed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF148MFU, ENCFF426BAZ, ENCFF483SIL 1479890 ENCODE Processing Pipeline 27513ff47eb51d4aa8d6a7b1e8b6fa40 https://www.encodeproject.org/files/ENCFF948BXT/@@download/ENCFF948BXT.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF835GGO bigBed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF498IGP 4173104 ENCODE Processing Pipeline edbfee54979a236d639cdb3a4d3a7315 https://www.encodeproject.org/files/ENCFF835GGO/@@download/ENCFF835GGO.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF583SXM bigBed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF948BXT 3509091 ENCODE Processing Pipeline f980e6d6bfbbf236d9144a548fae5ae6 https://www.encodeproject.org/files/ENCFF583SXM/@@download/ENCFF583SXM.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF609KWP bigBed narrowPeak peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF532RWF 3867921 ENCODE Processing Pipeline 89b132782d54deea93d5ef122f43d840 https://www.encodeproject.org/files/ENCFF609KWP/@@download/ENCFF609KWP.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF989MZV bigWig signal p-value ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF148MFU, ENCFF426BAZ 482615727 ENCODE Processing Pipeline 60616c23978a33dd8712c2092fdf4399 https://www.encodeproject.org/files/ENCFF989MZV/@@download/ENCFF989MZV.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF107JEI bigWig signal p-value ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF483SIL 476128144 ENCODE Processing Pipeline 9a18c74e46e12fceb3b772b18b9ab37c https://www.encodeproject.org/files/ENCFF107JEI/@@download/ENCFF107JEI.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF033YGT bigWig signal p-value ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF148MFU, ENCFF426BAZ, ENCFF483SIL 495425152 ENCODE Processing Pipeline 776f443918550de28354d567d270283d https://www.encodeproject.org/files/ENCFF033YGT/@@download/ENCFF033YGT.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF181VRZ bigWig fold change over control ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF095LNY, ENCFF148MFU, ENCFF426BAZ 475806753 ENCODE Processing Pipeline a3265b4de44d867765258995faca72d7 https://www.encodeproject.org/files/ENCFF181VRZ/@@download/ENCFF181VRZ.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF108MLR bigWig fold change over control ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF095LNY, ENCFF426BAZ, ENCFF483SIL 471575684 ENCODE Processing Pipeline b1bee86f7719b95c4ad17621996d05f2 https://www.encodeproject.org/files/ENCFF108MLR/@@download/ENCFF108MLR.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF702EWM bigWig fold change over control ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF095LNY, ENCFF148MFU, ENCFF426BAZ, ENCFF483SIL 766564788 ENCODE Processing Pipeline cca950b6005d81ab5bc0fc6a4d07fcba https://www.encodeproject.org/files/ENCFF702EWM/@@download/ENCFF702EWM.bigWig mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF966IMK bed narrowPeak replicated peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF498IGP, ENCFF532RWF, ENCFF948BXT 1421980 ENCODE Processing Pipeline 5cd4700cd5e16c72c0efa217673e0e91 https://www.encodeproject.org/files/ENCFF966IMK/@@download/ENCFF966IMK.bed.gz mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF902FHE bigBed narrowPeak replicated peaks ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF966IMK 2714818 ENCODE Processing Pipeline 5dbb85238af44955bd746ad4ca353c30 https://www.encodeproject.org/files/ENCFF902FHE/@@download/ENCFF902FHE.bigBed mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF002AKE fastq reads ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1413255134 Bing Ren, UCSD 4648949ec9849f52d703f381b866c2af SRA:SRR3651806 https://www.encodeproject.org/files/ENCFF002AKE/@@download/ENCFF002AKE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQW/ released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF002AKH fastq reads ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2317774838 Bing Ren, UCSD de863787e5c78ab6ef0b316d01577076 SRA:SRR3651808 https://www.encodeproject.org/files/ENCFF002AKH/@@download/ENCFF002AKH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARB/ released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF269HRF bam alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKH, ENCFF806TVZ 1803835466 ENCODE Processing Pipeline f1009fda5340aad034b9089b84b38631 https://www.encodeproject.org/files/ENCFF269HRF/@@download/ENCFF269HRF.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF507KWH fastq reads ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 764681028 Bing Ren, UCSD 5703023ceee0fbbf8949a6390496e1fe SRA:SRR3651807 https://www.encodeproject.org/files/ENCFF507KWH/@@download/ENCFF507KWH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQW/ released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF423WMP bam alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKE, ENCFF507KWH, ENCFF806TVZ 1694314277 ENCODE Processing Pipeline 4d348c603a225b0ede7ff44b64a7189d https://www.encodeproject.org/files/ENCFF423WMP/@@download/ENCFF423WMP.bam mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF527RIN bed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF269HRF, ENCFF423WMP, ENCFF819FNM 2254553 ENCODE Processing Pipeline 6a2ddd644760225a9f7cb31756d8a32b https://www.encodeproject.org/files/ENCFF527RIN/@@download/ENCFF527RIN.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF627RVI bigBed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF527RIN 5877670 ENCODE Processing Pipeline 732baaf4ce2310646a62bc3e6c271cbe https://www.encodeproject.org/files/ENCFF627RVI/@@download/ENCFF627RVI.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF049PFF bigWig signal p-value ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF423WMP, ENCFF819FNM 539104638 ENCODE Processing Pipeline d6d7d1c870e8383bb85cb42e526ea4bd https://www.encodeproject.org/files/ENCFF049PFF/@@download/ENCFF049PFF.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF266ZQH bigBed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF520OYQ 5302001 ENCODE Processing Pipeline 3884c64547d573ea49f804253ea43afe https://www.encodeproject.org/files/ENCFF266ZQH/@@download/ENCFF266ZQH.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF135JKJ bigWig signal p-value ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF269HRF, ENCFF819FNM 435156044 ENCODE Processing Pipeline 12192f76e07f534ea9874f0e13756fdc https://www.encodeproject.org/files/ENCFF135JKJ/@@download/ENCFF135JKJ.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF834AVC bigWig signal p-value ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF269HRF, ENCFF423WMP, ENCFF819FNM 661605452 ENCODE Processing Pipeline 3f4d1c2009b1f3aff1c7f03e58629e62 https://www.encodeproject.org/files/ENCFF834AVC/@@download/ENCFF834AVC.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF520OYQ bed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF269HRF, ENCFF819FNM 2644985 ENCODE Processing Pipeline 0cc36b6c965a5a1ca691c55ebdaa5a67 https://www.encodeproject.org/files/ENCFF520OYQ/@@download/ENCFF520OYQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF891QCY bed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF423WMP, ENCFF819FNM 2460357 ENCODE Processing Pipeline 16f0ec79f3c47a8a446da070fc4ad74c https://www.encodeproject.org/files/ENCFF891QCY/@@download/ENCFF891QCY.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF346PZW bigBed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF891QCY 5001178 ENCODE Processing Pipeline 4860a6bf29255e49d2ecafbd3c335587 https://www.encodeproject.org/files/ENCFF346PZW/@@download/ENCFF346PZW.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF837XUH bigWig fold change over control ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF269HRF, ENCFF819FNM 573645870 ENCODE Processing Pipeline f3ea09bc32a0db1e988d4ef0db684afc https://www.encodeproject.org/files/ENCFF837XUH/@@download/ENCFF837XUH.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF056JCE bigWig fold change over control ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF269HRF, ENCFF423WMP, ENCFF819FNM 899492409 ENCODE Processing Pipeline 8ade494f45d6e618cc853712ca667ba1 https://www.encodeproject.org/files/ENCFF056JCE/@@download/ENCFF056JCE.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF654PKK bigBed narrowPeak replicated peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF284PFB 4644898 ENCODE Processing Pipeline 51705e7c16d4fb812f132b6832b6eea3 https://www.encodeproject.org/files/ENCFF654PKK/@@download/ENCFF654PKK.bigBed mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF423SDU bigWig fold change over control ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF423WMP, ENCFF819FNM 543700955 ENCODE Processing Pipeline e3324bd707d511452ca97a60516d53a7 https://www.encodeproject.org/files/ENCFF423SDU/@@download/ENCFF423SDU.bigWig mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF284PFB bed narrowPeak replicated peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF520OYQ, ENCFF527RIN, ENCFF891QCY 2146255 ENCODE Processing Pipeline 986c4558f6e8bfb3ec726a11e884e60c https://www.encodeproject.org/files/ENCFF284PFB/@@download/ENCFF284PFB.bed.gz mm10-minimal archived mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF036SXL bam unfiltered alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKE, ENCFF018NEO, ENCFF507KWH 2509778519 ENCODE Processing Pipeline 1a26d49789254340c2c6274eae4c59ac https://www.encodeproject.org/files/ENCFF036SXL/@@download/ENCFF036SXL.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF245COH bam alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKE, ENCFF018NEO, ENCFF507KWH 1693911308 ENCODE Processing Pipeline 4c3e923b206e85b12a780f07cd8b735f https://www.encodeproject.org/files/ENCFF245COH/@@download/ENCFF245COH.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF148VEH bam unfiltered alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKH, ENCFF018NEO 2482250412 ENCODE Processing Pipeline 5baa7316d452989861f0ff4a50b9a396 https://www.encodeproject.org/files/ENCFF148VEH/@@download/ENCFF148VEH.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF372BXH bam alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKH, ENCFF018NEO 1803403747 ENCODE Processing Pipeline 16eec20abc57c06768178aded29a3432 https://www.encodeproject.org/files/ENCFF372BXH/@@download/ENCFF372BXH.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF257XIF bed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF245COH, ENCFF472HVK, ENCFF815EAE 2460882 ENCODE Processing Pipeline 4debeb076441a174bcd3c7f67a95bc9a https://www.encodeproject.org/files/ENCFF257XIF/@@download/ENCFF257XIF.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF068GMB bed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF372BXH, ENCFF472HVK, ENCFF815EAE 2634899 ENCODE Processing Pipeline f4117aa9c0a938afdfc0009e2760dbb3 https://www.encodeproject.org/files/ENCFF068GMB/@@download/ENCFF068GMB.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF646PAM bed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF245COH, ENCFF372BXH, ENCFF472HVK, ENCFF815EAE 2256111 ENCODE Processing Pipeline 24be062f2663e3ab7a246c506e522d54 https://www.encodeproject.org/files/ENCFF646PAM/@@download/ENCFF646PAM.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF481EYI bigBed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF257XIF 5002528 ENCODE Processing Pipeline d445e568ff965fdb7e50c4afee78eda1 https://www.encodeproject.org/files/ENCFF481EYI/@@download/ENCFF481EYI.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF331RNI bigBed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF068GMB 5312187 ENCODE Processing Pipeline 0d6b043ee1b44918c24da524a08a9865 https://www.encodeproject.org/files/ENCFF331RNI/@@download/ENCFF331RNI.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF666MTL bigBed narrowPeak peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF646PAM 5862551 ENCODE Processing Pipeline 4cf56fd6afdd062ec909d22c86e40ee1 https://www.encodeproject.org/files/ENCFF666MTL/@@download/ENCFF666MTL.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF924KLY bigWig signal p-value ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF372BXH, ENCFF472HVK, ENCFF815EAE 497171341 ENCODE Processing Pipeline 0705680e31efbb07190e424add4f03b1 https://www.encodeproject.org/files/ENCFF924KLY/@@download/ENCFF924KLY.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF803HYX bigWig signal p-value ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF245COH, ENCFF472HVK, ENCFF815EAE 547106259 ENCODE Processing Pipeline f3642f6acd41ae8f4a25489e2f26a7c0 https://www.encodeproject.org/files/ENCFF803HYX/@@download/ENCFF803HYX.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF182IJL bigWig signal p-value ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF245COH, ENCFF372BXH, ENCFF472HVK, ENCFF815EAE 661034015 ENCODE Processing Pipeline 3fba653f19572afdfc68416ad479c933 https://www.encodeproject.org/files/ENCFF182IJL/@@download/ENCFF182IJL.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF488LKE bigWig fold change over control ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF372BXH, ENCFF472HVK, ENCFF815EAE 574729170 ENCODE Processing Pipeline 32babb14afb5ec43760bf617719bd123 https://www.encodeproject.org/files/ENCFF488LKE/@@download/ENCFF488LKE.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF665HMB bigWig fold change over control ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF245COH, ENCFF472HVK, ENCFF815EAE 543695233 ENCODE Processing Pipeline d9ee8b15a1ea7debb48de239d74a7485 https://www.encodeproject.org/files/ENCFF665HMB/@@download/ENCFF665HMB.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF323FCP bigWig fold change over control ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF245COH, ENCFF372BXH, ENCFF472HVK, ENCFF815EAE 897863735 ENCODE Processing Pipeline f3478a988300cd71e32bfb511c0fa8de https://www.encodeproject.org/files/ENCFF323FCP/@@download/ENCFF323FCP.bigWig mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF165ZKL bed narrowPeak replicated peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF068GMB, ENCFF257XIF, ENCFF646PAM 2121552 ENCODE Processing Pipeline 710ce7d4145124801ee3ed662fe666bf https://www.encodeproject.org/files/ENCFF165ZKL/@@download/ENCFF165ZKL.bed.gz mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF969HOM bigBed narrowPeak replicated peaks ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF165ZKL 4616139 ENCODE Processing Pipeline de3a8a10181bf7dd6aea7f106c0f3638 https://www.encodeproject.org/files/ENCFF969HOM/@@download/ENCFF969HOM.bigBed mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF002AFF fastq reads ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2240301134 Bing Ren, UCSD aeaa6ec5c38cac24c572630f0d4fb6aa SRA:SRR3652144 https://www.encodeproject.org/files/ENCFF002AFF/@@download/ENCFF002AFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQI/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AFI fastq reads ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1714970692 Bing Ren, UCSD cc53c07507d8858198d3d2ff6525b0e9 SRA:SRR3652143 https://www.encodeproject.org/files/ENCFF002AFI/@@download/ENCFF002AFI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQJ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF042OJU bam alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFF, ENCFF806TVZ 1341559468 ENCODE Processing Pipeline a23f764e4158179efa145fda97ac5c46 https://www.encodeproject.org/files/ENCFF042OJU/@@download/ENCFF042OJU.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF112OZY bam alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFI, ENCFF806TVZ 1092302879 ENCODE Processing Pipeline 87dc25372eff34c7762ae902e6e1c3ed https://www.encodeproject.org/files/ENCFF112OZY/@@download/ENCFF112OZY.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF959NNE bed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF112OZY, ENCFF271DZZ, ENCFF991ANF 1151480 ENCODE Processing Pipeline b09162a5f3e53934c5c7968bd61573f2 https://www.encodeproject.org/files/ENCFF959NNE/@@download/ENCFF959NNE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF689LTO bed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF042OJU, ENCFF271DZZ, ENCFF991ANF 1700728 ENCODE Processing Pipeline eb99c0176d576800858e11cb21866b2b https://www.encodeproject.org/files/ENCFF689LTO/@@download/ENCFF689LTO.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF724MNA bed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF042OJU, ENCFF112OZY, ENCFF271DZZ, ENCFF991ANF 1438395 ENCODE Processing Pipeline 9e6b8c33ce8ac49c51f98603e4ff4cf2 https://www.encodeproject.org/files/ENCFF724MNA/@@download/ENCFF724MNA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF514WLF bigBed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF959NNE 2766239 ENCODE Processing Pipeline 0e7a248e9624950be5f5e7bdae15dad7 https://www.encodeproject.org/files/ENCFF514WLF/@@download/ENCFF514WLF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF634JBT bigBed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF724MNA 4121349 ENCODE Processing Pipeline c7498da36ae021c0ac5faaba975ac616 https://www.encodeproject.org/files/ENCFF634JBT/@@download/ENCFF634JBT.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF267SLV bigBed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF689LTO 4811302 ENCODE Processing Pipeline 6d252268722cc2c8733c04b9d742b551 https://www.encodeproject.org/files/ENCFF267SLV/@@download/ENCFF267SLV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF120JGE bigWig signal p-value ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF112OZY, ENCFF271DZZ, ENCFF991ANF 435673394 ENCODE Processing Pipeline b0db3a9aa50a6132edcba79e9be0afff https://www.encodeproject.org/files/ENCFF120JGE/@@download/ENCFF120JGE.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF856AES bigWig signal p-value ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF042OJU, ENCFF271DZZ, ENCFF991ANF 466725139 ENCODE Processing Pipeline e74c19e78031fd737e9687af5d655b57 https://www.encodeproject.org/files/ENCFF856AES/@@download/ENCFF856AES.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF635PMU bigWig signal p-value ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF042OJU, ENCFF112OZY, ENCFF271DZZ, ENCFF991ANF 745389881 ENCODE Processing Pipeline d486f66e0a73e80e4e0e8e82fad8f792 https://www.encodeproject.org/files/ENCFF635PMU/@@download/ENCFF635PMU.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF931NSE bigWig fold change over control ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF112OZY, ENCFF271DZZ, ENCFF991ANF 488263200 ENCODE Processing Pipeline 0c3199903e6239baabb1346e249cf327 https://www.encodeproject.org/files/ENCFF931NSE/@@download/ENCFF931NSE.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF983UUQ bigWig fold change over control ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF042OJU, ENCFF271DZZ, ENCFF991ANF 537239805 ENCODE Processing Pipeline cff663f343572dc454ffd44067df5ca0 https://www.encodeproject.org/files/ENCFF983UUQ/@@download/ENCFF983UUQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF837UIJ bigBed narrowPeak replicated peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF776XXR 2885702 ENCODE Processing Pipeline 2dd2f527f371f442e117efc6ae448502 https://www.encodeproject.org/files/ENCFF837UIJ/@@download/ENCFF837UIJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF776XXR bed narrowPeak replicated peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF689LTO, ENCFF724MNA, ENCFF959NNE 1247300 ENCODE Processing Pipeline 37031f9b8707d1a2eee600b2402d67aa https://www.encodeproject.org/files/ENCFF776XXR/@@download/ENCFF776XXR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF597PBZ bigWig fold change over control ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF042OJU, ENCFF112OZY, ENCFF271DZZ, ENCFF991ANF 801519624 ENCODE Processing Pipeline bb2fb380bce4f88359383c5d33aaea6b https://www.encodeproject.org/files/ENCFF597PBZ/@@download/ENCFF597PBZ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF627RON bam unfiltered alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFF, ENCFF018NEO 1874615941 ENCODE Processing Pipeline d95fd57af00fc33179cca074cb5868ff https://www.encodeproject.org/files/ENCFF627RON/@@download/ENCFF627RON.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF026GAM bam alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFI, ENCFF018NEO 842914073 ENCODE Processing Pipeline 889093535ed806026633e5547b28979e https://www.encodeproject.org/files/ENCFF026GAM/@@download/ENCFF026GAM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF728UJY bam unfiltered alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFI, ENCFF018NEO 1473843444 ENCODE Processing Pipeline f6768700f5679370fc18325551f56d44 https://www.encodeproject.org/files/ENCFF728UJY/@@download/ENCFF728UJY.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF410SCI bam alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFF, ENCFF018NEO 1044985544 ENCODE Processing Pipeline 7f0a9d2e32e448574b688875f1f43c41 https://www.encodeproject.org/files/ENCFF410SCI/@@download/ENCFF410SCI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF375OBR bed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF410SCI, ENCFF688CVA, ENCFF945UFA 1905993 ENCODE Processing Pipeline 1a24690cf5fb99c8e41f1e40691637b6 https://www.encodeproject.org/files/ENCFF375OBR/@@download/ENCFF375OBR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF558TPL bed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026GAM, ENCFF410SCI, ENCFF688CVA, ENCFF945UFA 1447731 ENCODE Processing Pipeline b1e7f4519f8404ae3b1953ee9d2d3b4a https://www.encodeproject.org/files/ENCFF558TPL/@@download/ENCFF558TPL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF303PJF bigBed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF880WWG 2712844 ENCODE Processing Pipeline b6752a3f7492e85ab9943c8499ec7cca https://www.encodeproject.org/files/ENCFF303PJF/@@download/ENCFF303PJF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF880WWG bed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026GAM, ENCFF688CVA, ENCFF945UFA 1126826 ENCODE Processing Pipeline 3e3cf805694a07e92f41ce7b41b21568 https://www.encodeproject.org/files/ENCFF880WWG/@@download/ENCFF880WWG.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF538FVG bigBed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF558TPL 4139352 ENCODE Processing Pipeline 33461856c354808a5569cabefa7a7957 https://www.encodeproject.org/files/ENCFF538FVG/@@download/ENCFF538FVG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF111MUL bigBed narrowPeak peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF375OBR 5338325 ENCODE Processing Pipeline b74fa3f20626878e48c6ded25100e2a9 https://www.encodeproject.org/files/ENCFF111MUL/@@download/ENCFF111MUL.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF397FBL bigWig signal p-value ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026GAM, ENCFF688CVA, ENCFF945UFA 459138543 ENCODE Processing Pipeline 29bb2636970fd8bda0ffe8b9bc8be459 https://www.encodeproject.org/files/ENCFF397FBL/@@download/ENCFF397FBL.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF854ZVE bigWig signal p-value ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026GAM, ENCFF410SCI, ENCFF688CVA, ENCFF945UFA 742843629 ENCODE Processing Pipeline bd4c806cd9d197d3919b1af2a6f65b4e https://www.encodeproject.org/files/ENCFF854ZVE/@@download/ENCFF854ZVE.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF752CKT bigWig signal p-value ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF410SCI, ENCFF688CVA, ENCFF945UFA 493322261 ENCODE Processing Pipeline e78581be7bc9b8ccf4c870dff67c18c4 https://www.encodeproject.org/files/ENCFF752CKT/@@download/ENCFF752CKT.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF815MKX bigWig fold change over control ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF026GAM, ENCFF688CVA, ENCFF945UFA 468677810 ENCODE Processing Pipeline f96b623cf2c4f9ccd9989984abdf593f https://www.encodeproject.org/files/ENCFF815MKX/@@download/ENCFF815MKX.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF600UIC bigWig fold change over control ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF410SCI, ENCFF688CVA, ENCFF945UFA 517246666 ENCODE Processing Pipeline 802265720ee69f7c9d726ba4dd3b2469 https://www.encodeproject.org/files/ENCFF600UIC/@@download/ENCFF600UIC.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF173XOV bigWig fold change over control ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026GAM, ENCFF410SCI, ENCFF688CVA, ENCFF945UFA 769504953 ENCODE Processing Pipeline af8f88d7100757de417a381aa4aafb33 https://www.encodeproject.org/files/ENCFF173XOV/@@download/ENCFF173XOV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF093QGY bed narrowPeak replicated peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF375OBR, ENCFF558TPL, ENCFF880WWG 1313396 ENCODE Processing Pipeline 173526d4feceafd57e4569b113aef595 https://www.encodeproject.org/files/ENCFF093QGY/@@download/ENCFF093QGY.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF717BVA bigBed narrowPeak replicated peaks ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF093QGY 3013198 ENCODE Processing Pipeline 4ae1708a0a6e88118981251331ee8fe4 https://www.encodeproject.org/files/ENCFF717BVA/@@download/ENCFF717BVA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002DRH fastq reads ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 36 single-ended 1946077611 Bing Ren, UCSD b666fd6009664f9aa33f034d0e89784f SRA:SRR3652021 https://www.encodeproject.org/files/ENCFF002DRH/@@download/ENCFF002DRH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQE/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRK fastq reads ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 36 single-ended 1789206450 Bing Ren, UCSD 1a4a600c45d93ccb43f42c13b0898348 SRA:SRR3652019 https://www.encodeproject.org/files/ENCFF002DRK/@@download/ENCFF002DRK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQC/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DRM fastq reads ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 2 36 single-ended 1258538395 Bing Ren, UCSD e457455c02084520f075eac79f1f4d96 SRA:SRR3652020 https://www.encodeproject.org/files/ENCFF002DRM/@@download/ENCFF002DRM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQC/ released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF418TUY bam alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF002DRK, ENCFF002DRM, ENCFF806TVZ 1328182371 ENCODE Processing Pipeline e6c2569c56248217198665791792f1ed https://www.encodeproject.org/files/ENCFF418TUY/@@download/ENCFF418TUY.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF088KWY bam alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF002DRH, ENCFF806TVZ 1022946963 ENCODE Processing Pipeline 0e6c4f00d6871b199382284f7217a4cd https://www.encodeproject.org/files/ENCFF088KWY/@@download/ENCFF088KWY.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF519PUS bed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF088KWY, ENCFF387UYW, ENCFF418TUY, ENCFF999TAG 581846 ENCODE Processing Pipeline c35074a7a01d40c3c2bb02f3a58a3c9a https://www.encodeproject.org/files/ENCFF519PUS/@@download/ENCFF519PUS.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF284PZH bed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF088KWY, ENCFF387UYW, ENCFF999TAG 529698 ENCODE Processing Pipeline e136d2fb1d5c05dad138c1bcdbfa1d26 https://www.encodeproject.org/files/ENCFF284PZH/@@download/ENCFF284PZH.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF726KQQ bed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF387UYW, ENCFF418TUY, ENCFF999TAG 1055204 ENCODE Processing Pipeline aab5d5b0b408bd417f408324b4b04e8b https://www.encodeproject.org/files/ENCFF726KQQ/@@download/ENCFF726KQQ.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF789VAJ bigBed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF284PZH 1027427 ENCODE Processing Pipeline 13fde975c9a27d0081e16d00e0b6da50 https://www.encodeproject.org/files/ENCFF789VAJ/@@download/ENCFF789VAJ.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF263DNQ bigBed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF519PUS 1346464 ENCODE Processing Pipeline 7b7681ae2277d254c1bc063b33a7b621 https://www.encodeproject.org/files/ENCFF263DNQ/@@download/ENCFF263DNQ.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF819MQP bigBed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF726KQQ 2237582 ENCODE Processing Pipeline 0e2ce95ac4c9622c3bf0ec994c38da49 https://www.encodeproject.org/files/ENCFF819MQP/@@download/ENCFF819MQP.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF192RDB bigWig signal p-value ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF088KWY, ENCFF387UYW, ENCFF999TAG 486274379 ENCODE Processing Pipeline 9b47a10f215dfb3ddd9fc8c3ad44decc https://www.encodeproject.org/files/ENCFF192RDB/@@download/ENCFF192RDB.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF360POJ bigWig signal p-value ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF387UYW, ENCFF418TUY, ENCFF999TAG 570523773 ENCODE Processing Pipeline 3f82eb3e403dfe5dd8a6c93c2cfa27f6 https://www.encodeproject.org/files/ENCFF360POJ/@@download/ENCFF360POJ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF461OSF bigWig signal p-value ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF088KWY, ENCFF387UYW, ENCFF418TUY, ENCFF999TAG 654918773 ENCODE Processing Pipeline 5eac22bc7b11028ead24c220abf45535 https://www.encodeproject.org/files/ENCFF461OSF/@@download/ENCFF461OSF.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF068BDK bigWig fold change over control ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF088KWY, ENCFF387UYW, ENCFF999TAG 468111622 ENCODE Processing Pipeline 98506be95f64c150ca0ecf6c2c2c416d https://www.encodeproject.org/files/ENCFF068BDK/@@download/ENCFF068BDK.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF790SQK bigWig fold change over control ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF387UYW, ENCFF418TUY, ENCFF999TAG 565125588 ENCODE Processing Pipeline 1ca35e4fa2b98d8028fc68e7d042403a https://www.encodeproject.org/files/ENCFF790SQK/@@download/ENCFF790SQK.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF980XLY bigWig fold change over control ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF088KWY, ENCFF387UYW, ENCFF418TUY, ENCFF999TAG 814497294 ENCODE Processing Pipeline f74dce31b40a0f50761f1364e5600f94 https://www.encodeproject.org/files/ENCFF980XLY/@@download/ENCFF980XLY.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF265TAN bigBed narrowPeak replicated peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF079IEN 753043 ENCODE Processing Pipeline 0c23542017e8a705d4bd5943709a4749 https://www.encodeproject.org/files/ENCFF265TAN/@@download/ENCFF265TAN.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF079IEN bed narrowPeak replicated peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF284PZH, ENCFF519PUS, ENCFF726KQQ 317450 ENCODE Processing Pipeline e2d1181f398bb0874b6b3eeb962a9ee0 https://www.encodeproject.org/files/ENCFF079IEN/@@download/ENCFF079IEN.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF405IQV bam unfiltered alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DRH, ENCFF018NEO 2420366493 ENCODE Processing Pipeline c3840044667d195184f73957a98e61c9 https://www.encodeproject.org/files/ENCFF405IQV/@@download/ENCFF405IQV.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF348OQQ bam unfiltered alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DRK, ENCFF002DRM, ENCFF018NEO 3752057731 ENCODE Processing Pipeline 7cb761955361606118c4bd1217b2eca9 https://www.encodeproject.org/files/ENCFF348OQQ/@@download/ENCFF348OQQ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF876SAR bam alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DRH, ENCFF018NEO 1022209981 ENCODE Processing Pipeline 98b5dbdd0b6122af95d91f498bd54f5f https://www.encodeproject.org/files/ENCFF876SAR/@@download/ENCFF876SAR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF709VTI bam alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DRK, ENCFF002DRM, ENCFF018NEO 1327471116 ENCODE Processing Pipeline 4575f8d849b5b2abd92ff9541906da09 https://www.encodeproject.org/files/ENCFF709VTI/@@download/ENCFF709VTI.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF935VFR bigBed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF738XTD 992122 ENCODE Processing Pipeline d6651598fbc46bc78ead1523b27596a2 https://www.encodeproject.org/files/ENCFF935VFR/@@download/ENCFF935VFR.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF668PDG bigBed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF203WDD 1037178 ENCODE Processing Pipeline c3b94a867c443d6ec1157912d4e55684 https://www.encodeproject.org/files/ENCFF668PDG/@@download/ENCFF668PDG.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF805NAD bigBed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF186IBS 1710743 ENCODE Processing Pipeline 1a974093820a898115a5b2bb26b6788e https://www.encodeproject.org/files/ENCFF805NAD/@@download/ENCFF805NAD.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF203WDD bed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF876SAR 536356 ENCODE Processing Pipeline f71013765fce33aea4300507a3f4f1f2 https://www.encodeproject.org/files/ENCFF203WDD/@@download/ENCFF203WDD.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF738XTD bed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF032AWP, ENCFF446WFN, ENCFF709VTI, ENCFF876SAR 401854 ENCODE Processing Pipeline 3658e31f1eb0de4fbe48001a971486b2 https://www.encodeproject.org/files/ENCFF738XTD/@@download/ENCFF738XTD.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF186IBS bed narrowPeak peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF709VTI 765416 ENCODE Processing Pipeline e84b1c0f4cfa4ddc0a640e51de79b1e7 https://www.encodeproject.org/files/ENCFF186IBS/@@download/ENCFF186IBS.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF072PPW bigWig signal p-value ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF876SAR 400857746 ENCODE Processing Pipeline 0009ddbfbb306ab3eed3d56f842b5370 https://www.encodeproject.org/files/ENCFF072PPW/@@download/ENCFF072PPW.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF957RNJ bigWig signal p-value ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF709VTI 501753931 ENCODE Processing Pipeline c2d369fae561a08e3652d28579e03ca2 https://www.encodeproject.org/files/ENCFF957RNJ/@@download/ENCFF957RNJ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF308BWC bigWig signal p-value ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF032AWP, ENCFF446WFN, ENCFF709VTI, ENCFF876SAR 630950409 ENCODE Processing Pipeline a737d0ead55cd311dcc8eea92d04b319 https://www.encodeproject.org/files/ENCFF308BWC/@@download/ENCFF308BWC.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF850WRL bigWig fold change over control ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF876SAR 464405965 ENCODE Processing Pipeline 131ff7abc04a0cd6505b5815f6324e27 https://www.encodeproject.org/files/ENCFF850WRL/@@download/ENCFF850WRL.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF044QKH bigWig fold change over control ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF709VTI 555608593 ENCODE Processing Pipeline c7022ec53ebd7685b48fc9402e1d1782 https://www.encodeproject.org/files/ENCFF044QKH/@@download/ENCFF044QKH.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF433RSJ bigWig fold change over control ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF032AWP, ENCFF446WFN, ENCFF709VTI, ENCFF876SAR 804305337 ENCODE Processing Pipeline 3f5bba5aa4105010247b002ab586f7d9 https://www.encodeproject.org/files/ENCFF433RSJ/@@download/ENCFF433RSJ.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF843OFS bigBed narrowPeak replicated peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF041VPJ 705660 ENCODE Processing Pipeline 34eae7ef78d674cc57cd5bc5abc74197 https://www.encodeproject.org/files/ENCFF843OFS/@@download/ENCFF843OFS.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF041VPJ bed narrowPeak replicated peaks ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF186IBS, ENCFF203WDD, ENCFF738XTD 290909 ENCODE Processing Pipeline a298fe56c6aa1ca5408db7503960c28b https://www.encodeproject.org/files/ENCFF041VPJ/@@download/ENCFF041VPJ.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF001JYJ bam alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JYS 433415548 Bing Ren, UCSD 724233175c2cf8babde325390138a406 https://www.encodeproject.org/files/ENCFF001JYJ/@@download/ENCFF001JYJ.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001JYK bam alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JYY 494466096 Bing Ren, UCSD 9943f09306ec0202d22125763ab9020e https://www.encodeproject.org/files/ENCFF001JYK/@@download/ENCFF001JYK.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001JYL bigBed broadPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE ENCFF001XVY 389683 Bing Ren, UCSD ab440a603b7fcdca46fdf0d41ab35060 https://www.encodeproject.org/files/ENCFF001JYL/@@download/ENCFF001JYL.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001JYO bigWig signal ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 15454867 Bing Ren, UCSD fde2596e0947f1a7eee796b575057781 https://www.encodeproject.org/files/ENCFF001JYO/@@download/ENCFF001JYO.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF001JYS fastq reads ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 472565022 Bing Ren, UCSD 98e8484336b69bd3c06f1f5e7988add3 https://www.encodeproject.org/files/ENCFF001JYS/@@download/ENCFF001JYS.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZL/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length insufficient read depth ENCFF001JYY fastq reads ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 522466743 Bing Ren, UCSD a209307417bd3add4ff310ae4b44af9e https://www.encodeproject.org/files/ENCFF001JYY/@@download/ENCFF001JYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZE/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001XVY bed broadPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 271809 Bing Ren, UCSD 19aa021df28f647e2fb4e7d88e95309b https://www.encodeproject.org/files/ENCFF001XVY/@@download/ENCFF001XVY.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF186UID bam alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JYY, ENCFF018NEO 361828436 ENCODE Processing Pipeline 7cb7253510be13fb9a781ac593413b0f https://www.encodeproject.org/files/ENCFF186UID/@@download/ENCFF186UID.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF305WJI bam alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JYS, ENCFF018NEO 283375498 ENCODE Processing Pipeline 5d970a1c326b28f84ba003dd97814733 https://www.encodeproject.org/files/ENCFF305WJI/@@download/ENCFF305WJI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF644CPL bed narrowPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF186UID, ENCFF305WJI, ENCFF380RIM, ENCFF436OKP 854230 ENCODE Processing Pipeline 4e176f30b1200948648ffbcc796ca8e2 https://www.encodeproject.org/files/ENCFF644CPL/@@download/ENCFF644CPL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF952PKR bigBed narrowPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF576ZBS 2379751 ENCODE Processing Pipeline 2b42e44cf5f74a21c00b29d3c75ba695 https://www.encodeproject.org/files/ENCFF952PKR/@@download/ENCFF952PKR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF537NZF bigBed narrowPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF644CPL 2404581 ENCODE Processing Pipeline 648289a075f733042018c3488d10ce06 https://www.encodeproject.org/files/ENCFF537NZF/@@download/ENCFF537NZF.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF793DMY bigWig signal p-value ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF186UID, ENCFF380RIM, ENCFF436OKP 301482221 ENCODE Processing Pipeline ff8ed342cb4d57ce824506a23e4807d3 https://www.encodeproject.org/files/ENCFF793DMY/@@download/ENCFF793DMY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF838DUE bigWig fold change over control ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF186UID, ENCFF380RIM, ENCFF436OKP 127513250 ENCODE Processing Pipeline 40888e9635798f13607f74ef750fced0 https://www.encodeproject.org/files/ENCFF838DUE/@@download/ENCFF838DUE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF186XGM bigWig fold change over control ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF186UID, ENCFF305WJI, ENCFF380RIM, ENCFF436OKP 180367903 ENCODE Processing Pipeline 9c26b5464cf5e66c46e9e37c60be3b6a https://www.encodeproject.org/files/ENCFF186XGM/@@download/ENCFF186XGM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF096IZX bed narrowPeak replicated peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF552KAP, ENCFF576ZBS, ENCFF644CPL 983567 ENCODE Processing Pipeline 2fe038ed12681ed4a45ca89949c1a3ec https://www.encodeproject.org/files/ENCFF096IZX/@@download/ENCFF096IZX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF552KAP bed narrowPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF305WJI, ENCFF380RIM, ENCFF436OKP 758861 ENCODE Processing Pipeline 08ea8dd11c3740132f085f6e821c73fb https://www.encodeproject.org/files/ENCFF552KAP/@@download/ENCFF552KAP.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF029EVX bigWig signal p-value ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF305WJI, ENCFF380RIM, ENCFF436OKP 327943993 ENCODE Processing Pipeline b27b68abf839e77b154be0d39337c755 https://www.encodeproject.org/files/ENCFF029EVX/@@download/ENCFF029EVX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF075DFF bigWig fold change over control ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF305WJI, ENCFF380RIM, ENCFF436OKP 101767543 ENCODE Processing Pipeline 5b039168acc671a3a9c8219126e63c2a https://www.encodeproject.org/files/ENCFF075DFF/@@download/ENCFF075DFF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF576ZBS bed narrowPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF186UID, ENCFF380RIM, ENCFF436OKP 814320 ENCODE Processing Pipeline 858ae67fdcd062c0bdbecaab090f13a9 https://www.encodeproject.org/files/ENCFF576ZBS/@@download/ENCFF576ZBS.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF865XJM bigBed narrowPeak peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF552KAP 2225278 ENCODE Processing Pipeline f86aadf45f7ccd62a2904d87fe1a3f85 https://www.encodeproject.org/files/ENCFF865XJM/@@download/ENCFF865XJM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF200UDF bigWig signal p-value ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF186UID, ENCFF305WJI, ENCFF380RIM, ENCFF436OKP 362670800 ENCODE Processing Pipeline 6d161b0d5c6ab3e0374e3a8ef21337b2 https://www.encodeproject.org/files/ENCFF200UDF/@@download/ENCFF200UDF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF352NOQ bigBed narrowPeak replicated peaks ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF096IZX 2059868 ENCODE Processing Pipeline 687f40c99cbae62f5c45f0ad9659edc2 https://www.encodeproject.org/files/ENCFF352NOQ/@@download/ENCFF352NOQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF207HIH bam unfiltered alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JYS, ENCFF018NEO 438179425 ENCODE Processing Pipeline 67fb285f13dc8ca8e14a13aa3c5f8254 https://www.encodeproject.org/files/ENCFF207HIH/@@download/ENCFF207HIH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF769KGX bam unfiltered alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JYY, ENCFF018NEO 504339954 ENCODE Processing Pipeline 2839f971b521f5dbe0233dbb509f4b36 https://www.encodeproject.org/files/ENCFF769KGX/@@download/ENCFF769KGX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF001NPH bigBed narrowPeak peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJB 248540 Michael Snyder, Stanford d095ab6112d5cd91d1c65d545231ccda https://www.encodeproject.org/files/ENCFF001NPH/@@download/ENCFF001NPH.bigBed mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NPI bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NPW 476333552 Michael Snyder, Stanford 3f2f927f51b4f2010e667d3ba4dab449 https://www.encodeproject.org/files/ENCFF001NPI/@@download/ENCFF001NPI.bam mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NPJ bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NPS 508907437 Michael Snyder, Stanford aec0416b263b554b45c7414970a243af https://www.encodeproject.org/files/ENCFF001NPJ/@@download/ENCFF001NPJ.bam mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NPK bigWig signal ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPI, ENCFF001NPJ 366950244 Michael Snyder, Stanford d4f4f3a5d70e43688a155ddb8e9dd9bf https://www.encodeproject.org/files/ENCFF001NPK/@@download/ENCFF001NPK.bigWig mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NPS fastq reads ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1034673954 Michael Snyder, Stanford 065bb6d26105b9936ac026c8d18eeb3a https://www.encodeproject.org/files/ENCFF001NPS/@@download/ENCFF001NPS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NPW fastq reads ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1357566493 Michael Snyder, Stanford c0bc929e063529f94521abe9dd9ef229 https://www.encodeproject.org/files/ENCFF001NPW/@@download/ENCFF001NPW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001YJB bed narrowPeak peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NPI, ENCFF001NPJ 84739 Michael Snyder, Stanford 256e4056612e520746d48c9a638dd683 https://www.encodeproject.org/files/ENCFF001YJB/@@download/ENCFF001YJB.bed.gz mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF871RBV bam unfiltered alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NPS, ENCFF018NEO 1241539735 ENCODE Processing Pipeline d3d3c3c673bfbf2350534c50b8448ba9 https://www.encodeproject.org/files/ENCFF871RBV/@@download/ENCFF871RBV.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF127VLJ bam unfiltered alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NPW, ENCFF018NEO 1577588902 ENCODE Processing Pipeline 422e831cdee92f0089f73f5f677fdf1b https://www.encodeproject.org/files/ENCFF127VLJ/@@download/ENCFF127VLJ.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF993AWK bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NPS, ENCFF018NEO 815286351 ENCODE Processing Pipeline 970892e3a06b6d25295289e3ee7c4cf3 https://www.encodeproject.org/files/ENCFF993AWK/@@download/ENCFF993AWK.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF329RLT bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NPW, ENCFF018NEO 942812396 ENCODE Processing Pipeline 2f4ce88ee59d3c9c6549bbacb85980c8 https://www.encodeproject.org/files/ENCFF329RLT/@@download/ENCFF329RLT.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF285LFP bigWig signal p-value ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF329RLT, ENCFF993AWK 300541936 ENCODE Processing Pipeline 906a6ecd1939a2597361782366e93fbc https://www.encodeproject.org/files/ENCFF285LFP/@@download/ENCFF285LFP.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF875LMA bigWig fold change over control ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF993AWK 341074776 ENCODE Processing Pipeline 9a7210498e93fc734eaae7e429fe4c26 https://www.encodeproject.org/files/ENCFF875LMA/@@download/ENCFF875LMA.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF574WAP bed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF329RLT 2601581 ENCODE Processing Pipeline 27ed251399abb23bd3f1623e6b60c367 https://www.encodeproject.org/files/ENCFF574WAP/@@download/ENCFF574WAP.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF195DQW bigWig signal p-value ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF993AWK 295273070 ENCODE Processing Pipeline b4de2677c58936b086bbfcaa05c44d37 https://www.encodeproject.org/files/ENCFF195DQW/@@download/ENCFF195DQW.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF485PYX bigWig signal p-value ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF329RLT 306053465 ENCODE Processing Pipeline 36cdba1d598c4e41cbd0228c9fc68a1c https://www.encodeproject.org/files/ENCFF485PYX/@@download/ENCFF485PYX.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF799XHX bigWig fold change over control ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF329RLT 347291429 ENCODE Processing Pipeline 757192d1f2ccd3d8ab1148f50258ac6e https://www.encodeproject.org/files/ENCFF799XHX/@@download/ENCFF799XHX.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF623ITO bigWig fold change over control ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF329RLT, ENCFF993AWK 579576397 ENCODE Processing Pipeline e32a5c1b8a04b3ce262a11b83f487588 https://www.encodeproject.org/files/ENCFF623ITO/@@download/ENCFF623ITO.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF294QET bed narrowPeak conservative idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF026ZEY, ENCFF383VAH, ENCFF547MET, ENCFF574WAP 98264 ENCODE Processing Pipeline eb287cb037120e45131367492216b4e1 https://www.encodeproject.org/files/ENCFF294QET/@@download/ENCFF294QET.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF399UKJ bed narrowPeak optimal idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF026ZEY, ENCFF383VAH, ENCFF547MET, ENCFF574WAP 105687 ENCODE Processing Pipeline c9d418cd74f7e615293b4e65566197f1 https://www.encodeproject.org/files/ENCFF399UKJ/@@download/ENCFF399UKJ.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF026ZEY bed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF329RLT, ENCFF993AWK 5906703 ENCODE Processing Pipeline fe99af60e13bf2aef0754a3da6f37f40 https://www.encodeproject.org/files/ENCFF026ZEY/@@download/ENCFF026ZEY.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF658MSK bigBed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF383VAH 2307120 ENCODE Processing Pipeline 61200fe28c72ff9778dad3955031a8bf https://www.encodeproject.org/files/ENCFF658MSK/@@download/ENCFF658MSK.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF383VAH bed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF993AWK 1033987 ENCODE Processing Pipeline 45e6c227bc8dae211850c5c24f047f72 https://www.encodeproject.org/files/ENCFF383VAH/@@download/ENCFF383VAH.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF433PPH bigBed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF026ZEY 12948727 ENCODE Processing Pipeline a01dfd10b2cd60b7bc1117bfd4617976 https://www.encodeproject.org/files/ENCFF433PPH/@@download/ENCFF433PPH.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF031ZTJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF294QET 238930 ENCODE Processing Pipeline 01d4fe8d8da8c897ccaa6a5ec9c0345d https://www.encodeproject.org/files/ENCFF031ZTJ/@@download/ENCFF031ZTJ.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF742NIT bigBed narrowPeak peaks and background as input for IDR ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF574WAP 5965965 ENCODE Processing Pipeline 3d5bbda18bf63e7e09f9accc80c417f1 https://www.encodeproject.org/files/ENCFF742NIT/@@download/ENCFF742NIT.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF967RVF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF399UKJ 249568 ENCODE Processing Pipeline 0eef896403e191d95829b3e950f81a76 https://www.encodeproject.org/files/ENCFF967RVF/@@download/ENCFF967RVF.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF387CUQ fastq reads ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1240212218 Bing Ren, UCSD c427309f92745d2b7130b89d21075969 SRA:SRR3651247 https://www.encodeproject.org/files/ENCFF387CUQ/@@download/ENCFF387CUQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length insufficient read depth, control insufficient read depth ENCFF613JON fastq reads ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1036297649 Bing Ren, UCSD 3f4ec21ee3948ba29d6fc1922930922a SRA:SRR3651248 https://www.encodeproject.org/files/ENCFF613JON/@@download/ENCFF613JON.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length insufficient read depth, control insufficient read depth ENCFF801DPR bam alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF387CUQ, ENCFF806TVZ 1111491137 ENCODE Processing Pipeline 95af8cb227b09347721049de8902e70c https://www.encodeproject.org/files/ENCFF801DPR/@@download/ENCFF801DPR.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF962RGZ bam alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF613JON, ENCFF806TVZ 978591906 ENCODE Processing Pipeline 868f9b4eeace5e54b85fd42182ffd274 https://www.encodeproject.org/files/ENCFF962RGZ/@@download/ENCFF962RGZ.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF012QUZ bigWig fold change over control ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF962RGZ 453494465 ENCODE Processing Pipeline 1562b210a2d63fb84da2f7bd28ef301e https://www.encodeproject.org/files/ENCFF012QUZ/@@download/ENCFF012QUZ.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF309KDY bed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF562EMV, ENCFF623BMA, ENCFF801DPR, ENCFF962RGZ 470168 ENCODE Processing Pipeline 8f33da782c69d553a5560f6aa305957a https://www.encodeproject.org/files/ENCFF309KDY/@@download/ENCFF309KDY.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF312PXW bed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF962RGZ 1101498 ENCODE Processing Pipeline 941e90481e8d7a8b4c9cb4c2cb27f2e0 https://www.encodeproject.org/files/ENCFF312PXW/@@download/ENCFF312PXW.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF258CKF bed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF801DPR 723294 ENCODE Processing Pipeline cc866babf2292cb0f3746b061b59bf3c https://www.encodeproject.org/files/ENCFF258CKF/@@download/ENCFF258CKF.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF657AKB bigBed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF309KDY 1323266 ENCODE Processing Pipeline d47a170ca3df753ace50952ebcd25eef https://www.encodeproject.org/files/ENCFF657AKB/@@download/ENCFF657AKB.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF246IEV bigBed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF312PXW 2609412 ENCODE Processing Pipeline 14772e9cc4b17437403424d532a720bc https://www.encodeproject.org/files/ENCFF246IEV/@@download/ENCFF246IEV.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF466OEO bigWig signal p-value ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF801DPR 483631510 ENCODE Processing Pipeline d7e1f9c039673f48713a4ee77069d58e https://www.encodeproject.org/files/ENCFF466OEO/@@download/ENCFF466OEO.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF852VIO bigBed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF258CKF 1733341 ENCODE Processing Pipeline 0bb8b525ebf5a7f42461562ea031325d https://www.encodeproject.org/files/ENCFF852VIO/@@download/ENCFF852VIO.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF886PXL bigWig signal p-value ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF962RGZ 507213972 ENCODE Processing Pipeline de9dac932a2407415b806fd899a47202 https://www.encodeproject.org/files/ENCFF886PXL/@@download/ENCFF886PXL.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF899XUP bigWig signal p-value ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF562EMV, ENCFF623BMA, ENCFF801DPR, ENCFF962RGZ 470098190 ENCODE Processing Pipeline 6f44c862ae368410f59d83b59d680a1f https://www.encodeproject.org/files/ENCFF899XUP/@@download/ENCFF899XUP.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF451OAW bigWig fold change over control ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF562EMV, ENCFF623BMA, ENCFF801DPR 499795696 ENCODE Processing Pipeline 02c436296e48bbb728c7441b8f8cad7f https://www.encodeproject.org/files/ENCFF451OAW/@@download/ENCFF451OAW.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF514INY bigWig fold change over control ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF562EMV, ENCFF623BMA, ENCFF801DPR, ENCFF962RGZ 757865284 ENCODE Processing Pipeline b82f2ec923e1671cfce047ef774584f5 https://www.encodeproject.org/files/ENCFF514INY/@@download/ENCFF514INY.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF044VFU bigBed narrowPeak replicated peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF852URP 1008633 ENCODE Processing Pipeline 6c010c39f903335b3906a6088146f1a8 https://www.encodeproject.org/files/ENCFF044VFU/@@download/ENCFF044VFU.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF852URP bed narrowPeak replicated peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF258CKF, ENCFF309KDY, ENCFF312PXW 412199 ENCODE Processing Pipeline c3942fb95e96f508e33597ab66f66de0 https://www.encodeproject.org/files/ENCFF852URP/@@download/ENCFF852URP.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF336SZX bam unfiltered alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF613JON 1376095438 ENCODE Processing Pipeline af046cb80d11b02590262d48e15759f9 https://www.encodeproject.org/files/ENCFF336SZX/@@download/ENCFF336SZX.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF868DWJ bam unfiltered alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF387CUQ 1632748813 ENCODE Processing Pipeline 084bb2c9d04998428593adc7d2ccfebb https://www.encodeproject.org/files/ENCFF868DWJ/@@download/ENCFF868DWJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF635UWO bam alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF613JON 978392822 ENCODE Processing Pipeline cb2b0071ce311c1a5605eff1a4abb7ba https://www.encodeproject.org/files/ENCFF635UWO/@@download/ENCFF635UWO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF731DGD bam alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF387CUQ 1111274927 ENCODE Processing Pipeline d2eb3b707cc4fb14fefc2d073b623a44 https://www.encodeproject.org/files/ENCFF731DGD/@@download/ENCFF731DGD.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF305XGV bed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF635UWO, ENCFF903NWQ, ENCFF995XOU 1101244 ENCODE Processing Pipeline 8869f76e8d8f4d71e04ec3db27187c44 https://www.encodeproject.org/files/ENCFF305XGV/@@download/ENCFF305XGV.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF068CBR bed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF731DGD, ENCFF903NWQ 194898 ENCODE Processing Pipeline 9d257e3d0d2285286995421f2877ce24 https://www.encodeproject.org/files/ENCFF068CBR/@@download/ENCFF068CBR.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF893EPY bigBed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF068CBR 505025 ENCODE Processing Pipeline 8d754d7d22c49add5e973373d310f66b https://www.encodeproject.org/files/ENCFF893EPY/@@download/ENCFF893EPY.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF878ATU bed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF635UWO, ENCFF731DGD, ENCFF903NWQ, ENCFF995XOU 410917 ENCODE Processing Pipeline e0d253794af2bbe1c97d590567df4cbe https://www.encodeproject.org/files/ENCFF878ATU/@@download/ENCFF878ATU.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF846KEC bigBed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF305XGV 2608082 ENCODE Processing Pipeline 71815c2dd81177cce31a50b281b1a39a https://www.encodeproject.org/files/ENCFF846KEC/@@download/ENCFF846KEC.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF069TXO bigBed narrowPeak peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF878ATU 1153328 ENCODE Processing Pipeline 937540aaa939a465a2355d95bb684167 https://www.encodeproject.org/files/ENCFF069TXO/@@download/ENCFF069TXO.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF100TYM bigWig signal p-value ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF635UWO, ENCFF903NWQ, ENCFF995XOU 507036759 ENCODE Processing Pipeline 53ee6b1bdaccea894595c0d5a36e8032 https://www.encodeproject.org/files/ENCFF100TYM/@@download/ENCFF100TYM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF106NKO bigWig signal p-value ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF731DGD, ENCFF903NWQ 256617247 ENCODE Processing Pipeline a4acc1e07cc33a705afc41912295829e https://www.encodeproject.org/files/ENCFF106NKO/@@download/ENCFF106NKO.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF603OTM bigWig signal p-value ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF635UWO, ENCFF731DGD, ENCFF903NWQ, ENCFF995XOU 489830309 ENCODE Processing Pipeline 43d620012dfa70fbf59d514eb6705ed6 https://www.encodeproject.org/files/ENCFF603OTM/@@download/ENCFF603OTM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF643DVK bigWig fold change over control ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF635UWO, ENCFF903NWQ, ENCFF995XOU 453173112 ENCODE Processing Pipeline c2455857794e3ae01ecd77ed87e96144 https://www.encodeproject.org/files/ENCFF643DVK/@@download/ENCFF643DVK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF523BXP bigWig fold change over control ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF731DGD, ENCFF903NWQ 420890763 ENCODE Processing Pipeline 60ae0d654dfabd0b86b520c3f2c6bd15 https://www.encodeproject.org/files/ENCFF523BXP/@@download/ENCFF523BXP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF574LGA bigWig fold change over control ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF635UWO, ENCFF731DGD, ENCFF903NWQ, ENCFF995XOU 769867756 ENCODE Processing Pipeline 0e8246f5999afa5c8c7088abe65ace38 https://www.encodeproject.org/files/ENCFF574LGA/@@download/ENCFF574LGA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF787IGD bed narrowPeak replicated peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF068CBR, ENCFF305XGV, ENCFF878ATU 296255 ENCODE Processing Pipeline c259a860881b4ae729ad18fcc08130f6 https://www.encodeproject.org/files/ENCFF787IGD/@@download/ENCFF787IGD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF458POP bigBed narrowPeak replicated peaks ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF787IGD 743500 ENCODE Processing Pipeline 6f5e99e55321f562ad0280e7ed96f7a2 https://www.encodeproject.org/files/ENCFF458POP/@@download/ENCFF458POP.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002AJY fastq reads ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1574110762 Bing Ren, UCSD 5b2c3a744bafb2b1aa7eb5de05564f85 SRA:SRR3652170 https://www.encodeproject.org/files/ENCFF002AJY/@@download/ENCFF002AJY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQQ/ released antibody characterized with exemption insufficient read depth ENCFF002AJZ fastq reads ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1400384760 Bing Ren, UCSD fd920aae6686b9587d6fc66ed562d394 SRA:SRR3652171 https://www.encodeproject.org/files/ENCFF002AJZ/@@download/ENCFF002AJZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQR/ released antibody characterized with exemption insufficient read depth ENCFF258EYA bam alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJY, ENCFF806TVZ 1272837928 ENCODE Processing Pipeline 9b8effce92943a27487da90442175c10 https://www.encodeproject.org/files/ENCFF258EYA/@@download/ENCFF258EYA.bam mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF633AGK bam alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJZ, ENCFF806TVZ 1239736703 ENCODE Processing Pipeline 77b59183ff480a017b81fbbc37a563ee https://www.encodeproject.org/files/ENCFF633AGK/@@download/ENCFF633AGK.bam mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF402SEC bigBed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF283XMK 3722119 ENCODE Processing Pipeline 1556b394ff8a558228c055628062165c https://www.encodeproject.org/files/ENCFF402SEC/@@download/ENCFF402SEC.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF568BCF bigWig signal p-value ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF633AGK, ENCFF791KJV 490676254 ENCODE Processing Pipeline bc2d2006530a0473616ed7fac809b77b https://www.encodeproject.org/files/ENCFF568BCF/@@download/ENCFF568BCF.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF571NPJ bigBed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF418UCO 3631979 ENCODE Processing Pipeline 54c6a760c7dc5f3495616b3a0adb3bc5 https://www.encodeproject.org/files/ENCFF571NPJ/@@download/ENCFF571NPJ.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF326ZLL bigWig signal p-value ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF258EYA, ENCFF791KJV 554724176 ENCODE Processing Pipeline b7a79fc5577716c5e3b4abf7fded1455 https://www.encodeproject.org/files/ENCFF326ZLL/@@download/ENCFF326ZLL.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF300KHE bed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF258EYA, ENCFF633AGK, ENCFF791KJV 1927158 ENCODE Processing Pipeline 11091d9781fe4dbac19978ef7a6f7ab2 https://www.encodeproject.org/files/ENCFF300KHE/@@download/ENCFF300KHE.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF418UCO bed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF633AGK, ENCFF791KJV 1524625 ENCODE Processing Pipeline 40fdfd2b2b69bb967d1ad9abf2a8126f https://www.encodeproject.org/files/ENCFF418UCO/@@download/ENCFF418UCO.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF925JUN bigWig fold change over control ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF633AGK, ENCFF791KJV 565069934 ENCODE Processing Pipeline 36337c33c437f06d9062e69881cce3ad https://www.encodeproject.org/files/ENCFF925JUN/@@download/ENCFF925JUN.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF283XMK bed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF258EYA, ENCFF791KJV 1558823 ENCODE Processing Pipeline 3c2ae8b379efc36c24b0b74d830f087b https://www.encodeproject.org/files/ENCFF283XMK/@@download/ENCFF283XMK.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF153JPY bigBed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF300KHE 4377955 ENCODE Processing Pipeline ddf93a32bcd446441617a6ad00a8a059 https://www.encodeproject.org/files/ENCFF153JPY/@@download/ENCFF153JPY.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF993LWS bigWig signal p-value ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF258EYA, ENCFF633AGK, ENCFF791KJV 656607773 ENCODE Processing Pipeline 4e18e105d1751ea718814499f6e087d6 https://www.encodeproject.org/files/ENCFF993LWS/@@download/ENCFF993LWS.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF704CYA bigWig fold change over control ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF258EYA, ENCFF791KJV 532701236 ENCODE Processing Pipeline 7debb84069f9011384ca0ae75be7cebc https://www.encodeproject.org/files/ENCFF704CYA/@@download/ENCFF704CYA.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF314UWJ bigBed narrowPeak replicated peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF467MYU 1990550 ENCODE Processing Pipeline 98d7c93572c6ff0d8e73ce2a628d13b1 https://www.encodeproject.org/files/ENCFF314UWJ/@@download/ENCFF314UWJ.bigBed mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF467MYU bed narrowPeak replicated peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF283XMK, ENCFF300KHE, ENCFF418UCO 896673 ENCODE Processing Pipeline 8a2cff8cc3dd3ad6107ee270c0e284bd https://www.encodeproject.org/files/ENCFF467MYU/@@download/ENCFF467MYU.bed.gz mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF152TUF bigWig fold change over control ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF258EYA, ENCFF633AGK, ENCFF791KJV 832467335 ENCODE Processing Pipeline f9ce47e69256e86fb76c108827fb2532 https://www.encodeproject.org/files/ENCFF152TUF/@@download/ENCFF152TUF.bigWig mm10-minimal archived antibody characterized with exemption insufficient read depth ENCFF663BSN bam unfiltered alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AJZ, ENCFF018NEO 1551783578 ENCODE Processing Pipeline f06e5fa670e7d30df24c0dec0fad692a https://www.encodeproject.org/files/ENCFF663BSN/@@download/ENCFF663BSN.bam mm10 released antibody characterized with exemption insufficient read depth ENCFF696XAM bam unfiltered alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AJY, ENCFF018NEO 1715153805 ENCODE Processing Pipeline 6ee3b0ae38fd849699a408e2d9dcf1bb https://www.encodeproject.org/files/ENCFF696XAM/@@download/ENCFF696XAM.bam mm10 released antibody characterized with exemption insufficient read depth ENCFF117UNU bam alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AJZ, ENCFF018NEO 1239529029 ENCODE Processing Pipeline 154a74ac6037cf908222eaf3b18bc6bd https://www.encodeproject.org/files/ENCFF117UNU/@@download/ENCFF117UNU.bam mm10 released antibody characterized with exemption insufficient read depth ENCFF662ZCU bam alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AJY, ENCFF018NEO 1272571918 ENCODE Processing Pipeline 3d8ee567b8b5c3bda9528045807341cb https://www.encodeproject.org/files/ENCFF662ZCU/@@download/ENCFF662ZCU.bam mm10 released antibody characterized with exemption insufficient read depth ENCFF955ZFZ bed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF117UNU, ENCFF453URD, ENCFF702TNM 1394787 ENCODE Processing Pipeline 2dd1ffa0a9d8dc9e42c35789ba324d33 https://www.encodeproject.org/files/ENCFF955ZFZ/@@download/ENCFF955ZFZ.bed.gz mm10 released antibody characterized with exemption insufficient read depth ENCFF090RND bed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF453URD, ENCFF662ZCU, ENCFF702TNM 1558782 ENCODE Processing Pipeline 24a9f9426b1289ddfb9bb9a47effdce2 https://www.encodeproject.org/files/ENCFF090RND/@@download/ENCFF090RND.bed.gz mm10 released antibody characterized with exemption insufficient read depth ENCFF224LTF bed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF117UNU, ENCFF453URD, ENCFF662ZCU, ENCFF702TNM 1926897 ENCODE Processing Pipeline b1fb39e5ba040de70279e62da5cd215a https://www.encodeproject.org/files/ENCFF224LTF/@@download/ENCFF224LTF.bed.gz mm10 released antibody characterized with exemption insufficient read depth ENCFF199IDY bigBed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF955ZFZ 3396439 ENCODE Processing Pipeline 3607e1d373057586313adecab9dea534 https://www.encodeproject.org/files/ENCFF199IDY/@@download/ENCFF199IDY.bigBed mm10 released antibody characterized with exemption insufficient read depth ENCFF862YBX bigBed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF090RND 3722800 ENCODE Processing Pipeline 78378e936c9ca7bb279fa8d24812e3c6 https://www.encodeproject.org/files/ENCFF862YBX/@@download/ENCFF862YBX.bigBed mm10 released antibody characterized with exemption insufficient read depth ENCFF333MQB bigBed narrowPeak peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224LTF 4376110 ENCODE Processing Pipeline 071cd5c9897236a07d75e20185af9868 https://www.encodeproject.org/files/ENCFF333MQB/@@download/ENCFF333MQB.bigBed mm10 released antibody characterized with exemption insufficient read depth ENCFF277YHR bigWig signal p-value ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF453URD, ENCFF662ZCU, ENCFF702TNM 549301473 ENCODE Processing Pipeline 90c837ec6f247021c220aadde40711a9 https://www.encodeproject.org/files/ENCFF277YHR/@@download/ENCFF277YHR.bigWig mm10 released antibody characterized with exemption insufficient read depth ENCFF574DYH bigWig signal p-value ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF117UNU, ENCFF453URD, ENCFF702TNM 514500250 ENCODE Processing Pipeline 0869c1615f4f69ed2bbf0b2390ed1145 https://www.encodeproject.org/files/ENCFF574DYH/@@download/ENCFF574DYH.bigWig mm10 released antibody characterized with exemption insufficient read depth ENCFF545CTN bigWig signal p-value ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF117UNU, ENCFF453URD, ENCFF662ZCU, ENCFF702TNM 755129993 ENCODE Processing Pipeline 9ed69b750cd965e2cebf0acd0816ccad https://www.encodeproject.org/files/ENCFF545CTN/@@download/ENCFF545CTN.bigWig mm10 released antibody characterized with exemption insufficient read depth ENCFF326UJZ bigWig fold change over control ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF453URD, ENCFF662ZCU, ENCFF702TNM 532705628 ENCODE Processing Pipeline 95eaa8235dd4f380402f0dad5f1cb3e4 https://www.encodeproject.org/files/ENCFF326UJZ/@@download/ENCFF326UJZ.bigWig mm10 released antibody characterized with exemption insufficient read depth ENCFF218EOT bigWig fold change over control ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF117UNU, ENCFF453URD, ENCFF702TNM 519061972 ENCODE Processing Pipeline 12d3e828454a299e6ec6efcdf9961faa https://www.encodeproject.org/files/ENCFF218EOT/@@download/ENCFF218EOT.bigWig mm10 released antibody characterized with exemption insufficient read depth ENCFF695KNJ bigWig fold change over control ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF117UNU, ENCFF453URD, ENCFF662ZCU, ENCFF702TNM 831854131 ENCODE Processing Pipeline bbfb6fa8c869953b0f441f3f9282c19d https://www.encodeproject.org/files/ENCFF695KNJ/@@download/ENCFF695KNJ.bigWig mm10 released antibody characterized with exemption insufficient read depth ENCFF109ZOH bed narrowPeak replicated peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF090RND, ENCFF224LTF, ENCFF955ZFZ 919507 ENCODE Processing Pipeline a44ff30a9eee0d3968f30aa7daa85de8 https://www.encodeproject.org/files/ENCFF109ZOH/@@download/ENCFF109ZOH.bed.gz mm10 released antibody characterized with exemption insufficient read depth ENCFF172LKQ bigBed narrowPeak replicated peaks ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF109ZOH 2036322 ENCODE Processing Pipeline 237c39bc7265c8789d31672bc3e6d89a https://www.encodeproject.org/files/ENCFF172LKQ/@@download/ENCFF172LKQ.bigBed mm10 released antibody characterized with exemption insufficient read depth ENCFF002AEP fastq reads ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1251927822 Bing Ren, UCSD 2add7aa5cbd53827703a5a0ef06c8a44 SRA:SRR3651961 https://www.encodeproject.org/files/ENCFF002AEP/@@download/ENCFF002AEP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002APU/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF002AES fastq reads ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1440572480 Bing Ren, UCSD cfd74a0142598cf74dfdf647819e246d SRA:SRR3651960 https://www.encodeproject.org/files/ENCFF002AES/@@download/ENCFF002AES.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APV/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF099ZCZ bam alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AES, ENCFF806TVZ 1141809124 ENCODE Processing Pipeline 81070b3fced56a26f8a7f38bf1686ee8 https://www.encodeproject.org/files/ENCFF099ZCZ/@@download/ENCFF099ZCZ.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF162LED bam alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AEP, ENCFF806TVZ 758808592 ENCODE Processing Pipeline 6ae4ed25de41f60f1fdd27ac85b05161 https://www.encodeproject.org/files/ENCFF162LED/@@download/ENCFF162LED.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF440TJT bed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF099ZCZ 1577239 ENCODE Processing Pipeline 909bf505ac3b58af9db42b956a330598 https://www.encodeproject.org/files/ENCFF440TJT/@@download/ENCFF440TJT.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF512OLR bed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF099ZCZ, ENCFF162LED, ENCFF228INH 1821106 ENCODE Processing Pipeline d89c61a6e6531ef77ed5474a2b1ce27a https://www.encodeproject.org/files/ENCFF512OLR/@@download/ENCFF512OLR.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF969UVV bigBed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF440TJT 4433841 ENCODE Processing Pipeline cc235fb6e8d42706a3ff0b82c317ebd2 https://www.encodeproject.org/files/ENCFF969UVV/@@download/ENCFF969UVV.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF900PNV bigBed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF578MSH 4665915 ENCODE Processing Pipeline cf68f3f2f80295e8784484fb3c01c2fc https://www.encodeproject.org/files/ENCFF900PNV/@@download/ENCFF900PNV.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF578MSH bed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF162LED, ENCFF228INH 1678349 ENCODE Processing Pipeline 94f506e5bcbb61b110ccd71d9cbb02e3 https://www.encodeproject.org/files/ENCFF578MSH/@@download/ENCFF578MSH.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF477RPS bigBed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF512OLR 4991707 ENCODE Processing Pipeline 35164dacf1d16c30d92317cd77a66b58 https://www.encodeproject.org/files/ENCFF477RPS/@@download/ENCFF477RPS.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF482IWO bigWig signal p-value ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF099ZCZ 455882706 ENCODE Processing Pipeline 0781857c173928087f09f3b6311601f1 https://www.encodeproject.org/files/ENCFF482IWO/@@download/ENCFF482IWO.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF306HGO bigWig signal p-value ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF162LED, ENCFF228INH 262450221 ENCODE Processing Pipeline 8ad53c5f4ced1bcefc469b0f2818f3aa https://www.encodeproject.org/files/ENCFF306HGO/@@download/ENCFF306HGO.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF805BSJ bigWig signal p-value ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF099ZCZ, ENCFF162LED, ENCFF228INH 670850246 ENCODE Processing Pipeline 40e9d3e723e5aa23079de617b6a30154 https://www.encodeproject.org/files/ENCFF805BSJ/@@download/ENCFF805BSJ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF599RJE bigWig fold change over control ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF099ZCZ 392961627 ENCODE Processing Pipeline b3da358af87d4a6105e63e6e42a5a6e6 https://www.encodeproject.org/files/ENCFF599RJE/@@download/ENCFF599RJE.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF438JLQ bigWig fold change over control ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF162LED, ENCFF228INH 301221532 ENCODE Processing Pipeline b953cf4618b477004ec0d2b6b026922c https://www.encodeproject.org/files/ENCFF438JLQ/@@download/ENCFF438JLQ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF831CQT bigWig fold change over control ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF099ZCZ, ENCFF162LED, ENCFF228INH 693887737 ENCODE Processing Pipeline fa4481e3b2b5f4233d805c51d4be7ab9 https://www.encodeproject.org/files/ENCFF831CQT/@@download/ENCFF831CQT.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF657UIL bigBed narrowPeak replicated peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF766AGV 3251205 ENCODE Processing Pipeline 352aa7da119fff1ed0879cb03b6643f7 https://www.encodeproject.org/files/ENCFF657UIL/@@download/ENCFF657UIL.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF766AGV bed narrowPeak replicated peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF440TJT, ENCFF512OLR, ENCFF578MSH 1501661 ENCODE Processing Pipeline 15c0755bb2190051eeab727faeced45e https://www.encodeproject.org/files/ENCFF766AGV/@@download/ENCFF766AGV.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF410GWG bam unfiltered alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEP, ENCFF018NEO 1279203578 ENCODE Processing Pipeline d3062f98548e7caa5d582c475a4bf1e0 https://www.encodeproject.org/files/ENCFF410GWG/@@download/ENCFF410GWG.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF173LTG bam unfiltered alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AES, ENCFF018NEO 1253390246 ENCODE Processing Pipeline 1d81c1a7b7accf0b4d5aee38e7fe208d https://www.encodeproject.org/files/ENCFF173LTG/@@download/ENCFF173LTG.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF549PWG bam alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEP, ENCFF018NEO 758676837 ENCODE Processing Pipeline 96b53d37c0ce329433394dc28216ca78 https://www.encodeproject.org/files/ENCFF549PWG/@@download/ENCFF549PWG.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF098HOY bam alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AES, ENCFF018NEO 895047303 ENCODE Processing Pipeline d24cf2af0367418593b52a455166d40e https://www.encodeproject.org/files/ENCFF098HOY/@@download/ENCFF098HOY.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF486SSE bed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF549PWG 1692884 ENCODE Processing Pipeline 4dc2ddf14f32cccc7ff685ccbb62cf52 https://www.encodeproject.org/files/ENCFF486SSE/@@download/ENCFF486SSE.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF758GSP bigBed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF486SSE 4723381 ENCODE Processing Pipeline 32bce8b1ed1f66bc5ce9033ebe0c4a7f https://www.encodeproject.org/files/ENCFF758GSP/@@download/ENCFF758GSP.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF109GBD bigWig signal p-value ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF549PWG 326463284 ENCODE Processing Pipeline 69316c399e4952fa5441a9e0e31a5cd1 https://www.encodeproject.org/files/ENCFF109GBD/@@download/ENCFF109GBD.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF593MKR bigWig fold change over control ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF396CVK, ENCFF549PWG 317997470 ENCODE Processing Pipeline aa19a14465e18f01fe0abc18835e756d https://www.encodeproject.org/files/ENCFF593MKR/@@download/ENCFF593MKR.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF266LUE bed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF098HOY, ENCFF506NSJ 1571704 ENCODE Processing Pipeline d18f7fc010a5caf42349aeaa780900c1 https://www.encodeproject.org/files/ENCFF266LUE/@@download/ENCFF266LUE.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF421LZC bed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098HOY, ENCFF396CVK, ENCFF506NSJ, ENCFF549PWG 1722251 ENCODE Processing Pipeline db5630d67451f7da4e8984cc471d8eea https://www.encodeproject.org/files/ENCFF421LZC/@@download/ENCFF421LZC.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF069VAX bigBed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF421LZC 4770734 ENCODE Processing Pipeline b9b404a063ed951f2e79c905f62cea66 https://www.encodeproject.org/files/ENCFF069VAX/@@download/ENCFF069VAX.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF674RGQ bigWig signal p-value ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF098HOY, ENCFF506NSJ 368087774 ENCODE Processing Pipeline cd119f56e0fd0263a315cb45ccf11245 https://www.encodeproject.org/files/ENCFF674RGQ/@@download/ENCFF674RGQ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF946MXZ bigBed narrowPeak peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF266LUE 4432773 ENCODE Processing Pipeline d9b102765b017e439dd32bd2db305c57 https://www.encodeproject.org/files/ENCFF946MXZ/@@download/ENCFF946MXZ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF481VBT bigWig signal p-value ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098HOY, ENCFF396CVK, ENCFF506NSJ, ENCFF549PWG 645218040 ENCODE Processing Pipeline 47ec121b71badb59e1c2f3830b532d4e https://www.encodeproject.org/files/ENCFF481VBT/@@download/ENCFF481VBT.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF942MAK bigWig fold change over control ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF098HOY, ENCFF506NSJ 392235063 ENCODE Processing Pipeline fa07cdf7af63dbb90e7ffed1dc417849 https://www.encodeproject.org/files/ENCFF942MAK/@@download/ENCFF942MAK.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF689PCR bigWig fold change over control ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098HOY, ENCFF396CVK, ENCFF506NSJ, ENCFF549PWG 707458907 ENCODE Processing Pipeline 16c07332aaa4a40bdd93446c7f4626a9 https://www.encodeproject.org/files/ENCFF689PCR/@@download/ENCFF689PCR.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF872OSV bigBed narrowPeak replicated peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF153SIZ 3293162 ENCODE Processing Pipeline 7eae637be814e544815759dfd30966b0 https://www.encodeproject.org/files/ENCFF872OSV/@@download/ENCFF872OSV.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF153SIZ bed narrowPeak replicated peaks ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF266LUE, ENCFF421LZC, ENCFF486SSE 1545218 ENCODE Processing Pipeline 99dadbbecba19e17d156bf108f794558 https://www.encodeproject.org/files/ENCFF153SIZ/@@download/ENCFF153SIZ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF002BWJ fastq reads ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1340453048 Bing Ren, UCSD 0e96f045a0aebfa35e505253787cf845 SRA:SRR3651946 https://www.encodeproject.org/files/ENCFF002BWJ/@@download/ENCFF002BWJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXU/ released low read length ENCFF002BWK fastq reads ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1492863045 Bing Ren, UCSD e65db718ed255afe0e7dfe92e4a32b10 SRA:SRR3651947 https://www.encodeproject.org/files/ENCFF002BWK/@@download/ENCFF002BWK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXS/ released low read length ENCFF922USK bam alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWJ, ENCFF806TVZ 1187209880 ENCODE Processing Pipeline be2fae5f8294f7bd2506352e44fac8b2 https://www.encodeproject.org/files/ENCFF922USK/@@download/ENCFF922USK.bam mm10-minimal archived low read length ENCFF701VAG bam alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWK, ENCFF806TVZ 1277855499 ENCODE Processing Pipeline 5759773dfe75ccc7eddd6214d3916ac6 https://www.encodeproject.org/files/ENCFF701VAG/@@download/ENCFF701VAG.bam mm10-minimal archived low read length ENCFF115IIW bed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF532IQU, ENCFF540VMM, ENCFF922USK 1863571 ENCODE Processing Pipeline ef0676d3448dfe65b466e803cfd6686b https://www.encodeproject.org/files/ENCFF115IIW/@@download/ENCFF115IIW.bed.gz mm10-minimal archived low read length ENCFF172RVD bed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF701VAG 1481848 ENCODE Processing Pipeline 78a3eb2a2fb199b6dac621f6467af18b https://www.encodeproject.org/files/ENCFF172RVD/@@download/ENCFF172RVD.bed.gz mm10-minimal archived low read length ENCFF171CCD bed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF532IQU, ENCFF540VMM, ENCFF701VAG, ENCFF922USK 1673276 ENCODE Processing Pipeline 974429a48d6c5bbf49b53568029c2448 https://www.encodeproject.org/files/ENCFF171CCD/@@download/ENCFF171CCD.bed.gz mm10-minimal archived low read length ENCFF239VPS bigBed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF172RVD 4331842 ENCODE Processing Pipeline e08e743d039d12c82dc3b4bbd2358846 https://www.encodeproject.org/files/ENCFF239VPS/@@download/ENCFF239VPS.bigBed mm10-minimal archived low read length ENCFF629UQZ bigBed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF115IIW 5239945 ENCODE Processing Pipeline 1ed87f7f0a0a788bf90712c1bcbc2eeb https://www.encodeproject.org/files/ENCFF629UQZ/@@download/ENCFF629UQZ.bigBed mm10-minimal archived low read length ENCFF444HOR bigWig signal p-value ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF701VAG 633192378 ENCODE Processing Pipeline 1146945e15c0130278c347003a517a5c https://www.encodeproject.org/files/ENCFF444HOR/@@download/ENCFF444HOR.bigWig mm10-minimal archived low read length ENCFF715IMW bigBed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF171CCD 4709565 ENCODE Processing Pipeline e6649ee23ef6284e2ce3009b3c068079 https://www.encodeproject.org/files/ENCFF715IMW/@@download/ENCFF715IMW.bigBed mm10-minimal archived low read length ENCFF916JFC bigWig signal p-value ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF532IQU, ENCFF540VMM, ENCFF922USK 616180863 ENCODE Processing Pipeline 7432c7e975b5850b2dfca4b1213bbf1b https://www.encodeproject.org/files/ENCFF916JFC/@@download/ENCFF916JFC.bigWig mm10-minimal archived low read length ENCFF483MUW bigWig signal p-value ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF532IQU, ENCFF540VMM, ENCFF701VAG, ENCFF922USK 861531372 ENCODE Processing Pipeline 27838da268717e0c3615e39a6cbec175 https://www.encodeproject.org/files/ENCFF483MUW/@@download/ENCFF483MUW.bigWig mm10-minimal archived low read length ENCFF265UKB bigWig fold change over control ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF701VAG 638608874 ENCODE Processing Pipeline 142435c49d3e4a834ecb54a6d3e9cd29 https://www.encodeproject.org/files/ENCFF265UKB/@@download/ENCFF265UKB.bigWig mm10-minimal archived low read length ENCFF619GMM bigWig fold change over control ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF532IQU, ENCFF540VMM, ENCFF922USK 619222880 ENCODE Processing Pipeline f7e6cdfad05f69fef1f29be7ca7e13ef https://www.encodeproject.org/files/ENCFF619GMM/@@download/ENCFF619GMM.bigWig mm10-minimal archived low read length ENCFF897MPQ bed narrowPeak replicated peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF115IIW, ENCFF171CCD, ENCFF172RVD 1655314 ENCODE Processing Pipeline 2da8af1edb3878f9756bccb95b95f38b https://www.encodeproject.org/files/ENCFF897MPQ/@@download/ENCFF897MPQ.bed.gz mm10-minimal archived low read length ENCFF542AUO bigBed narrowPeak replicated peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF897MPQ 3514956 ENCODE Processing Pipeline 1e456ebe877929268afd00f6949175cf https://www.encodeproject.org/files/ENCFF542AUO/@@download/ENCFF542AUO.bigBed mm10-minimal archived low read length ENCFF285XNC bigWig fold change over control ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF532IQU, ENCFF540VMM, ENCFF701VAG, ENCFF922USK 953035263 ENCODE Processing Pipeline c032ba818f6ab76c30e7569fdcdbdc2f https://www.encodeproject.org/files/ENCFF285XNC/@@download/ENCFF285XNC.bigWig mm10-minimal archived low read length ENCFF261ESJ bam unfiltered alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWJ, ENCFF018NEO 1699608505 ENCODE Processing Pipeline 228dc45d47271a7a11616013f2574024 https://www.encodeproject.org/files/ENCFF261ESJ/@@download/ENCFF261ESJ.bam mm10 released low read length ENCFF568GUC bam unfiltered alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWK, ENCFF018NEO 1911532750 ENCODE Processing Pipeline 0194131d03207e5294450c01ee8dd2bf https://www.encodeproject.org/files/ENCFF568GUC/@@download/ENCFF568GUC.bam mm10 released low read length ENCFF829WUL bam alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWJ, ENCFF018NEO 1186989553 ENCODE Processing Pipeline d3a91a618a7e8f26ca23083e29a8fe51 https://www.encodeproject.org/files/ENCFF829WUL/@@download/ENCFF829WUL.bam mm10 released low read length ENCFF097OBB bam alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWK, ENCFF018NEO 1277556135 ENCODE Processing Pipeline 35d1dc649d424d9837bad866fc4eb405 https://www.encodeproject.org/files/ENCFF097OBB/@@download/ENCFF097OBB.bam mm10 released low read length ENCFF472QFM bed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF742VJP, ENCFF829WUL 1863652 ENCODE Processing Pipeline 61b880475800be0bed3dc9d873c34b2d https://www.encodeproject.org/files/ENCFF472QFM/@@download/ENCFF472QFM.bed.gz mm10 released low read length ENCFF813GOG bed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF097OBB, ENCFF394IRO, ENCFF742VJP, ENCFF829WUL 1728123 ENCODE Processing Pipeline ac11f67041f15948c98330394f43d774 https://www.encodeproject.org/files/ENCFF813GOG/@@download/ENCFF813GOG.bed.gz mm10 released low read length ENCFF201BDB bed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF097OBB, ENCFF394IRO, ENCFF742VJP 1508280 ENCODE Processing Pipeline 2ac4fbcc2ca33cd44a3599f229d27877 https://www.encodeproject.org/files/ENCFF201BDB/@@download/ENCFF201BDB.bed.gz mm10 released low read length ENCFF393MDM bigBed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF201BDB 4403500 ENCODE Processing Pipeline 8ccc053d187c9891e15bb5ad93a15b3e https://www.encodeproject.org/files/ENCFF393MDM/@@download/ENCFF393MDM.bigBed mm10 released low read length ENCFF808CLP bigBed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF472QFM 5241162 ENCODE Processing Pipeline 7547bfa7c89f95ecef4a786063dae05c https://www.encodeproject.org/files/ENCFF808CLP/@@download/ENCFF808CLP.bigBed mm10 released low read length ENCFF035DBE bigBed narrowPeak peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF813GOG 4857779 ENCODE Processing Pipeline 643340c4279b36531de9b0cce32b5dd0 https://www.encodeproject.org/files/ENCFF035DBE/@@download/ENCFF035DBE.bigBed mm10 released low read length ENCFF319ISH bigWig signal p-value ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF097OBB, ENCFF394IRO, ENCFF742VJP 683267244 ENCODE Processing Pipeline f28431ffc7a9f3c7164005971cf6b556 https://www.encodeproject.org/files/ENCFF319ISH/@@download/ENCFF319ISH.bigWig mm10 released low read length ENCFF260PXD bigWig signal p-value ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF742VJP, ENCFF829WUL 689180699 ENCODE Processing Pipeline 899e9edbfde2ff1a7f81db4c6ebbf880 https://www.encodeproject.org/files/ENCFF260PXD/@@download/ENCFF260PXD.bigWig mm10 released low read length ENCFF838SFC bigWig signal p-value ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF097OBB, ENCFF394IRO, ENCFF742VJP, ENCFF829WUL 850980433 ENCODE Processing Pipeline ce54ac9e1770064d57fdb8e8b98310fb https://www.encodeproject.org/files/ENCFF838SFC/@@download/ENCFF838SFC.bigWig mm10 released low read length ENCFF139HQC bigWig fold change over control ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF097OBB, ENCFF394IRO, ENCFF742VJP 652770967 ENCODE Processing Pipeline c15273fe76240ceefa9a2e1743187dcd https://www.encodeproject.org/files/ENCFF139HQC/@@download/ENCFF139HQC.bigWig mm10 released low read length ENCFF946WYP bigWig fold change over control ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF394IRO, ENCFF742VJP, ENCFF829WUL 617410436 ENCODE Processing Pipeline 5637f39cbd896e2fb81acecd7763742e https://www.encodeproject.org/files/ENCFF946WYP/@@download/ENCFF946WYP.bigWig mm10 released low read length ENCFF132TLS bigWig fold change over control ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF097OBB, ENCFF394IRO, ENCFF742VJP, ENCFF829WUL 943430226 ENCODE Processing Pipeline f088d8e670d7ee65b717576f0bf55d1c https://www.encodeproject.org/files/ENCFF132TLS/@@download/ENCFF132TLS.bigWig mm10 released low read length ENCFF386RYT bed narrowPeak replicated peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF201BDB, ENCFF472QFM, ENCFF813GOG 1667590 ENCODE Processing Pipeline bb23bcc6a6e3b258b230e32c5197133c https://www.encodeproject.org/files/ENCFF386RYT/@@download/ENCFF386RYT.bed.gz mm10 released low read length ENCFF388NYB bigBed narrowPeak replicated peaks ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF386RYT 3535963 ENCODE Processing Pipeline 3c86ac2558eb43dd10479f978b837021 https://www.encodeproject.org/files/ENCFF388NYB/@@download/ENCFF388NYB.bigBed mm10 released low read length ENCFF002AIJ fastq reads ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1327674272 Bing Ren, UCSD 09c793279d50ad68ad3206bd67bb0490 SRA:SRR3653001 https://www.encodeproject.org/files/ENCFF002AIJ/@@download/ENCFF002AIJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQO/ released low read length, inconsistent control read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF002AIN fastq reads ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1597286672 Bing Ren, UCSD 0096dc5b933dfbba7d4e6551cc9951cf SRA:SRR3653000 https://www.encodeproject.org/files/ENCFF002AIN/@@download/ENCFF002AIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQL/ released low read length, inconsistent control read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF804WWV bam alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIN, ENCFF806TVZ 1274878359 ENCODE Processing Pipeline 332cbdf41ee642e03e0b9c105b827ede https://www.encodeproject.org/files/ENCFF804WWV/@@download/ENCFF804WWV.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF552RZA bam alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIJ, ENCFF806TVZ 959794591 ENCODE Processing Pipeline 3b6d3893b14e643cfceb2f4a980b3900 https://www.encodeproject.org/files/ENCFF552RZA/@@download/ENCFF552RZA.bam mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF619XCT bed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF552RZA, ENCFF786XLC 1704404 ENCODE Processing Pipeline 3fbf1253bd20a9035fea9c81116de777 https://www.encodeproject.org/files/ENCFF619XCT/@@download/ENCFF619XCT.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF703FKB bed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF786XLC, ENCFF804WWV 2246089 ENCODE Processing Pipeline 5bcc26571b72da1b699953401910f198 https://www.encodeproject.org/files/ENCFF703FKB/@@download/ENCFF703FKB.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF630PKN bigBed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF619XCT 3086338 ENCODE Processing Pipeline 312d5832f9737a54108460a560106bb3 https://www.encodeproject.org/files/ENCFF630PKN/@@download/ENCFF630PKN.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF877NII bed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF552RZA, ENCFF786XLC, ENCFF804WWV 1961878 ENCODE Processing Pipeline e194267461fc3c6ca2f9f822b9343fdc https://www.encodeproject.org/files/ENCFF877NII/@@download/ENCFF877NII.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF254CCZ bigBed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF703FKB 4898059 ENCODE Processing Pipeline d4a88c51f2762fc2f5c85f3ddaa01376 https://www.encodeproject.org/files/ENCFF254CCZ/@@download/ENCFF254CCZ.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF483POS bigBed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF877NII 4246726 ENCODE Processing Pipeline 81d86e9cd90ce8a5a22bce1f11863dd3 https://www.encodeproject.org/files/ENCFF483POS/@@download/ENCFF483POS.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF952IMQ bigWig signal p-value ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF552RZA, ENCFF786XLC 408786197 ENCODE Processing Pipeline 0c5df886845ca547f9c15e0854e760ae https://www.encodeproject.org/files/ENCFF952IMQ/@@download/ENCFF952IMQ.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF615OUY bigWig signal p-value ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF552RZA, ENCFF786XLC, ENCFF804WWV 633439639 ENCODE Processing Pipeline c16b0b5d7230b5942e4e7e8ca45afdc8 https://www.encodeproject.org/files/ENCFF615OUY/@@download/ENCFF615OUY.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF928LEA bigWig signal p-value ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF786XLC, ENCFF804WWV 467927460 ENCODE Processing Pipeline 8ccd8acd182b80f3f995368a98494677 https://www.encodeproject.org/files/ENCFF928LEA/@@download/ENCFF928LEA.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF783DYS bigWig fold change over control ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF248DBJ, ENCFF786XLC, ENCFF804WWV 490494425 ENCODE Processing Pipeline f64930c9a0b4a304ed6ad1f852e0c396 https://www.encodeproject.org/files/ENCFF783DYS/@@download/ENCFF783DYS.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF189FRF bigWig fold change over control ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF248DBJ, ENCFF552RZA, ENCFF786XLC 440494164 ENCODE Processing Pipeline 73095117851fdf964574cf2518055ce7 https://www.encodeproject.org/files/ENCFF189FRF/@@download/ENCFF189FRF.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF671IGZ bigWig fold change over control ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF248DBJ, ENCFF552RZA, ENCFF786XLC, ENCFF804WWV 747579837 ENCODE Processing Pipeline fb7a58a2a662a36ba132cdbcb1be3923 https://www.encodeproject.org/files/ENCFF671IGZ/@@download/ENCFF671IGZ.bigWig mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF088JGD bed narrowPeak replicated peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF619XCT, ENCFF703FKB, ENCFF877NII 1471331 ENCODE Processing Pipeline b7c6a4360f68c9221e5da8ad657d91d0 https://www.encodeproject.org/files/ENCFF088JGD/@@download/ENCFF088JGD.bed.gz mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF278WMI bigBed narrowPeak replicated peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088JGD 2872076 ENCODE Processing Pipeline 7ffa046dd6fd3cb6f1f9d3835e7639b6 https://www.encodeproject.org/files/ENCFF278WMI/@@download/ENCFF278WMI.bigBed mm10-minimal archived low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF522DFM bam unfiltered alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIN, ENCFF018NEO 1439251847 ENCODE Processing Pipeline 2321a6b23f3931e07d62e8abbcc3d58c https://www.encodeproject.org/files/ENCFF522DFM/@@download/ENCFF522DFM.bam mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF327LTH bam unfiltered alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIJ, ENCFF018NEO 1448240849 ENCODE Processing Pipeline 2e22aa1457a2a09dcea10330270f05e4 https://www.encodeproject.org/files/ENCFF327LTH/@@download/ENCFF327LTH.bam mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF917WHG bam alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIN, ENCFF018NEO 985558051 ENCODE Processing Pipeline 700881e1c3cbabdc1bee3d692d0b946b https://www.encodeproject.org/files/ENCFF917WHG/@@download/ENCFF917WHG.bam mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF076LIY bam alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIJ, ENCFF018NEO 959501341 ENCODE Processing Pipeline 58f7e7f046669c9021af998fa025844a https://www.encodeproject.org/files/ENCFF076LIY/@@download/ENCFF076LIY.bam mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF988CYO bed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF076LIY, ENCFF424QZD, ENCFF767URV 1694553 ENCODE Processing Pipeline 8515897cc2d51b325f87134289b3b37e https://www.encodeproject.org/files/ENCFF988CYO/@@download/ENCFF988CYO.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF159EXE bed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF767URV, ENCFF917WHG 1694100 ENCODE Processing Pipeline 347da7b1f1ccec74b15cd2abc0c7e539 https://www.encodeproject.org/files/ENCFF159EXE/@@download/ENCFF159EXE.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF252IRV bed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF076LIY, ENCFF424QZD, ENCFF767URV, ENCFF917WHG 2083627 ENCODE Processing Pipeline a6249bd8410b321fe51af8b28095e02c https://www.encodeproject.org/files/ENCFF252IRV/@@download/ENCFF252IRV.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF888HBQ bigBed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF988CYO 3087279 ENCODE Processing Pipeline 6dbb3155becc94e830a5c944a34fb4c7 https://www.encodeproject.org/files/ENCFF888HBQ/@@download/ENCFF888HBQ.bigBed mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF962IFR bigBed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF159EXE 2877514 ENCODE Processing Pipeline f3f9ff686db92926e4d42f3dc21d4c03 https://www.encodeproject.org/files/ENCFF962IFR/@@download/ENCFF962IFR.bigBed mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF840IGU bigBed narrowPeak peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF252IRV 4541032 ENCODE Processing Pipeline af365f803a2a430c1301b0a2dd1980ac https://www.encodeproject.org/files/ENCFF840IGU/@@download/ENCFF840IGU.bigBed mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF441YET bigWig signal p-value ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF076LIY, ENCFF424QZD, ENCFF767URV 378618798 ENCODE Processing Pipeline 8e3269d08db9021184ecb5850fd0254c https://www.encodeproject.org/files/ENCFF441YET/@@download/ENCFF441YET.bigWig mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF405YWP bigWig signal p-value ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF767URV, ENCFF917WHG 336742946 ENCODE Processing Pipeline e1bbb95d3c4a7b300561f454fe20c60d https://www.encodeproject.org/files/ENCFF405YWP/@@download/ENCFF405YWP.bigWig mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF643CXY bigWig signal p-value ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF076LIY, ENCFF424QZD, ENCFF767URV, ENCFF917WHG 618188063 ENCODE Processing Pipeline b787e077b7636cce84bbf6e7fed7b9cf https://www.encodeproject.org/files/ENCFF643CXY/@@download/ENCFF643CXY.bigWig mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF293AGB bigWig fold change over control ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF076LIY, ENCFF424QZD, ENCFF767URV 448459838 ENCODE Processing Pipeline 928e859090505c6122342f4e321090fa https://www.encodeproject.org/files/ENCFF293AGB/@@download/ENCFF293AGB.bigWig mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF020WTI bigWig fold change over control ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF767URV, ENCFF917WHG 382626204 ENCODE Processing Pipeline 6a60825e7188bb0c2d73fbe7247dba74 https://www.encodeproject.org/files/ENCFF020WTI/@@download/ENCFF020WTI.bigWig mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF713BVE bigWig fold change over control ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF076LIY, ENCFF424QZD, ENCFF767URV, ENCFF917WHG 721375569 ENCODE Processing Pipeline 37c8c67211ecfc15baae126bfb99320c https://www.encodeproject.org/files/ENCFF713BVE/@@download/ENCFF713BVE.bigWig mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF815AIK bed narrowPeak replicated peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF159EXE, ENCFF252IRV, ENCFF988CYO 1488244 ENCODE Processing Pipeline eac38e685ae8f34ca5c85900dd1ab017 https://www.encodeproject.org/files/ENCFF815AIK/@@download/ENCFF815AIK.bed.gz mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF150VVR bigBed narrowPeak replicated peaks ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF815AIK 2935160 ENCODE Processing Pipeline b803a19f300eaf91d67c42c637cd61ab https://www.encodeproject.org/files/ENCFF150VVR/@@download/ENCFF150VVR.bigBed mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF002ANE fastq reads ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1457252804 Bing Ren, UCSD 452204b7d45e46ed76b41107f06cdf8d SRA:SRR3651712 https://www.encodeproject.org/files/ENCFF002ANE/@@download/ENCFF002ANE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQR/ released mixed read lengths, low read length, low read depth ENCFF002CCA fastq reads ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 844751003 Bing Ren, UCSD b7fef57479da3da7aecd5e2b737c49c1 SRA:SRR3651713 https://www.encodeproject.org/files/ENCFF002CCA/@@download/ENCFF002CCA.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQQ/ released mixed read lengths, low read length, inconsistent control read length, low read depth ENCFF980IZX bam alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANE, ENCFF806TVZ 921859200 ENCODE Processing Pipeline bbbba216942349da204a2667ec8c6403 https://www.encodeproject.org/files/ENCFF980IZX/@@download/ENCFF980IZX.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF864NDL bam alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002CCA, ENCFF806TVZ 735321937 ENCODE Processing Pipeline 8987618b6b90712a4cd9dc51a335f08c https://www.encodeproject.org/files/ENCFF864NDL/@@download/ENCFF864NDL.bam mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF030UJQ bed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF980IZX 478946 ENCODE Processing Pipeline d54c9bd7aa031a7de6e2a8fa1e4b579a https://www.encodeproject.org/files/ENCFF030UJQ/@@download/ENCFF030UJQ.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF341QEM bigBed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF030UJQ 1635854 ENCODE Processing Pipeline ac2ca1805099273523da091fd6c80563 https://www.encodeproject.org/files/ENCFF341QEM/@@download/ENCFF341QEM.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF407IAA bed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF791KJV, ENCFF864NDL, ENCFF980IZX 518662 ENCODE Processing Pipeline 18e80490e37a0d3825b3a35ac476af7b https://www.encodeproject.org/files/ENCFF407IAA/@@download/ENCFF407IAA.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF873QHZ bigBed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF822KMZ 1731417 ENCODE Processing Pipeline c65c36808bf1256be324c39b15955d40 https://www.encodeproject.org/files/ENCFF873QHZ/@@download/ENCFF873QHZ.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF822KMZ bed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF864NDL 518836 ENCODE Processing Pipeline d1afc940529d4c7daa52d6c353b52b73 https://www.encodeproject.org/files/ENCFF822KMZ/@@download/ENCFF822KMZ.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF734ODQ bigWig signal p-value ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF864NDL 501329320 ENCODE Processing Pipeline bba372c032a206ebfd1b86a6bc05b1ed https://www.encodeproject.org/files/ENCFF734ODQ/@@download/ENCFF734ODQ.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF161ZOV bigBed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF407IAA 1733858 ENCODE Processing Pipeline a809531b23d0436d9045975b8bcf5234 https://www.encodeproject.org/files/ENCFF161ZOV/@@download/ENCFF161ZOV.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF180XCB bigWig signal p-value ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF980IZX 403309942 ENCODE Processing Pipeline 1820a9119d06de032a592f1363359d6a https://www.encodeproject.org/files/ENCFF180XCB/@@download/ENCFF180XCB.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF516EUP bigWig signal p-value ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF791KJV, ENCFF864NDL, ENCFF980IZX 651882936 ENCODE Processing Pipeline c1aa85aa39db08b12b563f9c219b359f https://www.encodeproject.org/files/ENCFF516EUP/@@download/ENCFF516EUP.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF096SDQ bigWig fold change over control ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF148UUT, ENCFF791KJV, ENCFF864NDL 360047958 ENCODE Processing Pipeline acc07592e009cd9fd91e40af82b31e8a https://www.encodeproject.org/files/ENCFF096SDQ/@@download/ENCFF096SDQ.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF875CQU bigWig fold change over control ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF148UUT, ENCFF791KJV, ENCFF864NDL, ENCFF980IZX 625201350 ENCODE Processing Pipeline 16fc4a7ed280995a5e5ef01aeb0e8066 https://www.encodeproject.org/files/ENCFF875CQU/@@download/ENCFF875CQU.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF049PSC bigWig fold change over control ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF148UUT, ENCFF791KJV, ENCFF980IZX 381902809 ENCODE Processing Pipeline e5bec2d553899e72ebab267d6d987b54 https://www.encodeproject.org/files/ENCFF049PSC/@@download/ENCFF049PSC.bigWig mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF066LGF bed narrowPeak replicated peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF030UJQ, ENCFF407IAA, ENCFF822KMZ 600761 ENCODE Processing Pipeline 6c8ebebfa8cb47e09343ce16d14b301d https://www.encodeproject.org/files/ENCFF066LGF/@@download/ENCFF066LGF.bed.gz mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF976RHT bigBed narrowPeak replicated peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF066LGF 1521720 ENCODE Processing Pipeline d922796d76570c5d028c10fcb13fafd4 https://www.encodeproject.org/files/ENCFF976RHT/@@download/ENCFF976RHT.bigBed mm10-minimal archived mixed read lengths, low read length, low read depth ENCFF327TDD bam unfiltered alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANE, ENCFF018NEO 1142079305 ENCODE Processing Pipeline 56a43c143d08479f629e11a2624d7bc7 https://www.encodeproject.org/files/ENCFF327TDD/@@download/ENCFF327TDD.bam mm10 released mixed read lengths, low read length, low read depth ENCFF801BNJ bam unfiltered alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002CCA, ENCFF018NEO 1132081543 ENCODE Processing Pipeline 4a909a44dcdb4f3e96bd67a570ab1e9e https://www.encodeproject.org/files/ENCFF801BNJ/@@download/ENCFF801BNJ.bam mm10 released mixed read lengths, low read length, low read depth ENCFF084XLB bam alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002CCA, ENCFF018NEO 735141042 ENCODE Processing Pipeline 176053422dfb14ad8eb51ca7eb781148 https://www.encodeproject.org/files/ENCFF084XLB/@@download/ENCFF084XLB.bam mm10 released mixed read lengths, low read length, low read depth ENCFF268XUX bam alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANE, ENCFF018NEO 721237503 ENCODE Processing Pipeline 79dad5f19e86826300bbfa5b6a592aa0 https://www.encodeproject.org/files/ENCFF268XUX/@@download/ENCFF268XUX.bam mm10 released mixed read lengths, low read length, low read depth ENCFF161AVZ bed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF084XLB, ENCFF419KAT, ENCFF955BDA 526081 ENCODE Processing Pipeline 125cdcc5c4919ce99b4c1642f9c37e50 https://www.encodeproject.org/files/ENCFF161AVZ/@@download/ENCFF161AVZ.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF365HEU bed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF268XUX, ENCFF419KAT, ENCFF955BDA 489262 ENCODE Processing Pipeline 67206cbf98d3e0ae51db05e3662d954f https://www.encodeproject.org/files/ENCFF365HEU/@@download/ENCFF365HEU.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF572BJO bed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF084XLB, ENCFF268XUX, ENCFF419KAT, ENCFF955BDA 543528 ENCODE Processing Pipeline 8186962f6a5bd1ae3a14e6b563751147 https://www.encodeproject.org/files/ENCFF572BJO/@@download/ENCFF572BJO.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF071OGX bigBed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF161AVZ 1758340 ENCODE Processing Pipeline 818b71467b1985d50ac05776ece77c7f https://www.encodeproject.org/files/ENCFF071OGX/@@download/ENCFF071OGX.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF309AFB bigBed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF572BJO 1785150 ENCODE Processing Pipeline fb49dc1c290e5968a8cbe2888a78675b https://www.encodeproject.org/files/ENCFF309AFB/@@download/ENCFF309AFB.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF327PFT bigBed narrowPeak peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF365HEU 1659156 ENCODE Processing Pipeline 1b55c5059808bf0831ecae5a64d9ec9e https://www.encodeproject.org/files/ENCFF327PFT/@@download/ENCFF327PFT.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF934UPP bigWig signal p-value ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF084XLB, ENCFF419KAT, ENCFF955BDA 466362554 ENCODE Processing Pipeline 22fcf78a6d44f81016cbdd075b8a7d65 https://www.encodeproject.org/files/ENCFF934UPP/@@download/ENCFF934UPP.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF992HMP bigWig signal p-value ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF268XUX, ENCFF419KAT, ENCFF955BDA 551462624 ENCODE Processing Pipeline cbc3216e83f1914357ebdf4107689f79 https://www.encodeproject.org/files/ENCFF992HMP/@@download/ENCFF992HMP.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF882ZQQ bigWig signal p-value ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF084XLB, ENCFF268XUX, ENCFF419KAT, ENCFF955BDA 668902040 ENCODE Processing Pipeline da9b4463c28d8d954d34824d9b26f97e https://www.encodeproject.org/files/ENCFF882ZQQ/@@download/ENCFF882ZQQ.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF254BAP bigWig fold change over control ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF084XLB, ENCFF419KAT, ENCFF955BDA 401095657 ENCODE Processing Pipeline bd8bdf98a4b6944df8915ba64b0bd803 https://www.encodeproject.org/files/ENCFF254BAP/@@download/ENCFF254BAP.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF265DXF bigWig fold change over control ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF268XUX, ENCFF419KAT, ENCFF955BDA 399362761 ENCODE Processing Pipeline 88dc99daf67ef3cb4a20cb56f3ff19f7 https://www.encodeproject.org/files/ENCFF265DXF/@@download/ENCFF265DXF.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF330NUS bigWig fold change over control ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF084XLB, ENCFF268XUX, ENCFF419KAT, ENCFF955BDA 606969760 ENCODE Processing Pipeline 3be640bace0a8f8f6b14d79525ab0050 https://www.encodeproject.org/files/ENCFF330NUS/@@download/ENCFF330NUS.bigWig mm10 released mixed read lengths, low read length, low read depth ENCFF782WPT bed narrowPeak replicated peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF161AVZ, ENCFF365HEU, ENCFF572BJO 606400 ENCODE Processing Pipeline ebfb09254711b1bc635251a0d44413ee https://www.encodeproject.org/files/ENCFF782WPT/@@download/ENCFF782WPT.bed.gz mm10 released mixed read lengths, low read length, low read depth ENCFF022PPU bigBed narrowPeak replicated peaks ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF782WPT 1527474 ENCODE Processing Pipeline 5550330473d13ac71671284826984543 https://www.encodeproject.org/files/ENCFF022PPU/@@download/ENCFF022PPU.bigBed mm10 released mixed read lengths, low read length, low read depth ENCFF524BAT fastq reads ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1114272463 Richard Myers, HAIB 25c9181e232ffe373adf917e5d56be28 SRA:SRR5111943 https://www.encodeproject.org/files/ENCFF524BAT/@@download/ENCFF524BAT.fastq.gz Illumina HiSeq 2000 /files/ENCFF285EZB/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF472KEL fastq reads ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 1 50 single-ended 991464388 Richard Myers, HAIB 389c92becfef24c09cfa179c5482fcf7 SRA:SRR5111944 https://www.encodeproject.org/files/ENCFF472KEL/@@download/ENCFF472KEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF285EZB/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF778JBR bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF472KEL, ENCFF806TVZ 799393761 ENCODE Processing Pipeline 98a7d322706fbc5d9571d82f2bf90fb8 https://www.encodeproject.org/files/ENCFF778JBR/@@download/ENCFF778JBR.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF287DOM bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF524BAT, ENCFF806TVZ 896151362 ENCODE Processing Pipeline d518c66327685ded74a65b80862c45b1 https://www.encodeproject.org/files/ENCFF287DOM/@@download/ENCFF287DOM.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF970DRN bam unfiltered alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 1062789295 ENCODE Processing Pipeline c7d8ed6edc87bc4ac120d41372f90ec5 https://www.encodeproject.org/files/ENCFF970DRN/@@download/ENCFF970DRN.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF160VYC bam unfiltered alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 1193783116 ENCODE Processing Pipeline faf0d56cb09e91de85097ba2a986c1aa https://www.encodeproject.org/files/ENCFF160VYC/@@download/ENCFF160VYC.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF090OZS bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 799264007 ENCODE Processing Pipeline fcdcce95bdb388d29eecd53730dc4c1a https://www.encodeproject.org/files/ENCFF090OZS/@@download/ENCFF090OZS.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF604FDV bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 896015737 ENCODE Processing Pipeline 90ac4307f906cd7895038a40865dd7e3 https://www.encodeproject.org/files/ENCFF604FDV/@@download/ENCFF604FDV.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF126UDE bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 382105302 ENCODE Processing Pipeline b827997367e40e41f456a3564f587972 https://www.encodeproject.org/files/ENCFF126UDE/@@download/ENCFF126UDE.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF398YKS bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 369157395 ENCODE Processing Pipeline 2635ae0be7e53be021dcdf55e01cea19 https://www.encodeproject.org/files/ENCFF398YKS/@@download/ENCFF398YKS.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF693XGU bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 351548770 ENCODE Processing Pipeline 76b7683aefc747e006e1b30a1f847f4d https://www.encodeproject.org/files/ENCFF693XGU/@@download/ENCFF693XGU.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF571UHJ bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 479506383 ENCODE Processing Pipeline 8a25297bb71f458c204176f0cd3e5bba https://www.encodeproject.org/files/ENCFF571UHJ/@@download/ENCFF571UHJ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF518PVA bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 306544838 ENCODE Processing Pipeline 78f2baeaa290a2b0e8c2496d31bb0a14 https://www.encodeproject.org/files/ENCFF518PVA/@@download/ENCFF518PVA.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF176KNA bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 545676684 ENCODE Processing Pipeline 2a7fb8a9637be881ae5037986a11a57e https://www.encodeproject.org/files/ENCFF176KNA/@@download/ENCFF176KNA.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF452VPT bed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 4998506 ENCODE Processing Pipeline cb30aeeb980d960a9a23f5751bc52a72 https://www.encodeproject.org/files/ENCFF452VPT/@@download/ENCFF452VPT.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF179TEC bigBed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF040OPZ 10825071 ENCODE Processing Pipeline 710fb36ddd7355fe8cf95fb40a22f835 https://www.encodeproject.org/files/ENCFF179TEC/@@download/ENCFF179TEC.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF161NMS bigBed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF095TOF 11312117 ENCODE Processing Pipeline 3c0475e551bdaf6cd7be45e4ed1d0de9 https://www.encodeproject.org/files/ENCFF161NMS/@@download/ENCFF161NMS.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF095TOF bed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 5391322 ENCODE Processing Pipeline 5e514aad8fe950ef7f32752b7837de05 https://www.encodeproject.org/files/ENCFF095TOF/@@download/ENCFF095TOF.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF890HAR bigBed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 ENCFF452VPT 10988866 ENCODE Processing Pipeline b709d32233c902f3b54e1a09755b4a25 https://www.encodeproject.org/files/ENCFF890HAR/@@download/ENCFF890HAR.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF482ZII bigBed narrowPeak conservative idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF917TNQ 1402284 ENCODE Processing Pipeline ae870cc253b05473ddb3233878737774 https://www.encodeproject.org/files/ENCFF482ZII/@@download/ENCFF482ZII.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF040OPZ bed narrowPeak peaks and background as input for IDR ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 4698771 ENCODE Processing Pipeline f9d362830255d489314a68eb94d202ae https://www.encodeproject.org/files/ENCFF040OPZ/@@download/ENCFF040OPZ.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF618DXI bed narrowPeak optimal idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF040OPZ, ENCFF095TOF, ENCFF452VPT, ENCFF547MET 886626 ENCODE Processing Pipeline fd91f0be18f3e41b463bbde7375a0198 https://www.encodeproject.org/files/ENCFF618DXI/@@download/ENCFF618DXI.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF917TNQ bed narrowPeak conservative idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF040OPZ, ENCFF095TOF, ENCFF452VPT, ENCFF547MET 855879 ENCODE Processing Pipeline e9b5bb69c5b76d2336b460f6827783a7 https://www.encodeproject.org/files/ENCFF917TNQ/@@download/ENCFF917TNQ.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF463PEK bigBed narrowPeak optimal idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1, 2 ENCFF618DXI 1441434 ENCODE Processing Pipeline 1de8f643a24cc3901c8f4db3fba11f25 https://www.encodeproject.org/files/ENCFF463PEK/@@download/ENCFF463PEK.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF001KRL bigBed broadPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYP 370036 Bing Ren, UCSD 420654f4e3671c41af8594e0e6ce1c1e https://www.encodeproject.org/files/ENCFF001KRL/@@download/ENCFF001KRL.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001KRM bam alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KRU 283980456 Bing Ren, UCSD 8b04c65bd86a6c5687184e0a441b0177 https://www.encodeproject.org/files/ENCFF001KRM/@@download/ENCFF001KRM.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001KRN bam alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KRY 458499552 Bing Ren, UCSD b3b6cc25d2c89cd0d70cde4203736d09 https://www.encodeproject.org/files/ENCFF001KRN/@@download/ENCFF001KRN.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001KRO bigWig signal ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KRM, ENCFF001KRN 15362437 Bing Ren, UCSD 00b1836245d11a319299b79ad2435f62 https://www.encodeproject.org/files/ENCFF001KRO/@@download/ENCFF001KRO.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001KRU fastq reads ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 350882224 Bing Ren, UCSD 482c3b72e95d5cb2d0fadbb8e094d8ca https://www.encodeproject.org/files/ENCFF001KRU/@@download/ENCFF001KRU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSH/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001KRY fastq reads ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 574091158 Bing Ren, UCSD 9711fc275f3ce2cc752e926c775b5a51 https://www.encodeproject.org/files/ENCFF001KRY/@@download/ENCFF001KRY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSJ/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001XYP bed broadPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KRM, ENCFF001KRN 246927 Bing Ren, UCSD cd4e9a622b919a28ce8aa4e0294a29f2 https://www.encodeproject.org/files/ENCFF001XYP/@@download/ENCFF001XYP.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF051YGH bam unfiltered alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRY, ENCFF018NEO 529981221 ENCODE Processing Pipeline 9db7811b7fcedf48e44846dae83ddce1 https://www.encodeproject.org/files/ENCFF051YGH/@@download/ENCFF051YGH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF759YXI bam unfiltered alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRU, ENCFF018NEO 342801484 ENCODE Processing Pipeline 16a47aaf63bfbb5505edcc6568883016 https://www.encodeproject.org/files/ENCFF759YXI/@@download/ENCFF759YXI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF446KMO bam alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRY, ENCFF018NEO 349383568 ENCODE Processing Pipeline cac54378fab14a75673ca816dffb2934 https://www.encodeproject.org/files/ENCFF446KMO/@@download/ENCFF446KMO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF495YQS bam alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRU, ENCFF018NEO 232604418 ENCODE Processing Pipeline fc8a67fe244697cc1abceb734f1a14a6 https://www.encodeproject.org/files/ENCFF495YQS/@@download/ENCFF495YQS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF645IMB bed narrowPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF371CWA, ENCFF495YQS, ENCFF543ZOX 617296 ENCODE Processing Pipeline 322fb778ab2bd0c6a92a572754b7814f https://www.encodeproject.org/files/ENCFF645IMB/@@download/ENCFF645IMB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF997UVR bed narrowPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF446KMO, ENCFF543ZOX 667900 ENCODE Processing Pipeline 864d840c26d9462b0a9ee569f0897090 https://www.encodeproject.org/files/ENCFF997UVR/@@download/ENCFF997UVR.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF724GJA bigBed narrowPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF645IMB 1953202 ENCODE Processing Pipeline bf65efe06091aec3e8bd0f86e4e5b1e2 https://www.encodeproject.org/files/ENCFF724GJA/@@download/ENCFF724GJA.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF857WCD bed narrowPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF371CWA, ENCFF446KMO, ENCFF495YQS, ENCFF543ZOX 705812 ENCODE Processing Pipeline a86a55d327024f10f0ee064f5ec4b98c https://www.encodeproject.org/files/ENCFF857WCD/@@download/ENCFF857WCD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF045RUJ bigBed narrowPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF997UVR 2047951 ENCODE Processing Pipeline fd9332197c68edcd518cde12d622b7bd https://www.encodeproject.org/files/ENCFF045RUJ/@@download/ENCFF045RUJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF622OLN bigWig signal p-value ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF371CWA, ENCFF495YQS, ENCFF543ZOX 303153428 ENCODE Processing Pipeline 7c833a4b63d2f62f5f67ad4e419a76aa https://www.encodeproject.org/files/ENCFF622OLN/@@download/ENCFF622OLN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF505RJL bigWig signal p-value ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF446KMO, ENCFF543ZOX 316700366 ENCODE Processing Pipeline cbf7c9a42eae8bae5f4cd4504cbc17d8 https://www.encodeproject.org/files/ENCFF505RJL/@@download/ENCFF505RJL.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF273NPI bigBed narrowPeak peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF857WCD 2099627 ENCODE Processing Pipeline 464df264252e5004cd85668a6bdac86a https://www.encodeproject.org/files/ENCFF273NPI/@@download/ENCFF273NPI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF856ICT bigWig signal p-value ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF371CWA, ENCFF446KMO, ENCFF495YQS, ENCFF543ZOX 358847995 ENCODE Processing Pipeline 24fe00f54fd4d0978a54496fae6528ec https://www.encodeproject.org/files/ENCFF856ICT/@@download/ENCFF856ICT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF765JFB bigWig fold change over control ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF371CWA, ENCFF495YQS, ENCFF543ZOX 111315190 ENCODE Processing Pipeline 1f1bbc55e612f1e1ee477e22f47a8b91 https://www.encodeproject.org/files/ENCFF765JFB/@@download/ENCFF765JFB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF319DPR bigWig fold change over control ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF446KMO, ENCFF543ZOX 114219479 ENCODE Processing Pipeline 2c3f83e54677aa522f3454411efad794 https://www.encodeproject.org/files/ENCFF319DPR/@@download/ENCFF319DPR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF402XCT bed narrowPeak replicated peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF645IMB, ENCFF857WCD, ENCFF997UVR 822564 ENCODE Processing Pipeline bf7cfcad3a1f282d8aeb99f387e9c258 https://www.encodeproject.org/files/ENCFF402XCT/@@download/ENCFF402XCT.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF820PKM bigBed narrowPeak replicated peaks ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF402XCT 1835206 ENCODE Processing Pipeline d90c3a67600a35f47bdd641df50d94b1 https://www.encodeproject.org/files/ENCFF820PKM/@@download/ENCFF820PKM.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF069XTE bigWig fold change over control ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF371CWA, ENCFF446KMO, ENCFF495YQS, ENCFF543ZOX 179761780 ENCODE Processing Pipeline 7ad506854486463b506409455cfd4e45 https://www.encodeproject.org/files/ENCFF069XTE/@@download/ENCFF069XTE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001NLD bigBed narrowPeak peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIO 966293 Michael Snyder, Stanford 1989f8ea5538fabd79bf799aa46dda9a https://www.encodeproject.org/files/ENCFF001NLD/@@download/ENCFF001NLD.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLE bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NLV 238063379 Michael Snyder, Stanford 1f33102573e9032c9ab6c17457e25463 https://www.encodeproject.org/files/ENCFF001NLE/@@download/ENCFF001NLE.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLF bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NLX 218729201 Michael Snyder, Stanford 593d0a0c1be47abb5cabf3ca122b857a https://www.encodeproject.org/files/ENCFF001NLF/@@download/ENCFF001NLF.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLG bigWig signal ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLE, ENCFF001NLF 212902878 Michael Snyder, Stanford 126090635ddfdc4100f1a7e9a6812fe3 https://www.encodeproject.org/files/ENCFF001NLG/@@download/ENCFF001NLG.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLV fastq reads ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 911002490 Michael Snyder, Stanford 371e8f7219f38236fef86f25caa494d4 https://www.encodeproject.org/files/ENCFF001NLV/@@download/ENCFF001NLV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, inconsistent target of control experiment, low read depth ENCFF001NLX fastq reads ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 889716228 Michael Snyder, Stanford 17b1fadacffa05627612b33aa1a25391 https://www.encodeproject.org/files/ENCFF001NLX/@@download/ENCFF001NLX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, inconsistent target of control experiment, low read depth ENCFF001YIO bed narrowPeak peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLE, ENCFF001NLF 376246 Michael Snyder, Stanford 5324416eaa9fdde3a11aac161d0186cc https://www.encodeproject.org/files/ENCFF001YIO/@@download/ENCFF001YIO.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF871UGK bam unfiltered alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLX, ENCFF018NEO 984041686 ENCODE Processing Pipeline dffa1051177746bba801d109d786d8d0 https://www.encodeproject.org/files/ENCFF871UGK/@@download/ENCFF871UGK.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF710MHB bam unfiltered alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLV, ENCFF018NEO 1012994423 ENCODE Processing Pipeline 0d6ddb101dcbc078d386f6d17e47abca https://www.encodeproject.org/files/ENCFF710MHB/@@download/ENCFF710MHB.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF483OCA bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLX, ENCFF018NEO 491617440 ENCODE Processing Pipeline e16a61f83024852e70e71d7907c1a5a4 https://www.encodeproject.org/files/ENCFF483OCA/@@download/ENCFF483OCA.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF539ZGP bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLV, ENCFF018NEO 516170173 ENCODE Processing Pipeline 03477dc8b3bd720654a63c7d8aedd892 https://www.encodeproject.org/files/ENCFF539ZGP/@@download/ENCFF539ZGP.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF172SYN bigWig signal p-value ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF539ZGP 267531623 ENCODE Processing Pipeline 41b688506c615695a422d08798e8382d https://www.encodeproject.org/files/ENCFF172SYN/@@download/ENCFF172SYN.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF281ICM bigWig signal p-value ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF483OCA, ENCFF528WZN 273435153 ENCODE Processing Pipeline 6c99b3991b2590d0931027b869e39d7f https://www.encodeproject.org/files/ENCFF281ICM/@@download/ENCFF281ICM.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF950WZW bigWig signal p-value ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF483OCA, ENCFF528WZN, ENCFF539ZGP 361528842 ENCODE Processing Pipeline 5b41ab85a32c9f9e352e0aab769fabef https://www.encodeproject.org/files/ENCFF950WZW/@@download/ENCFF950WZW.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF301KFO bigWig fold change over control ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF539ZGP 225230901 ENCODE Processing Pipeline 79e7ac28b45ba8aae5a710e206e1feb5 https://www.encodeproject.org/files/ENCFF301KFO/@@download/ENCFF301KFO.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF497BSD bigWig fold change over control ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF483OCA, ENCFF528WZN 220626485 ENCODE Processing Pipeline db7ac9c4f4fa6ea9a63d146d068f17a1 https://www.encodeproject.org/files/ENCFF497BSD/@@download/ENCFF497BSD.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF111ZPI bigWig fold change over control ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF483OCA, ENCFF528WZN, ENCFF539ZGP 375855331 ENCODE Processing Pipeline 69a7d7f3b3753fc9db9b97d3c71b7f2a https://www.encodeproject.org/files/ENCFF111ZPI/@@download/ENCFF111ZPI.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF944CTC bed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF539ZGP 4849164 ENCODE Processing Pipeline 7a9f395dc43e22d36d941789094931f5 https://www.encodeproject.org/files/ENCFF944CTC/@@download/ENCFF944CTC.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF037DYV bed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF483OCA, ENCFF528WZN 4850290 ENCODE Processing Pipeline 0fc93091567e22c2667f1df078ca8037 https://www.encodeproject.org/files/ENCFF037DYV/@@download/ENCFF037DYV.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF818JAH bigBed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF944CTC 10544305 ENCODE Processing Pipeline a7d30ce70c9a8f405bc2a3690e2c871f https://www.encodeproject.org/files/ENCFF818JAH/@@download/ENCFF818JAH.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF480KIU bed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF483OCA, ENCFF528WZN, ENCFF539ZGP 5363859 ENCODE Processing Pipeline 174608f2c2b33152357a4564278e820a https://www.encodeproject.org/files/ENCFF480KIU/@@download/ENCFF480KIU.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF483CLR bigBed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF037DYV 10462641 ENCODE Processing Pipeline 147e4a49256de3326e53018064083253 https://www.encodeproject.org/files/ENCFF483CLR/@@download/ENCFF483CLR.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF257AVB bed narrowPeak conservative idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF037DYV, ENCFF480KIU, ENCFF547MET, ENCFF944CTC 399082 ENCODE Processing Pipeline e37c41c3664a89f7b1640078080f43bc https://www.encodeproject.org/files/ENCFF257AVB/@@download/ENCFF257AVB.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF526IME bigBed narrowPeak peaks and background as input for IDR ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF480KIU 13035048 ENCODE Processing Pipeline 994c132902f03fc503dc91be7c1f2583 https://www.encodeproject.org/files/ENCFF526IME/@@download/ENCFF526IME.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF245RMR bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF257AVB 793801 ENCODE Processing Pipeline fbfb43e2118cee17e4f7d9dd2d037042 https://www.encodeproject.org/files/ENCFF245RMR/@@download/ENCFF245RMR.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF965MMO bed narrowPeak optimal idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF037DYV, ENCFF480KIU, ENCFF547MET, ENCFF944CTC 414158 ENCODE Processing Pipeline f6eb7b5bd474f94cde2c65c4b5ca49f0 https://www.encodeproject.org/files/ENCFF965MMO/@@download/ENCFF965MMO.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF225BEL bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF965MMO 816267 ENCODE Processing Pipeline 50f67a5693435fd4cc707bda3a4d7752 https://www.encodeproject.org/files/ENCFF225BEL/@@download/ENCFF225BEL.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF002BWC fastq reads ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1309871946 Bing Ren, UCSD 44d16164d78bef5afa3c558cab20c4bb SRA:SRR3652089 https://www.encodeproject.org/files/ENCFF002BWC/@@download/ENCFF002BWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXM/ released low read length, control low read depth ENCFF002BWD fastq reads ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1410298376 Bing Ren, UCSD 11f47525073099559cd82c32741a7d35 SRA:SRR3652088 https://www.encodeproject.org/files/ENCFF002BWD/@@download/ENCFF002BWD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXL/ released low read length, control low read depth ENCFF176AAS bam alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BWD, ENCFF806TVZ 1185915389 ENCODE Processing Pipeline 92f3c88bd373c9333fdc917424bb3def https://www.encodeproject.org/files/ENCFF176AAS/@@download/ENCFF176AAS.bam mm10-minimal archived low read length, control low read depth ENCFF847VAG bam alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002BWC, ENCFF806TVZ 1108612109 ENCODE Processing Pipeline d09f4fac5abd2d1a60198c4ba2509b6b https://www.encodeproject.org/files/ENCFF847VAG/@@download/ENCFF847VAG.bam mm10-minimal archived low read length, control low read depth ENCFF264EXG bed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF176AAS, ENCFF395ALO, ENCFF956BKJ 1140780 ENCODE Processing Pipeline efdfd1cedd70119810b4b2180200e6cc https://www.encodeproject.org/files/ENCFF264EXG/@@download/ENCFF264EXG.bed.gz mm10-minimal archived low read length, control low read depth ENCFF561QFL bed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF176AAS, ENCFF395ALO, ENCFF847VAG, ENCFF956BKJ 992991 ENCODE Processing Pipeline 9477e0a6d6c0e74e5d127d2683177d64 https://www.encodeproject.org/files/ENCFF561QFL/@@download/ENCFF561QFL.bed.gz mm10-minimal archived low read length, control low read depth ENCFF992NKP bigBed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF832AYR 3558540 ENCODE Processing Pipeline 166a428d65207e346482d439687441e3 https://www.encodeproject.org/files/ENCFF992NKP/@@download/ENCFF992NKP.bigBed mm10-minimal archived low read length, control low read depth ENCFF248DPL bigWig signal p-value ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF176AAS, ENCFF395ALO, ENCFF956BKJ 486437733 ENCODE Processing Pipeline ef18c053e1ffb2adf5de0947d04b1bce https://www.encodeproject.org/files/ENCFF248DPL/@@download/ENCFF248DPL.bigWig mm10-minimal archived low read length, control low read depth ENCFF832AYR bed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF847VAG, ENCFF956BKJ 1160533 ENCODE Processing Pipeline 5906c4ed6f0e97ee38a3ad6c5d935f03 https://www.encodeproject.org/files/ENCFF832AYR/@@download/ENCFF832AYR.bed.gz mm10-minimal archived low read length, control low read depth ENCFF883QWD bigBed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF561QFL 3033775 ENCODE Processing Pipeline 28965601c9cf948e7c53150bcb10f706 https://www.encodeproject.org/files/ENCFF883QWD/@@download/ENCFF883QWD.bigBed mm10-minimal archived low read length, control low read depth ENCFF732WOD bigBed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF264EXG 3484711 ENCODE Processing Pipeline 5cf6e536f148c83b73d197af0d654e40 https://www.encodeproject.org/files/ENCFF732WOD/@@download/ENCFF732WOD.bigBed mm10-minimal archived low read length, control low read depth ENCFF480YOI bigWig fold change over control ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF847VAG, ENCFF956BKJ 478849123 ENCODE Processing Pipeline be9bd0f8d11f0d34ea9c6f46c743766e https://www.encodeproject.org/files/ENCFF480YOI/@@download/ENCFF480YOI.bigWig mm10-minimal archived low read length, control low read depth ENCFF640ARM bigWig signal p-value ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF395ALO, ENCFF847VAG, ENCFF956BKJ 452568786 ENCODE Processing Pipeline 0d3a23117759f393ce8ec09fab650321 https://www.encodeproject.org/files/ENCFF640ARM/@@download/ENCFF640ARM.bigWig mm10-minimal archived low read length, control low read depth ENCFF899OIC bigWig signal p-value ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF176AAS, ENCFF395ALO, ENCFF847VAG, ENCFF956BKJ 517804413 ENCODE Processing Pipeline c05887ee8346da1cf8dc1f90502a0be7 https://www.encodeproject.org/files/ENCFF899OIC/@@download/ENCFF899OIC.bigWig mm10-minimal archived low read length, control low read depth ENCFF931WJB bigWig fold change over control ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF176AAS, ENCFF395ALO, ENCFF956BKJ 476552195 ENCODE Processing Pipeline d2c502bf901296b04a8d2931aaef68bd https://www.encodeproject.org/files/ENCFF931WJB/@@download/ENCFF931WJB.bigWig mm10-minimal archived low read length, control low read depth ENCFF321HQR bigBed narrowPeak replicated peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF884MHM 2803047 ENCODE Processing Pipeline 1df40cf3c55c62c5c713dcf3794558bd https://www.encodeproject.org/files/ENCFF321HQR/@@download/ENCFF321HQR.bigBed mm10-minimal archived low read length, control low read depth ENCFF057INF bigWig fold change over control ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF176AAS, ENCFF395ALO, ENCFF847VAG, ENCFF956BKJ 766927497 ENCODE Processing Pipeline 15084caa56da1c2a984accdd85f9954f https://www.encodeproject.org/files/ENCFF057INF/@@download/ENCFF057INF.bigWig mm10-minimal archived low read length, control low read depth ENCFF884MHM bed narrowPeak replicated peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF264EXG, ENCFF561QFL, ENCFF832AYR 1193480 ENCODE Processing Pipeline d86914d3d541ff1c5360924764bcec2b https://www.encodeproject.org/files/ENCFF884MHM/@@download/ENCFF884MHM.bed.gz mm10-minimal archived low read length, control low read depth ENCFF657PCA bam unfiltered alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWC, ENCFF018NEO 1670738397 ENCODE Processing Pipeline 9e14885dbe56832b5e956357849a9000 https://www.encodeproject.org/files/ENCFF657PCA/@@download/ENCFF657PCA.bam mm10 released low read length, control low read depth ENCFF790JOW bam unfiltered alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWD, ENCFF018NEO 1785735069 ENCODE Processing Pipeline eda6f9fb6580997d37d0501475235d64 https://www.encodeproject.org/files/ENCFF790JOW/@@download/ENCFF790JOW.bam mm10 released low read length, control low read depth ENCFF717YIV bam alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWC, ENCFF018NEO 1108392086 ENCODE Processing Pipeline fcc69870489a99671e5e0631a5d920a9 https://www.encodeproject.org/files/ENCFF717YIV/@@download/ENCFF717YIV.bam mm10 released low read length, control low read depth ENCFF930YWV bam alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWD, ENCFF018NEO 1185662656 ENCODE Processing Pipeline 85a1c3693bb847debd3045333774d0b4 https://www.encodeproject.org/files/ENCFF930YWV/@@download/ENCFF930YWV.bam mm10 released low read length, control low read depth ENCFF273YFB bed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF930YWV 1141204 ENCODE Processing Pipeline 9f23f51831422fb58d0ce8b742c8b6c3 https://www.encodeproject.org/files/ENCFF273YFB/@@download/ENCFF273YFB.bed.gz mm10 released low read length, control low read depth ENCFF782LNE bed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF717YIV 700418 ENCODE Processing Pipeline 5102134165f7cb2e1d31dc0527b84172 https://www.encodeproject.org/files/ENCFF782LNE/@@download/ENCFF782LNE.bed.gz mm10 released low read length, control low read depth ENCFF339GZR bed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF717YIV, ENCFF930YWV 993436 ENCODE Processing Pipeline b00ea4990d6ad8f8851caf5034430fc1 https://www.encodeproject.org/files/ENCFF339GZR/@@download/ENCFF339GZR.bed.gz mm10 released low read length, control low read depth ENCFF328GMC bigBed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF782LNE 2256412 ENCODE Processing Pipeline 4c4536796f493eb8adacd9042e27d13e https://www.encodeproject.org/files/ENCFF328GMC/@@download/ENCFF328GMC.bigBed mm10 released low read length, control low read depth ENCFF935YZL bigBed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF273YFB 3486783 ENCODE Processing Pipeline 5b2db221bbe2ec4f99644caa24e6b5de https://www.encodeproject.org/files/ENCFF935YZL/@@download/ENCFF935YZL.bigBed mm10 released low read length, control low read depth ENCFF023NLL bigBed narrowPeak peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF339GZR 3036787 ENCODE Processing Pipeline 4d558f425077a4c537a06097af32e9e2 https://www.encodeproject.org/files/ENCFF023NLL/@@download/ENCFF023NLL.bigBed mm10 released low read length, control low read depth ENCFF483YDY bigWig signal p-value ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF930YWV 486330080 ENCODE Processing Pipeline c1587399507f83cf15cc5d74e9c93b6e https://www.encodeproject.org/files/ENCFF483YDY/@@download/ENCFF483YDY.bigWig mm10 released low read length, control low read depth ENCFF088YZM bigWig signal p-value ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF717YIV 282820919 ENCODE Processing Pipeline 336180ec43168535ed9d66391d58e83b https://www.encodeproject.org/files/ENCFF088YZM/@@download/ENCFF088YZM.bigWig mm10 released low read length, control low read depth ENCFF746JVZ bigWig signal p-value ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF717YIV, ENCFF930YWV 517885573 ENCODE Processing Pipeline a3799301b9af6d6fdcf3d9b4d1736f73 https://www.encodeproject.org/files/ENCFF746JVZ/@@download/ENCFF746JVZ.bigWig mm10 released low read length, control low read depth ENCFF351IJQ bigWig fold change over control ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF930YWV 476860113 ENCODE Processing Pipeline 72a7b20fb56b3b58608251e9bf214a9b https://www.encodeproject.org/files/ENCFF351IJQ/@@download/ENCFF351IJQ.bigWig mm10 released low read length, control low read depth ENCFF477JSO bigWig fold change over control ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF488PXJ, ENCFF717YIV 383941895 ENCODE Processing Pipeline e83e1ec9e3bbb2524d77855743b6d70f https://www.encodeproject.org/files/ENCFF477JSO/@@download/ENCFF477JSO.bigWig mm10 released low read length, control low read depth ENCFF826KEG bigWig fold change over control ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF488PXJ, ENCFF717YIV, ENCFF930YWV 765665163 ENCODE Processing Pipeline f6d1832c9f8486ed29d685d14481d3bb https://www.encodeproject.org/files/ENCFF826KEG/@@download/ENCFF826KEG.bigWig mm10 released low read length, control low read depth ENCFF378OWA bed narrowPeak replicated peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF273YFB, ENCFF339GZR, ENCFF782LNE 1157619 ENCODE Processing Pipeline 26dcfe5a239e04efbd2484b884ada291 https://www.encodeproject.org/files/ENCFF378OWA/@@download/ENCFF378OWA.bed.gz mm10 released low read length, control low read depth ENCFF221ECI bigBed narrowPeak replicated peaks ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF378OWA 2734477 ENCODE Processing Pipeline 7975c5040f5d50e7f731eaeb0ad6e52c https://www.encodeproject.org/files/ENCFF221ECI/@@download/ENCFF221ECI.bigBed mm10 released low read length, control low read depth ENCFF002ESE fastq reads ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 391786609 Bing Ren, UCSD e1a98f327af617e19318ee2b0cf6075d SRA:SRR3652527 https://www.encodeproject.org/files/ENCFF002ESE/@@download/ENCFF002ESE.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXU/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002ESF fastq reads ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 768250483 Bing Ren, UCSD 448e223f0506d058f634c7a719db7fed SRA:SRR3652529 https://www.encodeproject.org/files/ENCFF002ESF/@@download/ENCFF002ESF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXS/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF066LKK fastq reads ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 961472856 Bing Ren, UCSD 4af3e39574692e9ac848bd7757046d43 SRA:SRR3652528 https://www.encodeproject.org/files/ENCFF066LKK/@@download/ENCFF066LKK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXU/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF254AAJ fastq reads ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 891558799 Bing Ren, UCSD e04d9eb9bf624b218decb3413e41cfa6 SRA:SRR3652530 https://www.encodeproject.org/files/ENCFF254AAJ/@@download/ENCFF254AAJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXS/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF188ZIC bam alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESE, ENCFF066LKK, ENCFF806TVZ 1202281311 ENCODE Processing Pipeline c11b706c4c505c3652f990410dfaf9cc https://www.encodeproject.org/files/ENCFF188ZIC/@@download/ENCFF188ZIC.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF733OYJ bam alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESF, ENCFF254AAJ, ENCFF806TVZ 1532120435 ENCODE Processing Pipeline d44b17edcdf25e0ab018e53e973dadba https://www.encodeproject.org/files/ENCFF733OYJ/@@download/ENCFF733OYJ.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF226BYW bed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF733OYJ 1024720 ENCODE Processing Pipeline edabeb80e620175d80db7854c1699dda https://www.encodeproject.org/files/ENCFF226BYW/@@download/ENCFF226BYW.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF713WQF bed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF188ZIC, ENCFF532IQU, ENCFF540VMM 1457474 ENCODE Processing Pipeline 9675bf11ef7b9bf4ead07c2b5829cffb https://www.encodeproject.org/files/ENCFF713WQF/@@download/ENCFF713WQF.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF765WND bed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF188ZIC, ENCFF532IQU, ENCFF540VMM, ENCFF733OYJ 1117549 ENCODE Processing Pipeline 75043935f3a9707bed8be3f1d6fd64cb https://www.encodeproject.org/files/ENCFF765WND/@@download/ENCFF765WND.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF576QFC bigWig signal p-value ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF733OYJ 673710334 ENCODE Processing Pipeline 9301985f545732761e6038882b0b8a6b https://www.encodeproject.org/files/ENCFF576QFC/@@download/ENCFF576QFC.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF434BHV bigWig signal p-value ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF188ZIC, ENCFF532IQU, ENCFF540VMM 531331097 ENCODE Processing Pipeline 831906c8a303f9c99833c5154e5a5783 https://www.encodeproject.org/files/ENCFF434BHV/@@download/ENCFF434BHV.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF617NGN bigBed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF713WQF 3035136 ENCODE Processing Pipeline 6c76be2f1e95cd4bc278eb67c3dd335a https://www.encodeproject.org/files/ENCFF617NGN/@@download/ENCFF617NGN.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF335XIC bigBed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF226BYW 2337656 ENCODE Processing Pipeline 8935de0e911f0f6dbb894c4739285813 https://www.encodeproject.org/files/ENCFF335XIC/@@download/ENCFF335XIC.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF546ELC bigBed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF765WND 2909543 ENCODE Processing Pipeline 23cbdfa6ac0079827452b7d4c794beba https://www.encodeproject.org/files/ENCFF546ELC/@@download/ENCFF546ELC.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF848EZX bigBed narrowPeak replicated peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF194TAD 1653356 ENCODE Processing Pipeline 9cc273186420576de0d8aa20a16a0147 https://www.encodeproject.org/files/ENCFF848EZX/@@download/ENCFF848EZX.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF389EIW bigWig signal p-value ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF188ZIC, ENCFF532IQU, ENCFF540VMM, ENCFF733OYJ 857939934 ENCODE Processing Pipeline 6a00367ad39354967db85528005dd684 https://www.encodeproject.org/files/ENCFF389EIW/@@download/ENCFF389EIW.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF502RGW bigWig fold change over control ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF532IQU, ENCFF540VMM, ENCFF733OYJ 728420457 ENCODE Processing Pipeline bc00353545510af3ae24acaa15b5bb37 https://www.encodeproject.org/files/ENCFF502RGW/@@download/ENCFF502RGW.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF117ZQG bigWig fold change over control ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF188ZIC, ENCFF532IQU, ENCFF540VMM 602467931 ENCODE Processing Pipeline 4eda18ffab6e4fc190bcbc7ce4223a37 https://www.encodeproject.org/files/ENCFF117ZQG/@@download/ENCFF117ZQG.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF227DPD bigWig fold change over control ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF188ZIC, ENCFF532IQU, ENCFF540VMM, ENCFF733OYJ 965241459 ENCODE Processing Pipeline 72fe8a837f7c2db4cc012ff78f1df986 https://www.encodeproject.org/files/ENCFF227DPD/@@download/ENCFF227DPD.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF194TAD bed narrowPeak replicated peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF226BYW, ENCFF713WQF, ENCFF765WND 757487 ENCODE Processing Pipeline adfb2269cddcb8156a7764701033dcc8 https://www.encodeproject.org/files/ENCFF194TAD/@@download/ENCFF194TAD.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF186WJD bam alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESE, ENCFF018NEO, ENCFF066LKK 997389741 ENCODE Processing Pipeline 9c36e10dbb2b8d14ca90c4b99bab738d https://www.encodeproject.org/files/ENCFF186WJD/@@download/ENCFF186WJD.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF034UBX bam unfiltered alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESE, ENCFF018NEO, ENCFF066LKK 1472693194 ENCODE Processing Pipeline 0d65787f2043d93e892e41c1a284aaa4 https://www.encodeproject.org/files/ENCFF034UBX/@@download/ENCFF034UBX.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF150UYK bam unfiltered alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESF, ENCFF018NEO, ENCFF254AAJ 1914953333 ENCODE Processing Pipeline 44b3ba739a40ec1681731b55317d2a8a https://www.encodeproject.org/files/ENCFF150UYK/@@download/ENCFF150UYK.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF419CLC bam alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESF, ENCFF018NEO, ENCFF254AAJ 1319044784 ENCODE Processing Pipeline 82042473cad2ec4b8862cab9bb186723 https://www.encodeproject.org/files/ENCFF419CLC/@@download/ENCFF419CLC.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF432GWA bed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF419CLC, ENCFF742VJP 1066812 ENCODE Processing Pipeline 9628b00ac305c3a92fc9bf318a45e7a8 https://www.encodeproject.org/files/ENCFF432GWA/@@download/ENCFF432GWA.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF259IOA bed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF186WJD, ENCFF394IRO, ENCFF742VJP 1397195 ENCODE Processing Pipeline 2b6540ff9b9930a740d75aa69f569a5e https://www.encodeproject.org/files/ENCFF259IOA/@@download/ENCFF259IOA.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF550JIJ bed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF186WJD, ENCFF394IRO, ENCFF419CLC, ENCFF742VJP 1103085 ENCODE Processing Pipeline ff2b9e1473d09371a5955ccb4e37a89f https://www.encodeproject.org/files/ENCFF550JIJ/@@download/ENCFF550JIJ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF876JOR bigBed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF432GWA 2432181 ENCODE Processing Pipeline 0b64ff4697295a6963dcdd7267bcddbd https://www.encodeproject.org/files/ENCFF876JOR/@@download/ENCFF876JOR.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF229CLL bigBed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF259IOA 2923122 ENCODE Processing Pipeline a33aec82fecf0aa561cacbfabe5457c1 https://www.encodeproject.org/files/ENCFF229CLL/@@download/ENCFF229CLL.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF753TMA bigBed narrowPeak peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF550JIJ 2874739 ENCODE Processing Pipeline af9f0f13c2fff3f0758e1fd674a09643 https://www.encodeproject.org/files/ENCFF753TMA/@@download/ENCFF753TMA.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF100QDI bigWig signal p-value ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF419CLC, ENCFF742VJP 593102819 ENCODE Processing Pipeline d89251d30c9aa2c0a676e208a65878b4 https://www.encodeproject.org/files/ENCFF100QDI/@@download/ENCFF100QDI.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF691PUC bigWig signal p-value ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF186WJD, ENCFF394IRO, ENCFF742VJP 539607232 ENCODE Processing Pipeline 50cb4af674f50a8d4d40ee6ef070fd72 https://www.encodeproject.org/files/ENCFF691PUC/@@download/ENCFF691PUC.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF055XVD bigWig signal p-value ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF186WJD, ENCFF394IRO, ENCFF419CLC, ENCFF742VJP 873366954 ENCODE Processing Pipeline ba8d6a7288b72c0c22c69087dfc322ef https://www.encodeproject.org/files/ENCFF055XVD/@@download/ENCFF055XVD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF963PZU bigWig fold change over control ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF394IRO, ENCFF419CLC, ENCFF742VJP 710994477 ENCODE Processing Pipeline 56c214c7f2442a8b85d31b253dfa6121 https://www.encodeproject.org/files/ENCFF963PZU/@@download/ENCFF963PZU.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF014EQA bigWig fold change over control ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF186WJD, ENCFF394IRO, ENCFF742VJP 593969469 ENCODE Processing Pipeline 17de3cee7bf544fdfc8a7360b1be48ab https://www.encodeproject.org/files/ENCFF014EQA/@@download/ENCFF014EQA.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF089CJB bigWig fold change over control ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF186WJD, ENCFF394IRO, ENCFF419CLC, ENCFF742VJP 966089774 ENCODE Processing Pipeline 622c73f3a8a6d2e8bd0f238354ad3e9a https://www.encodeproject.org/files/ENCFF089CJB/@@download/ENCFF089CJB.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF758LFN bed narrowPeak replicated peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF259IOA, ENCFF432GWA, ENCFF550JIJ 738783 ENCODE Processing Pipeline a2aaba599b79fc77a03585e2809557d8 https://www.encodeproject.org/files/ENCFF758LFN/@@download/ENCFF758LFN.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF484LWR bigBed narrowPeak replicated peaks ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF758LFN 1603422 ENCODE Processing Pipeline 36184cca0750f91ce901690cc5921869 https://www.encodeproject.org/files/ENCFF484LWR/@@download/ENCFF484LWR.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF001KHR bam alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KIA 349354401 Bing Ren, UCSD eba5970ebabbfe2c422874b8b64d3f71 https://www.encodeproject.org/files/ENCFF001KHR/@@download/ENCFF001KHR.bam mm9 released low read length, control low read depth insufficient read depth ENCFF001KHS bam alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KHW 366290973 Bing Ren, UCSD dbc1b4833a8683d596c3db4a4cba0be0 https://www.encodeproject.org/files/ENCFF001KHS/@@download/ENCFF001KHS.bam mm9 released low read length, control low read depth insufficient read depth ENCFF001KHT bigBed broadPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XXI 420277 Bing Ren, UCSD ccf5add1404c98c579e6c9db830f2cf8 https://www.encodeproject.org/files/ENCFF001KHT/@@download/ENCFF001KHT.bigBed mm9 released low read length, control low read depth insufficient read depth ENCFF001KHV bigWig signal ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KHR, ENCFF001KHS 31933905 Bing Ren, UCSD 209a5323b05b5c48484c7eab3790d0b8 https://www.encodeproject.org/files/ENCFF001KHV/@@download/ENCFF001KHV.bigWig mm9 released low read length, control low read depth insufficient read depth ENCFF001KHW fastq reads ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 688934565 Bing Ren, UCSD 5047c401a216bb19623c2b8352abf12e https://www.encodeproject.org/files/ENCFF001KHW/@@download/ENCFF001KHW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released low read length, control low read depth insufficient read depth ENCFF001KIA fastq reads ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 602275027 Bing Ren, UCSD 62619d3b7bd981a2bde0125bce9c31f1 https://www.encodeproject.org/files/ENCFF001KIA/@@download/ENCFF001KIA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released low read length, control low read depth insufficient read depth ENCFF001XXI bed broadPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KHR, ENCFF001KHS 283495 Bing Ren, UCSD 31dda4564317613bd627859458d7e974 https://www.encodeproject.org/files/ENCFF001XXI/@@download/ENCFF001XXI.bed.gz mm9 released low read length, control low read depth insufficient read depth ENCFF908ETG bam unfiltered alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KIA, ENCFF018NEO 611763007 ENCODE Processing Pipeline 51393a7fcf76e8fa57d0ad8523169cb7 https://www.encodeproject.org/files/ENCFF908ETG/@@download/ENCFF908ETG.bam mm10 released low read length, control low read depth insufficient read depth ENCFF729JKD bam unfiltered alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KHW, ENCFF018NEO 703778447 ENCODE Processing Pipeline 2e5f16e2e485146a233d0fc69385edd6 https://www.encodeproject.org/files/ENCFF729JKD/@@download/ENCFF729JKD.bam mm10 released low read length, control low read depth insufficient read depth ENCFF253ODV bam alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KHW, ENCFF018NEO 369385050 ENCODE Processing Pipeline 758a5e99a3c40b9352993d24133d31b1 https://www.encodeproject.org/files/ENCFF253ODV/@@download/ENCFF253ODV.bam mm10 released low read length, control low read depth insufficient read depth ENCFF673WDW bam alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KIA, ENCFF018NEO 251829440 ENCODE Processing Pipeline 02b8c7d7cf62f5238b5166895988abe3 https://www.encodeproject.org/files/ENCFF673WDW/@@download/ENCFF673WDW.bam mm10 released low read length, control low read depth insufficient read depth ENCFF956RDD bed narrowPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF253ODV, ENCFF262EEH, ENCFF465PJQ 929864 ENCODE Processing Pipeline 599dee1d44097a8826eb6d19f73e25c7 https://www.encodeproject.org/files/ENCFF956RDD/@@download/ENCFF956RDD.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF836BEI bed narrowPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF673WDW 747287 ENCODE Processing Pipeline 6e0d839e460b58ef832302430bbbb656 https://www.encodeproject.org/files/ENCFF836BEI/@@download/ENCFF836BEI.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF687BGK bigWig signal p-value ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF673WDW 269725364 ENCODE Processing Pipeline 37d5e0bbf9ff08d2c66e6ed01cbbf71b https://www.encodeproject.org/files/ENCFF687BGK/@@download/ENCFF687BGK.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF345VFO bed narrowPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF253ODV, ENCFF262EEH, ENCFF465PJQ, ENCFF673WDW 888594 ENCODE Processing Pipeline d3d00c97224f4de45a001aa20bc82751 https://www.encodeproject.org/files/ENCFF345VFO/@@download/ENCFF345VFO.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF161GGM bigBed narrowPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF956RDD 2711850 ENCODE Processing Pipeline 6e63eb59433dda8a1bc833bdcf014cbf https://www.encodeproject.org/files/ENCFF161GGM/@@download/ENCFF161GGM.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF430DIR bigBed narrowPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF836BEI 2303822 ENCODE Processing Pipeline 5f418e5369043f914774108fbad7a579 https://www.encodeproject.org/files/ENCFF430DIR/@@download/ENCFF430DIR.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF234FED bigBed narrowPeak peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF345VFO 2579176 ENCODE Processing Pipeline abdd69852ed43f25e78d688d4210b9ae https://www.encodeproject.org/files/ENCFF234FED/@@download/ENCFF234FED.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF774NEQ bigWig fold change over control ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF253ODV, ENCFF262EEH, ENCFF465PJQ 135156024 ENCODE Processing Pipeline fe1b79bbb709aa1b601e505e0c6deb2a https://www.encodeproject.org/files/ENCFF774NEQ/@@download/ENCFF774NEQ.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF520QTP bigWig signal p-value ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF253ODV, ENCFF262EEH, ENCFF465PJQ 268134184 ENCODE Processing Pipeline bd2abac6cd3533afc7955b0517403741 https://www.encodeproject.org/files/ENCFF520QTP/@@download/ENCFF520QTP.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF792SZW bigWig signal p-value ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF253ODV, ENCFF262EEH, ENCFF465PJQ, ENCFF673WDW 302584273 ENCODE Processing Pipeline cb99a92d279291d2b2bdcbd242ef517d https://www.encodeproject.org/files/ENCFF792SZW/@@download/ENCFF792SZW.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF993MMJ bigWig fold change over control ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF673WDW 105692723 ENCODE Processing Pipeline 30d694074c1e4ae4e19a5407f8b245fa https://www.encodeproject.org/files/ENCFF993MMJ/@@download/ENCFF993MMJ.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF118SXS bigWig fold change over control ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF253ODV, ENCFF262EEH, ENCFF465PJQ, ENCFF673WDW 197020680 ENCODE Processing Pipeline af533bc292cf2907969ef33f0fa8e95c https://www.encodeproject.org/files/ENCFF118SXS/@@download/ENCFF118SXS.bigWig mm10 released low read length, control low read depth insufficient read depth ENCFF599BFW bed narrowPeak replicated peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF345VFO, ENCFF836BEI, ENCFF956RDD 916459 ENCODE Processing Pipeline 07e10fe0412807ba64684a675f6d6046 https://www.encodeproject.org/files/ENCFF599BFW/@@download/ENCFF599BFW.bed.gz mm10 released low read length, control low read depth insufficient read depth ENCFF573DOX bigBed narrowPeak replicated peaks ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF599BFW 2006722 ENCODE Processing Pipeline 7d8bdf1e4fd8768a3ebdd0e94bad1c2a https://www.encodeproject.org/files/ENCFF573DOX/@@download/ENCFF573DOX.bigBed mm10 released low read length, control low read depth insufficient read depth ENCFF002ETD fastq reads ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1186261413 Bing Ren, UCSD 8682648e3710bc53c595cb3290a072e7 SRA:SRR3652157 https://www.encodeproject.org/files/ENCFF002ETD/@@download/ENCFF002ETD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXL/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF002ETF fastq reads ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1386095278 Bing Ren, UCSD 92c68baec0e555913f18e446a942b5ba SRA:SRR3652158 https://www.encodeproject.org/files/ENCFF002ETF/@@download/ENCFF002ETF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXM/ released low read length, mild to moderate bottlenecking, control low read depth ENCFF071EZC bam alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETD, ENCFF806TVZ 1000499038 ENCODE Processing Pipeline b88fbfa0346432ee649f077f869d529a https://www.encodeproject.org/files/ENCFF071EZC/@@download/ENCFF071EZC.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF137QRB bam alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETF, ENCFF806TVZ 1116574555 ENCODE Processing Pipeline 6f51d21baa9f21693dc4063eba0bf08a https://www.encodeproject.org/files/ENCFF137QRB/@@download/ENCFF137QRB.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF108IBS bed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF071EZC, ENCFF137QRB, ENCFF395ALO, ENCFF956BKJ 808219 ENCODE Processing Pipeline af26dc6ad26f45a328a41d4c6e9199ac https://www.encodeproject.org/files/ENCFF108IBS/@@download/ENCFF108IBS.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF950VYC bed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF071EZC, ENCFF395ALO, ENCFF956BKJ 884470 ENCODE Processing Pipeline 828af84be582ee1d6ef797e7620f1698 https://www.encodeproject.org/files/ENCFF950VYC/@@download/ENCFF950VYC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF336GGR bigBed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF982BYQ 2648450 ENCODE Processing Pipeline edbc055eaa099692a69da9a1c483b335 https://www.encodeproject.org/files/ENCFF336GGR/@@download/ENCFF336GGR.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF982BYQ bed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF137QRB, ENCFF395ALO, ENCFF956BKJ 834893 ENCODE Processing Pipeline f675d643dd309a85d40cf3b8c885d936 https://www.encodeproject.org/files/ENCFF982BYQ/@@download/ENCFF982BYQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF897WON bigBed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF950VYC 2797241 ENCODE Processing Pipeline 0835626c283db994769d660e09fb5e23 https://www.encodeproject.org/files/ENCFF897WON/@@download/ENCFF897WON.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF581NTZ bigBed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF108IBS 2547614 ENCODE Processing Pipeline 3fdfa62cd181a27a57f81eb4db962635 https://www.encodeproject.org/files/ENCFF581NTZ/@@download/ENCFF581NTZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF223JOK bigWig signal p-value ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF071EZC, ENCFF395ALO, ENCFF956BKJ 377348904 ENCODE Processing Pipeline d52234a7ec1ec475f0d8b5777fc2b8e8 https://www.encodeproject.org/files/ENCFF223JOK/@@download/ENCFF223JOK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF719SBO bigWig signal p-value ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF137QRB, ENCFF395ALO, ENCFF956BKJ 467374816 ENCODE Processing Pipeline fd01fb2d6a6df1f0fb03cfc24f1a4f4a https://www.encodeproject.org/files/ENCFF719SBO/@@download/ENCFF719SBO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF646ISS bigWig fold change over control ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF071EZC, ENCFF395ALO, ENCFF956BKJ 422805261 ENCODE Processing Pipeline b0694fc20b083d0a192f094d380b1c67 https://www.encodeproject.org/files/ENCFF646ISS/@@download/ENCFF646ISS.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF368FKO bigWig fold change over control ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF137QRB, ENCFF395ALO, ENCFF956BKJ 440208356 ENCODE Processing Pipeline b1081629859c1772b90d3a8f38eeca67 https://www.encodeproject.org/files/ENCFF368FKO/@@download/ENCFF368FKO.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF814TOL bigWig signal p-value ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF071EZC, ENCFF137QRB, ENCFF395ALO, ENCFF956BKJ 483030672 ENCODE Processing Pipeline ce329908f8cbed45e66fb641e5cfb21f https://www.encodeproject.org/files/ENCFF814TOL/@@download/ENCFF814TOL.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF151MDZ bigWig fold change over control ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF071EZC, ENCFF137QRB, ENCFF395ALO, ENCFF956BKJ 684988930 ENCODE Processing Pipeline a1855ac6f9862f61fbf3209a0a7690c0 https://www.encodeproject.org/files/ENCFF151MDZ/@@download/ENCFF151MDZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF453DDQ bed narrowPeak replicated peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF108IBS, ENCFF950VYC, ENCFF982BYQ 1089358 ENCODE Processing Pipeline ceb85ec2536f529f1b54a090ed142169 https://www.encodeproject.org/files/ENCFF453DDQ/@@download/ENCFF453DDQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF291YJB bigBed narrowPeak replicated peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF453DDQ 2446916 ENCODE Processing Pipeline ab0008dedc542efc7c6359f4e3e5af3f https://www.encodeproject.org/files/ENCFF291YJB/@@download/ENCFF291YJB.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth ENCFF279JDQ bam unfiltered alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETF, ENCFF018NEO 1701280910 ENCODE Processing Pipeline c5a6ede2f317d486f4729ebdc178aaf7 https://www.encodeproject.org/files/ENCFF279JDQ/@@download/ENCFF279JDQ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF633XAV bam unfiltered alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETD, ENCFF018NEO 1483411531 ENCODE Processing Pipeline 5e72f7b78a84412dcb7babc78d22b7a0 https://www.encodeproject.org/files/ENCFF633XAV/@@download/ENCFF633XAV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF168EEZ bam alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETF, ENCFF018NEO 1116436779 ENCODE Processing Pipeline bf26c49570646cb0bb3856b85db9f047 https://www.encodeproject.org/files/ENCFF168EEZ/@@download/ENCFF168EEZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF518JXV bam alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETD, ENCFF018NEO 1000340240 ENCODE Processing Pipeline 269783c2873c4a58f20b50424abda9b4 https://www.encodeproject.org/files/ENCFF518JXV/@@download/ENCFF518JXV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF328LBO bed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF518JXV 884405 ENCODE Processing Pipeline aed5a025acf6830a211a8c988d7156d6 https://www.encodeproject.org/files/ENCFF328LBO/@@download/ENCFF328LBO.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF486SIN bigBed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF328LBO 2799119 ENCODE Processing Pipeline 5b7716e8d461f18fcff726ac096014dd https://www.encodeproject.org/files/ENCFF486SIN/@@download/ENCFF486SIN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF728KYK bigBed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF374QHU 2532910 ENCODE Processing Pipeline 7dba37dcd14dcfe549a4a655eddd11ff https://www.encodeproject.org/files/ENCFF728KYK/@@download/ENCFF728KYK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF980APR bed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF168EEZ, ENCFF488PXJ 743667 ENCODE Processing Pipeline 37aa6a185569a6d55628cf968e7663a3 https://www.encodeproject.org/files/ENCFF980APR/@@download/ENCFF980APR.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF799HTA bigBed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF980APR 2398768 ENCODE Processing Pipeline abe46815826c3781bfd4e034759854f3 https://www.encodeproject.org/files/ENCFF799HTA/@@download/ENCFF799HTA.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF374QHU bed narrowPeak peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF168EEZ, ENCFF488PXJ, ENCFF518JXV 802514 ENCODE Processing Pipeline 0489f630783e9f9bb2655795da20583d https://www.encodeproject.org/files/ENCFF374QHU/@@download/ENCFF374QHU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF230KZR bigWig signal p-value ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF518JXV 442463433 ENCODE Processing Pipeline 3e5553ace9c168514f253284f13a3ba3 https://www.encodeproject.org/files/ENCFF230KZR/@@download/ENCFF230KZR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF260CQL bigWig signal p-value ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF168EEZ, ENCFF488PXJ 274017290 ENCODE Processing Pipeline 72bd6819ea9e99b37912e9cd36c05f2e https://www.encodeproject.org/files/ENCFF260CQL/@@download/ENCFF260CQL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF500PYL bigWig signal p-value ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF168EEZ, ENCFF488PXJ, ENCFF518JXV 487319300 ENCODE Processing Pipeline 16e6bd4d93d6f7cc12b586f72ccb73f3 https://www.encodeproject.org/files/ENCFF500PYL/@@download/ENCFF500PYL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF118WXC bigWig fold change over control ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF052SGY, ENCFF488PXJ, ENCFF518JXV 421531289 ENCODE Processing Pipeline 600c24e96ab7771234442c1a4bbe35a2 https://www.encodeproject.org/files/ENCFF118WXC/@@download/ENCFF118WXC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF468PRL bigWig fold change over control ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF168EEZ, ENCFF488PXJ 362391671 ENCODE Processing Pipeline 056259700f401edcd22347a41889d52b https://www.encodeproject.org/files/ENCFF468PRL/@@download/ENCFF468PRL.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF181ZVG bigWig fold change over control ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF052SGY, ENCFF168EEZ, ENCFF488PXJ, ENCFF518JXV 691673023 ENCODE Processing Pipeline bc4996b5d13c8fafdb6707a8dfd36d15 https://www.encodeproject.org/files/ENCFF181ZVG/@@download/ENCFF181ZVG.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF680ZQE bigBed narrowPeak replicated peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF208FJV 2401633 ENCODE Processing Pipeline 5b314bceed59fc7cf0f8ec4e6856be3a https://www.encodeproject.org/files/ENCFF680ZQE/@@download/ENCFF680ZQE.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF208FJV bed narrowPeak replicated peaks ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF328LBO, ENCFF374QHU, ENCFF980APR 1067141 ENCODE Processing Pipeline c2c1e36722ae5b84ba17644dff093f51 https://www.encodeproject.org/files/ENCFF208FJV/@@download/ENCFF208FJV.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF002AKW fastq reads ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1361447238 Bing Ren, UCSD 42843528515f104c2591fef5d9e9cbbc SRA:SRR3652686 https://www.encodeproject.org/files/ENCFF002AKW/@@download/ENCFF002AKW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQE/ released low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AKX fastq reads ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1091774380 Bing Ren, UCSD d0e2cf67eabb1112ed5e2974e8df5925 SRA:SRR3652687 https://www.encodeproject.org/files/ENCFF002AKX/@@download/ENCFF002AKX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQC/ released low read length, mild to moderate bottlenecking, low read depth ENCFF788SXX bam alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKW, ENCFF806TVZ 902623836 ENCODE Processing Pipeline 6a2c2a715bd798fb728d4eccf8828bc1 https://www.encodeproject.org/files/ENCFF788SXX/@@download/ENCFF788SXX.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF173KEC bam alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKX, ENCFF806TVZ 697331702 ENCODE Processing Pipeline aa904b957db5edf53033ac8440807f44 https://www.encodeproject.org/files/ENCFF173KEC/@@download/ENCFF173KEC.bam mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF144INB bed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF788SXX, ENCFF999TAG 755891 ENCODE Processing Pipeline 103682eade6e9392ea5b9da55783421e https://www.encodeproject.org/files/ENCFF144INB/@@download/ENCFF144INB.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF369KLZ bed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF173KEC, ENCFF387UYW, ENCFF999TAG 878592 ENCODE Processing Pipeline 8e1bb090df40576647c48d54bf547ac4 https://www.encodeproject.org/files/ENCFF369KLZ/@@download/ENCFF369KLZ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF225ICD bigBed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF528VPM 2511903 ENCODE Processing Pipeline 4ffa6a7886b34c90a6346f77035ab18e https://www.encodeproject.org/files/ENCFF225ICD/@@download/ENCFF225ICD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF722XYF bigBed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF144INB 2429741 ENCODE Processing Pipeline 8b11202f4f287ce10426db0211335314 https://www.encodeproject.org/files/ENCFF722XYF/@@download/ENCFF722XYF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF341RES bigBed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF369KLZ 2733716 ENCODE Processing Pipeline 45c0995a9347f1ee6833959616f04c89 https://www.encodeproject.org/files/ENCFF341RES/@@download/ENCFF341RES.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF528VPM bed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF173KEC, ENCFF387UYW, ENCFF788SXX, ENCFF999TAG 789739 ENCODE Processing Pipeline 204a69cfcc33b3bded2180f252f1f6aa https://www.encodeproject.org/files/ENCFF528VPM/@@download/ENCFF528VPM.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF806MPK bigWig signal p-value ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF788SXX, ENCFF999TAG 474087266 ENCODE Processing Pipeline 9b84ef645c616749c1bfb49ff6966bc0 https://www.encodeproject.org/files/ENCFF806MPK/@@download/ENCFF806MPK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF577HVF bigWig signal p-value ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF173KEC, ENCFF387UYW, ENCFF999TAG 381283280 ENCODE Processing Pipeline dd1f11edcfcd2960de7abb0ccd5480b0 https://www.encodeproject.org/files/ENCFF577HVF/@@download/ENCFF577HVF.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF641MNG bigWig signal p-value ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF173KEC, ENCFF387UYW, ENCFF788SXX, ENCFF999TAG 606601374 ENCODE Processing Pipeline 8e78bde50ae0c002c034064d7646e427 https://www.encodeproject.org/files/ENCFF641MNG/@@download/ENCFF641MNG.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF823IJU bigWig fold change over control ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF788SXX, ENCFF999TAG 432625086 ENCODE Processing Pipeline f9199392a0d76e99defee4acaa25b476 https://www.encodeproject.org/files/ENCFF823IJU/@@download/ENCFF823IJU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF652LXV bed narrowPeak replicated peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF144INB, ENCFF369KLZ, ENCFF528VPM 860356 ENCODE Processing Pipeline 47051b07b30b8d4a0e8f53ab673033ee https://www.encodeproject.org/files/ENCFF652LXV/@@download/ENCFF652LXV.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF472GHJ bigWig fold change over control ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF173KEC, ENCFF387UYW, ENCFF999TAG 308047536 ENCODE Processing Pipeline 9b8368c2b7ecdefeabb923853949cb1f https://www.encodeproject.org/files/ENCFF472GHJ/@@download/ENCFF472GHJ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF997PEC bigBed narrowPeak replicated peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF652LXV 2045753 ENCODE Processing Pipeline b61a5a18a25eac8dc5c08bac24644d18 https://www.encodeproject.org/files/ENCFF997PEC/@@download/ENCFF997PEC.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF048BZV bigWig fold change over control ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF173KEC, ENCFF387UYW, ENCFF788SXX, ENCFF999TAG 602415216 ENCODE Processing Pipeline 8fbd2bb8d6aea0a6ced45df3cb417d33 https://www.encodeproject.org/files/ENCFF048BZV/@@download/ENCFF048BZV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, low read depth ENCFF756LYJ bam unfiltered alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKX, ENCFF018NEO 1101648760 ENCODE Processing Pipeline b7c72fb5af8de7e3944f2e8ace164e7d https://www.encodeproject.org/files/ENCFF756LYJ/@@download/ENCFF756LYJ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF057ZGS bam unfiltered alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKW, ENCFF018NEO 1422378737 ENCODE Processing Pipeline 9ef4b8d1b0d7d9ea6816a44924c849b7 https://www.encodeproject.org/files/ENCFF057ZGS/@@download/ENCFF057ZGS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF986VDL bam alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKX, ENCFF018NEO 697245015 ENCODE Processing Pipeline 43e5138f00adfa63bbd841fc9680ec61 https://www.encodeproject.org/files/ENCFF986VDL/@@download/ENCFF986VDL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF023THF bam alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKW, ENCFF018NEO 902373885 ENCODE Processing Pipeline 9b0a357678ef16d2bf4b72c03ab4e285 https://www.encodeproject.org/files/ENCFF023THF/@@download/ENCFF023THF.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF893AJQ bed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF023THF, ENCFF032AWP, ENCFF446WFN 740630 ENCODE Processing Pipeline f8528e53e04cb4bc89678b645a2d84c8 https://www.encodeproject.org/files/ENCFF893AJQ/@@download/ENCFF893AJQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF497IIE bed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF986VDL 872566 ENCODE Processing Pipeline 64d43aca78c6d1ffb06aa29e1be7846d https://www.encodeproject.org/files/ENCFF497IIE/@@download/ENCFF497IIE.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF256RFY bed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF023THF, ENCFF032AWP, ENCFF446WFN, ENCFF986VDL 763306 ENCODE Processing Pipeline 4e060aaecbb38a228cd8aeb3d5ecab63 https://www.encodeproject.org/files/ENCFF256RFY/@@download/ENCFF256RFY.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF015UXO bigBed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF893AJQ 2383049 ENCODE Processing Pipeline 7c79997ad20b362de9a9c185bdc3e1da https://www.encodeproject.org/files/ENCFF015UXO/@@download/ENCFF015UXO.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF264BGT bigBed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF497IIE 2711874 ENCODE Processing Pipeline c9525cfd5f4c5e19b5010ad70ad72af0 https://www.encodeproject.org/files/ENCFF264BGT/@@download/ENCFF264BGT.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF693EKB bigBed narrowPeak peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF256RFY 2437534 ENCODE Processing Pipeline 861880f59a1a43cb7f4fc3b3191f6885 https://www.encodeproject.org/files/ENCFF693EKB/@@download/ENCFF693EKB.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF577TTF bigWig fold change over control ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF986VDL 305784422 ENCODE Processing Pipeline 32e729da37b9144ca0686243be1e3828 https://www.encodeproject.org/files/ENCFF577TTF/@@download/ENCFF577TTF.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF101SCV bed narrowPeak replicated peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF256RFY, ENCFF497IIE, ENCFF893AJQ 855684 ENCODE Processing Pipeline 4127144415e66bf4c6e04a7d66596e4f https://www.encodeproject.org/files/ENCFF101SCV/@@download/ENCFF101SCV.bed.gz mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF069IEP bigWig signal p-value ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF023THF, ENCFF032AWP, ENCFF446WFN 387442594 ENCODE Processing Pipeline 3f74052ac274aff43b90ddea252b95be https://www.encodeproject.org/files/ENCFF069IEP/@@download/ENCFF069IEP.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF726YSL bigWig signal p-value ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF446WFN, ENCFF986VDL 328265722 ENCODE Processing Pipeline 8a1fe8f423c2692cb8f85e8a0ddff9e1 https://www.encodeproject.org/files/ENCFF726YSL/@@download/ENCFF726YSL.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF774ZAY bigWig fold change over control ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF023THF, ENCFF032AWP, ENCFF446WFN, ENCFF986VDL 609117692 ENCODE Processing Pipeline 80c222247714513dd1c9d5a034fa0b8b https://www.encodeproject.org/files/ENCFF774ZAY/@@download/ENCFF774ZAY.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF619JAF bigBed narrowPeak replicated peaks ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF101SCV 2030415 ENCODE Processing Pipeline 993770f1e13fa6349452b2e67540a720 https://www.encodeproject.org/files/ENCFF619JAF/@@download/ENCFF619JAF.bigBed mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF678GIH bigWig signal p-value ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF023THF, ENCFF032AWP, ENCFF446WFN, ENCFF986VDL 609106982 ENCODE Processing Pipeline db1debd3c2c13da2c2fa2adf99078028 https://www.encodeproject.org/files/ENCFF678GIH/@@download/ENCFF678GIH.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF792YUQ bigWig fold change over control ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF023THF, ENCFF032AWP, ENCFF446WFN 427634510 ENCODE Processing Pipeline 69030a6a07a14d9aaff3dc1a36e9ef55 https://www.encodeproject.org/files/ENCFF792YUQ/@@download/ENCFF792YUQ.bigWig mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF001LYE bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LYQ 4440707312 Ross Hardison, PennState d69c59a8d278da8d1de2a47fa2fe38ec https://www.encodeproject.org/files/ENCFF001LYE/@@download/ENCFF001LYE.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF001LYF bigBed broadPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YCL 1011210 Ross Hardison, PennState e6fb9f033d0fbcfc5fc6be8cddf7651b https://www.encodeproject.org/files/ENCFF001LYF/@@download/ENCFF001LYF.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF001LYG bigBed broadPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCM 914996 Ross Hardison, PennState 313ab04cc5de7f1f8536ec5af4662cec https://www.encodeproject.org/files/ENCFF001LYG/@@download/ENCFF001LYG.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF001LYH bigBed broadPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCN 1053686 Ross Hardison, PennState bf9d0fa31b6db14b7aa2d296cf185941 https://www.encodeproject.org/files/ENCFF001LYH/@@download/ENCFF001LYH.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF001LYI bigWig signal ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 4799644996 Ross Hardison, PennState defebeba98ef2c036d1741f2ef7baee2 https://www.encodeproject.org/files/ENCFF001LYI/@@download/ENCFF001LYI.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from control insufficient read depth ENCFF001LYJ bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LYV 5119690814 Ross Hardison, PennState 1e6b2284ecd270543b5422c35c7b8bde https://www.encodeproject.org/files/ENCFF001LYJ/@@download/ENCFF001LYJ.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF001LYK bigWig signal ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 4814930342 Ross Hardison, PennState 5600fd7985f83393c8c7449445504d32 https://www.encodeproject.org/files/ENCFF001LYK/@@download/ENCFF001LYK.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from control insufficient read depth ENCFF001LYM bigWig signal ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 5736064868 Ross Hardison, PennState fd80615dd6046194540b56cddd1d8261 https://www.encodeproject.org/files/ENCFF001LYM/@@download/ENCFF001LYM.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from control insufficient read depth ENCFF001LYQ fastq reads ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4218665426 Ross Hardison, PennState 7e540495788697993397c6d30b4663f8 https://www.encodeproject.org/files/ENCFF001LYQ/@@download/ENCFF001LYQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMU/ released mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length control insufficient read depth ENCFF001LYV fastq reads ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4911647455 Ross Hardison, PennState d3f6b864da6cb423141e87f75ea28cc7 https://www.encodeproject.org/files/ENCFF001LYV/@@download/ENCFF001LYV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length control insufficient read depth ENCFF001YCL bed broadPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 554579 Ross Hardison, PennState 0c8495320ef6c4d58cb35cb934e308bb https://www.encodeproject.org/files/ENCFF001YCL/@@download/ENCFF001YCL.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from control insufficient read depth ENCFF001YCM bed broadPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 480282 Ross Hardison, PennState aa6dced1893ecfdb0167212dc652b93a https://www.encodeproject.org/files/ENCFF001YCM/@@download/ENCFF001YCM.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from control insufficient read depth ENCFF001YCN bed broadPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 557624 Ross Hardison, PennState f798745d8c2205315a942155ef2cecd2 https://www.encodeproject.org/files/ENCFF001YCN/@@download/ENCFF001YCN.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from control insufficient read depth ENCFF415TQC bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LYV, ENCFF806TVZ 3932309139 ENCODE Processing Pipeline 4512be3cc413a87c999b29bf63182a2a https://www.encodeproject.org/files/ENCFF415TQC/@@download/ENCFF415TQC.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF316UZK bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LYQ, ENCFF806TVZ 3353304813 ENCODE Processing Pipeline 6545e52330b769888f7d6bf6c921c562 https://www.encodeproject.org/files/ENCFF316UZK/@@download/ENCFF316UZK.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF700GEQ bam unfiltered alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYV, ENCFF018NEO 4440734654 ENCODE Processing Pipeline a4d99f7ee78483af1924f3f17b8e174b https://www.encodeproject.org/files/ENCFF700GEQ/@@download/ENCFF700GEQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF829TQD bam unfiltered alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYQ, ENCFF018NEO 3864735580 ENCODE Processing Pipeline b7fbfd71843c8a702b3d54760ac3f8d1 https://www.encodeproject.org/files/ENCFF829TQD/@@download/ENCFF829TQD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF658GSP bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYQ, ENCFF018NEO 2794808195 ENCODE Processing Pipeline 4f267c95a765a64f36ff6ba7f4b04ce2 https://www.encodeproject.org/files/ENCFF658GSP/@@download/ENCFF658GSP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF869JLI bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYV, ENCFF018NEO 3236781368 ENCODE Processing Pipeline a0d88f18e43790ee29ac7a86e2a49dac https://www.encodeproject.org/files/ENCFF869JLI/@@download/ENCFF869JLI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF948JNB bed narrowPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF381DCK, ENCFF658GSP, ENCFF869JLI, ENCFF887UBK 2676945 ENCODE Processing Pipeline 951f5e86b5dc56aa0951ae5cd32dc641 https://www.encodeproject.org/files/ENCFF948JNB/@@download/ENCFF948JNB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF364XFV bed narrowPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF658GSP, ENCFF887UBK 3234502 ENCODE Processing Pipeline 920bb21bea948bee5a6ea22e0cd36abf https://www.encodeproject.org/files/ENCFF364XFV/@@download/ENCFF364XFV.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF171QRP bed narrowPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF381DCK, ENCFF869JLI 2384809 ENCODE Processing Pipeline 81c6b3113e2a3425b3b2ff8cef57256a https://www.encodeproject.org/files/ENCFF171QRP/@@download/ENCFF171QRP.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF121RTS bigBed narrowPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF364XFV 6802131 ENCODE Processing Pipeline cf34d823afa3fdecaed8ce2245b1cfa9 https://www.encodeproject.org/files/ENCFF121RTS/@@download/ENCFF121RTS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF731WLU bigBed narrowPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF171QRP 5084102 ENCODE Processing Pipeline 89f95161ff49a86b048be6af27c99036 https://www.encodeproject.org/files/ENCFF731WLU/@@download/ENCFF731WLU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF476PLP bigBed narrowPeak peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF948JNB 5635240 ENCODE Processing Pipeline 903a6b31d29b1568a238a108674c715e https://www.encodeproject.org/files/ENCFF476PLP/@@download/ENCFF476PLP.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF166NZF bigWig signal p-value ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF658GSP, ENCFF887UBK 786359627 ENCODE Processing Pipeline f02f1f3c11a72549a61984d2888e130f https://www.encodeproject.org/files/ENCFF166NZF/@@download/ENCFF166NZF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF551YUS bigWig signal p-value ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF381DCK, ENCFF869JLI 376758930 ENCODE Processing Pipeline fb17b9957d49e8c0e7554bd82ecc25c9 https://www.encodeproject.org/files/ENCFF551YUS/@@download/ENCFF551YUS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF245IGH bigWig signal p-value ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF381DCK, ENCFF658GSP, ENCFF869JLI, ENCFF887UBK 742056594 ENCODE Processing Pipeline 8fce63903e3aa9c060bf8c2ca0d4bac2 https://www.encodeproject.org/files/ENCFF245IGH/@@download/ENCFF245IGH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF610VRF bigWig fold change over control ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF381DCK, ENCFF658GSP, ENCFF887UBK 831443144 ENCODE Processing Pipeline 4e4f295a25ee05da5f20ba875ae36fe3 https://www.encodeproject.org/files/ENCFF610VRF/@@download/ENCFF610VRF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF076CTS bigWig fold change over control ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF381DCK, ENCFF869JLI 804480419 ENCODE Processing Pipeline 1dd9e96cfeeb877367c169f82e303ef4 https://www.encodeproject.org/files/ENCFF076CTS/@@download/ENCFF076CTS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF034FFR bigWig fold change over control ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF381DCK, ENCFF658GSP, ENCFF869JLI, ENCFF887UBK 1389904776 ENCODE Processing Pipeline c447dd0cd85b1fc9924a5d21771b1480 https://www.encodeproject.org/files/ENCFF034FFR/@@download/ENCFF034FFR.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF152JSK bigBed narrowPeak replicated peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF951PIE 5026695 ENCODE Processing Pipeline e83be5580719b55c14aed9632ef780ed https://www.encodeproject.org/files/ENCFF152JSK/@@download/ENCFF152JSK.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF951PIE bed narrowPeak replicated peaks ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF171QRP, ENCFF364XFV, ENCFF948JNB 3254759 ENCODE Processing Pipeline ed7b4650b7fe1622eda46b7e988bd73f https://www.encodeproject.org/files/ENCFF951PIE/@@download/ENCFF951PIE.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF001MQS bigWig signal ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 2999778436 Ross Hardison, PennState 5e9d0500e6bf937cb055c0b0d596b41d https://www.encodeproject.org/files/ENCFF001MQS/@@download/ENCFF001MQS.bigWig mm9 released low read length missing derived_from, insufficient read depth for broad peaks control ENCFF001MQT bam alignments ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQZ 1889071744 Ross Hardison, PennState 23cfacd1c4fd96eeca426a5620ab0e18 https://www.encodeproject.org/files/ENCFF001MQT/@@download/ENCFF001MQT.bam mm9 released low read length insufficient read depth for broad peaks control ENCFF001MQZ fastq reads ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 48 single-ended 1546653507 Ross Hardison, PennState f224a6154f66084f43871d99c45f3d79 https://www.encodeproject.org/files/ENCFF001MQZ/@@download/ENCFF001MQZ.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF779JLR bam unfiltered alignments ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQZ, ENCFF806TVZ 1990431978 J. Michael Cherry, Stanford 6a177ac7a49da9c090b08283284d2483 https://www.encodeproject.org/files/ENCFF779JLR/@@download/ENCFF779JLR.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF166WMB bam alignments ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQZ, ENCFF806TVZ 1479278136 J. Michael Cherry, Stanford dba590b159ae34760e79696ba0debf66 https://www.encodeproject.org/files/ENCFF166WMB/@@download/ENCFF166WMB.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF350XLQ bam unfiltered alignments ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQZ, ENCFF018NEO 1826546862 ENCODE Processing Pipeline cde8c417c2dc50c374acce36ba944522 https://www.encodeproject.org/files/ENCFF350XLQ/@@download/ENCFF350XLQ.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF441NWZ bam alignments ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQZ, ENCFF018NEO 1343494896 ENCODE Processing Pipeline 5a9f3a3a1b250b664cd6e244d5aa43d6 https://www.encodeproject.org/files/ENCFF441NWZ/@@download/ENCFF441NWZ.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF657VUN fastq reads ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1942521327 Bing Ren, UCSD 76e3fd88cf7f052f4ed1bd28c00b77c4 SRA:SRR3653408 https://www.encodeproject.org/files/ENCFF657VUN/@@download/ENCFF657VUN.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released inconsistent platforms ENCFF701LKI fastq reads ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2544539441 Bing Ren, UCSD 69747725a86dee3ff611cd109844f735 SRA:SRR3653409 https://www.encodeproject.org/files/ENCFF701LKI/@@download/ENCFF701LKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released inconsistent platforms ENCFF570YXT bam alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF657VUN, ENCFF806TVZ 1500669735 ENCODE Processing Pipeline 1a522ccbe6b8a4f62bfa3a5671311581 https://www.encodeproject.org/files/ENCFF570YXT/@@download/ENCFF570YXT.bam mm10-minimal archived inconsistent platforms ENCFF935IHT bam alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF701LKI, ENCFF806TVZ 1945462605 ENCODE Processing Pipeline 38aecf00ee93fd5cd2ef8e567706532d https://www.encodeproject.org/files/ENCFF935IHT/@@download/ENCFF935IHT.bam mm10-minimal archived inconsistent platforms ENCFF314UND bed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF570YXT 543425 ENCODE Processing Pipeline 97f037bce5994a594faff25e56777030 https://www.encodeproject.org/files/ENCFF314UND/@@download/ENCFF314UND.bed.gz mm10-minimal archived inconsistent platforms ENCFF447EVB bigBed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF314UND 1794016 ENCODE Processing Pipeline 6a5147c86a698012f231c94569a5dc9a https://www.encodeproject.org/files/ENCFF447EVB/@@download/ENCFF447EVB.bigBed mm10-minimal archived inconsistent platforms ENCFF495WRG bigBed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF091ORI 1914217 ENCODE Processing Pipeline a034dc17228926055299b3196cae1540 https://www.encodeproject.org/files/ENCFF495WRG/@@download/ENCFF495WRG.bigBed mm10-minimal archived inconsistent platforms ENCFF355WYE bed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF935IHT 564466 ENCODE Processing Pipeline 459f0da3a40331f355df93fe37d3da78 https://www.encodeproject.org/files/ENCFF355WYE/@@download/ENCFF355WYE.bed.gz mm10-minimal archived inconsistent platforms ENCFF091ORI bed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF478WUL, ENCFF570YXT, ENCFF935IHT 599811 ENCODE Processing Pipeline 43aaca8022a11deecf788feb2a53b2de https://www.encodeproject.org/files/ENCFF091ORI/@@download/ENCFF091ORI.bed.gz mm10-minimal archived inconsistent platforms ENCFF419HZE bigBed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF355WYE 1848156 ENCODE Processing Pipeline 4da731fe7df761197b53f99ed3c938f1 https://www.encodeproject.org/files/ENCFF419HZE/@@download/ENCFF419HZE.bigBed mm10-minimal archived inconsistent platforms ENCFF724JKA bigWig signal p-value ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF935IHT 758383439 ENCODE Processing Pipeline 2ab4a3ebbb9c005f90ebd7439163fae7 https://www.encodeproject.org/files/ENCFF724JKA/@@download/ENCFF724JKA.bigWig mm10-minimal archived inconsistent platforms ENCFF056LXC bigWig signal p-value ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF570YXT 668266960 ENCODE Processing Pipeline 8db5796826c4e97facd6b7b0930323f5 https://www.encodeproject.org/files/ENCFF056LXC/@@download/ENCFF056LXC.bigWig mm10-minimal archived inconsistent platforms ENCFF133IWF bigWig signal p-value ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF478WUL, ENCFF570YXT, ENCFF935IHT 993278664 ENCODE Processing Pipeline 85c11470952fdec4ef77143ce8413d9a https://www.encodeproject.org/files/ENCFF133IWF/@@download/ENCFF133IWF.bigWig mm10-minimal archived inconsistent platforms ENCFF096PUN bigWig fold change over control ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF935IHT 741547373 ENCODE Processing Pipeline c5725a8a7a879d6fc86fa2599e61110b https://www.encodeproject.org/files/ENCFF096PUN/@@download/ENCFF096PUN.bigWig mm10-minimal archived inconsistent platforms ENCFF119LXK bigWig fold change over control ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF570YXT 636633946 ENCODE Processing Pipeline 4ce53950822876f3071c33c08aae090d https://www.encodeproject.org/files/ENCFF119LXK/@@download/ENCFF119LXK.bigWig mm10-minimal archived inconsistent platforms ENCFF648RUX bed narrowPeak replicated peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF091ORI, ENCFF314UND, ENCFF355WYE 671810 ENCODE Processing Pipeline 4db105ef99d62459777bfa05e845f409 https://www.encodeproject.org/files/ENCFF648RUX/@@download/ENCFF648RUX.bed.gz mm10-minimal archived inconsistent platforms ENCFF649MDK bigWig fold change over control ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF478WUL, ENCFF570YXT, ENCFF935IHT 1007720958 ENCODE Processing Pipeline 01865e9babf47c9ae475364a4791398d https://www.encodeproject.org/files/ENCFF649MDK/@@download/ENCFF649MDK.bigWig mm10-minimal archived inconsistent platforms ENCFF852SNZ bigBed narrowPeak replicated peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF648RUX 1635987 ENCODE Processing Pipeline bc9f76a47419e4a84f6d31ece61bc5fe https://www.encodeproject.org/files/ENCFF852SNZ/@@download/ENCFF852SNZ.bigBed mm10-minimal archived inconsistent platforms ENCFF401BKM bam unfiltered alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF657VUN 2179451037 ENCODE Processing Pipeline cf3d6f4d8d54f4dbd192962143e52b34 https://www.encodeproject.org/files/ENCFF401BKM/@@download/ENCFF401BKM.bam mm10 released inconsistent platforms ENCFF258KCR bam unfiltered alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF701LKI 2868284272 ENCODE Processing Pipeline 5ba9217d4ef305cddcd9da180eb35059 https://www.encodeproject.org/files/ENCFF258KCR/@@download/ENCFF258KCR.bam mm10 released inconsistent platforms ENCFF367IUT bam alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF657VUN 1500435647 ENCODE Processing Pipeline c8fcdacb57ec1200cf4ae9ef5542a1b0 https://www.encodeproject.org/files/ENCFF367IUT/@@download/ENCFF367IUT.bam mm10 released inconsistent platforms ENCFF725NPP bam alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF701LKI 1945078620 ENCODE Processing Pipeline d9ba8c9da1c91d21c3e0bc81c800e075 https://www.encodeproject.org/files/ENCFF725NPP/@@download/ENCFF725NPP.bam mm10 released inconsistent platforms ENCFF113JCX bigBed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF224ISM 1842051 ENCODE Processing Pipeline b1d88d6c11ab13cf60388e1ebef37615 https://www.encodeproject.org/files/ENCFF113JCX/@@download/ENCFF113JCX.bigBed mm10 released inconsistent platforms ENCFF054TEM bigBed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF443OHY 1799498 ENCODE Processing Pipeline cce8b00853f790f69828d221d8656a99 https://www.encodeproject.org/files/ENCFF054TEM/@@download/ENCFF054TEM.bigBed mm10 released inconsistent platforms ENCFF601WUT bed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF367IUT, ENCFF556BOJ, ENCFF708TTS, ENCFF725NPP 613227 ENCODE Processing Pipeline d015b00abf172c2976ea7c4a9df22186 https://www.encodeproject.org/files/ENCFF601WUT/@@download/ENCFF601WUT.bed.gz mm10 released inconsistent platforms ENCFF443OHY bed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF367IUT, ENCFF708TTS 542611 ENCODE Processing Pipeline 3988fe8a2ccd05ed70d7e64103103cfd https://www.encodeproject.org/files/ENCFF443OHY/@@download/ENCFF443OHY.bed.gz mm10 released inconsistent platforms ENCFF224ISM bed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF725NPP 563831 ENCODE Processing Pipeline ab4eb79c974911d515ebf4be2a704ac2 https://www.encodeproject.org/files/ENCFF224ISM/@@download/ENCFF224ISM.bed.gz mm10 released inconsistent platforms ENCFF887HGM bigBed narrowPeak peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF601WUT 1944850 ENCODE Processing Pipeline 5d5828922f51134f3ed94b10f9e92ec7 https://www.encodeproject.org/files/ENCFF887HGM/@@download/ENCFF887HGM.bigBed mm10 released inconsistent platforms ENCFF168CXK bigWig signal p-value ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF725NPP 526371004 ENCODE Processing Pipeline 25ddad99d3ffb5e24bd8e39c8fd4aaaa https://www.encodeproject.org/files/ENCFF168CXK/@@download/ENCFF168CXK.bigWig mm10 released inconsistent platforms ENCFF055EDN bigWig signal p-value ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF367IUT, ENCFF708TTS 499866997 ENCODE Processing Pipeline 9cebff8c83a1311fa8fdd8dedecee55c https://www.encodeproject.org/files/ENCFF055EDN/@@download/ENCFF055EDN.bigWig mm10 released inconsistent platforms ENCFF205IPW bigWig signal p-value ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF367IUT, ENCFF556BOJ, ENCFF708TTS, ENCFF725NPP 918688778 ENCODE Processing Pipeline 896e25adc03e18ceb5450a161502e7ad https://www.encodeproject.org/files/ENCFF205IPW/@@download/ENCFF205IPW.bigWig mm10 released inconsistent platforms ENCFF594JMA bigWig fold change over control ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF725NPP 662603522 ENCODE Processing Pipeline 00fc7a5f96a7add84ce407eb9cc34f36 https://www.encodeproject.org/files/ENCFF594JMA/@@download/ENCFF594JMA.bigWig mm10 released inconsistent platforms ENCFF947YJM bigWig fold change over control ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF367IUT, ENCFF708TTS 554544802 ENCODE Processing Pipeline 3f1a9ffb7ad5d8376739b4efbe18c036 https://www.encodeproject.org/files/ENCFF947YJM/@@download/ENCFF947YJM.bigWig mm10 released inconsistent platforms ENCFF727YWB bigWig fold change over control ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF367IUT, ENCFF556BOJ, ENCFF708TTS, ENCFF725NPP 1104716113 ENCODE Processing Pipeline 06dcfff3c4c0d558b06ec8e44a22b60a https://www.encodeproject.org/files/ENCFF727YWB/@@download/ENCFF727YWB.bigWig mm10 released inconsistent platforms ENCFF490SEH bed narrowPeak replicated peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF224ISM, ENCFF443OHY, ENCFF601WUT 683869 ENCODE Processing Pipeline 16bfbe461d3f714b933e0db095c0bce5 https://www.encodeproject.org/files/ENCFF490SEH/@@download/ENCFF490SEH.bed.gz mm10 released inconsistent platforms ENCFF364DVM bigBed narrowPeak replicated peaks ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF490SEH 1657097 ENCODE Processing Pipeline 40995734dc7b25448d14f816d1fc22f4 https://www.encodeproject.org/files/ENCFF364DVM/@@download/ENCFF364DVM.bigBed mm10 released inconsistent platforms ENCFF657WBS fastq reads ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 2 50 single-ended 969444843 Bing Ren, UCSD d9b1d6205df8a5cb8cb78b225cf359c7 SRA:SRR3651458 https://www.encodeproject.org/files/ENCFF657WBS/@@download/ENCFF657WBS.fastq.gz Illumina HiSeq 2500 /files/ENCFF747OOK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF320ZCG fastq reads ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 50 single-ended 1826373334 Bing Ren, UCSD d94629b56ef38340ecf3495aca2250a9 SRA:SRR3651460 https://www.encodeproject.org/files/ENCFF320ZCG/@@download/ENCFF320ZCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF751LJT fastq reads ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 2 50 single-ended 1035077509 Bing Ren, UCSD 4e57ef58330a59f0d2513f317f4d4d5d SRA:SRR3651461 https://www.encodeproject.org/files/ENCFF751LJT/@@download/ENCFF751LJT.fastq.gz Illumina HiSeq 2500 /files/ENCFF618USE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF504IGO fastq reads ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 50 single-ended 1658142291 Bing Ren, UCSD 27ee1f914b9ec8e65395ca4057f71648 SRA:SRR3651459 https://www.encodeproject.org/files/ENCFF504IGO/@@download/ENCFF504IGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF034RGD bam alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF320ZCG, ENCFF751LJT, ENCFF806TVZ 1687536427 ENCODE Processing Pipeline 9f7c685ef3416ed950bb076d651ae9f1 https://www.encodeproject.org/files/ENCFF034RGD/@@download/ENCFF034RGD.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF472VYV bam alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF504IGO, ENCFF657WBS, ENCFF806TVZ 1506361423 ENCODE Processing Pipeline 8be5aa640f757d7c3687ee943f5b3975 https://www.encodeproject.org/files/ENCFF472VYV/@@download/ENCFF472VYV.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF088EAY bed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF034RGD, ENCFF087UEM, ENCFF472VYV, ENCFF478WUL 525972 ENCODE Processing Pipeline 58b288ed0f58e1defffae20772f2ae10 https://www.encodeproject.org/files/ENCFF088EAY/@@download/ENCFF088EAY.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF961NVK bigBed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF974LUI 659100 ENCODE Processing Pipeline 02a17a6d0ab9bf41d47a0bdb1f01ac87 https://www.encodeproject.org/files/ENCFF961NVK/@@download/ENCFF961NVK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF974LUI bed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF034RGD, ENCFF087UEM, ENCFF478WUL 306007 ENCODE Processing Pipeline 03f8bfaa55e2769c5d12571f6a006719 https://www.encodeproject.org/files/ENCFF974LUI/@@download/ENCFF974LUI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF988MYQ bigBed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF687UGG 899481 ENCODE Processing Pipeline 7ee68640a7973ab158fe37cc4a227dee https://www.encodeproject.org/files/ENCFF988MYQ/@@download/ENCFF988MYQ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF687UGG bed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF087UEM, ENCFF472VYV, ENCFF478WUL 443625 ENCODE Processing Pipeline e6057c688de2ceb62839e8b93a9b208a https://www.encodeproject.org/files/ENCFF687UGG/@@download/ENCFF687UGG.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF610QFX bigBed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF088EAY 1252793 ENCODE Processing Pipeline 1f77a67314466a62e40689ac025f1155 https://www.encodeproject.org/files/ENCFF610QFX/@@download/ENCFF610QFX.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF707CLM bigWig signal p-value ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF087UEM, ENCFF472VYV, ENCFF478WUL 683955454 ENCODE Processing Pipeline f9de2a6ec7fdb129d5ee3dd69d6c87e0 https://www.encodeproject.org/files/ENCFF707CLM/@@download/ENCFF707CLM.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF682NSJ bigWig signal p-value ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF034RGD, ENCFF087UEM, ENCFF472VYV, ENCFF478WUL 972725725 ENCODE Processing Pipeline 4086f756500ed5b2dd64c885274405ab https://www.encodeproject.org/files/ENCFF682NSJ/@@download/ENCFF682NSJ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF132MZP bigWig fold change over control ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF034RGD, ENCFF087UEM, ENCFF478WUL 805382960 ENCODE Processing Pipeline ecc2cc954866eb80cc7faedf7fbff749 https://www.encodeproject.org/files/ENCFF132MZP/@@download/ENCFF132MZP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF267JRR bed narrowPeak replicated peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF088EAY, ENCFF687UGG, ENCFF974LUI 154292 ENCODE Processing Pipeline f8c98e1a73f9c71112e8feabe22cf47d https://www.encodeproject.org/files/ENCFF267JRR/@@download/ENCFF267JRR.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF766PFO bigWig signal p-value ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF034RGD, ENCFF087UEM, ENCFF478WUL 691326448 ENCODE Processing Pipeline 7c70f552851d61080dd9fbde5df4209f https://www.encodeproject.org/files/ENCFF766PFO/@@download/ENCFF766PFO.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF610NRQ bigWig fold change over control ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF087UEM, ENCFF472VYV, ENCFF478WUL 726973282 ENCODE Processing Pipeline 4b87e57f76383efe363f31845e5e0be2 https://www.encodeproject.org/files/ENCFF610NRQ/@@download/ENCFF610NRQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF652IKD bigBed narrowPeak replicated peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF267JRR 407279 ENCODE Processing Pipeline dc5217b0ebd8c6b84996e7d0fbcc14a2 https://www.encodeproject.org/files/ENCFF652IKD/@@download/ENCFF652IKD.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF394YXI bigWig fold change over control ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF034RGD, ENCFF087UEM, ENCFF472VYV, ENCFF478WUL 1140914893 ENCODE Processing Pipeline 0f5e79f482f46a5947396e194a20808d https://www.encodeproject.org/files/ENCFF394YXI/@@download/ENCFF394YXI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF120TWU bam unfiltered alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF504IGO, ENCFF657WBS 3166289738 ENCODE Processing Pipeline 9623367a7b735986742f1ea939717fb4 https://www.encodeproject.org/files/ENCFF120TWU/@@download/ENCFF120TWU.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF414NYA bam unfiltered alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF320ZCG, ENCFF751LJT 3462183845 ENCODE Processing Pipeline 72f81a762d064a8b509d5ac72772378b https://www.encodeproject.org/files/ENCFF414NYA/@@download/ENCFF414NYA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF056IMN bam alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF320ZCG, ENCFF751LJT 1686821680 ENCODE Processing Pipeline eda54f0f92abd80b5719fd0a11aa8bdb https://www.encodeproject.org/files/ENCFF056IMN/@@download/ENCFF056IMN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF219FFX bam alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF504IGO, ENCFF657WBS 1505642079 ENCODE Processing Pipeline cc4b3ebe93d93c8adf120e812bb685fa https://www.encodeproject.org/files/ENCFF219FFX/@@download/ENCFF219FFX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF317SFX bed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF056IMN, ENCFF556BOJ 287171 ENCODE Processing Pipeline 97d605fb60be676d685feadf6ca9ccf7 https://www.encodeproject.org/files/ENCFF317SFX/@@download/ENCFF317SFX.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF619KPC bed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF219FFX, ENCFF708TTS 440910 ENCODE Processing Pipeline f8736f4872935137bef2b12165c5387f https://www.encodeproject.org/files/ENCFF619KPC/@@download/ENCFF619KPC.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF156UMX bigBed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF317SFX 621732 ENCODE Processing Pipeline f70f1fb0258602c552f8c0b81fd0ca68 https://www.encodeproject.org/files/ENCFF156UMX/@@download/ENCFF156UMX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF924NNU bed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF056IMN, ENCFF219FFX, ENCFF556BOJ, ENCFF708TTS 597557 ENCODE Processing Pipeline 2c344d336dc7b7161d3db1e78d18b807 https://www.encodeproject.org/files/ENCFF924NNU/@@download/ENCFF924NNU.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF359GXZ bigBed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF924NNU 1390364 ENCODE Processing Pipeline c21af92fc0b09b8176f46ef7c533e7ab https://www.encodeproject.org/files/ENCFF359GXZ/@@download/ENCFF359GXZ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF739FCO bigWig signal p-value ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF219FFX, ENCFF708TTS 621516401 ENCODE Processing Pipeline aee8355d0caa29aa5ed75d94a27ec1e4 https://www.encodeproject.org/files/ENCFF739FCO/@@download/ENCFF739FCO.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF711QPL bigBed narrowPeak peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF619KPC 894248 ENCODE Processing Pipeline b655967ef42dc4c9c4cfe22ad352a7ba https://www.encodeproject.org/files/ENCFF711QPL/@@download/ENCFF711QPL.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF354HPD bigWig signal p-value ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF056IMN, ENCFF556BOJ 501104193 ENCODE Processing Pipeline 18fdb652f1a5e87727d760e4d371806f https://www.encodeproject.org/files/ENCFF354HPD/@@download/ENCFF354HPD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF075CPS bigWig fold change over control ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF219FFX, ENCFF708TTS 651491830 ENCODE Processing Pipeline 75f3ebc8c6c436bc83fd560a2fc079e4 https://www.encodeproject.org/files/ENCFF075CPS/@@download/ENCFF075CPS.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF472PBT bigWig signal p-value ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF056IMN, ENCFF219FFX, ENCFF556BOJ, ENCFF708TTS 1076610777 ENCODE Processing Pipeline f45554d15e0e815bbb15823e04aff8dc https://www.encodeproject.org/files/ENCFF472PBT/@@download/ENCFF472PBT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF698ANQ bigWig fold change over control ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF056IMN, ENCFF556BOJ 652187583 ENCODE Processing Pipeline 28326afd2bf29fa2a6582ad16ffde865 https://www.encodeproject.org/files/ENCFF698ANQ/@@download/ENCFF698ANQ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF820QKT bigWig fold change over control ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF056IMN, ENCFF219FFX, ENCFF556BOJ, ENCFF708TTS 1161250860 ENCODE Processing Pipeline 4735d55564a7ad1e1e781ce164d5be45 https://www.encodeproject.org/files/ENCFF820QKT/@@download/ENCFF820QKT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF774CKJ bigBed narrowPeak replicated peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF331TPD 419135 ENCODE Processing Pipeline df8916026d624d936ce4288036f41990 https://www.encodeproject.org/files/ENCFF774CKJ/@@download/ENCFF774CKJ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF331TPD bed narrowPeak replicated peaks ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF317SFX, ENCFF619KPC, ENCFF924NNU 159984 ENCODE Processing Pipeline 4fe5e985de01b898b83dc944b9de7575 https://www.encodeproject.org/files/ENCFF331TPD/@@download/ENCFF331TPD.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF909TMB fastq reads ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2314055726 Bing Ren, UCSD 2895ba809dc1bff86e89b8466f094120 SRA:SRR3652979 https://www.encodeproject.org/files/ENCFF909TMB/@@download/ENCFF909TMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released inconsistent platforms ENCFF527HEG fastq reads ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2074391888 Bing Ren, UCSD be8269fc1a0b53c8063463a347ae2eab SRA:SRR3652978 https://www.encodeproject.org/files/ENCFF527HEG/@@download/ENCFF527HEG.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released inconsistent platforms ENCFF414HHB bam alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF909TMB 1861815601 ENCODE Processing Pipeline bcbbfc8fd33d0d06a56b75f326c26af8 https://www.encodeproject.org/files/ENCFF414HHB/@@download/ENCFF414HHB.bam mm10-minimal archived inconsistent platforms ENCFF966DWN bam alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF527HEG, ENCFF806TVZ 1771428128 ENCODE Processing Pipeline cd3d164c84aabfce6ca9cf23f9c62fb2 https://www.encodeproject.org/files/ENCFF966DWN/@@download/ENCFF966DWN.bam mm10-minimal archived inconsistent platforms ENCFF702ULH bed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF966DWN 627991 ENCODE Processing Pipeline 1f5a1990b9007a9e6f57cab830014eae https://www.encodeproject.org/files/ENCFF702ULH/@@download/ENCFF702ULH.bed.gz mm10-minimal archived inconsistent platforms ENCFF387XIW bed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF414HHB, ENCFF478WUL 721345 ENCODE Processing Pipeline c119fca44dc624d56f515b1cae9f41e2 https://www.encodeproject.org/files/ENCFF387XIW/@@download/ENCFF387XIW.bed.gz mm10-minimal archived inconsistent platforms ENCFF498XDN bed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF414HHB, ENCFF478WUL, ENCFF966DWN 724213 ENCODE Processing Pipeline 7c53b4adcdc0504effaeb22a6fe7171d https://www.encodeproject.org/files/ENCFF498XDN/@@download/ENCFF498XDN.bed.gz mm10-minimal archived inconsistent platforms ENCFF887DRI bigBed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF702ULH 1672587 ENCODE Processing Pipeline 879d627c8912a74808a47664654e2db5 https://www.encodeproject.org/files/ENCFF887DRI/@@download/ENCFF887DRI.bigBed mm10-minimal archived inconsistent platforms ENCFF591TID bigBed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF387XIW 1930252 ENCODE Processing Pipeline da20a23640d51db5b59510ece840c601 https://www.encodeproject.org/files/ENCFF591TID/@@download/ENCFF591TID.bigBed mm10-minimal archived inconsistent platforms ENCFF802HGU bigBed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF498XDN 1870933 ENCODE Processing Pipeline f197cbf4a3a0fd2e3b25474a07dfaad0 https://www.encodeproject.org/files/ENCFF802HGU/@@download/ENCFF802HGU.bigBed mm10-minimal archived inconsistent platforms ENCFF965IWC bigWig signal p-value ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF414HHB, ENCFF478WUL 767508924 ENCODE Processing Pipeline 62b09e2f35d7f45c8c90936957da8379 https://www.encodeproject.org/files/ENCFF965IWC/@@download/ENCFF965IWC.bigWig mm10-minimal archived inconsistent platforms ENCFF948UZC bigWig signal p-value ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF966DWN 639371805 ENCODE Processing Pipeline d88621f08d92314178173399720a5ace https://www.encodeproject.org/files/ENCFF948UZC/@@download/ENCFF948UZC.bigWig mm10-minimal archived inconsistent platforms ENCFF288WCS bigWig signal p-value ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF414HHB, ENCFF478WUL, ENCFF966DWN 833169947 ENCODE Processing Pipeline 653ab30cfd5f4d044cf8cb9307bb8c79 https://www.encodeproject.org/files/ENCFF288WCS/@@download/ENCFF288WCS.bigWig mm10-minimal archived inconsistent platforms ENCFF442LDR bigWig fold change over control ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF414HHB, ENCFF478WUL 860006883 ENCODE Processing Pipeline e04159a9bb280554fb8780b9bb98f789 https://www.encodeproject.org/files/ENCFF442LDR/@@download/ENCFF442LDR.bigWig mm10-minimal archived inconsistent platforms ENCFF860UXY bigWig fold change over control ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF966DWN 791846283 ENCODE Processing Pipeline 209828cf50e8657444e2ac69ff25af19 https://www.encodeproject.org/files/ENCFF860UXY/@@download/ENCFF860UXY.bigWig mm10-minimal archived inconsistent platforms ENCFF664MSL bigWig fold change over control ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF414HHB, ENCFF478WUL, ENCFF966DWN 1181002262 ENCODE Processing Pipeline 50be6328ae3b3b4fce34673f7238792b https://www.encodeproject.org/files/ENCFF664MSL/@@download/ENCFF664MSL.bigWig mm10-minimal archived inconsistent platforms ENCFF900YYT bigBed narrowPeak replicated peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF497NPG 1332678 ENCODE Processing Pipeline 5dedade491f2fb652c7f63d0b36fb281 https://www.encodeproject.org/files/ENCFF900YYT/@@download/ENCFF900YYT.bigBed mm10-minimal archived inconsistent platforms ENCFF497NPG bed narrowPeak replicated peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF387XIW, ENCFF498XDN, ENCFF702ULH 484051 ENCODE Processing Pipeline 00144add70992da67929a17aa62fbd61 https://www.encodeproject.org/files/ENCFF497NPG/@@download/ENCFF497NPG.bed.gz mm10-minimal archived inconsistent platforms ENCFF797OZI bam unfiltered alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF909TMB 2800772663 ENCODE Processing Pipeline 930492818732934dfd9c78deef45cb9f https://www.encodeproject.org/files/ENCFF797OZI/@@download/ENCFF797OZI.bam mm10 released inconsistent platforms ENCFF760FWX bam unfiltered alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF527HEG 2526056787 ENCODE Processing Pipeline ffd09c9eabbf0b03b2c24de3fd713043 https://www.encodeproject.org/files/ENCFF760FWX/@@download/ENCFF760FWX.bam mm10 released inconsistent platforms ENCFF785QDZ bam alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF527HEG 1770950632 ENCODE Processing Pipeline 8b46fd133f12c9b78757a8c641d69481 https://www.encodeproject.org/files/ENCFF785QDZ/@@download/ENCFF785QDZ.bam mm10 released inconsistent platforms ENCFF524LVP bam alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF909TMB 1861335835 ENCODE Processing Pipeline 9fd021c08c63d2f77c45f181ef9d8f37 https://www.encodeproject.org/files/ENCFF524LVP/@@download/ENCFF524LVP.bam mm10 released inconsistent platforms ENCFF127ZXD bed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF524LVP, ENCFF556BOJ 707274 ENCODE Processing Pipeline a2973c4018192f225a8cd62a9a547ddb https://www.encodeproject.org/files/ENCFF127ZXD/@@download/ENCFF127ZXD.bed.gz mm10 released inconsistent platforms ENCFF289SZE bed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF708TTS, ENCFF785QDZ 621466 ENCODE Processing Pipeline f8356c76e07679cb6cc3dcbcf4a80922 https://www.encodeproject.org/files/ENCFF289SZE/@@download/ENCFF289SZE.bed.gz mm10 released inconsistent platforms ENCFF794XMO bed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF524LVP, ENCFF556BOJ, ENCFF708TTS, ENCFF785QDZ 734137 ENCODE Processing Pipeline 405987a90e35191a96c33bc723c38e98 https://www.encodeproject.org/files/ENCFF794XMO/@@download/ENCFF794XMO.bed.gz mm10 released inconsistent platforms ENCFF464XTT bigBed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF127ZXD 1903978 ENCODE Processing Pipeline b6fbdfc83591514e513a417c9a5765f3 https://www.encodeproject.org/files/ENCFF464XTT/@@download/ENCFF464XTT.bigBed mm10 released inconsistent platforms ENCFF602XRE bigBed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF289SZE 1659062 ENCODE Processing Pipeline 8087bd8cf5ab1a31f0b5bd16843f61fa https://www.encodeproject.org/files/ENCFF602XRE/@@download/ENCFF602XRE.bigBed mm10 released inconsistent platforms ENCFF315BHZ bigBed narrowPeak peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF794XMO 1893972 ENCODE Processing Pipeline 5b7836227782b13019ee8696ae57eb9b https://www.encodeproject.org/files/ENCFF315BHZ/@@download/ENCFF315BHZ.bigBed mm10 released inconsistent platforms ENCFF836XTL bigWig signal p-value ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF524LVP, ENCFF556BOJ 728205340 ENCODE Processing Pipeline ce4ba352ce252b22a477c9a7a4562f10 https://www.encodeproject.org/files/ENCFF836XTL/@@download/ENCFF836XTL.bigWig mm10 released inconsistent platforms ENCFF553OEH bigWig signal p-value ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF708TTS, ENCFF785QDZ 556109782 ENCODE Processing Pipeline beda6184f5be5546b6b884ef4684a228 https://www.encodeproject.org/files/ENCFF553OEH/@@download/ENCFF553OEH.bigWig mm10 released inconsistent platforms ENCFF425CEF bigWig signal p-value ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF524LVP, ENCFF556BOJ, ENCFF708TTS, ENCFF785QDZ 1260649077 ENCODE Processing Pipeline 7e9bccc34e370ce66660cec33bcd7a56 https://www.encodeproject.org/files/ENCFF425CEF/@@download/ENCFF425CEF.bigWig mm10 released inconsistent platforms ENCFF693GJK bigWig fold change over control ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF524LVP, ENCFF556BOJ 749482892 ENCODE Processing Pipeline 65216b2892ff2cfb9832a2feeb562448 https://www.encodeproject.org/files/ENCFF693GJK/@@download/ENCFF693GJK.bigWig mm10 released inconsistent platforms ENCFF478CHC bigWig fold change over control ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF708TTS, ENCFF785QDZ 711097239 ENCODE Processing Pipeline 3c6b0498f2c81e8a56850cda20e8f6ad https://www.encodeproject.org/files/ENCFF478CHC/@@download/ENCFF478CHC.bigWig mm10 released inconsistent platforms ENCFF055NHC bigWig fold change over control ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF524LVP, ENCFF556BOJ, ENCFF708TTS, ENCFF785QDZ 1261564023 ENCODE Processing Pipeline 979cc9e3e42a569f3520cdbd496c5b5e https://www.encodeproject.org/files/ENCFF055NHC/@@download/ENCFF055NHC.bigWig mm10 released inconsistent platforms ENCFF674WXN bed narrowPeak replicated peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF127ZXD, ENCFF289SZE, ENCFF794XMO 478553 ENCODE Processing Pipeline d19b79fa9815f70ca8ee0fb10be0420b https://www.encodeproject.org/files/ENCFF674WXN/@@download/ENCFF674WXN.bed.gz mm10 released inconsistent platforms ENCFF121MBP bigBed narrowPeak replicated peaks ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF674WXN 1317209 ENCODE Processing Pipeline abd05499507e4491f7a2cdf9f0d613da https://www.encodeproject.org/files/ENCFF121MBP/@@download/ENCFF121MBP.bigBed mm10 released inconsistent platforms ENCFF618USE fastq reads ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3490840131 Bing Ren, UCSD 3de6b4f47c614e8f19a55e95455461f1 SRA:SRR3653402 https://www.encodeproject.org/files/ENCFF618USE/@@download/ENCFF618USE.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF091XIS fastq reads ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2302447140 Bing Ren, UCSD bc63815eb518c6bdcab4e9b04f8069ac SRA:SRR3653398 https://www.encodeproject.org/files/ENCFF091XIS/@@download/ENCFF091XIS.fastq.gz Illumina HiSeq 2500 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF747OOK fastq reads ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 377392246 Bing Ren, UCSD 0b2324f997519ae6de6c00976ffdaaef SRA:SRR3653399 https://www.encodeproject.org/files/ENCFF747OOK/@@download/ENCFF747OOK.fastq.gz Illumina HiSeq 2000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF087UEM bam alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF091XIS, ENCFF747OOK, ENCFF806TVZ 2112125872 ENCODE Processing Pipeline 20345dc333633c919eadfab6067b046c https://www.encodeproject.org/files/ENCFF087UEM/@@download/ENCFF087UEM.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF478WUL bam alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF618USE, ENCFF806TVZ 2597472255 ENCODE Processing Pipeline ca2850e4509fc845350cbbbcb9dbd1dd https://www.encodeproject.org/files/ENCFF478WUL/@@download/ENCFF478WUL.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF771MNJ fastq reads ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 358515916 Bing Ren, UCSD 5f2c2a7d668ccd79b04a3003660cb2b1 SRA:SRR3653400 https://www.encodeproject.org/files/ENCFF771MNJ/@@download/ENCFF771MNJ.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF271NJE fastq reads ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 4 50 single-ended 793069604 Bing Ren, UCSD b90ca0b18e5152d732506fe355ffb1a8 SRA:SRR3653401 https://www.encodeproject.org/files/ENCFF271NJE/@@download/ENCFF271NJE.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF518NNC fastq reads ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 309203706 Bing Ren, UCSD 353b64d73150a4b44ccd5127232d1754 SRA:SRR3653403 https://www.encodeproject.org/files/ENCFF518NNC/@@download/ENCFF518NNC.fastq.gz Illumina HiSeq 4000 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF182XFG bam unfiltered alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018NEO, ENCFF091XIS, ENCFF271NJE, ENCFF747OOK, ENCFF771MNJ 4931020994 ENCODE Processing Pipeline 0438d0834345571bc93ec2275e658c2f https://www.encodeproject.org/files/ENCFF182XFG/@@download/ENCFF182XFG.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF556BOJ bam alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF518NNC, ENCFF618USE 2935455517 ENCODE Processing Pipeline 73276f00922ac268929d0a24030bca1c https://www.encodeproject.org/files/ENCFF556BOJ/@@download/ENCFF556BOJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF727QTS bam unfiltered alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF018NEO, ENCFF518NNC, ENCFF618USE 4664318046 ENCODE Processing Pipeline 2b45372027a772205452af65aeb58603 https://www.encodeproject.org/files/ENCFF727QTS/@@download/ENCFF727QTS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF708TTS bam alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF091XIS, ENCFF271NJE, ENCFF747OOK, ENCFF771MNJ 3276568337 ENCODE Processing Pipeline ba5f4951a0ba7a985678de31869822f0 https://www.encodeproject.org/files/ENCFF708TTS/@@download/ENCFF708TTS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KZT bigBed broadPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZS 241814 Bing Ren, UCSD 2291eb2056f53e01dbf90844e64ef96e https://www.encodeproject.org/files/ENCFF001KZT/@@download/ENCFF001KZT.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZW bigWig signal ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KZX, ENCFF001KZY 74981317 Bing Ren, UCSD b093d9a0fcfc1f18aac9147c52ddd9fc https://www.encodeproject.org/files/ENCFF001KZW/@@download/ENCFF001KZW.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZX bam alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001LAF 1520897060 Bing Ren, UCSD 9a2b5beab9035f1f98936cdf1ea08e4f https://www.encodeproject.org/files/ENCFF001KZX/@@download/ENCFF001KZX.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001KZY bam alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001LAH 1298054288 Bing Ren, UCSD 0c492c65bfc7ad119c024582b03b608b https://www.encodeproject.org/files/ENCFF001KZY/@@download/ENCFF001KZY.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAF fastq reads ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1538642080 Bing Ren, UCSD 925284ca2373babb2d5b08e01cbd9c25 https://www.encodeproject.org/files/ENCFF001LAF/@@download/ENCFF001LAF.fastq.gz Illumina HiSeq 2000 /files/ENCFF786ODW/ archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001LAH fastq reads ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1331885591 Bing Ren, UCSD 1dd3e642b81acfe14b03f4ea6fabb350 https://www.encodeproject.org/files/ENCFF001LAH/@@download/ENCFF001LAH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001LAO/ archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF001XZS bed broadPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KZX, ENCFF001KZY 142576 Bing Ren, UCSD 946302d19092a6b3c9f1e102b6acee8f https://www.encodeproject.org/files/ENCFF001XZS/@@download/ENCFF001XZS.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF810BML bam alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001LAH, ENCFF806TVZ 503350062 ENCODE Processing Pipeline 82d0711eacab96083a0c33066ab2c45a https://www.encodeproject.org/files/ENCFF810BML/@@download/ENCFF810BML.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF893SYV bam alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001LAF, ENCFF806TVZ 677738001 ENCODE Processing Pipeline 608f143b06f1ad05c0fedc679013f929 https://www.encodeproject.org/files/ENCFF893SYV/@@download/ENCFF893SYV.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF426UJG bam unfiltered alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001LAF, ENCFF018NEO 1452112242 ENCODE Processing Pipeline cafa250eba60ca6c842deeb62f70a622 https://www.encodeproject.org/files/ENCFF426UJG/@@download/ENCFF426UJG.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF667VSR bam unfiltered alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001LAH, ENCFF018NEO 1238017165 ENCODE Processing Pipeline 203c45b1ac457784d2557aabc5821a2e https://www.encodeproject.org/files/ENCFF667VSR/@@download/ENCFF667VSR.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF477NXF bam alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001LAF, ENCFF018NEO 594067319 ENCODE Processing Pipeline 8c067678118be83b0c5b21ab37a7e2a5 https://www.encodeproject.org/files/ENCFF477NXF/@@download/ENCFF477NXF.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF830FOM bam alignments ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001LAH, ENCFF018NEO 439407302 ENCODE Processing Pipeline abac8fecdf0855f8f883ed8ad97c089d https://www.encodeproject.org/files/ENCFF830FOM/@@download/ENCFF830FOM.bam mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF497NJT bigWig signal p-value ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF477NXF, ENCFF830FOM 453825489 ENCODE Processing Pipeline 212f688b6a546b7c6c7f20d2d7f5be94 https://www.encodeproject.org/files/ENCFF497NJT/@@download/ENCFF497NJT.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF912LVI bed narrowPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF830FOM 1036877 ENCODE Processing Pipeline e7f134e40c24142cb263e0ff4bf2c88f https://www.encodeproject.org/files/ENCFF912LVI/@@download/ENCFF912LVI.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF744UVU bigBed narrowPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF912LVI 2722624 ENCODE Processing Pipeline b1dbb7938a884dc7f0f9cea5e6ae2ffc https://www.encodeproject.org/files/ENCFF744UVU/@@download/ENCFF744UVU.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF117FEN bigWig fold change over control ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF477NXF, ENCFF830FOM 462558300 ENCODE Processing Pipeline 64eb6cea0b16e3c0d6be80d4b25c8ed7 https://www.encodeproject.org/files/ENCFF117FEN/@@download/ENCFF117FEN.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF642DDO bigBed narrowPeak replicated peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF682UGG 1186211 ENCODE Processing Pipeline 70a044ec71a72c472c7d2ebf64a98daa https://www.encodeproject.org/files/ENCFF642DDO/@@download/ENCFF642DDO.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF131OMU bed narrowPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF477NXF 1277283 ENCODE Processing Pipeline 3ea72350366b0aafa7bda3587de3bae2 https://www.encodeproject.org/files/ENCFF131OMU/@@download/ENCFF131OMU.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF910FZS bigBed narrowPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF763CNX 2783346 ENCODE Processing Pipeline 870f209332000ccd77349a4cf02ea2cb https://www.encodeproject.org/files/ENCFF910FZS/@@download/ENCFF910FZS.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF216TQS bigWig signal p-value ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF477NXF 372500998 ENCODE Processing Pipeline d852b2ec436de94ed135b7ae0a61fff0 https://www.encodeproject.org/files/ENCFF216TQS/@@download/ENCFF216TQS.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF213ZVQ bigWig signal p-value ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF830FOM 347809351 ENCODE Processing Pipeline 851c5dc5ad28301c235915a8697ebcfa https://www.encodeproject.org/files/ENCFF213ZVQ/@@download/ENCFF213ZVQ.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF763CNX bed narrowPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF132CII, ENCFF379WSY, ENCFF477NXF, ENCFF830FOM 923850 ENCODE Processing Pipeline 03ef6d8a9e1f749909f7dc555b209d0d https://www.encodeproject.org/files/ENCFF763CNX/@@download/ENCFF763CNX.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF073YCX bigBed narrowPeak peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF131OMU 3407251 ENCODE Processing Pipeline a76f532caf2b954591f5b7161c01771e https://www.encodeproject.org/files/ENCFF073YCX/@@download/ENCFF073YCX.bigBed mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF795RHB bigWig fold change over control ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF132CII, ENCFF379WSY, ENCFF477NXF 302474599 ENCODE Processing Pipeline b43bc34f1c447decec28514048f8c0ef https://www.encodeproject.org/files/ENCFF795RHB/@@download/ENCFF795RHB.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF373BTO bigWig fold change over control ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF132CII, ENCFF379WSY, ENCFF830FOM 244023837 ENCODE Processing Pipeline 336a19e40caf07abd5fddc1d799d75b6 https://www.encodeproject.org/files/ENCFF373BTO/@@download/ENCFF373BTO.bigWig mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF682UGG bed narrowPeak replicated peaks ENCSR000CGD ChIP-seq UBERON:0000955 brain tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF131OMU, ENCFF763CNX, ENCFF912LVI 517998 ENCODE Processing Pipeline d1f6c47dc6f110071d9ae207f1cf3cd2 https://www.encodeproject.org/files/ENCFF682UGG/@@download/ENCFF682UGG.bed.gz mm10 archived low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms missing unfiltered alignments insufficient read depth, control insufficient read depth ENCFF643VUJ fastq reads ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1757667699 Bing Ren, UCSD a6d4f9366f21fb07a1cf6e17c1c09960 SRA:SRR4235765 https://www.encodeproject.org/files/ENCFF643VUJ/@@download/ENCFF643VUJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF814HQS/ released mild to moderate bottlenecking ENCFF616SZN fastq reads ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2536821367 Bing Ren, UCSD 28c3669294c7751670150c9549b9b498 SRA:SRR4235764 https://www.encodeproject.org/files/ENCFF616SZN/@@download/ENCFF616SZN.fastq.gz Illumina HiSeq 4000 /files/ENCFF126KYO/ released mild to moderate bottlenecking ENCFF405FUG bam unfiltered alignments ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF616SZN 3198828445 ENCODE Processing Pipeline 00ef6c402635627e1969bff84ec6a3d6 https://www.encodeproject.org/files/ENCFF405FUG/@@download/ENCFF405FUG.bam mm10 released mild to moderate bottlenecking ENCFF015WJQ bam unfiltered alignments ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF643VUJ 2374232001 ENCODE Processing Pipeline 4f11bea92a9670d645418a79e81b4bd6 https://www.encodeproject.org/files/ENCFF015WJQ/@@download/ENCFF015WJQ.bam mm10 released mild to moderate bottlenecking ENCFF722INF bam alignments ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF643VUJ 1834008070 ENCODE Processing Pipeline 42e713e17cacf11a1df1510a9d9c9a42 https://www.encodeproject.org/files/ENCFF722INF/@@download/ENCFF722INF.bam mm10 released mild to moderate bottlenecking ENCFF328STI bam alignments ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF616SZN 2413252939 ENCODE Processing Pipeline 37a3765c0be7402a2b12d84dff84f94e https://www.encodeproject.org/files/ENCFF328STI/@@download/ENCFF328STI.bam mm10 released mild to moderate bottlenecking ENCFF796QQT bed narrowPeak peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF328STI, ENCFF689YLF, ENCFF778IFH 2283242 ENCODE Processing Pipeline ab95416820ad4db0dd76da074b840402 https://www.encodeproject.org/files/ENCFF796QQT/@@download/ENCFF796QQT.bed.gz mm10 released mild to moderate bottlenecking ENCFF072MXS bigBed narrowPeak peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF796QQT 6215135 ENCODE Processing Pipeline a7b27c10b2b5cd93ebe4fb1cdd4ee555 https://www.encodeproject.org/files/ENCFF072MXS/@@download/ENCFF072MXS.bigBed mm10 released mild to moderate bottlenecking ENCFF330LXV bigWig signal p-value ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF328STI, ENCFF689YLF, ENCFF778IFH 847011199 ENCODE Processing Pipeline 3ba6dbb564f3c89181ed29c199c5b7d8 https://www.encodeproject.org/files/ENCFF330LXV/@@download/ENCFF330LXV.bigWig mm10 released mild to moderate bottlenecking ENCFF338MVQ bed narrowPeak peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF689YLF, ENCFF722INF 2106234 ENCODE Processing Pipeline 37f46b051b334e3e5aa8176c3efc1c85 https://www.encodeproject.org/files/ENCFF338MVQ/@@download/ENCFF338MVQ.bed.gz mm10 released mild to moderate bottlenecking ENCFF246XPE bed narrowPeak peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF328STI, ENCFF689YLF, ENCFF722INF, ENCFF778IFH 2964423 ENCODE Processing Pipeline 8b51a36877e80dd6c1969c2909aa8bcb https://www.encodeproject.org/files/ENCFF246XPE/@@download/ENCFF246XPE.bed.gz mm10 released mild to moderate bottlenecking ENCFF458JFH bigBed narrowPeak peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF338MVQ 4594633 ENCODE Processing Pipeline cbe78d256993b38076c6f1af835d33cb https://www.encodeproject.org/files/ENCFF458JFH/@@download/ENCFF458JFH.bigBed mm10 released mild to moderate bottlenecking ENCFF345LXI bigBed narrowPeak peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF246XPE 7819852 ENCODE Processing Pipeline ad23caeefcd73c4a5ad4a51d0d878ddf https://www.encodeproject.org/files/ENCFF345LXI/@@download/ENCFF345LXI.bigBed mm10 released mild to moderate bottlenecking ENCFF017WED bigWig signal p-value ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF689YLF, ENCFF722INF 736792016 ENCODE Processing Pipeline 3ee2add91499521d94c940f9254ebc39 https://www.encodeproject.org/files/ENCFF017WED/@@download/ENCFF017WED.bigWig mm10 released mild to moderate bottlenecking ENCFF796FAE bigWig signal p-value ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF328STI, ENCFF689YLF, ENCFF722INF, ENCFF778IFH 1111229107 ENCODE Processing Pipeline 22bc4d8f61ec860f00761b55caa48385 https://www.encodeproject.org/files/ENCFF796FAE/@@download/ENCFF796FAE.bigWig mm10 released mild to moderate bottlenecking ENCFF288EOP bigWig fold change over control ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF328STI, ENCFF689YLF, ENCFF778IFH 1109785020 ENCODE Processing Pipeline d23fd0d64714d581a92c5bb00e1d0660 https://www.encodeproject.org/files/ENCFF288EOP/@@download/ENCFF288EOP.bigWig mm10 released mild to moderate bottlenecking ENCFF935ZXD bigWig fold change over control ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF689YLF, ENCFF722INF 738744336 ENCODE Processing Pipeline 24d4a960c21444a04abf86d50d004207 https://www.encodeproject.org/files/ENCFF935ZXD/@@download/ENCFF935ZXD.bigWig mm10 released mild to moderate bottlenecking ENCFF266KHC bigWig fold change over control ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF328STI, ENCFF689YLF, ENCFF722INF, ENCFF778IFH 1499350339 ENCODE Processing Pipeline 0b027eeab0549008b06ebc1647b94680 https://www.encodeproject.org/files/ENCFF266KHC/@@download/ENCFF266KHC.bigWig mm10 released mild to moderate bottlenecking ENCFF014HMN bed narrowPeak replicated peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF246XPE, ENCFF338MVQ, ENCFF796QQT 1986532 ENCODE Processing Pipeline 5dadae0d40b77706da7d2c92408e4998 https://www.encodeproject.org/files/ENCFF014HMN/@@download/ENCFF014HMN.bed.gz mm10 released mild to moderate bottlenecking ENCFF887RGY bigBed narrowPeak replicated peaks ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF014HMN 4198816 ENCODE Processing Pipeline abfba121fdb4dbf8439851e9abb9aaa2 https://www.encodeproject.org/files/ENCFF887RGY/@@download/ENCFF887RGY.bigBed mm10 released mild to moderate bottlenecking ENCFF001KWP bigBed broadPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZH 277478 Bing Ren, UCSD 8bd098d421d6f802bfd1250624eadb2a https://www.encodeproject.org/files/ENCFF001KWP/@@download/ENCFF001KWP.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KWQ bam alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KXC 1716865560 Bing Ren, UCSD 1d676bc9710862cbcad755f31ebacc8e https://www.encodeproject.org/files/ENCFF001KWQ/@@download/ENCFF001KWQ.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KWR bam alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KXB 1741872624 Bing Ren, UCSD a3cc7bd45f56242c1be2f3a8935daa8f https://www.encodeproject.org/files/ENCFF001KWR/@@download/ENCFF001KWR.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KWS bigWig signal ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KWQ, ENCFF001KWR 86772048 Bing Ren, UCSD 43ee98f866c7981883eae1f622c075f1 https://www.encodeproject.org/files/ENCFF001KWS/@@download/ENCFF001KWS.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KXB fastq reads ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1699784685 Bing Ren, UCSD 068294766fd43051202b012bc79f98c1 https://www.encodeproject.org/files/ENCFF001KXB/@@download/ENCFF001KXB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXN/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KXC fastq reads ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1698841379 Bing Ren, UCSD 02671ade2955c7b3792d105bd38137f5 https://www.encodeproject.org/files/ENCFF001KXC/@@download/ENCFF001KXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KXE/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001XZH bed broadPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KWQ, ENCFF001KWR 144265 Bing Ren, UCSD 47d6eb030bc43a3cd4316b45202eb73c https://www.encodeproject.org/files/ENCFF001XZH/@@download/ENCFF001XZH.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF606ADG bam unfiltered alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KXB, ENCFF018NEO 1897832323 ENCODE Processing Pipeline 7e0c1c9a1c6344275d0489ce5481d39c https://www.encodeproject.org/files/ENCFF606ADG/@@download/ENCFF606ADG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF025PPP bam unfiltered alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KXC, ENCFF018NEO 1860613864 ENCODE Processing Pipeline 3e11ad49edfa8376dbbf2c3378e19698 https://www.encodeproject.org/files/ENCFF025PPP/@@download/ENCFF025PPP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF643BVP bam alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KXC, ENCFF018NEO 733324851 ENCODE Processing Pipeline 9033604e4f17cb39e59574ca4495e1b0 https://www.encodeproject.org/files/ENCFF643BVP/@@download/ENCFF643BVP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF573UHN bam alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KXB, ENCFF018NEO 856331480 ENCODE Processing Pipeline e8672933ba89322b3eb9a3ee05c632ba https://www.encodeproject.org/files/ENCFF573UHN/@@download/ENCFF573UHN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF197MLV bed narrowPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF288QPC, ENCFF573UHN, ENCFF643BVP, ENCFF942MHC 52373 ENCODE Processing Pipeline 1bc133b5e398f35575a3e903f92f736a https://www.encodeproject.org/files/ENCFF197MLV/@@download/ENCFF197MLV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF036FZM bed narrowPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF288QPC, ENCFF643BVP, ENCFF942MHC 180905 ENCODE Processing Pipeline 3148b0794c4b9fa1dfda3a3b43cf653b https://www.encodeproject.org/files/ENCFF036FZM/@@download/ENCFF036FZM.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF471MDV bed narrowPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF288QPC, ENCFF573UHN, ENCFF942MHC 58209 ENCODE Processing Pipeline e1d8605555dd3bc43d25e10c828502db https://www.encodeproject.org/files/ENCFF471MDV/@@download/ENCFF471MDV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF826IMB bigBed narrowPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF036FZM 398902 ENCODE Processing Pipeline ff47b349474fca4582557c9dc64cc927 https://www.encodeproject.org/files/ENCFF826IMB/@@download/ENCFF826IMB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF559XYE bigBed narrowPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF471MDV 183655 ENCODE Processing Pipeline d7585d361fd43e22f9ed684063b57866 https://www.encodeproject.org/files/ENCFF559XYE/@@download/ENCFF559XYE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF335IOG bigBed narrowPeak peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF197MLV 216452 ENCODE Processing Pipeline 532c970a5d9f39f9ed3867a5c2f48ee1 https://www.encodeproject.org/files/ENCFF335IOG/@@download/ENCFF335IOG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF641HWY bigWig signal p-value ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF288QPC, ENCFF573UHN, ENCFF942MHC 166936365 ENCODE Processing Pipeline cf23aaea0f90ae12fd220fdd12ccd67f https://www.encodeproject.org/files/ENCFF641HWY/@@download/ENCFF641HWY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF892SCW bigWig signal p-value ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF288QPC, ENCFF643BVP, ENCFF942MHC 196223224 ENCODE Processing Pipeline b4055d3c23c5251a7c3bfc0f90920557 https://www.encodeproject.org/files/ENCFF892SCW/@@download/ENCFF892SCW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF740PGS bigWig signal p-value ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF288QPC, ENCFF573UHN, ENCFF643BVP, ENCFF942MHC 181549812 ENCODE Processing Pipeline 3348ac59051285fee97c680b134ef8db https://www.encodeproject.org/files/ENCFF740PGS/@@download/ENCFF740PGS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF055KIF bigWig fold change over control ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF288QPC, ENCFF573UHN, ENCFF942MHC 264762676 ENCODE Processing Pipeline 90b8a1037aeb5ca481f7a7db6ef3f36c https://www.encodeproject.org/files/ENCFF055KIF/@@download/ENCFF055KIF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF255QJN bigWig fold change over control ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF288QPC, ENCFF643BVP, ENCFF942MHC 231603989 ENCODE Processing Pipeline d41ccb43b0189c53fa9aef9ed8b69889 https://www.encodeproject.org/files/ENCFF255QJN/@@download/ENCFF255QJN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF443EON bigWig fold change over control ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF288QPC, ENCFF573UHN, ENCFF643BVP, ENCFF942MHC 448395152 ENCODE Processing Pipeline f1bdabfecfa321311210609d104f80c5 https://www.encodeproject.org/files/ENCFF443EON/@@download/ENCFF443EON.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF412FRA bed narrowPeak replicated peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF036FZM, ENCFF197MLV, ENCFF471MDV 34861 ENCODE Processing Pipeline 2b10e4aca5aa80bc31ecd40d93b76cad https://www.encodeproject.org/files/ENCFF412FRA/@@download/ENCFF412FRA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF221IXJ bigBed narrowPeak replicated peaks ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF412FRA 170789 ENCODE Processing Pipeline 483f1118e1efc6746867ab7735ac7830 https://www.encodeproject.org/files/ENCFF221IXJ/@@download/ENCFF221IXJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001LNI bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LNT 375067465 Bing Ren, UCSD 0589072114913501918356f5b55490f8 https://www.encodeproject.org/files/ENCFF001LNI/@@download/ENCFF001LNI.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LNK bigBed broadPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAO 479362 Bing Ren, UCSD 63720ee09bef38cefb496ed65a10e3c1 https://www.encodeproject.org/files/ENCFF001LNK/@@download/ENCFF001LNK.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LNL bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LNS 376392816 Bing Ren, UCSD e8a4452954df6e5fb34946dd8d36c8eb https://www.encodeproject.org/files/ENCFF001LNL/@@download/ENCFF001LNL.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LNM bigWig signal ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNI, ENCFF001LNL 58594405 Bing Ren, UCSD c611ddf16528e1706fcaaf7fe555895a https://www.encodeproject.org/files/ENCFF001LNM/@@download/ENCFF001LNM.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LNS fastq reads ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 880486987 Bing Ren, UCSD 44dd98606d96b8baf6c672f64df17c97 https://www.encodeproject.org/files/ENCFF001LNS/@@download/ENCFF001LNS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOV/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001LNT fastq reads ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 870712159 Bing Ren, UCSD 358761a2b5d436ad8f2793879ae933e6 https://www.encodeproject.org/files/ENCFF001LNT/@@download/ENCFF001LNT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOQ/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF001YAO bed broadPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNI, ENCFF001LNL 338933 Bing Ren, UCSD 1ad12ced14c54ca786c243175745ea7d https://www.encodeproject.org/files/ENCFF001YAO/@@download/ENCFF001YAO.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF864IVP bam unfiltered alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 936384002 ENCODE Processing Pipeline 6f77325a8a67518136f68daaa8efaa3b https://www.encodeproject.org/files/ENCFF864IVP/@@download/ENCFF864IVP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF554XVK bam unfiltered alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 908493499 ENCODE Processing Pipeline f3b42ad9d6e5afa837e29d2be4fab114 https://www.encodeproject.org/files/ENCFF554XVK/@@download/ENCFF554XVK.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF597HPS bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 382783589 ENCODE Processing Pipeline ee7679aba57565384a9287ebcb8e687b https://www.encodeproject.org/files/ENCFF597HPS/@@download/ENCFF597HPS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF654LDN bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 353968665 ENCODE Processing Pipeline 40a133f777ed535db675c746eddcfcdd https://www.encodeproject.org/files/ENCFF654LDN/@@download/ENCFF654LDN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF168RMI bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 136308262 ENCODE Processing Pipeline 460c9eeaf62cf77c5a779d39931c0196 https://www.encodeproject.org/files/ENCFF168RMI/@@download/ENCFF168RMI.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF367LMD bed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 2073420 ENCODE Processing Pipeline e26c087a0afaad67ce0f950d21359bfc https://www.encodeproject.org/files/ENCFF367LMD/@@download/ENCFF367LMD.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF967TRS bed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 1691191 ENCODE Processing Pipeline 59f06ef9aa1f9d701fdf508e24767b85 https://www.encodeproject.org/files/ENCFF967TRS/@@download/ENCFF967TRS.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF695XKZ bed narrowPeak conservative idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF367LMD, ENCFF547MET, ENCFF678KWQ, ENCFF967TRS 427494 ENCODE Processing Pipeline bda6dc1e2f0afd65f75f8a97ed5a69c6 https://www.encodeproject.org/files/ENCFF695XKZ/@@download/ENCFF695XKZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF678KWQ bed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 2168111 ENCODE Processing Pipeline dd1256d9fd84bd087f77942eb7cf27ff https://www.encodeproject.org/files/ENCFF678KWQ/@@download/ENCFF678KWQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF008AYP bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 238227314 ENCODE Processing Pipeline c2c7bf3ab901ca117688a7b20805fed1 https://www.encodeproject.org/files/ENCFF008AYP/@@download/ENCFF008AYP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF176AHK bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 120813518 ENCODE Processing Pipeline da5032cc03fa2f2ac92d5a92beaa7c42 https://www.encodeproject.org/files/ENCFF176AHK/@@download/ENCFF176AHK.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF870YTE bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 240545943 ENCODE Processing Pipeline 893441dc9d6a74d103bfebeb7578733b https://www.encodeproject.org/files/ENCFF870YTE/@@download/ENCFF870YTE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF538KBR bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 229026468 ENCODE Processing Pipeline 24bfc3b08a1b4f33b5d9d09745e75db3 https://www.encodeproject.org/files/ENCFF538KBR/@@download/ENCFF538KBR.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF575GVY bigBed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF678KWQ 4690753 ENCODE Processing Pipeline 6a6ffe8c4245a46d22636d192585b8c6 https://www.encodeproject.org/files/ENCFF575GVY/@@download/ENCFF575GVY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF634XVK bigBed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF367LMD 4331148 ENCODE Processing Pipeline bf3a59d4bac3c75db56a79e7b57e565f https://www.encodeproject.org/files/ENCFF634XVK/@@download/ENCFF634XVK.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF787KIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF695XKZ 854411 ENCODE Processing Pipeline df74c7a41347b87db9c1896ab7e9ef09 https://www.encodeproject.org/files/ENCFF787KIM/@@download/ENCFF787KIM.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF605YVN bed narrowPeak optimal idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF367LMD, ENCFF547MET, ENCFF678KWQ, ENCFF967TRS 488435 ENCODE Processing Pipeline 2425e89fc649dea77d09fe3ed033bd3e https://www.encodeproject.org/files/ENCFF605YVN/@@download/ENCFF605YVN.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF171COP bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 196445285 ENCODE Processing Pipeline 356c1f28182b9612cbac9ef585a3eaaa https://www.encodeproject.org/files/ENCFF171COP/@@download/ENCFF171COP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF826REH bigBed narrowPeak peaks and background as input for IDR ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF967TRS 3968024 ENCODE Processing Pipeline 6102292b8c43ba0e66d26e064a6b6cb0 https://www.encodeproject.org/files/ENCFF826REH/@@download/ENCFF826REH.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF210RWO bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF605YVN 946650 ENCODE Processing Pipeline ae8b344f6e069b202cb0945655aab06c https://www.encodeproject.org/files/ENCFF210RWO/@@download/ENCFF210RWO.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF002ANV fastq reads ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1223124079 Bing Ren, UCSD 2fae331246a831a3ad11abea6d717732 SRA:SRR3653244 https://www.encodeproject.org/files/ENCFF002ANV/@@download/ENCFF002ANV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARI/ released low read length, control low read depth, low read depth ENCFF002ANW fastq reads ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1314861609 Bing Ren, UCSD 5a385725dc753a1b9b151a54bee05045 SRA:SRR3653245 https://www.encodeproject.org/files/ENCFF002ANW/@@download/ENCFF002ANW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARL/ released low read length, control low read depth, low read depth ENCFF677GKL bam alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANW, ENCFF806TVZ 877265147 ENCODE Processing Pipeline cf22a575ffbe6042d1b1cacf49c8ff16 https://www.encodeproject.org/files/ENCFF677GKL/@@download/ENCFF677GKL.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF335HGH bam alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANV, ENCFF806TVZ 823620640 ENCODE Processing Pipeline e664a9e0272b39ccfc79d0aa7e356a11 https://www.encodeproject.org/files/ENCFF335HGH/@@download/ENCFF335HGH.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF228BXU bed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF335HGH, ENCFF946XCS 501630 ENCODE Processing Pipeline 41a519fcc84917d35b83e43e13f811c5 https://www.encodeproject.org/files/ENCFF228BXU/@@download/ENCFF228BXU.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF750MLS bed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF677GKL, ENCFF946XCS 484658 ENCODE Processing Pipeline 3f236680d4e91312a8910285e72302a9 https://www.encodeproject.org/files/ENCFF750MLS/@@download/ENCFF750MLS.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF717MAC bed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF335HGH, ENCFF677GKL, ENCFF946XCS 487759 ENCODE Processing Pipeline 82f30e069666909ceff33747c3df96a9 https://www.encodeproject.org/files/ENCFF717MAC/@@download/ENCFF717MAC.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF579NII bigBed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF228BXU 1348498 ENCODE Processing Pipeline f2e1b3c43d05fe851b4707d181130cee https://www.encodeproject.org/files/ENCFF579NII/@@download/ENCFF579NII.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF882ZOR bigBed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF750MLS 1647813 ENCODE Processing Pipeline cc0b448cdca7ff89a97c2319fdc63ab0 https://www.encodeproject.org/files/ENCFF882ZOR/@@download/ENCFF882ZOR.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF134BOP bigBed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF717MAC 1659565 ENCODE Processing Pipeline 14764f3d43611575598d24ceff95af90 https://www.encodeproject.org/files/ENCFF134BOP/@@download/ENCFF134BOP.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF022RBI bigWig signal p-value ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF335HGH, ENCFF946XCS 360025906 ENCODE Processing Pipeline 66017f2f7274b38e5fe885597fcba129 https://www.encodeproject.org/files/ENCFF022RBI/@@download/ENCFF022RBI.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF916NYT bigWig signal p-value ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF677GKL, ENCFF946XCS 384074807 ENCODE Processing Pipeline c908d7a671608af525d53c31e39336aa https://www.encodeproject.org/files/ENCFF916NYT/@@download/ENCFF916NYT.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF840WIO bigWig signal p-value ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF335HGH, ENCFF677GKL, ENCFF946XCS 615193119 ENCODE Processing Pipeline 7d0fa8887ee5967ca0f59a18996ca1fb https://www.encodeproject.org/files/ENCFF840WIO/@@download/ENCFF840WIO.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF255EQL bigWig fold change over control ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF335HGH, ENCFF946XCS 394804477 ENCODE Processing Pipeline 705df20d0848687b26c42f22ab01bb2c https://www.encodeproject.org/files/ENCFF255EQL/@@download/ENCFF255EQL.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF077MRW bigWig fold change over control ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF335HGH, ENCFF677GKL, ENCFF946XCS 633942329 ENCODE Processing Pipeline 1b6d8147dd2c58b172bd2a0c4f76ec13 https://www.encodeproject.org/files/ENCFF077MRW/@@download/ENCFF077MRW.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF053LPA bigWig fold change over control ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF677GKL, ENCFF946XCS 413699700 ENCODE Processing Pipeline bb68081995526bd1a2bbffbfc6b7deb9 https://www.encodeproject.org/files/ENCFF053LPA/@@download/ENCFF053LPA.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF601RKR bed narrowPeak replicated peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF228BXU, ENCFF717MAC, ENCFF750MLS 545491 ENCODE Processing Pipeline 04e6c3440563bd445946d5f62b325140 https://www.encodeproject.org/files/ENCFF601RKR/@@download/ENCFF601RKR.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF098NIO bigBed narrowPeak replicated peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF601RKR 1481186 ENCODE Processing Pipeline 5099cc113186e93b9a0834ede9166424 https://www.encodeproject.org/files/ENCFF098NIO/@@download/ENCFF098NIO.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF892WRZ bam unfiltered alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANV, ENCFF018NEO 1290280973 ENCODE Processing Pipeline 3701bd3355495c2f11b0dddd22ee30d4 https://www.encodeproject.org/files/ENCFF892WRZ/@@download/ENCFF892WRZ.bam mm10 released low read length, control low read depth, low read depth ENCFF263YOR bam unfiltered alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANW, ENCFF018NEO 1366852914 ENCODE Processing Pipeline 420ababb7906b7ac29a6f9f03a9f8159 https://www.encodeproject.org/files/ENCFF263YOR/@@download/ENCFF263YOR.bam mm10 released low read length, control low read depth, low read depth ENCFF191MHA bam alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANV, ENCFF018NEO 823354268 ENCODE Processing Pipeline 910b62e3ac4bd3ee6421a3ee01a8545b https://www.encodeproject.org/files/ENCFF191MHA/@@download/ENCFF191MHA.bam mm10 released low read length, control low read depth, low read depth ENCFF497XVC bam alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANW, ENCFF018NEO 877031067 ENCODE Processing Pipeline fba2dd3733af20d8934b4c0681f997ed https://www.encodeproject.org/files/ENCFF497XVC/@@download/ENCFF497XVC.bam mm10 released low read length, control low read depth, low read depth ENCFF041VAL bed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF191MHA, ENCFF292SSW, ENCFF482UTL 501609 ENCODE Processing Pipeline 6a35df6ea562ebc40c862c2729eaa821 https://www.encodeproject.org/files/ENCFF041VAL/@@download/ENCFF041VAL.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF976ELA bed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF482UTL, ENCFF497XVC 457075 ENCODE Processing Pipeline 847c95e930f454489a0b9cef2028a374 https://www.encodeproject.org/files/ENCFF976ELA/@@download/ENCFF976ELA.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF029GZK bed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF191MHA, ENCFF292SSW, ENCFF482UTL, ENCFF497XVC 488710 ENCODE Processing Pipeline c9a3e3f61018a8d83558257ddabac3cd https://www.encodeproject.org/files/ENCFF029GZK/@@download/ENCFF029GZK.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF127GNO bigBed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF041VAL 1350357 ENCODE Processing Pipeline 4b6402dc70e7673d13781cc57c903c2f https://www.encodeproject.org/files/ENCFF127GNO/@@download/ENCFF127GNO.bigBed mm10 released low read length, control low read depth, low read depth ENCFF210FXH bigBed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF976ELA 1572758 ENCODE Processing Pipeline 08b16f9c4417f543255193157dbcb404 https://www.encodeproject.org/files/ENCFF210FXH/@@download/ENCFF210FXH.bigBed mm10 released low read length, control low read depth, low read depth ENCFF180HCX bigBed narrowPeak peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF029GZK 1667392 ENCODE Processing Pipeline b6250ae0ae135acc4c5d511ce8c68aa5 https://www.encodeproject.org/files/ENCFF180HCX/@@download/ENCFF180HCX.bigBed mm10 released low read length, control low read depth, low read depth ENCFF238DTJ bigWig signal p-value ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF191MHA, ENCFF292SSW, ENCFF482UTL 357492105 ENCODE Processing Pipeline 2b33587add1dc03e8710c38806a9a185 https://www.encodeproject.org/files/ENCFF238DTJ/@@download/ENCFF238DTJ.bigWig mm10 released low read length, control low read depth, low read depth ENCFF195FWE bigWig signal p-value ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF482UTL, ENCFF497XVC 312894865 ENCODE Processing Pipeline 01d5a56c9b0c1dab6749ccd3557f4169 https://www.encodeproject.org/files/ENCFF195FWE/@@download/ENCFF195FWE.bigWig mm10 released low read length, control low read depth, low read depth ENCFF026DWP bigWig signal p-value ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF191MHA, ENCFF292SSW, ENCFF482UTL, ENCFF497XVC 619211505 ENCODE Processing Pipeline 2ca9388ee8c92dbd5b338a23ee756fad https://www.encodeproject.org/files/ENCFF026DWP/@@download/ENCFF026DWP.bigWig mm10 released low read length, control low read depth, low read depth ENCFF020JYZ bigWig fold change over control ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF191MHA, ENCFF292SSW, ENCFF482UTL 394930022 ENCODE Processing Pipeline 65ef9bcfeea7a6e72c2c3e0c5cef9f9e https://www.encodeproject.org/files/ENCFF020JYZ/@@download/ENCFF020JYZ.bigWig mm10 released low read length, control low read depth, low read depth ENCFF631ESK bigWig fold change over control ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF482UTL, ENCFF497XVC 325248372 ENCODE Processing Pipeline d829d5fc316258b776c9eae1a0eb97a5 https://www.encodeproject.org/files/ENCFF631ESK/@@download/ENCFF631ESK.bigWig mm10 released low read length, control low read depth, low read depth ENCFF703KOJ bigWig fold change over control ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF191MHA, ENCFF292SSW, ENCFF482UTL, ENCFF497XVC 637369814 ENCODE Processing Pipeline c4dd182e2e73bbcf5b6e2686387071e8 https://www.encodeproject.org/files/ENCFF703KOJ/@@download/ENCFF703KOJ.bigWig mm10 released low read length, control low read depth, low read depth ENCFF268PNY bed narrowPeak replicated peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF029GZK, ENCFF041VAL, ENCFF976ELA 539683 ENCODE Processing Pipeline ffebd95d9ab4da2897e91c25a02e6077 https://www.encodeproject.org/files/ENCFF268PNY/@@download/ENCFF268PNY.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF004HND bigBed narrowPeak replicated peaks ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF268PNY 1469451 ENCODE Processing Pipeline 3a5724c01cc5793af56aede074630499 https://www.encodeproject.org/files/ENCFF004HND/@@download/ENCFF004HND.bigBed mm10 released low read length, control low read depth, low read depth ENCFF002AKG fastq reads ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1293667316 Bing Ren, UCSD 2cdd2cedf8ccefdcb62cabea081d19b8 SRA:SRR3652281 https://www.encodeproject.org/files/ENCFF002AKG/@@download/ENCFF002AKG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARH/ released mixed read lengths, low read length, antibody characterized with exemption, inconsistent control read length, low read depth insufficient read depth ENCFF002AKJ fastq reads ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2728674208 Bing Ren, UCSD 589ddb42d8c43d73a28e9eb4f7fa6f1e SRA:SRR3652282 https://www.encodeproject.org/files/ENCFF002AKJ/@@download/ENCFF002AKJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARC/ released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF741FHI bam alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AKG, ENCFF806TVZ 994325407 ENCODE Processing Pipeline b86a3f1a8f91c44fc69a1e4a17f734f7 https://www.encodeproject.org/files/ENCFF741FHI/@@download/ENCFF741FHI.bam mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF969ANK bam alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AKJ, ENCFF806TVZ 2200985104 ENCODE Processing Pipeline bd8e1fdb5fe6af9064ac7a86831d4851 https://www.encodeproject.org/files/ENCFF969ANK/@@download/ENCFF969ANK.bam mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF330BCO bigBed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF009OMA 2110813 ENCODE Processing Pipeline 644a81a108690b864928a3f4f8cd560d https://www.encodeproject.org/files/ENCFF330BCO/@@download/ENCFF330BCO.bigBed mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF754UXV bed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF969ANK, ENCFF989KGL 2303650 ENCODE Processing Pipeline 0edf89bf21e1b75b8aa372eb4a00efbf https://www.encodeproject.org/files/ENCFF754UXV/@@download/ENCFF754UXV.bed.gz mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF233ZJU bed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF741FHI, ENCFF969ANK, ENCFF989KGL 1595244 ENCODE Processing Pipeline 7a7fea966844a41250e84066e57d4b39 https://www.encodeproject.org/files/ENCFF233ZJU/@@download/ENCFF233ZJU.bed.gz mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF009OMA bed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF741FHI, ENCFF989KGL 1090231 ENCODE Processing Pipeline 4fda51422a1b4b55ddfc87a7522b27f8 https://www.encodeproject.org/files/ENCFF009OMA/@@download/ENCFF009OMA.bed.gz mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF100WHC bigBed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF754UXV 4838961 ENCODE Processing Pipeline 018334fabf2c26759d54aafb69ca957e https://www.encodeproject.org/files/ENCFF100WHC/@@download/ENCFF100WHC.bigBed mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF975RAP bigBed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF233ZJU 3499497 ENCODE Processing Pipeline 475f03f189738be3f6f596ff7c9f360a https://www.encodeproject.org/files/ENCFF975RAP/@@download/ENCFF975RAP.bigBed mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF590JMM bigWig signal p-value ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF969ANK, ENCFF989KGL 727674190 ENCODE Processing Pipeline 56c48275450300dbf66f2a70c8d6da5f https://www.encodeproject.org/files/ENCFF590JMM/@@download/ENCFF590JMM.bigWig mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF258GDC bigWig signal p-value ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF741FHI, ENCFF989KGL 448915774 ENCODE Processing Pipeline e1c37dea345df7a4b470f3c7a69b19fb https://www.encodeproject.org/files/ENCFF258GDC/@@download/ENCFF258GDC.bigWig mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF673CMW bigWig signal p-value ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF741FHI, ENCFF969ANK, ENCFF989KGL 912226181 ENCODE Processing Pipeline f14f5966ef1c04d0c5e17cda54569903 https://www.encodeproject.org/files/ENCFF673CMW/@@download/ENCFF673CMW.bigWig mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF570KVB bigWig fold change over control ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF969ANK, ENCFF989KGL 762261347 ENCODE Processing Pipeline 2c31014f9c1959e8a8a80a901a734e7d https://www.encodeproject.org/files/ENCFF570KVB/@@download/ENCFF570KVB.bigWig mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF373PHU bigWig fold change over control ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF741FHI, ENCFF989KGL 492048011 ENCODE Processing Pipeline ae2045a0b63b9c52d5d2403e1e5365de https://www.encodeproject.org/files/ENCFF373PHU/@@download/ENCFF373PHU.bigWig mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF774AYD bigWig fold change over control ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF741FHI, ENCFF969ANK, ENCFF989KGL 1008025300 ENCODE Processing Pipeline e0b153d4ff06b824e792de048a43d0f8 https://www.encodeproject.org/files/ENCFF774AYD/@@download/ENCFF774AYD.bigWig mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF808JLD bed narrowPeak replicated peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF009OMA, ENCFF233ZJU, ENCFF754UXV 975531 ENCODE Processing Pipeline 8fd6548ec13cc33b3680e69e835f8a48 https://www.encodeproject.org/files/ENCFF808JLD/@@download/ENCFF808JLD.bed.gz mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF742TMD bigBed narrowPeak replicated peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF808JLD 2043557 ENCODE Processing Pipeline 59ae7fe209e309c92d8dfc2e6a5ea14c https://www.encodeproject.org/files/ENCFF742TMD/@@download/ENCFF742TMD.bigBed mm10-minimal archived mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF683HZS bam unfiltered alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKG, ENCFF018NEO 1426366162 ENCODE Processing Pipeline 664d94dc611804ed214d56056c6dc562 https://www.encodeproject.org/files/ENCFF683HZS/@@download/ENCFF683HZS.bam mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF290PPJ bam alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKG, ENCFF018NEO 994027535 ENCODE Processing Pipeline b0a48cae04a5a9f73569da1bc712030d https://www.encodeproject.org/files/ENCFF290PPJ/@@download/ENCFF290PPJ.bam mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF577JWL bam unfiltered alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKJ, ENCFF018NEO 2413629925 ENCODE Processing Pipeline 31e37af658d1d992289dab83f477d2cd https://www.encodeproject.org/files/ENCFF577JWL/@@download/ENCFF577JWL.bam mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF570RBM bam alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKJ, ENCFF018NEO 1708880920 ENCODE Processing Pipeline a070af399702586b6d77973001050412 https://www.encodeproject.org/files/ENCFF570RBM/@@download/ENCFF570RBM.bam mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF753BZG bigBed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF383GYO 4809950 ENCODE Processing Pipeline 36644dd53b92361e2e4caaa7b7e9d1d8 https://www.encodeproject.org/files/ENCFF753BZG/@@download/ENCFF753BZG.bigBed mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF133EYM bed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290PPJ, ENCFF570RBM, ENCFF782YCY, ENCFF922FWV 1637061 ENCODE Processing Pipeline 80375b286fd66acabb582e426c6188d5 https://www.encodeproject.org/files/ENCFF133EYM/@@download/ENCFF133EYM.bed.gz mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF383GYO bed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF570RBM, ENCFF782YCY, ENCFF922FWV 2287910 ENCODE Processing Pipeline 773d3f3ebd782195bcb8599b72826e71 https://www.encodeproject.org/files/ENCFF383GYO/@@download/ENCFF383GYO.bed.gz mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF211NNW bed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF290PPJ, ENCFF782YCY, ENCFF922FWV 1064283 ENCODE Processing Pipeline 1b106ade2ea604545f1f5d225beed1f0 https://www.encodeproject.org/files/ENCFF211NNW/@@download/ENCFF211NNW.bed.gz mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF379ZPY bigWig signal p-value ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF570RBM, ENCFF782YCY, ENCFF922FWV 520252178 ENCODE Processing Pipeline ad03f7468e0190091e2a9895a6e33a1e https://www.encodeproject.org/files/ENCFF379ZPY/@@download/ENCFF379ZPY.bigWig mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF433JJH bigBed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF211NNW 2097077 ENCODE Processing Pipeline d1fc9b0eb9e0a29b69a5687b4d75a620 https://www.encodeproject.org/files/ENCFF433JJH/@@download/ENCFF433JJH.bigBed mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF877EPP bigBed narrowPeak peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133EYM 3618827 ENCODE Processing Pipeline 0b7e876ba02667ef658df216d5859ccb https://www.encodeproject.org/files/ENCFF877EPP/@@download/ENCFF877EPP.bigBed mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF764AAM bigWig signal p-value ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF290PPJ, ENCFF782YCY, ENCFF922FWV 616926527 ENCODE Processing Pipeline 20e475b4a2d0d24e0543e9e391930169 https://www.encodeproject.org/files/ENCFF764AAM/@@download/ENCFF764AAM.bigWig mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF052ZAO bigWig fold change over control ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF570RBM, ENCFF782YCY, ENCFF922FWV 694132114 ENCODE Processing Pipeline 9ac3c0ea07b71851c9ab9bf9c996a16a https://www.encodeproject.org/files/ENCFF052ZAO/@@download/ENCFF052ZAO.bigWig mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF629AUU bigWig signal p-value ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290PPJ, ENCFF570RBM, ENCFF782YCY, ENCFF922FWV 890367830 ENCODE Processing Pipeline e7b01a693a6fc082a92bc97577994842 https://www.encodeproject.org/files/ENCFF629AUU/@@download/ENCFF629AUU.bigWig mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF833WVX bigWig fold change over control ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF290PPJ, ENCFF782YCY, ENCFF922FWV 537728396 ENCODE Processing Pipeline 1966a0857810024886e85b5b0bf8065b https://www.encodeproject.org/files/ENCFF833WVX/@@download/ENCFF833WVX.bigWig mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF970OZN bigWig fold change over control ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF290PPJ, ENCFF570RBM, ENCFF782YCY, ENCFF922FWV 1005871723 ENCODE Processing Pipeline c67ef2ccf0a6d8337b93d60dc54ada26 https://www.encodeproject.org/files/ENCFF970OZN/@@download/ENCFF970OZN.bigWig mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF554YGR bed narrowPeak replicated peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133EYM, ENCFF211NNW, ENCFF383GYO 938872 ENCODE Processing Pipeline a45676b7df61e2aa113530df05735726 https://www.encodeproject.org/files/ENCFF554YGR/@@download/ENCFF554YGR.bed.gz mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF646BDF bigBed narrowPeak replicated peaks ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF554YGR 1971703 ENCODE Processing Pipeline 330960b2d81ba037667e25bc4ac3404d https://www.encodeproject.org/files/ENCFF646BDF/@@download/ENCFF646BDF.bigBed mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF001MMG bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MMN 1808685495 Ross Hardison, PennState d710b0fecfee7bc8d6d1c60a7f4a4a9f https://www.encodeproject.org/files/ENCFF001MMG/@@download/ENCFF001MMG.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMI bigBed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEN 272656 Ross Hardison, PennState b9c67b5459a7fc600ef6ca4ff80ba393 https://www.encodeproject.org/files/ENCFF001MMI/@@download/ENCFF001MMI.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMJ bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MMR 4887617336 Ross Hardison, PennState b8d44593ae622ef4af732b5cd2787337 https://www.encodeproject.org/files/ENCFF001MMJ/@@download/ENCFF001MMJ.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMK bigBed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEO 290521 Ross Hardison, PennState 1f8ff5486c935b781058562efb3678f7 https://www.encodeproject.org/files/ENCFF001MMK/@@download/ENCFF001MMK.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MML bigBed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEP 249555 Ross Hardison, PennState 3e38807b6425271510e84aa73efeba7b https://www.encodeproject.org/files/ENCFF001MML/@@download/ENCFF001MML.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMM bigWig signal ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 4344138400 Ross Hardison, PennState 184745560224cae5ab20ba67fdbad87a https://www.encodeproject.org/files/ENCFF001MMM/@@download/ENCFF001MMM.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MMN fastq reads ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1454017901 Ross Hardison, PennState aea61365ec4d36dfc069a18a8c6835f1 https://www.encodeproject.org/files/ENCFF001MMN/@@download/ENCFF001MMN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MMU/ released low read length, inconsistent platforms, mixed read lengths ENCFF001MMO bigWig signal ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 5255183628 Ross Hardison, PennState e14035e0b530fc62ac9701a83dc4a0c5 https://www.encodeproject.org/files/ENCFF001MMO/@@download/ENCFF001MMO.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MMP bigWig signal ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 6037889005 Ross Hardison, PennState 560b8bbdd19ccf638b2d3583f61d6b59 https://www.encodeproject.org/files/ENCFF001MMP/@@download/ENCFF001MMP.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MMR fastq reads ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 4259122986 Ross Hardison, PennState aa0c4fea1e9363807eb250de135bf26d https://www.encodeproject.org/files/ENCFF001MMR/@@download/ENCFF001MMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001YEN bed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 128708 Ross Hardison, PennState 0e0f66a5ba556556f17446eba4e511c0 https://www.encodeproject.org/files/ENCFF001YEN/@@download/ENCFF001YEN.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YEO bed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 136290 Ross Hardison, PennState 6b01ed2a628768d5e8a031949b0e00e0 https://www.encodeproject.org/files/ENCFF001YEO/@@download/ENCFF001YEO.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YEP bed broadPeak peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 102077 Ross Hardison, PennState d03450ff31046c39cd5214e6df6eaa71 https://www.encodeproject.org/files/ENCFF001YEP/@@download/ENCFF001YEP.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF689CPK bigWig signal p-value ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF311BIT, ENCFF887UBK 363112012 ENCODE Processing Pipeline 28de97ce0a1696812538816daac79b5f https://www.encodeproject.org/files/ENCFF689CPK/@@download/ENCFF689CPK.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF606CFC bigWig fold change over control ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF311BIT, ENCFF887UBK 465146954 ENCODE Processing Pipeline 589d36b54164db52dbf4c72006f12aed https://www.encodeproject.org/files/ENCFF606CFC/@@download/ENCFF606CFC.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF450NAD bigBed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF540LXX 11234209 ENCODE Processing Pipeline 45ea03dbc476c6b47168891c1679bb29 https://www.encodeproject.org/files/ENCFF450NAD/@@download/ENCFF450NAD.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF112ATZ bam unfiltered alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MMN, ENCFF018NEO 1905495681 ENCODE Processing Pipeline af22924234a57726e86987e910ae072e https://www.encodeproject.org/files/ENCFF112ATZ/@@download/ENCFF112ATZ.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF590MSF bam unfiltered alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MMR, ENCFF018NEO 4283060085 ENCODE Processing Pipeline 21f1081e74da5ea26717df779a6e093b https://www.encodeproject.org/files/ENCFF590MSF/@@download/ENCFF590MSF.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF311BIT bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MMN, ENCFF018NEO 1315058962 ENCODE Processing Pipeline 4e1dba33685dae1acbfb4570cca127c1 https://www.encodeproject.org/files/ENCFF311BIT/@@download/ENCFF311BIT.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF377TAN bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MMR, ENCFF018NEO 2922459392 ENCODE Processing Pipeline eef8f458818f28713f7d4524b25e1751 https://www.encodeproject.org/files/ENCFF377TAN/@@download/ENCFF377TAN.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF089RDH bigWig signal p-value ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 908602261 ENCODE Processing Pipeline f8a2bce8d741354c8387ccb0e314ebc8 https://www.encodeproject.org/files/ENCFF089RDH/@@download/ENCFF089RDH.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF733FPO bigWig signal p-value ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF311BIT, ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 908317393 ENCODE Processing Pipeline f3d4dc1287ce12dd641c40680199b379 https://www.encodeproject.org/files/ENCFF733FPO/@@download/ENCFF733FPO.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF418WKA bigWig fold change over control ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 1054661335 ENCODE Processing Pipeline 4cd128823f8d5f111728c8bed3b40ea3 https://www.encodeproject.org/files/ENCFF418WKA/@@download/ENCFF418WKA.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF779AOL bigWig fold change over control ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF311BIT, ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 1344761714 ENCODE Processing Pipeline 29b6a2dbcac3575c6a22233ba74c3b5d https://www.encodeproject.org/files/ENCFF779AOL/@@download/ENCFF779AOL.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF540LXX bed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF311BIT, ENCFF887UBK 5033172 ENCODE Processing Pipeline d76223b2779eee9be7e0dfa053b424e7 https://www.encodeproject.org/files/ENCFF540LXX/@@download/ENCFF540LXX.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF188TYP bed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 6173332 ENCODE Processing Pipeline fa65a8a406253a84fcc07ec06edea8ed https://www.encodeproject.org/files/ENCFF188TYP/@@download/ENCFF188TYP.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF407FNA bigBed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF337HVO 11212641 ENCODE Processing Pipeline 25606095c04e1f64b8cef8ef7c2b40cf https://www.encodeproject.org/files/ENCFF407FNA/@@download/ENCFF407FNA.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF337HVO bed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF311BIT, ENCFF377TAN, ENCFF381DCK, ENCFF887UBK 6736188 ENCODE Processing Pipeline 40e1e899f7eff54f1bf4fcb6243f2730 https://www.encodeproject.org/files/ENCFF337HVO/@@download/ENCFF337HVO.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF162EBI bed narrowPeak optimal idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF188TYP, ENCFF337HVO, ENCFF540LXX, ENCFF547MET 138232 ENCODE Processing Pipeline b87d70d97d4c620ea0c896ebc17a62a0 https://www.encodeproject.org/files/ENCFF162EBI/@@download/ENCFF162EBI.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF585PTU bigBed narrowPeak peaks and background as input for IDR ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF188TYP 11329863 ENCODE Processing Pipeline d4e22d161717b1505c94e85679cc1a5c https://www.encodeproject.org/files/ENCFF585PTU/@@download/ENCFF585PTU.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF021JFS bed narrowPeak conservative idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF188TYP, ENCFF337HVO, ENCFF540LXX, ENCFF547MET 125123 ENCODE Processing Pipeline 87454570c7ee2ce496cec27ac19c6c86 https://www.encodeproject.org/files/ENCFF021JFS/@@download/ENCFF021JFS.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF791XHJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF021JFS 282740 ENCODE Processing Pipeline 963b94cca1e4a50dabcf6ce51d630fbe https://www.encodeproject.org/files/ENCFF791XHJ/@@download/ENCFF791XHJ.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF932URR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF162EBI 302123 ENCODE Processing Pipeline f58067c8fe47f1ed09a41596ef44afd7 https://www.encodeproject.org/files/ENCFF932URR/@@download/ENCFF932URR.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF708TCP fastq reads ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1095742709 Bing Ren, UCSD 2b856a06e393d3765048665a1c2c3ada SRA:SRR4235755 https://www.encodeproject.org/files/ENCFF708TCP/@@download/ENCFF708TCP.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released moderate library complexity, mild to moderate bottlenecking ENCFF907BFC fastq reads ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1225434860 Bing Ren, UCSD 123dbdf288dca758f0b13e4f0f62b9f9 SRA:SRR4235754 https://www.encodeproject.org/files/ENCFF907BFC/@@download/ENCFF907BFC.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released moderate library complexity, mild to moderate bottlenecking ENCFF078WCY bam alignments ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF708TCP 947356887 ENCODE Processing Pipeline a655df9922cae6c1f582728163cb7613 https://www.encodeproject.org/files/ENCFF078WCY/@@download/ENCFF078WCY.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF766EAE bam alignments ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF907BFC 1040337383 ENCODE Processing Pipeline b40d73b4085fc0533f8770a56be86620 https://www.encodeproject.org/files/ENCFF766EAE/@@download/ENCFF766EAE.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF849SDS bam unfiltered alignments ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF708TCP 1383029049 ENCODE Processing Pipeline ee31d8caf8b6fe6454bf2fe1907191c0 https://www.encodeproject.org/files/ENCFF849SDS/@@download/ENCFF849SDS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF508NJC bam unfiltered alignments ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF907BFC 1582685656 ENCODE Processing Pipeline d12e7f0f4a9e55c26b9f538189c50c02 https://www.encodeproject.org/files/ENCFF508NJC/@@download/ENCFF508NJC.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF112CSH bigBed narrowPeak peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF577SKO 2471651 ENCODE Processing Pipeline ae9ac68b3dbcb662d9472e79cd610d04 https://www.encodeproject.org/files/ENCFF112CSH/@@download/ENCFF112CSH.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF932WFN bigBed narrowPeak peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF930CBM 2959302 ENCODE Processing Pipeline ca442f6a4e2bbfcd57130c2e86eebac9 https://www.encodeproject.org/files/ENCFF932WFN/@@download/ENCFF932WFN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF789GKR bigBed narrowPeak peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF825RRP 2639527 ENCODE Processing Pipeline 4489569d078f73698c4312b959145b79 https://www.encodeproject.org/files/ENCFF789GKR/@@download/ENCFF789GKR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF577SKO bed narrowPeak peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF766EAE 786304 ENCODE Processing Pipeline 55ddc8e20cd050d12c26228bbfc88986 https://www.encodeproject.org/files/ENCFF577SKO/@@download/ENCFF577SKO.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF825RRP bed narrowPeak peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF078WCY, ENCFF887RXR 843062 ENCODE Processing Pipeline f50c2be5c1bb1df784654bfbf8f4d2fa https://www.encodeproject.org/files/ENCFF825RRP/@@download/ENCFF825RRP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF930CBM bed narrowPeak peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF078WCY, ENCFF128QRQ, ENCFF766EAE, ENCFF887RXR 991987 ENCODE Processing Pipeline 58dd3969fa2e0eb47b2fc6cf2410e567 https://www.encodeproject.org/files/ENCFF930CBM/@@download/ENCFF930CBM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF311OAO bigWig signal p-value ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF078WCY, ENCFF887RXR 508547396 ENCODE Processing Pipeline ae1c5569f2cb23ecc3104751066ac3b9 https://www.encodeproject.org/files/ENCFF311OAO/@@download/ENCFF311OAO.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF692QAV bigWig signal p-value ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF766EAE 552067447 ENCODE Processing Pipeline 78f9a59db4148444a793bfc2b00cca49 https://www.encodeproject.org/files/ENCFF692QAV/@@download/ENCFF692QAV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF404RBD bigWig fold change over control ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF766EAE 555909471 ENCODE Processing Pipeline ae2af0152905a49333ab31d944cdb16f https://www.encodeproject.org/files/ENCFF404RBD/@@download/ENCFF404RBD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF234BND bigWig signal p-value ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF078WCY, ENCFF128QRQ, ENCFF766EAE, ENCFF887RXR 864220371 ENCODE Processing Pipeline 71700a8eba3b3ab6fe76598e0eab92bc https://www.encodeproject.org/files/ENCFF234BND/@@download/ENCFF234BND.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF807DJR bigWig fold change over control ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF078WCY, ENCFF887RXR 460754792 ENCODE Processing Pipeline 22cce2962542fbe3eadda6858a7472b9 https://www.encodeproject.org/files/ENCFF807DJR/@@download/ENCFF807DJR.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF889KFS bigWig fold change over control ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF078WCY, ENCFF128QRQ, ENCFF766EAE, ENCFF887RXR 992206664 ENCODE Processing Pipeline 22ca26e2ac2efaab92633266b02cb600 https://www.encodeproject.org/files/ENCFF889KFS/@@download/ENCFF889KFS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF870CJG bigBed narrowPeak replicated peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF076DLF 2127094 ENCODE Processing Pipeline 2411d155975b3d484e505488073ba5d7 https://www.encodeproject.org/files/ENCFF870CJG/@@download/ENCFF870CJG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF076DLF bed narrowPeak replicated peaks ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF577SKO, ENCFF825RRP, ENCFF930CBM 926122 ENCODE Processing Pipeline 352fcb46f5a4ce978c383728e3db9d8c https://www.encodeproject.org/files/ENCFF076DLF/@@download/ENCFF076DLF.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF001MRA bam alignments ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRI 680790180 Ross Hardison, PennState 819f25c46224a35866b419d0148b5fcc https://www.encodeproject.org/files/ENCFF001MRA/@@download/ENCFF001MRA.bam mm9 released low read length insufficient read depth ENCFF001MRB bigWig signal ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 1240960188 Ross Hardison, PennState 3be97192b78c41e9c2f8f16cdee576c7 https://www.encodeproject.org/files/ENCFF001MRB/@@download/ENCFF001MRB.bigWig mm9 released low read length missing derived_from insufficient read depth ENCFF001MRI fastq reads ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 48 single-ended 549740339 Ross Hardison, PennState a55d36047c4db314b4e01455a54aa8b5 https://www.encodeproject.org/files/ENCFF001MRI/@@download/ENCFF001MRI.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth ENCFF786JZS bam unfiltered alignments ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRI, ENCFF806TVZ 718273505 J. Michael Cherry, Stanford 61660c99f8b122b06f4b653bb498a5bc https://www.encodeproject.org/files/ENCFF786JZS/@@download/ENCFF786JZS.bam mm10-minimal archived low read length insufficient read depth ENCFF730TVA bam alignments ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRI, ENCFF806TVZ 526625585 J. Michael Cherry, Stanford 5e74f6a3efe4fab44ac5c02ff921eefb https://www.encodeproject.org/files/ENCFF730TVA/@@download/ENCFF730TVA.bam mm10-minimal archived low read length insufficient read depth ENCFF421WGK bam unfiltered alignments ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRI, ENCFF018NEO 658087439 ENCODE Processing Pipeline eee81906db63d1c020c57b75d9c84874 https://www.encodeproject.org/files/ENCFF421WGK/@@download/ENCFF421WGK.bam mm10 released low read length insufficient read depth ENCFF043ZAY bam alignments ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRI, ENCFF018NEO 480726577 ENCODE Processing Pipeline 0b40fbd786ecd3a731fd23b2714e7240 https://www.encodeproject.org/files/ENCFF043ZAY/@@download/ENCFF043ZAY.bam mm10 released low read length insufficient read depth ENCFF760ZYG fastq reads ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2723241259 Bing Ren, UCSD e0fefcfdae2631c29c56e8526c0711d9 SRA:SRR4235616 https://www.encodeproject.org/files/ENCFF760ZYG/@@download/ENCFF760ZYG.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF542QDJ fastq reads ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 2 50 single-ended 2620804833 Bing Ren, UCSD aa98f1116c791b00e410211d8b300c4b SRA:SRR4235613 https://www.encodeproject.org/files/ENCFF542QDJ/@@download/ENCFF542QDJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF667CSK fastq reads ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2049018598 Bing Ren, UCSD 49b696fad6549417e3ffee90a1ae22c9 SRA:SRR4235614 https://www.encodeproject.org/files/ENCFF667CSK/@@download/ENCFF667CSK.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF762BIJ fastq reads ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 3 50 single-ended 525293385 Bing Ren, UCSD ccf1a7a6d228b02bdbc877591225d3b4 SRA:SRR4235615 https://www.encodeproject.org/files/ENCFF762BIJ/@@download/ENCFF762BIJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF321AFZ fastq reads ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 698605685 Bing Ren, UCSD bc81f406f555d6490a6c6f66208d51b9 SRA:SRR4235617 https://www.encodeproject.org/files/ENCFF321AFZ/@@download/ENCFF321AFZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF223KED bam unfiltered alignments ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF321AFZ, ENCFF760ZYG 3774353895 ENCODE Processing Pipeline 3cd77ee71ae39e39ddfcf3d006d44059 https://www.encodeproject.org/files/ENCFF223KED/@@download/ENCFF223KED.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF156KVI bam alignments ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF321AFZ, ENCFF760ZYG 1248787403 ENCODE Processing Pipeline 0936666da0b54392c2cb84e6145dcdad https://www.encodeproject.org/files/ENCFF156KVI/@@download/ENCFF156KVI.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF711PMC bam unfiltered alignments ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF542QDJ, ENCFF667CSK, ENCFF762BIJ 5805862024 ENCODE Processing Pipeline 15cc8e8cde362967693315dfaefa97ed https://www.encodeproject.org/files/ENCFF711PMC/@@download/ENCFF711PMC.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF831KQT bam alignments ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF542QDJ, ENCFF667CSK, ENCFF762BIJ 1969885902 ENCODE Processing Pipeline 0c6d4c2533d1e99af6ac8f6ec592ed0b https://www.encodeproject.org/files/ENCFF831KQT/@@download/ENCFF831KQT.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF242TFV bed narrowPeak peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF156KVI, ENCFF831KQT, ENCFF887RXR 3127314 ENCODE Processing Pipeline 8102b9cca71236f42a1525011ccd163f https://www.encodeproject.org/files/ENCFF242TFV/@@download/ENCFF242TFV.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF390CQF bigBed narrowPeak peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF633HAV 6854966 ENCODE Processing Pipeline c1291c5b8140014ca18797051218d785 https://www.encodeproject.org/files/ENCFF390CQF/@@download/ENCFF390CQF.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF956XZH bed narrowPeak peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF831KQT, ENCFF887RXR 2349932 ENCODE Processing Pipeline 47037b531fc362984639d8d750c91c24 https://www.encodeproject.org/files/ENCFF956XZH/@@download/ENCFF956XZH.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF633HAV bed narrowPeak peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF156KVI 3225959 ENCODE Processing Pipeline cb0b90f39c1e9e96745268d19d6e7007 https://www.encodeproject.org/files/ENCFF633HAV/@@download/ENCFF633HAV.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF322ILT bigBed narrowPeak peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF956XZH 5735197 ENCODE Processing Pipeline d071ee1c712931bdcc76fa07de560f32 https://www.encodeproject.org/files/ENCFF322ILT/@@download/ENCFF322ILT.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF523VPT bigBed narrowPeak peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF242TFV 7532315 ENCODE Processing Pipeline 5a8dbde08d4fd8fa47223b48064314b0 https://www.encodeproject.org/files/ENCFF523VPT/@@download/ENCFF523VPT.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF632ZOH bigWig signal p-value ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF831KQT, ENCFF887RXR 777790928 ENCODE Processing Pipeline 15962e8dbcb51029b780f971fc636a9f https://www.encodeproject.org/files/ENCFF632ZOH/@@download/ENCFF632ZOH.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF236GNI bigWig signal p-value ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF156KVI 647918733 ENCODE Processing Pipeline 9dcbec43b59173de041fd130a5d4c2cf https://www.encodeproject.org/files/ENCFF236GNI/@@download/ENCFF236GNI.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF827YAZ bigWig signal p-value ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF156KVI, ENCFF831KQT, ENCFF887RXR 1366118453 ENCODE Processing Pipeline e3774088304cd3df32959ab3b7cca95e https://www.encodeproject.org/files/ENCFF827YAZ/@@download/ENCFF827YAZ.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF489RNA bigWig fold change over control ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF156KVI 565494334 ENCODE Processing Pipeline c789a90d0b5a5ac94bf358ff8faa0399 https://www.encodeproject.org/files/ENCFF489RNA/@@download/ENCFF489RNA.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF521VZZ bigWig fold change over control ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF831KQT, ENCFF887RXR 892208714 ENCODE Processing Pipeline bd02f1247a7a2af52d4c0043b7c695e5 https://www.encodeproject.org/files/ENCFF521VZZ/@@download/ENCFF521VZZ.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF046VWN bigWig fold change over control ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF156KVI, ENCFF831KQT, ENCFF887RXR 1387633265 ENCODE Processing Pipeline dc25b239c7903ff68077a09dd9246839 https://www.encodeproject.org/files/ENCFF046VWN/@@download/ENCFF046VWN.bigWig mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF671NPI bed narrowPeak replicated peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF242TFV, ENCFF633HAV, ENCFF956XZH 1559550 ENCODE Processing Pipeline 6c4a421cf8cc3060609c20630caeba24 https://www.encodeproject.org/files/ENCFF671NPI/@@download/ENCFF671NPI.bed.gz mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF248BNK bigBed narrowPeak replicated peaks ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF671NPI 3077452 ENCODE Processing Pipeline 882fd0faaa1b7047c886d167bf6ace35 https://www.encodeproject.org/files/ENCFF248BNK/@@download/ENCFF248BNK.bigBed mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF001JWL bam alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JWW 1200678506 Bing Ren, UCSD 881c1a611be107587ad1d4ab305a06e6 https://www.encodeproject.org/files/ENCFF001JWL/@@download/ENCFF001JWL.bam mm9 released low read length, low read depth insufficient read depth for broad peaks control ENCFF001JWM bam alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JWV 699056556 Bing Ren, UCSD efceb831e848d3bac7dec3de668151ef https://www.encodeproject.org/files/ENCFF001JWM/@@download/ENCFF001JWM.bam mm9 released low read length, low read depth insufficient read depth for broad peaks control ENCFF001JWO bigWig signal ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001JWL, ENCFF001JWM 87030211 Bing Ren, UCSD 6d8cf8a6485bf7e4a36bb823148947ea https://www.encodeproject.org/files/ENCFF001JWO/@@download/ENCFF001JWO.bigWig mm9 released low read length, low read depth insufficient read depth for broad peaks control ENCFF001JWV fastq reads ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 660144579 Bing Ren, UCSD a0601f7b651ebcbebb7c4f9c24fb3d76 https://www.encodeproject.org/files/ENCFF001JWV/@@download/ENCFF001JWV.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF001JWW fastq reads ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 1128654318 Bing Ren, UCSD 26518d4d7d3775f0e2b8e99b4ccad73c https://www.encodeproject.org/files/ENCFF001JWW/@@download/ENCFF001JWW.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth for broad peaks control ENCFF037JRB bam unfiltered alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JWW, ENCFF806TVZ 1306627331 J. Michael Cherry, Stanford 4dd6760bac2a2170472aec3d3195f173 https://www.encodeproject.org/files/ENCFF037JRB/@@download/ENCFF037JRB.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF926DMF bam unfiltered alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JWV, ENCFF806TVZ 781698321 J. Michael Cherry, Stanford 8d5799cbd80c9475572bcf72e1919d11 https://www.encodeproject.org/files/ENCFF926DMF/@@download/ENCFF926DMF.bam mm10-minimal archived low read length, low read depth insufficient read depth for broad peaks control ENCFF310NCX bam alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWV, ENCFF018NEO 544494341 ENCODE Processing Pipeline d341cdb8cb7474e93b0491d7c8045cda https://www.encodeproject.org/files/ENCFF310NCX/@@download/ENCFF310NCX.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF758PYU bam alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWW, ENCFF018NEO 859035832 ENCODE Processing Pipeline 5caf102fdcc5d4b84fda85d1ed66ecf1 https://www.encodeproject.org/files/ENCFF758PYU/@@download/ENCFF758PYU.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF505OSR bam unfiltered alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWV, ENCFF018NEO 782626555 ENCODE Processing Pipeline 02b5930361971c83c476c514e01c9cf1 https://www.encodeproject.org/files/ENCFF505OSR/@@download/ENCFF505OSR.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF576MKA bam unfiltered alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWW, ENCFF018NEO 1307668834 ENCODE Processing Pipeline cbf857cf630bbbedae979d291edb3712 https://www.encodeproject.org/files/ENCFF576MKA/@@download/ENCFF576MKA.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF001MQX bam alignments ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRH 1497986733 Ross Hardison, PennState d4e26305fc56f2e44ee82dc4cc7f3c08 https://www.encodeproject.org/files/ENCFF001MQX/@@download/ENCFF001MQX.bam mm9 released low read length insufficient read depth for broad peaks control ENCFF001MQY bigWig signal ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 2158456987 Ross Hardison, PennState db1d6f6f0b4c9e74bcf9d04b4c0e1283 https://www.encodeproject.org/files/ENCFF001MQY/@@download/ENCFF001MQY.bigWig mm9 released low read length missing derived_from, insufficient read depth for broad peaks control ENCFF001MRH fastq reads ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 48 single-ended 1224171602 Ross Hardison, PennState 60982adb7cdab06e51329617e0e54f77 https://www.encodeproject.org/files/ENCFF001MRH/@@download/ENCFF001MRH.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF916GXH bam unfiltered alignments ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRH, ENCFF806TVZ 1574653610 J. Michael Cherry, Stanford b8c7edbbacfa5104ae5d9aa7ed7dbd89 https://www.encodeproject.org/files/ENCFF916GXH/@@download/ENCFF916GXH.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF736DEZ bam alignments ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRH, ENCFF806TVZ 1129406895 J. Michael Cherry, Stanford 082428d15443b99a8746bde25be73381 https://www.encodeproject.org/files/ENCFF736DEZ/@@download/ENCFF736DEZ.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF857ZNT bam unfiltered alignments ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRH, ENCFF018NEO 1441512402 ENCODE Processing Pipeline 96ac0e54625fd1eb6c7e0cd58a541de6 https://www.encodeproject.org/files/ENCFF857ZNT/@@download/ENCFF857ZNT.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF582HXG bam alignments ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRH, ENCFF018NEO 1021536128 ENCODE Processing Pipeline 0d603037c8e2e49d4bdd9f54fe911d69 https://www.encodeproject.org/files/ENCFF582HXG/@@download/ENCFF582HXG.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF746ORF fastq reads ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2453839843 Bing Ren, UCSD 7b3b218632330083ba85865bb6ca341d SRA:SRR4235810 https://www.encodeproject.org/files/ENCFF746ORF/@@download/ENCFF746ORF.fastq.gz Illumina HiSeq 4000 /files/ENCFF892KDP/ released mild to moderate bottlenecking, moderate library complexity ENCFF982POC fastq reads ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2443678283 Bing Ren, UCSD a90547aaa8a924b72e44460867f6d62f SRA:SRR4235811 https://www.encodeproject.org/files/ENCFF982POC/@@download/ENCFF982POC.fastq.gz Illumina HiSeq 4000 /files/ENCFF366TEJ/ released mild to moderate bottlenecking, moderate library complexity ENCFF151ZIR bam unfiltered alignments ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF982POC 3073046621 ENCODE Processing Pipeline 2721a2736b07526d7db163034983cb7a https://www.encodeproject.org/files/ENCFF151ZIR/@@download/ENCFF151ZIR.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF997RJL bam unfiltered alignments ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF746ORF 3063938063 ENCODE Processing Pipeline 2955d6335025bb6b3dcfc7e650c2de2f https://www.encodeproject.org/files/ENCFF997RJL/@@download/ENCFF997RJL.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF536VOA bam alignments ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF982POC 2060725114 ENCODE Processing Pipeline f7b95d06741d73b2bd094d696f4e4dff https://www.encodeproject.org/files/ENCFF536VOA/@@download/ENCFF536VOA.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF331HWN bam alignments ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF746ORF 2045868856 ENCODE Processing Pipeline 129eb54bdb151cd8dfb7ae90a5a6a1de https://www.encodeproject.org/files/ENCFF331HWN/@@download/ENCFF331HWN.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF950QFU bed narrowPeak peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF331HWN, ENCFF344GQQ 2697309 ENCODE Processing Pipeline 0c86aa495fb1ddcf4de1e09f92b8eb86 https://www.encodeproject.org/files/ENCFF950QFU/@@download/ENCFF950QFU.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF571WRK bigBed narrowPeak peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF899ZOJ 6646526 ENCODE Processing Pipeline d3de74a87289f8fee55deb37a35fc6d7 https://www.encodeproject.org/files/ENCFF571WRK/@@download/ENCFF571WRK.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF167YKE bigBed narrowPeak peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF950QFU 5596865 ENCODE Processing Pipeline 02c4b4ad835c1ce954825701e0ac8144 https://www.encodeproject.org/files/ENCFF167YKE/@@download/ENCFF167YKE.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF477RUZ bigBed narrowPeak peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF457CZR 6813927 ENCODE Processing Pipeline 72e7d3d53dcee9da0d0b91643bc4579c https://www.encodeproject.org/files/ENCFF477RUZ/@@download/ENCFF477RUZ.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF899ZOJ bed narrowPeak peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF536VOA 3162245 ENCODE Processing Pipeline ed0c80588175d23da39bdd224ed630c8 https://www.encodeproject.org/files/ENCFF899ZOJ/@@download/ENCFF899ZOJ.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF457CZR bed narrowPeak peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF181QWR, ENCFF331HWN, ENCFF344GQQ, ENCFF536VOA 3236347 ENCODE Processing Pipeline 739e902101a753a2a2703ca4e54ac19c https://www.encodeproject.org/files/ENCFF457CZR/@@download/ENCFF457CZR.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF748IUL bigWig signal p-value ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF536VOA 862299058 ENCODE Processing Pipeline 87eec5ff4d0ac19421c799cad4a99c03 https://www.encodeproject.org/files/ENCFF748IUL/@@download/ENCFF748IUL.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF389UGE bigWig signal p-value ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF331HWN, ENCFF344GQQ 792858751 ENCODE Processing Pipeline c38e7eb1b28e4117218ec66f4af2a056 https://www.encodeproject.org/files/ENCFF389UGE/@@download/ENCFF389UGE.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF336PRX bigWig signal p-value ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF181QWR, ENCFF331HWN, ENCFF344GQQ, ENCFF536VOA 1294571022 ENCODE Processing Pipeline 4a47eff4a8a87564b4648de7ac289dbd https://www.encodeproject.org/files/ENCFF336PRX/@@download/ENCFF336PRX.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF120FWS bigWig fold change over control ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF181QWR, ENCFF344GQQ, ENCFF536VOA 988112049 ENCODE Processing Pipeline 49e97e479e5830af3cd391547d8b77b4 https://www.encodeproject.org/files/ENCFF120FWS/@@download/ENCFF120FWS.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF420XSM bigWig fold change over control ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF181QWR, ENCFF331HWN, ENCFF344GQQ 975523971 ENCODE Processing Pipeline 015fa579f4919ea0f9f9502e73ffe251 https://www.encodeproject.org/files/ENCFF420XSM/@@download/ENCFF420XSM.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF996XRG bigWig fold change over control ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF181QWR, ENCFF331HWN, ENCFF344GQQ, ENCFF536VOA 1533005714 ENCODE Processing Pipeline 640fe0fe4d360c92260e675a7a610766 https://www.encodeproject.org/files/ENCFF996XRG/@@download/ENCFF996XRG.bigWig mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF376OOU bed narrowPeak replicated peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF457CZR, ENCFF899ZOJ, ENCFF950QFU 2711217 ENCODE Processing Pipeline 2a3cbead3fee61aa9d8fc528e60490b8 https://www.encodeproject.org/files/ENCFF376OOU/@@download/ENCFF376OOU.bed.gz mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF649GJT bigBed narrowPeak replicated peaks ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF376OOU 4529546 ENCODE Processing Pipeline 4ef2c3f2da6fbf3fd8ec5e4bed0d5137 https://www.encodeproject.org/files/ENCFF649GJT/@@download/ENCFF649GJT.bigBed mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF337AOQ fastq reads ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2491701920 Bing Ren, UCSD 813986703a22b3448689c40f3e9232e6 SRA:SRR4235628 https://www.encodeproject.org/files/ENCFF337AOQ/@@download/ENCFF337AOQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF827ZPT fastq reads ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2139171453 Bing Ren, UCSD 0d7f131a1b154dafe1d58c3cc5af0283 SRA:SRR4235630 https://www.encodeproject.org/files/ENCFF827ZPT/@@download/ENCFF827ZPT.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF168CSP fastq reads ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 1179413973 Bing Ren, UCSD 890d1171bcbb4614f4083f3a44768cef SRA:SRR4235631 https://www.encodeproject.org/files/ENCFF168CSP/@@download/ENCFF168CSP.fastq.gz Illumina HiSeq 4000 /files/ENCFF183PVA/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF964GOM fastq reads ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 2 50 single-ended 2013283968 Bing Ren, UCSD c2e2ddb2c237be9ccd8c9a67e53f63e6 SRA:SRR4235629 https://www.encodeproject.org/files/ENCFF964GOM/@@download/ENCFF964GOM.fastq.gz Illumina HiSeq 4000 /files/ENCFF929WDB/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF171CME bam unfiltered alignments ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF337AOQ, ENCFF964GOM 5327334189 ENCODE Processing Pipeline 937381cd9f78ba3da4b1124af4898615 https://www.encodeproject.org/files/ENCFF171CME/@@download/ENCFF171CME.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF672BNI bam unfiltered alignments ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF168CSP, ENCFF827ZPT 4079293599 ENCODE Processing Pipeline 1a2c44a9817b8ef8fddf2d906ce6b171 https://www.encodeproject.org/files/ENCFF672BNI/@@download/ENCFF672BNI.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF309FVV bam alignments ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF168CSP, ENCFF827ZPT 2079930296 ENCODE Processing Pipeline 1c77493cae0bd1fe9a8979c9c88dd9f6 https://www.encodeproject.org/files/ENCFF309FVV/@@download/ENCFF309FVV.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF794PFH bam alignments ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF337AOQ, ENCFF964GOM 2513586595 ENCODE Processing Pipeline 310a2b01c5b81e904b01787aec3062bf https://www.encodeproject.org/files/ENCFF794PFH/@@download/ENCFF794PFH.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF440ZLB bed narrowPeak peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF128QRQ, ENCFF794PFH, ENCFF887RXR 5509816 ENCODE Processing Pipeline d377a95b0df150ef56ec82cc7dd6825f https://www.encodeproject.org/files/ENCFF440ZLB/@@download/ENCFF440ZLB.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF450JIT bigBed narrowPeak peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF599ZMT 7783304 ENCODE Processing Pipeline 6d56507c0291d39cea2fbdb017b3bd08 https://www.encodeproject.org/files/ENCFF450JIT/@@download/ENCFF450JIT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF975UIM bed narrowPeak peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF309FVV 3994104 ENCODE Processing Pipeline 2dc95fcbc302a6ee54d72e4d5555e02c https://www.encodeproject.org/files/ENCFF975UIM/@@download/ENCFF975UIM.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF599ZMT bed narrowPeak peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF309FVV, ENCFF794PFH, ENCFF887RXR 3573520 ENCODE Processing Pipeline 1490a06aadc8b0120cd7eac2d77c5e0d https://www.encodeproject.org/files/ENCFF599ZMT/@@download/ENCFF599ZMT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF190MSR bigBed narrowPeak peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF975UIM 7059389 ENCODE Processing Pipeline 519fa18d62b70d53d4e675bac50632d7 https://www.encodeproject.org/files/ENCFF190MSR/@@download/ENCFF190MSR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF116LAP bigBed narrowPeak peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF440ZLB 11858342 ENCODE Processing Pipeline f4dbd66d5da43c2a932bd019c68c0077 https://www.encodeproject.org/files/ENCFF116LAP/@@download/ENCFF116LAP.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF203DUW bigWig signal p-value ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF309FVV 783655175 ENCODE Processing Pipeline d0a3913d0f05a88b7f17824d3c7a5a61 https://www.encodeproject.org/files/ENCFF203DUW/@@download/ENCFF203DUW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF695TYM bigWig signal p-value ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF128QRQ, ENCFF794PFH, ENCFF887RXR 1056120313 ENCODE Processing Pipeline a1908bafb1b083be653b3dc2efbcfa70 https://www.encodeproject.org/files/ENCFF695TYM/@@download/ENCFF695TYM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF718UGD bigWig fold change over control ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF128QRQ, ENCFF794PFH, ENCFF887RXR 1100532455 ENCODE Processing Pipeline 2aced4f31aec21747a96843b6a9c9c2c https://www.encodeproject.org/files/ENCFF718UGD/@@download/ENCFF718UGD.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF234LPQ bigWig signal p-value ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF309FVV, ENCFF794PFH, ENCFF887RXR 1203730712 ENCODE Processing Pipeline 320356c6114483dc43aa79ccd180f816 https://www.encodeproject.org/files/ENCFF234LPQ/@@download/ENCFF234LPQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF266LIK bigWig fold change over control ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF128QRQ, ENCFF309FVV 805775410 ENCODE Processing Pipeline 77ae717ceb48cda1d8236bb8b82959e4 https://www.encodeproject.org/files/ENCFF266LIK/@@download/ENCFF266LIK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF474PLN bigWig fold change over control ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF128QRQ, ENCFF309FVV, ENCFF794PFH, ENCFF887RXR 1593130849 ENCODE Processing Pipeline 9e650ff2d58b91487f334d212474d66f https://www.encodeproject.org/files/ENCFF474PLN/@@download/ENCFF474PLN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF482VKK bed narrowPeak replicated peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF440ZLB, ENCFF599ZMT, ENCFF975UIM 2801223 ENCODE Processing Pipeline a608d5b0c4beb73381e04b106cbb4194 https://www.encodeproject.org/files/ENCFF482VKK/@@download/ENCFF482VKK.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF588WKA bigBed narrowPeak replicated peaks ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF482VKK 4793119 ENCODE Processing Pipeline c3df80e1d2561e698c28837cac0122b9 https://www.encodeproject.org/files/ENCFF588WKA/@@download/ENCFF588WKA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF001ZTH fastq reads ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1017364596 Bing Ren, UCSD ca03477135b2c848d3cb2b970fc757df SRA:SRR3653349 https://www.encodeproject.org/files/ENCFF001ZTH/@@download/ENCFF001ZTH.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001ZTM fastq reads ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 858020425 Bing Ren, UCSD 43d0dbafd9855b8391341e667c6403db SRA:SRR3653347 https://www.encodeproject.org/files/ENCFF001ZTM/@@download/ENCFF001ZTM.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF063ROF fastq reads ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 826778367 Bing Ren, UCSD 1227d52740edea660171117518582567 SRA:SRR3653348 https://www.encodeproject.org/files/ENCFF063ROF/@@download/ENCFF063ROF.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUY/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF585BGE fastq reads ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 265202522 Bing Ren, UCSD e6ba591c44ec8f9b019eca562a3e4717 SRA:SRR3653350 https://www.encodeproject.org/files/ENCFF585BGE/@@download/ENCFF585BGE.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZVC/ released low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF358IFT bam alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTM, ENCFF063ROF, ENCFF806TVZ 1423079991 ENCODE Processing Pipeline 858956b1925f0ab269aae8e6521ef405 https://www.encodeproject.org/files/ENCFF358IFT/@@download/ENCFF358IFT.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF305NCJ bam alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZTH, ENCFF585BGE, ENCFF806TVZ 1120533850 ENCODE Processing Pipeline 94ce83e0f9c41ebdf87e6225558c18ec https://www.encodeproject.org/files/ENCFF305NCJ/@@download/ENCFF305NCJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF457YMP bed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF358IFT, ENCFF366UML 1776323 ENCODE Processing Pipeline ccf3becb5e5d5eda97a62f6c540d1c68 https://www.encodeproject.org/files/ENCFF457YMP/@@download/ENCFF457YMP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF109LRM bigBed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF457YMP 3632308 ENCODE Processing Pipeline c94ccebcaf03bdbcebabfc3939cb54c6 https://www.encodeproject.org/files/ENCFF109LRM/@@download/ENCFF109LRM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF705SYY bigBed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF380VJA 2524796 ENCODE Processing Pipeline d21ed6399bfc63b61a3dbc6437d792fc https://www.encodeproject.org/files/ENCFF705SYY/@@download/ENCFF705SYY.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF380VJA bed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF305NCJ, ENCFF366UML 1206431 ENCODE Processing Pipeline fa9cff93eca0c3c080b6d27be5d2dbd3 https://www.encodeproject.org/files/ENCFF380VJA/@@download/ENCFF380VJA.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF480RZR bed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF305NCJ, ENCFF358IFT, ENCFF366UML 986220 ENCODE Processing Pipeline 74076b7597471aa1580aaca1e3f8a9c1 https://www.encodeproject.org/files/ENCFF480RZR/@@download/ENCFF480RZR.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF083FJE bigBed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF480RZR 2514062 ENCODE Processing Pipeline 07007fb662025d0e55719a9d3d8e63be https://www.encodeproject.org/files/ENCFF083FJE/@@download/ENCFF083FJE.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF206ZCM bigWig signal p-value ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF358IFT, ENCFF366UML 442047411 ENCODE Processing Pipeline 42cbafb941f9e2d7d4434dca5dc56f3c https://www.encodeproject.org/files/ENCFF206ZCM/@@download/ENCFF206ZCM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF836FIR bigWig signal p-value ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF305NCJ, ENCFF366UML 468451895 ENCODE Processing Pipeline f4ba51a29aa05d811fe3a73b6b988446 https://www.encodeproject.org/files/ENCFF836FIR/@@download/ENCFF836FIR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF086IGT bigWig signal p-value ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF305NCJ, ENCFF358IFT, ENCFF366UML 559046521 ENCODE Processing Pipeline 02472cd7b67bb3ddf4fa5ba8a6c22ea1 https://www.encodeproject.org/files/ENCFF086IGT/@@download/ENCFF086IGT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF092YMT bigWig fold change over control ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224PDN, ENCFF358IFT, ENCFF366UML 525730354 ENCODE Processing Pipeline dc4c8ea878702de68cc288880a7ac181 https://www.encodeproject.org/files/ENCFF092YMT/@@download/ENCFF092YMT.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF757KAQ bigWig fold change over control ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF224PDN, ENCFF305NCJ, ENCFF366UML 469543147 ENCODE Processing Pipeline 9f851682925fde9c22e1dc23aac5d6e3 https://www.encodeproject.org/files/ENCFF757KAQ/@@download/ENCFF757KAQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF203MWH bigWig fold change over control ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224PDN, ENCFF305NCJ, ENCFF358IFT, ENCFF366UML 793163437 ENCODE Processing Pipeline aca3193dbefd5fcecf2c4b1181aa6b3f https://www.encodeproject.org/files/ENCFF203MWH/@@download/ENCFF203MWH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF068TMU bed narrowPeak replicated peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF380VJA, ENCFF457YMP, ENCFF480RZR 873954 ENCODE Processing Pipeline ef33fad1e27addfdf6d5405a419ea646 https://www.encodeproject.org/files/ENCFF068TMU/@@download/ENCFF068TMU.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF410JCU bigBed narrowPeak replicated peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF068TMU 1904228 ENCODE Processing Pipeline 6707e66d3e4c861dcae1a09bd37ea979 https://www.encodeproject.org/files/ENCFF410JCU/@@download/ENCFF410JCU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF323PEA bam unfiltered alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTM, ENCFF018NEO, ENCFF063ROF 1925571077 ENCODE Processing Pipeline a6fb2ca1933b9ac43a841fb8f602d8d5 https://www.encodeproject.org/files/ENCFF323PEA/@@download/ENCFF323PEA.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF955WQM bam unfiltered alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTH, ENCFF018NEO, ENCFF585BGE 1569373231 ENCODE Processing Pipeline 436f4ac2108162f729bade2634cd2102 https://www.encodeproject.org/files/ENCFF955WQM/@@download/ENCFF955WQM.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF788NIR bam alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTH, ENCFF018NEO, ENCFF585BGE 1054178359 ENCODE Processing Pipeline c76b4a1b269e6b796412891e10a9f2f3 https://www.encodeproject.org/files/ENCFF788NIR/@@download/ENCFF788NIR.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF938PKS bam alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTM, ENCFF018NEO, ENCFF063ROF 1227085188 ENCODE Processing Pipeline 10e40475ef8edfcced4d87378ed39d2e https://www.encodeproject.org/files/ENCFF938PKS/@@download/ENCFF938PKS.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF159IFG bed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF886TCK, ENCFF938PKS 1756368 ENCODE Processing Pipeline 900e60d86fe80620cdb52fcf45736fdb https://www.encodeproject.org/files/ENCFF159IFG/@@download/ENCFF159IFG.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF171XLR bed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF788NIR, ENCFF856WFI, ENCFF886TCK, ENCFF938PKS 1007667 ENCODE Processing Pipeline fa27efc03e25802761725bd9ff43610e https://www.encodeproject.org/files/ENCFF171XLR/@@download/ENCFF171XLR.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF184MBI bed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF788NIR, ENCFF856WFI, ENCFF886TCK 1479566 ENCODE Processing Pipeline 9b4db7ca2fdcbb863e2508bdb0bc5766 https://www.encodeproject.org/files/ENCFF184MBI/@@download/ENCFF184MBI.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF065EAI bigBed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF159IFG 3596415 ENCODE Processing Pipeline 34fa67c6df48edb761c0b5fe9eed919b https://www.encodeproject.org/files/ENCFF065EAI/@@download/ENCFF065EAI.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF424GCN bigBed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF184MBI 3091275 ENCODE Processing Pipeline ca5f94b9d5536acf67e35257fb9f0278 https://www.encodeproject.org/files/ENCFF424GCN/@@download/ENCFF424GCN.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF992GIY bigBed narrowPeak peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF171XLR 2564914 ENCODE Processing Pipeline 07790c10de68be9199ee11a127b468d3 https://www.encodeproject.org/files/ENCFF992GIY/@@download/ENCFF992GIY.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF639YYJ bigWig signal p-value ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF886TCK, ENCFF938PKS 563687763 ENCODE Processing Pipeline 6aab70112b294655e4fc68f3b63f3318 https://www.encodeproject.org/files/ENCFF639YYJ/@@download/ENCFF639YYJ.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF409BSX bigWig signal p-value ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF788NIR, ENCFF856WFI, ENCFF886TCK 482525366 ENCODE Processing Pipeline b708af5abdc49016ceb9edf2a7725f9a https://www.encodeproject.org/files/ENCFF409BSX/@@download/ENCFF409BSX.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF973SKC bigWig signal p-value ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF788NIR, ENCFF856WFI, ENCFF886TCK, ENCFF938PKS 560834315 ENCODE Processing Pipeline ab08ac3b1bff9dd59a2961f2f36c3ba6 https://www.encodeproject.org/files/ENCFF973SKC/@@download/ENCFF973SKC.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF347OHC bigWig fold change over control ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF856WFI, ENCFF886TCK, ENCFF938PKS 511019770 ENCODE Processing Pipeline b03e3aebc4126b9298cf6047edb8d8ad https://www.encodeproject.org/files/ENCFF347OHC/@@download/ENCFF347OHC.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF227UGY bigWig fold change over control ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF788NIR, ENCFF856WFI, ENCFF886TCK 466709280 ENCODE Processing Pipeline 6b2a6d159110a48ae78ddb3cf40b3a89 https://www.encodeproject.org/files/ENCFF227UGY/@@download/ENCFF227UGY.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF551QTH bigWig fold change over control ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF788NIR, ENCFF856WFI, ENCFF886TCK, ENCFF938PKS 773463768 ENCODE Processing Pipeline f5fc523b5bc237619d67ba3b2e3d280d https://www.encodeproject.org/files/ENCFF551QTH/@@download/ENCFF551QTH.bigWig mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF701UXU bed narrowPeak replicated peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF159IFG, ENCFF171XLR, ENCFF184MBI 924907 ENCODE Processing Pipeline 3be555f8f3c316349e155ec29df56651 https://www.encodeproject.org/files/ENCFF701UXU/@@download/ENCFF701UXU.bed.gz mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF596FPG bigBed narrowPeak replicated peaks ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF701UXU 2004974 ENCODE Processing Pipeline bf20f7f2d290c9d1cfaa0173a4b98c67 https://www.encodeproject.org/files/ENCFF596FPG/@@download/ENCFF596FPG.bigBed mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AJA fastq reads ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1629100665 Bing Ren, UCSD 0b72272f942fe344fd8e753a10e635da SRA:SRR3652264 https://www.encodeproject.org/files/ENCFF002AJA/@@download/ENCFF002AJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARI/ released low read length, inconsistent control read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF002AJB fastq reads ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1666112736 Bing Ren, UCSD af0bed59c9e98ddbb11d3342a7f8f22b SRA:SRR3652265 https://www.encodeproject.org/files/ENCFF002AJB/@@download/ENCFF002AJB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARL/ released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF285RGA bam alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AJB, ENCFF806TVZ 1194649684 ENCODE Processing Pipeline 29ad122cba97d8d8d020fac85c84bb0d https://www.encodeproject.org/files/ENCFF285RGA/@@download/ENCFF285RGA.bam mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF169CGX bam alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AJA, ENCFF806TVZ 1510136872 ENCODE Processing Pipeline e92c2ee931c14f63d55063eaad18d85b https://www.encodeproject.org/files/ENCFF169CGX/@@download/ENCFF169CGX.bam mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF014HVU bed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF169CGX, ENCFF946XCS 2030181 ENCODE Processing Pipeline b0d254665e1e0ae74c43adadacd776df https://www.encodeproject.org/files/ENCFF014HVU/@@download/ENCFF014HVU.bed.gz mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF803AHO bigBed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF014HVU 3648814 ENCODE Processing Pipeline b0d5223320e9ac0643aa20e1c683650d https://www.encodeproject.org/files/ENCFF803AHO/@@download/ENCFF803AHO.bigBed mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF357UMC bed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF285RGA, ENCFF946XCS 1837904 ENCODE Processing Pipeline 292e900327e63f4c8b64540a2a38e5a2 https://www.encodeproject.org/files/ENCFF357UMC/@@download/ENCFF357UMC.bed.gz mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF069ACX bed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF169CGX, ENCFF285RGA, ENCFF946XCS 1781121 ENCODE Processing Pipeline bb117f97825ab40c003f742eaa07e75a https://www.encodeproject.org/files/ENCFF069ACX/@@download/ENCFF069ACX.bed.gz mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF625JMP bigBed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF069ACX 3054307 ENCODE Processing Pipeline 03ed757ff7a9ae0aa38f54d07691844b https://www.encodeproject.org/files/ENCFF625JMP/@@download/ENCFF625JMP.bigBed mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF164EEF bigBed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF357UMC 3438421 ENCODE Processing Pipeline 534ecaa20c1e4cf2f94ebdee7c2dd11f https://www.encodeproject.org/files/ENCFF164EEF/@@download/ENCFF164EEF.bigBed mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF051NMY bigWig signal p-value ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF169CGX, ENCFF946XCS 488258789 ENCODE Processing Pipeline 5ed8488dd10b2ffb892fa4815a3b3724 https://www.encodeproject.org/files/ENCFF051NMY/@@download/ENCFF051NMY.bigWig mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF382TAL bigWig signal p-value ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF285RGA, ENCFF946XCS 557660080 ENCODE Processing Pipeline dc05cc27eaf4a411a940fa853fe7c2f5 https://www.encodeproject.org/files/ENCFF382TAL/@@download/ENCFF382TAL.bigWig mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF920HQM bigWig signal p-value ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF169CGX, ENCFF285RGA, ENCFF946XCS 598654453 ENCODE Processing Pipeline 07807f2f1b463e2ccd81d6909934f0db https://www.encodeproject.org/files/ENCFF920HQM/@@download/ENCFF920HQM.bigWig mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF865IBY bigWig fold change over control ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF006YKR, ENCFF169CGX, ENCFF946XCS 493924312 ENCODE Processing Pipeline ac2556de0135aebc89b3be278d2e56d3 https://www.encodeproject.org/files/ENCFF865IBY/@@download/ENCFF865IBY.bigWig mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF131TIN bigWig fold change over control ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF006YKR, ENCFF285RGA, ENCFF946XCS 527333014 ENCODE Processing Pipeline 84489ad02bd2057106308ca8d5d137d0 https://www.encodeproject.org/files/ENCFF131TIN/@@download/ENCFF131TIN.bigWig mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF913GHK bigWig fold change over control ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF006YKR, ENCFF169CGX, ENCFF285RGA, ENCFF946XCS 806284173 ENCODE Processing Pipeline 7b82fab2b2da1d2271a63cd0ae71f21e https://www.encodeproject.org/files/ENCFF913GHK/@@download/ENCFF913GHK.bigWig mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF860UAY bigBed narrowPeak replicated peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF399ZAK 2121177 ENCODE Processing Pipeline 8fd70ea3cced927f5e4a3c0ab40f5606 https://www.encodeproject.org/files/ENCFF860UAY/@@download/ENCFF860UAY.bigBed mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF399ZAK bed narrowPeak replicated peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF014HVU, ENCFF069ACX, ENCFF357UMC 1304273 ENCODE Processing Pipeline 12e7603e008ef18be539f3be69a8d47a https://www.encodeproject.org/files/ENCFF399ZAK/@@download/ENCFF399ZAK.bed.gz mm10-minimal archived low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF644JNJ bam unfiltered alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJA, ENCFF018NEO 1688688337 ENCODE Processing Pipeline c7fbad2a8b3ea14d902044f5b5e4a4bb https://www.encodeproject.org/files/ENCFF644JNJ/@@download/ENCFF644JNJ.bam mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF306JBB bam unfiltered alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJB, ENCFF018NEO 1897183452 ENCODE Processing Pipeline 60b26247b2b9bab6706a65cb41c77aef https://www.encodeproject.org/files/ENCFF306JBB/@@download/ENCFF306JBB.bam mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF468OBA bam alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJA, ENCFF018NEO 1121676811 ENCODE Processing Pipeline c403a47ac07f7cf1f4d4424e6848770c https://www.encodeproject.org/files/ENCFF468OBA/@@download/ENCFF468OBA.bam mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF230CYH bam alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJB, ENCFF018NEO 1194301319 ENCODE Processing Pipeline 910672a44e81eb00777b4d28d00bdac8 https://www.encodeproject.org/files/ENCFF230CYH/@@download/ENCFF230CYH.bam mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF163MJI bed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF468OBA, ENCFF482UTL 1903877 ENCODE Processing Pipeline cc8ce56ec9c98cc9f042f06b526cb326 https://www.encodeproject.org/files/ENCFF163MJI/@@download/ENCFF163MJI.bed.gz mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF218CKI bed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF230CYH, ENCFF482UTL 456186 ENCODE Processing Pipeline 6fc78f67de6bab373daacec00fd93bee https://www.encodeproject.org/files/ENCFF218CKI/@@download/ENCFF218CKI.bed.gz mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF842XKJ bed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF230CYH, ENCFF292SSW, ENCFF468OBA, ENCFF482UTL 1719496 ENCODE Processing Pipeline a9b7c971568cd0fa471d4cf382e0c47e https://www.encodeproject.org/files/ENCFF842XKJ/@@download/ENCFF842XKJ.bed.gz mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF143BIR bigBed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF163MJI 3463856 ENCODE Processing Pipeline 14df8426c3932b3290139fdc5cee217c https://www.encodeproject.org/files/ENCFF143BIR/@@download/ENCFF143BIR.bigBed mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF530IMP bigBed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF218CKI 873433 ENCODE Processing Pipeline 469a69eb4f2418f22144a88b8f25441d https://www.encodeproject.org/files/ENCFF530IMP/@@download/ENCFF530IMP.bigBed mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF172UHK bigBed narrowPeak peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF842XKJ 2979304 ENCODE Processing Pipeline ab40d18e179f2e17f5f77e0aac5f5b93 https://www.encodeproject.org/files/ENCFF172UHK/@@download/ENCFF172UHK.bigBed mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF261XQH bigWig signal p-value ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF468OBA, ENCFF482UTL 495582752 ENCODE Processing Pipeline c5096f9b5114eecd3da2441b46ef8fde https://www.encodeproject.org/files/ENCFF261XQH/@@download/ENCFF261XQH.bigWig mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF052PCE bigWig signal p-value ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF230CYH, ENCFF482UTL 298584300 ENCODE Processing Pipeline 795cea125d702497972914eb563f3bc3 https://www.encodeproject.org/files/ENCFF052PCE/@@download/ENCFF052PCE.bigWig mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF484OZI bigWig signal p-value ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF230CYH, ENCFF292SSW, ENCFF468OBA, ENCFF482UTL 601427473 ENCODE Processing Pipeline 6410e018f7edeefb383e27b044622073 https://www.encodeproject.org/files/ENCFF484OZI/@@download/ENCFF484OZI.bigWig mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF106NRY bigWig fold change over control ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF292SSW, ENCFF468OBA, ENCFF482UTL 476632903 ENCODE Processing Pipeline 3866de0a9d24c4da258dcdfb30fadd6a https://www.encodeproject.org/files/ENCFF106NRY/@@download/ENCFF106NRY.bigWig mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF575TCI bigWig fold change over control ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF230CYH, ENCFF482UTL 406934883 ENCODE Processing Pipeline 05bb61efe28b4bc1060339453e12f73a https://www.encodeproject.org/files/ENCFF575TCI/@@download/ENCFF575TCI.bigWig mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF307IYH bigWig fold change over control ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF230CYH, ENCFF292SSW, ENCFF468OBA, ENCFF482UTL 795900548 ENCODE Processing Pipeline dad2a15db72124c17ddda4c4cd4d8cf5 https://www.encodeproject.org/files/ENCFF307IYH/@@download/ENCFF307IYH.bigWig mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF261KKK bed narrowPeak replicated peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF163MJI, ENCFF218CKI, ENCFF842XKJ 1063185 ENCODE Processing Pipeline 108aa9ebfd410f818c02c65f9b82c052 https://www.encodeproject.org/files/ENCFF261KKK/@@download/ENCFF261KKK.bed.gz mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF311RYB bigBed narrowPeak replicated peaks ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261KKK 1804773 ENCODE Processing Pipeline ffdc0e5f0d4e611535cdbef5619c1d7f https://www.encodeproject.org/files/ENCFF311RYB/@@download/ENCFF311RYB.bigBed mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF810KHC fastq reads ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 3 50 single-ended 1562357381 Bing Ren, UCSD d5efd116e39fe8ae205078e830c82420 SRA:SRR4235815 https://www.encodeproject.org/files/ENCFF810KHC/@@download/ENCFF810KHC.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF331EKQ fastq reads ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 1868541567 Bing Ren, UCSD 9b3b78c15fc21e86b98374069d58674f SRA:SRR4235812 https://www.encodeproject.org/files/ENCFF331EKQ/@@download/ENCFF331EKQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF014QMD fastq reads ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 3 50 single-ended 538514428 Bing Ren, UCSD 5457da87b2400461026b0f8683341786 SRA:SRR4235813 https://www.encodeproject.org/files/ENCFF014QMD/@@download/ENCFF014QMD.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF217BBI fastq reads ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 2 50 single-ended 2782303308 Bing Ren, UCSD 19a828e78caf4f432ddbd74d92d1492c SRA:SRR4235814 https://www.encodeproject.org/files/ENCFF217BBI/@@download/ENCFF217BBI.fastq.gz Illumina HiSeq 4000 /files/ENCFF914QXH/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF364QJC fastq reads ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 3116891018 Bing Ren, UCSD b84fe74f070cfd3a491ba4d050f49857 SRA:SRR4235816 https://www.encodeproject.org/files/ENCFF364QJC/@@download/ENCFF364QJC.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF448FRQ fastq reads ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 2 50 single-ended 1777800093 Bing Ren, UCSD 3955f234d73786ca045f48476006edfb SRA:SRR4235817 https://www.encodeproject.org/files/ENCFF448FRQ/@@download/ENCFF448FRQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF942UQV/ released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF885TIF bam unfiltered alignments ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF014QMD, ENCFF018NEO, ENCFF217BBI, ENCFF331EKQ 5570982606 ENCODE Processing Pipeline 6446933d98b92dfb355a257f6cfa03b4 https://www.encodeproject.org/files/ENCFF885TIF/@@download/ENCFF885TIF.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF452IBL bam unfiltered alignments ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF364QJC, ENCFF448FRQ, ENCFF810KHC 6954444508 ENCODE Processing Pipeline ea0aefe65051bc7a6b7f34cfec2cba43 https://www.encodeproject.org/files/ENCFF452IBL/@@download/ENCFF452IBL.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF742ORP bam alignments ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF014QMD, ENCFF018NEO, ENCFF217BBI, ENCFF331EKQ 1741072128 ENCODE Processing Pipeline 80b28500ea79e370a0fc96a9c7fbf612 https://www.encodeproject.org/files/ENCFF742ORP/@@download/ENCFF742ORP.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF842YQE bam alignments ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF364QJC, ENCFF448FRQ, ENCFF810KHC 1986908400 ENCODE Processing Pipeline 382d442c13e60d6de01b3b8824bb6384 https://www.encodeproject.org/files/ENCFF842YQE/@@download/ENCFF842YQE.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF366TJZ bed narrowPeak peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF842YQE 1753278 ENCODE Processing Pipeline 80abd4428484c1f8f2c7bb39f9e22aea https://www.encodeproject.org/files/ENCFF366TJZ/@@download/ENCFF366TJZ.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF571AQH bed narrowPeak peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF742ORP, ENCFF842YQE 2157734 ENCODE Processing Pipeline 5e137ad010fbc83579a341a3bd651d9c https://www.encodeproject.org/files/ENCFF571AQH/@@download/ENCFF571AQH.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF417DTW bigBed narrowPeak peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF366TJZ 4121488 ENCODE Processing Pipeline 2a25afdb39fe8ce1c82e71c35bea8f63 https://www.encodeproject.org/files/ENCFF417DTW/@@download/ENCFF417DTW.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF624TYK bed narrowPeak peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF528BOJ, ENCFF742ORP 2292062 ENCODE Processing Pipeline f5cb22f9d0bce710f6ab24ae6a718d33 https://www.encodeproject.org/files/ENCFF624TYK/@@download/ENCFF624TYK.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF101KHJ bigBed narrowPeak peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF624TYK 5262396 ENCODE Processing Pipeline fe69b689b6679ccc9aebfc8bb7cab0ae https://www.encodeproject.org/files/ENCFF101KHJ/@@download/ENCFF101KHJ.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF292IUN bigWig signal p-value ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF842YQE 804755065 ENCODE Processing Pipeline 9b7ad4f92e074d219df142b2e53067f3 https://www.encodeproject.org/files/ENCFF292IUN/@@download/ENCFF292IUN.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF232UDU bigBed narrowPeak peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF571AQH 4912324 ENCODE Processing Pipeline 240ba3d26c962dca8347fa2eaceca42e https://www.encodeproject.org/files/ENCFF232UDU/@@download/ENCFF232UDU.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF268LQK bigWig signal p-value ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF528BOJ, ENCFF742ORP 668125876 ENCODE Processing Pipeline 451196a9612914e6cd166cc7bdef24fc https://www.encodeproject.org/files/ENCFF268LQK/@@download/ENCFF268LQK.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF811JEQ bigWig fold change over control ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF528BOJ, ENCFF742ORP 783589741 ENCODE Processing Pipeline 5fd3610f275efba1176a99660c4aa781 https://www.encodeproject.org/files/ENCFF811JEQ/@@download/ENCFF811JEQ.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF705OEK bigWig signal p-value ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF742ORP, ENCFF842YQE 1116211689 ENCODE Processing Pipeline 38b0d881828169891408e2ad67c5d373 https://www.encodeproject.org/files/ENCFF705OEK/@@download/ENCFF705OEK.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF423HZW bigWig fold change over control ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF298TEL, ENCFF842YQE 867363237 ENCODE Processing Pipeline 6d8e0454a91345cf0aac211f5396251a https://www.encodeproject.org/files/ENCFF423HZW/@@download/ENCFF423HZW.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF293RMV bigWig fold change over control ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF298TEL, ENCFF528BOJ, ENCFF742ORP, ENCFF842YQE 1381972103 ENCODE Processing Pipeline 43f74e7c1ea583c863a7ceddcc528126 https://www.encodeproject.org/files/ENCFF293RMV/@@download/ENCFF293RMV.bigWig mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF942MEP bed narrowPeak replicated peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF366TJZ, ENCFF571AQH, ENCFF624TYK 1414769 ENCODE Processing Pipeline d7526aa1b1a0227f501b1484ca795ee6 https://www.encodeproject.org/files/ENCFF942MEP/@@download/ENCFF942MEP.bed.gz mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF574ROI bigBed narrowPeak replicated peaks ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF942MEP 2686323 ENCODE Processing Pipeline 40deb2964cbc8cd2f2e5acc4d0d08043 https://www.encodeproject.org/files/ENCFF574ROI/@@download/ENCFF574ROI.bigBed mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF001LZZ bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MAG 1070804094 Ross Hardison, PennState 576ac87a5ffe27ee2cb355d2ad2f44c2 https://www.encodeproject.org/files/ENCFF001LZZ/@@download/ENCFF001LZZ.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MAA bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MAI 798011477 Ross Hardison, PennState ff23138c24ec164cdd215d82ac64867d https://www.encodeproject.org/files/ENCFF001MAA/@@download/ENCFF001MAA.bam mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MAB bigBed broadPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YCX 2390703 Ross Hardison, PennState c1d88a6e6a3cf5f5721eb5b47872148d https://www.encodeproject.org/files/ENCFF001MAB/@@download/ENCFF001MAB.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MAD bigBed broadPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCY 2463835 Ross Hardison, PennState e69a0a7d1e49cc28c4387b6996c0bb18 https://www.encodeproject.org/files/ENCFF001MAD/@@download/ENCFF001MAD.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MAE bigBed broadPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCZ 2339100 Ross Hardison, PennState 1f1dd86c34caba044857a7857731d52f https://www.encodeproject.org/files/ENCFF001MAE/@@download/ENCFF001MAE.bigBed mm9 archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MAF bigWig signal ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 3161270216 Ross Hardison, PennState 3209a1de404dbebdef4ec6342e773a89 https://www.encodeproject.org/files/ENCFF001MAF/@@download/ENCFF001MAF.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MAG fastq reads ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 36 single-ended 868869664 Ross Hardison, PennState 6b97aa1efdccc6f13b3c305d10ff1d13 https://www.encodeproject.org/files/ENCFF001MAG/@@download/ENCFF001MAG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001MAH bigWig signal ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 3077084237 Ross Hardison, PennState 27c2ba5832efc1c870fb3768129f4c83 https://www.encodeproject.org/files/ENCFF001MAH/@@download/ENCFF001MAH.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001MAI fastq reads ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 36 single-ended 621374344 Ross Hardison, PennState b00dcff909db93100a76068047d70986 https://www.encodeproject.org/files/ENCFF001MAI/@@download/ENCFF001MAI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released low read length, inconsistent platforms, inconsistent control read length biological replicates with identical biosample insufficient read depth ENCFF001MAK bigWig signal ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 4235874161 Ross Hardison, PennState 481649774165d40982002f4896a52255 https://www.encodeproject.org/files/ENCFF001MAK/@@download/ENCFF001MAK.bigWig mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YCX bed broadPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 953410 Ross Hardison, PennState 8495266569b8f694d99973c84daab623 https://www.encodeproject.org/files/ENCFF001YCX/@@download/ENCFF001YCX.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YCY bed broadPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 852725 Ross Hardison, PennState 06f651857b523c0ad00c59b2c8259fd2 https://www.encodeproject.org/files/ENCFF001YCY/@@download/ENCFF001YCY.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001YCZ bed broadPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 841348 Ross Hardison, PennState fd0bb13c0f786edadb183e1ce0c8fb59 https://www.encodeproject.org/files/ENCFF001YCZ/@@download/ENCFF001YCZ.bed.gz mm9 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF707AXN bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MAG, ENCFF806TVZ 684572164 ENCODE Processing Pipeline 1f72c975722c28804f086aafdbdcc45a https://www.encodeproject.org/files/ENCFF707AXN/@@download/ENCFF707AXN.bam mm10-minimal archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF578ECA bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MAI, ENCFF806TVZ 635113643 ENCODE Processing Pipeline f174b9a515708db0cfd95ccbd81586cc https://www.encodeproject.org/files/ENCFF578ECA/@@download/ENCFF578ECA.bam mm10-minimal archived low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF055AIW bam unfiltered alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAI, ENCFF018NEO 840342165 ENCODE Processing Pipeline beb143f829c0d8919e31fa75cbad78e8 https://www.encodeproject.org/files/ENCFF055AIW/@@download/ENCFF055AIW.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF313TWM bam unfiltered alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAG, ENCFF018NEO 1120948996 ENCODE Processing Pipeline 6db9463925611a7f1133cb2d63da88dd https://www.encodeproject.org/files/ENCFF313TWM/@@download/ENCFF313TWM.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF836HLY bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAI, ENCFF018NEO 634972254 ENCODE Processing Pipeline 5a55efb7db8ea53e605b8ed311080dc4 https://www.encodeproject.org/files/ENCFF836HLY/@@download/ENCFF836HLY.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF439TPF bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAG, ENCFF018NEO 684389214 ENCODE Processing Pipeline 2123589c97101697b4b9a72263447824 https://www.encodeproject.org/files/ENCFF439TPF/@@download/ENCFF439TPF.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF608EUY bed narrowPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF439TPF, ENCFF984QUA 4047382 ENCODE Processing Pipeline a2d9f547650b5b71773c6831217a115b https://www.encodeproject.org/files/ENCFF608EUY/@@download/ENCFF608EUY.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF143WCZ bed narrowPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF836HLY, ENCFF984QUA 4051293 ENCODE Processing Pipeline 7f553826fcee1bdfff31b25000e94be6 https://www.encodeproject.org/files/ENCFF143WCZ/@@download/ENCFF143WCZ.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF430AQU bigBed narrowPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF183OTC 12902157 ENCODE Processing Pipeline 0a7223593586a34f5c4566c5ad7b8963 https://www.encodeproject.org/files/ENCFF430AQU/@@download/ENCFF430AQU.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF183OTC bed narrowPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF439TPF, ENCFF836HLY, ENCFF984QUA 5074812 ENCODE Processing Pipeline c8b58caba2679111cefc5488d9ec2ac7 https://www.encodeproject.org/files/ENCFF183OTC/@@download/ENCFF183OTC.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF332UUS bigWig signal p-value ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF439TPF, ENCFF984QUA 813570017 ENCODE Processing Pipeline 30c2d570c01649306f4b9fe7e021815b https://www.encodeproject.org/files/ENCFF332UUS/@@download/ENCFF332UUS.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF539UJL bigBed narrowPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF143WCZ 7934425 ENCODE Processing Pipeline b8b451a877172b1a2acc10a072f57dee https://www.encodeproject.org/files/ENCFF539UJL/@@download/ENCFF539UJL.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF190BCU bigBed narrowPeak peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF608EUY 8615141 ENCODE Processing Pipeline bd74d701d1fb1da5e065fca6ba8f62a1 https://www.encodeproject.org/files/ENCFF190BCU/@@download/ENCFF190BCU.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF364YWE bigWig signal p-value ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF836HLY, ENCFF984QUA 764211710 ENCODE Processing Pipeline f1b348b551b63266d6156a79ff9778a7 https://www.encodeproject.org/files/ENCFF364YWE/@@download/ENCFF364YWE.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF302KKT bigWig signal p-value ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF439TPF, ENCFF836HLY, ENCFF984QUA 1022625532 ENCODE Processing Pipeline a83945c9d5cf31a51375ebfe7cfafd30 https://www.encodeproject.org/files/ENCFF302KKT/@@download/ENCFF302KKT.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF262YKE bigWig fold change over control ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF089UFL, ENCFF439TPF, ENCFF984QUA 549330073 ENCODE Processing Pipeline 379bdf56646f5312ad385cadd4aea27b https://www.encodeproject.org/files/ENCFF262YKE/@@download/ENCFF262YKE.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF677FTU bigWig fold change over control ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF089UFL, ENCFF836HLY, ENCFF984QUA 561796879 ENCODE Processing Pipeline 2d92f42004749698aa04d62acd1b774b https://www.encodeproject.org/files/ENCFF677FTU/@@download/ENCFF677FTU.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF541KFF bigWig fold change over control ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF089UFL, ENCFF439TPF, ENCFF836HLY, ENCFF984QUA 837450124 ENCODE Processing Pipeline 0cca9ecce9c33d8f2876104e9b1e5cc9 https://www.encodeproject.org/files/ENCFF541KFF/@@download/ENCFF541KFF.bigWig mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF240FBD bed narrowPeak replicated peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF143WCZ, ENCFF183OTC, ENCFF608EUY 3525465 ENCODE Processing Pipeline fc9d9a9366787ba8da9fe108ba13ed19 https://www.encodeproject.org/files/ENCFF240FBD/@@download/ENCFF240FBD.bed.gz mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF579JKC bigBed narrowPeak replicated peaks ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF240FBD 6819595 ENCODE Processing Pipeline f80d57ca25343862326572ea7bb337eb https://www.encodeproject.org/files/ENCFF579JKC/@@download/ENCFF579JKC.bigBed mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF001KOB bam alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KOH 218419914 Bing Ren, UCSD 028448414cb694881390223d24fd1407 https://www.encodeproject.org/files/ENCFF001KOB/@@download/ENCFF001KOB.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001KOC bigBed broadPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XYD 408836 Bing Ren, UCSD 679521a4e735a111f7e7c47cd06662f4 https://www.encodeproject.org/files/ENCFF001KOC/@@download/ENCFF001KOC.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001KOD bam alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KOP 536790753 Bing Ren, UCSD 4057e57411da2893651601921d5a0877 https://www.encodeproject.org/files/ENCFF001KOD/@@download/ENCFF001KOD.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001KOF bigWig signal ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KOB, ENCFF001KOD 46207366 Bing Ren, UCSD 8ccd92a05a0915a82babe507c1a2bf3d https://www.encodeproject.org/files/ENCFF001KOF/@@download/ENCFF001KOF.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001KOH fastq reads ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 243613409 Bing Ren, UCSD 75266adff6088022367518ee96c39ee6 https://www.encodeproject.org/files/ENCFF001KOH/@@download/ENCFF001KOH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOQ/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001KOP fastq reads ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 839056618 Bing Ren, UCSD 27f26ea62366aa40947feb41a3606f6e https://www.encodeproject.org/files/ENCFF001KOP/@@download/ENCFF001KOP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOV/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001XYD bed broadPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KOB, ENCFF001KOD 272011 Bing Ren, UCSD 4ed24edaf73288aa5ca5eeceb9f58b7e https://www.encodeproject.org/files/ENCFF001XYD/@@download/ENCFF001XYD.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF237CJS bam unfiltered alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KOH, ENCFF018NEO 259414993 ENCODE Processing Pipeline 7616c2195ad026302f638a0a6f3f0a3a https://www.encodeproject.org/files/ENCFF237CJS/@@download/ENCFF237CJS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF149IHX bam unfiltered alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KOP, ENCFF018NEO 879472566 ENCODE Processing Pipeline 626b848990153740a1badaf97710b1e3 https://www.encodeproject.org/files/ENCFF149IHX/@@download/ENCFF149IHX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF786TWP bam alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KOP, ENCFF018NEO 510078561 ENCODE Processing Pipeline 48144c7e230803ae926fe0b42330d2e0 https://www.encodeproject.org/files/ENCFF786TWP/@@download/ENCFF786TWP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF715GVN bam alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KOH, ENCFF018NEO 175680077 ENCODE Processing Pipeline e9cdd85f33666cb26ec2b511935f67b8 https://www.encodeproject.org/files/ENCFF715GVN/@@download/ENCFF715GVN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF635WGY bigBed narrowPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF543QNI 2584689 ENCODE Processing Pipeline 43e5ff33806d26525b639935c5f5b32b https://www.encodeproject.org/files/ENCFF635WGY/@@download/ENCFF635WGY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF799YDB bigWig signal p-value ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF493MBH, ENCFF715GVN, ENCFF738EUE 196800094 ENCODE Processing Pipeline 61c84709eb6ec4a9d3b754e5e0a231aa https://www.encodeproject.org/files/ENCFF799YDB/@@download/ENCFF799YDB.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF543QNI bed narrowPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF493MBH, ENCFF738EUE, ENCFF786TWP 891924 ENCODE Processing Pipeline 8099d442d4d4dd593ad3e1544445a5b1 https://www.encodeproject.org/files/ENCFF543QNI/@@download/ENCFF543QNI.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF129AJD bigBed narrowPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF089OAC 2339322 ENCODE Processing Pipeline c9dc5cd18831e63007eaba798d203df3 https://www.encodeproject.org/files/ENCFF129AJD/@@download/ENCFF129AJD.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF089OAC bed narrowPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF493MBH, ENCFF715GVN, ENCFF738EUE, ENCFF786TWP 800438 ENCODE Processing Pipeline 0448464a680c1cf3022370cb78913c2e https://www.encodeproject.org/files/ENCFF089OAC/@@download/ENCFF089OAC.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF863AFJ bigWig signal p-value ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF493MBH, ENCFF715GVN, ENCFF738EUE, ENCFF786TWP 231268496 ENCODE Processing Pipeline 83244ba47d2ad4d89965b72969f09b25 https://www.encodeproject.org/files/ENCFF863AFJ/@@download/ENCFF863AFJ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF145GDL bigBed narrowPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF129FUY 2192896 ENCODE Processing Pipeline ba6bba764b57fb653d51df34ef1a0cae https://www.encodeproject.org/files/ENCFF145GDL/@@download/ENCFF145GDL.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF129FUY bed narrowPeak peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF493MBH, ENCFF715GVN, ENCFF738EUE 703303 ENCODE Processing Pipeline e5988e6a07e130452f715b14a8c2f9c4 https://www.encodeproject.org/files/ENCFF129FUY/@@download/ENCFF129FUY.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF355FME bigWig signal p-value ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF493MBH, ENCFF738EUE, ENCFF786TWP 230016768 ENCODE Processing Pipeline c652e66645709ab7d390f84a68e0e672 https://www.encodeproject.org/files/ENCFF355FME/@@download/ENCFF355FME.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF301NXX bigWig fold change over control ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF493MBH, ENCFF715GVN, ENCFF738EUE 64924848 ENCODE Processing Pipeline 8b6b0d16cff0248f40abb9f0391b6e96 https://www.encodeproject.org/files/ENCFF301NXX/@@download/ENCFF301NXX.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF081HVT bigWig fold change over control ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF493MBH, ENCFF738EUE, ENCFF786TWP 152081973 ENCODE Processing Pipeline 16979d0e7295eb7b655026021cf3393b https://www.encodeproject.org/files/ENCFF081HVT/@@download/ENCFF081HVT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF705UNQ bigBed narrowPeak replicated peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF508WEP 2092297 ENCODE Processing Pipeline 2c4a20931b0a3099e42a3ee2bff8839c https://www.encodeproject.org/files/ENCFF705UNQ/@@download/ENCFF705UNQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF944BPE bigWig fold change over control ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF493MBH, ENCFF715GVN, ENCFF738EUE, ENCFF786TWP 187114916 ENCODE Processing Pipeline d94f7172b52692782fe6b6d87b68a8c1 https://www.encodeproject.org/files/ENCFF944BPE/@@download/ENCFF944BPE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF508WEP bed narrowPeak replicated peaks ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF089OAC, ENCFF129FUY, ENCFF543QNI 960858 ENCODE Processing Pipeline 16238b9ed8d24918f90db9048f0aabe5 https://www.encodeproject.org/files/ENCFF508WEP/@@download/ENCFF508WEP.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001LWB bigBed broadPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YBW 1121055 Ross Hardison, PennState fecf8b5978b11110d0fac58a0dab49ea https://www.encodeproject.org/files/ENCFF001LWB/@@download/ENCFF001LWB.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LWC bam alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LWI 5207617121 Ross Hardison, PennState c5ca57ae60d94f707688e895c7c244d8 https://www.encodeproject.org/files/ENCFF001LWC/@@download/ENCFF001LWC.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LWD bam alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LWL 4692060434 Ross Hardison, PennState f2676c5f362d83ead172f99d868eea93 https://www.encodeproject.org/files/ENCFF001LWD/@@download/ENCFF001LWD.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LWE bigBed broadPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YBX 1334588 Ross Hardison, PennState ab2beb7da551542fdd2c8ab41f138687 https://www.encodeproject.org/files/ENCFF001LWE/@@download/ENCFF001LWE.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LWF bigBed broadPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YBY 1102864 Ross Hardison, PennState b503e4dab13dd5cbbfd91c87490e7c8a https://www.encodeproject.org/files/ENCFF001LWF/@@download/ENCFF001LWF.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001LWG bigWig signal ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5451577129 Ross Hardison, PennState 729564ff1615646ce49c8e748dd5c512 https://www.encodeproject.org/files/ENCFF001LWG/@@download/ENCFF001LWG.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LWH bigWig signal ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 4589085576 Ross Hardison, PennState 2c7fd7f088814aad49260ab9b5cea769 https://www.encodeproject.org/files/ENCFF001LWH/@@download/ENCFF001LWH.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LWI fastq reads ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 4825935463 Ross Hardison, PennState e10c44f6443aec1664296090437a96ca https://www.encodeproject.org/files/ENCFF001LWI/@@download/ENCFF001LWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLS/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001LWJ bigWig signal ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 5960587928 Ross Hardison, PennState 6ca230f6caf6dd3776107e191986249b https://www.encodeproject.org/files/ENCFF001LWJ/@@download/ENCFF001LWJ.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001LWL fastq reads ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 48 single-ended 4481835358 Ross Hardison, PennState 9030eb6ba79ceb54aa852fdc2bb9ee45 https://www.encodeproject.org/files/ENCFF001LWL/@@download/ENCFF001LWL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLY/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001YBW bed broadPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 666262 Ross Hardison, PennState 14805e857c7088b116ac4413799b53cd https://www.encodeproject.org/files/ENCFF001YBW/@@download/ENCFF001YBW.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YBX bed broadPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 773254 Ross Hardison, PennState 19c6e61d2cb02d9f1da29345c80af4ab https://www.encodeproject.org/files/ENCFF001YBX/@@download/ENCFF001YBX.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YBY bed broadPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 648875 Ross Hardison, PennState 566d50a8361a653b7520e0a0ed3ca94d https://www.encodeproject.org/files/ENCFF001YBY/@@download/ENCFF001YBY.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF623LKU bam unfiltered alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LWI, ENCFF018NEO 4168097255 ENCODE Processing Pipeline 47b86b71f1912dfa82274fcf832ce1c4 https://www.encodeproject.org/files/ENCFF623LKU/@@download/ENCFF623LKU.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF354ULG bam unfiltered alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LWL, ENCFF018NEO 4174915320 ENCODE Processing Pipeline 68904892d1160896385a847b2ae55740 https://www.encodeproject.org/files/ENCFF354ULG/@@download/ENCFF354ULG.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF692DWM bam alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LWI, ENCFF018NEO 2952272669 ENCODE Processing Pipeline 6920b259e85273b2a284f46e2e60b8a0 https://www.encodeproject.org/files/ENCFF692DWM/@@download/ENCFF692DWM.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF475YCJ bam alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LWL, ENCFF018NEO 3102665016 ENCODE Processing Pipeline c5f38e555c13007d3e6327d494dfd36c https://www.encodeproject.org/files/ENCFF475YCJ/@@download/ENCFF475YCJ.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF846TBG bed narrowPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF692DWM, ENCFF867VYO 5069984 ENCODE Processing Pipeline d6fb41ddefd13b91423ed2980d32e1f7 https://www.encodeproject.org/files/ENCFF846TBG/@@download/ENCFF846TBG.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF418RMP bed narrowPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF475YCJ, ENCFF867VYO 3790111 ENCODE Processing Pipeline 74f9829ad5692b0c4738b7bb198fcd09 https://www.encodeproject.org/files/ENCFF418RMP/@@download/ENCFF418RMP.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF977HCT bed narrowPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF475YCJ, ENCFF692DWM, ENCFF867VYO 4645244 ENCODE Processing Pipeline 22ee7161605774e27bc76cb22ccdf04d https://www.encodeproject.org/files/ENCFF977HCT/@@download/ENCFF977HCT.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF085SVM bigBed narrowPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF418RMP 7789027 ENCODE Processing Pipeline 93478cf66b05c78577bf0bb636e4786a https://www.encodeproject.org/files/ENCFF085SVM/@@download/ENCFF085SVM.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF682GEC bigBed narrowPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF846TBG 10958701 ENCODE Processing Pipeline a64015e7173a06fec77a2715a153d68c https://www.encodeproject.org/files/ENCFF682GEC/@@download/ENCFF682GEC.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF452YMJ bigBed narrowPeak peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF977HCT 9715542 ENCODE Processing Pipeline cc495a4ec86f30ad3ded7139c5e6074a https://www.encodeproject.org/files/ENCFF452YMJ/@@download/ENCFF452YMJ.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF048NMQ bigWig signal p-value ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF692DWM, ENCFF867VYO 1437916683 ENCODE Processing Pipeline 342363eed15df0dc84deced36a7cb520 https://www.encodeproject.org/files/ENCFF048NMQ/@@download/ENCFF048NMQ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF446TWV bigWig signal p-value ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF475YCJ, ENCFF867VYO 1040585259 ENCODE Processing Pipeline 56ce3e1b2e3233ce5b16d27499635a8c https://www.encodeproject.org/files/ENCFF446TWV/@@download/ENCFF446TWV.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF983VVO bigWig signal p-value ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF475YCJ, ENCFF692DWM, ENCFF867VYO 1520107829 ENCODE Processing Pipeline 01219d21791809639da9d4a40abc1ed7 https://www.encodeproject.org/files/ENCFF983VVO/@@download/ENCFF983VVO.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF745TDM bigWig fold change over control ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF318FKF, ENCFF692DWM, ENCFF867VYO 1354626184 ENCODE Processing Pipeline 48e512905455209c68476d32bb99c9d5 https://www.encodeproject.org/files/ENCFF745TDM/@@download/ENCFF745TDM.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF284KJB bigWig fold change over control ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF318FKF, ENCFF475YCJ, ENCFF867VYO 1171338313 ENCODE Processing Pipeline c4d4e4686541824550cc5f22acfc68aa https://www.encodeproject.org/files/ENCFF284KJB/@@download/ENCFF284KJB.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF601MZE bigWig fold change over control ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF318FKF, ENCFF475YCJ, ENCFF692DWM, ENCFF867VYO 1813614330 ENCODE Processing Pipeline 6368b967a1470ffeb63c9d7327d2ecc6 https://www.encodeproject.org/files/ENCFF601MZE/@@download/ENCFF601MZE.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF951BRK bed narrowPeak replicated peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF418RMP, ENCFF846TBG, ENCFF977HCT 5518151 ENCODE Processing Pipeline ed9a0b692b1009d08117897c672453f6 https://www.encodeproject.org/files/ENCFF951BRK/@@download/ENCFF951BRK.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF077INB bigBed narrowPeak replicated peaks ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF951BRK 8294892 ENCODE Processing Pipeline 23f4df1729f472e79f60ec778478c07f https://www.encodeproject.org/files/ENCFF077INB/@@download/ENCFF077INB.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF001NOJ bigBed narrowPeak peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIY 1105679 Michael Snyder, Stanford 88e711da07224b5eac076d2953ac5743 https://www.encodeproject.org/files/ENCFF001NOJ/@@download/ENCFF001NOJ.bigBed mm9 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOK fastq reads ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 756106339 Michael Snyder, Stanford 2c1160b93363252494e830a43d75a2c8 https://www.encodeproject.org/files/ENCFF001NOK/@@download/ENCFF001NOK.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOL bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NOK 362997849 Michael Snyder, Stanford fe951813248a3d224f86dafbc18adf26 https://www.encodeproject.org/files/ENCFF001NOL/@@download/ENCFF001NOL.bam mm9 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NON fastq reads ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1423653479 Michael Snyder, Stanford 9723a6dd2f002b60b5f96be9341ca2b8 https://www.encodeproject.org/files/ENCFF001NON/@@download/ENCFF001NON.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOO bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NON 415145074 Michael Snyder, Stanford 0eb0ea3224e8e4a5a02424a80ed64a96 https://www.encodeproject.org/files/ENCFF001NOO/@@download/ENCFF001NOO.bam mm9 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NOQ bigWig signal ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOL, ENCFF001NOO 133726605 Michael Snyder, Stanford 56eece557e0b75fbc8b6e7839c3597e7 https://www.encodeproject.org/files/ENCFF001NOQ/@@download/ENCFF001NOQ.bigWig mm9 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001YIY bed narrowPeak peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOL, ENCFF001NOO 459375 Michael Snyder, Stanford 2bd4b919b30e0feb593af9eb2698834f https://www.encodeproject.org/files/ENCFF001YIY/@@download/ENCFF001YIY.bed.gz mm9 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF070AAM bam unfiltered alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOK, ENCFF018NEO 838988558 ENCODE Processing Pipeline 665b6464c507f67a7cee85b860c45977 https://www.encodeproject.org/files/ENCFF070AAM/@@download/ENCFF070AAM.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF220KIF bam unfiltered alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NON, ENCFF018NEO 1468446867 ENCODE Processing Pipeline 06ab976ba26422ca51c41caed9d477e0 https://www.encodeproject.org/files/ENCFF220KIF/@@download/ENCFF220KIF.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF203OQV bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NON, ENCFF018NEO 660029638 ENCODE Processing Pipeline 914816e14beddad500d2962e04271c98 https://www.encodeproject.org/files/ENCFF203OQV/@@download/ENCFF203OQV.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF530IHQ bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOK, ENCFF018NEO 515801628 ENCODE Processing Pipeline cbbe46b5624d785e233e85d14c0f8290 https://www.encodeproject.org/files/ENCFF530IHQ/@@download/ENCFF530IHQ.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF966JZI bigWig signal p-value ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF203OQV, ENCFF966YUS 411395826 ENCODE Processing Pipeline c2566f7c6f95476dde635487747fec70 https://www.encodeproject.org/files/ENCFF966JZI/@@download/ENCFF966JZI.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF223JDA bigWig signal p-value ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF530IHQ, ENCFF966YUS 388126880 ENCODE Processing Pipeline 826b312ca65f48b5343c88313d3a5aa5 https://www.encodeproject.org/files/ENCFF223JDA/@@download/ENCFF223JDA.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF622XJI bigWig signal p-value ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF203OQV, ENCFF530IHQ, ENCFF966YUS 470841559 ENCODE Processing Pipeline 1c6dc675f3ab06537e45cdc08161a2b2 https://www.encodeproject.org/files/ENCFF622XJI/@@download/ENCFF622XJI.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF865CED bigWig fold change over control ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF530IHQ, ENCFF966YUS 292613779 ENCODE Processing Pipeline f0891de4971c5044511210ab2f22d6bf https://www.encodeproject.org/files/ENCFF865CED/@@download/ENCFF865CED.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF705NWZ bigWig fold change over control ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF203OQV, ENCFF966YUS 333089475 ENCODE Processing Pipeline 713a2cfcea35cb767b0ce2b0664f0c81 https://www.encodeproject.org/files/ENCFF705NWZ/@@download/ENCFF705NWZ.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF643WMY bigWig fold change over control ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF203OQV, ENCFF530IHQ, ENCFF966YUS 500488112 ENCODE Processing Pipeline 7d9526ebc02054af44eeb7e1e382cb14 https://www.encodeproject.org/files/ENCFF643WMY/@@download/ENCFF643WMY.bigWig mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF338BOV bed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF074LDJ, ENCFF530IHQ, ENCFF966YUS 5317047 ENCODE Processing Pipeline b4ab721e7117c4011d84345050f47a33 https://www.encodeproject.org/files/ENCFF338BOV/@@download/ENCFF338BOV.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF488MCL bigBed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF338BOV 13240798 ENCODE Processing Pipeline 6ed8646bb52198b5aed6cbf78907dcc1 https://www.encodeproject.org/files/ENCFF488MCL/@@download/ENCFF488MCL.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF869DLF bed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF074LDJ, ENCFF203OQV, ENCFF966YUS 5250036 ENCODE Processing Pipeline fcd5150c368f1641d5a652d7f301d735 https://www.encodeproject.org/files/ENCFF869DLF/@@download/ENCFF869DLF.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF456SWU bed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF074LDJ, ENCFF203OQV, ENCFF530IHQ, ENCFF966YUS 6100853 ENCODE Processing Pipeline a64f428a552680ef7ca0a77a524dc404 https://www.encodeproject.org/files/ENCFF456SWU/@@download/ENCFF456SWU.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF715TCK bigBed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF869DLF 11048459 ENCODE Processing Pipeline 795dfb61c4dcf0bcf708e0d762008047 https://www.encodeproject.org/files/ENCFF715TCK/@@download/ENCFF715TCK.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF679DTU bigBed narrowPeak peaks and background as input for IDR ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF456SWU 13511342 ENCODE Processing Pipeline b5e0b8ad333130d81fc9938e1daa90f5 https://www.encodeproject.org/files/ENCFF679DTU/@@download/ENCFF679DTU.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF960DFA bed narrowPeak conservative idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF338BOV, ENCFF456SWU, ENCFF547MET, ENCFF869DLF 402653 ENCODE Processing Pipeline ff3c208fff26d996b02d612786285fd1 https://www.encodeproject.org/files/ENCFF960DFA/@@download/ENCFF960DFA.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF992UWP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF960DFA 726722 ENCODE Processing Pipeline dc5f29095b12a05b65a7661212a613a0 https://www.encodeproject.org/files/ENCFF992UWP/@@download/ENCFF992UWP.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF255MHA bed narrowPeak optimal idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF338BOV, ENCFF456SWU, ENCFF547MET, ENCFF869DLF 419921 ENCODE Processing Pipeline 5134699728e120b67018ddd72f2ad547 https://www.encodeproject.org/files/ENCFF255MHA/@@download/ENCFF255MHA.bed.gz mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF358QMX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF255MHA 750894 ENCODE Processing Pipeline 543210c0c3acb79ed9f1a3379e79c4e2 https://www.encodeproject.org/files/ENCFF358QMX/@@download/ENCFF358QMX.bigBed mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001KQY bam alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KRJ 364351689 Bing Ren, UCSD 9abbbb4e032be425f553b48ed78f052a https://www.encodeproject.org/files/ENCFF001KQY/@@download/ENCFF001KQY.bam mm9 released low read length insufficient read depth ENCFF001KRB bam alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KRK 409913356 Bing Ren, UCSD d1389eb3ff084ba31eeaf84393ccd05a https://www.encodeproject.org/files/ENCFF001KRB/@@download/ENCFF001KRB.bam mm9 released low read length insufficient read depth ENCFF001KRC bigWig signal ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KQY, ENCFF001KRB 69276820 Bing Ren, UCSD 926c64beda2f566d2cfc7fad456083f9 https://www.encodeproject.org/files/ENCFF001KRC/@@download/ENCFF001KRC.bigWig mm9 released low read length insufficient read depth ENCFF001KRJ fastq reads ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 337624775 Bing Ren, UCSD 7e4dbde364ebcf3c159a7cd0b254aff4 https://www.encodeproject.org/files/ENCFF001KRJ/@@download/ENCFF001KRJ.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth ENCFF001KRK fastq reads ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 379664653 Bing Ren, UCSD 245d9aabc5f6f70a7e0fb200fb03e59e https://www.encodeproject.org/files/ENCFF001KRK/@@download/ENCFF001KRK.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth ENCFF337URA bam unfiltered alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KRK, ENCFF806TVZ 462410262 J. Michael Cherry, Stanford e5531142c1a9c79d0795f50f7eca23c6 https://www.encodeproject.org/files/ENCFF337URA/@@download/ENCFF337URA.bam mm10-minimal archived low read length insufficient read depth ENCFF352INQ bam unfiltered alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KRJ, ENCFF806TVZ 411142755 J. Michael Cherry, Stanford ead1e6a7cbe0d7b6caa908dfcc614cf9 https://www.encodeproject.org/files/ENCFF352INQ/@@download/ENCFF352INQ.bam mm10-minimal archived low read length insufficient read depth ENCFF780TFB bam alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRK, ENCFF018NEO 319511950 ENCODE Processing Pipeline 666a320423226908f400c2b18d8273bf https://www.encodeproject.org/files/ENCFF780TFB/@@download/ENCFF780TFB.bam mm10 released low read length insufficient read depth ENCFF342BIA bam alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRJ, ENCFF018NEO 283918783 ENCODE Processing Pipeline f087652c4274db1a63b6967837ca2a9a https://www.encodeproject.org/files/ENCFF342BIA/@@download/ENCFF342BIA.bam mm10 released low read length insufficient read depth ENCFF607DVT bam unfiltered alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRJ, ENCFF018NEO 411873632 ENCODE Processing Pipeline 8f209f18f19f0f1664a0ad9b1183336c https://www.encodeproject.org/files/ENCFF607DVT/@@download/ENCFF607DVT.bam mm10 released low read length insufficient read depth ENCFF250YTQ bam unfiltered alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRK, ENCFF018NEO 463194348 ENCODE Processing Pipeline a79f801b962b93e7fae9bd7b936bc704 https://www.encodeproject.org/files/ENCFF250YTQ/@@download/ENCFF250YTQ.bam mm10 released low read length insufficient read depth ENCFF002BVZ fastq reads ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1346570931 Bing Ren, UCSD 00263b85c1a1271bd8d90498ff6f1e7b SRA:SRR3653038 https://www.encodeproject.org/files/ENCFF002BVZ/@@download/ENCFF002BVZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXO/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF349DZM fastq reads ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1129979466 Bing Ren, UCSD f83ebf733d7f2a84dc38c3f99aeba3c1 SRA:SRR3653039 https://www.encodeproject.org/files/ENCFF349DZM/@@download/ENCFF349DZM.fastq.gz Illumina HiSeq 2500 /files/ENCFF550AJM/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF866UYR bam alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002BVZ, ENCFF806TVZ 1008018931 ENCODE Processing Pipeline 23f499cfa4ea35cf4d1629ff8ba78f93 https://www.encodeproject.org/files/ENCFF866UYR/@@download/ENCFF866UYR.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF008ZNY bam alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF349DZM, ENCFF806TVZ 708699051 ENCODE Processing Pipeline 5294bed36364cea913d12fed53313a3c https://www.encodeproject.org/files/ENCFF008ZNY/@@download/ENCFF008ZNY.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF799EPD bed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF008ZNY, ENCFF562EMV, ENCFF623BMA 1649828 ENCODE Processing Pipeline 8488a14551ffacb28ae3d3d48d9e1e8f https://www.encodeproject.org/files/ENCFF799EPD/@@download/ENCFF799EPD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF322VIV bed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF008ZNY, ENCFF562EMV, ENCFF623BMA, ENCFF866UYR 1089769 ENCODE Processing Pipeline 67e70e1919866117e1c16bc5b360a752 https://www.encodeproject.org/files/ENCFF322VIV/@@download/ENCFF322VIV.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF363VYD bed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF866UYR 1373203 ENCODE Processing Pipeline 17ab122c7a9c172dc860fbe8ed96e3e9 https://www.encodeproject.org/files/ENCFF363VYD/@@download/ENCFF363VYD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF931CLX bigBed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF322VIV 3315552 ENCODE Processing Pipeline 77bad8f22a7bbf6c3fda25cc2b91c91a https://www.encodeproject.org/files/ENCFF931CLX/@@download/ENCFF931CLX.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF851QSN bigBed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF363VYD 3399016 ENCODE Processing Pipeline ada96923343055ea478e528cd2af15cc https://www.encodeproject.org/files/ENCFF851QSN/@@download/ENCFF851QSN.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF196XCQ bigWig signal p-value ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF008ZNY, ENCFF562EMV, ENCFF623BMA 407066423 ENCODE Processing Pipeline c22a2f12c2b0f7c474d2aacfb66827be https://www.encodeproject.org/files/ENCFF196XCQ/@@download/ENCFF196XCQ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF359REU bigBed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF799EPD 3938072 ENCODE Processing Pipeline 16e255baedeb03f0e0a6268078640ca1 https://www.encodeproject.org/files/ENCFF359REU/@@download/ENCFF359REU.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF150BKW bigWig signal p-value ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF866UYR 398275140 ENCODE Processing Pipeline 81782bbfa12d06cd1defdaa76d04ca3a https://www.encodeproject.org/files/ENCFF150BKW/@@download/ENCFF150BKW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF979JGI bigWig fold change over control ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF562EMV, ENCFF623BMA, ENCFF866UYR 429788471 ENCODE Processing Pipeline 2f32380f95640b9fdd58f9401f537837 https://www.encodeproject.org/files/ENCFF979JGI/@@download/ENCFF979JGI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF373JCW bigWig fold change over control ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF008ZNY, ENCFF562EMV, ENCFF623BMA 365699374 ENCODE Processing Pipeline 1e7aa681da7d78baa438c40e6d9a000b https://www.encodeproject.org/files/ENCFF373JCW/@@download/ENCFF373JCW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF692IIH bigWig signal p-value ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF008ZNY, ENCFF562EMV, ENCFF623BMA, ENCFF866UYR 476997768 ENCODE Processing Pipeline e674680c55805c45c5173cd2423ba986 https://www.encodeproject.org/files/ENCFF692IIH/@@download/ENCFF692IIH.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF766INA bigWig fold change over control ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF008ZNY, ENCFF562EMV, ENCFF623BMA, ENCFF866UYR 647226897 ENCODE Processing Pipeline b49c6650142aed03120eda979a61cba5 https://www.encodeproject.org/files/ENCFF766INA/@@download/ENCFF766INA.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF857ERT bigBed narrowPeak replicated peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF612NVM 2838646 ENCODE Processing Pipeline 08d73cc84529e0e8486889028233eded https://www.encodeproject.org/files/ENCFF857ERT/@@download/ENCFF857ERT.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF612NVM bed narrowPeak replicated peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF322VIV, ENCFF363VYD, ENCFF799EPD 1204836 ENCODE Processing Pipeline 0c4c38f2e34dc6759b4885e251850ff2 https://www.encodeproject.org/files/ENCFF612NVM/@@download/ENCFF612NVM.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF767KAJ bam unfiltered alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BVZ, ENCFF018NEO 1683598160 ENCODE Processing Pipeline 09625287b45d9a2ebcff65109c824f1b https://www.encodeproject.org/files/ENCFF767KAJ/@@download/ENCFF767KAJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF242MAA bam alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BVZ, ENCFF018NEO 1007802562 ENCODE Processing Pipeline 1858a8f785a483e7ea12b3d4ba0d1dd3 https://www.encodeproject.org/files/ENCFF242MAA/@@download/ENCFF242MAA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF174XID bam unfiltered alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF349DZM 1359022710 ENCODE Processing Pipeline b35585b0a654bf45f9b191a8f07339ed https://www.encodeproject.org/files/ENCFF174XID/@@download/ENCFF174XID.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF359TVI bam alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF349DZM 708613151 ENCODE Processing Pipeline 5b5fe1056e80123919f32c0d53e6503f https://www.encodeproject.org/files/ENCFF359TVI/@@download/ENCFF359TVI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF239ZAX bed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF242MAA, ENCFF903NWQ, ENCFF995XOU 1373571 ENCODE Processing Pipeline 0a16d7d34bd00bbf7352848b6e34177e https://www.encodeproject.org/files/ENCFF239ZAX/@@download/ENCFF239ZAX.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF676WNJ bed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF359TVI, ENCFF903NWQ 914151 ENCODE Processing Pipeline 13a7838e490acd47e70874b49b681a28 https://www.encodeproject.org/files/ENCFF676WNJ/@@download/ENCFF676WNJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF100HSM bed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF242MAA, ENCFF359TVI, ENCFF903NWQ, ENCFF995XOU 1095030 ENCODE Processing Pipeline 4bf8bddb7eb2958559df48b238502cc9 https://www.encodeproject.org/files/ENCFF100HSM/@@download/ENCFF100HSM.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF486MWI bigBed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF239ZAX 3401544 ENCODE Processing Pipeline 3e20ad47e614b2ac87d51c0aa342d0c7 https://www.encodeproject.org/files/ENCFF486MWI/@@download/ENCFF486MWI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF087YIQ bigBed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF676WNJ 2855089 ENCODE Processing Pipeline 68a00e3c87c7b5cfaae5d2b33b2b7832 https://www.encodeproject.org/files/ENCFF087YIQ/@@download/ENCFF087YIQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF187FPR bigBed narrowPeak peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF100HSM 3327056 ENCODE Processing Pipeline 0ff4c98ec57beee0f75d1c20c5a73107 https://www.encodeproject.org/files/ENCFF187FPR/@@download/ENCFF187FPR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF714UDS bigWig signal p-value ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF242MAA, ENCFF903NWQ, ENCFF995XOU 372104494 ENCODE Processing Pipeline 782d679e09278439d9b8f22d52a237cd https://www.encodeproject.org/files/ENCFF714UDS/@@download/ENCFF714UDS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF209FOP bigWig signal p-value ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF359TVI, ENCFF903NWQ 226297229 ENCODE Processing Pipeline a4d4ca2d498ab5ea1c68585f1bcbb9db https://www.encodeproject.org/files/ENCFF209FOP/@@download/ENCFF209FOP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF362GUE bigWig signal p-value ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF242MAA, ENCFF359TVI, ENCFF903NWQ, ENCFF995XOU 474596955 ENCODE Processing Pipeline 1de9ec520a7c504df8210b31fa5557fe https://www.encodeproject.org/files/ENCFF362GUE/@@download/ENCFF362GUE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF931TTD bigWig fold change over control ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF242MAA, ENCFF903NWQ, ENCFF995XOU 429951322 ENCODE Processing Pipeline c25b07091b7f76261d4a019ced2802df https://www.encodeproject.org/files/ENCFF931TTD/@@download/ENCFF931TTD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF779KDK bigWig fold change over control ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF359TVI, ENCFF903NWQ 287309537 ENCODE Processing Pipeline b582a93ef036d95826d63858a498fd03 https://www.encodeproject.org/files/ENCFF779KDK/@@download/ENCFF779KDK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF011VMX bigWig fold change over control ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF242MAA, ENCFF359TVI, ENCFF903NWQ, ENCFF995XOU 644359915 ENCODE Processing Pipeline ad2d13652be75730d47ea3b48cbb8fe5 https://www.encodeproject.org/files/ENCFF011VMX/@@download/ENCFF011VMX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF834HBK bed narrowPeak replicated peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF100HSM, ENCFF239ZAX, ENCFF676WNJ 1113093 ENCODE Processing Pipeline d2bf9132822a1f05abe5c3d1536f5dad https://www.encodeproject.org/files/ENCFF834HBK/@@download/ENCFF834HBK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF883ZKZ bigBed narrowPeak replicated peaks ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF834HBK 2645739 ENCODE Processing Pipeline 9d5012c0597875744a1ec83ff60b5f68 https://www.encodeproject.org/files/ENCFF883ZKZ/@@download/ENCFF883ZKZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF071UWJ fastq reads ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 1 1 45 single-ended 719576445 Bing Ren, UCSD 9b674969d40bbc8e732c67d31606e274 SRA:SRR4235596 https://www.encodeproject.org/files/ENCFF071UWJ/@@download/ENCFF071UWJ.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF659VUB fastq reads ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 2 1 36 single-ended 779636895 Bing Ren, UCSD 41e484266afe7babb4a9b7ebd8bfe837 SRA:SRR4235595 https://www.encodeproject.org/files/ENCFF659VUB/@@download/ENCFF659VUB.fastq.gz Illumina HiSeq 2000 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF611GXU bam unfiltered alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 2 ENCFF659VUB, ENCFF806TVZ 990206247 J. Michael Cherry, Stanford 62bc1df3f805b7643c1077c627d32133 https://www.encodeproject.org/files/ENCFF611GXU/@@download/ENCFF611GXU.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF542BGS bam unfiltered alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 1 ENCFF071UWJ, ENCFF806TVZ 964296474 J. Michael Cherry, Stanford 1d9b853a380ec4347d5e0651f971b431 https://www.encodeproject.org/files/ENCFF542BGS/@@download/ENCFF542BGS.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF318EHA bam alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 2 36 ENCFF018NEO, ENCFF659VUB 450624178 ENCODE Processing Pipeline d93a4f3fbbfcc390af029b44e0adcaf4 https://www.encodeproject.org/files/ENCFF318EHA/@@download/ENCFF318EHA.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF654ZMO bam unfiltered alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 2 36 ENCFF018NEO, ENCFF659VUB 991688076 ENCODE Processing Pipeline 1f5208c0904072843a7dc2e6ddf149fd https://www.encodeproject.org/files/ENCFF654ZMO/@@download/ENCFF654ZMO.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF963ZWM bam unfiltered alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 1 36 ENCFF018NEO, ENCFF071UWJ 829136914 ENCODE Processing Pipeline 0e4c7a72925689be9b9cefc5a29c0aca https://www.encodeproject.org/files/ENCFF963ZWM/@@download/ENCFF963ZWM.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF682ICT bam alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 1 36 ENCFF018NEO, ENCFF071UWJ 538332128 ENCODE Processing Pipeline 41c7bc4e0680bd379af7819e8279072d https://www.encodeproject.org/files/ENCFF682ICT/@@download/ENCFF682ICT.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001NUB bigWig signal ENCSR000EUF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NUC 228964669 Michael Snyder, Stanford 4056b997280b27541abc367dd46c5dbd https://www.encodeproject.org/files/ENCFF001NUB/@@download/ENCFF001NUB.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NUC bam alignments ENCSR000EUF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NUK 522475665 Michael Snyder, Stanford 2211e6172e7d69dcae0dee5e46081028 https://www.encodeproject.org/files/ENCFF001NUC/@@download/ENCFF001NUC.bam mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NUK fastq reads ENCSR000EUF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1667838826 Michael Snyder, Stanford 6821267e1e67c2fe4b731a1ae451ae1b https://www.encodeproject.org/files/ENCFF001NUK/@@download/ENCFF001NUK.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking, low read depth ENCFF399IPF bam unfiltered alignments ENCSR000EUF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NUK, ENCFF018NEO 1884787248 ENCODE Processing Pipeline a39266f74273299d3a5ff483a0642d69 https://www.encodeproject.org/files/ENCFF399IPF/@@download/ENCFF399IPF.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF017EBX bam alignments ENCSR000EUF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NUK, ENCFF018NEO 900446655 ENCODE Processing Pipeline 90765d4081048ba93d242e4c11a3d9cc https://www.encodeproject.org/files/ENCFF017EBX/@@download/ENCFF017EBX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NZI bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NZN 428465013 Michael Snyder, Stanford 7e90855e98114645c240ed6b64b8fe75 https://www.encodeproject.org/files/ENCFF001NZI/@@download/ENCFF001NZI.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZJ bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NZL 494628956 Michael Snyder, Stanford 185f587bdaf041a3e6d665ff507ab911 https://www.encodeproject.org/files/ENCFF001NZJ/@@download/ENCFF001NZJ.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZK bigBed narrowPeak peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YKF 1990547 Michael Snyder, Stanford a4a4a69f2bb18d632400da5cc3a48689 https://www.encodeproject.org/files/ENCFF001NZK/@@download/ENCFF001NZK.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZL fastq reads ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 999039005 Michael Snyder, Stanford 4f3ce4fc460b29955f5b37f70dd80994 https://www.encodeproject.org/files/ENCFF001NZL/@@download/ENCFF001NZL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZN fastq reads ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 839937253 Michael Snyder, Stanford 647f1b755b68e8cddcf5ef60b7d9fffa https://www.encodeproject.org/files/ENCFF001NZN/@@download/ENCFF001NZN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NZP bigWig signal ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZI, ENCFF001NZJ 345588870 Michael Snyder, Stanford 17d95b9f3be676392133adb0d5d0ae5d https://www.encodeproject.org/files/ENCFF001NZP/@@download/ENCFF001NZP.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YKF bed narrowPeak peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NZI, ENCFF001NZJ 763472 Michael Snyder, Stanford 64646ec6119c9a4f3c4da1f6a988d381 https://www.encodeproject.org/files/ENCFF001YKF/@@download/ENCFF001YKF.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF224SYY bam unfiltered alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NZN, ENCFF018NEO 908460548 ENCODE Processing Pipeline e0d89e99d6b88f6d1e79b0c5faa8bfff https://www.encodeproject.org/files/ENCFF224SYY/@@download/ENCFF224SYY.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF361BTU bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NZL, ENCFF018NEO 741984974 ENCODE Processing Pipeline a301f91dd208f3c7905a483578c19123 https://www.encodeproject.org/files/ENCFF361BTU/@@download/ENCFF361BTU.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF826WXA bam unfiltered alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NZL, ENCFF018NEO 1099949203 ENCODE Processing Pipeline 01ddcd27e6a13ecb1c925165b6258e6f https://www.encodeproject.org/files/ENCFF826WXA/@@download/ENCFF826WXA.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF844BWV bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NZN, ENCFF018NEO 617496155 ENCODE Processing Pipeline 6807b721b98c9ed72d8c4779838bf40f https://www.encodeproject.org/files/ENCFF844BWV/@@download/ENCFF844BWV.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF113FFK bigWig signal p-value ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF844BWV 323070667 ENCODE Processing Pipeline 0852ca925b81ebbd88a9cbd95e282095 https://www.encodeproject.org/files/ENCFF113FFK/@@download/ENCFF113FFK.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF903IQU bigWig signal p-value ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF361BTU 338982505 ENCODE Processing Pipeline 113032d7222fdc90eb41c91b02294c3d https://www.encodeproject.org/files/ENCFF903IQU/@@download/ENCFF903IQU.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF398PAN bigWig signal p-value ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF361BTU, ENCFF844BWV 329037585 ENCODE Processing Pipeline 15d1489d1a25d03872d1736bb9507fff https://www.encodeproject.org/files/ENCFF398PAN/@@download/ENCFF398PAN.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF826KPV bigWig fold change over control ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF361BTU 335726904 ENCODE Processing Pipeline 7b9839c3fbb48b50457abd264cf038f5 https://www.encodeproject.org/files/ENCFF826KPV/@@download/ENCFF826KPV.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF034BBD bigWig fold change over control ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF361BTU, ENCFF844BWV 516652739 ENCODE Processing Pipeline db12451b4cb076d22dc6664252331ca2 https://www.encodeproject.org/files/ENCFF034BBD/@@download/ENCFF034BBD.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF029XTX bed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF361BTU 4718539 ENCODE Processing Pipeline 14130ff65caa67e6568e4654434e6da4 https://www.encodeproject.org/files/ENCFF029XTX/@@download/ENCFF029XTX.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF791OAC bigWig fold change over control ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF844BWV 291038397 ENCODE Processing Pipeline fdbee547a4414545cc2662e9f26a2570 https://www.encodeproject.org/files/ENCFF791OAC/@@download/ENCFF791OAC.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF706CPY bigBed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF029XTX 10523498 ENCODE Processing Pipeline 5cc1a0a5c842a0ea85bc3c4dfa3c333d https://www.encodeproject.org/files/ENCFF706CPY/@@download/ENCFF706CPY.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF325YXC bed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF844BWV 4973225 ENCODE Processing Pipeline a84c69f5ef862626d080bfd265b9ae5a https://www.encodeproject.org/files/ENCFF325YXC/@@download/ENCFF325YXC.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF952MLM bed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF171OVT, ENCFF361BTU, ENCFF844BWV 5654294 ENCODE Processing Pipeline b8a5868e1dd19b09d442f78a248840b3 https://www.encodeproject.org/files/ENCFF952MLM/@@download/ENCFF952MLM.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF701HMK bed narrowPeak conservative idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF029XTX, ENCFF325YXC, ENCFF547MET, ENCFF952MLM 654126 ENCODE Processing Pipeline de26a7e65bfc966b87e1fb12547c5671 https://www.encodeproject.org/files/ENCFF701HMK/@@download/ENCFF701HMK.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF772AET bigBed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF952MLM 11126307 ENCODE Processing Pipeline d9bf98acc254c05b70109e47fc2ee69e https://www.encodeproject.org/files/ENCFF772AET/@@download/ENCFF772AET.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF119CZQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF029XTX, ENCFF325YXC, ENCFF547MET, ENCFF952MLM 676618 ENCODE Processing Pipeline 58a5d8389217a038e385c251d6a59ae9 https://www.encodeproject.org/files/ENCFF119CZQ/@@download/ENCFF119CZQ.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF651ESP bigBed narrowPeak peaks and background as input for IDR ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF325YXC 10611486 ENCODE Processing Pipeline 7d113f9e98991f27c4802c2ae6424cf2 https://www.encodeproject.org/files/ENCFF651ESP/@@download/ENCFF651ESP.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF714GUX bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF701HMK 1130993 ENCODE Processing Pipeline 438cfc8831651540f670db4e70072d22 https://www.encodeproject.org/files/ENCFF714GUX/@@download/ENCFF714GUX.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF101PTF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF119CZQ 1159779 ENCODE Processing Pipeline a3509c03f2d444b72dc1f415a8f8436f https://www.encodeproject.org/files/ENCFF101PTF/@@download/ENCFF101PTF.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001KYD bam alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KYN 1681277011 Bing Ren, UCSD 19a21c28bbf072b4acc16d3f4853affb https://www.encodeproject.org/files/ENCFF001KYD/@@download/ENCFF001KYD.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KYE bigBed broadPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XZN 2111444 Bing Ren, UCSD 3f5ab2b0e627e8e05591d255adc48621 https://www.encodeproject.org/files/ENCFF001KYE/@@download/ENCFF001KYE.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KYF bam alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KYP 1655483184 Bing Ren, UCSD 78463d3e219186afb1ca1e829b758ec6 https://www.encodeproject.org/files/ENCFF001KYF/@@download/ENCFF001KYF.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KYI bigWig signal ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KYD, ENCFF001KYF 67866730 Bing Ren, UCSD 3b21195142f0bc289e1c2fc09320a14a https://www.encodeproject.org/files/ENCFF001KYI/@@download/ENCFF001KYI.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KYN fastq reads ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 1678571034 Bing Ren, UCSD e4ac140bf0903df2675965214a521957 https://www.encodeproject.org/files/ENCFF001KYN/@@download/ENCFF001KYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KYP fastq reads ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1596134244 Bing Ren, UCSD 4ee5876856f8a6f31fcfadfcded1c48f https://www.encodeproject.org/files/ENCFF001KYP/@@download/ENCFF001KYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001XZN bed broadPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KYD, ENCFF001KYF 1416993 Bing Ren, UCSD 18671306bfbabf85ed37d8d060ed6d36 https://www.encodeproject.org/files/ENCFF001XZN/@@download/ENCFF001XZN.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF848KLM bam unfiltered alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KYN, ENCFF018NEO 1802276217 ENCODE Processing Pipeline 7a34bb258adfc190c034b1843a8e5591 https://www.encodeproject.org/files/ENCFF848KLM/@@download/ENCFF848KLM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF046XIG bam unfiltered alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KYP, ENCFF018NEO 1805026490 ENCODE Processing Pipeline b8f20422aaa2faa90957ab0ae46405fe https://www.encodeproject.org/files/ENCFF046XIG/@@download/ENCFF046XIG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF536PUP bam alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KYN, ENCFF018NEO 842808454 ENCODE Processing Pipeline 73f1c19887e2e989ebf2295de8235d83 https://www.encodeproject.org/files/ENCFF536PUP/@@download/ENCFF536PUP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF903YZZ bam alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KYP, ENCFF018NEO 1084773196 ENCODE Processing Pipeline ddcaacf9ad5ca06cc4e0e3254d0c3809 https://www.encodeproject.org/files/ENCFF903YZZ/@@download/ENCFF903YZZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF900OZD bed narrowPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF283CTW, ENCFF347BCY, ENCFF536PUP 3329821 ENCODE Processing Pipeline 11f3a553419569d7c3921949ee3e7e7a https://www.encodeproject.org/files/ENCFF900OZD/@@download/ENCFF900OZD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF265LHC bigBed narrowPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF900OZD 7891704 ENCODE Processing Pipeline f8464a59490cb0b5559aac9675c3ffde https://www.encodeproject.org/files/ENCFF265LHC/@@download/ENCFF265LHC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF608AMD bed narrowPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF347BCY, ENCFF903YZZ 734225 ENCODE Processing Pipeline 5d0f9b859175f25dee1f54e20ddb2f06 https://www.encodeproject.org/files/ENCFF608AMD/@@download/ENCFF608AMD.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF730KFG bed narrowPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF536PUP, ENCFF903YZZ 2221710 ENCODE Processing Pipeline b7e810b62cff115031a482f97d796a66 https://www.encodeproject.org/files/ENCFF730KFG/@@download/ENCFF730KFG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF749GYJ bigBed narrowPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF730KFG 5282500 ENCODE Processing Pipeline db4664c85f15673b5ed43cba4c5b17bb https://www.encodeproject.org/files/ENCFF749GYJ/@@download/ENCFF749GYJ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF604WGG bigBed narrowPeak peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF608AMD 1676857 ENCODE Processing Pipeline e2293a212cd3d21f0bbd96341a7a9fcb https://www.encodeproject.org/files/ENCFF604WGG/@@download/ENCFF604WGG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF458FVE bigWig signal p-value ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF283CTW, ENCFF347BCY, ENCFF536PUP 405192962 ENCODE Processing Pipeline 1666f87bc61f719bf5e84eb82dffaaef https://www.encodeproject.org/files/ENCFF458FVE/@@download/ENCFF458FVE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF799QEB bigWig signal p-value ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF536PUP, ENCFF903YZZ 428148315 ENCODE Processing Pipeline cc580ef462deb4c7ab683b507dc473be https://www.encodeproject.org/files/ENCFF799QEB/@@download/ENCFF799QEB.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF459DEN bigWig signal p-value ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF347BCY, ENCFF903YZZ 215507120 ENCODE Processing Pipeline 40a6283bfc48d043e60b6f59b3a1fbfa https://www.encodeproject.org/files/ENCFF459DEN/@@download/ENCFF459DEN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF075PCF bigWig fold change over control ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF283CTW, ENCFF347BCY, ENCFF536PUP 338676966 ENCODE Processing Pipeline 3729a9e0928c509230a22605d00fe837 https://www.encodeproject.org/files/ENCFF075PCF/@@download/ENCFF075PCF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF416LOK bigWig fold change over control ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF347BCY, ENCFF903YZZ 333834804 ENCODE Processing Pipeline 981b3a0342ae6494b099bece44b9f97d https://www.encodeproject.org/files/ENCFF416LOK/@@download/ENCFF416LOK.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF287DIJ bigWig fold change over control ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF536PUP, ENCFF903YZZ 643203456 ENCODE Processing Pipeline c4e8728c52908075df68944bf1a27d7f https://www.encodeproject.org/files/ENCFF287DIJ/@@download/ENCFF287DIJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF853BYO bed narrowPeak replicated peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF608AMD, ENCFF730KFG, ENCFF900OZD 1754378 ENCODE Processing Pipeline 628f8175d826c82aa0cb25956147ec82 https://www.encodeproject.org/files/ENCFF853BYO/@@download/ENCFF853BYO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF303SAG bigBed narrowPeak replicated peaks ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF853BYO 3479362 ENCODE Processing Pipeline 1d75de186a4618415de3778b34f2fae1 https://www.encodeproject.org/files/ENCFF303SAG/@@download/ENCFF303SAG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF002AGP fastq reads ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1362607677 Bing Ren, UCSD d555f1913478f8a331b09c3d3ccfc736 SRA:SRR3652014 https://www.encodeproject.org/files/ENCFF002AGP/@@download/ENCFF002AGP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQE/ released low read length, mild to moderate bottlenecking, inconsistent control read length insufficient read depth, control insufficient read depth ENCFF002AGR fastq reads ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1352881716 Bing Ren, UCSD 7f5ca17edbed67f583223005033b0daf SRA:SRR3652013 https://www.encodeproject.org/files/ENCFF002AGR/@@download/ENCFF002AGR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQC/ released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF632GJH bam alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGP, ENCFF806TVZ 951888910 ENCODE Processing Pipeline 921e260e836cf6e150c02e0c8fac0922 https://www.encodeproject.org/files/ENCFF632GJH/@@download/ENCFF632GJH.bam mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF923CNZ bam alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGR, ENCFF806TVZ 922335144 ENCODE Processing Pipeline 22d6f2cc5ef64331ddb331c9fe951f01 https://www.encodeproject.org/files/ENCFF923CNZ/@@download/ENCFF923CNZ.bam mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF370YEI bed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF632GJH, ENCFF999TAG 807836 ENCODE Processing Pipeline a6c141c67e2591973058791b225e9a67 https://www.encodeproject.org/files/ENCFF370YEI/@@download/ENCFF370YEI.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF149ATD bigBed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF804LLC 2459664 ENCODE Processing Pipeline 5f830eaf6c645f825e0fe0392b684c48 https://www.encodeproject.org/files/ENCFF149ATD/@@download/ENCFF149ATD.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF804LLC bed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF923CNZ, ENCFF999TAG 1131155 ENCODE Processing Pipeline 15241f4c36b18aa40045a082c9ca94ae https://www.encodeproject.org/files/ENCFF804LLC/@@download/ENCFF804LLC.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF311QYC bigBed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF370YEI 1911873 ENCODE Processing Pipeline e5c088e707b578e8e65be7c82857b619 https://www.encodeproject.org/files/ENCFF311QYC/@@download/ENCFF311QYC.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF876DPD bed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF632GJH, ENCFF923CNZ, ENCFF999TAG 733017 ENCODE Processing Pipeline 6c4ae6554be2ab7a6f6e6e5fe109eead https://www.encodeproject.org/files/ENCFF876DPD/@@download/ENCFF876DPD.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF873BOM bigBed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF876DPD 1572046 ENCODE Processing Pipeline 5f940de6270b301518886c0a5a8e0886 https://www.encodeproject.org/files/ENCFF873BOM/@@download/ENCFF873BOM.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF074SWU bigWig signal p-value ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF632GJH, ENCFF999TAG 403640086 ENCODE Processing Pipeline b2ef48700f447fcbb55b4c69b5d317e9 https://www.encodeproject.org/files/ENCFF074SWU/@@download/ENCFF074SWU.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF671MZX bigWig signal p-value ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF923CNZ, ENCFF999TAG 464868283 ENCODE Processing Pipeline 47dd0b2e237364d92778f9924aa26073 https://www.encodeproject.org/files/ENCFF671MZX/@@download/ENCFF671MZX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF327OTH bigWig signal p-value ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF632GJH, ENCFF923CNZ, ENCFF999TAG 680064411 ENCODE Processing Pipeline 298741e91874ce4f58dfe90d026f195a https://www.encodeproject.org/files/ENCFF327OTH/@@download/ENCFF327OTH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF677JVR bigWig fold change over control ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF632GJH, ENCFF999TAG 457359260 ENCODE Processing Pipeline f5f1c024789b54309b3675052f5fee24 https://www.encodeproject.org/files/ENCFF677JVR/@@download/ENCFF677JVR.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF551FEV bigWig fold change over control ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF387UYW, ENCFF923CNZ, ENCFF999TAG 452336187 ENCODE Processing Pipeline 887df0d0232eb58cad4343482d709f96 https://www.encodeproject.org/files/ENCFF551FEV/@@download/ENCFF551FEV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF102LTH bigWig fold change over control ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF387UYW, ENCFF632GJH, ENCFF923CNZ, ENCFF999TAG 714259153 ENCODE Processing Pipeline 486f1c8676927f1c8c7bdcc92ea4adbe https://www.encodeproject.org/files/ENCFF102LTH/@@download/ENCFF102LTH.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF233VZF bed narrowPeak replicated peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF370YEI, ENCFF804LLC, ENCFF876DPD 449808 ENCODE Processing Pipeline e04e9913b19f358c33cddca97fa1583f https://www.encodeproject.org/files/ENCFF233VZF/@@download/ENCFF233VZF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF818BTV bigBed narrowPeak replicated peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF233VZF 1102693 ENCODE Processing Pipeline 2da193ea98da0c2280d2bcd1908dc6f7 https://www.encodeproject.org/files/ENCFF818BTV/@@download/ENCFF818BTV.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF811JZL bam unfiltered alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGR, ENCFF018NEO 1456722552 ENCODE Processing Pipeline 4474f0a4762331c95d94c6197c61c2cd https://www.encodeproject.org/files/ENCFF811JZL/@@download/ENCFF811JZL.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF037BFN bam unfiltered alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGP, ENCFF018NEO 1476271765 ENCODE Processing Pipeline 58fde2776145c09728d70cd55a01a8c0 https://www.encodeproject.org/files/ENCFF037BFN/@@download/ENCFF037BFN.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF647QQP bam alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGP, ENCFF018NEO 951608177 ENCODE Processing Pipeline 1b88e4e12f5c3a8fe353ae474552e756 https://www.encodeproject.org/files/ENCFF647QQP/@@download/ENCFF647QQP.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF148HWT bam alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGR, ENCFF018NEO 922150416 ENCODE Processing Pipeline 4ff0b7fd611d8258d42bb6dd9fd78234 https://www.encodeproject.org/files/ENCFF148HWT/@@download/ENCFF148HWT.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF706YGH bed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF148HWT, ENCFF446WFN, ENCFF647QQP 702114 ENCODE Processing Pipeline f234e38a4112d520344b8f45b4abac65 https://www.encodeproject.org/files/ENCFF706YGH/@@download/ENCFF706YGH.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF145PXS bigBed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF706YGH 1519747 ENCODE Processing Pipeline 5aa815fc0a51cb9faacfd5a11223188e https://www.encodeproject.org/files/ENCFF145PXS/@@download/ENCFF145PXS.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF416IVG bed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF647QQP 820019 ENCODE Processing Pipeline f30d7f09768b908b57f6c9592b1b7612 https://www.encodeproject.org/files/ENCFF416IVG/@@download/ENCFF416IVG.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF711ECU bigBed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF416IVG 1953464 ENCODE Processing Pipeline c9895a2260f11f567251e981c877821b https://www.encodeproject.org/files/ENCFF711ECU/@@download/ENCFF711ECU.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF840CEE bed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF148HWT, ENCFF446WFN 983307 ENCODE Processing Pipeline d793a8d4869817b1a6f174857a294017 https://www.encodeproject.org/files/ENCFF840CEE/@@download/ENCFF840CEE.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF192FUY bigBed narrowPeak peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF840CEE 2149451 ENCODE Processing Pipeline 32f30dbd46523451026fa2cc4ee85a54 https://www.encodeproject.org/files/ENCFF192FUY/@@download/ENCFF192FUY.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF234ZNF bigWig signal p-value ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF647QQP 465690479 ENCODE Processing Pipeline 94b0a340962d4da12bc411b5e1e7c4da https://www.encodeproject.org/files/ENCFF234ZNF/@@download/ENCFF234ZNF.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF635APP bigWig signal p-value ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF148HWT, ENCFF446WFN, ENCFF647QQP 664865358 ENCODE Processing Pipeline 3be6844e30df0f177894fbea41aa301d https://www.encodeproject.org/files/ENCFF635APP/@@download/ENCFF635APP.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF737DXA bigWig signal p-value ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF148HWT, ENCFF446WFN 434402666 ENCODE Processing Pipeline e3066f57dd6b120a3c2bcd66565c4a6b https://www.encodeproject.org/files/ENCFF737DXA/@@download/ENCFF737DXA.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF678ZJX bigWig fold change over control ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF647QQP 457098145 ENCODE Processing Pipeline 0b93e1410bd9af223d715cdccea8f659 https://www.encodeproject.org/files/ENCFF678ZJX/@@download/ENCFF678ZJX.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF102ISD bigWig fold change over control ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF148HWT, ENCFF446WFN 440967903 ENCODE Processing Pipeline b8d312817582f9df34ade7bdea1ed578 https://www.encodeproject.org/files/ENCFF102ISD/@@download/ENCFF102ISD.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF324UGW bigWig fold change over control ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF148HWT, ENCFF446WFN, ENCFF647QQP 717785707 ENCODE Processing Pipeline 7cd18de066cc2d238064e1369a685fd9 https://www.encodeproject.org/files/ENCFF324UGW/@@download/ENCFF324UGW.bigWig mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF018TFG bigBed narrowPeak replicated peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF201LJE 1037009 ENCODE Processing Pipeline 7d31e3a9a60c1092a0497ed4adcfbb59 https://www.encodeproject.org/files/ENCFF018TFG/@@download/ENCFF018TFG.bigBed mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF201LJE bed narrowPeak replicated peaks ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF416IVG, ENCFF706YGH, ENCFF840CEE 425607 ENCODE Processing Pipeline 65ca962f441384f55c0552095ecb987e https://www.encodeproject.org/files/ENCFF201LJE/@@download/ENCFF201LJE.bed.gz mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KDZ bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KEF 652366659 Bing Ren, UCSD 4c637529b22e6f2c4c2c01317751ce2a https://www.encodeproject.org/files/ENCFF001KDZ/@@download/ENCFF001KDZ.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KEA bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEG 348815224 Bing Ren, UCSD 7a59e574aa89346fd241699698cc1aac https://www.encodeproject.org/files/ENCFF001KEA/@@download/ENCFF001KEA.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KEB bigBed broadPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XWT 1693721 Bing Ren, UCSD 22276d3110fec3b6e9e244d8c92c0a95 https://www.encodeproject.org/files/ENCFF001KEB/@@download/ENCFF001KEB.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KEF fastq reads ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 675305765 Bing Ren, UCSD fac6956c990046741717d38aad81902e https://www.encodeproject.org/files/ENCFF001KEF/@@download/ENCFF001KEF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length insufficient read depth, control insufficient read depth ENCFF001KEG fasta reads ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 232462524 Bing Ren, UCSD f1bde3f8362ef347b583c7ae149eec8f https://www.encodeproject.org/files/ENCFF001KEG/@@download/ENCFF001KEG.fasta.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length insufficient read depth, control insufficient read depth ENCFF001KEH bigWig signal ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KDZ, ENCFF001KEA 53661280 Bing Ren, UCSD 7f5a86a7352e7d4283f1fbac2bf5f372 https://www.encodeproject.org/files/ENCFF001KEH/@@download/ENCFF001KEH.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001XWT bed broadPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KDZ, ENCFF001KEA 880612 Bing Ren, UCSD 3d2785cea4cbce39aac2b2fbe62e9f4c https://www.encodeproject.org/files/ENCFF001XWT/@@download/ENCFF001XWT.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF268CBE bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KEF, ENCFF806TVZ 568206071 ENCODE Processing Pipeline 79f814ff7a1051aeb4013d1af1de1c90 https://www.encodeproject.org/files/ENCFF268CBE/@@download/ENCFF268CBE.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF899OKI bigBed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF648CLB 5500535 ENCODE Processing Pipeline 76cf8b0c2fd6e9aecb5cf8ceac54f172 https://www.encodeproject.org/files/ENCFF899OKI/@@download/ENCFF899OKI.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF229QLE bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEG, ENCFF806TVZ 284224004 ENCODE Processing Pipeline 7e4b08ed6e171d011fb5fbc7d03aacbe https://www.encodeproject.org/files/ENCFF229QLE/@@download/ENCFF229QLE.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF245AZZ bed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF229QLE, ENCFF343KWM, ENCFF749CPB 2029360 ENCODE Processing Pipeline ad6975440e7d2e71bcadc885f8896a7c https://www.encodeproject.org/files/ENCFF245AZZ/@@download/ENCFF245AZZ.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF648CLB bed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF229QLE, ENCFF268CBE, ENCFF343KWM, ENCFF749CPB 2310005 ENCODE Processing Pipeline 69613293acf5224f204b666cac80d4e1 https://www.encodeproject.org/files/ENCFF648CLB/@@download/ENCFF648CLB.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF652QTF bam unfiltered alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KEG, ENCFF806TVZ 394960922 ENCODE Processing Pipeline 755050b91ad0d399f43843aa80577f0c https://www.encodeproject.org/files/ENCFF652QTF/@@download/ENCFF652QTF.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF745KME bigBed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF235YBC 5616231 ENCODE Processing Pipeline cc74ead990d5c8e211451652eb0c73ff https://www.encodeproject.org/files/ENCFF745KME/@@download/ENCFF745KME.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF393LBV bigBed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF245AZZ 4992849 ENCODE Processing Pipeline 3d1f94a6ff2ba1e887624530c260ed68 https://www.encodeproject.org/files/ENCFF393LBV/@@download/ENCFF393LBV.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF216GPI bigWig fold change over control ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF268CBE, ENCFF343KWM, ENCFF749CPB 299025179 ENCODE Processing Pipeline 1c49e0b8a546c48d8e8513ed10d5cf23 https://www.encodeproject.org/files/ENCFF216GPI/@@download/ENCFF216GPI.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF041WPE bigBed narrowPeak replicated peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF521BJV 3522627 ENCODE Processing Pipeline 36d72cb8571a487d9fe98c6020d2058c https://www.encodeproject.org/files/ENCFF041WPE/@@download/ENCFF041WPE.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF609MDW bigWig signal p-value ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF229QLE, ENCFF343KWM, ENCFF749CPB 340271723 ENCODE Processing Pipeline 6e3cd665b68d0931be7750440bda48d9 https://www.encodeproject.org/files/ENCFF609MDW/@@download/ENCFF609MDW.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF521BJV bed narrowPeak replicated peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF235YBC, ENCFF245AZZ, ENCFF648CLB 1872658 ENCODE Processing Pipeline 3bf1312b24b1e51ab069df7a80c7e3f9 https://www.encodeproject.org/files/ENCFF521BJV/@@download/ENCFF521BJV.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF838EUE bam unfiltered alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KEF, ENCFF806TVZ 775099016 ENCODE Processing Pipeline 86dd996422d0a85ff2db37f18c12c5cb https://www.encodeproject.org/files/ENCFF838EUE/@@download/ENCFF838EUE.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF235YBC bed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF268CBE, ENCFF343KWM, ENCFF749CPB 2310544 ENCODE Processing Pipeline d9ecb167e58b5057b2283bc670320790 https://www.encodeproject.org/files/ENCFF235YBC/@@download/ENCFF235YBC.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF266YVD bigWig fold change over control ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF229QLE, ENCFF343KWM, ENCFF749CPB 271358844 ENCODE Processing Pipeline b7cb1aa685b52e67a8868837b50ffe88 https://www.encodeproject.org/files/ENCFF266YVD/@@download/ENCFF266YVD.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF581FYJ bigWig signal p-value ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF229QLE, ENCFF268CBE, ENCFF343KWM, ENCFF749CPB 494215503 ENCODE Processing Pipeline f87a84932bfa0137e517301d89ab9a9d https://www.encodeproject.org/files/ENCFF581FYJ/@@download/ENCFF581FYJ.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF739PMW bigWig fold change over control ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF229QLE, ENCFF268CBE, ENCFF343KWM, ENCFF749CPB 455360944 ENCODE Processing Pipeline c5366caa395a0681e2d71fea33b99ef6 https://www.encodeproject.org/files/ENCFF739PMW/@@download/ENCFF739PMW.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF348HPD bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEG, ENCFF018NEO 284128022 ENCODE Processing Pipeline 29a10b901cf26a554f6cecfae0f6c656 https://www.encodeproject.org/files/ENCFF348HPD/@@download/ENCFF348HPD.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF175OAI bigWig signal p-value ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF268CBE, ENCFF343KWM, ENCFF749CPB 341561725 ENCODE Processing Pipeline 6fbe0a26b5a2f73a26aa9eb31c8c402d https://www.encodeproject.org/files/ENCFF175OAI/@@download/ENCFF175OAI.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF257BZI bam unfiltered alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KEF, ENCFF018NEO 775468066 ENCODE Processing Pipeline 666684a2da478704659f463985bddbf5 https://www.encodeproject.org/files/ENCFF257BZI/@@download/ENCFF257BZI.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF121EWQ bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KEF, ENCFF018NEO 568019995 ENCODE Processing Pipeline b5b229470ca255eeef4561cd6c52882f https://www.encodeproject.org/files/ENCFF121EWQ/@@download/ENCFF121EWQ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF618FWQ bam unfiltered alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEG, ENCFF018NEO 395262865 ENCODE Processing Pipeline d763d15e04dfd4f1725f7d40258708b5 https://www.encodeproject.org/files/ENCFF618FWQ/@@download/ENCFF618FWQ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF824AFZ bed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF121EWQ, ENCFF348HPD, ENCFF439WCI, ENCFF683TKC 2309558 ENCODE Processing Pipeline ea2855713f94b73084371347f2a41e6f https://www.encodeproject.org/files/ENCFF824AFZ/@@download/ENCFF824AFZ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF327HFM bigWig fold change over control ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF121EWQ, ENCFF439WCI, ENCFF683TKC 298973458 ENCODE Processing Pipeline 9417dc38e096a0f8ae13c740bcaa01d2 https://www.encodeproject.org/files/ENCFF327HFM/@@download/ENCFF327HFM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF718KBQ bed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF121EWQ, ENCFF439WCI, ENCFF683TKC 2310764 ENCODE Processing Pipeline dc355cd8115710152ba049429b0f6bd1 https://www.encodeproject.org/files/ENCFF718KBQ/@@download/ENCFF718KBQ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF188XEE bed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF348HPD, ENCFF439WCI, ENCFF683TKC 2029309 ENCODE Processing Pipeline 60ee7cd09239f10d0c4a53bf4157ccbc https://www.encodeproject.org/files/ENCFF188XEE/@@download/ENCFF188XEE.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF077WAE bigBed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF718KBQ 5616355 ENCODE Processing Pipeline d4973ab4ce2f6bdbeee0bea827182534 https://www.encodeproject.org/files/ENCFF077WAE/@@download/ENCFF077WAE.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF368PYO bigWig signal p-value ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF121EWQ, ENCFF439WCI, ENCFF683TKC 363785970 ENCODE Processing Pipeline 3c854454228b24d3df03b6d70d872590 https://www.encodeproject.org/files/ENCFF368PYO/@@download/ENCFF368PYO.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF975CFO bigWig fold change over control ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF348HPD, ENCFF439WCI, ENCFF683TKC 268728621 ENCODE Processing Pipeline 79b5d77ccd5b139b1bace36c8020d202 https://www.encodeproject.org/files/ENCFF975CFO/@@download/ENCFF975CFO.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF187LHP bigBed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF188XEE 4993057 ENCODE Processing Pipeline a531db474f91ec1c9affaa6da29f7c85 https://www.encodeproject.org/files/ENCFF187LHP/@@download/ENCFF187LHP.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF940JRY bigWig signal p-value ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF348HPD, ENCFF439WCI, ENCFF683TKC 370593759 ENCODE Processing Pipeline 7117685093b6488e563e3ade305e87aa https://www.encodeproject.org/files/ENCFF940JRY/@@download/ENCFF940JRY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF222KBU bigBed narrowPeak replicated peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF333IJH 3513695 ENCODE Processing Pipeline 162825416901e81f30076fb853953cb8 https://www.encodeproject.org/files/ENCFF222KBU/@@download/ENCFF222KBU.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF016YZA bigWig signal p-value ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF121EWQ, ENCFF348HPD, ENCFF439WCI, ENCFF683TKC 494215398 ENCODE Processing Pipeline 6006e83ea84c0a8af0f68e478a5ab900 https://www.encodeproject.org/files/ENCFF016YZA/@@download/ENCFF016YZA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF078HJX bigBed narrowPeak peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF824AFZ 5500460 ENCODE Processing Pipeline 6476339e5758b624f993ead345175010 https://www.encodeproject.org/files/ENCFF078HJX/@@download/ENCFF078HJX.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF295HDA bigWig fold change over control ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF121EWQ, ENCFF348HPD, ENCFF439WCI, ENCFF683TKC 455313700 ENCODE Processing Pipeline afef2f0cdd595a5afcc1047ea75f4297 https://www.encodeproject.org/files/ENCFF295HDA/@@download/ENCFF295HDA.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF333IJH bed narrowPeak replicated peaks ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF188XEE, ENCFF718KBQ, ENCFF824AFZ 1867453 ENCODE Processing Pipeline 8446d3c928f9c590cb77503313383e23 https://www.encodeproject.org/files/ENCFF333IJH/@@download/ENCFF333IJH.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001NKB bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NKM 456274887 Michael Snyder, Stanford 007116fc48bb16a8268a4bf2a5445957 https://www.encodeproject.org/files/ENCFF001NKB/@@download/ENCFF001NKB.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NKC bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NKV 481051798 Michael Snyder, Stanford 725cac95edccd80ae6d254d6374ab002 https://www.encodeproject.org/files/ENCFF001NKC/@@download/ENCFF001NKC.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NKD bigBed narrowPeak peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIK 1715288 Michael Snyder, Stanford d30b8036fcd3c68f2ece6a106933752c https://www.encodeproject.org/files/ENCFF001NKD/@@download/ENCFF001NKD.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NKG bigWig signal ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKB, ENCFF001NKC 320423853 Michael Snyder, Stanford 2d8cd9459afffb99bb79cb6db4d84bba https://www.encodeproject.org/files/ENCFF001NKG/@@download/ENCFF001NKG.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NKM fastq reads ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 770143593 Michael Snyder, Stanford f93cdc73a6cb36d4a93e6f791c4411de https://www.encodeproject.org/files/ENCFF001NKM/@@download/ENCFF001NKM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001NKV fastq reads ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 864060184 Michael Snyder, Stanford bb24d0316bfc106a93e2f4e66b2e4483 https://www.encodeproject.org/files/ENCFF001NKV/@@download/ENCFF001NKV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, inconsistent target of control experiment, low read depth ENCFF001YIK bed narrowPeak peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NKB, ENCFF001NKC 806248 Michael Snyder, Stanford 7f327f7124450f76fb67b3530282802a https://www.encodeproject.org/files/ENCFF001YIK/@@download/ENCFF001YIK.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF555ELF bam unfiltered alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKV, ENCFF018NEO 985573230 ENCODE Processing Pipeline dbd26147e0ffe20996220b4ad349ff27 https://www.encodeproject.org/files/ENCFF555ELF/@@download/ENCFF555ELF.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF735JLO bam unfiltered alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKM, ENCFF018NEO 886087277 ENCODE Processing Pipeline e3e43d149510c13891c392f06200d17c https://www.encodeproject.org/files/ENCFF735JLO/@@download/ENCFF735JLO.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF846SWR bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKV, ENCFF018NEO 732445194 ENCODE Processing Pipeline 020c7886ae80dedc0f14303ee1370e76 https://www.encodeproject.org/files/ENCFF846SWR/@@download/ENCFF846SWR.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF838XIQ bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKM, ENCFF018NEO 655983259 ENCODE Processing Pipeline b97459f68295b10d756f29af779e841a https://www.encodeproject.org/files/ENCFF838XIQ/@@download/ENCFF838XIQ.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF127AIL bigWig signal p-value ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF838XIQ 229743094 ENCODE Processing Pipeline d12f77d6e765657edc8099a3453877e3 https://www.encodeproject.org/files/ENCFF127AIL/@@download/ENCFF127AIL.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF727KQJ bigWig signal p-value ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF846SWR 235554277 ENCODE Processing Pipeline dd930f5d41359b9794ed4647cda500f7 https://www.encodeproject.org/files/ENCFF727KQJ/@@download/ENCFF727KQJ.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF584CJT bigWig fold change over control ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF838XIQ 248609592 ENCODE Processing Pipeline 0cf2619c59aa00e814591435e2efaa3b https://www.encodeproject.org/files/ENCFF584CJT/@@download/ENCFF584CJT.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF030XCC bigWig signal p-value ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF838XIQ, ENCFF846SWR 217103879 ENCODE Processing Pipeline 599e4a2e0afa272388d4463e21448df9 https://www.encodeproject.org/files/ENCFF030XCC/@@download/ENCFF030XCC.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF055BSE bigWig fold change over control ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF846SWR 261252457 ENCODE Processing Pipeline 1d03a80793b955a3a342a46b859f812f https://www.encodeproject.org/files/ENCFF055BSE/@@download/ENCFF055BSE.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF630JDA bigWig fold change over control ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF838XIQ, ENCFF846SWR 446245687 ENCODE Processing Pipeline b9922445233eb0e66c4051c409519176 https://www.encodeproject.org/files/ENCFF630JDA/@@download/ENCFF630JDA.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF048NGW bed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF838XIQ 7158275 ENCODE Processing Pipeline 569a47db6e61847ac4a4281ff6c4b6b5 https://www.encodeproject.org/files/ENCFF048NGW/@@download/ENCFF048NGW.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF250LEC bed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF846SWR 7098239 ENCODE Processing Pipeline fa4b75392eb384300093eeb5016877c6 https://www.encodeproject.org/files/ENCFF250LEC/@@download/ENCFF250LEC.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF351DDA bed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF838XIQ, ENCFF846SWR 7285112 ENCODE Processing Pipeline 7e7755a13e09529037355d86a0b18592 https://www.encodeproject.org/files/ENCFF351DDA/@@download/ENCFF351DDA.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF691VAV bigBed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF048NGW 11060373 ENCODE Processing Pipeline 77e5ead6b8a10c7ad3c853f8f11d7130 https://www.encodeproject.org/files/ENCFF691VAV/@@download/ENCFF691VAV.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF780JWE bed narrowPeak optimal idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF048NGW, ENCFF250LEC, ENCFF351DDA, ENCFF547MET 277110 ENCODE Processing Pipeline c68043cc17f592eca0ec0a6e3aab0f47 https://www.encodeproject.org/files/ENCFF780JWE/@@download/ENCFF780JWE.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF954GWL bigBed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF250LEC 11294097 ENCODE Processing Pipeline 3d94f2a2f334e021428b7224047af386 https://www.encodeproject.org/files/ENCFF954GWL/@@download/ENCFF954GWL.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF710AEW bigBed narrowPeak peaks and background as input for IDR ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF351DDA 11135693 ENCODE Processing Pipeline 78670116924e74b106b3d00bdf5da762 https://www.encodeproject.org/files/ENCFF710AEW/@@download/ENCFF710AEW.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF965HUB bed narrowPeak conservative idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF048NGW, ENCFF250LEC, ENCFF351DDA, ENCFF547MET 249531 ENCODE Processing Pipeline 1f736e85e3dc73654a05cf7071c1dda4 https://www.encodeproject.org/files/ENCFF965HUB/@@download/ENCFF965HUB.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF756NPB bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF965HUB 633447 ENCODE Processing Pipeline f4536919f555f62a7d91ddc6998ada59 https://www.encodeproject.org/files/ENCFF756NPB/@@download/ENCFF756NPB.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF537JCU bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF780JWE 690174 ENCODE Processing Pipeline e33b64c00322031e3ee6af7777db7f9d https://www.encodeproject.org/files/ENCFF537JCU/@@download/ENCFF537JCU.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF001NRZ bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NSC 405262798 Michael Snyder, Stanford 2a2c5b29cf7cabbb249f43dcc2a9166e https://www.encodeproject.org/files/ENCFF001NRZ/@@download/ENCFF001NRZ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NSA bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NSE 442469879 Michael Snyder, Stanford ab05e34ae1cad5f08fc99b14b124f135 https://www.encodeproject.org/files/ENCFF001NSA/@@download/ENCFF001NSA.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NSB bigBed narrowPeak peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YJL 1294743 Michael Snyder, Stanford ae6289b8a427bd1c0c53f9365c0370ff https://www.encodeproject.org/files/ENCFF001NSB/@@download/ENCFF001NSB.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NSC fastq reads ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 769527070 Michael Snyder, Stanford d954e3cfeed2db29c854000c359582d7 https://www.encodeproject.org/files/ENCFF001NSC/@@download/ENCFF001NSC.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTS/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NSE fastq reads ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 841891121 Michael Snyder, Stanford 8e9acde6edbcc61c54223c7226538454 https://www.encodeproject.org/files/ENCFF001NSE/@@download/ENCFF001NSE.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTU/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001NSG bigWig signal ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRZ, ENCFF001NSA 144859369 Michael Snyder, Stanford bb97c894017dcbeb44dbb8c59534548d https://www.encodeproject.org/files/ENCFF001NSG/@@download/ENCFF001NSG.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001YJL bed narrowPeak peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NRZ, ENCFF001NSA 465945 Michael Snyder, Stanford 41fbb59831f62063fc9bd2710d2f6122 https://www.encodeproject.org/files/ENCFF001YJL/@@download/ENCFF001YJL.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF792HBS bam unfiltered alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NSE, ENCFF018NEO 937309704 ENCODE Processing Pipeline e45266ffada18ed2625a4b41e41377fa https://www.encodeproject.org/files/ENCFF792HBS/@@download/ENCFF792HBS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF514YIN bam unfiltered alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NSC, ENCFF018NEO 852314506 ENCODE Processing Pipeline 42ac385ca2c69b7633ac99dc58bc36ad https://www.encodeproject.org/files/ENCFF514YIN/@@download/ENCFF514YIN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF975YHZ bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NSE, ENCFF018NEO 619217855 ENCODE Processing Pipeline e1f1748bdcbf62103b012a64c6acdc4d https://www.encodeproject.org/files/ENCFF975YHZ/@@download/ENCFF975YHZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF884OQV bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NSC, ENCFF018NEO 537380418 ENCODE Processing Pipeline 1eb1a3c6a90683e3ac2841bf113b73aa https://www.encodeproject.org/files/ENCFF884OQV/@@download/ENCFF884OQV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF999OGB bigWig signal p-value ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV 384934558 ENCODE Processing Pipeline 68e707d292b2c9683e6daad86854b522 https://www.encodeproject.org/files/ENCFF999OGB/@@download/ENCFF999OGB.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF083LPU bigWig signal p-value ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF975YHZ 402666327 ENCODE Processing Pipeline d4a53897680c5d890efb8f49d300b642 https://www.encodeproject.org/files/ENCFF083LPU/@@download/ENCFF083LPU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF686HPH bigWig signal p-value ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV, ENCFF975YHZ 551574365 ENCODE Processing Pipeline 68c941886d5224f9e4618c3111e0d5f0 https://www.encodeproject.org/files/ENCFF686HPH/@@download/ENCFF686HPH.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF625HSN bigWig fold change over control ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV 319445620 ENCODE Processing Pipeline 4f3b20ee044b44f6f5aca14c102ad8df https://www.encodeproject.org/files/ENCFF625HSN/@@download/ENCFF625HSN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF408JMT bigWig fold change over control ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF975YHZ 339312475 ENCODE Processing Pipeline c354a4f11a9f14d67c58c74bd13621fc https://www.encodeproject.org/files/ENCFF408JMT/@@download/ENCFF408JMT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF283VEC bigWig fold change over control ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV, ENCFF975YHZ 540178425 ENCODE Processing Pipeline dc33562506d8d1acf656d7274ecf40f1 https://www.encodeproject.org/files/ENCFF283VEC/@@download/ENCFF283VEC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF170CUA bed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF479KKI, ENCFF975YHZ 4900352 ENCODE Processing Pipeline f1ea2e9016009392dd3265cbe3e887d3 https://www.encodeproject.org/files/ENCFF170CUA/@@download/ENCFF170CUA.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF439TUB bed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV 4759384 ENCODE Processing Pipeline 5b2cba69190395c14b40ab3ca012bf26 https://www.encodeproject.org/files/ENCFF439TUB/@@download/ENCFF439TUB.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF332WUR bed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF479KKI, ENCFF884OQV, ENCFF975YHZ 5435262 ENCODE Processing Pipeline 796275a5e6e3af2a4bc534e2a0077553 https://www.encodeproject.org/files/ENCFF332WUR/@@download/ENCFF332WUR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF614MIS bigBed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF439TUB 10727252 ENCODE Processing Pipeline e63cb75083050fdbe1f4e048d74544da https://www.encodeproject.org/files/ENCFF614MIS/@@download/ENCFF614MIS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF677YFF bigBed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF170CUA 10806345 ENCODE Processing Pipeline 1b620b627a21a3f9288602183d164316 https://www.encodeproject.org/files/ENCFF677YFF/@@download/ENCFF677YFF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF319CMX bigBed narrowPeak peaks and background as input for IDR ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF332WUR 11285213 ENCODE Processing Pipeline b3b54ac87ab6627d446a81f91fb8ab0d https://www.encodeproject.org/files/ENCFF319CMX/@@download/ENCFF319CMX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF501XGD bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF904QRA 924328 ENCODE Processing Pipeline 2b5a76c8e500d809b092716c7ce265e3 https://www.encodeproject.org/files/ENCFF501XGD/@@download/ENCFF501XGD.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF904QRA bed narrowPeak conservative idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF170CUA, ENCFF332WUR, ENCFF439TUB, ENCFF547MET 452446 ENCODE Processing Pipeline 0c63fd9694be7aedb4e236b84b1df76f https://www.encodeproject.org/files/ENCFF904QRA/@@download/ENCFF904QRA.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF072ADQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF451ZPC 934167 ENCODE Processing Pipeline e9c4f5ddb57bca54be791b97644c7d24 https://www.encodeproject.org/files/ENCFF072ADQ/@@download/ENCFF072ADQ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF451ZPC bed narrowPeak optimal idr thresholded peaks ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF170CUA, ENCFF332WUR, ENCFF439TUB, ENCFF547MET 457750 ENCODE Processing Pipeline 6afe57353c674fc5ee94857647777768 https://www.encodeproject.org/files/ENCFF451ZPC/@@download/ENCFF451ZPC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001OAM bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001OAO 516894301 Michael Snyder, Stanford 66fa12e585f4ff16143b8c08d3eafbd8 https://www.encodeproject.org/files/ENCFF001OAM/@@download/ENCFF001OAM.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001OAN bigBed narrowPeak peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YKJ 608006 Michael Snyder, Stanford 2325d5bd2708a0f2dd38a2c744927440 https://www.encodeproject.org/files/ENCFF001OAN/@@download/ENCFF001OAN.bigBed mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001OAO fastq reads ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1158858570 Michael Snyder, Stanford 706d63c2935991b192dcf5aa4f1caf6e https://www.encodeproject.org/files/ENCFF001OAO/@@download/ENCFF001OAO.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001OAP bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001OAR 451676517 Michael Snyder, Stanford 4e60be3e4dd24549558cc8fcfc5f672f https://www.encodeproject.org/files/ENCFF001OAP/@@download/ENCFF001OAP.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001OAR fastq reads ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 938018403 Michael Snyder, Stanford f0bb1e61477a2fd98ded691b5f331688 https://www.encodeproject.org/files/ENCFF001OAR/@@download/ENCFF001OAR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001OAT bigWig signal ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OAM, ENCFF001OAP 352731656 Michael Snyder, Stanford dc38d9b4abef33b03609fb1020871956 https://www.encodeproject.org/files/ENCFF001OAT/@@download/ENCFF001OAT.bigWig mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001YKJ bed narrowPeak peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OAM, ENCFF001OAP 292678 Michael Snyder, Stanford b2dcafb7a7bdb7de8f10f7f7d9e891fb https://www.encodeproject.org/files/ENCFF001YKJ/@@download/ENCFF001YKJ.bed.gz mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF505MIA bam unfiltered alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OAO, ENCFF018NEO 1259139967 ENCODE Processing Pipeline 9656b6fd1b321f7729999205c3da13b9 https://www.encodeproject.org/files/ENCFF505MIA/@@download/ENCFF505MIA.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF266GGY bam unfiltered alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OAR, ENCFF018NEO 1039725572 ENCODE Processing Pipeline e9387cbff6e2c3cec8f2cb5f9a9a0b64 https://www.encodeproject.org/files/ENCFF266GGY/@@download/ENCFF266GGY.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF049EYU bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OAR, ENCFF018NEO 663897338 ENCODE Processing Pipeline a7f724793df140aadfeb3e8d98390f55 https://www.encodeproject.org/files/ENCFF049EYU/@@download/ENCFF049EYU.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF629AKI bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OAO, ENCFF018NEO 742191086 ENCODE Processing Pipeline 5e32c0fa016edf03b1c5279df8916aeb https://www.encodeproject.org/files/ENCFF629AKI/@@download/ENCFF629AKI.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF049FJS bigWig fold change over control ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF629AKI 315383736 ENCODE Processing Pipeline a209bd189f8b954b9fde9b6672e6c30f https://www.encodeproject.org/files/ENCFF049FJS/@@download/ENCFF049FJS.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF239GHK bigWig signal p-value ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF629AKI 294383678 ENCODE Processing Pipeline 6f73546df0d7a5c620e0c88bb4341735 https://www.encodeproject.org/files/ENCFF239GHK/@@download/ENCFF239GHK.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF402LML bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF860QLN 115888 ENCODE Processing Pipeline 9102133a7f87ccefa73b867cf41689e0 https://www.encodeproject.org/files/ENCFF402LML/@@download/ENCFF402LML.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF847VTQ bed narrowPeak optimal idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF140WUQ, ENCFF274IPR, ENCFF448VYN, ENCFF547MET 79371 ENCODE Processing Pipeline 97de8795100b982fe1acaabf1b74f139 https://www.encodeproject.org/files/ENCFF847VTQ/@@download/ENCFF847VTQ.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF274IPR bed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF629AKI 82345 ENCODE Processing Pipeline ca12c341b7341d0119fe64e960ab25e8 https://www.encodeproject.org/files/ENCFF274IPR/@@download/ENCFF274IPR.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF894ECY bigBed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF274IPR 241302 ENCODE Processing Pipeline 73ba0c42d3e28d3c2131174856891679 https://www.encodeproject.org/files/ENCFF894ECY/@@download/ENCFF894ECY.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF348PND bigBed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF140WUQ 10825108 ENCODE Processing Pipeline f85ba618e2d8a4334bfdc68f8d85af6c https://www.encodeproject.org/files/ENCFF348PND/@@download/ENCFF348PND.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF598XNI bigWig signal p-value ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF049EYU, ENCFF171OVT, ENCFF629AKI 295010989 ENCODE Processing Pipeline 7bb37889a3c9a828bdbd28c094bd27c8 https://www.encodeproject.org/files/ENCFF598XNI/@@download/ENCFF598XNI.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF860QLN bed narrowPeak conservative idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF140WUQ, ENCFF274IPR, ENCFF448VYN, ENCFF547MET 33870 ENCODE Processing Pipeline 4f206ab25ac89cd266dbeb4620b5b85c https://www.encodeproject.org/files/ENCFF860QLN/@@download/ENCFF860QLN.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF252GSD bigWig signal p-value ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF049EYU, ENCFF171OVT 286412763 ENCODE Processing Pipeline b69a535b7418a845f535dc3c778ac104 https://www.encodeproject.org/files/ENCFF252GSD/@@download/ENCFF252GSD.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF668OIS bigWig fold change over control ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF049EYU, ENCFF171OVT 294658924 ENCODE Processing Pipeline 7fffd2d0b98f1fa650be6a3910f17ff9 https://www.encodeproject.org/files/ENCFF668OIS/@@download/ENCFF668OIS.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF161IED bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF847VTQ 180047 ENCODE Processing Pipeline 41f2f0578ed95840b855263f3565fab2 https://www.encodeproject.org/files/ENCFF161IED/@@download/ENCFF161IED.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF141IPU bigWig fold change over control ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF049EYU, ENCFF171OVT, ENCFF629AKI 509325866 ENCODE Processing Pipeline b380b78e407f0414bd3a1b485fc136a7 https://www.encodeproject.org/files/ENCFF141IPU/@@download/ENCFF141IPU.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF448VYN bed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF049EYU, ENCFF171OVT 4171073 ENCODE Processing Pipeline ea601ceee87684cb841b4d82d222608d https://www.encodeproject.org/files/ENCFF448VYN/@@download/ENCFF448VYN.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF140WUQ bed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF049EYU, ENCFF171OVT, ENCFF629AKI 4922196 ENCODE Processing Pipeline 6161af0c6d2d646ffebaf352e10f3a87 https://www.encodeproject.org/files/ENCFF140WUQ/@@download/ENCFF140WUQ.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF919EAE bigBed narrowPeak peaks and background as input for IDR ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF448VYN 10235142 ENCODE Processing Pipeline 334ee6ac96faf0ec100adcd0cc76ef7e https://www.encodeproject.org/files/ENCFF919EAE/@@download/ENCFF919EAE.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001LLR bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LLY 885224901 Bing Ren, UCSD ea1db9b6b5e548783834e86919e5a64e https://www.encodeproject.org/files/ENCFF001LLR/@@download/ENCFF001LLR.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLO bigBed broadPeak peaks ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE ENCFF001YAK 502338 Bing Ren, UCSD 88bffe824cb934f889273603832c3f85 https://www.encodeproject.org/files/ENCFF001LLO/@@download/ENCFF001LLO.bigBed mm9 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLQ bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LLV 381991534 Bing Ren, UCSD 308ec776bbeed993133d922d91c54d6d https://www.encodeproject.org/files/ENCFF001LLQ/@@download/ENCFF001LLQ.bam mm9 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLT bigWig signal ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 57513472 Bing Ren, UCSD 3f51ebd80919f3dce9e25edfbc9fa2ec https://www.encodeproject.org/files/ENCFF001LLT/@@download/ENCFF001LLT.bigWig mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLV fastq reads ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 379068820 Bing Ren, UCSD 8b30aab1e0b73212012690f6b39899a8 https://www.encodeproject.org/files/ENCFF001LLV/@@download/ENCFF001LLV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KLI/ archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001LLY fastq reads ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 914808631 Bing Ren, UCSD f9d59cca1ae133f7f6289c5a4951ece5 https://www.encodeproject.org/files/ENCFF001LLY/@@download/ENCFF001LLY.fastq.gz Illumina HiSeq 2000 /files/ENCFF044CWG/ archived mild to moderate bottlenecking, inconsistent platforms, inconsistent control read length insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001YAK bed broadPeak peaks ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 371652 Bing Ren, UCSD 541d9264f358bc568d3e1154a29ca690 https://www.encodeproject.org/files/ENCFF001YAK/@@download/ENCFF001YAK.bed.gz mm9 archived mild to moderate bottlenecking, inconsistent platforms missing derived_from insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF104TPG bam unfiltered alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LLV, ENCFF018NEO 400434569 ENCODE Processing Pipeline b74bc8d595373a32f835709d1e416abf https://www.encodeproject.org/files/ENCFF104TPG/@@download/ENCFF104TPG.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF600RDL bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LLV, ENCFF018NEO 177489057 ENCODE Processing Pipeline 2b7d831bb64e01bc1ea7dc5d441ceac1 https://www.encodeproject.org/files/ENCFF600RDL/@@download/ENCFF600RDL.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF428ARW bam unfiltered alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LLY, ENCFF018NEO 915213557 ENCODE Processing Pipeline 0e6fe08a54a0b2194ef0f681ed414a17 https://www.encodeproject.org/files/ENCFF428ARW/@@download/ENCFF428ARW.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF197ZXT bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LLY, ENCFF018NEO 220125330 ENCODE Processing Pipeline a5ee6d7cfd2a22f1df51cf03bbbc974b https://www.encodeproject.org/files/ENCFF197ZXT/@@download/ENCFF197ZXT.bam mm10 archived mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF001MDG bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MDP 4032725873 Ross Hardison, PennState 0568225b551f419f321d9df4cdeea2a3 https://www.encodeproject.org/files/ENCFF001MDG/@@download/ENCFF001MDG.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MDH bigBed broadPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YDS 4409105 Ross Hardison, PennState 8a03639ab60ed8de79246e82edb9ccf2 https://www.encodeproject.org/files/ENCFF001MDH/@@download/ENCFF001MDH.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MDI bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MDQ 6683371849 Ross Hardison, PennState 4e0931bdf54b66cdc38ece45f60f638f https://www.encodeproject.org/files/ENCFF001MDI/@@download/ENCFF001MDI.bam mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MDJ bigBed broadPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YDT 3622627 Ross Hardison, PennState e23dd97c2cedc335dbdc75372c6fc7a4 https://www.encodeproject.org/files/ENCFF001MDJ/@@download/ENCFF001MDJ.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MDK bigBed broadPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YDU 4768801 Ross Hardison, PennState 7ed0825728a0222b112573ecd6d92bfe https://www.encodeproject.org/files/ENCFF001MDK/@@download/ENCFF001MDK.bigBed mm9 archived inconsistent platforms biological replicates with identical biosample ENCFF001MDL bigWig signal ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5068243575 Ross Hardison, PennState 6c8f5737f565e5e97f7989442beaafb2 https://www.encodeproject.org/files/ENCFF001MDL/@@download/ENCFF001MDL.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MDN bigWig signal ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5804435855 Ross Hardison, PennState afce68ee008e25d047bb4515bb83473b https://www.encodeproject.org/files/ENCFF001MDN/@@download/ENCFF001MDN.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MDO bigWig signal ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 6286659866 Ross Hardison, PennState ffcbeb157e018886f80c2ade44ceffb9 https://www.encodeproject.org/files/ENCFF001MDO/@@download/ENCFF001MDO.bigWig mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001MDP fastq reads ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 3713932291 Ross Hardison, PennState 714dc0667fb34bd2ba0cad39dd81460b https://www.encodeproject.org/files/ENCFF001MDP/@@download/ENCFF001MDP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUT/ released inconsistent platforms, inconsistent control read length biological replicates with identical biosample ENCFF001MDQ fastq reads ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 6159370888 Ross Hardison, PennState b5ef52eecca4a3c193f2c9988d550ab6 https://www.encodeproject.org/files/ENCFF001MDQ/@@download/ENCFF001MDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MUW/ released inconsistent platforms biological replicates with identical biosample ENCFF001YDS bed broadPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2132970 Ross Hardison, PennState e3aa47a44bcde38deebc00d35c87b394 https://www.encodeproject.org/files/ENCFF001YDS/@@download/ENCFF001YDS.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDT bed broadPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 1686971 Ross Hardison, PennState aab87d38398c735f87137a780a7903ff https://www.encodeproject.org/files/ENCFF001YDT/@@download/ENCFF001YDT.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001YDU bed broadPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 2123324 Ross Hardison, PennState 5c026a6a64039f07af408b3ccc055567 https://www.encodeproject.org/files/ENCFF001YDU/@@download/ENCFF001YDU.bed.gz mm9 archived inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF016UOM bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001MDQ, ENCFF806TVZ 5232989729 ENCODE Processing Pipeline 74a136d50706e42b06087a636f5f5f16 https://www.encodeproject.org/files/ENCFF016UOM/@@download/ENCFF016UOM.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF495FTL bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001MDP, ENCFF806TVZ 3440047916 ENCODE Processing Pipeline 18063ee9973efe242b69fd9557f633cf https://www.encodeproject.org/files/ENCFF495FTL/@@download/ENCFF495FTL.bam mm10-minimal archived inconsistent platforms biological replicates with identical biosample ENCFF516QKS bam unfiltered alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MDP, ENCFF018NEO 3545243474 ENCODE Processing Pipeline 87a65b3b3c9372503b45912f9772b932 https://www.encodeproject.org/files/ENCFF516QKS/@@download/ENCFF516QKS.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF846GLS bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MDP, ENCFF018NEO 2901315783 ENCODE Processing Pipeline 20225563a5b8864b7051240b7da05d85 https://www.encodeproject.org/files/ENCFF846GLS/@@download/ENCFF846GLS.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF308GNU bam unfiltered alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MDQ, ENCFF018NEO 5802252657 ENCODE Processing Pipeline 8c0e5e13f72b81046775b586bd464448 https://www.encodeproject.org/files/ENCFF308GNU/@@download/ENCFF308GNU.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF587TYG bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MDQ, ENCFF018NEO 4521838196 ENCODE Processing Pipeline cbc9a94c72042b4cd54b6d3151f16424 https://www.encodeproject.org/files/ENCFF587TYG/@@download/ENCFF587TYG.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF186ZRW bigBed narrowPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF198USI 13032991 ENCODE Processing Pipeline 0091fa1b74e9326066a4c46386f09cfc https://www.encodeproject.org/files/ENCFF186ZRW/@@download/ENCFF186ZRW.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF198USI bed narrowPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF769SND, ENCFF846GLS, ENCFF887RWQ 5686142 ENCODE Processing Pipeline 75f155f4c5159580ba5d2c5604830148 https://www.encodeproject.org/files/ENCFF198USI/@@download/ENCFF198USI.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF563QPM bed narrowPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF587TYG, ENCFF769SND, ENCFF846GLS, ENCFF887RWQ 7463040 ENCODE Processing Pipeline 32c8d1d1bb621497cb81b8c5761d9598 https://www.encodeproject.org/files/ENCFF563QPM/@@download/ENCFF563QPM.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF587BYK bed narrowPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF587TYG, ENCFF769SND, ENCFF887RWQ 10194366 ENCODE Processing Pipeline 4d8a5484d0c4f97eb4d2c1198a04a8fd https://www.encodeproject.org/files/ENCFF587BYK/@@download/ENCFF587BYK.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF512ZRR bigBed narrowPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF587BYK 25627444 ENCODE Processing Pipeline 9683a6a4326d391bfe1e8c57641f9dab https://www.encodeproject.org/files/ENCFF512ZRR/@@download/ENCFF512ZRR.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF874XXW bigBed narrowPeak peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF563QPM 17782968 ENCODE Processing Pipeline 353bb9b334a8ac440ce2a0cba2eb7fc4 https://www.encodeproject.org/files/ENCFF874XXW/@@download/ENCFF874XXW.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF687SBB bigWig signal p-value ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF769SND, ENCFF846GLS, ENCFF887RWQ 1032523737 ENCODE Processing Pipeline 6dfa71679c75c2325eba4581f4a9cbd6 https://www.encodeproject.org/files/ENCFF687SBB/@@download/ENCFF687SBB.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF271MHB bigWig signal p-value ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF587TYG, ENCFF769SND, ENCFF887RWQ 1225917980 ENCODE Processing Pipeline 723702d7f1de54e4a416da52542f40d4 https://www.encodeproject.org/files/ENCFF271MHB/@@download/ENCFF271MHB.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF213NED bigWig signal p-value ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF587TYG, ENCFF769SND, ENCFF846GLS, ENCFF887RWQ 1678765418 ENCODE Processing Pipeline 069780678fbd7fe0a120cb31374d662e https://www.encodeproject.org/files/ENCFF213NED/@@download/ENCFF213NED.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF877VAK bigWig fold change over control ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF769SND, ENCFF846GLS, ENCFF887RWQ 1182338820 ENCODE Processing Pipeline 195c802e77d9dcf04578eb9592cca286 https://www.encodeproject.org/files/ENCFF877VAK/@@download/ENCFF877VAK.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF453SMN bigWig fold change over control ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF587TYG, ENCFF769SND, ENCFF887RWQ 1572801611 ENCODE Processing Pipeline f56ce8e617a62e7c1285902ad785718e https://www.encodeproject.org/files/ENCFF453SMN/@@download/ENCFF453SMN.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF817HHK bigWig fold change over control ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF587TYG, ENCFF769SND, ENCFF846GLS, ENCFF887RWQ 1970245023 ENCODE Processing Pipeline 0cb97b256a75549d9a366916a627895c https://www.encodeproject.org/files/ENCFF817HHK/@@download/ENCFF817HHK.bigWig mm10 released inconsistent platforms biological replicates with identical biosample ENCFF484ICQ bed narrowPeak replicated peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF198USI, ENCFF563QPM, ENCFF587BYK 8271814 ENCODE Processing Pipeline 997c3f12e0841cd2259f26be041eb012 https://www.encodeproject.org/files/ENCFF484ICQ/@@download/ENCFF484ICQ.bed.gz mm10 released inconsistent platforms biological replicates with identical biosample ENCFF278DIP bigBed narrowPeak replicated peaks ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF484ICQ 14790044 ENCODE Processing Pipeline a75c91763649f10d9ac7370cea8d55da https://www.encodeproject.org/files/ENCFF278DIP/@@download/ENCFF278DIP.bigBed mm10 released inconsistent platforms biological replicates with identical biosample ENCFF002ADY fastq reads ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 45 single-ended 1634939989 Ross Hardison, PennState ada7126f8ff5fb2d97567d08190910f4 https://www.encodeproject.org/files/ENCFF002ADY/@@download/ENCFF002ADY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002ADZ bigWig signal ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 4540291938 Ross Hardison, PennState 86621b00c4c08ce76d98fbc1ddf2da11 https://www.encodeproject.org/files/ENCFF002ADZ/@@download/ENCFF002ADZ.bigWig mm9 released mixed read lengths, low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEA fastq reads ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 48 single-ended 1584558798 Ross Hardison, PennState 2a5a3f06b9b3d131b9ac7d0324d1247e https://www.encodeproject.org/files/ENCFF002AEA/@@download/ENCFF002AEA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released mixed read lengths, low read length, inconsistent control read length, borderline replicate concordance experiment not submitted to GEO ENCFF002AEB bigWig signal ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 4275153880 Ross Hardison, PennState f5483ec52b598bd4585e4d8ff88b6e19 https://www.encodeproject.org/files/ENCFF002AEB/@@download/ENCFF002AEB.bigWig mm9 released mixed read lengths, low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEC bigWig signal ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 5689185762 Ross Hardison, PennState e415d4dea0516b1d19eb5a6d3c651c6c https://www.encodeproject.org/files/ENCFF002AEC/@@download/ENCFF002AEC.bigWig mm9 released mixed read lengths, low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AED bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF002ADY 2004476729 Ross Hardison, PennState 84609e70acb23bb9c4186e372ba1a898 https://www.encodeproject.org/files/ENCFF002AED/@@download/ENCFF002AED.bam mm9 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002AEE bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF002AEA 1927510956 Ross Hardison, PennState 81bed3ae0b0cae13ab98df051899488d https://www.encodeproject.org/files/ENCFF002AEE/@@download/ENCFF002AEE.bam mm9 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF002AEF bigBed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 606159 Ross Hardison, PennState 5607eaf27481ee76cc43af17b1e52c2f https://www.encodeproject.org/files/ENCFF002AEF/@@download/ENCFF002AEF.bigBed mm9 released mixed read lengths, low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEG bigBed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 216042 Ross Hardison, PennState aa9d180f750287adbf66f89bb352924f https://www.encodeproject.org/files/ENCFF002AEG/@@download/ENCFF002AEG.bigBed mm9 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO, missing derived_from ENCFF002AEH bigBed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 410298 Ross Hardison, PennState f51027f731ff4682ab6a818c55575cc9 https://www.encodeproject.org/files/ENCFF002AEH/@@download/ENCFF002AEH.bigBed mm9 released mixed read lengths, low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF002AEI bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 4095682456 Ross Hardison, PennState 1587d494bd000986898e8f8ab67bc79c https://www.encodeproject.org/files/ENCFF002AEI/@@download/ENCFF002AEI.bam mm9 released mixed read lengths, low read length, borderline replicate concordance missing derived_from, experiment not submitted to GEO ENCFF434DJA bed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE ENCFF002AEH 220982 ENCODE Consortium d9f821f6c07ff722e2a020d19790b4c8 https://www.encodeproject.org/files/ENCFF434DJA/@@download/ENCFF434DJA.bed.gz mm9 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF343BAC bed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 1 ENCFF002AEG 106790 ENCODE Consortium 0a148d90bfb9591bdf71bf0ba2341154 https://www.encodeproject.org/files/ENCFF343BAC/@@download/ENCFF343BAC.bed.gz mm9 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF438EEG bed broadPeak peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 1 ENCFF002AEF 379150 ENCODE Consortium 572576318fb10ed9ce3303463d1d2d1a https://www.encodeproject.org/files/ENCFF438EEG/@@download/ENCFF438EEG.bed.gz mm9 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF775BML bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 45 ENCFF002ADY, ENCFF018NEO 1389677911 ENCODE Processing Pipeline a88228ed0c69362cfab83b6eecf28629 https://www.encodeproject.org/files/ENCFF775BML/@@download/ENCFF775BML.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF910TVB bam unfiltered alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 45 ENCFF002ADY, ENCFF018NEO 2127281150 ENCODE Processing Pipeline 9e918a4efee12f1c99fbdc7b378fcfb8 https://www.encodeproject.org/files/ENCFF910TVB/@@download/ENCFF910TVB.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF340YLN bam unfiltered alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 45 ENCFF002AEA, ENCFF018NEO 1972286958 ENCODE Processing Pipeline e3f4e5abdb3cffff17c5edeab81c68ea https://www.encodeproject.org/files/ENCFF340YLN/@@download/ENCFF340YLN.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF536YVP bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 45 ENCFF002AEA, ENCFF018NEO 1353141107 ENCODE Processing Pipeline 399fadeeaeff1b791db6ab1f20f8d39a https://www.encodeproject.org/files/ENCFF536YVP/@@download/ENCFF536YVP.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF224PRU bigWig signal p-value ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF666VRA, ENCFF775BML 561316944 ENCODE Processing Pipeline 0496cedbb778268f985ad7622c58adce https://www.encodeproject.org/files/ENCFF224PRU/@@download/ENCFF224PRU.bigWig mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF872JDK bigWig signal p-value ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF111OFQ, ENCFF536YVP 537118798 ENCODE Processing Pipeline e20cbd714b3a6ed231f85fe309a724c7 https://www.encodeproject.org/files/ENCFF872JDK/@@download/ENCFF872JDK.bigWig mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF752WKJ bed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF666VRA, ENCFF775BML 5873702 ENCODE Processing Pipeline 810c019ff38ccfe6efcccd87e9857005 https://www.encodeproject.org/files/ENCFF752WKJ/@@download/ENCFF752WKJ.bed.gz mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF717OFI bed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF536YVP, ENCFF666VRA, ENCFF775BML 6890085 ENCODE Processing Pipeline b8f908f56664ff7bc2afd635a0e6ae11 https://www.encodeproject.org/files/ENCFF717OFI/@@download/ENCFF717OFI.bed.gz mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF180VCU bigWig fold change over control ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF111OFQ, ENCFF536YVP 548658945 ENCODE Processing Pipeline d849e212e49f40be1446b795f1e4f673 https://www.encodeproject.org/files/ENCFF180VCU/@@download/ENCFF180VCU.bigWig mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF478BIW bed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF111OFQ, ENCFF536YVP 5183742 ENCODE Processing Pipeline 32b0c140e98caf24148fc92e51572a51 https://www.encodeproject.org/files/ENCFF478BIW/@@download/ENCFF478BIW.bed.gz mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF468NLM bigWig signal p-value ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF536YVP, ENCFF666VRA, ENCFF775BML 982260856 ENCODE Processing Pipeline 8a92148fe506c8ed715875dee6910f11 https://www.encodeproject.org/files/ENCFF468NLM/@@download/ENCFF468NLM.bigWig mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF232UNC bigWig fold change over control ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF111OFQ, ENCFF536YVP, ENCFF666VRA, ENCFF775BML 1097780315 ENCODE Processing Pipeline 5274d30be8f42897a24315db4608d562 https://www.encodeproject.org/files/ENCFF232UNC/@@download/ENCFF232UNC.bigWig mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF413RYD bigBed narrowPeak conservative idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF557KRT 411027 ENCODE Processing Pipeline ae63d0150b6a9ac66f7e9ff8c2672f39 https://www.encodeproject.org/files/ENCFF413RYD/@@download/ENCFF413RYD.bigBed mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF901LCA bigBed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 ENCFF478BIW 11242691 ENCODE Processing Pipeline 96628ab7a4e01531205e9b97477165cb https://www.encodeproject.org/files/ENCFF901LCA/@@download/ENCFF901LCA.bigBed mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF146LOS bigWig fold change over control ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF666VRA, ENCFF775BML 537214709 ENCODE Processing Pipeline 27d47f89d9c6e3506025cf0b11f481e3 https://www.encodeproject.org/files/ENCFF146LOS/@@download/ENCFF146LOS.bigWig mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF422CZR bigBed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 ENCFF752WKJ 13555451 ENCODE Processing Pipeline 490934f97b2e28298523663c4215dbcc https://www.encodeproject.org/files/ENCFF422CZR/@@download/ENCFF422CZR.bigBed mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF426RXG bigBed narrowPeak peaks and background as input for IDR ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF717OFI 13579558 ENCODE Processing Pipeline c83c343ebe1c876c4ae51ab2eb36c71d https://www.encodeproject.org/files/ENCFF426RXG/@@download/ENCFF426RXG.bigBed mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF557KRT bed narrowPeak conservative idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF478BIW, ENCFF547MET, ENCFF717OFI, ENCFF752WKJ 175529 ENCODE Processing Pipeline 4c4394e904521422e7feba0c6f4cdc28 https://www.encodeproject.org/files/ENCFF557KRT/@@download/ENCFF557KRT.bed.gz mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF495GBW bed narrowPeak optimal idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF478BIW, ENCFF547MET, ENCFF717OFI, ENCFF752WKJ 287900 ENCODE Processing Pipeline 0ae8fa52a3e0d20810077c120a7ebd25 https://www.encodeproject.org/files/ENCFF495GBW/@@download/ENCFF495GBW.bed.gz mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF904RHK bigBed narrowPeak optimal idr thresholded peaks ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1, 2 ENCFF495GBW 579306 ENCODE Processing Pipeline 49c74c254f93481e6d41ccddd4d615c7 https://www.encodeproject.org/files/ENCFF904RHK/@@download/ENCFF904RHK.bigBed mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF001NUQ bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NVQ 274327540 Michael Snyder, Stanford 3e1217d8fa60fca5133c761368016b6c https://www.encodeproject.org/files/ENCFF001NUQ/@@download/ENCFF001NUQ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NUR bigBed narrowPeak peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJP 146957 Michael Snyder, Stanford f36483391a81c5e5ee312254940aac23 https://www.encodeproject.org/files/ENCFF001NUR/@@download/ENCFF001NUR.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NUS bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NVR 341046035 Michael Snyder, Stanford 7fb5dc62fa91aa1aa7e93a2290e483b9 https://www.encodeproject.org/files/ENCFF001NUS/@@download/ENCFF001NUS.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NUU bigWig signal ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NUQ, ENCFF001NUS 255524536 Michael Snyder, Stanford f33e5836482854e27f1c4933697366bc https://www.encodeproject.org/files/ENCFF001NUU/@@download/ENCFF001NUU.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NVQ fastq reads ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1096915730 Michael Snyder, Stanford 551d771460f19252ff0f57004d802032 https://www.encodeproject.org/files/ENCFF001NVQ/@@download/ENCFF001NVQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NVR fastq reads ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 955289943 Michael Snyder, Stanford b86c808a23e2c7cb214b4b4cc72792ed https://www.encodeproject.org/files/ENCFF001NVR/@@download/ENCFF001NVR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJP bed narrowPeak peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NUQ, ENCFF001NUS 39622 Michael Snyder, Stanford ef4ed830452c2931ca21e50a4a96b1de https://www.encodeproject.org/files/ENCFF001YJP/@@download/ENCFF001YJP.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF230GBO bam unfiltered alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVQ, ENCFF018NEO 1210867924 ENCODE Processing Pipeline 30c94c65841a671a4b0252bd7ca66d07 https://www.encodeproject.org/files/ENCFF230GBO/@@download/ENCFF230GBO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF422MYV bam unfiltered alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVR, ENCFF018NEO 1112190733 ENCODE Processing Pipeline efd914ed7067d88bd830fa8e4532ac10 https://www.encodeproject.org/files/ENCFF422MYV/@@download/ENCFF422MYV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF442YKL bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVQ, ENCFF018NEO 542742812 ENCODE Processing Pipeline 855c921b2393571e054273d6aeee6bbc https://www.encodeproject.org/files/ENCFF442YKL/@@download/ENCFF442YKL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF106BFG bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVR, ENCFF018NEO 640421622 ENCODE Processing Pipeline 658267062caf03d056a39ca3cb671497 https://www.encodeproject.org/files/ENCFF106BFG/@@download/ENCFF106BFG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF673UJE bigWig fold change over control ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF106BFG, ENCFF171OVT, ENCFF442YKL 405611475 ENCODE Processing Pipeline 653945739c1ecfa76d42a02161c25031 https://www.encodeproject.org/files/ENCFF673UJE/@@download/ENCFF673UJE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF210AMG bigBed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF900VBP 9742909 ENCODE Processing Pipeline 1bc68bc306903a08f7268d95858682c3 https://www.encodeproject.org/files/ENCFF210AMG/@@download/ENCFF210AMG.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF889LZC bigWig signal p-value ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF106BFG, ENCFF171OVT 257825696 ENCODE Processing Pipeline 03c038857753f82b6960a8c13f834e25 https://www.encodeproject.org/files/ENCFF889LZC/@@download/ENCFF889LZC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF302XAM bigWig signal p-value ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF106BFG, ENCFF171OVT, ENCFF442YKL 311205459 ENCODE Processing Pipeline 4e4ec2ddacfc2f23dc3326576ccc784a https://www.encodeproject.org/files/ENCFF302XAM/@@download/ENCFF302XAM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF053BUD bed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF106BFG, ENCFF171OVT, ENCFF442YKL 5357881 ENCODE Processing Pipeline da70c6985f9389f15ad9035706341a08 https://www.encodeproject.org/files/ENCFF053BUD/@@download/ENCFF053BUD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF498IBK bigBed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF186EFZ 10411958 ENCODE Processing Pipeline 9f03180d07524f62abd8c57b73107fb7 https://www.encodeproject.org/files/ENCFF498IBK/@@download/ENCFF498IBK.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF370SHD bigWig fold change over control ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF106BFG, ENCFF171OVT 258475398 ENCODE Processing Pipeline b7f5928a4fc70d4613d92da8ac74fd64 https://www.encodeproject.org/files/ENCFF370SHD/@@download/ENCFF370SHD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF690ZGB bigWig signal p-value ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF442YKL 256895159 ENCODE Processing Pipeline 065464874537a3e057595977883c3feb https://www.encodeproject.org/files/ENCFF690ZGB/@@download/ENCFF690ZGB.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF480ILK bigWig fold change over control ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF442YKL 221572529 ENCODE Processing Pipeline a10104891b406c51a7f3a8d86e38be43 https://www.encodeproject.org/files/ENCFF480ILK/@@download/ENCFF480ILK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF900VBP bed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF442YKL 4170389 ENCODE Processing Pipeline f348fa1f8fc0b519e04947da8b35f640 https://www.encodeproject.org/files/ENCFF900VBP/@@download/ENCFF900VBP.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF802GKY bed narrowPeak conservative idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF053BUD, ENCFF186EFZ, ENCFF547MET, ENCFF900VBP 109320 ENCODE Processing Pipeline b6c0b8fd9f601e29fea4a6d469b895b7 https://www.encodeproject.org/files/ENCFF802GKY/@@download/ENCFF802GKY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF299TLS bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF802GKY 251919 ENCODE Processing Pipeline aacf64b0cd948f5503ed482275ad4f55 https://www.encodeproject.org/files/ENCFF299TLS/@@download/ENCFF299TLS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF373GVF bigBed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF053BUD 13011499 ENCODE Processing Pipeline 6abb7a722f75588387d5bc508fad9463 https://www.encodeproject.org/files/ENCFF373GVF/@@download/ENCFF373GVF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF589AAH bed narrowPeak optimal idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF053BUD, ENCFF186EFZ, ENCFF547MET, ENCFF900VBP 135761 ENCODE Processing Pipeline c64ddd8c3be9e1c1649a1807c4547365 https://www.encodeproject.org/files/ENCFF589AAH/@@download/ENCFF589AAH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF939XTW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF589AAH 290626 ENCODE Processing Pipeline a7d03e45fab27de75fe233e1e287bb21 https://www.encodeproject.org/files/ENCFF939XTW/@@download/ENCFF939XTW.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF186EFZ bed narrowPeak peaks and background as input for IDR ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF106BFG, ENCFF171OVT 4763675 ENCODE Processing Pipeline 8c131b4bd4258094e93c230bd1313971 https://www.encodeproject.org/files/ENCFF186EFZ/@@download/ENCFF186EFZ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF002AEN fastq reads ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1221950444 Bing Ren, UCSD 2302dbb806319e38eeaf38e1adcc23ac SRA:SRR3651845 https://www.encodeproject.org/files/ENCFF002AEN/@@download/ENCFF002AEN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APQ/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002AEO fastq reads ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1254270920 Bing Ren, UCSD b7032e4b2a4862dfbb7fd8e19cbe9398 SRA:SRR3651846 https://www.encodeproject.org/files/ENCFF002AEO/@@download/ENCFF002AEO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APT/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF750BPO bam alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AEO, ENCFF806TVZ 582750825 ENCODE Processing Pipeline 057863d523719ab3d9becc88ae729456 https://www.encodeproject.org/files/ENCFF750BPO/@@download/ENCFF750BPO.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF133BTR bam alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AEN, ENCFF806TVZ 881445031 ENCODE Processing Pipeline 66f929c78b0533a58ce5b07c823fa269 https://www.encodeproject.org/files/ENCFF133BTR/@@download/ENCFF133BTR.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF178JTU bigBed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF428YYK 3860937 ENCODE Processing Pipeline 7148b21afd7b5fdb70022a077ffc3e0c https://www.encodeproject.org/files/ENCFF178JTU/@@download/ENCFF178JTU.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF909VIM bed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133BTR, ENCFF351THT, ENCFF528CCC, ENCFF750BPO 1393027 ENCODE Processing Pipeline 74baf141c7d580d2cd11e48ac93949f8 https://www.encodeproject.org/files/ENCFF909VIM/@@download/ENCFF909VIM.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF616AGX bed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF133BTR, ENCFF351THT 891956 ENCODE Processing Pipeline 942df20607c4da4b118950d189a47818 https://www.encodeproject.org/files/ENCFF616AGX/@@download/ENCFF616AGX.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF263CWX bigBed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF616AGX 2236983 ENCODE Processing Pipeline d945e815ae7779082052fbd755e2a4e8 https://www.encodeproject.org/files/ENCFF263CWX/@@download/ENCFF263CWX.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF428YYK bed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF528CCC, ENCFF750BPO 1649683 ENCODE Processing Pipeline 8da7aaeda86092397f6d230de2cdc0d3 https://www.encodeproject.org/files/ENCFF428YYK/@@download/ENCFF428YYK.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF368JUW bigBed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF909VIM 4097827 ENCODE Processing Pipeline 10b67ebacdd3d0739d4d1b224635ae6d https://www.encodeproject.org/files/ENCFF368JUW/@@download/ENCFF368JUW.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF599XAQ bigWig signal p-value ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF133BTR, ENCFF351THT 325979449 ENCODE Processing Pipeline a73a038ee3b33528f22c2bc219ea81a3 https://www.encodeproject.org/files/ENCFF599XAQ/@@download/ENCFF599XAQ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF396QKT bigWig signal p-value ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF528CCC, ENCFF750BPO 293475874 ENCODE Processing Pipeline c6d25139a505d433c53c5b6f0f0a3492 https://www.encodeproject.org/files/ENCFF396QKT/@@download/ENCFF396QKT.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF008EAN bigWig signal p-value ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133BTR, ENCFF351THT, ENCFF528CCC, ENCFF750BPO 532015430 ENCODE Processing Pipeline 2418c36c63d3bc3da79a20ce90094b2e https://www.encodeproject.org/files/ENCFF008EAN/@@download/ENCFF008EAN.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF275QEN bigWig fold change over control ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF133BTR, ENCFF351THT 360914509 ENCODE Processing Pipeline 470b335a48ea850701352b0cc335488f https://www.encodeproject.org/files/ENCFF275QEN/@@download/ENCFF275QEN.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF211GRP bigWig fold change over control ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF528CCC, ENCFF750BPO 263008885 ENCODE Processing Pipeline 74f0ac3211ff62010fc32b2ac2820f71 https://www.encodeproject.org/files/ENCFF211GRP/@@download/ENCFF211GRP.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF287TAW bigWig fold change over control ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133BTR, ENCFF351THT, ENCFF528CCC, ENCFF750BPO 653451794 ENCODE Processing Pipeline 71c78032c59379d7025688c3cb29e9e6 https://www.encodeproject.org/files/ENCFF287TAW/@@download/ENCFF287TAW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF903UVM bed narrowPeak replicated peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF428YYK, ENCFF616AGX, ENCFF909VIM 952514 ENCODE Processing Pipeline e45ba69a2f254c3c0b8584a3d5d92227 https://www.encodeproject.org/files/ENCFF903UVM/@@download/ENCFF903UVM.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF419VQL bigBed narrowPeak replicated peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF903UVM 2368717 ENCODE Processing Pipeline b4386afbef7521db7e5ee1d070172bec https://www.encodeproject.org/files/ENCFF419VQL/@@download/ENCFF419VQL.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF962RLV bam unfiltered alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEO, ENCFF018NEO 1325318848 ENCODE Processing Pipeline b35c8018f6ccec47a30dd27cb9c1e3a6 https://www.encodeproject.org/files/ENCFF962RLV/@@download/ENCFF962RLV.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF990MVF bam unfiltered alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEN, ENCFF018NEO 1418119480 ENCODE Processing Pipeline 617930b8df2ecc7f6fb52bdd9dedc24f https://www.encodeproject.org/files/ENCFF990MVF/@@download/ENCFF990MVF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF426QSR bam alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEN, ENCFF018NEO 881212282 ENCODE Processing Pipeline b24fa351d0002e36dda5c4835a28efcb https://www.encodeproject.org/files/ENCFF426QSR/@@download/ENCFF426QSR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF418VQH bam alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEO, ENCFF018NEO 582648710 ENCODE Processing Pipeline b65a7b369b3ee3f36d043c253c01f39a https://www.encodeproject.org/files/ENCFF418VQH/@@download/ENCFF418VQH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF321BCC bed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF411XWG, ENCFF426QSR 892220 ENCODE Processing Pipeline 35926e57d503c9df906872b0d234a50f https://www.encodeproject.org/files/ENCFF321BCC/@@download/ENCFF321BCC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF748QCC bed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF418VQH 1650234 ENCODE Processing Pipeline 664232e01685262df04a996a8ddaa17e https://www.encodeproject.org/files/ENCFF748QCC/@@download/ENCFF748QCC.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF844UBO bed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF418VQH, ENCFF426QSR 1393271 ENCODE Processing Pipeline c9ee7895e494f2f8977a9e3a4e343e38 https://www.encodeproject.org/files/ENCFF844UBO/@@download/ENCFF844UBO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF651NWK bigBed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF321BCC 2238779 ENCODE Processing Pipeline 1b5733850d4958a4f0254dc2e97469cc https://www.encodeproject.org/files/ENCFF651NWK/@@download/ENCFF651NWK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF947PBO bigBed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF748QCC 3863247 ENCODE Processing Pipeline 1a982d4915bb40adcd18228917daf99b https://www.encodeproject.org/files/ENCFF947PBO/@@download/ENCFF947PBO.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF056ADU bigBed narrowPeak peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF844UBO 4098493 ENCODE Processing Pipeline 70fd0dab9ee40e7f83405908dab074ba https://www.encodeproject.org/files/ENCFF056ADU/@@download/ENCFF056ADU.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF984WXM bigWig signal p-value ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF411XWG, ENCFF426QSR 338911569 ENCODE Processing Pipeline 02aaad19551b1173822cb6c69cce8b86 https://www.encodeproject.org/files/ENCFF984WXM/@@download/ENCFF984WXM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF537BPF bigWig signal p-value ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF418VQH 289151213 ENCODE Processing Pipeline b00fde99933ad167f7076158f0a7c2cd https://www.encodeproject.org/files/ENCFF537BPF/@@download/ENCFF537BPF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF966PHG bigWig signal p-value ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF418VQH, ENCFF426QSR 531488755 ENCODE Processing Pipeline 19ad538c72db6f3f3a2103f372a2769f https://www.encodeproject.org/files/ENCFF966PHG/@@download/ENCFF966PHG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF009HJS bigWig fold change over control ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF411XWG, ENCFF426QSR 361525762 ENCODE Processing Pipeline b2a29ab13abc8be90685af6f36360466 https://www.encodeproject.org/files/ENCFF009HJS/@@download/ENCFF009HJS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF220SMU bigWig fold change over control ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF037YEE, ENCFF418VQH 262995878 ENCODE Processing Pipeline c2542099e921cd1be3c0e04a49ecd189 https://www.encodeproject.org/files/ENCFF220SMU/@@download/ENCFF220SMU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF527FOD bigWig fold change over control ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF037YEE, ENCFF411XWG, ENCFF418VQH, ENCFF426QSR 653538667 ENCODE Processing Pipeline 85292e6b183633871deb18f87b74bbed https://www.encodeproject.org/files/ENCFF527FOD/@@download/ENCFF527FOD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF084IYL bed narrowPeak replicated peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF321BCC, ENCFF748QCC, ENCFF844UBO 952740 ENCODE Processing Pipeline 7ef4509445ac0810d9549b83621a62e6 https://www.encodeproject.org/files/ENCFF084IYL/@@download/ENCFF084IYL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF088LWR bigBed narrowPeak replicated peaks ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF084IYL 2367885 ENCODE Processing Pipeline ddd80ff3b61cf483fd86402e73e99259 https://www.encodeproject.org/files/ENCFF088LWR/@@download/ENCFF088LWR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF002AMF fastq reads ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1536314364 Bing Ren, UCSD b1e4a0b255fc4e0ff82078c0838755e4 SRA:SRR3651858 https://www.encodeproject.org/files/ENCFF002AMF/@@download/ENCFF002AMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARJ/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF002AMG fastq reads ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1700177324 Bing Ren, UCSD f0caeb6db426a9ecc820039e506eeaec SRA:SRR3651857 https://www.encodeproject.org/files/ENCFF002AMG/@@download/ENCFF002AMG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARK/ released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth severe bottlenecking, poor library complexity ENCFF769LYN bam alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMG, ENCFF806TVZ 401678893 ENCODE Processing Pipeline 16a3335f4382749b634448ffe1e81356 https://www.encodeproject.org/files/ENCFF769LYN/@@download/ENCFF769LYN.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF753MOJ bam alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMF, ENCFF806TVZ 1072270807 ENCODE Processing Pipeline 74f66d7b0e34a168b4434f9590ea36b3 https://www.encodeproject.org/files/ENCFF753MOJ/@@download/ENCFF753MOJ.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF366SAL bigBed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF928SZY 2516996 ENCODE Processing Pipeline 1e1b44958b3c30a76ebd4be573517e2e https://www.encodeproject.org/files/ENCFF366SAL/@@download/ENCFF366SAL.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF644GGL bed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF753MOJ, ENCFF934LFS 792677 ENCODE Processing Pipeline 986ac7529e6805d8f24f49b0ecf3eb96 https://www.encodeproject.org/files/ENCFF644GGL/@@download/ENCFF644GGL.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF156VTX bigBed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF870TQP 2580754 ENCODE Processing Pipeline 2acf2fff396f5be5112a67894d95b8d1 https://www.encodeproject.org/files/ENCFF156VTX/@@download/ENCFF156VTX.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF318CQE bigWig signal p-value ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF769LYN, ENCFF934LFS 311253911 ENCODE Processing Pipeline bea6a3e606e345d586b28775adee3d3a https://www.encodeproject.org/files/ENCFF318CQE/@@download/ENCFF318CQE.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF870TQP bed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF444YOE, ENCFF753MOJ, ENCFF769LYN, ENCFF934LFS 815333 ENCODE Processing Pipeline fc449063887290d9c2a15ad38bf43d71 https://www.encodeproject.org/files/ENCFF870TQP/@@download/ENCFF870TQP.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF557SMN bigBed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF644GGL 2500566 ENCODE Processing Pipeline 080cb43d69da7bf6bcf1d5d4f477db93 https://www.encodeproject.org/files/ENCFF557SMN/@@download/ENCFF557SMN.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF928SZY bed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF769LYN, ENCFF934LFS 814106 ENCODE Processing Pipeline db64c2f1dc2738625ce07bf3618ae15d https://www.encodeproject.org/files/ENCFF928SZY/@@download/ENCFF928SZY.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF685RYQ bigWig signal p-value ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF753MOJ, ENCFF934LFS 381238546 ENCODE Processing Pipeline baf20a7b3f04c8988c50cbdd7004b7a3 https://www.encodeproject.org/files/ENCFF685RYQ/@@download/ENCFF685RYQ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF999ZGJ bigWig signal p-value ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF444YOE, ENCFF753MOJ, ENCFF769LYN, ENCFF934LFS 447199133 ENCODE Processing Pipeline dd7c90579889b536d53bb42f9745a7e9 https://www.encodeproject.org/files/ENCFF999ZGJ/@@download/ENCFF999ZGJ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF294TWI bigWig fold change over control ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF444YOE, ENCFF769LYN, ENCFF934LFS 192528406 ENCODE Processing Pipeline 9ab70de78ba22309549c3232b85f79fa https://www.encodeproject.org/files/ENCFF294TWI/@@download/ENCFF294TWI.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF134KAG bigWig fold change over control ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444YOE, ENCFF753MOJ, ENCFF934LFS 400617975 ENCODE Processing Pipeline 4cd4f4ccefc41ab68701f7974e0cb53a https://www.encodeproject.org/files/ENCFF134KAG/@@download/ENCFF134KAG.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF546RIM bigBed narrowPeak replicated peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF333RCR 2043573 ENCODE Processing Pipeline 68491bc7dc00a17c39e4d750d6d54628 https://www.encodeproject.org/files/ENCFF546RIM/@@download/ENCFF546RIM.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF333RCR bed narrowPeak replicated peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF644GGL, ENCFF870TQP, ENCFF928SZY 818999 ENCODE Processing Pipeline 495d519ab8b437ba6976a92803baa808 https://www.encodeproject.org/files/ENCFF333RCR/@@download/ENCFF333RCR.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF472HYF bigWig fold change over control ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF444YOE, ENCFF753MOJ, ENCFF769LYN, ENCFF934LFS 514238155 ENCODE Processing Pipeline 096aacc6f90388558a7b8b20a564bf9c https://www.encodeproject.org/files/ENCFF472HYF/@@download/ENCFF472HYF.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF498LZM bam unfiltered alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMG, ENCFF018NEO 1643771140 ENCODE Processing Pipeline 5b251917e28ba086854ba7b6af05fd55 https://www.encodeproject.org/files/ENCFF498LZM/@@download/ENCFF498LZM.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF056BRP bam unfiltered alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMF, ENCFF018NEO 1294177253 ENCODE Processing Pipeline f62da2f046ac78f93cd614acdd532f2a https://www.encodeproject.org/files/ENCFF056BRP/@@download/ENCFF056BRP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF946TKX bam alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMF, ENCFF018NEO 845819652 ENCODE Processing Pipeline a8acb125dc752a53785908467963bb51 https://www.encodeproject.org/files/ENCFF946TKX/@@download/ENCFF946TKX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF197UYP bam alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMG, ENCFF018NEO 401615980 ENCODE Processing Pipeline 3e34d1dfad983a5bf80e94c58d10d54b https://www.encodeproject.org/files/ENCFF197UYP/@@download/ENCFF197UYP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF563ERJ bed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF197UYP, ENCFF319PHE, ENCFF681SBF 826758 ENCODE Processing Pipeline 209d6ef5a1196128f673a21ef3554c13 https://www.encodeproject.org/files/ENCFF563ERJ/@@download/ENCFF563ERJ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF588WNR bed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF681SBF, ENCFF946TKX 803030 ENCODE Processing Pipeline 018f22480f0c871960f6b73df317b26f https://www.encodeproject.org/files/ENCFF588WNR/@@download/ENCFF588WNR.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF500DDE bed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF197UYP, ENCFF319PHE, ENCFF681SBF, ENCFF946TKX 883090 ENCODE Processing Pipeline 0bf9449cba0a6119cc0aec752bf6dd71 https://www.encodeproject.org/files/ENCFF500DDE/@@download/ENCFF500DDE.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF718NVZ bigBed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF563ERJ 2581247 ENCODE Processing Pipeline 6e1a06dc7638ad8621b3bba67ddb348b https://www.encodeproject.org/files/ENCFF718NVZ/@@download/ENCFF718NVZ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF331ZDL bigBed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF588WNR 2531793 ENCODE Processing Pipeline 675638ee38e92102f317843230a84ab8 https://www.encodeproject.org/files/ENCFF331ZDL/@@download/ENCFF331ZDL.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF714SAM bigWig signal p-value ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF197UYP, ENCFF319PHE, ENCFF681SBF 384719186 ENCODE Processing Pipeline 6c63d0726e48cbc98118925c4dfdaef4 https://www.encodeproject.org/files/ENCFF714SAM/@@download/ENCFF714SAM.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF044XOM bigBed narrowPeak peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF500DDE 2772405 ENCODE Processing Pipeline 625e2efb435a0f3a9c0b99079d663fb6 https://www.encodeproject.org/files/ENCFF044XOM/@@download/ENCFF044XOM.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF829YQB bigWig signal p-value ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF681SBF, ENCFF946TKX 500425917 ENCODE Processing Pipeline ca93d4cb608f537ece20745b328b0a6b https://www.encodeproject.org/files/ENCFF829YQB/@@download/ENCFF829YQB.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF337XHJ bigWig signal p-value ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF197UYP, ENCFF319PHE, ENCFF681SBF, ENCFF946TKX 627676304 ENCODE Processing Pipeline 7ef064a9981b5e40931c5f42fd4515d5 https://www.encodeproject.org/files/ENCFF337XHJ/@@download/ENCFF337XHJ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF185JAI bigWig fold change over control ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF197UYP, ENCFF319PHE, ENCFF681SBF 217585198 ENCODE Processing Pipeline 56c57126dd4925827b7db0d8a38d90ac https://www.encodeproject.org/files/ENCFF185JAI/@@download/ENCFF185JAI.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF526YPG bigWig fold change over control ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF681SBF, ENCFF946TKX 426148102 ENCODE Processing Pipeline 1772344f89de17ba554ea8a5d5a03ec5 https://www.encodeproject.org/files/ENCFF526YPG/@@download/ENCFF526YPG.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF952PTF bigWig fold change over control ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF197UYP, ENCFF319PHE, ENCFF681SBF, ENCFF946TKX 535415743 ENCODE Processing Pipeline d2f90786b84e84a3ce2c87e001e2e34a https://www.encodeproject.org/files/ENCFF952PTF/@@download/ENCFF952PTF.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF791RIA bed narrowPeak replicated peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF500DDE, ENCFF563ERJ, ENCFF588WNR 852317 ENCODE Processing Pipeline d1ec2920c2e05432b19c1b0a0a352008 https://www.encodeproject.org/files/ENCFF791RIA/@@download/ENCFF791RIA.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF129SDK bigBed narrowPeak replicated peaks ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF791RIA 2061157 ENCODE Processing Pipeline f3e895726d07ebdcf463978a4726435e https://www.encodeproject.org/files/ENCFF129SDK/@@download/ENCFF129SDK.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF001MQP bigWig signal ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 2482098878 Ross Hardison, PennState ddff0dff2d668c75d48de8b00fa36197 https://www.encodeproject.org/files/ENCFF001MQP/@@download/ENCFF001MQP.bigWig mm9 released low read length missing derived_from, insufficient read depth for broad peaks control ENCFF001MQQ bam alignments ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQW 1482373649 Ross Hardison, PennState ca4a75fab42da7c95b82e30b1178c055 https://www.encodeproject.org/files/ENCFF001MQQ/@@download/ENCFF001MQQ.bam mm9 released low read length insufficient read depth for broad peaks control ENCFF001MQW fastq reads ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 48 single-ended 1204819618 Ross Hardison, PennState 1574fb40f631be9df8cb7435a06714d9 https://www.encodeproject.org/files/ENCFF001MQW/@@download/ENCFF001MQW.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF340EKR bam unfiltered alignments ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQW, ENCFF806TVZ 1561895903 J. Michael Cherry, Stanford d5c340d953978eceaaf8a08ce5df1c27 https://www.encodeproject.org/files/ENCFF340EKR/@@download/ENCFF340EKR.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF948SVD bam alignments ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQW, ENCFF806TVZ 1165372740 J. Michael Cherry, Stanford 298ac148c99220b8c6f7e0788577e283 https://www.encodeproject.org/files/ENCFF948SVD/@@download/ENCFF948SVD.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF272TOF bam unfiltered alignments ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQW, ENCFF018NEO 1563226616 ENCODE Processing Pipeline d6c803fec12b337a30844c7e6e53d1e7 https://www.encodeproject.org/files/ENCFF272TOF/@@download/ENCFF272TOF.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF911HXZ bam alignments ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQW, ENCFF018NEO 1164889447 ENCODE Processing Pipeline 4e22bb30cdbae811670d42a8d598fa6e https://www.encodeproject.org/files/ENCFF911HXZ/@@download/ENCFF911HXZ.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF002AOJ fastq reads ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1571908129 Bing Ren, UCSD 4bbc5dba44005c0a1af73cfabe5fe707 SRA:SRR3651675 https://www.encodeproject.org/files/ENCFF002AOJ/@@download/ENCFF002AOJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQJ/ released inconsistent control read length ENCFF002AON fastq reads ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1620376368 Bing Ren, UCSD 768bc91f420f971c1889bec21bef1330 SRA:SRR3651676 https://www.encodeproject.org/files/ENCFF002AON/@@download/ENCFF002AON.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQI/ released inconsistent control read length ENCFF065SSR bam alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AON, ENCFF806TVZ 1331170688 ENCODE Processing Pipeline be4359618cfaf339b8bffff26bbea8d6 https://www.encodeproject.org/files/ENCFF065SSR/@@download/ENCFF065SSR.bam mm10-minimal archived ENCFF762ZDM bam alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOJ, ENCFF806TVZ 1277365854 ENCODE Processing Pipeline a3acd99244e9f34dbaef3fbbaaa4bb0e https://www.encodeproject.org/files/ENCFF762ZDM/@@download/ENCFF762ZDM.bam mm10-minimal archived ENCFF773EJO bed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF762ZDM, ENCFF991ANF 885478 ENCODE Processing Pipeline 2ba336f4a4ce531f9139ce6d055df817 https://www.encodeproject.org/files/ENCFF773EJO/@@download/ENCFF773EJO.bed.gz mm10-minimal archived ENCFF324KHH bigBed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF636YIX 2400459 ENCODE Processing Pipeline 7cfa37cf1169b8e1a11f13b66f59bcd9 https://www.encodeproject.org/files/ENCFF324KHH/@@download/ENCFF324KHH.bigBed mm10-minimal archived ENCFF852ELT bigBed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF773EJO 2190937 ENCODE Processing Pipeline b2e141f4c148852fe7e5a2a74e85f8c6 https://www.encodeproject.org/files/ENCFF852ELT/@@download/ENCFF852ELT.bigBed mm10-minimal archived ENCFF636YIX bed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF065SSR, ENCFF271DZZ, ENCFF991ANF 989322 ENCODE Processing Pipeline b67330b988fafb119b15da573578c970 https://www.encodeproject.org/files/ENCFF636YIX/@@download/ENCFF636YIX.bed.gz mm10-minimal archived ENCFF621FYL bed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF065SSR, ENCFF271DZZ, ENCFF762ZDM, ENCFF991ANF 794533 ENCODE Processing Pipeline 385ff2f54ac87c643e8c2c053b3afbbd https://www.encodeproject.org/files/ENCFF621FYL/@@download/ENCFF621FYL.bed.gz mm10-minimal archived ENCFF507RUK bigBed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF621FYL 2434208 ENCODE Processing Pipeline 47fc6ec42da253a9af82abac314f84c9 https://www.encodeproject.org/files/ENCFF507RUK/@@download/ENCFF507RUK.bigBed mm10-minimal archived ENCFF293MGT bigWig signal p-value ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF762ZDM, ENCFF991ANF 449021828 ENCODE Processing Pipeline 5faec288fcdff7e65a9bc7bcdb9ac75e https://www.encodeproject.org/files/ENCFF293MGT/@@download/ENCFF293MGT.bigWig mm10-minimal archived ENCFF399OCT bigWig signal p-value ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF065SSR, ENCFF271DZZ, ENCFF991ANF 514494826 ENCODE Processing Pipeline bf1328c6160a04a1b4e75292c8d163c8 https://www.encodeproject.org/files/ENCFF399OCT/@@download/ENCFF399OCT.bigWig mm10-minimal archived ENCFF520OAN bigWig signal p-value ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF065SSR, ENCFF271DZZ, ENCFF762ZDM, ENCFF991ANF 735126164 ENCODE Processing Pipeline 7665cff39b93bbfd8f698206166bd590 https://www.encodeproject.org/files/ENCFF520OAN/@@download/ENCFF520OAN.bigWig mm10-minimal archived ENCFF487RYC bigWig fold change over control ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF271DZZ, ENCFF762ZDM, ENCFF991ANF 532715965 ENCODE Processing Pipeline 437d805403ec4136fab349bcd9499557 https://www.encodeproject.org/files/ENCFF487RYC/@@download/ENCFF487RYC.bigWig mm10-minimal archived ENCFF950YSJ bigWig fold change over control ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF065SSR, ENCFF271DZZ, ENCFF991ANF 551813089 ENCODE Processing Pipeline 5b0a6d29161a5d18d6bc8fe15daebb93 https://www.encodeproject.org/files/ENCFF950YSJ/@@download/ENCFF950YSJ.bigWig mm10-minimal archived ENCFF065LTL bigWig fold change over control ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF065SSR, ENCFF271DZZ, ENCFF762ZDM, ENCFF991ANF 849716643 ENCODE Processing Pipeline 4a1892bb3c906b25149aa6463570f15e https://www.encodeproject.org/files/ENCFF065LTL/@@download/ENCFF065LTL.bigWig mm10-minimal archived ENCFF141YDN bed narrowPeak replicated peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF621FYL, ENCFF636YIX, ENCFF773EJO 723614 ENCODE Processing Pipeline f6b76a9bc121a01050070bf1d3d11fe5 https://www.encodeproject.org/files/ENCFF141YDN/@@download/ENCFF141YDN.bed.gz mm10-minimal archived ENCFF546MOB bigBed narrowPeak replicated peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF141YDN 1792646 ENCODE Processing Pipeline 761ac267b2dabc805b4a22df15bafa0c https://www.encodeproject.org/files/ENCFF546MOB/@@download/ENCFF546MOB.bigBed mm10-minimal archived ENCFF690GUB bam unfiltered alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AON, ENCFF018NEO 1438247316 ENCODE Processing Pipeline 48ecdec9f1f05ee1932f08a6c550c118 https://www.encodeproject.org/files/ENCFF690GUB/@@download/ENCFF690GUB.bam mm10 released ENCFF900FRN bam alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AON, ENCFF018NEO 1036324167 ENCODE Processing Pipeline 48bc1915ae135a0eb7eacb8d7c193f3f https://www.encodeproject.org/files/ENCFF900FRN/@@download/ENCFF900FRN.bam mm10 released ENCFF160VOR bam unfiltered alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOJ, ENCFF018NEO 1404523417 ENCODE Processing Pipeline ff6779288d2f115e9a8aa6e6415055ff https://www.encodeproject.org/files/ENCFF160VOR/@@download/ENCFF160VOR.bam mm10 released ENCFF119JGF bam alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOJ, ENCFF018NEO 990751324 ENCODE Processing Pipeline 818fc92db757dd4184d1f1580b51a420 https://www.encodeproject.org/files/ENCFF119JGF/@@download/ENCFF119JGF.bam mm10 released ENCFF538JMR bed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF119JGF, ENCFF688CVA, ENCFF945UFA 871168 ENCODE Processing Pipeline c79ddafc7f9c509a90439ee0c1d34817 https://www.encodeproject.org/files/ENCFF538JMR/@@download/ENCFF538JMR.bed.gz mm10 released ENCFF891ZOC bigBed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF538JMR 2160525 ENCODE Processing Pipeline 957c30aad6f32a1d50926839bed1b79a https://www.encodeproject.org/files/ENCFF891ZOC/@@download/ENCFF891ZOC.bigBed mm10 released ENCFF110TZQ bigBed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319YTS 2290296 ENCODE Processing Pipeline d2a71db1784966bc97819f2e04227069 https://www.encodeproject.org/files/ENCFF110TZQ/@@download/ENCFF110TZQ.bigBed mm10 released ENCFF319YTS bed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF900FRN, ENCFF945UFA 936876 ENCODE Processing Pipeline d5fbeddc89deaaa2f20a72900d0d1c97 https://www.encodeproject.org/files/ENCFF319YTS/@@download/ENCFF319YTS.bed.gz mm10 released ENCFF168AQK bed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF119JGF, ENCFF688CVA, ENCFF900FRN, ENCFF945UFA 789049 ENCODE Processing Pipeline 0849c47bfc2ef23071b955034cdd5c0a https://www.encodeproject.org/files/ENCFF168AQK/@@download/ENCFF168AQK.bed.gz mm10 released ENCFF759KRI bigBed narrowPeak peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF168AQK 2415406 ENCODE Processing Pipeline 51913fb1300b5212e7e7973a160bfc6a https://www.encodeproject.org/files/ENCFF759KRI/@@download/ENCFF759KRI.bigBed mm10 released ENCFF805NHF bigWig signal p-value ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF119JGF, ENCFF688CVA, ENCFF945UFA 462379910 ENCODE Processing Pipeline 82a5a696abcf6cf11c0081b058c18c5d https://www.encodeproject.org/files/ENCFF805NHF/@@download/ENCFF805NHF.bigWig mm10 released ENCFF872FTU bigWig signal p-value ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF900FRN, ENCFF945UFA 456497885 ENCODE Processing Pipeline b5135486d5bf66b10c7635c5636165fa https://www.encodeproject.org/files/ENCFF872FTU/@@download/ENCFF872FTU.bigWig mm10 released ENCFF905RDC bigWig signal p-value ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF119JGF, ENCFF688CVA, ENCFF900FRN, ENCFF945UFA 726139892 ENCODE Processing Pipeline 0d0c4e5618dc26fb3ebed1c2faeb2e6f https://www.encodeproject.org/files/ENCFF905RDC/@@download/ENCFF905RDC.bigWig mm10 released ENCFF198ZSF bigWig fold change over control ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF119JGF, ENCFF688CVA, ENCFF945UFA 520411673 ENCODE Processing Pipeline 62a012bcfe8871e012201d37c377a06f https://www.encodeproject.org/files/ENCFF198ZSF/@@download/ENCFF198ZSF.bigWig mm10 released ENCFF262YNZ bigWig fold change over control ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF688CVA, ENCFF900FRN, ENCFF945UFA 535346656 ENCODE Processing Pipeline 711b2970ac8d248aeae8c5ebf87ed9d1 https://www.encodeproject.org/files/ENCFF262YNZ/@@download/ENCFF262YNZ.bigWig mm10 released ENCFF610GUY bigWig fold change over control ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF119JGF, ENCFF688CVA, ENCFF900FRN, ENCFF945UFA 818053215 ENCODE Processing Pipeline c3504549d0fc065451efcf9b53c34934 https://www.encodeproject.org/files/ENCFF610GUY/@@download/ENCFF610GUY.bigWig mm10 released ENCFF060CAF bigBed narrowPeak replicated peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF938JRH 1764250 ENCODE Processing Pipeline a9ef5d1bb6eaf46421189cc246b21532 https://www.encodeproject.org/files/ENCFF060CAF/@@download/ENCFF060CAF.bigBed mm10 released ENCFF938JRH bed narrowPeak replicated peaks ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF168AQK, ENCFF319YTS, ENCFF538JMR 713127 ENCODE Processing Pipeline 421081e5733d39460df85a14bdd92aa3 https://www.encodeproject.org/files/ENCFF938JRH/@@download/ENCFF938JRH.bed.gz mm10 released ENCFF996MWJ fastq reads ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 591216480 Michael Snyder, Stanford 3987c43c487558b8920afee429b62517 https://www.encodeproject.org/files/ENCFF996MWJ/@@download/ENCFF996MWJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF907HUT bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF996MWJ 540844272 Michael Snyder, Stanford fd6570e31b799f7666da97f155a102ab https://www.encodeproject.org/files/ENCFF907HUT/@@download/ENCFF907HUT.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF286XMC bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF550MZG 853756212 Michael Snyder, Stanford 15fe55a6f5bdef7143d2c23ffd5816be https://www.encodeproject.org/files/ENCFF286XMC/@@download/ENCFF286XMC.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF316CSW bed narrowPeak peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF286XMC, ENCFF907HUT 336665 Michael Snyder, Stanford 2043b4b88323b148c288ac0aca3df2ec https://www.encodeproject.org/files/ENCFF316CSW/@@download/ENCFF316CSW.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF550MZG fastq reads ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 854969794 Michael Snyder, Stanford d464f0e8c09eb281eb356342fcb29920 https://www.encodeproject.org/files/ENCFF550MZG/@@download/ENCFF550MZG.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF447VDV bigBed narrowPeak peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316CSW 710343 ENCODE Consortium c762a64107f47f28eac4bb7385e8c02c https://www.encodeproject.org/files/ENCFF447VDV/@@download/ENCFF447VDV.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF336SLK bam unfiltered alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF996MWJ 763616821 ENCODE Processing Pipeline 4984397f1bec64cbd7b7ccabffab2e13 https://www.encodeproject.org/files/ENCFF336SLK/@@download/ENCFF336SLK.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF225ILC bam unfiltered alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF550MZG 1167711935 ENCODE Processing Pipeline cd130a80805e4668c1eddb66ba188106 https://www.encodeproject.org/files/ENCFF225ILC/@@download/ENCFF225ILC.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF928UQF bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF996MWJ 394816691 ENCODE Processing Pipeline 29ec02c9c3704d56c043b35a490ba696 https://www.encodeproject.org/files/ENCFF928UQF/@@download/ENCFF928UQF.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF572FAR bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF550MZG 662970548 ENCODE Processing Pipeline 41118fc6c594c3cdfb4b1fc7805ae14f https://www.encodeproject.org/files/ENCFF572FAR/@@download/ENCFF572FAR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF569LXK bed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF572FAR, ENCFF928UQF 2910114 ENCODE Processing Pipeline 4daffb7bc1a10c2eb6e4f9e25b4edc20 https://www.encodeproject.org/files/ENCFF569LXK/@@download/ENCFF569LXK.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF487MRD bigWig signal p-value ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF572FAR 281959646 ENCODE Processing Pipeline cbaee38a78cdb9bb656333afb140fd1a https://www.encodeproject.org/files/ENCFF487MRD/@@download/ENCFF487MRD.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF562POX bigWig fold change over control ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF928UQF 200478623 ENCODE Processing Pipeline 752b34de15fc3ea5151ce196087c3d91 https://www.encodeproject.org/files/ENCFF562POX/@@download/ENCFF562POX.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF546TIA bigWig fold change over control ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF572FAR 276198047 ENCODE Processing Pipeline 320d53cbacf3cd7cbc4ebef53062e218 https://www.encodeproject.org/files/ENCFF546TIA/@@download/ENCFF546TIA.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF156OSF bed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF928UQF 4567246 ENCODE Processing Pipeline e7fed781c7c9bebe61090b8452e36d4e https://www.encodeproject.org/files/ENCFF156OSF/@@download/ENCFF156OSF.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF313EEA bigBed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF364BAN 10676208 ENCODE Processing Pipeline f0a7af45e0d6c718bd6c1a30ee4ba75b https://www.encodeproject.org/files/ENCFF313EEA/@@download/ENCFF313EEA.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF611EIH bigWig signal p-value ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF572FAR, ENCFF928UQF 301693538 ENCODE Processing Pipeline 10b217faa784ea8a2ddc50b0b05f1ad7 https://www.encodeproject.org/files/ENCFF611EIH/@@download/ENCFF611EIH.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF364BAN bed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF572FAR 4897484 ENCODE Processing Pipeline 6aae20c7b5f8694200fefa6915e9591c https://www.encodeproject.org/files/ENCFF364BAN/@@download/ENCFF364BAN.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF772EUC bed narrowPeak conservative idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF156OSF, ENCFF364BAN, ENCFF547MET, ENCFF569LXK 287140 ENCODE Processing Pipeline 21f6208ad1ec0da967b77475b5b9f0f0 https://www.encodeproject.org/files/ENCFF772EUC/@@download/ENCFF772EUC.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF305UAP bigWig signal p-value ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF928UQF 242151149 ENCODE Processing Pipeline 011b2c3ff8c7ec357312126a976b72de https://www.encodeproject.org/files/ENCFF305UAP/@@download/ENCFF305UAP.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF377WET bigWig fold change over control ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF572FAR, ENCFF928UQF 397517224 ENCODE Processing Pipeline 0e67dcbf5431731e7c0f5750944ac577 https://www.encodeproject.org/files/ENCFF377WET/@@download/ENCFF377WET.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF211XRB bigBed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF569LXK 6636616 ENCODE Processing Pipeline 19a96f0ae200c40e548be9ed6101aaea https://www.encodeproject.org/files/ENCFF211XRB/@@download/ENCFF211XRB.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF184NNZ bigBed narrowPeak peaks and background as input for IDR ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF156OSF 10210451 ENCODE Processing Pipeline 28bc99a47a651b00081b8e91e32bc532 https://www.encodeproject.org/files/ENCFF184NNZ/@@download/ENCFF184NNZ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF987ZSZ bed narrowPeak optimal idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF156OSF, ENCFF364BAN, ENCFF547MET, ENCFF569LXK 324326 ENCODE Processing Pipeline a48391f80ec9ed24eb322566535fedab https://www.encodeproject.org/files/ENCFF987ZSZ/@@download/ENCFF987ZSZ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF960GZI bigBed narrowPeak conservative idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF772EUC 546612 ENCODE Processing Pipeline 86913c26c3adc244a9ff169aeda1532c https://www.encodeproject.org/files/ENCFF960GZI/@@download/ENCFF960GZI.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF176FJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF987ZSZ 599475 ENCODE Processing Pipeline 26b2789586d11eca16daa7f5b2005678 https://www.encodeproject.org/files/ENCFF176FJQ/@@download/ENCFF176FJQ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF002ESK fastq reads ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 326981222 Bing Ren, UCSD 78b20ff18ecb574085978aa13b78af4d SRA:SRR3653295 https://www.encodeproject.org/files/ENCFF002ESK/@@download/ENCFF002ESK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYB/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESU fastq reads ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1266113175 Bing Ren, UCSD f8e513b7e6ebc2290a747196761cc698 SRA:SRR3653297 https://www.encodeproject.org/files/ENCFF002ESU/@@download/ENCFF002ESU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYC/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF418CQB bam alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESU, ENCFF806TVZ 1064451751 ENCODE Processing Pipeline 2a7b9b471ece4c141362b183880239be https://www.encodeproject.org/files/ENCFF418CQB/@@download/ENCFF418CQB.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF327XTQ fastq reads ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 1070516439 Bing Ren, UCSD e6bc2307350e354f7cccd667041c5aa4 SRA:SRR3653296 https://www.encodeproject.org/files/ENCFF327XTQ/@@download/ENCFF327XTQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYB/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF094BMF bam alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESK, ENCFF327XTQ, ENCFF806TVZ 1214599590 ENCODE Processing Pipeline 29ba13ce2492acb26db370b9a06c58ee https://www.encodeproject.org/files/ENCFF094BMF/@@download/ENCFF094BMF.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF199DGN bed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF418CQB, ENCFF783YRC 953030 ENCODE Processing Pipeline 3dd48a3319eb6aa76b0b8de96f59c4aa https://www.encodeproject.org/files/ENCFF199DGN/@@download/ENCFF199DGN.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF534VEH bed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF094BMF, ENCFF141POR, ENCFF783YRC 557573 ENCODE Processing Pipeline e9e22fe39fd3a806aa0181de0698c6a6 https://www.encodeproject.org/files/ENCFF534VEH/@@download/ENCFF534VEH.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF568JWF bigWig signal p-value ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF094BMF, ENCFF141POR, ENCFF783YRC 613700458 ENCODE Processing Pipeline 2df952e691383e52de0504fa034d259e https://www.encodeproject.org/files/ENCFF568JWF/@@download/ENCFF568JWF.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF425FRQ bigWig signal p-value ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF418CQB, ENCFF783YRC 702041397 ENCODE Processing Pipeline 91313ed63a14b00fb11e4c11a07f1158 https://www.encodeproject.org/files/ENCFF425FRQ/@@download/ENCFF425FRQ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF577ITH bed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF094BMF, ENCFF141POR, ENCFF418CQB, ENCFF783YRC 845468 ENCODE Processing Pipeline 0885817102354f12974ebae26713a005 https://www.encodeproject.org/files/ENCFF577ITH/@@download/ENCFF577ITH.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF243TGK bigBed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF199DGN 2185326 ENCODE Processing Pipeline 9bdcb00a3d75ad7221b91c6506987f58 https://www.encodeproject.org/files/ENCFF243TGK/@@download/ENCFF243TGK.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF853LXT bigBed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF534VEH 1354837 ENCODE Processing Pipeline 3064bac98337612c238244d18fa17f7a https://www.encodeproject.org/files/ENCFF853LXT/@@download/ENCFF853LXT.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF178UGW bigWig signal p-value ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF094BMF, ENCFF141POR, ENCFF418CQB, ENCFF783YRC 937777541 ENCODE Processing Pipeline 3b1efef83b2f2ee7da2d6b5eadd5b78d https://www.encodeproject.org/files/ENCFF178UGW/@@download/ENCFF178UGW.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF567FBS bigBed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF577ITH 1894470 ENCODE Processing Pipeline e0890c4c0bee7e53a33d90e9a128a158 https://www.encodeproject.org/files/ENCFF567FBS/@@download/ENCFF567FBS.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF667AQZ bigWig fold change over control ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF094BMF, ENCFF141POR, ENCFF783YRC 627011825 ENCODE Processing Pipeline bc5794a28c425a8cb2519a9639013fb4 https://www.encodeproject.org/files/ENCFF667AQZ/@@download/ENCFF667AQZ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF556IPE bigWig fold change over control ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF141POR, ENCFF418CQB, ENCFF783YRC 627956135 ENCODE Processing Pipeline 8a2e40fe7174bf6d37b976dec501b27a https://www.encodeproject.org/files/ENCFF556IPE/@@download/ENCFF556IPE.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF388PUB bigBed narrowPeak replicated peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF081WDW 1033786 ENCODE Processing Pipeline 481e63b522d14c7c37c9f58bbea74b08 https://www.encodeproject.org/files/ENCFF388PUB/@@download/ENCFF388PUB.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF833EQK bigWig fold change over control ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF094BMF, ENCFF141POR, ENCFF418CQB, ENCFF783YRC 935614661 ENCODE Processing Pipeline 41a7600381e433b9cb69c5ccf055be6d https://www.encodeproject.org/files/ENCFF833EQK/@@download/ENCFF833EQK.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF081WDW bed narrowPeak replicated peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF199DGN, ENCFF534VEH, ENCFF577ITH 431124 ENCODE Processing Pipeline 734985d19b422c8632f7007917ed410e https://www.encodeproject.org/files/ENCFF081WDW/@@download/ENCFF081WDW.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF574WAM bam unfiltered alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESK, ENCFF018NEO, ENCFF327XTQ 1503559308 ENCODE Processing Pipeline e8166d58b561631afe571a9dbbefe67e https://www.encodeproject.org/files/ENCFF574WAM/@@download/ENCFF574WAM.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF977ZUS bam unfiltered alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESU, ENCFF018NEO 1623004951 ENCODE Processing Pipeline 05ab427f012e9accc1b3614a50c3736a https://www.encodeproject.org/files/ENCFF977ZUS/@@download/ENCFF977ZUS.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF962LTG bam alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESK, ENCFF018NEO, ENCFF327XTQ 991457328 ENCODE Processing Pipeline 798ca802a7e572d22b8e1a0712452b39 https://www.encodeproject.org/files/ENCFF962LTG/@@download/ENCFF962LTG.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF821RRY bam alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESU, ENCFF018NEO 1064175793 ENCODE Processing Pipeline 39b6dc4d1752d6aea21fda590d9b9065 https://www.encodeproject.org/files/ENCFF821RRY/@@download/ENCFF821RRY.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF625GIB bed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF962LTG 718418 ENCODE Processing Pipeline 612f66afe23a049a65e375dd79d77499 https://www.encodeproject.org/files/ENCFF625GIB/@@download/ENCFF625GIB.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF334DWW bed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF821RRY 620466 ENCODE Processing Pipeline a66f2c13de96bc3672fddd7597cc587e https://www.encodeproject.org/files/ENCFF334DWW/@@download/ENCFF334DWW.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF882VQK bed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF821RRY, ENCFF962LTG 742014 ENCODE Processing Pipeline 74d76a57e48d0a7be03e83296c70662e https://www.encodeproject.org/files/ENCFF882VQK/@@download/ENCFF882VQK.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF707RKM bigBed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF625GIB 1768728 ENCODE Processing Pipeline fc8753ec41a60fc757f56d7214801271 https://www.encodeproject.org/files/ENCFF707RKM/@@download/ENCFF707RKM.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF282XTV bigBed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF334DWW 1438948 ENCODE Processing Pipeline 94ce74496050442a58514b291359277d https://www.encodeproject.org/files/ENCFF282XTV/@@download/ENCFF282XTV.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF235HTX bigBed narrowPeak peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF882VQK 2079988 ENCODE Processing Pipeline 797cf00b7027a3eb7f621462d87be659 https://www.encodeproject.org/files/ENCFF235HTX/@@download/ENCFF235HTX.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF547FUS bigWig signal p-value ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF962LTG 562994006 ENCODE Processing Pipeline 7b5f0e48003c7ede491e4e1247b3cd8c https://www.encodeproject.org/files/ENCFF547FUS/@@download/ENCFF547FUS.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF363BTW bigWig signal p-value ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF821RRY 471387701 ENCODE Processing Pipeline 0d3562007b8639d6c650c894b382b725 https://www.encodeproject.org/files/ENCFF363BTW/@@download/ENCFF363BTW.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF988EGR bigWig signal p-value ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF821RRY, ENCFF962LTG 926129021 ENCODE Processing Pipeline 7b6feeb6b082e9bc699f9b5b732d8d75 https://www.encodeproject.org/files/ENCFF988EGR/@@download/ENCFF988EGR.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF940WFV bigWig fold change over control ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF658UBJ, ENCFF962LTG 618377752 ENCODE Processing Pipeline 5c0bb31944e8159528331c77a857aadd https://www.encodeproject.org/files/ENCFF940WFV/@@download/ENCFF940WFV.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF344IXK bigWig fold change over control ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF821RRY 467953524 ENCODE Processing Pipeline d009248a17e1640b6b76e14041c8c55a https://www.encodeproject.org/files/ENCFF344IXK/@@download/ENCFF344IXK.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF039QOO bigWig fold change over control ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF658UBJ, ENCFF821RRY, ENCFF962LTG 928212585 ENCODE Processing Pipeline 725ebf7c48bcbb9ad5825a36fdd22935 https://www.encodeproject.org/files/ENCFF039QOO/@@download/ENCFF039QOO.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF054GDC bed narrowPeak replicated peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF334DWW, ENCFF625GIB, ENCFF882VQK 370336 ENCODE Processing Pipeline 5ed6d391f16510d5fbb5d2754fe4498c https://www.encodeproject.org/files/ENCFF054GDC/@@download/ENCFF054GDC.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF155GIM bigBed narrowPeak replicated peaks ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF054GDC 895786 ENCODE Processing Pipeline d56e070d4fcc344af09cdb1881f4d7d2 https://www.encodeproject.org/files/ENCFF155GIM/@@download/ENCFF155GIM.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DSC fastq reads ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 36 single-ended 886100793 Bing Ren, UCSD 377af10996465929d0b1607d25b5a5ad SRA:SRR3653357 https://www.encodeproject.org/files/ENCFF002DSC/@@download/ENCFF002DSC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQS/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSD fastq reads ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 36 single-ended 815232125 Bing Ren, UCSD 08597c3c8fee47b38d25b9ea16c0a5b9 SRA:SRR3653358 https://www.encodeproject.org/files/ENCFF002DSD/@@download/ENCFF002DSD.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQS/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSG fastq reads ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 2 36 single-ended 1009645094 Bing Ren, UCSD 1641bbd885f9ec4a027bb641ae826012 SRA:SRR3653355 https://www.encodeproject.org/files/ENCFF002DSG/@@download/ENCFF002DSG.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQU/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF002DSH fastq reads ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 36 single-ended 1217519743 Bing Ren, UCSD 98bc4fda3bb50d5deb3f8caeeba3b562 SRA:SRR3653356 https://www.encodeproject.org/files/ENCFF002DSH/@@download/ENCFF002DSH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQU/ released low read length, inconsistent control read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF393DLH bam alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002DSC, ENCFF002DSD, ENCFF806TVZ 908786638 ENCODE Processing Pipeline f62638061147344704926414635f6774 https://www.encodeproject.org/files/ENCFF393DLH/@@download/ENCFF393DLH.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF150JJI bam alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002DSG, ENCFF002DSH, ENCFF806TVZ 1110163078 ENCODE Processing Pipeline c52cc02e85b0933bf10857372bfbbd48 https://www.encodeproject.org/files/ENCFF150JJI/@@download/ENCFF150JJI.bam mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF621TDF bed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF150JJI, ENCFF720UVE 639705 ENCODE Processing Pipeline 97594286ef0b4529508c03437080b6ae https://www.encodeproject.org/files/ENCFF621TDF/@@download/ENCFF621TDF.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF695NLT bed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF150JJI, ENCFF393DLH, ENCFF720UVE, ENCFF977HMC 1208141 ENCODE Processing Pipeline eb556fd91fe962758a58831694d8aa65 https://www.encodeproject.org/files/ENCFF695NLT/@@download/ENCFF695NLT.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF417JGK bed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF393DLH, ENCFF977HMC 772249 ENCODE Processing Pipeline 481825e9fda989a0d9ef662adf62b2c6 https://www.encodeproject.org/files/ENCFF417JGK/@@download/ENCFF417JGK.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF355XFA bigBed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF621TDF 1477476 ENCODE Processing Pipeline a59eeafc37db152ef4800e4fd31c3ba4 https://www.encodeproject.org/files/ENCFF355XFA/@@download/ENCFF355XFA.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF203JRS bigBed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF417JGK 1374737 ENCODE Processing Pipeline eb041b61a38e53cdefca9f5b7bdba8d9 https://www.encodeproject.org/files/ENCFF203JRS/@@download/ENCFF203JRS.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF543OYC bigBed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF695NLT 2484086 ENCODE Processing Pipeline 9012ce53744619f539b1b7884250e7c7 https://www.encodeproject.org/files/ENCFF543OYC/@@download/ENCFF543OYC.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF230AIH bigWig signal p-value ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF393DLH, ENCFF977HMC 449435065 ENCODE Processing Pipeline 8fc56ff7a10f75457411c77498e5cceb https://www.encodeproject.org/files/ENCFF230AIH/@@download/ENCFF230AIH.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF052LVM bigWig signal p-value ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF150JJI, ENCFF720UVE 461680113 ENCODE Processing Pipeline bf3ecb54b0d6fdefce46d411deca0f1f https://www.encodeproject.org/files/ENCFF052LVM/@@download/ENCFF052LVM.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF179OQD bigWig signal p-value ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF150JJI, ENCFF393DLH, ENCFF720UVE, ENCFF977HMC 846972675 ENCODE Processing Pipeline 853f8a5c78b1692a1b68324119dbc0bf https://www.encodeproject.org/files/ENCFF179OQD/@@download/ENCFF179OQD.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF287QMB bigWig fold change over control ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF393DLH, ENCFF977HMC 466187136 ENCODE Processing Pipeline da742fe8052d631e8f0dfaf67f74bb1c https://www.encodeproject.org/files/ENCFF287QMB/@@download/ENCFF287QMB.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF919JEZ bigWig fold change over control ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF150JJI, ENCFF720UVE 462891177 ENCODE Processing Pipeline c9df8543774145e0228e75f7626965c0 https://www.encodeproject.org/files/ENCFF919JEZ/@@download/ENCFF919JEZ.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF709XQP bigWig fold change over control ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF150JJI, ENCFF393DLH, ENCFF720UVE, ENCFF977HMC 916725733 ENCODE Processing Pipeline d7507c40720c6b174591bf5695729470 https://www.encodeproject.org/files/ENCFF709XQP/@@download/ENCFF709XQP.bigWig mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF940DTJ bed narrowPeak replicated peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF417JGK, ENCFF621TDF, ENCFF695NLT 358563 ENCODE Processing Pipeline 510745b50752c2918d7a0c18c0459e3b https://www.encodeproject.org/files/ENCFF940DTJ/@@download/ENCFF940DTJ.bed.gz mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF857KUG bigBed narrowPeak replicated peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF940DTJ 826995 ENCODE Processing Pipeline 8e7bb0700c210376bab014b5d08d9085 https://www.encodeproject.org/files/ENCFF857KUG/@@download/ENCFF857KUG.bigBed mm10-minimal archived low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF944HGV bam unfiltered alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSC, ENCFF002DSD, ENCFF018NEO 2160066510 ENCODE Processing Pipeline eb5381cb783db601422e45958494cf3e https://www.encodeproject.org/files/ENCFF944HGV/@@download/ENCFF944HGV.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF227CVH bam unfiltered alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSG, ENCFF002DSH, ENCFF018NEO 2794583625 ENCODE Processing Pipeline 3ce3dbff15ea3da4351e8721f3c85eca https://www.encodeproject.org/files/ENCFF227CVH/@@download/ENCFF227CVH.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF083UAF bam alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSC, ENCFF002DSD, ENCFF018NEO 908262764 ENCODE Processing Pipeline 43c8106d58ad08366bda1df4adaa1e2f https://www.encodeproject.org/files/ENCFF083UAF/@@download/ENCFF083UAF.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF406TMT bam alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSG, ENCFF002DSH, ENCFF018NEO 1109577760 ENCODE Processing Pipeline 24a7f5ce4d7148f1d9c7292e50c95925 https://www.encodeproject.org/files/ENCFF406TMT/@@download/ENCFF406TMT.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF528PPW bed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF083UAF, ENCFF322DCQ 800083 ENCODE Processing Pipeline acf332106b13bcf8f10a3315597ccf45 https://www.encodeproject.org/files/ENCFF528PPW/@@download/ENCFF528PPW.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF246XFB bed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF406TMT, ENCFF979XVT 655799 ENCODE Processing Pipeline 6879f6ac4f73fec3e4dc9071fdcd4a5f https://www.encodeproject.org/files/ENCFF246XFB/@@download/ENCFF246XFB.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF094YWS bed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF083UAF, ENCFF322DCQ, ENCFF406TMT, ENCFF979XVT 1241867 ENCODE Processing Pipeline 4919d6a42901b5e4d496dd5cc4758281 https://www.encodeproject.org/files/ENCFF094YWS/@@download/ENCFF094YWS.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF652NYY bigBed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF528PPW 1415058 ENCODE Processing Pipeline a1b0b0c3befbdbac114e59416551b8b5 https://www.encodeproject.org/files/ENCFF652NYY/@@download/ENCFF652NYY.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF699FDX bigBed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF246XFB 1510577 ENCODE Processing Pipeline e5a9d1ef5bdea16cd3b3812504f9beac https://www.encodeproject.org/files/ENCFF699FDX/@@download/ENCFF699FDX.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF350ATT bigBed narrowPeak peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF094YWS 2529421 ENCODE Processing Pipeline 1852c17b6a9676613b78916f3b78fef3 https://www.encodeproject.org/files/ENCFF350ATT/@@download/ENCFF350ATT.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF585UTY bigWig signal p-value ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF083UAF, ENCFF322DCQ 410328144 ENCODE Processing Pipeline b95223335e12144e7b3e1a120accff26 https://www.encodeproject.org/files/ENCFF585UTY/@@download/ENCFF585UTY.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF902OEU bigWig signal p-value ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF406TMT, ENCFF979XVT 414365899 ENCODE Processing Pipeline 6252fc556a701d603ba279cd3056cad1 https://www.encodeproject.org/files/ENCFF902OEU/@@download/ENCFF902OEU.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF069ILA bigWig signal p-value ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF083UAF, ENCFF322DCQ, ENCFF406TMT, ENCFF979XVT 925644181 ENCODE Processing Pipeline a780277a1ddb0e281f3b8f60c8d6f92a https://www.encodeproject.org/files/ENCFF069ILA/@@download/ENCFF069ILA.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF485MEK bigWig fold change over control ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF083UAF, ENCFF322DCQ 465438134 ENCODE Processing Pipeline 2b90a669fb43eaa832df72f89a270b59 https://www.encodeproject.org/files/ENCFF485MEK/@@download/ENCFF485MEK.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF199FPM bigWig fold change over control ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF406TMT, ENCFF979XVT 466202874 ENCODE Processing Pipeline 2d0edf16b1f1183f78a60fb818f51dd5 https://www.encodeproject.org/files/ENCFF199FPM/@@download/ENCFF199FPM.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF046SEF bigWig fold change over control ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF083UAF, ENCFF322DCQ, ENCFF406TMT, ENCFF979XVT 912789527 ENCODE Processing Pipeline 5fb12f1e8ee186bd5cdc64a61aa65016 https://www.encodeproject.org/files/ENCFF046SEF/@@download/ENCFF046SEF.bigWig mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF213FQB bed narrowPeak replicated peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF094YWS, ENCFF246XFB, ENCFF528PPW 364417 ENCODE Processing Pipeline 94029eb438cc617a7ef3b1bd643d27a5 https://www.encodeproject.org/files/ENCFF213FQB/@@download/ENCFF213FQB.bed.gz mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF317TPK bigBed narrowPeak replicated peaks ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF213FQB 834124 ENCODE Processing Pipeline 34f7c19bf21d770242789261ea0c94f7 https://www.encodeproject.org/files/ENCFF317TPK/@@download/ENCFF317TPK.bigBed mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF163AJI fastq reads ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 2565397737 Bing Ren, UCSD f63a4a003eb5873608ac75a3d9621187 SRA:SRR4235713 https://www.encodeproject.org/files/ENCFF163AJI/@@download/ENCFF163AJI.fastq.gz Illumina HiSeq 4000 released ENCFF524CAC fastq reads ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2322600462 Bing Ren, UCSD e6f56a5ac71a646a700505f8bf39061d SRA:SRR4235712 https://www.encodeproject.org/files/ENCFF524CAC/@@download/ENCFF524CAC.fastq.gz Illumina HiSeq 4000 released ENCFF978WXJ bam unfiltered alignments ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF524CAC 3198043106 ENCODE Processing Pipeline c0be457081aa9a0bdd2ddc70eeced2bb https://www.encodeproject.org/files/ENCFF978WXJ/@@download/ENCFF978WXJ.bam mm10 released ENCFF638JSP bam unfiltered alignments ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF163AJI 3516349552 ENCODE Processing Pipeline fd9ae58cc594734b8968eca92377e50f https://www.encodeproject.org/files/ENCFF638JSP/@@download/ENCFF638JSP.bam mm10 released ENCFF280XYK bam alignments ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF524CAC 2375050251 ENCODE Processing Pipeline d6d42b54bf044027e495d0d0345e425f https://www.encodeproject.org/files/ENCFF280XYK/@@download/ENCFF280XYK.bam mm10 released ENCFF531DRS bam alignments ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF163AJI 2597884851 ENCODE Processing Pipeline acd15a935f0aed301682cec970380b06 https://www.encodeproject.org/files/ENCFF531DRS/@@download/ENCFF531DRS.bam mm10 released ENCFF001LGX bigBed broadPeak peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE ENCFF001XZX 344110 Bing Ren, UCSD 22f89fa4721b138567988313ec4d52b3 https://www.encodeproject.org/files/ENCFF001LGX/@@download/ENCFF001LGX.bigBed mm9 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF001LGY bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LHI 952323923 Bing Ren, UCSD dbd0a80ab54d71eb20205ac9ff36f808 https://www.encodeproject.org/files/ENCFF001LGY/@@download/ENCFF001LGY.bam mm9 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF001LGZ bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LHL 1661864633 Bing Ren, UCSD 03e08a53e4905078e899e212849bf3df https://www.encodeproject.org/files/ENCFF001LGZ/@@download/ENCFF001LGZ.bam mm9 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF001LHA bigWig signal ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 67818976 Bing Ren, UCSD 682d03928b2645be9b248a56c3a0c1d7 https://www.encodeproject.org/files/ENCFF001LHA/@@download/ENCFF001LHA.bigWig mm9 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth missing derived_from ENCFF001LHI fastq reads ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 931311629 Bing Ren, UCSD 2da0411c22b9393055d1d41ffb68de45 https://www.encodeproject.org/files/ENCFF001LHI/@@download/ENCFF001LHI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZL/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF001LHL fastq reads ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1614279285 Bing Ren, UCSD f439aa5b05e0aca8762219fe1fe1b77b https://www.encodeproject.org/files/ENCFF001LHL/@@download/ENCFF001LHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZE/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF001XZX bed broadPeak peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 239102 Bing Ren, UCSD 79ec13c5468c7b41a276538b9cf8ed11 https://www.encodeproject.org/files/ENCFF001XZX/@@download/ENCFF001XZX.bed.gz mm9 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth missing derived_from ENCFF309PSI bam unfiltered alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LHL, ENCFF018NEO 1793005027 ENCODE Processing Pipeline 9bae2125dcc424cc277f2d4c95ad67a3 https://www.encodeproject.org/files/ENCFF309PSI/@@download/ENCFF309PSI.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF536DIG bam unfiltered alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LHI, ENCFF018NEO 1032191950 ENCODE Processing Pipeline cf2d868d1b62943b3c8b66441de97e0b https://www.encodeproject.org/files/ENCFF536DIG/@@download/ENCFF536DIG.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF114YOO bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LHI, ENCFF018NEO 613018324 ENCODE Processing Pipeline 3cb74e6a5af792806b9bbd11fd8828b5 https://www.encodeproject.org/files/ENCFF114YOO/@@download/ENCFF114YOO.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF257JDR bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LHL, ENCFF018NEO 1144350393 ENCODE Processing Pipeline 782de749288fac892aa26cd36ca5e195 https://www.encodeproject.org/files/ENCFF257JDR/@@download/ENCFF257JDR.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF257CJH bigWig signal p-value ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF114YOO, ENCFF380RIM, ENCFF436OKP 416718786 ENCODE Processing Pipeline 942d4380522bffcbbec06e7124aa3da9 https://www.encodeproject.org/files/ENCFF257CJH/@@download/ENCFF257CJH.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF580WJW bigWig signal p-value ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF114YOO, ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 523224684 ENCODE Processing Pipeline 14daed9cdd4e4c4c6bbfb0cb74cf4e57 https://www.encodeproject.org/files/ENCFF580WJW/@@download/ENCFF580WJW.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF105OGD bed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF114YOO, ENCFF380RIM, ENCFF436OKP 4658333 ENCODE Processing Pipeline 0228a70054ec42866a4990039c920e4f https://www.encodeproject.org/files/ENCFF105OGD/@@download/ENCFF105OGD.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF593FDX bed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF114YOO, ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 6251360 ENCODE Processing Pipeline a46da241edb4f2dfd7d6bacfa83f836a https://www.encodeproject.org/files/ENCFF593FDX/@@download/ENCFF593FDX.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF250IBP bigWig fold change over control ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF114YOO, ENCFF380RIM, ENCFF436OKP 301257801 ENCODE Processing Pipeline d06e8a5eb2500b3a3921611e02404deb https://www.encodeproject.org/files/ENCFF250IBP/@@download/ENCFF250IBP.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF705BHR bed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 5578179 ENCODE Processing Pipeline f99183048abdeab0a6282b443ed4bdd7 https://www.encodeproject.org/files/ENCFF705BHR/@@download/ENCFF705BHR.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF884VJT bigBed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF705BHR 10956363 ENCODE Processing Pipeline 8cabdc71b87a51881786f3b5f0c9f529 https://www.encodeproject.org/files/ENCFF884VJT/@@download/ENCFF884VJT.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF641OBW bigBed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF105OGD 10609903 ENCODE Processing Pipeline a00425b144aa63f5ef0c0febb494ceaa https://www.encodeproject.org/files/ENCFF641OBW/@@download/ENCFF641OBW.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF760SNT bigWig signal p-value ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 510144790 ENCODE Processing Pipeline e14938f27288c8937538bd5851768ed4 https://www.encodeproject.org/files/ENCFF760SNT/@@download/ENCFF760SNT.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF480ACU bigWig fold change over control ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 451466858 ENCODE Processing Pipeline 2cf726ba3edc5534c5466b286ff4375c https://www.encodeproject.org/files/ENCFF480ACU/@@download/ENCFF480ACU.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF575UNY bigWig fold change over control ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF114YOO, ENCFF257JDR, ENCFF380RIM, ENCFF436OKP 616158195 ENCODE Processing Pipeline 4d07ef90b24489d400375e5f3149edcd https://www.encodeproject.org/files/ENCFF575UNY/@@download/ENCFF575UNY.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF239DWZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF593FDX 10916865 ENCODE Processing Pipeline 223c5583a9bdc2b0aed211624c48a7d6 https://www.encodeproject.org/files/ENCFF239DWZ/@@download/ENCFF239DWZ.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF874KZS bed narrowPeak optimal idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF105OGD, ENCFF547MET, ENCFF593FDX, ENCFF705BHR 67370 ENCODE Processing Pipeline 2fb03acd7c9db55b8f7525ceb9ffca4b https://www.encodeproject.org/files/ENCFF874KZS/@@download/ENCFF874KZS.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF758SNP bed narrowPeak conservative idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF105OGD, ENCFF547MET, ENCFF593FDX, ENCFF705BHR 64299 ENCODE Processing Pipeline 16367c6d900b881ce76ec2b3ead4e730 https://www.encodeproject.org/files/ENCFF758SNP/@@download/ENCFF758SNP.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF975NBR bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF758SNP 154970 ENCODE Processing Pipeline 04539a72b7ca6de2b8ef9a4604a05750 https://www.encodeproject.org/files/ENCFF975NBR/@@download/ENCFF975NBR.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF337PGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF874KZS 159116 ENCODE Processing Pipeline 8a481769d58d30f2516eb5c408f333f5 https://www.encodeproject.org/files/ENCFF337PGT/@@download/ENCFF337PGT.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF302OTZ fastq reads ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 738913403 Michael Snyder, Stanford 2a2f835186cc379faa817dcd5e0e1865 https://www.encodeproject.org/files/ENCFF302OTZ/@@download/ENCFF302OTZ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF825QPA fastq reads ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 618967114 Michael Snyder, Stanford c00d819464e6eacb244d08989c29c7ca https://www.encodeproject.org/files/ENCFF825QPA/@@download/ENCFF825QPA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF379OHH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF825QPA 623177547 Michael Snyder, Stanford 96b22d83af44ee2032a1151458749a21 https://www.encodeproject.org/files/ENCFF379OHH/@@download/ENCFF379OHH.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF811MVO bed narrowPeak peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF068TCP, ENCFF379OHH 478468 Michael Snyder, Stanford 86913028a40f9e6895153070b30e9c5d https://www.encodeproject.org/files/ENCFF811MVO/@@download/ENCFF811MVO.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF068TCP bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF302OTZ 739519850 Michael Snyder, Stanford 9b710de391dc44dae61c29b3c423e5f0 https://www.encodeproject.org/files/ENCFF068TCP/@@download/ENCFF068TCP.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF815EXJ bigBed narrowPeak peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF811MVO 1076835 ENCODE Consortium 15743756e63515a3816fa2b7b79b1b06 https://www.encodeproject.org/files/ENCFF815EXJ/@@download/ENCFF815EXJ.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF066YTZ bam unfiltered alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF825QPA 828598909 ENCODE Processing Pipeline 8e18dd77b1ef4d120d7a14fd5b2e9c74 https://www.encodeproject.org/files/ENCFF066YTZ/@@download/ENCFF066YTZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF274UYC bam unfiltered alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF302OTZ 960890429 ENCODE Processing Pipeline 35ce4715cf40317fc292629e8ae5f2af https://www.encodeproject.org/files/ENCFF274UYC/@@download/ENCFF274UYC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF211JZH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF825QPA 539425575 ENCODE Processing Pipeline e7731ad8e4d741483cfd649c4fa3639b https://www.encodeproject.org/files/ENCFF211JZH/@@download/ENCFF211JZH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF123LVH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF302OTZ 606561663 ENCODE Processing Pipeline b2cda9b4cd579c9f9ba06048d21af92d https://www.encodeproject.org/files/ENCFF123LVH/@@download/ENCFF123LVH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF135ZME bigWig signal p-value ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF211JZH, ENCFF339ZWC 237997199 ENCODE Processing Pipeline d8a0d59463c916667aaf070c28fe56a0 https://www.encodeproject.org/files/ENCFF135ZME/@@download/ENCFF135ZME.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF091IDJ bigWig signal p-value ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF123LVH, ENCFF339ZWC 242796218 ENCODE Processing Pipeline a34f688eeeac38b6bc3a0848023d645e https://www.encodeproject.org/files/ENCFF091IDJ/@@download/ENCFF091IDJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF067CSE bigWig fold change over control ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF211JZH, ENCFF339ZWC 228958421 ENCODE Processing Pipeline 854a1893bb30a4cfd7007210e22e815f https://www.encodeproject.org/files/ENCFF067CSE/@@download/ENCFF067CSE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF873ENM bigWig signal p-value ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF123LVH, ENCFF211JZH, ENCFF339ZWC 235227857 ENCODE Processing Pipeline de4670e03258d88489de188a76b64579 https://www.encodeproject.org/files/ENCFF873ENM/@@download/ENCFF873ENM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF718ZJW bigWig fold change over control ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF123LVH, ENCFF339ZWC 254878433 ENCODE Processing Pipeline 8f03f72f5f9883c5f56ca95f7084ba92 https://www.encodeproject.org/files/ENCFF718ZJW/@@download/ENCFF718ZJW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF890ZJF bed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF123LVH, ENCFF211JZH, ENCFF339ZWC 5629718 ENCODE Processing Pipeline 60ffd7e9233be7823a70febcbd5efd81 https://www.encodeproject.org/files/ENCFF890ZJF/@@download/ENCFF890ZJF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF610OEV bed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF123LVH, ENCFF339ZWC 5086052 ENCODE Processing Pipeline 4f90d77e7022e3b531f321421c1cc294 https://www.encodeproject.org/files/ENCFF610OEV/@@download/ENCFF610OEV.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF393SFN bed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF211JZH, ENCFF339ZWC 4780787 ENCODE Processing Pipeline 51b7c498307e1a54c067fe751ac9da1d https://www.encodeproject.org/files/ENCFF393SFN/@@download/ENCFF393SFN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF600CWP bigWig fold change over control ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF123LVH, ENCFF211JZH, ENCFF339ZWC 419830492 ENCODE Processing Pipeline 566c4fe920e0d67063600ee39f426a8d https://www.encodeproject.org/files/ENCFF600CWP/@@download/ENCFF600CWP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF765ZTD bigBed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF393SFN 10259128 ENCODE Processing Pipeline cf5dab2c728ccc6793cb57a9435a6f6b https://www.encodeproject.org/files/ENCFF765ZTD/@@download/ENCFF765ZTD.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF146HTY bigBed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF610OEV 12647227 ENCODE Processing Pipeline 848c9fec684c4093a1b68b57d007ab1e https://www.encodeproject.org/files/ENCFF146HTY/@@download/ENCFF146HTY.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF945FJO bigBed narrowPeak peaks and background as input for IDR ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF890ZJF 12911856 ENCODE Processing Pipeline 927ea82c2b5246fb36be47e2592117a3 https://www.encodeproject.org/files/ENCFF945FJO/@@download/ENCFF945FJO.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF893ZYP bed narrowPeak conservative idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF393SFN, ENCFF547MET, ENCFF610OEV, ENCFF890ZJF 495732 ENCODE Processing Pipeline 0dee5019c8ace902bb28123e190385c2 https://www.encodeproject.org/files/ENCFF893ZYP/@@download/ENCFF893ZYP.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF382XAS bigBed narrowPeak conservative idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF893ZYP 976459 ENCODE Processing Pipeline 65a3a9a6df72c9f144e24a2ab9c2106b https://www.encodeproject.org/files/ENCFF382XAS/@@download/ENCFF382XAS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF606SGT bigBed narrowPeak optimal idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF683MGY 1019669 ENCODE Processing Pipeline c23c790e21e2fad5e0dda301c7acf320 https://www.encodeproject.org/files/ENCFF606SGT/@@download/ENCFF606SGT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF683MGY bed narrowPeak optimal idr thresholded peaks ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF393SFN, ENCFF547MET, ENCFF610OEV, ENCFF890ZJF 524918 ENCODE Processing Pipeline afd5e5b8f706016c408592beba12e6ab https://www.encodeproject.org/files/ENCFF683MGY/@@download/ENCFF683MGY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF002AOF fastq reads ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1395777274 Bing Ren, UCSD 5a7646444b1e89ed5d82cead7c731f39 SRA:SRR3651284 https://www.encodeproject.org/files/ENCFF002AOF/@@download/ENCFF002AOF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQM/ released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF002AOM fastq reads ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1329169132 Bing Ren, UCSD bed9425c27b2f6ee725dddda3d1dc429 SRA:SRR3651283 https://www.encodeproject.org/files/ENCFF002AOM/@@download/ENCFF002AOM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF816ROX bam alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOF, ENCFF806TVZ 864185368 ENCODE Processing Pipeline 815aff53dfc1225d48ca7ed06fd79523 https://www.encodeproject.org/files/ENCFF816ROX/@@download/ENCFF816ROX.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF417AAR bam alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOM, ENCFF806TVZ 1060014572 ENCODE Processing Pipeline 931943e38f5dc54905359cacf6aa141d https://www.encodeproject.org/files/ENCFF417AAR/@@download/ENCFF417AAR.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF849DUF bed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF417AAR, ENCFF790TLG, ENCFF988JQL 763715 ENCODE Processing Pipeline c5519b7091c8b114c561a72b2e1fd940 https://www.encodeproject.org/files/ENCFF849DUF/@@download/ENCFF849DUF.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF737BOX bed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF790TLG, ENCFF816ROX 1166570 ENCODE Processing Pipeline 1bd7d30f40b176ccae9bc67606b5ec9a https://www.encodeproject.org/files/ENCFF737BOX/@@download/ENCFF737BOX.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF100PUD bed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417AAR, ENCFF790TLG, ENCFF816ROX, ENCFF988JQL 935126 ENCODE Processing Pipeline a54c44c83b858126c2ea82d91152d377 https://www.encodeproject.org/files/ENCFF100PUD/@@download/ENCFF100PUD.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF358DDW bigBed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100PUD 2886209 ENCODE Processing Pipeline 5c6b379500058826cd1907367316bdcd https://www.encodeproject.org/files/ENCFF358DDW/@@download/ENCFF358DDW.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF896UMD bigBed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF849DUF 1977109 ENCODE Processing Pipeline c7d049ac4fe0c453aa9e4d09e9e12402 https://www.encodeproject.org/files/ENCFF896UMD/@@download/ENCFF896UMD.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF863YMZ bigBed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF737BOX 2771310 ENCODE Processing Pipeline 2d089817ee00ba46ace3a775f9dac40c https://www.encodeproject.org/files/ENCFF863YMZ/@@download/ENCFF863YMZ.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF015MPG bigWig signal p-value ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF417AAR, ENCFF790TLG, ENCFF988JQL 451070488 ENCODE Processing Pipeline ba41680a468b79b0cf228881edeea3f4 https://www.encodeproject.org/files/ENCFF015MPG/@@download/ENCFF015MPG.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF578MPW bigWig signal p-value ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF790TLG, ENCFF816ROX 305792561 ENCODE Processing Pipeline 036e0b295361f511dc66e33276ee7dcd https://www.encodeproject.org/files/ENCFF578MPW/@@download/ENCFF578MPW.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF389FGM bigWig signal p-value ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417AAR, ENCFF790TLG, ENCFF816ROX, ENCFF988JQL 772666493 ENCODE Processing Pipeline 0f474c29580f71d23a5b113cb54de8f1 https://www.encodeproject.org/files/ENCFF389FGM/@@download/ENCFF389FGM.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF636PQQ bigWig fold change over control ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF417AAR, ENCFF790TLG, ENCFF988JQL 556008130 ENCODE Processing Pipeline ae4bfc18406c6aad0c2b4c27c04b76d0 https://www.encodeproject.org/files/ENCFF636PQQ/@@download/ENCFF636PQQ.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF880KUA bigWig fold change over control ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF790TLG, ENCFF816ROX 350383923 ENCODE Processing Pipeline 75fa2b2ca39dba9b6aff0cb735d0377b https://www.encodeproject.org/files/ENCFF880KUA/@@download/ENCFF880KUA.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF445UPR bigWig fold change over control ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF417AAR, ENCFF790TLG, ENCFF816ROX, ENCFF988JQL 790662446 ENCODE Processing Pipeline 9eb38635c9bc937e64daa6942f774e55 https://www.encodeproject.org/files/ENCFF445UPR/@@download/ENCFF445UPR.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF782FXC bed narrowPeak replicated peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100PUD, ENCFF737BOX, ENCFF849DUF 767265 ENCODE Processing Pipeline b0c051b034db7955fac0fa9782e2bfc0 https://www.encodeproject.org/files/ENCFF782FXC/@@download/ENCFF782FXC.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF545MEH bigBed narrowPeak replicated peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF782FXC 1959427 ENCODE Processing Pipeline 32fa3964f308c465aef271228d5756ef https://www.encodeproject.org/files/ENCFF545MEH/@@download/ENCFF545MEH.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking ENCFF143WNX bam unfiltered alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOF, ENCFF018NEO 1496688804 ENCODE Processing Pipeline 714a13b461fa5b81c3b586dfb49ac78f https://www.encodeproject.org/files/ENCFF143WNX/@@download/ENCFF143WNX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF793DHP bam unfiltered alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOM, ENCFF018NEO 1534526321 ENCODE Processing Pipeline 24c40fcd9ed95ed7a2812c1892635b6e https://www.encodeproject.org/files/ENCFF793DHP/@@download/ENCFF793DHP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF087FBF bam alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOF, ENCFF018NEO 864022880 ENCODE Processing Pipeline c0ccd4516838a6896cc0cb8e569baa3f https://www.encodeproject.org/files/ENCFF087FBF/@@download/ENCFF087FBF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF487UBO bam alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOM, ENCFF018NEO 1059747362 ENCODE Processing Pipeline 8905356d4f09c6e6949e60832560bb57 https://www.encodeproject.org/files/ENCFF487UBO/@@download/ENCFF487UBO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF994SVG bed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF487UBO, ENCFF568CQH, ENCFF621MOH 763823 ENCODE Processing Pipeline 80f9ed0121de3b3991ff614223ef09e8 https://www.encodeproject.org/files/ENCFF994SVG/@@download/ENCFF994SVG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF385KAP bed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF087FBF, ENCFF621MOH 1167012 ENCODE Processing Pipeline ebf4d5a782b500e39cf9f129b478b268 https://www.encodeproject.org/files/ENCFF385KAP/@@download/ENCFF385KAP.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF347PCY bigBed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF994SVG 1978589 ENCODE Processing Pipeline 3886bfdff2b65fef25723499b39a25b7 https://www.encodeproject.org/files/ENCFF347PCY/@@download/ENCFF347PCY.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF571LUN bed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087FBF, ENCFF487UBO, ENCFF568CQH, ENCFF621MOH 956388 ENCODE Processing Pipeline 5fa98204ec1e732e78ccc755be926d0a https://www.encodeproject.org/files/ENCFF571LUN/@@download/ENCFF571LUN.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF774JME bigBed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF385KAP 2772450 ENCODE Processing Pipeline 925e483ec8fdc6e94fefdfc421892a90 https://www.encodeproject.org/files/ENCFF774JME/@@download/ENCFF774JME.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF490SKQ bigBed narrowPeak peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF571LUN 2949115 ENCODE Processing Pipeline 2a2b1a0aee2bad8f4b93fb9a7ad57ea4 https://www.encodeproject.org/files/ENCFF490SKQ/@@download/ENCFF490SKQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF180BOA bigWig signal p-value ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF487UBO, ENCFF568CQH, ENCFF621MOH 501736915 ENCODE Processing Pipeline 484e7531a20e8c60cf439b23b98a8381 https://www.encodeproject.org/files/ENCFF180BOA/@@download/ENCFF180BOA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF267KGN bigWig signal p-value ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF087FBF, ENCFF621MOH 307303031 ENCODE Processing Pipeline 254e8cca8846963bd03f5b15dc69f61f https://www.encodeproject.org/files/ENCFF267KGN/@@download/ENCFF267KGN.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF835RIX bigWig signal p-value ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087FBF, ENCFF487UBO, ENCFF568CQH, ENCFF621MOH 778909018 ENCODE Processing Pipeline ecbefd01c2936b399ed9dbac559d9a7a https://www.encodeproject.org/files/ENCFF835RIX/@@download/ENCFF835RIX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF543TXE bigWig fold change over control ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF487UBO, ENCFF568CQH, ENCFF621MOH 556060728 ENCODE Processing Pipeline 879df02ea9cb7a100d13a626a94825e9 https://www.encodeproject.org/files/ENCFF543TXE/@@download/ENCFF543TXE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF642CNC bigWig fold change over control ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF087FBF, ENCFF621MOH 350527823 ENCODE Processing Pipeline ff3bf75c8ec778c86e83503970525fbd https://www.encodeproject.org/files/ENCFF642CNC/@@download/ENCFF642CNC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF288VBM bed narrowPeak replicated peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF385KAP, ENCFF571LUN, ENCFF994SVG 767675 ENCODE Processing Pipeline 96f794e154a300a7aae75df77093fc2a https://www.encodeproject.org/files/ENCFF288VBM/@@download/ENCFF288VBM.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF537ZRP bigWig fold change over control ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087FBF, ENCFF487UBO, ENCFF568CQH, ENCFF621MOH 795601069 ENCODE Processing Pipeline 2b14bf600c2cc3e0243a5414322e1789 https://www.encodeproject.org/files/ENCFF537ZRP/@@download/ENCFF537ZRP.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF984UDQ bigBed narrowPeak replicated peaks ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF288VBM 1958916 ENCODE Processing Pipeline c471f319c24c34b7bc4ba897481f0106 https://www.encodeproject.org/files/ENCFF984UDQ/@@download/ENCFF984UDQ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF001NSH bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NTN 320001397 Michael Snyder, Stanford 7f25f6a76d0829d139b6199df0c68488 https://www.encodeproject.org/files/ENCFF001NSH/@@download/ENCFF001NSH.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSI bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NTK 335030677 Michael Snyder, Stanford 441690b75d7bd006c655d013f6848426 https://www.encodeproject.org/files/ENCFF001NSI/@@download/ENCFF001NSI.bam mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSJ bigBed narrowPeak peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJM 2734821 Michael Snyder, Stanford d01a4084adfc3d61431e17a74e4bb3cf https://www.encodeproject.org/files/ENCFF001NSJ/@@download/ENCFF001NSJ.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NSM bigWig signal ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NSH, ENCFF001NSI 273148851 Michael Snyder, Stanford aa55fd09bf8173e796bdc75a0454ef7f https://www.encodeproject.org/files/ENCFF001NSM/@@download/ENCFF001NSM.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NTK fastq reads ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 921190802 Michael Snyder, Stanford fa46374a09c29e7e95dd44f828e6682c https://www.encodeproject.org/files/ENCFF001NTK/@@download/ENCFF001NTK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NVE/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001NTN fastq reads ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 954638773 Michael Snyder, Stanford e62eccf5d396daf6a3d3cbbec8e55432 https://www.encodeproject.org/files/ENCFF001NTN/@@download/ENCFF001NTN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NVE/ released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF001YJM bed narrowPeak peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NSH, ENCFF001NSI 1145119 Michael Snyder, Stanford c3722ca6e7ccb27c9be9f5d44ac2d966 https://www.encodeproject.org/files/ENCFF001YJM/@@download/ENCFF001YJM.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF550NDX bam unfiltered alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NTK, ENCFF018NEO 1058455513 ENCODE Processing Pipeline d9e6344f2d2d095cc988745cf24a2c58 https://www.encodeproject.org/files/ENCFF550NDX/@@download/ENCFF550NDX.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF772WES bam unfiltered alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTN, ENCFF018NEO 1095750752 ENCODE Processing Pipeline ec7808d2fd9124f4b4bf61b1f24a7d09 https://www.encodeproject.org/files/ENCFF772WES/@@download/ENCFF772WES.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF170BUL bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NTK, ENCFF018NEO 642545742 ENCODE Processing Pipeline 278cbc99e956a2505fa2efc2d4acfaf3 https://www.encodeproject.org/files/ENCFF170BUL/@@download/ENCFF170BUL.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF886LQZ bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTN, ENCFF018NEO 652949954 ENCODE Processing Pipeline e29629fe5481fb35ab1b361902a23380 https://www.encodeproject.org/files/ENCFF886LQZ/@@download/ENCFF886LQZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF267NJV bigWig signal p-value ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF170BUL, ENCFF757ZBC 338525740 ENCODE Processing Pipeline 4bd42a6748013d5db6344e30b3140615 https://www.encodeproject.org/files/ENCFF267NJV/@@download/ENCFF267NJV.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF571JJC bigWig signal p-value ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF757ZBC, ENCFF886LQZ 360361704 ENCODE Processing Pipeline ec1f060fea299731a8f4d6af16b88d6c https://www.encodeproject.org/files/ENCFF571JJC/@@download/ENCFF571JJC.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF322BGU bigWig signal p-value ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF170BUL, ENCFF757ZBC, ENCFF886LQZ 541340551 ENCODE Processing Pipeline d68c4f2d7e565b6397120001efe962f4 https://www.encodeproject.org/files/ENCFF322BGU/@@download/ENCFF322BGU.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF085MXT bigWig fold change over control ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF757ZBC, ENCFF886LQZ 317958788 ENCODE Processing Pipeline 66e68c682489f6a86e456698ccd27ba7 https://www.encodeproject.org/files/ENCFF085MXT/@@download/ENCFF085MXT.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF993SJL bigWig fold change over control ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF170BUL, ENCFF757ZBC 298856081 ENCODE Processing Pipeline 883d7d6822e70f2728b9bfb96d406a23 https://www.encodeproject.org/files/ENCFF993SJL/@@download/ENCFF993SJL.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF160HQN bigWig fold change over control ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF170BUL, ENCFF757ZBC, ENCFF886LQZ 523313787 ENCODE Processing Pipeline 88e9b2376d6566a7baeef8783ba3c47b https://www.encodeproject.org/files/ENCFF160HQN/@@download/ENCFF160HQN.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF041ZRE bed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF757ZBC, ENCFF886LQZ 5690043 ENCODE Processing Pipeline 7542be9291520b69dd63830974dd0a14 https://www.encodeproject.org/files/ENCFF041ZRE/@@download/ENCFF041ZRE.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF153NNX bed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF170BUL, ENCFF757ZBC 5351067 ENCODE Processing Pipeline 5cdf08c60316901d4a664a8e74e17252 https://www.encodeproject.org/files/ENCFF153NNX/@@download/ENCFF153NNX.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF282VZU bed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF170BUL, ENCFF757ZBC, ENCFF886LQZ 6248359 ENCODE Processing Pipeline 266c16d4fccbff79ba7c42abf6701af4 https://www.encodeproject.org/files/ENCFF282VZU/@@download/ENCFF282VZU.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF937WPN bigBed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF041ZRE 13210300 ENCODE Processing Pipeline c55cbb828d9cbc53f9e287713275be6b https://www.encodeproject.org/files/ENCFF937WPN/@@download/ENCFF937WPN.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF568RBL bigBed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF153NNX 10814565 ENCODE Processing Pipeline bee15cb2236ce3752d8b92767e338ec8 https://www.encodeproject.org/files/ENCFF568RBL/@@download/ENCFF568RBL.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF419KAN bigBed narrowPeak peaks and background as input for IDR ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF282VZU 13392281 ENCODE Processing Pipeline ecb360cbc6ff47e6420d9fdf348d2d9a https://www.encodeproject.org/files/ENCFF419KAN/@@download/ENCFF419KAN.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF302QVP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF546TPQ 1364564 ENCODE Processing Pipeline 8d844acd83561c75d336a5ed0034b1eb https://www.encodeproject.org/files/ENCFF302QVP/@@download/ENCFF302QVP.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF546TPQ bed narrowPeak conservative idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF041ZRE, ENCFF153NNX, ENCFF282VZU, ENCFF547MET 705146 ENCODE Processing Pipeline 58d30ce20139dcf5434cee9eb58ffc86 https://www.encodeproject.org/files/ENCFF546TPQ/@@download/ENCFF546TPQ.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF219OVU bed narrowPeak optimal idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF041ZRE, ENCFF153NNX, ENCFF282VZU, ENCFF547MET 792922 ENCODE Processing Pipeline 6c2a10fa95692479bbb15cd0d0736a96 https://www.encodeproject.org/files/ENCFF219OVU/@@download/ENCFF219OVU.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF515FLJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF219OVU 1493648 ENCODE Processing Pipeline 8bbb1c44765224335e8ed100a8b88212 https://www.encodeproject.org/files/ENCFF515FLJ/@@download/ENCFF515FLJ.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF325FAW fastq reads ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 1 50 single-ended 1579160575 Bing Ren, UCSD 46b7a77f671dd888501f6ddd558f6484 SRA:SRR4235584 https://www.encodeproject.org/files/ENCFF325FAW/@@download/ENCFF325FAW.fastq.gz Illumina HiSeq 4000 /files/ENCFF982BEQ/ released mild to moderate bottlenecking ENCFF504ZKY fastq reads ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 1 50 single-ended 2855620478 Bing Ren, UCSD 779f4050d1ae50cec611d6c6a427bb02 SRA:SRR4235585 https://www.encodeproject.org/files/ENCFF504ZKY/@@download/ENCFF504ZKY.fastq.gz Illumina HiSeq 4000 /files/ENCFF024PVD/ released mild to moderate bottlenecking ENCFF213EBC bam unfiltered alignments ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF504ZKY 3637733940 ENCODE Processing Pipeline 8176b6d86ceffad603c3eda82aa84e67 https://www.encodeproject.org/files/ENCFF213EBC/@@download/ENCFF213EBC.bam mm10 released mild to moderate bottlenecking ENCFF548BRR bam unfiltered alignments ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF325FAW 2152285533 ENCODE Processing Pipeline 65f874bca1d87a2f6f062b00569b7b2a https://www.encodeproject.org/files/ENCFF548BRR/@@download/ENCFF548BRR.bam mm10 released mild to moderate bottlenecking ENCFF140IYZ bam alignments ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF325FAW 1660399844 ENCODE Processing Pipeline e4867863e94de476d7cc10db4fc3550e https://www.encodeproject.org/files/ENCFF140IYZ/@@download/ENCFF140IYZ.bam mm10 released mild to moderate bottlenecking ENCFF112HWN bam alignments ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF504ZKY 2608115611 ENCODE Processing Pipeline 02f5774a2a65882a973ad47070369b36 https://www.encodeproject.org/files/ENCFF112HWN/@@download/ENCFF112HWN.bam mm10 released mild to moderate bottlenecking ENCFF420CUW bed narrowPeak peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF140IYZ, ENCFF869IME 2277441 ENCODE Processing Pipeline 3f5bc187df42897ed9a2cd9236de89da https://www.encodeproject.org/files/ENCFF420CUW/@@download/ENCFF420CUW.bed.gz mm10 released mild to moderate bottlenecking ENCFF422BOL bigBed narrowPeak peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF283XJQ 4434937 ENCODE Processing Pipeline e8e7b493b7bd723a761ab9c22a3b46b2 https://www.encodeproject.org/files/ENCFF422BOL/@@download/ENCFF422BOL.bigBed mm10 released mild to moderate bottlenecking ENCFF106XKF bigBed narrowPeak peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF060HPW 7338845 ENCODE Processing Pipeline 4e460b63afde6231e20b63f1de6f3794 https://www.encodeproject.org/files/ENCFF106XKF/@@download/ENCFF106XKF.bigBed mm10 released mild to moderate bottlenecking ENCFF060HPW bed narrowPeak peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF112HWN, ENCFF140IYZ, ENCFF869IME, ENCFF940GMW 2770719 ENCODE Processing Pipeline e033f6ac83480d069dfb5c6d6b9d4d9b https://www.encodeproject.org/files/ENCFF060HPW/@@download/ENCFF060HPW.bed.gz mm10 released mild to moderate bottlenecking ENCFF283XJQ bed narrowPeak peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF112HWN, ENCFF869IME, ENCFF940GMW 2039508 ENCODE Processing Pipeline 2535d69b54024645e4ccacc650cfc056 https://www.encodeproject.org/files/ENCFF283XJQ/@@download/ENCFF283XJQ.bed.gz mm10 released mild to moderate bottlenecking ENCFF325AFZ bigBed narrowPeak peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF420CUW 4951331 ENCODE Processing Pipeline c93ac9ced1af97d9ad011060e0371e20 https://www.encodeproject.org/files/ENCFF325AFZ/@@download/ENCFF325AFZ.bigBed mm10 released mild to moderate bottlenecking ENCFF093SSZ bigWig signal p-value ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF112HWN, ENCFF869IME, ENCFF940GMW 963339812 ENCODE Processing Pipeline f9e21c50bfc4dcc292f20350e30bbb07 https://www.encodeproject.org/files/ENCFF093SSZ/@@download/ENCFF093SSZ.bigWig mm10 released mild to moderate bottlenecking ENCFF511XET bigWig signal p-value ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF140IYZ, ENCFF869IME 676273961 ENCODE Processing Pipeline 34ef914a494e11a1c6ccd0b581e49aae https://www.encodeproject.org/files/ENCFF511XET/@@download/ENCFF511XET.bigWig mm10 released mild to moderate bottlenecking ENCFF530YMK bigWig signal p-value ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF112HWN, ENCFF140IYZ, ENCFF869IME, ENCFF940GMW 1249691478 ENCODE Processing Pipeline 69fc182e32e4f0e5a9caedbce9764824 https://www.encodeproject.org/files/ENCFF530YMK/@@download/ENCFF530YMK.bigWig mm10 released mild to moderate bottlenecking ENCFF493BHF bigWig fold change over control ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF112HWN, ENCFF869IME, ENCFF940GMW 1140473526 ENCODE Processing Pipeline 9fdedbd263293ccf37bb89286ae83cb8 https://www.encodeproject.org/files/ENCFF493BHF/@@download/ENCFF493BHF.bigWig mm10 released mild to moderate bottlenecking ENCFF323PQS bigWig fold change over control ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF140IYZ, ENCFF869IME 732648743 ENCODE Processing Pipeline 5084e528816794a9bbfd5bc6b359fcef https://www.encodeproject.org/files/ENCFF323PQS/@@download/ENCFF323PQS.bigWig mm10 released mild to moderate bottlenecking ENCFF440LYR bigWig fold change over control ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF112HWN, ENCFF140IYZ, ENCFF869IME, ENCFF940GMW 1499362740 ENCODE Processing Pipeline 507071713c3582f3c69f161208bdb27d https://www.encodeproject.org/files/ENCFF440LYR/@@download/ENCFF440LYR.bigWig mm10 released mild to moderate bottlenecking ENCFF003VMR bed narrowPeak replicated peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF060HPW, ENCFF283XJQ, ENCFF420CUW 1793331 ENCODE Processing Pipeline fb3eab160c4e15eb36a31b2b62c294aa https://www.encodeproject.org/files/ENCFF003VMR/@@download/ENCFF003VMR.bed.gz mm10 released mild to moderate bottlenecking ENCFF461DLI bigBed narrowPeak replicated peaks ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1, 2 ENCFF003VMR 3838775 ENCODE Processing Pipeline db77635016b403a61301eaf64b813d94 https://www.encodeproject.org/files/ENCFF461DLI/@@download/ENCFF461DLI.bigBed mm10 released mild to moderate bottlenecking ENCFF001NKO bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NKQ 605853076 Michael Snyder, Stanford 79f5314e39afc0cd7c23e7a644b36def https://www.encodeproject.org/files/ENCFF001NKO/@@download/ENCFF001NKO.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF001NKP bigBed narrowPeak peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YIM 1089806 Michael Snyder, Stanford 8e85513b6ce0d05a880c25e79f7e32f3 https://www.encodeproject.org/files/ENCFF001NKP/@@download/ENCFF001NKP.bigBed mm9 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF001NKQ fastq reads ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1280247499 Michael Snyder, Stanford b9e36b7ff3b896c553c37856a679242b https://www.encodeproject.org/files/ENCFF001NKQ/@@download/ENCFF001NKQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF001NKS fastq reads ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1245250757 Michael Snyder, Stanford ddca465e7c9f6e1fb66420b07454df18 https://www.encodeproject.org/files/ENCFF001NKS/@@download/ENCFF001NKS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF001NKU bigWig signal ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NKO, ENCFF001NKW 403870554 Michael Snyder, Stanford 4d9b06e3e863a6aedc30c655b729a098 https://www.encodeproject.org/files/ENCFF001NKU/@@download/ENCFF001NKU.bigWig mm9 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF001NKW bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NKS 611321000 Michael Snyder, Stanford fd7e3877b15456746bd310f5aa19cba6 https://www.encodeproject.org/files/ENCFF001NKW/@@download/ENCFF001NKW.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF001YIM bed narrowPeak peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NKO, ENCFF001NKW 497016 Michael Snyder, Stanford dcd95e0d63fa0a5677ef0f85f53ff257 https://www.encodeproject.org/files/ENCFF001YIM/@@download/ENCFF001YIM.bed.gz mm9 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF236BQA bam unfiltered alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NKQ, ENCFF018NEO 1388456762 ENCODE Processing Pipeline 9b8a9078c8d017b37d0e45448b7bb2ee https://www.encodeproject.org/files/ENCFF236BQA/@@download/ENCFF236BQA.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF226KVK bam unfiltered alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NKS, ENCFF018NEO 1353940726 ENCODE Processing Pipeline ccec2f91108c3a13d24ab75277457d47 https://www.encodeproject.org/files/ENCFF226KVK/@@download/ENCFF226KVK.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF351KUA bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NKS, ENCFF018NEO 927196561 ENCODE Processing Pipeline 86b03e93762d2afa6271865b28ebf94c https://www.encodeproject.org/files/ENCFF351KUA/@@download/ENCFF351KUA.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF848TVS bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NKQ, ENCFF018NEO 968236432 ENCODE Processing Pipeline 1c24d67a530793d47394bbc07a529b7f https://www.encodeproject.org/files/ENCFF848TVS/@@download/ENCFF848TVS.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF638JIL bigWig signal p-value ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF848TVS 225095003 ENCODE Processing Pipeline 9cfea3c64fb50b14455fafd5c2e85333 https://www.encodeproject.org/files/ENCFF638JIL/@@download/ENCFF638JIL.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF926COJ bigWig signal p-value ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF351KUA 218469938 ENCODE Processing Pipeline 0e4b2961beb4b2f4051cbeadc777ce93 https://www.encodeproject.org/files/ENCFF926COJ/@@download/ENCFF926COJ.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF592MUJ bigWig signal p-value ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF351KUA, ENCFF848TVS 210985020 ENCODE Processing Pipeline 386229c54abac40cb61597c3410f6033 https://www.encodeproject.org/files/ENCFF592MUJ/@@download/ENCFF592MUJ.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF428DGW bigWig fold change over control ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF848TVS 369391271 ENCODE Processing Pipeline 85c188389ef9e3d3eaff3f31ad30ec04 https://www.encodeproject.org/files/ENCFF428DGW/@@download/ENCFF428DGW.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF659WQU bigWig fold change over control ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF351KUA, ENCFF848TVS 602600120 ENCODE Processing Pipeline 12f901046c404ea25cfd0d8e5018cea0 https://www.encodeproject.org/files/ENCFF659WQU/@@download/ENCFF659WQU.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF821USP bigWig fold change over control ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF351KUA 344161110 ENCODE Processing Pipeline 41750f7c442f2c0e4b61f50c89861492 https://www.encodeproject.org/files/ENCFF821USP/@@download/ENCFF821USP.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF221YDR bed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF848TVS 5763355 ENCODE Processing Pipeline 80b341f1137a761e125cb469fcdb1e13 https://www.encodeproject.org/files/ENCFF221YDR/@@download/ENCFF221YDR.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF943ETE bed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF351KUA, ENCFF848TVS 6443809 ENCODE Processing Pipeline 7df255e7d2ff9a7c810accb597141571 https://www.encodeproject.org/files/ENCFF943ETE/@@download/ENCFF943ETE.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF488GVO bed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF351KUA 6078959 ENCODE Processing Pipeline 1cf1736830889f5ecca50d717feb157e https://www.encodeproject.org/files/ENCFF488GVO/@@download/ENCFF488GVO.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF776VNT bigBed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF221YDR 12949389 ENCODE Processing Pipeline 356d08b3572b000ce4796c988af0204f https://www.encodeproject.org/files/ENCFF776VNT/@@download/ENCFF776VNT.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF128TGM bed narrowPeak optimal idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF221YDR, ENCFF488GVO, ENCFF547MET, ENCFF943ETE 701782 ENCODE Processing Pipeline 72d81a98572e04580758a41d0bc06113 https://www.encodeproject.org/files/ENCFF128TGM/@@download/ENCFF128TGM.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF416GDW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF639TIV 1518950 ENCODE Processing Pipeline 1201c5496530257a9c7ee2c31684af06 https://www.encodeproject.org/files/ENCFF416GDW/@@download/ENCFF416GDW.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF115WDT bigBed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF488GVO 12810642 ENCODE Processing Pipeline 33b1c97c0f554961254052bad6479d7d https://www.encodeproject.org/files/ENCFF115WDT/@@download/ENCFF115WDT.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF814BIS bigBed narrowPeak peaks and background as input for IDR ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF943ETE 12702950 ENCODE Processing Pipeline 76ac4819304994e2ebc686fa09dfd7b7 https://www.encodeproject.org/files/ENCFF814BIS/@@download/ENCFF814BIS.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF639TIV bed narrowPeak conservative idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF221YDR, ENCFF488GVO, ENCFF547MET, ENCFF943ETE 661828 ENCODE Processing Pipeline 6ef10011d83f6ac5e73217d5b55c8d2d https://www.encodeproject.org/files/ENCFF639TIV/@@download/ENCFF639TIV.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF882IFI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF128TGM 1597386 ENCODE Processing Pipeline f9aa81374ef47be354d9b2d917c74487 https://www.encodeproject.org/files/ENCFF882IFI/@@download/ENCFF882IFI.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF001JYP bam alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001JZF 550120373 Bing Ren, UCSD 1225eaf7bdb6bafdccfeac957e392e4c https://www.encodeproject.org/files/ENCFF001JYP/@@download/ENCFF001JYP.bam mm9 archived low read length, low read depth insufficient read depth ENCFF001JYQ bam alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001JZD 450627599 Bing Ren, UCSD c8645204b9ca141b1decd44fad134b09 https://www.encodeproject.org/files/ENCFF001JYQ/@@download/ENCFF001JYQ.bam mm9 archived low read length, low read depth insufficient read depth ENCFF001JYR bigBed broadPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE ENCFF001XVZ 648726 Bing Ren, UCSD 526e65f5236a70fd10959ca60c4ec5c2 https://www.encodeproject.org/files/ENCFF001JYR/@@download/ENCFF001JYR.bigBed mm9 archived low read length, low read depth insufficient read depth ENCFF001JYV bigWig signal ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 42878018 Bing Ren, UCSD d72d9ceb520ac080ef0bda47094cb900 https://www.encodeproject.org/files/ENCFF001JYV/@@download/ENCFF001JYV.bigWig mm9 archived low read length, low read depth missing derived_from insufficient read depth ENCFF001JZD fastq reads ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 453667470 Bing Ren, UCSD 40e99b0841901797af9ecaf790b8233a https://www.encodeproject.org/files/ENCFF001JZD/@@download/ENCFF001JZD.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZE/ released low read length, low read depth insufficient read depth ENCFF001JZF fastq reads ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 555923042 Bing Ren, UCSD a56f583a730aefd8312400fd9404559b https://www.encodeproject.org/files/ENCFF001JZF/@@download/ENCFF001JZF.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZL/ released low read length, inconsistent control read length, low read depth insufficient read depth ENCFF001XVZ bed broadPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 404478 Bing Ren, UCSD a2fb1b8cf4fe2ff389e2d57f944018f1 https://www.encodeproject.org/files/ENCFF001XVZ/@@download/ENCFF001XVZ.bed.gz mm9 archived low read length, low read depth missing derived_from insufficient read depth ENCFF949SRZ bam alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JZD, ENCFF018NEO 345255395 ENCODE Processing Pipeline 5d8be817b6cb4a925e3b9c671f585be8 https://www.encodeproject.org/files/ENCFF949SRZ/@@download/ENCFF949SRZ.bam mm10 released low read length, low read depth insufficient read depth ENCFF715DTN bam alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JZF, ENCFF018NEO 412374812 ENCODE Processing Pipeline 4c22828100e63fef26e5561f07373d86 https://www.encodeproject.org/files/ENCFF715DTN/@@download/ENCFF715DTN.bam mm10 released low read length, low read depth insufficient read depth ENCFF750WWK bed narrowPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380RIM, ENCFF436OKP, ENCFF715DTN 1293568 ENCODE Processing Pipeline 37bdf38c8592abc17a8afee2f8b78db1 https://www.encodeproject.org/files/ENCFF750WWK/@@download/ENCFF750WWK.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF886DJV bigBed narrowPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF114EDM 3791391 ENCODE Processing Pipeline 90af57e285764da7dce3bdffc5e93244 https://www.encodeproject.org/files/ENCFF886DJV/@@download/ENCFF886DJV.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF877MNY bigWig fold change over control ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380RIM, ENCFF436OKP, ENCFF715DTN 200755845 ENCODE Processing Pipeline 929d8f3388114e43dbf374a3a1c27cec https://www.encodeproject.org/files/ENCFF877MNY/@@download/ENCFF877MNY.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF515VAA bigBed narrowPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF288QEA 3566594 ENCODE Processing Pipeline 03d4350deb5b16284c5aed75cd3897e4 https://www.encodeproject.org/files/ENCFF515VAA/@@download/ENCFF515VAA.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF998AKU bigWig signal p-value ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF380RIM, ENCFF436OKP, ENCFF949SRZ 347029982 ENCODE Processing Pipeline c0148ae2c4dc8bc02817ba5652ee44a0 https://www.encodeproject.org/files/ENCFF998AKU/@@download/ENCFF998AKU.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF174AVC bed narrowPeak replicated peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF114EDM, ENCFF288QEA, ENCFF750WWK 1603644 ENCODE Processing Pipeline 15b530f2cbc5176d0be55d78c04318dc https://www.encodeproject.org/files/ENCFF174AVC/@@download/ENCFF174AVC.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF114EDM bed narrowPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF380RIM, ENCFF436OKP, ENCFF715DTN, ENCFF949SRZ 1421301 ENCODE Processing Pipeline 25d98c89bc947738fc94d0d26333aba5 https://www.encodeproject.org/files/ENCFF114EDM/@@download/ENCFF114EDM.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF540JYL bigBed narrowPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF750WWK 3531101 ENCODE Processing Pipeline 25fa4cfda7be433812737f5a8043b15b https://www.encodeproject.org/files/ENCFF540JYL/@@download/ENCFF540JYL.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF456XIG bigWig signal p-value ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF380RIM, ENCFF436OKP, ENCFF715DTN, ENCFF949SRZ 410607763 ENCODE Processing Pipeline ad29913152b6b7ec9a636f36b10e28d9 https://www.encodeproject.org/files/ENCFF456XIG/@@download/ENCFF456XIG.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF668SMR bigWig fold change over control ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF380RIM, ENCFF436OKP, ENCFF715DTN, ENCFF949SRZ 304569718 ENCODE Processing Pipeline f281062dd340c23cddb0bfd73faa9161 https://www.encodeproject.org/files/ENCFF668SMR/@@download/ENCFF668SMR.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF288QEA bed narrowPeak peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF380RIM, ENCFF436OKP, ENCFF949SRZ 1303429 ENCODE Processing Pipeline 4bec1aae10a6a0922f00e177f8fb5900 https://www.encodeproject.org/files/ENCFF288QEA/@@download/ENCFF288QEA.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF585QNT bigWig fold change over control ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF380RIM, ENCFF436OKP, ENCFF949SRZ 172265118 ENCODE Processing Pipeline 778ced68f1436c3ae1870b4c79f01f59 https://www.encodeproject.org/files/ENCFF585QNT/@@download/ENCFF585QNT.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF166YJN bigWig signal p-value ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380RIM, ENCFF436OKP, ENCFF715DTN 340432994 ENCODE Processing Pipeline 20fa40997d7bee0a754447cbed8d4527 https://www.encodeproject.org/files/ENCFF166YJN/@@download/ENCFF166YJN.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF145HGE bigBed narrowPeak replicated peaks ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF174AVC 3084671 ENCODE Processing Pipeline ca0aaa634f083ed493e25007ce255ae5 https://www.encodeproject.org/files/ENCFF145HGE/@@download/ENCFF145HGE.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF351XNG bam unfiltered alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JZD, ENCFF018NEO 476947669 ENCODE Processing Pipeline 2392c3d444cf03c4f62477d2454f6219 https://www.encodeproject.org/files/ENCFF351XNG/@@download/ENCFF351XNG.bam mm10 released low read length, low read depth insufficient read depth ENCFF149TAF bam unfiltered alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JZF, ENCFF018NEO 582074212 ENCODE Processing Pipeline 8fea8386fa43d2287a46710be62f46f7 https://www.encodeproject.org/files/ENCFF149TAF/@@download/ENCFF149TAF.bam mm10 released low read length, low read depth insufficient read depth ENCFF654AKM fastq reads ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 666784504 Michael Snyder, Stanford 071078533b597fe19dde57d894eefe5d https://www.encodeproject.org/files/ENCFF654AKM/@@download/ENCFF654AKM.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF982TNR bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF125CLY 663735865 Michael Snyder, Stanford 125c75e7753062e3c0b9d0d4414f6fc1 https://www.encodeproject.org/files/ENCFF982TNR/@@download/ENCFF982TNR.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF996YQZ bed narrowPeak peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF251NRS, ENCFF982TNR 275556 Michael Snyder, Stanford db911ded34d545de34bc48d4b3351d2e https://www.encodeproject.org/files/ENCFF996YQZ/@@download/ENCFF996YQZ.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF125CLY fastq reads ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 625024634 Michael Snyder, Stanford 4196967234d2ae7911797d9ca50fcd08 https://www.encodeproject.org/files/ENCFF125CLY/@@download/ENCFF125CLY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF251NRS bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF654AKM 665994673 Michael Snyder, Stanford 05852df717b63ad0a79627a4b70a3521 https://www.encodeproject.org/files/ENCFF251NRS/@@download/ENCFF251NRS.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF138CKI bigBed narrowPeak peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF996YQZ 601962 ENCODE Consortium b737c9b5922b7af8a156978329b5e553 https://www.encodeproject.org/files/ENCFF138CKI/@@download/ENCFF138CKI.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF481LSJ bam unfiltered alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF125CLY 872468446 ENCODE Processing Pipeline 758cb5f5e011640359ba4cc4966a3a56 https://www.encodeproject.org/files/ENCFF481LSJ/@@download/ENCFF481LSJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF204JXN bam unfiltered alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF654AKM 891547128 ENCODE Processing Pipeline a29f873f5ab3b4ad9de83162c0805000 https://www.encodeproject.org/files/ENCFF204JXN/@@download/ENCFF204JXN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF484OES bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF125CLY 580227677 ENCODE Processing Pipeline 70e35cd4eaa9e8b1a2f424d2f9f7759e https://www.encodeproject.org/files/ENCFF484OES/@@download/ENCFF484OES.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF316WLC bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF654AKM 564131551 ENCODE Processing Pipeline 0d5d6c081424c2ee5be2cf41cb19ce5f https://www.encodeproject.org/files/ENCFF316WLC/@@download/ENCFF316WLC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF791SCN bigWig signal p-value ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF484OES 238802280 ENCODE Processing Pipeline 5a8370b27109d56da5153e5aee1bce2f https://www.encodeproject.org/files/ENCFF791SCN/@@download/ENCFF791SCN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF220KUW bigWig signal p-value ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF316WLC, ENCFF339ZWC 237532165 ENCODE Processing Pipeline 446f332aad3c529984e4db4bc2ddc37e https://www.encodeproject.org/files/ENCFF220KUW/@@download/ENCFF220KUW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF847ESC bigWig signal p-value ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316WLC, ENCFF339ZWC, ENCFF484OES 235197853 ENCODE Processing Pipeline ffa2251f63fa89b5688dac9e707c97fb https://www.encodeproject.org/files/ENCFF847ESC/@@download/ENCFF847ESC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF379PYM bigWig fold change over control ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF484OES 256262195 ENCODE Processing Pipeline 90a2c351abdd995f05e0a7f152047737 https://www.encodeproject.org/files/ENCFF379PYM/@@download/ENCFF379PYM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF784SHD bigWig fold change over control ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF316WLC, ENCFF339ZWC 246084702 ENCODE Processing Pipeline bcadb3270d33e2c5ca4b6e10cd0ca91e https://www.encodeproject.org/files/ENCFF784SHD/@@download/ENCFF784SHD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF285ZBQ bed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF316WLC, ENCFF339ZWC 962184 ENCODE Processing Pipeline 0181078431f81c7cab56e991b583e14b https://www.encodeproject.org/files/ENCFF285ZBQ/@@download/ENCFF285ZBQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF994TGI bed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316WLC, ENCFF339ZWC, ENCFF484OES 4901275 ENCODE Processing Pipeline 9efc7e206eebb8608fc952e96689f4ac https://www.encodeproject.org/files/ENCFF994TGI/@@download/ENCFF994TGI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF904GMZ bigBed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF301YAS 1345951 ENCODE Processing Pipeline 5ce895f659333f9402299b4186f63857 https://www.encodeproject.org/files/ENCFF904GMZ/@@download/ENCFF904GMZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF022MWL bigBed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF285ZBQ 2084368 ENCODE Processing Pipeline 1f50f0dc830597d6eafaf667d8900993 https://www.encodeproject.org/files/ENCFF022MWL/@@download/ENCFF022MWL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF193AYX bigWig fold change over control ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF316WLC, ENCFF339ZWC, ENCFF484OES 431781946 ENCODE Processing Pipeline 8c996ecfc57261e237d6c8c114f4e8e6 https://www.encodeproject.org/files/ENCFF193AYX/@@download/ENCFF193AYX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF301YAS bed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF484OES 588331 ENCODE Processing Pipeline 4019844e54ecf4b2a81d0bbc2b511ea0 https://www.encodeproject.org/files/ENCFF301YAS/@@download/ENCFF301YAS.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF196BKU bigBed narrowPeak peaks and background as input for IDR ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF994TGI 10625070 ENCODE Processing Pipeline 8ef6fbf076b8a7f1780658b55af6f248 https://www.encodeproject.org/files/ENCFF196BKU/@@download/ENCFF196BKU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF529JOF bigBed narrowPeak conservative idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF758VCU 261656 ENCODE Processing Pipeline 5b0426fd5493210e534dd7c37207106f https://www.encodeproject.org/files/ENCFF529JOF/@@download/ENCFF529JOF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF758VCU bed narrowPeak conservative idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF285ZBQ, ENCFF301YAS, ENCFF547MET, ENCFF994TGI 133894 ENCODE Processing Pipeline 7faa68957af7a16c0e91665b3a5d38a4 https://www.encodeproject.org/files/ENCFF758VCU/@@download/ENCFF758VCU.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF976EGR bigBed narrowPeak optimal idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF353DJA 343654 ENCODE Processing Pipeline e930efe4a389f3ca5c097c6bfbdd663b https://www.encodeproject.org/files/ENCFF976EGR/@@download/ENCFF976EGR.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF353DJA bed narrowPeak optimal idr thresholded peaks ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF285ZBQ, ENCFF301YAS, ENCFF547MET, ENCFF994TGI 146661 ENCODE Processing Pipeline a6e07c6f4faf7b8e3a9d8c28972946c7 https://www.encodeproject.org/files/ENCFF353DJA/@@download/ENCFF353DJA.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF880XUQ fastq reads ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 775223496 Michael Snyder, Stanford 8bd913addcb569e114dfeff805d5e49f https://www.encodeproject.org/files/ENCFF880XUQ/@@download/ENCFF880XUQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF432YTR fastq reads ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 802732122 Michael Snyder, Stanford c2ea64b7a23d2d25fab9e701764853ba https://www.encodeproject.org/files/ENCFF432YTR/@@download/ENCFF432YTR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF230ACF bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF880XUQ 715120655 Michael Snyder, Stanford 21b1af58bc30e0586c9b25700725e311 https://www.encodeproject.org/files/ENCFF230ACF/@@download/ENCFF230ACF.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF042EWQ bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF432YTR 771746957 Michael Snyder, Stanford 66062b7fb25a7f58dee82d823678080e https://www.encodeproject.org/files/ENCFF042EWQ/@@download/ENCFF042EWQ.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF739EJW bed narrowPeak peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF042EWQ, ENCFF230ACF 657259 Michael Snyder, Stanford df8eeb90d4aa2f3c816e28627c31d790 https://www.encodeproject.org/files/ENCFF739EJW/@@download/ENCFF739EJW.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF931NAC bigBed narrowPeak peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF739EJW 1422446 ENCODE Consortium 4dae1255b28aab81e4d09bf023864a95 https://www.encodeproject.org/files/ENCFF931NAC/@@download/ENCFF931NAC.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF357XKZ bam unfiltered alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF880XUQ 997649986 ENCODE Processing Pipeline a8240389ddee9921de4c2f7e51b83ad0 https://www.encodeproject.org/files/ENCFF357XKZ/@@download/ENCFF357XKZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF840KKY bam unfiltered alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF432YTR 1061964191 ENCODE Processing Pipeline e84131ef5c126d66cd9d4fca45ca322c https://www.encodeproject.org/files/ENCFF840KKY/@@download/ENCFF840KKY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF881FSZ bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF432YTR 661282685 ENCODE Processing Pipeline 1269770bf0dc7c37d89fdfc73e2b7116 https://www.encodeproject.org/files/ENCFF881FSZ/@@download/ENCFF881FSZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF352KWE bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF880XUQ 496561585 ENCODE Processing Pipeline c759df7ff642b0907834e58a76474926 https://www.encodeproject.org/files/ENCFF352KWE/@@download/ENCFF352KWE.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF232FKR bigWig fold change over control ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF352KWE 233240676 ENCODE Processing Pipeline 5dece6c98b3eb1a95d8e72a958bcbdaa https://www.encodeproject.org/files/ENCFF232FKR/@@download/ENCFF232FKR.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF267GRE bigWig signal p-value ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF352KWE 255837762 ENCODE Processing Pipeline 926a63cf3d2181454b80fd5fc4c819c1 https://www.encodeproject.org/files/ENCFF267GRE/@@download/ENCFF267GRE.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF474MDF bigWig signal p-value ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF352KWE, ENCFF881FSZ 309835357 ENCODE Processing Pipeline 05dea9c6d6784051fb8f7192ea9e7b82 https://www.encodeproject.org/files/ENCFF474MDF/@@download/ENCFF474MDF.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF110YJQ bigWig fold change over control ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF881FSZ 297875008 ENCODE Processing Pipeline 629d13bce7834d684ee381de29071f70 https://www.encodeproject.org/files/ENCFF110YJQ/@@download/ENCFF110YJQ.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF770ZYG bigBed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF705OQG 10450113 ENCODE Processing Pipeline 5ed39e847e0c43d52fbde65ec1436100 https://www.encodeproject.org/files/ENCFF770ZYG/@@download/ENCFF770ZYG.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF285UPG bigWig signal p-value ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF881FSZ 323255137 ENCODE Processing Pipeline 82ba7f744222aa1042252a0919a3644e https://www.encodeproject.org/files/ENCFF285UPG/@@download/ENCFF285UPG.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF061ZVH bigBed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF881QFU 10444544 ENCODE Processing Pipeline 385fd2b45531ab4b20721d7a6c269c54 https://www.encodeproject.org/files/ENCFF061ZVH/@@download/ENCFF061ZVH.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF703UMY bigBed narrowPeak conservative idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF444MFD 1178202 ENCODE Processing Pipeline b9861be19c793190575d26c9d7c30572 https://www.encodeproject.org/files/ENCFF703UMY/@@download/ENCFF703UMY.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF894YTN bigWig fold change over control ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF352KWE, ENCFF881FSZ 428222762 ENCODE Processing Pipeline c610114bb3126828f7084f76046f2fbf https://www.encodeproject.org/files/ENCFF894YTN/@@download/ENCFF894YTN.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF551TDS bed narrowPeak optimal idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF547MET, ENCFF619BMP, ENCFF705OQG, ENCFF881QFU 684063 ENCODE Processing Pipeline 2ab1c017e0ed3cf2f7be3af7f0515869 https://www.encodeproject.org/files/ENCFF551TDS/@@download/ENCFF551TDS.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF705OQG bed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF881FSZ 4943242 ENCODE Processing Pipeline fe3327d04929b1d2d5f3cc3c77042182 https://www.encodeproject.org/files/ENCFF705OQG/@@download/ENCFF705OQG.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF444MFD bed narrowPeak conservative idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF547MET, ENCFF619BMP, ENCFF705OQG, ENCFF881QFU 622866 ENCODE Processing Pipeline 4c365d99cf84c2d44f4c72875d8da603 https://www.encodeproject.org/files/ENCFF444MFD/@@download/ENCFF444MFD.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF619BMP bed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF352KWE, ENCFF881FSZ 5668888 ENCODE Processing Pipeline 74d0527c3ed36ed0b51a94106af5232d https://www.encodeproject.org/files/ENCFF619BMP/@@download/ENCFF619BMP.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF901QFM bigBed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF619BMP 13125735 ENCODE Processing Pipeline 762e6d21111a70a5deedd4d842c30ee1 https://www.encodeproject.org/files/ENCFF901QFM/@@download/ENCFF901QFM.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF881QFU bed narrowPeak peaks and background as input for IDR ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF352KWE 4953688 ENCODE Processing Pipeline df1d3222bcef013be580716b074e20e1 https://www.encodeproject.org/files/ENCFF881QFU/@@download/ENCFF881QFU.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF259KAA bigBed narrowPeak optimal idr thresholded peaks ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF551TDS 1273668 ENCODE Processing Pipeline b675be225fa7ad41594a91afa52ef269 https://www.encodeproject.org/files/ENCFF259KAA/@@download/ENCFF259KAA.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF001KYJ bam alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KYT 327865806 Bing Ren, UCSD adfc065417cdfe77060d3b5fdf998447 https://www.encodeproject.org/files/ENCFF001KYJ/@@download/ENCFF001KYJ.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KYK bam alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KYS 354968801 Bing Ren, UCSD 93efe344eca305f97c17ca168bb5a289 https://www.encodeproject.org/files/ENCFF001KYK/@@download/ENCFF001KYK.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KYM bigWig signal ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KYJ, ENCFF001KYK 82139044 Bing Ren, UCSD d16681619ea91c90637331460fbc480d https://www.encodeproject.org/files/ENCFF001KYM/@@download/ENCFF001KYM.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KYS fastq reads ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 522973467 Bing Ren, UCSD bb69ba39ce57627e6a13d2ccec1e6a80 https://www.encodeproject.org/files/ENCFF001KYS/@@download/ENCFF001KYS.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth ENCFF001KYT fastq reads ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 496674729 Bing Ren, UCSD d9c3637931b15a52607dd86a2aa722d2 https://www.encodeproject.org/files/ENCFF001KYT/@@download/ENCFF001KYT.fastq.gz Illumina HiSeq 2000 released low read length, low read depth insufficient read depth ENCFF446JCN bam unfiltered alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KYS, ENCFF806TVZ 617025162 J. Michael Cherry, Stanford b6e153aaa83c6426ca3c0f37ed96dad8 https://www.encodeproject.org/files/ENCFF446JCN/@@download/ENCFF446JCN.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF133ALJ bam unfiltered alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KYT, ENCFF806TVZ 581295626 J. Michael Cherry, Stanford c26cbd2ac805a191c68ac1ddd10b3032 https://www.encodeproject.org/files/ENCFF133ALJ/@@download/ENCFF133ALJ.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF283CTW bam alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KYT, ENCFF018NEO 382485508 ENCODE Processing Pipeline 6ae1d3a985e825e9d71eb6b282440d1d https://www.encodeproject.org/files/ENCFF283CTW/@@download/ENCFF283CTW.bam mm10 released low read length, low read depth insufficient read depth ENCFF347BCY bam alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KYS, ENCFF018NEO 418937812 ENCODE Processing Pipeline 2b560cfb03c89ad0a1e7d9be0de1fb38 https://www.encodeproject.org/files/ENCFF347BCY/@@download/ENCFF347BCY.bam mm10 released low read length, low read depth insufficient read depth ENCFF590YTJ bam unfiltered alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KYT, ENCFF018NEO 582192233 ENCODE Processing Pipeline c39d68c1c7b84569f35ef55d75b60742 https://www.encodeproject.org/files/ENCFF590YTJ/@@download/ENCFF590YTJ.bam mm10 released low read length, low read depth insufficient read depth ENCFF974HYX bam unfiltered alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KYS, ENCFF018NEO 617963667 ENCODE Processing Pipeline 231b69b3463d3fd7cb6e5e544307944f https://www.encodeproject.org/files/ENCFF974HYX/@@download/ENCFF974HYX.bam mm10 released low read length, low read depth insufficient read depth ENCFF287QGR bed narrowPeak peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF737GDS, ENCFF836OSL 731883 Michael Snyder, Stanford bcc69cf1c54e5ee0f38eb823f4fb86ed https://www.encodeproject.org/files/ENCFF287QGR/@@download/ENCFF287QGR.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF929ZQW fastq reads ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 796430566 Michael Snyder, Stanford 677ef1046fabe4bef30235ce73d8c480 https://www.encodeproject.org/files/ENCFF929ZQW/@@download/ENCFF929ZQW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF190NEX fastq reads ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 777982600 Michael Snyder, Stanford 6ad306f5a7e001cd287712bdf6290d2e https://www.encodeproject.org/files/ENCFF190NEX/@@download/ENCFF190NEX.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF836OSL bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF929ZQW 821391521 Michael Snyder, Stanford 8aa32fdc1d53af34e0099ebe182095c1 https://www.encodeproject.org/files/ENCFF836OSL/@@download/ENCFF836OSL.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF737GDS bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF190NEX 815942780 Michael Snyder, Stanford d7c0a1454fa02495d7f66ca7ba9bd244 https://www.encodeproject.org/files/ENCFF737GDS/@@download/ENCFF737GDS.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF148ECK bigBed narrowPeak peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF287QGR 1489047 ENCODE Consortium 5ec43953e3d321be5d238394d5562a72 https://www.encodeproject.org/files/ENCFF148ECK/@@download/ENCFF148ECK.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF363AEZ bam unfiltered alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF929ZQW 1065576922 ENCODE Processing Pipeline 9964e4cfbb448bb77f9a18e8d3f7a960 https://www.encodeproject.org/files/ENCFF363AEZ/@@download/ENCFF363AEZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF517ZZX bam unfiltered alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF190NEX 1032491677 ENCODE Processing Pipeline 89928e49f439276b949851af752599a1 https://www.encodeproject.org/files/ENCFF517ZZX/@@download/ENCFF517ZZX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF695ZHK bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF190NEX 699176703 ENCODE Processing Pipeline 42fea946b293c9f6bca976352a6e186e https://www.encodeproject.org/files/ENCFF695ZHK/@@download/ENCFF695ZHK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF195QUA bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF929ZQW 701248210 ENCODE Processing Pipeline e061e491fdbd1b822db7816d0992a937 https://www.encodeproject.org/files/ENCFF195QUA/@@download/ENCFF195QUA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF904QII bigWig signal p-value ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF195QUA, ENCFF339ZWC 239402999 ENCODE Processing Pipeline 796ec56cbdb6f1e2df52a635d3994a00 https://www.encodeproject.org/files/ENCFF904QII/@@download/ENCFF904QII.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF290EBM bigWig signal p-value ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF695ZHK 237917758 ENCODE Processing Pipeline 4dce75f326bd8c0f1b5b1904a2c38174 https://www.encodeproject.org/files/ENCFF290EBM/@@download/ENCFF290EBM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF395UQO bigWig signal p-value ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF195QUA, ENCFF339ZWC, ENCFF695ZHK 221032985 ENCODE Processing Pipeline 78c52d696158aec86705a0b7b07cc6df https://www.encodeproject.org/files/ENCFF395UQO/@@download/ENCFF395UQO.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF305ZMC bigWig fold change over control ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF195QUA, ENCFF339ZWC 286878602 ENCODE Processing Pipeline 6dd4d0c64c0e73cbf39b4655dc4185bf https://www.encodeproject.org/files/ENCFF305ZMC/@@download/ENCFF305ZMC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF113RHY bigWig fold change over control ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF195QUA, ENCFF339ZWC, ENCFF695ZHK 479908868 ENCODE Processing Pipeline 27da7cc29c300f110d13a6a0c0a75674 https://www.encodeproject.org/files/ENCFF113RHY/@@download/ENCFF113RHY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF698XTO bigWig fold change over control ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF695ZHK 278147675 ENCODE Processing Pipeline fcad732bae0e60020392708ec39ab314 https://www.encodeproject.org/files/ENCFF698XTO/@@download/ENCFF698XTO.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF291UJL bed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF195QUA, ENCFF339ZWC 4062221 ENCODE Processing Pipeline 8f77bfc3088005266284a7028c5a605e https://www.encodeproject.org/files/ENCFF291UJL/@@download/ENCFF291UJL.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF841NPW bigBed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 ENCFF291UJL 9441384 ENCODE Processing Pipeline 02b8bd743515c65128c45d149e86250c https://www.encodeproject.org/files/ENCFF841NPW/@@download/ENCFF841NPW.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF856YRM bed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF195QUA, ENCFF339ZWC, ENCFF695ZHK 6120857 ENCODE Processing Pipeline 5b971644f1825b7c49f52c7a65a7ff71 https://www.encodeproject.org/files/ENCFF856YRM/@@download/ENCFF856YRM.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF946OOG bed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF695ZHK 5456791 ENCODE Processing Pipeline e328c6ee77fb5dc4607c62a546760427 https://www.encodeproject.org/files/ENCFF946OOG/@@download/ENCFF946OOG.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF469JYB bigBed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 ENCFF946OOG 12614908 ENCODE Processing Pipeline 6a337767854b2bacd5cb641e3a5aff12 https://www.encodeproject.org/files/ENCFF469JYB/@@download/ENCFF469JYB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF756IPH bed narrowPeak conservative idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF291UJL, ENCFF547MET, ENCFF856YRM, ENCFF946OOG 648289 ENCODE Processing Pipeline 4c0690c307da97b82ace4829d6f4240c https://www.encodeproject.org/files/ENCFF756IPH/@@download/ENCFF756IPH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF067HTB bigBed narrowPeak peaks and background as input for IDR ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF856YRM 13004600 ENCODE Processing Pipeline 295621903a89935915a4e30698bd049a https://www.encodeproject.org/files/ENCFF067HTB/@@download/ENCFF067HTB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF610VQZ bigBed narrowPeak conservative idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF756IPH 1192130 ENCODE Processing Pipeline 86792ba6a96f4f31f196f06926681da5 https://www.encodeproject.org/files/ENCFF610VQZ/@@download/ENCFF610VQZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF554BKP bed narrowPeak optimal idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF291UJL, ENCFF547MET, ENCFF856YRM, ENCFF946OOG 791132 ENCODE Processing Pipeline 895d8851b97a3a9fe6b8eb4cdf45e543 https://www.encodeproject.org/files/ENCFF554BKP/@@download/ENCFF554BKP.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF824UBX bigBed narrowPeak optimal idr thresholded peaks ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF554BKP 1397533 ENCODE Processing Pipeline 899099bf2a133ed77ce663530865db08 https://www.encodeproject.org/files/ENCFF824UBX/@@download/ENCFF824UBX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF001MLW bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MMD 1818337911 Ross Hardison, PennState de5d4629c0ec07d258c596f8da39ddb2 https://www.encodeproject.org/files/ENCFF001MLW/@@download/ENCFF001MLW.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MLX bigBed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YEK 68476 Ross Hardison, PennState 65ead4248bc442678504f89cc9342a3d https://www.encodeproject.org/files/ENCFF001MLX/@@download/ENCFF001MLX.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MLZ bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MMH 3513802317 Ross Hardison, PennState 798e9c9341b47f11414c669e194c786e https://www.encodeproject.org/files/ENCFF001MLZ/@@download/ENCFF001MLZ.bam mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMA bigBed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEL 106950 Ross Hardison, PennState 43854c2551216018b349f3b4cd9477db https://www.encodeproject.org/files/ENCFF001MMA/@@download/ENCFF001MMA.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMB bigBed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEM 64045 Ross Hardison, PennState 83c9de53074d29211764fba838c30c85 https://www.encodeproject.org/files/ENCFF001MMB/@@download/ENCFF001MMB.bigBed mm9 archived low read length, inconsistent platforms, mixed read lengths ENCFF001MMC bigWig signal ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 2262411649 Ross Hardison, PennState 410fcae895710fa0e6ebe1e2912fa499 https://www.encodeproject.org/files/ENCFF001MMC/@@download/ENCFF001MMC.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MMD fastq reads ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 41 single-ended 1447608138 Ross Hardison, PennState 9a16d0d5e4cfc78189f04a81e48afcd0 https://www.encodeproject.org/files/ENCFF001MMD/@@download/ENCFF001MMD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLS/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths ENCFF001MME bigWig signal ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 4458300767 Ross Hardison, PennState 11392f02acf54b2c08db65b3336a78c4 https://www.encodeproject.org/files/ENCFF001MME/@@download/ENCFF001MME.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MMF bigWig signal ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 4861822761 Ross Hardison, PennState 845899d7cc22449de83b77a9b53b2d50 https://www.encodeproject.org/files/ENCFF001MMF/@@download/ENCFF001MMF.bigWig mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001MMH fastq reads ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 55 single-ended 3056317484 Ross Hardison, PennState 5c858d8a6d5ea1e35d4ad3872a435e8a https://www.encodeproject.org/files/ENCFF001MMH/@@download/ENCFF001MMH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MLY/ released low read length, inconsistent platforms, mixed read lengths ENCFF001YEK bed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 15696 Ross Hardison, PennState 44344e161b113ad887f55677da75a14c https://www.encodeproject.org/files/ENCFF001YEK/@@download/ENCFF001YEK.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YEL bed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 22792 Ross Hardison, PennState ebcce043ffef64122950292d9fd64ff3 https://www.encodeproject.org/files/ENCFF001YEL/@@download/ENCFF001YEL.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001YEM bed broadPeak peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 13226 Ross Hardison, PennState 650c8c2e98de8efa474db29726ce1593 https://www.encodeproject.org/files/ENCFF001YEM/@@download/ENCFF001YEM.bed.gz mm9 archived low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF804CVY bam unfiltered alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MMH, ENCFF018NEO 2816608215 ENCODE Processing Pipeline 9541418a37c0dbdfe8279e6ff6dcbff4 https://www.encodeproject.org/files/ENCFF804CVY/@@download/ENCFF804CVY.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF532DSC bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MMD, ENCFF018NEO 1136376170 ENCODE Processing Pipeline d64fd74e5f02c0f445de727bc906e970 https://www.encodeproject.org/files/ENCFF532DSC/@@download/ENCFF532DSC.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF334HQQ bam unfiltered alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MMD, ENCFF018NEO 1730786421 ENCODE Processing Pipeline 4122afc8afc66ad4c824b25325886e49 https://www.encodeproject.org/files/ENCFF334HQQ/@@download/ENCFF334HQQ.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF294OQM bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MMH, ENCFF018NEO 1881495435 ENCODE Processing Pipeline 2fc388d04d25b482ad11a1b44eff8744 https://www.encodeproject.org/files/ENCFF294OQM/@@download/ENCFF294OQM.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF289RKB bigWig signal p-value ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 883328409 ENCODE Processing Pipeline 3ac6f2fb846ba2623c2aae7d348751d7 https://www.encodeproject.org/files/ENCFF289RKB/@@download/ENCFF289RKB.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF982TPY bigWig signal p-value ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF294OQM, ENCFF318FKF, ENCFF867VYO 1132920189 ENCODE Processing Pipeline 521a8dcfd691ca1cccc6a8d71fbe3e2c https://www.encodeproject.org/files/ENCFF982TPY/@@download/ENCFF982TPY.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF406NLD bigWig signal p-value ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF294OQM, ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 1162442491 ENCODE Processing Pipeline 59641e39e3f8df4fb1e33fb69ff46bd6 https://www.encodeproject.org/files/ENCFF406NLD/@@download/ENCFF406NLD.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF409BBM bigWig fold change over control ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 888123324 ENCODE Processing Pipeline ad32994082ce70162dd622630615c9b3 https://www.encodeproject.org/files/ENCFF409BBM/@@download/ENCFF409BBM.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF720OXO bigWig fold change over control ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF294OQM, ENCFF318FKF, ENCFF867VYO 1193312624 ENCODE Processing Pipeline e4e6b6f34b1363bc24268fcc6fbb9eb3 https://www.encodeproject.org/files/ENCFF720OXO/@@download/ENCFF720OXO.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF636WAD bigWig fold change over control ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF294OQM, ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 1509103026 ENCODE Processing Pipeline 9dead86bf9be1626f1d3b0b8282136f8 https://www.encodeproject.org/files/ENCFF636WAD/@@download/ENCFF636WAD.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF207KAT bigBed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF449JJN 11356201 ENCODE Processing Pipeline b48d7631c95214bc3897eff899f3a4d1 https://www.encodeproject.org/files/ENCFF207KAT/@@download/ENCFF207KAT.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF763OTD bigBed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF346ZZZ 11457438 ENCODE Processing Pipeline 2ef511c8d4723a14ca732a9ead6f1255 https://www.encodeproject.org/files/ENCFF763OTD/@@download/ENCFF763OTD.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF505PYY bigBed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF698CKE 11295983 ENCODE Processing Pipeline 05a42561fd34bd98234380fc3c76286e https://www.encodeproject.org/files/ENCFF505PYY/@@download/ENCFF505PYY.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF353FXM bed narrowPeak conservative idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF346ZZZ, ENCFF449JJN, ENCFF547MET, ENCFF698CKE 3174 ENCODE Processing Pipeline e4e6042473473e1c10f980ba5f24fca2 https://www.encodeproject.org/files/ENCFF353FXM/@@download/ENCFF353FXM.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF660BWP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF353FXM 79374 ENCODE Processing Pipeline 6be91f6b58b563fe6f2c85adfe417494 https://www.encodeproject.org/files/ENCFF660BWP/@@download/ENCFF660BWP.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF449JJN bed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 6114844 ENCODE Processing Pipeline f8f4d38cd336636dc4abd2c253bb48e7 https://www.encodeproject.org/files/ENCFF449JJN/@@download/ENCFF449JJN.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF346ZZZ bed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF294OQM, ENCFF318FKF, ENCFF867VYO 6243598 ENCODE Processing Pipeline bdf2d13812c130aba4b584c7cae64c5e https://www.encodeproject.org/files/ENCFF346ZZZ/@@download/ENCFF346ZZZ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF698CKE bed narrowPeak peaks and background as input for IDR ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF294OQM, ENCFF318FKF, ENCFF532DSC, ENCFF867VYO 6935435 ENCODE Processing Pipeline 5e9e1fb3d2c25ee12f2ac293d8ea4e82 https://www.encodeproject.org/files/ENCFF698CKE/@@download/ENCFF698CKE.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF692NRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF333ULW 49359 ENCODE Processing Pipeline e5f8e077c931c6ded93fb477b6a2db31 https://www.encodeproject.org/files/ENCFF692NRR/@@download/ENCFF692NRR.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF333ULW bed narrowPeak optimal idr thresholded peaks ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF346ZZZ, ENCFF449JJN, ENCFF547MET, ENCFF698CKE 3479 ENCODE Processing Pipeline 5ab0e8fea84a982a46894a0495783cc6 https://www.encodeproject.org/files/ENCFF333ULW/@@download/ENCFF333ULW.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF556KBV bam alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF826YGB, ENCFF829ICZ 2717557196 ENCODE Processing Pipeline f6cdf079876cd855d8c74c1d35bedf1a https://www.encodeproject.org/files/ENCFF556KBV/@@download/ENCFF556KBV.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF826YGB fastq reads ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 427636981 Bing Ren, UCSD 2703b7f29f2bf64e578a4c51d3dda390 SRA:SRR3651993 https://www.encodeproject.org/files/ENCFF826YGB/@@download/ENCFF826YGB.fastq.gz Illumina HiSeq 2500 /files/ENCFF393EAJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF829ICZ fastq reads ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2722463188 Bing Ren, UCSD fc9b216eb8861a553defcd1622d3872e SRA:SRR3651994 https://www.encodeproject.org/files/ENCFF829ICZ/@@download/ENCFF829ICZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF393EAJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF089OZC fastq reads ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3400139781 Bing Ren, UCSD fd15951031a3d930da4a193cb8a09d4b SRA:SRR3651995 https://www.encodeproject.org/files/ENCFF089OZC/@@download/ENCFF089OZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF545UQA/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF023TPO bam alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF089OZC, ENCFF806TVZ 2798070766 ENCODE Processing Pipeline 9d843b910fe50a1f1087b4b9745d5fc1 https://www.encodeproject.org/files/ENCFF023TPO/@@download/ENCFF023TPO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF173RLM bed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF023TPO, ENCFF371GCA, ENCFF627MYB 2275011 ENCODE Processing Pipeline a6c7463865610ab31eff9689a63c07ea https://www.encodeproject.org/files/ENCFF173RLM/@@download/ENCFF173RLM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF612JXI bigBed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF287OGA 5326205 ENCODE Processing Pipeline afa4e721946c0e59354ba1142cf32924 https://www.encodeproject.org/files/ENCFF612JXI/@@download/ENCFF612JXI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF874NVI bigBed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF173RLM 5528192 ENCODE Processing Pipeline 0429ad1c500276a5a57e006cc8ad47d2 https://www.encodeproject.org/files/ENCFF874NVI/@@download/ENCFF874NVI.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF947RTB bed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF371GCA, ENCFF556KBV, ENCFF627MYB 2154275 ENCODE Processing Pipeline 8de7195352b645f3e782cf4987a75cf4 https://www.encodeproject.org/files/ENCFF947RTB/@@download/ENCFF947RTB.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF287OGA bed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF023TPO, ENCFF371GCA, ENCFF556KBV, ENCFF627MYB 2274367 ENCODE Processing Pipeline e102d50c8d47826ab20e3c82fc6865be https://www.encodeproject.org/files/ENCFF287OGA/@@download/ENCFF287OGA.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF901TIN bigBed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF947RTB 4063557 ENCODE Processing Pipeline 6c318949d58bd968d126b96ae7843ffb https://www.encodeproject.org/files/ENCFF901TIN/@@download/ENCFF901TIN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF555KCD bigWig signal p-value ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF371GCA, ENCFF556KBV, ENCFF627MYB 738721614 ENCODE Processing Pipeline c898d20a141cff28433f6b93b9c3785e https://www.encodeproject.org/files/ENCFF555KCD/@@download/ENCFF555KCD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF111AYC bigWig signal p-value ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF023TPO, ENCFF371GCA, ENCFF627MYB 775660285 ENCODE Processing Pipeline 21dc2d92e078025cdd850baf6d0d8434 https://www.encodeproject.org/files/ENCFF111AYC/@@download/ENCFF111AYC.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF161FTL bigWig signal p-value ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF023TPO, ENCFF371GCA, ENCFF556KBV, ENCFF627MYB 1181763471 ENCODE Processing Pipeline 241c80168f79c715b11dbabc23787906 https://www.encodeproject.org/files/ENCFF161FTL/@@download/ENCFF161FTL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF689OUH bigWig fold change over control ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF023TPO, ENCFF371GCA, ENCFF627MYB 1018467070 ENCODE Processing Pipeline e1deec69afcf8e56cd274bdb9b1d24b3 https://www.encodeproject.org/files/ENCFF689OUH/@@download/ENCFF689OUH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF418AZI bed narrowPeak replicated peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF173RLM, ENCFF287OGA, ENCFF947RTB 1674445 ENCODE Processing Pipeline fc470c9e2c061e66e019a6aeeaed208e https://www.encodeproject.org/files/ENCFF418AZI/@@download/ENCFF418AZI.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF351MXY bigWig fold change over control ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF371GCA, ENCFF556KBV, ENCFF627MYB 984664350 ENCODE Processing Pipeline 20fb0f26dc6eb849b5b83df2b8181a1b https://www.encodeproject.org/files/ENCFF351MXY/@@download/ENCFF351MXY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF822BKF bigWig fold change over control ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF023TPO, ENCFF371GCA, ENCFF556KBV, ENCFF627MYB 1505189231 ENCODE Processing Pipeline 5922579c71267e86cc142a0edd35c548 https://www.encodeproject.org/files/ENCFF822BKF/@@download/ENCFF822BKF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF934AKU bigBed narrowPeak replicated peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF418AZI 3274051 ENCODE Processing Pipeline 901ad3bc2719275bc447561f52f9da55 https://www.encodeproject.org/files/ENCFF934AKU/@@download/ENCFF934AKU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF230TLT bam unfiltered alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF826YGB, ENCFF829ICZ 3757251744 ENCODE Processing Pipeline e98834f057216d094b832440c7750cac https://www.encodeproject.org/files/ENCFF230TLT/@@download/ENCFF230TLT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF177UZE bam unfiltered alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF089OZC 3981607244 ENCODE Processing Pipeline a3c609dfc839c39771ee3b35a5c43444 https://www.encodeproject.org/files/ENCFF177UZE/@@download/ENCFF177UZE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF691FJO bam alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF826YGB, ENCFF829ICZ 2717120271 ENCODE Processing Pipeline a31546a64d0caae79e02e13624e31f00 https://www.encodeproject.org/files/ENCFF691FJO/@@download/ENCFF691FJO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF408PUU bam alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF089OZC 2797646805 ENCODE Processing Pipeline 718450a20d2c99e3282cfb00de81b98b https://www.encodeproject.org/files/ENCFF408PUU/@@download/ENCFF408PUU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF498XNU bed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF408PUU, ENCFF884PDZ 2401888 ENCODE Processing Pipeline af609502dbda7c8d97570b37a78c32d9 https://www.encodeproject.org/files/ENCFF498XNU/@@download/ENCFF498XNU.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF637WIY bed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF691FJO 1614951 ENCODE Processing Pipeline 33cabdb4e4205c0e30fa81b158016a30 https://www.encodeproject.org/files/ENCFF637WIY/@@download/ENCFF637WIY.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF449CIU bed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF408PUU, ENCFF691FJO, ENCFF884PDZ 2626336 ENCODE Processing Pipeline 69a3c35a48afdefd1ed9d6a320baef27 https://www.encodeproject.org/files/ENCFF449CIU/@@download/ENCFF449CIU.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF082FEU bigBed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF498XNU 5800378 ENCODE Processing Pipeline d69454797824f33648d40f734fbf0bc1 https://www.encodeproject.org/files/ENCFF082FEU/@@download/ENCFF082FEU.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF521FUX bigBed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF637WIY 3070700 ENCODE Processing Pipeline 8e38efd00e94e665d09b3582e0c0e049 https://www.encodeproject.org/files/ENCFF521FUX/@@download/ENCFF521FUX.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF437ZFZ bigBed narrowPeak peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF449CIU 6156778 ENCODE Processing Pipeline 62f2b1ce42fdc87ba14918829c6777f7 https://www.encodeproject.org/files/ENCFF437ZFZ/@@download/ENCFF437ZFZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF536EKP bigWig signal p-value ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF408PUU, ENCFF884PDZ 925953946 ENCODE Processing Pipeline 71d46719ffd97ce625f6b3c7dd96deee https://www.encodeproject.org/files/ENCFF536EKP/@@download/ENCFF536EKP.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF674MUO bigWig signal p-value ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF691FJO 843451271 ENCODE Processing Pipeline 0765e1a263653eb80c0dc4ea344614a1 https://www.encodeproject.org/files/ENCFF674MUO/@@download/ENCFF674MUO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF278KHA bigWig signal p-value ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF408PUU, ENCFF691FJO, ENCFF884PDZ 1468952790 ENCODE Processing Pipeline c9ef8545261c537b891c4e8db1430b80 https://www.encodeproject.org/files/ENCFF278KHA/@@download/ENCFF278KHA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF286GUK bigWig fold change over control ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF408PUU, ENCFF884PDZ 1091749096 ENCODE Processing Pipeline cf16e644d85dd0d7e3f3648a3448ba31 https://www.encodeproject.org/files/ENCFF286GUK/@@download/ENCFF286GUK.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF954GIF bigWig fold change over control ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF691FJO 882429449 ENCODE Processing Pipeline c51cfea8509420cf311cc4efbaefa0f2 https://www.encodeproject.org/files/ENCFF954GIF/@@download/ENCFF954GIF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF972QDT bigWig fold change over control ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF408PUU, ENCFF691FJO, ENCFF884PDZ 1582678970 ENCODE Processing Pipeline da68c9e41486192505e6c818b6267098 https://www.encodeproject.org/files/ENCFF972QDT/@@download/ENCFF972QDT.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF311HQB bed narrowPeak replicated peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF449CIU, ENCFF498XNU, ENCFF637WIY 1453565 ENCODE Processing Pipeline 3afae03b65ce39daee1384210989c787 https://www.encodeproject.org/files/ENCFF311HQB/@@download/ENCFF311HQB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF491DGS bigBed narrowPeak replicated peaks ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF311HQB 2820248 ENCODE Processing Pipeline 1d018aff7f34bedee39f62b6625c740e https://www.encodeproject.org/files/ENCFF491DGS/@@download/ENCFF491DGS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF680BTD fastq reads ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 50 single-ended 1250806328 Bing Ren, UCSD fdac33d108a200bcf2ae57d2ba8d461d SRA:SRR3651197 https://www.encodeproject.org/files/ENCFF680BTD/@@download/ENCFF680BTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF515ALU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF861UVB fastq reads ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 50 single-ended 1291018869 Bing Ren, UCSD 48817a679310fdcb448f6dc688e9efd7 SRA:SRR3651199 https://www.encodeproject.org/files/ENCFF861UVB/@@download/ENCFF861UVB.fastq.gz Illumina HiSeq 2500 /files/ENCFF246LOG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF030PAP fastq reads ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 50 single-ended 1500467515 Bing Ren, UCSD df3ce10a98c2e52db4ee3d5943b4e45f SRA:SRR3651200 https://www.encodeproject.org/files/ENCFF030PAP/@@download/ENCFF030PAP.fastq.gz Illumina HiSeq 2000 /files/ENCFF246LOG/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF122VYX fastq reads ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 50 single-ended 1162657037 Bing Ren, UCSD 144811cac17831aa3323da8450fe2ed0 SRA:SRR3651198 https://www.encodeproject.org/files/ENCFF122VYX/@@download/ENCFF122VYX.fastq.gz Illumina HiSeq 2500 /files/ENCFF515ALU/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF163QXW bam alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF122VYX, ENCFF680BTD, ENCFF806TVZ 1333917764 ENCODE Processing Pipeline c8a08683a96acc8be9484c7afca81988 https://www.encodeproject.org/files/ENCFF163QXW/@@download/ENCFF163QXW.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF928BKW bam alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF030PAP, ENCFF806TVZ, ENCFF861UVB 1480287767 ENCODE Processing Pipeline 198d0d207b3e121e672f8736064916d2 https://www.encodeproject.org/files/ENCFF928BKW/@@download/ENCFF928BKW.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF813WRX bigBed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF761LVF 2114375 ENCODE Processing Pipeline 2e3162095e0035aa2fbcc01234c43f9b https://www.encodeproject.org/files/ENCFF813WRX/@@download/ENCFF813WRX.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF059SES bigBed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF097MUR 3055899 ENCODE Processing Pipeline 039b456fd811df822f75d36a2809a90d https://www.encodeproject.org/files/ENCFF059SES/@@download/ENCFF059SES.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF761LVF bed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF170XAR, ENCFF928BKW 990070 ENCODE Processing Pipeline 0a34d62afa9e777d2768e8bb935872cc https://www.encodeproject.org/files/ENCFF761LVF/@@download/ENCFF761LVF.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF097MUR bed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF163QXW, ENCFF170XAR, ENCFF269MZC, ENCFF928BKW 1554972 ENCODE Processing Pipeline 28df8a5ac16e2ed3aa186461aff13871 https://www.encodeproject.org/files/ENCFF097MUR/@@download/ENCFF097MUR.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF255NRL bigBed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF630VEK 2901994 ENCODE Processing Pipeline 45c0f1f5e1647251ba9145d8962a5d4a https://www.encodeproject.org/files/ENCFF255NRL/@@download/ENCFF255NRL.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF630VEK bed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF163QXW, ENCFF269MZC 1455167 ENCODE Processing Pipeline d165cb3451b20f907b6b5e2379de8953 https://www.encodeproject.org/files/ENCFF630VEK/@@download/ENCFF630VEK.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF269TKX bigWig signal p-value ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF170XAR, ENCFF928BKW 510833879 ENCODE Processing Pipeline 39b5ea03b424e4a0141a650bd45de1bd https://www.encodeproject.org/files/ENCFF269TKX/@@download/ENCFF269TKX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF700HMP bigWig signal p-value ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF163QXW, ENCFF269MZC 408435617 ENCODE Processing Pipeline 4ba119dcc5dca577dc1d821bfd93266a https://www.encodeproject.org/files/ENCFF700HMP/@@download/ENCFF700HMP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF203XEB bigWig signal p-value ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF163QXW, ENCFF170XAR, ENCFF269MZC, ENCFF928BKW 983580119 ENCODE Processing Pipeline 342056086119d59bbe9d50025d4ffbfb https://www.encodeproject.org/files/ENCFF203XEB/@@download/ENCFF203XEB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF335LDO bigWig fold change over control ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF170XAR, ENCFF928BKW 513910208 ENCODE Processing Pipeline 76c960fefcb6b598732c1f0a8f1939dc https://www.encodeproject.org/files/ENCFF335LDO/@@download/ENCFF335LDO.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF502OND bigWig fold change over control ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF163QXW, ENCFF269MZC 485271628 ENCODE Processing Pipeline a17b5d58755efb266b34d78174552776 https://www.encodeproject.org/files/ENCFF502OND/@@download/ENCFF502OND.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF495QKL bigBed narrowPeak replicated peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF034QTH 1217800 ENCODE Processing Pipeline 64c72659355c634802db4e2d679c5753 https://www.encodeproject.org/files/ENCFF495QKL/@@download/ENCFF495QKL.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF123MNY bigWig fold change over control ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF163QXW, ENCFF170XAR, ENCFF269MZC, ENCFF928BKW 985256313 ENCODE Processing Pipeline fc09e2b951b180458bcd637d3f890fe3 https://www.encodeproject.org/files/ENCFF123MNY/@@download/ENCFF123MNY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF034QTH bed narrowPeak replicated peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF097MUR, ENCFF630VEK, ENCFF761LVF 622241 ENCODE Processing Pipeline 82cde5f6a61c1ca6f6481f6ea7aac215 https://www.encodeproject.org/files/ENCFF034QTH/@@download/ENCFF034QTH.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF695WVC bam unfiltered alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF122VYX, ENCFF680BTD 2915101587 ENCODE Processing Pipeline f8f451b68d1587c7aa6ebd830aa58b58 https://www.encodeproject.org/files/ENCFF695WVC/@@download/ENCFF695WVC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF781OHL bam unfiltered alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF030PAP, ENCFF861UVB 3350100060 ENCODE Processing Pipeline 112eadb158d91d02abe09ff57827fcd6 https://www.encodeproject.org/files/ENCFF781OHL/@@download/ENCFF781OHL.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF907CDE bam alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF122VYX, ENCFF680BTD 1333035792 ENCODE Processing Pipeline 00fa3c75f18c62d01c1bb4c2e746a153 https://www.encodeproject.org/files/ENCFF907CDE/@@download/ENCFF907CDE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF147WZA bam alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF030PAP, ENCFF861UVB 1479450884 ENCODE Processing Pipeline 88115c11364bd6c48d50a06c2add0ff5 https://www.encodeproject.org/files/ENCFF147WZA/@@download/ENCFF147WZA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF765XOD bigBed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF471ZOJ 2224230 ENCODE Processing Pipeline 94f6081d25edcd429ef5a6a66d7ea8f0 https://www.encodeproject.org/files/ENCFF765XOD/@@download/ENCFF765XOD.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF170HBG bigBed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF650FNV 3234213 ENCODE Processing Pipeline eb3670be021e6c794f1ef2cd518c9bff https://www.encodeproject.org/files/ENCFF170HBG/@@download/ENCFF170HBG.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF702PUR bigWig signal p-value ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF147WZA, ENCFF876QJH 619187214 ENCODE Processing Pipeline 1c4fad97a83730dc19cdda040b5878de https://www.encodeproject.org/files/ENCFF702PUR/@@download/ENCFF702PUR.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF650FNV bed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF147WZA, ENCFF200JPL, ENCFF876QJH, ENCFF907CDE 1661067 ENCODE Processing Pipeline 00b86137109eaa17ce9ecac7b24ea540 https://www.encodeproject.org/files/ENCFF650FNV/@@download/ENCFF650FNV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF471ZOJ bed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF147WZA, ENCFF876QJH 1051198 ENCODE Processing Pipeline f1a69099e21b5a174e8c77f27ca67d31 https://www.encodeproject.org/files/ENCFF471ZOJ/@@download/ENCFF471ZOJ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF717KFF bed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF200JPL, ENCFF907CDE 926544 ENCODE Processing Pipeline 33a37cab08574b4119c3a2943a797977 https://www.encodeproject.org/files/ENCFF717KFF/@@download/ENCFF717KFF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF736JLU bigBed narrowPeak peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF717KFF 2001496 ENCODE Processing Pipeline e53941b71c3c7e9a453c8a6c236c225c https://www.encodeproject.org/files/ENCFF736JLU/@@download/ENCFF736JLU.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF360HYG bigWig signal p-value ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF147WZA, ENCFF200JPL, ENCFF876QJH, ENCFF907CDE 1009768857 ENCODE Processing Pipeline c419dad66f0bf27a0811f39c974111b5 https://www.encodeproject.org/files/ENCFF360HYG/@@download/ENCFF360HYG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF577WZP bigWig fold change over control ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF147WZA, ENCFF200JPL, ENCFF876QJH, ENCFF907CDE 1073846375 ENCODE Processing Pipeline 94b224a6d5e1acd878fbe86e919d458e https://www.encodeproject.org/files/ENCFF577WZP/@@download/ENCFF577WZP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF931TSL bigWig signal p-value ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF200JPL, ENCFF907CDE 470535308 ENCODE Processing Pipeline c2390514f8ad0ae3397309014ddfa92d https://www.encodeproject.org/files/ENCFF931TSL/@@download/ENCFF931TSL.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF619XAA bigWig fold change over control ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF147WZA, ENCFF876QJH 558586055 ENCODE Processing Pipeline 86ba703db5558db344a424b88fd74393 https://www.encodeproject.org/files/ENCFF619XAA/@@download/ENCFF619XAA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF684EBU bigWig fold change over control ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF200JPL, ENCFF907CDE 534074571 ENCODE Processing Pipeline 9ad3eb4d59051c13f8ec3c2eb90ca329 https://www.encodeproject.org/files/ENCFF684EBU/@@download/ENCFF684EBU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF829KAE bed narrowPeak replicated peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF471ZOJ, ENCFF650FNV, ENCFF717KFF 630166 ENCODE Processing Pipeline 483e276bb6db117b8f29007ed5df71dc https://www.encodeproject.org/files/ENCFF829KAE/@@download/ENCFF829KAE.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF664YZO bigBed narrowPeak replicated peaks ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF829KAE 1226248 ENCODE Processing Pipeline ae7b41bdfc369a0e9823b2c76996281d https://www.encodeproject.org/files/ENCFF664YZO/@@download/ENCFF664YZO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF002AFU fastq reads ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1395753540 Bing Ren, UCSD 52a7f478616ba03d6e43df47a1fdf00f SRA:SRR3651861 https://www.encodeproject.org/files/ENCFF002AFU/@@download/ENCFF002AFU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQT/ released mild to moderate bottlenecking, low read depth ENCFF002AFW fastq reads ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2099377439 Bing Ren, UCSD 6ff5ebcca9d52a9c6ddad0eb6002c4e1 SRA:SRR3651862 https://www.encodeproject.org/files/ENCFF002AFW/@@download/ENCFF002AFW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQX/ released mild to moderate bottlenecking, low read depth ENCFF783YDX bam alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFW, ENCFF806TVZ 1600972542 ENCODE Processing Pipeline 9d5916dcb10229f134aa30bb5c69aad3 https://www.encodeproject.org/files/ENCFF783YDX/@@download/ENCFF783YDX.bam mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF964XYN bam alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFU, ENCFF806TVZ 1106568030 ENCODE Processing Pipeline a1319e0ea2a68b66cf44600f40c2749f https://www.encodeproject.org/files/ENCFF964XYN/@@download/ENCFF964XYN.bam mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF021KRV bed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF431MET, ENCFF783YDX, ENCFF964XYN 1686670 ENCODE Processing Pipeline 4bec199ba0e4a22c1640572372fdc48d https://www.encodeproject.org/files/ENCFF021KRV/@@download/ENCFF021KRV.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF878MMR bed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF783YDX 1517956 ENCODE Processing Pipeline 90ad8f47fb5ff3038ad6aa631e92e910 https://www.encodeproject.org/files/ENCFF878MMR/@@download/ENCFF878MMR.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF233NLA bigBed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF878MMR 3466647 ENCODE Processing Pipeline ec007b02c779e6f82085cba1b64f097b https://www.encodeproject.org/files/ENCFF233NLA/@@download/ENCFF233NLA.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF339HLQ bigBed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF021KRV 3786287 ENCODE Processing Pipeline af50d179c7c7e5d933abfb1b898db832 https://www.encodeproject.org/files/ENCFF339HLQ/@@download/ENCFF339HLQ.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF959QLW bed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF964XYN 1428135 ENCODE Processing Pipeline b49b50f196c3e16b5361fd98934ec380 https://www.encodeproject.org/files/ENCFF959QLW/@@download/ENCFF959QLW.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF827DIY bigBed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF959QLW 3376485 ENCODE Processing Pipeline dba172d9395345f9e26f4da9526b0e49 https://www.encodeproject.org/files/ENCFF827DIY/@@download/ENCFF827DIY.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF775GGF bigWig signal p-value ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF783YDX 518870987 ENCODE Processing Pipeline b5a52add7cba39b4d878528548c9757f https://www.encodeproject.org/files/ENCFF775GGF/@@download/ENCFF775GGF.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF330ULB bigWig signal p-value ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF964XYN 549080181 ENCODE Processing Pipeline 8f15925dd6872f74d0b2268eacf210b4 https://www.encodeproject.org/files/ENCFF330ULB/@@download/ENCFF330ULB.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF510JLJ bigWig signal p-value ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF431MET, ENCFF783YDX, ENCFF964XYN 714108492 ENCODE Processing Pipeline 2be5e05ee1a278851d0ba31a8107ee18 https://www.encodeproject.org/files/ENCFF510JLJ/@@download/ENCFF510JLJ.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF316XSR bigWig fold change over control ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF964XYN 492759174 ENCODE Processing Pipeline a8a27059028502a0a870460797cc5d73 https://www.encodeproject.org/files/ENCFF316XSR/@@download/ENCFF316XSR.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF863WAC bigWig fold change over control ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF783YDX 609353698 ENCODE Processing Pipeline fbeaa9320096ae1a93f90219988f64f3 https://www.encodeproject.org/files/ENCFF863WAC/@@download/ENCFF863WAC.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF094XBG bigWig fold change over control ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF431MET, ENCFF783YDX, ENCFF964XYN 850596985 ENCODE Processing Pipeline e944c91aaace6257fc95da8ada91b6c6 https://www.encodeproject.org/files/ENCFF094XBG/@@download/ENCFF094XBG.bigWig mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF917PVE bed narrowPeak replicated peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF021KRV, ENCFF878MMR, ENCFF959QLW 1144458 ENCODE Processing Pipeline c62ac8ea6af19781b7c61a1094730d0f https://www.encodeproject.org/files/ENCFF917PVE/@@download/ENCFF917PVE.bed.gz mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF179TXI bigBed narrowPeak replicated peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF917PVE 2756102 ENCODE Processing Pipeline 01aae47c5f6252f2bbfc056837d96fc0 https://www.encodeproject.org/files/ENCFF179TXI/@@download/ENCFF179TXI.bigBed mm10-minimal archived mild to moderate bottlenecking, low read depth ENCFF570FNV bam unfiltered alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFU, ENCFF018NEO 1557087073 ENCODE Processing Pipeline 1ab6829a84e87e07444be4a849c48d3e https://www.encodeproject.org/files/ENCFF570FNV/@@download/ENCFF570FNV.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF441XUJ bam unfiltered alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFW, ENCFF018NEO 2212495169 ENCODE Processing Pipeline c9c19997aec1ce922f06c8d60f05a517 https://www.encodeproject.org/files/ENCFF441XUJ/@@download/ENCFF441XUJ.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF752PJZ bam alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFU, ENCFF018NEO 1106322054 ENCODE Processing Pipeline b098feab040d998ee53bae60814abd2e https://www.encodeproject.org/files/ENCFF752PJZ/@@download/ENCFF752PJZ.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF324VCI bam alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFW, ENCFF018NEO 1600681024 ENCODE Processing Pipeline 38fd64871c07955a8dd43383a0903de6 https://www.encodeproject.org/files/ENCFF324VCI/@@download/ENCFF324VCI.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF209RWO bed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF316JOV, ENCFF683NKA, ENCFF752PJZ 1088541 ENCODE Processing Pipeline bcbf26c31d435fb21dae87f32f4b6979 https://www.encodeproject.org/files/ENCFF209RWO/@@download/ENCFF209RWO.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF090KCN bed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF316JOV, ENCFF324VCI, ENCFF683NKA 1518277 ENCODE Processing Pipeline 213469a5687004e4cf385f1da7a73a93 https://www.encodeproject.org/files/ENCFF090KCN/@@download/ENCFF090KCN.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF357UTG bed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF316JOV, ENCFF324VCI, ENCFF683NKA, ENCFF752PJZ 1687961 ENCODE Processing Pipeline d7d6543724b6e3dad52204f41fbce123 https://www.encodeproject.org/files/ENCFF357UTG/@@download/ENCFF357UTG.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF335PDW bigBed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF209RWO 2640538 ENCODE Processing Pipeline dd93fda5b06ea91a560054f7737a26cf https://www.encodeproject.org/files/ENCFF335PDW/@@download/ENCFF335PDW.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF576YGB bigBed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF090KCN 3468296 ENCODE Processing Pipeline ffa517cd7791fb640006050d78bf2862 https://www.encodeproject.org/files/ENCFF576YGB/@@download/ENCFF576YGB.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF047AQG bigBed narrowPeak peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF357UTG 3791594 ENCODE Processing Pipeline d2e2574db3e5c3b382475390c210e33c https://www.encodeproject.org/files/ENCFF047AQG/@@download/ENCFF047AQG.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF755TMF bigWig signal p-value ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF316JOV, ENCFF683NKA, ENCFF752PJZ 487260389 ENCODE Processing Pipeline 7b44c0175ad866a2deb7a90a35dfba7f https://www.encodeproject.org/files/ENCFF755TMF/@@download/ENCFF755TMF.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF834AZP bigWig signal p-value ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF316JOV, ENCFF324VCI, ENCFF683NKA 620662197 ENCODE Processing Pipeline 118a87a1d656cbb6dc51fea79c06d9bc https://www.encodeproject.org/files/ENCFF834AZP/@@download/ENCFF834AZP.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF014ZBN bigWig signal p-value ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF316JOV, ENCFF324VCI, ENCFF683NKA, ENCFF752PJZ 816652531 ENCODE Processing Pipeline fb11774072596994fdc538bfe80c2bcb https://www.encodeproject.org/files/ENCFF014ZBN/@@download/ENCFF014ZBN.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF713GBH bigWig fold change over control ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF316JOV, ENCFF683NKA, ENCFF752PJZ 451891691 ENCODE Processing Pipeline d3693f80c158761d96dad17ef877e4aa https://www.encodeproject.org/files/ENCFF713GBH/@@download/ENCFF713GBH.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF904MCD bigWig fold change over control ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF316JOV, ENCFF324VCI, ENCFF683NKA 606637100 ENCODE Processing Pipeline d92ec7bc5d632f08f07f879b4ec1fa29 https://www.encodeproject.org/files/ENCFF904MCD/@@download/ENCFF904MCD.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF665WCP bigWig fold change over control ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF316JOV, ENCFF324VCI, ENCFF683NKA, ENCFF752PJZ 850464003 ENCODE Processing Pipeline 810843cc96dd5000b9d9cc1f26da3be1 https://www.encodeproject.org/files/ENCFF665WCP/@@download/ENCFF665WCP.bigWig mm10 released mild to moderate bottlenecking, low read depth ENCFF469QLC bigBed narrowPeak replicated peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF764WNW 2701017 ENCODE Processing Pipeline b9aa7a5f6b2a8d83fb34bcf71e657228 https://www.encodeproject.org/files/ENCFF469QLC/@@download/ENCFF469QLC.bigBed mm10 released mild to moderate bottlenecking, low read depth ENCFF764WNW bed narrowPeak replicated peaks ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF090KCN, ENCFF209RWO, ENCFF357UTG 1119214 ENCODE Processing Pipeline e1551c191b490e503ccf78c3fc221641 https://www.encodeproject.org/files/ENCFF764WNW/@@download/ENCFF764WNW.bed.gz mm10 released mild to moderate bottlenecking, low read depth ENCFF001LHP bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIB 285853487 Bing Ren, UCSD 0b7d4ee465831e5623f9c70f71b95b89 https://www.encodeproject.org/files/ENCFF001LHP/@@download/ENCFF001LHP.bam mm9 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LHQ bigBed broadPeak peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001XZZ 209600 Bing Ren, UCSD ba8848859b05a8330d6bcdff3ac4b348 https://www.encodeproject.org/files/ENCFF001LHQ/@@download/ENCFF001LHQ.bigBed mm9 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LHR bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LHZ 349207520 Bing Ren, UCSD 43b486694184af679a0f6a31355fe1a3 https://www.encodeproject.org/files/ENCFF001LHR/@@download/ENCFF001LHR.bam mm9 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LHS bigWig signal ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHP, ENCFF001LHR 58933309 Bing Ren, UCSD 77251fc365230099cc7419997835015a https://www.encodeproject.org/files/ENCFF001LHS/@@download/ENCFF001LHS.bigWig mm9 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LHZ fastq reads ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 338545330 Bing Ren, UCSD c0ecd430586e0d9cced0ff16f723d705 https://www.encodeproject.org/files/ENCFF001LHZ/@@download/ENCFF001LHZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAK/ released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LIB fastq reads ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 798656964 Bing Ren, UCSD c0bcd486e0fa66d7e27754f47495d2c1 https://www.encodeproject.org/files/ENCFF001LIB/@@download/ENCFF001LIB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAM/ released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF001XZZ bed broadPeak peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LHP, ENCFF001LHR 105716 Bing Ren, UCSD 5496eb2b7b0bb33568a7cb293fbe28cd https://www.encodeproject.org/files/ENCFF001XZZ/@@download/ENCFF001XZZ.bed.gz mm9 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF121HGN bam unfiltered alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHZ, ENCFF018NEO 392944117 ENCODE Processing Pipeline 09b1e9a856fff47a5c80a0ff8ceca2e6 https://www.encodeproject.org/files/ENCFF121HGN/@@download/ENCFF121HGN.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF962THR bam unfiltered alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIB, ENCFF018NEO 816972155 ENCODE Processing Pipeline 728b40b9bf86e22814a81de35fbc782a https://www.encodeproject.org/files/ENCFF962THR/@@download/ENCFF962THR.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF148NIG bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHZ, ENCFF018NEO 239460877 ENCODE Processing Pipeline 390d9114197bd8c5a3d3cfc3a85791d3 https://www.encodeproject.org/files/ENCFF148NIG/@@download/ENCFF148NIG.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF341KOD bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIB, ENCFF018NEO 276369068 ENCODE Processing Pipeline cb9699668e7651c07f140f29eec0193c https://www.encodeproject.org/files/ENCFF341KOD/@@download/ENCFF341KOD.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF500JKB bigWig fold change over control ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF341KOD, ENCFF389ARL 111287279 ENCODE Processing Pipeline 4791c5823d7e208c99d5967fa1cff2a5 https://www.encodeproject.org/files/ENCFF500JKB/@@download/ENCFF500JKB.bigWig mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF550YDF bigWig fold change over control ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF148NIG, ENCFF389ARL 111625718 ENCODE Processing Pipeline 4700e6ced8f7b7c52db081c33be0ab1d https://www.encodeproject.org/files/ENCFF550YDF/@@download/ENCFF550YDF.bigWig mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF625PME bigWig fold change over control ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF148NIG, ENCFF341KOD, ENCFF389ARL 198647603 ENCODE Processing Pipeline 33ff406c6a071bfcf35983840bfd61a9 https://www.encodeproject.org/files/ENCFF625PME/@@download/ENCFF625PME.bigWig mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF260NKO bigWig signal p-value ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF341KOD, ENCFF389ARL 221366918 ENCODE Processing Pipeline ec4a944ef930e8d0e436fb9d8bb4a985 https://www.encodeproject.org/files/ENCFF260NKO/@@download/ENCFF260NKO.bigWig mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF462YFZ bigWig signal p-value ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF148NIG, ENCFF341KOD, ENCFF389ARL 284833342 ENCODE Processing Pipeline 12d690ea630003b462c1e3b594750bdf https://www.encodeproject.org/files/ENCFF462YFZ/@@download/ENCFF462YFZ.bigWig mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF245CWG bed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF148NIG, ENCFF389ARL 1338099 ENCODE Processing Pipeline ed95e62d1b0843805987b1403cfa1d8d https://www.encodeproject.org/files/ENCFF245CWG/@@download/ENCFF245CWG.bed.gz mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF882ZPE bigWig signal p-value ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF148NIG, ENCFF389ARL 300078593 ENCODE Processing Pipeline f4c174ac8a3cb60a5e9a9c96f583b2cc https://www.encodeproject.org/files/ENCFF882ZPE/@@download/ENCFF882ZPE.bigWig mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF161DMN bed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF341KOD, ENCFF389ARL 2681240 ENCODE Processing Pipeline 09f8865134b6d07242d7096811eb2886 https://www.encodeproject.org/files/ENCFF161DMN/@@download/ENCFF161DMN.bed.gz mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF084NYP bed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF148NIG, ENCFF341KOD, ENCFF389ARL 4955846 ENCODE Processing Pipeline 225588e4671204393ea4a9057d2651ec https://www.encodeproject.org/files/ENCFF084NYP/@@download/ENCFF084NYP.bed.gz mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF701QVZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF084NYP 10523540 ENCODE Processing Pipeline 9914adfff7574bfb7b911550c0d89bd4 https://www.encodeproject.org/files/ENCFF701QVZ/@@download/ENCFF701QVZ.bigBed mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF250DWD bigBed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DMN 6477412 ENCODE Processing Pipeline 7749d577347a0e6c13e3035faf3798f3 https://www.encodeproject.org/files/ENCFF250DWD/@@download/ENCFF250DWD.bigBed mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF029GRM bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF788VGC 742922 ENCODE Processing Pipeline 9f8d26365c09f1b0eaa8630e24994512 https://www.encodeproject.org/files/ENCFF029GRM/@@download/ENCFF029GRM.bigBed mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF283DIO bigBed narrowPeak peaks and background as input for IDR ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF245CWG 2838361 ENCODE Processing Pipeline 37351309f1b62fa5eff2f45207643382 https://www.encodeproject.org/files/ENCFF283DIO/@@download/ENCFF283DIO.bigBed mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF877CUQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF310XZO 652518 ENCODE Processing Pipeline 4b8b9f03451ecfa55a889802efa2fb2d https://www.encodeproject.org/files/ENCFF877CUQ/@@download/ENCFF877CUQ.bigBed mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF310XZO bed narrowPeak conservative idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF084NYP, ENCFF161DMN, ENCFF245CWG, ENCFF547MET 269783 ENCODE Processing Pipeline 4486a9515328438736f64e9113ad4999 https://www.encodeproject.org/files/ENCFF310XZO/@@download/ENCFF310XZO.bed.gz mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF788VGC bed narrowPeak optimal idr thresholded peaks ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF084NYP, ENCFF161DMN, ENCFF245CWG, ENCFF547MET 325999 ENCODE Processing Pipeline 63a89f00daa1e6e86535addd162cff41 https://www.encodeproject.org/files/ENCFF788VGC/@@download/ENCFF788VGC.bed.gz mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LNV bigBed broadPeak peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAP 476581 Bing Ren, UCSD 259ea9f94be5e7b3a01e3dc0a049c906 https://www.encodeproject.org/files/ENCFF001LNV/@@download/ENCFF001LNV.bigBed mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001LNW bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LOC 257814024 Bing Ren, UCSD 7945ab7c72920afc6c0e3e1fbdfd2bf2 https://www.encodeproject.org/files/ENCFF001LNW/@@download/ENCFF001LNW.bam mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001LNX bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LOH 586366538 Bing Ren, UCSD b73fe85e9f59a1fc0a37d50c40eaff9e https://www.encodeproject.org/files/ENCFF001LNX/@@download/ENCFF001LNX.bam mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001LNY bigWig signal ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNW, ENCFF001LNX 68390157 Bing Ren, UCSD 308d42a5b865dbd0f5ea8ffe3071a703 https://www.encodeproject.org/files/ENCFF001LNY/@@download/ENCFF001LNY.bigWig mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001LOC fastq reads ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 285242199 Bing Ren, UCSD 870ffd53434093858490f1c0ca2d60d0 https://www.encodeproject.org/files/ENCFF001LOC/@@download/ENCFF001LOC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOQ/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001LOH fastq reads ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 907765095 Bing Ren, UCSD 774ac4e9d99baacb0212eb60dee5b400 https://www.encodeproject.org/files/ENCFF001LOH/@@download/ENCFF001LOH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOV/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001YAP bed broadPeak peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNW, ENCFF001LNX 254788 Bing Ren, UCSD 689c55125e2ef6f34e6f15c9e650bb3e https://www.encodeproject.org/files/ENCFF001YAP/@@download/ENCFF001YAP.bed.gz mm9 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF069IYJ bam unfiltered alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOC, ENCFF018NEO 328451276 ENCODE Processing Pipeline 4b3dcb7b33775f9db2475c54b8b58b80 https://www.encodeproject.org/files/ENCFF069IYJ/@@download/ENCFF069IYJ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF048SKE bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOC, ENCFF018NEO 207606107 ENCODE Processing Pipeline 6c0dd57badf4a2ccfef0bea377198d7d https://www.encodeproject.org/files/ENCFF048SKE/@@download/ENCFF048SKE.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF089LQS bam unfiltered alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOH, ENCFF018NEO 973466221 ENCODE Processing Pipeline 172d15707923af181b9f9e31ebe267fd https://www.encodeproject.org/files/ENCFF089LQS/@@download/ENCFF089LQS.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF105EZY bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOH, ENCFF018NEO 499236178 ENCODE Processing Pipeline 7313694795f30b8a36bdb80501981090 https://www.encodeproject.org/files/ENCFF105EZY/@@download/ENCFF105EZY.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF457TAX bigWig fold change over control ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 165574545 ENCODE Processing Pipeline 15a7b4fff4a044387ed5a11822f14c7a https://www.encodeproject.org/files/ENCFF457TAX/@@download/ENCFF457TAX.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF938KPF bed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF048SKE, ENCFF493MBH, ENCFF738EUE 1800310 ENCODE Processing Pipeline a4741661fbc63fc194e4998d2b755c9b https://www.encodeproject.org/files/ENCFF938KPF/@@download/ENCFF938KPF.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF662WJY bigBed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF460DBD 7841692 ENCODE Processing Pipeline c859fee7012a3b2a7deb3450bb2120ba https://www.encodeproject.org/files/ENCFF662WJY/@@download/ENCFF662WJY.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF358JEC bigWig signal p-value ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF048SKE, ENCFF493MBH, ENCFF738EUE 197571550 ENCODE Processing Pipeline 8c5334e09dd11771f95c4a21c9a7fcb6 https://www.encodeproject.org/files/ENCFF358JEC/@@download/ENCFF358JEC.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF317TML bigWig signal p-value ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF048SKE, ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 238316260 ENCODE Processing Pipeline 4e6bfcd07543f684020c23771b9d17d3 https://www.encodeproject.org/files/ENCFF317TML/@@download/ENCFF317TML.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF790BWV bigWig fold change over control ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF048SKE, ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 226408482 ENCODE Processing Pipeline 9290b346eba27030ce98ee3dea40fd0b https://www.encodeproject.org/files/ENCFF790BWV/@@download/ENCFF790BWV.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF752OXC bed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF048SKE, ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 3004501 ENCODE Processing Pipeline f9a029d982ec580973b9d6bd1c1e9751 https://www.encodeproject.org/files/ENCFF752OXC/@@download/ENCFF752OXC.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF505ATZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF752OXC 6303233 ENCODE Processing Pipeline 1b013409477258a10cccaef5ebab22b6 https://www.encodeproject.org/files/ENCFF505ATZ/@@download/ENCFF505ATZ.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF197JZI bigWig signal p-value ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 240219990 ENCODE Processing Pipeline 56d69eeb44eb73f68a3c99663350c6f4 https://www.encodeproject.org/files/ENCFF197JZI/@@download/ENCFF197JZI.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF235SIA bed narrowPeak conservative idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF460DBD, ENCFF547MET, ENCFF752OXC, ENCFF938KPF 269243 ENCODE Processing Pipeline 31fa08da467b0db7fd5b04f5d8fdaeb6 https://www.encodeproject.org/files/ENCFF235SIA/@@download/ENCFF235SIA.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF821OXE bigBed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF938KPF 4096849 ENCODE Processing Pipeline 7ec8545820dfb873c5b54ff47b32510f https://www.encodeproject.org/files/ENCFF821OXE/@@download/ENCFF821OXE.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF753KZV bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF235SIA 639391 ENCODE Processing Pipeline c605e1ad03b0635bba1dd2319316cf71 https://www.encodeproject.org/files/ENCFF753KZV/@@download/ENCFF753KZV.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF392ACD bigWig fold change over control ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF048SKE, ENCFF493MBH, ENCFF738EUE 89727683 ENCODE Processing Pipeline dae9bce5a21941d58938f16555b0be1f https://www.encodeproject.org/files/ENCFF392ACD/@@download/ENCFF392ACD.bigWig mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF460DBD bed narrowPeak peaks and background as input for IDR ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF105EZY, ENCFF493MBH, ENCFF738EUE 3526311 ENCODE Processing Pipeline fc321db7d909ea6ccf042b52a53ff120 https://www.encodeproject.org/files/ENCFF460DBD/@@download/ENCFF460DBD.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF988EWY bed narrowPeak optimal idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF460DBD, ENCFF547MET, ENCFF752OXC, ENCFF938KPF 364466 ENCODE Processing Pipeline 116363c42358bf65b2d8d4f5632a329b https://www.encodeproject.org/files/ENCFF988EWY/@@download/ENCFF988EWY.bed.gz mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF621DUX bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF988EWY 788219 ENCODE Processing Pipeline aa5a77b9d5609722fd329d89dd751d17 https://www.encodeproject.org/files/ENCFF621DUX/@@download/ENCFF621DUX.bigBed mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF001NGP bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NGR 401862814 Michael Snyder, Stanford 0d3eb7e86f44f099bc017dd29105c7df https://www.encodeproject.org/files/ENCFF001NGP/@@download/ENCFF001NGP.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NGQ bigBed narrowPeak peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YHY 1945962 Michael Snyder, Stanford bd6c65ba8674a6a41e8752b892879299 https://www.encodeproject.org/files/ENCFF001NGQ/@@download/ENCFF001NGQ.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NGR fastq reads ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 913008208 Michael Snyder, Stanford e0234974ff4469a0b05b8439a9921721 https://www.encodeproject.org/files/ENCFF001NGR/@@download/ENCFF001NGR.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NGT fastq reads ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1042836880 Michael Snyder, Stanford 008aa46cbfb7b9b3ab6219f224cbd100 https://www.encodeproject.org/files/ENCFF001NGT/@@download/ENCFF001NGT.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NGV bigWig signal ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NGP, ENCFF001NGW 333773992 Michael Snyder, Stanford 5da91dfc539da8bf16ec51968c860200 https://www.encodeproject.org/files/ENCFF001NGV/@@download/ENCFF001NGV.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001NGW bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NGT 510604637 Michael Snyder, Stanford e4076da58385fd97120878e210e00279 https://www.encodeproject.org/files/ENCFF001NGW/@@download/ENCFF001NGW.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF001YHY bed narrowPeak peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NGP, ENCFF001NGW 845208 Michael Snyder, Stanford 18cd0bc77df48bc6a7dd46e7e7a096e8 https://www.encodeproject.org/files/ENCFF001YHY/@@download/ENCFF001YHY.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF967BDV bam unfiltered alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NGT, ENCFF018NEO 1110977690 ENCODE Processing Pipeline 802e31cd162c066cb78997e7bdd84de7 https://www.encodeproject.org/files/ENCFF967BDV/@@download/ENCFF967BDV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF708HJG bam unfiltered alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NGR, ENCFF018NEO 948262139 ENCODE Processing Pipeline 70ac14a0a08df80b31c5ac6bcd2a262d https://www.encodeproject.org/files/ENCFF708HJG/@@download/ENCFF708HJG.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF315SAY bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NGT, ENCFF018NEO 747126420 ENCODE Processing Pipeline 57048197294ac52109e37a49524dd167 https://www.encodeproject.org/files/ENCFF315SAY/@@download/ENCFF315SAY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF554HHU bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NGR, ENCFF018NEO 547383652 ENCODE Processing Pipeline 12ee59cf0a635c06b1eb7b7f02b7a4aa https://www.encodeproject.org/files/ENCFF554HHU/@@download/ENCFF554HHU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF451TOD bigWig signal p-value ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF554HHU 239663948 ENCODE Processing Pipeline 006ba56896fbe5cf2fba4aa7fe61e5e2 https://www.encodeproject.org/files/ENCFF451TOD/@@download/ENCFF451TOD.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF757SSH bigWig signal p-value ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF315SAY, ENCFF339ZWC 238832501 ENCODE Processing Pipeline db58d0b7387f382ab9daaaff8907aaf6 https://www.encodeproject.org/files/ENCFF757SSH/@@download/ENCFF757SSH.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF203IHO bigWig fold change over control ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF554HHU 233380289 ENCODE Processing Pipeline 1cb4d61263e0701cd470718da79881dc https://www.encodeproject.org/files/ENCFF203IHO/@@download/ENCFF203IHO.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF618TKD bigWig signal p-value ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF315SAY, ENCFF339ZWC, ENCFF554HHU 217853636 ENCODE Processing Pipeline 530647558bd299ac60d356a5e17a1355 https://www.encodeproject.org/files/ENCFF618TKD/@@download/ENCFF618TKD.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF383WRW bigWig fold change over control ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF315SAY, ENCFF339ZWC 296112961 ENCODE Processing Pipeline b212cfc9c431da55272d2275e381e126 https://www.encodeproject.org/files/ENCFF383WRW/@@download/ENCFF383WRW.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF285JAZ bigBed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF821HYG 7835677 ENCODE Processing Pipeline 83f995f63d593bcb14af26bb12e84952 https://www.encodeproject.org/files/ENCFF285JAZ/@@download/ENCFF285JAZ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF759NPU bigBed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF268GPJ 12978698 ENCODE Processing Pipeline ac4d6f5152780a5e8414d251e8e03b16 https://www.encodeproject.org/files/ENCFF759NPU/@@download/ENCFF759NPU.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF165JVA bigWig fold change over control ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF315SAY, ENCFF339ZWC, ENCFF554HHU 464724804 ENCODE Processing Pipeline c75b04eaed8f99b189aa6c94014ee5f0 https://www.encodeproject.org/files/ENCFF165JVA/@@download/ENCFF165JVA.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF821HYG bed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF315SAY, ENCFF339ZWC 3512449 ENCODE Processing Pipeline 699c4a9c2ced2e98d88ed671c81eabe3 https://www.encodeproject.org/files/ENCFF821HYG/@@download/ENCFF821HYG.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF140KQK bigBed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF916JGK 10325390 ENCODE Processing Pipeline a4c1d249f364bc15b97cc2164bfcaba3 https://www.encodeproject.org/files/ENCFF140KQK/@@download/ENCFF140KQK.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF916JGK bed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF554HHU 4872603 ENCODE Processing Pipeline 57b48f8ab3b55912f297353442925534 https://www.encodeproject.org/files/ENCFF916JGK/@@download/ENCFF916JGK.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF268GPJ bed narrowPeak peaks and background as input for IDR ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF315SAY, ENCFF339ZWC, ENCFF554HHU 5784872 ENCODE Processing Pipeline c034b451b5eafa69a535f8da84c7f8a2 https://www.encodeproject.org/files/ENCFF268GPJ/@@download/ENCFF268GPJ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF151RYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF530THK 1036118 ENCODE Processing Pipeline 26f1f12fc6d52cbea62605955e2de894 https://www.encodeproject.org/files/ENCFF151RYZ/@@download/ENCFF151RYZ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF530THK bed narrowPeak optimal idr thresholded peaks ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF268GPJ, ENCFF547MET, ENCFF821HYG, ENCFF916JGK 558681 ENCODE Processing Pipeline 1428adaf1485bbb84bc3895dd2853055 https://www.encodeproject.org/files/ENCFF530THK/@@download/ENCFF530THK.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF932RNG fastq reads ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2483383416 Bing Ren, UCSD c4944570e673639c78ee607a9bd6039c SRA:SRR3653370 https://www.encodeproject.org/files/ENCFF932RNG/@@download/ENCFF932RNG.fastq.gz Illumina HiSeq 2000 /files/ENCFF324AEZ/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF676UIZ fastq reads ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2582468398 Bing Ren, UCSD 129bb1136445b03caa5a4ec1ff49fd9b SRA:SRR3653371 https://www.encodeproject.org/files/ENCFF676UIZ/@@download/ENCFF676UIZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF637RQH/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF300ZWX bam alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF806TVZ, ENCFF932RNG 1645581926 ENCODE Processing Pipeline 9a9b9d7bc3c94d64af40b93c58a057be https://www.encodeproject.org/files/ENCFF300ZWX/@@download/ENCFF300ZWX.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF012CSN bam alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF676UIZ, ENCFF806TVZ 1889374010 ENCODE Processing Pipeline 246c42f6ee593160b090957338b5fe80 https://www.encodeproject.org/files/ENCFF012CSN/@@download/ENCFF012CSN.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF005VWC bed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF012CSN, ENCFF069WCH, ENCFF101KOM 827809 ENCODE Processing Pipeline 335c7e221f999b5fab53fdee99d60f05 https://www.encodeproject.org/files/ENCFF005VWC/@@download/ENCFF005VWC.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF677KLB bed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101KOM, ENCFF300ZWX 858029 ENCODE Processing Pipeline 57e99bd4b4a6f18d60fe00808a4b4d16 https://www.encodeproject.org/files/ENCFF677KLB/@@download/ENCFF677KLB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF185SUR bed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF012CSN, ENCFF069WCH, ENCFF101KOM, ENCFF300ZWX 946480 ENCODE Processing Pipeline e74096a0fd815665ce469346973595d3 https://www.encodeproject.org/files/ENCFF185SUR/@@download/ENCFF185SUR.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF310AFV bigBed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF185SUR 2882108 ENCODE Processing Pipeline 42ccd8e54f7b21e4db7ff0627cf90bea https://www.encodeproject.org/files/ENCFF310AFV/@@download/ENCFF310AFV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF158TYJ bigBed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF005VWC 2589384 ENCODE Processing Pipeline c3d7ce3493e2532a8812b7a16336f1ec https://www.encodeproject.org/files/ENCFF158TYJ/@@download/ENCFF158TYJ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF608AVC bigBed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF677KLB 2677364 ENCODE Processing Pipeline b529421c221b5685eaac47c56d561917 https://www.encodeproject.org/files/ENCFF608AVC/@@download/ENCFF608AVC.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF455XQQ bigWig signal p-value ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF012CSN, ENCFF069WCH, ENCFF101KOM 567970643 ENCODE Processing Pipeline d17885f3559fd795b80ba4ae9cb54d76 https://www.encodeproject.org/files/ENCFF455XQQ/@@download/ENCFF455XQQ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF821CBI bigWig signal p-value ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101KOM, ENCFF300ZWX 514353070 ENCODE Processing Pipeline d6bca384fad228c01b809f48cbbde706 https://www.encodeproject.org/files/ENCFF821CBI/@@download/ENCFF821CBI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF911IEV bigWig signal p-value ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF012CSN, ENCFF069WCH, ENCFF101KOM, ENCFF300ZWX 756641391 ENCODE Processing Pipeline 6df6285bde0d6c9659039b63c74438d9 https://www.encodeproject.org/files/ENCFF911IEV/@@download/ENCFF911IEV.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF072MVB bigWig fold change over control ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF012CSN, ENCFF069WCH, ENCFF101KOM 672535059 ENCODE Processing Pipeline 3f5a74315de0ef5c4bbc4c6f0756383d https://www.encodeproject.org/files/ENCFF072MVB/@@download/ENCFF072MVB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF542LGO bigWig fold change over control ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF101KOM, ENCFF300ZWX 538951701 ENCODE Processing Pipeline 89ec187e593eac8c6a2802f103054749 https://www.encodeproject.org/files/ENCFF542LGO/@@download/ENCFF542LGO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF456GAV bed narrowPeak replicated peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF005VWC, ENCFF185SUR, ENCFF677KLB 1032487 ENCODE Processing Pipeline d55f810bd6c681c5ce2fab5508a92b92 https://www.encodeproject.org/files/ENCFF456GAV/@@download/ENCFF456GAV.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF238SQS bigBed narrowPeak replicated peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF456GAV 2312283 ENCODE Processing Pipeline 995bc3ca342b692e6258d417e351109d https://www.encodeproject.org/files/ENCFF238SQS/@@download/ENCFF238SQS.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF042OXR bigWig fold change over control ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF012CSN, ENCFF069WCH, ENCFF101KOM, ENCFF300ZWX 967503164 ENCODE Processing Pipeline 8ccc4702bcf31945ae85ddffcba1162c https://www.encodeproject.org/files/ENCFF042OXR/@@download/ENCFF042OXR.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF500NHA bam unfiltered alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF932RNG 2694547961 ENCODE Processing Pipeline af79a8cbb5bff91b2aa7296155e3a7e1 https://www.encodeproject.org/files/ENCFF500NHA/@@download/ENCFF500NHA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF628HKW bam unfiltered alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF676UIZ 2838376914 ENCODE Processing Pipeline b76006e9ada83fa10fdd3eb2bd387d32 https://www.encodeproject.org/files/ENCFF628HKW/@@download/ENCFF628HKW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF501EBY bam alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF676UIZ 1889118019 ENCODE Processing Pipeline bcfb7a40c715da2e2eb173286838fe11 https://www.encodeproject.org/files/ENCFF501EBY/@@download/ENCFF501EBY.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF938IJT bam alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF932RNG 1645355639 ENCODE Processing Pipeline 0a629b2cad4f5781ef92450e6e8a4806 https://www.encodeproject.org/files/ENCFF938IJT/@@download/ENCFF938IJT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF109BZP bed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF814RAT, ENCFF938IJT 808293 ENCODE Processing Pipeline f68c23da8714af3a7098b1e642a4d4b5 https://www.encodeproject.org/files/ENCFF109BZP/@@download/ENCFF109BZP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF672FOM bigBed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF163MSC 2682966 ENCODE Processing Pipeline d647e5edc034ce51a84807b5bbb6ba6f https://www.encodeproject.org/files/ENCFF672FOM/@@download/ENCFF672FOM.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF395JCU bed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF501EBY, ENCFF814RAT, ENCFF904KQI, ENCFF938IJT 947699 ENCODE Processing Pipeline 232b1b910ba5a650ee9a12a1a6c143f9 https://www.encodeproject.org/files/ENCFF395JCU/@@download/ENCFF395JCU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF578ZNT bigBed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF109BZP 2554175 ENCODE Processing Pipeline c7e091b7c2fa415fc8079cfd4c53637b https://www.encodeproject.org/files/ENCFF578ZNT/@@download/ENCFF578ZNT.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF163MSC bed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF501EBY, ENCFF904KQI 859481 ENCODE Processing Pipeline 64593b7dabcb4e518254824289441534 https://www.encodeproject.org/files/ENCFF163MSC/@@download/ENCFF163MSC.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF405JUY bigBed narrowPeak peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF395JCU 2851243 ENCODE Processing Pipeline abf35cdbbbac25909d312fa6861e1090 https://www.encodeproject.org/files/ENCFF405JUY/@@download/ENCFF405JUY.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF040IHA bigWig signal p-value ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF501EBY, ENCFF904KQI 613059251 ENCODE Processing Pipeline b57ac1a66e24cd92625cad41ffdf56c9 https://www.encodeproject.org/files/ENCFF040IHA/@@download/ENCFF040IHA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF891UXW bigWig signal p-value ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF814RAT, ENCFF938IJT 555076577 ENCODE Processing Pipeline 5042a92ad912d88d7ee55bbb16c74902 https://www.encodeproject.org/files/ENCFF891UXW/@@download/ENCFF891UXW.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF141GEK bigWig signal p-value ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF501EBY, ENCFF814RAT, ENCFF904KQI, ENCFF938IJT 894886940 ENCODE Processing Pipeline 2298cef9747ff33158df5c93620ae822 https://www.encodeproject.org/files/ENCFF141GEK/@@download/ENCFF141GEK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF017WTG bigWig fold change over control ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF501EBY, ENCFF904KQI 653353668 ENCODE Processing Pipeline dac3623ff1f285030a0c94bdd0d23336 https://www.encodeproject.org/files/ENCFF017WTG/@@download/ENCFF017WTG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF724UXI bigWig fold change over control ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF814RAT, ENCFF938IJT 583898879 ENCODE Processing Pipeline 0ac4e1231e377c51c4f77c73f4bdf4d8 https://www.encodeproject.org/files/ENCFF724UXI/@@download/ENCFF724UXI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF237WUZ bigWig fold change over control ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF501EBY, ENCFF814RAT, ENCFF904KQI, ENCFF938IJT 1168285582 ENCODE Processing Pipeline d9298da14da934f4a36d83401142009d https://www.encodeproject.org/files/ENCFF237WUZ/@@download/ENCFF237WUZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF992ULU bed narrowPeak replicated peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF109BZP, ENCFF163MSC, ENCFF395JCU 1048143 ENCODE Processing Pipeline 2fe5e23855a4cee207bf1c47722f5a27 https://www.encodeproject.org/files/ENCFF992ULU/@@download/ENCFF992ULU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF325VNW bigBed narrowPeak replicated peaks ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF992ULU 2319231 ENCODE Processing Pipeline 16b8b625fe60fab34e1d4aa9f75b6ba6 https://www.encodeproject.org/files/ENCFF325VNW/@@download/ENCFF325VNW.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF001ZUN fastq reads ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 835927227 Bing Ren, UCSD 62e8d5e3e1b9e5168dafa2f8fd3a14dd SRA:SRR3651771 https://www.encodeproject.org/files/ENCFF001ZUN/@@download/ENCFF001ZUN.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUV/ released low read length, low read depth ENCFF001ZUP fastq reads ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 917447154 Bing Ren, UCSD 70637126b4b3bf6b351a1b35510f918e SRA:SRR3651770 https://www.encodeproject.org/files/ENCFF001ZUP/@@download/ENCFF001ZUP.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUW/ released low read length, low read depth ENCFF065BET bam alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUP, ENCFF806TVZ 728776503 ENCODE Processing Pipeline 4c0110c3f932e46a0000cd91f7067883 https://www.encodeproject.org/files/ENCFF065BET/@@download/ENCFF065BET.bam mm10-minimal archived low read length, low read depth ENCFF294AYB bam alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZUN, ENCFF806TVZ 684089380 ENCODE Processing Pipeline 655d23c28ff474f5f49f6e4f6d726b11 https://www.encodeproject.org/files/ENCFF294AYB/@@download/ENCFF294AYB.bam mm10-minimal archived low read length, low read depth ENCFF939RMX bed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF065BET, ENCFF972ZKQ 486725 ENCODE Processing Pipeline 793bd97d1c05db21ed4b6a861633e6a5 https://www.encodeproject.org/files/ENCFF939RMX/@@download/ENCFF939RMX.bed.gz mm10-minimal archived low read length, low read depth ENCFF026JON bed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF065BET, ENCFF294AYB, ENCFF972ZKQ 468800 ENCODE Processing Pipeline 27974be62e8a6b5668c1e509c831fc1d https://www.encodeproject.org/files/ENCFF026JON/@@download/ENCFF026JON.bed.gz mm10-minimal archived low read length, low read depth ENCFF948JAA bed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF294AYB, ENCFF972ZKQ 503358 ENCODE Processing Pipeline ead875abb9257fb020da737bd8731dc8 https://www.encodeproject.org/files/ENCFF948JAA/@@download/ENCFF948JAA.bed.gz mm10-minimal archived low read length, low read depth ENCFF584LZM bigBed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF939RMX 1632448 ENCODE Processing Pipeline 677590a8145406b19a3b02a0654219cc https://www.encodeproject.org/files/ENCFF584LZM/@@download/ENCFF584LZM.bigBed mm10-minimal archived low read length, low read depth ENCFF918IVR bigBed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF948JAA 1673458 ENCODE Processing Pipeline 7f8a8ff9ed2d90e062ab641b3d2bda81 https://www.encodeproject.org/files/ENCFF918IVR/@@download/ENCFF918IVR.bigBed mm10-minimal archived low read length, low read depth ENCFF298SLN bigBed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JON 1567310 ENCODE Processing Pipeline 91b3ddae4ef2e6bd3e1710e97423d853 https://www.encodeproject.org/files/ENCFF298SLN/@@download/ENCFF298SLN.bigBed mm10-minimal archived low read length, low read depth ENCFF178RWW bigWig signal p-value ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF294AYB, ENCFF972ZKQ 350272634 ENCODE Processing Pipeline e3d0646437ad8e10bb87812cdf8bacd8 https://www.encodeproject.org/files/ENCFF178RWW/@@download/ENCFF178RWW.bigWig mm10-minimal archived low read length, low read depth ENCFF734MFH bigWig signal p-value ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF065BET, ENCFF972ZKQ 333274096 ENCODE Processing Pipeline 2a0992f94f0ccb932c28227607dffc82 https://www.encodeproject.org/files/ENCFF734MFH/@@download/ENCFF734MFH.bigWig mm10-minimal archived low read length, low read depth ENCFF150XIB bigWig signal p-value ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF065BET, ENCFF294AYB, ENCFF972ZKQ 449982530 ENCODE Processing Pipeline ba10894527289627565dd9002492503d https://www.encodeproject.org/files/ENCFF150XIB/@@download/ENCFF150XIB.bigWig mm10-minimal archived low read length, low read depth ENCFF257WVD bigWig fold change over control ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF033BGX, ENCFF294AYB, ENCFF972ZKQ 312062497 ENCODE Processing Pipeline ebe371b81ea0ee2ad07366102b640fba https://www.encodeproject.org/files/ENCFF257WVD/@@download/ENCFF257WVD.bigWig mm10-minimal archived low read length, low read depth ENCFF397VVW bigWig fold change over control ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF033BGX, ENCFF065BET, ENCFF972ZKQ 301192610 ENCODE Processing Pipeline 04be08117377b45495af981248a0210d https://www.encodeproject.org/files/ENCFF397VVW/@@download/ENCFF397VVW.bigWig mm10-minimal archived low read length, low read depth ENCFF592NUZ bigWig fold change over control ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF033BGX, ENCFF065BET, ENCFF294AYB, ENCFF972ZKQ 500967115 ENCODE Processing Pipeline 7856429e16bf416a55e876545ad6a171 https://www.encodeproject.org/files/ENCFF592NUZ/@@download/ENCFF592NUZ.bigWig mm10-minimal archived low read length, low read depth ENCFF057MKY bed narrowPeak replicated peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF026JON, ENCFF939RMX, ENCFF948JAA 584929 ENCODE Processing Pipeline 93a4639c4e19fdc9830db2ff141a60e9 https://www.encodeproject.org/files/ENCFF057MKY/@@download/ENCFF057MKY.bed.gz mm10-minimal archived low read length, low read depth ENCFF861ZTY bigBed narrowPeak replicated peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF057MKY 1462984 ENCODE Processing Pipeline 7679f085b355ce597db7acdf34414a52 https://www.encodeproject.org/files/ENCFF861ZTY/@@download/ENCFF861ZTY.bigBed mm10-minimal archived low read length, low read depth ENCFF623VTB bam unfiltered alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUN, ENCFF018NEO 1038320552 ENCODE Processing Pipeline d1effc8ef9ed1e5d0c3b5a5c7f949d04 https://www.encodeproject.org/files/ENCFF623VTB/@@download/ENCFF623VTB.bam mm10 released low read length, low read depth ENCFF147JDM bam unfiltered alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUP, ENCFF018NEO 1092363568 ENCODE Processing Pipeline 109db310d70f2e1f970f37f2e0a54baf https://www.encodeproject.org/files/ENCFF147JDM/@@download/ENCFF147JDM.bam mm10 released low read length, low read depth ENCFF253JKS bam alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUN, ENCFF018NEO 683886905 ENCODE Processing Pipeline 47a4b30bf1290e68b84f87d05ae28e07 https://www.encodeproject.org/files/ENCFF253JKS/@@download/ENCFF253JKS.bam mm10 released low read length, low read depth ENCFF133FNA bam alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUP, ENCFF018NEO 728616803 ENCODE Processing Pipeline 42fffb90dcf9657f90d9201f7878d92d https://www.encodeproject.org/files/ENCFF133FNA/@@download/ENCFF133FNA.bam mm10 released low read length, low read depth ENCFF296YJC bed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF253JKS, ENCFF437LOC, ENCFF468BIZ 507927 ENCODE Processing Pipeline 71beefa96661a612eaf85a657d562061 https://www.encodeproject.org/files/ENCFF296YJC/@@download/ENCFF296YJC.bed.gz mm10 released low read length, low read depth ENCFF376CXZ bigBed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF296YJC 1680056 ENCODE Processing Pipeline e0c6304da2d68ea9af10e76c87eb755a https://www.encodeproject.org/files/ENCFF376CXZ/@@download/ENCFF376CXZ.bigBed mm10 released low read length, low read depth ENCFF193QFH bed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF133FNA, ENCFF437LOC, ENCFF468BIZ 487352 ENCODE Processing Pipeline a6caee0b7b84d17edd45c1508bbf5945 https://www.encodeproject.org/files/ENCFF193QFH/@@download/ENCFF193QFH.bed.gz mm10 released low read length, low read depth ENCFF288YNI bed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133FNA, ENCFF253JKS, ENCFF437LOC, ENCFF468BIZ 464371 ENCODE Processing Pipeline 05f3899e2d6d7603a57a3670ec1b2857 https://www.encodeproject.org/files/ENCFF288YNI/@@download/ENCFF288YNI.bed.gz mm10 released low read length, low read depth ENCFF944GSY bigBed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF193QFH 1634937 ENCODE Processing Pipeline 2f0279c66db1547fbd2752ec83170108 https://www.encodeproject.org/files/ENCFF944GSY/@@download/ENCFF944GSY.bigBed mm10 released low read length, low read depth ENCFF210XOZ bigBed narrowPeak peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF288YNI 1562823 ENCODE Processing Pipeline 4ef0778e43551c478061061ea4164873 https://www.encodeproject.org/files/ENCFF210XOZ/@@download/ENCFF210XOZ.bigBed mm10 released low read length, low read depth ENCFF007PXI bigWig signal p-value ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF253JKS, ENCFF437LOC, ENCFF468BIZ 348651755 ENCODE Processing Pipeline 1158c877012e331a2995e439503a2e75 https://www.encodeproject.org/files/ENCFF007PXI/@@download/ENCFF007PXI.bigWig mm10 released low read length, low read depth ENCFF014JPH bigWig signal p-value ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF133FNA, ENCFF437LOC, ENCFF468BIZ 353934782 ENCODE Processing Pipeline 651fd425daa38cb64e95a93dfbe9ac01 https://www.encodeproject.org/files/ENCFF014JPH/@@download/ENCFF014JPH.bigWig mm10 released low read length, low read depth ENCFF510YZD bigWig signal p-value ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133FNA, ENCFF253JKS, ENCFF437LOC, ENCFF468BIZ 446843221 ENCODE Processing Pipeline 5321f7b9ab1288caeb60e1270f488ef0 https://www.encodeproject.org/files/ENCFF510YZD/@@download/ENCFF510YZD.bigWig mm10 released low read length, low read depth ENCFF660EHZ bigWig fold change over control ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF253JKS, ENCFF437LOC, ENCFF468BIZ 314849573 ENCODE Processing Pipeline a712e7750854e107f9a8f1d4532892a0 https://www.encodeproject.org/files/ENCFF660EHZ/@@download/ENCFF660EHZ.bigWig mm10 released low read length, low read depth ENCFF660CCX bigWig fold change over control ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF133FNA, ENCFF437LOC, ENCFF468BIZ 304323938 ENCODE Processing Pipeline aad3052f99fd047b505b4789c221e90d https://www.encodeproject.org/files/ENCFF660CCX/@@download/ENCFF660CCX.bigWig mm10 released low read length, low read depth ENCFF081AUZ bigWig fold change over control ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF133FNA, ENCFF253JKS, ENCFF437LOC, ENCFF468BIZ 499700361 ENCODE Processing Pipeline 126a56049aa3d559490dfa54557c3403 https://www.encodeproject.org/files/ENCFF081AUZ/@@download/ENCFF081AUZ.bigWig mm10 released low read length, low read depth ENCFF651IYR bed narrowPeak replicated peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF193QFH, ENCFF288YNI, ENCFF296YJC 578235 ENCODE Processing Pipeline 6d47910e9133cc45260785818c3866b0 https://www.encodeproject.org/files/ENCFF651IYR/@@download/ENCFF651IYR.bed.gz mm10 released low read length, low read depth ENCFF922IWM bigBed narrowPeak replicated peaks ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF651IYR 1450620 ENCODE Processing Pipeline d4199a5faaaf57f4d23b35979c99ca2c https://www.encodeproject.org/files/ENCFF922IWM/@@download/ENCFF922IWM.bigBed mm10 released low read length, low read depth ENCFF435VYL fastq reads ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 567589765 Michael Snyder, Stanford 459f6fe1b1819385f3e87febc337e42e https://www.encodeproject.org/files/ENCFF435VYL/@@download/ENCFF435VYL.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF706XAJ bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF274DXL 705051255 Michael Snyder, Stanford 39fb52be3f5af79593f8541a3b4d4a5d https://www.encodeproject.org/files/ENCFF706XAJ/@@download/ENCFF706XAJ.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF883ROD bed narrowPeak peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF343FQU, ENCFF706XAJ 303973 Michael Snyder, Stanford bf2332cce2ff315c93421cd344cefd10 https://www.encodeproject.org/files/ENCFF883ROD/@@download/ENCFF883ROD.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF274DXL fastq reads ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 998637992 Michael Snyder, Stanford 634f9df0dd9a88c1de1725eab096b5fa https://www.encodeproject.org/files/ENCFF274DXL/@@download/ENCFF274DXL.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF343FQU bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF435VYL 429395036 Michael Snyder, Stanford 0fc9e9fd17904d01e6838cb1f6c1d29d https://www.encodeproject.org/files/ENCFF343FQU/@@download/ENCFF343FQU.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF174KDI bigBed narrowPeak peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF883ROD 691326 ENCODE Consortium 94e8fd45fabd06bc06e32779e2f2f63f https://www.encodeproject.org/files/ENCFF174KDI/@@download/ENCFF174KDI.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF138PFZ bam unfiltered alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF435VYL 666200185 ENCODE Processing Pipeline db37d84d1367409c5bf373ebda0cfa92 https://www.encodeproject.org/files/ENCFF138PFZ/@@download/ENCFF138PFZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF641TEA bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF435VYL 384212350 ENCODE Processing Pipeline cc4c7fa4e0ab0ece9d833083d3835877 https://www.encodeproject.org/files/ENCFF641TEA/@@download/ENCFF641TEA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF616KKM bam unfiltered alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF274DXL 1134301969 ENCODE Processing Pipeline 78c451176f3273ac70d0613527af34c3 https://www.encodeproject.org/files/ENCFF616KKM/@@download/ENCFF616KKM.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF385EDC bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF274DXL 588484753 ENCODE Processing Pipeline 389c52de4f3cdcb6b415c0cc22b6b528 https://www.encodeproject.org/files/ENCFF385EDC/@@download/ENCFF385EDC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF492KMW bigWig signal p-value ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF074LDJ, ENCFF641TEA, ENCFF966YUS 373880924 ENCODE Processing Pipeline daa9cc177ed16a90f6aeaca105fce7f9 https://www.encodeproject.org/files/ENCFF492KMW/@@download/ENCFF492KMW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF839GFU bigWig signal p-value ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF385EDC, ENCFF966YUS 433830687 ENCODE Processing Pipeline f9797335e3e100897c9347b4163bcedf https://www.encodeproject.org/files/ENCFF839GFU/@@download/ENCFF839GFU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF106UST bigWig signal p-value ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF074LDJ, ENCFF385EDC, ENCFF641TEA, ENCFF966YUS 482788937 ENCODE Processing Pipeline 0b30029ca2ccde8cb26da422bcdba36a https://www.encodeproject.org/files/ENCFF106UST/@@download/ENCFF106UST.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF366FIM bigWig fold change over control ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF074LDJ, ENCFF641TEA, ENCFF966YUS 232147454 ENCODE Processing Pipeline 6920971300fe2109df72a4791a7abe48 https://www.encodeproject.org/files/ENCFF366FIM/@@download/ENCFF366FIM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF419GDO bigWig fold change over control ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF385EDC, ENCFF966YUS 297255828 ENCODE Processing Pipeline c070f6b9bc8196b82bd944fc7e3eca34 https://www.encodeproject.org/files/ENCFF419GDO/@@download/ENCFF419GDO.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF738IHC bigWig fold change over control ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF074LDJ, ENCFF385EDC, ENCFF641TEA, ENCFF966YUS 466211196 ENCODE Processing Pipeline 8999d0c1135c472421e482b34935cf87 https://www.encodeproject.org/files/ENCFF738IHC/@@download/ENCFF738IHC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF254FAR bed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF074LDJ, ENCFF641TEA, ENCFF966YUS 4151737 ENCODE Processing Pipeline 2b9c8907081360ba85e0cd40ad4114e9 https://www.encodeproject.org/files/ENCFF254FAR/@@download/ENCFF254FAR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF331PWC bed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF074LDJ, ENCFF385EDC, ENCFF641TEA, ENCFF966YUS 5372758 ENCODE Processing Pipeline acbffc25cc49548fe4ae2b6807d926e7 https://www.encodeproject.org/files/ENCFF331PWC/@@download/ENCFF331PWC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF111KNX bed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF385EDC, ENCFF966YUS 4739103 ENCODE Processing Pipeline 011082173a92dd666ad3de63ccc36ea7 https://www.encodeproject.org/files/ENCFF111KNX/@@download/ENCFF111KNX.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF796HVF bigBed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 ENCFF254FAR 9604872 ENCODE Processing Pipeline 376455a78611d1b220d217f73f055e6d https://www.encodeproject.org/files/ENCFF796HVF/@@download/ENCFF796HVF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF288WPL bigBed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 ENCFF111KNX 10933725 ENCODE Processing Pipeline 1d52a37a9d2d3bfaf62a6e4a83c926bb https://www.encodeproject.org/files/ENCFF288WPL/@@download/ENCFF288WPL.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF480PIP bigBed narrowPeak peaks and background as input for IDR ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF331PWC 11324331 ENCODE Processing Pipeline 3f8e63b42039fac5cf45e3fb789e7cfc https://www.encodeproject.org/files/ENCFF480PIP/@@download/ENCFF480PIP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF535CTU bed narrowPeak conservative idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF111KNX, ENCFF254FAR, ENCFF331PWC, ENCFF547MET 288084 ENCODE Processing Pipeline afbb965427503fe7e18556478c22792d https://www.encodeproject.org/files/ENCFF535CTU/@@download/ENCFF535CTU.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF599GJE bed narrowPeak optimal idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF111KNX, ENCFF254FAR, ENCFF331PWC, ENCFF547MET 300989 ENCODE Processing Pipeline 475b6cd9a23895688adf1c714694bf7b https://www.encodeproject.org/files/ENCFF599GJE/@@download/ENCFF599GJE.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF968SPT bigBed narrowPeak conservative idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF535CTU 590586 ENCODE Processing Pipeline bb6d419a057793de18c01540f6228da9 https://www.encodeproject.org/files/ENCFF968SPT/@@download/ENCFF968SPT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF083BQU bigBed narrowPeak optimal idr thresholded peaks ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF599GJE 610102 ENCODE Processing Pipeline 301a5384f65f106d62887dda05a366de https://www.encodeproject.org/files/ENCFF083BQU/@@download/ENCFF083BQU.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF001MQA bigBed broadPeak peaks ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFL 271019 Ross Hardison, PennState ca90c0194bbdacf5e638d5acc50a5526 https://www.encodeproject.org/files/ENCFF001MQA/@@download/ENCFF001MQA.bigBed mm9 released ENCFF001MQB bigWig signal ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4958631967 Ross Hardison, PennState c00d22cde05c59b1332760379c5adf12 https://www.encodeproject.org/files/ENCFF001MQB/@@download/ENCFF001MQB.bigWig mm9 released missing derived_from ENCFF001MQC bam alignments ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQL 3600124204 Ross Hardison, PennState 3150852f9338a761e5d0daa662b9c509 https://www.encodeproject.org/files/ENCFF001MQC/@@download/ENCFF001MQC.bam mm9 released ENCFF001MQL fastq reads ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 55 single-ended 3106530238 Ross Hardison, PennState a250a47f04846259c8aaf75d3678cf3f https://www.encodeproject.org/files/ENCFF001MQL/@@download/ENCFF001MQL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MRC/ released inconsistent control read length ENCFF001YFL bed broadPeak peaks ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 124805 Ross Hardison, PennState caff88d304aaad703cdb5ce329a5b688 https://www.encodeproject.org/files/ENCFF001YFL/@@download/ENCFF001YFL.bed.gz mm9 released missing derived_from ENCFF793QXG bam unfiltered alignments ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQL, ENCFF018NEO 3398438320 ENCODE Processing Pipeline b8186b5279fbbbf7955bb1bbc46b40f2 https://www.encodeproject.org/files/ENCFF793QXG/@@download/ENCFF793QXG.bam mm10 released ENCFF944TDI bam alignments ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQL, ENCFF018NEO 2370441366 ENCODE Processing Pipeline 540cb4fdfed5ba39358fb18ad7f4e484 https://www.encodeproject.org/files/ENCFF944TDI/@@download/ENCFF944TDI.bam mm10 released ENCFF002WXS fastq reads ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1605787968 Bing Ren, UCSD 570e6bf04a829155e641eaaaad4383a0 SRA:SRR3652413 https://www.encodeproject.org/files/ENCFF002WXS/@@download/ENCFF002WXS.fastq.gz Illumina HiSeq 2500 /files/ENCFF765QAR/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF113UTS fastq reads ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1325977238 Bing Ren, UCSD 2fb4d362cb31d95c74bcf074ca6aad75 SRA:SRR3652416 https://www.encodeproject.org/files/ENCFF113UTS/@@download/ENCFF113UTS.fastq.gz Illumina HiSeq 2500 /files/ENCFF647PIC/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF221DGD fastq reads ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2664562288 Bing Ren, UCSD e105ba7a94180037c846738af2a1081d SRA:SRR3652414 https://www.encodeproject.org/files/ENCFF221DGD/@@download/ENCFF221DGD.fastq.gz Illumina HiSeq 2000 /files/ENCFF765QAR/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF972CBX fastq reads ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 3 50 single-ended 225776369 Bing Ren, UCSD 184162660d55616cb5c5ed533b4d440a SRA:SRR3652415 https://www.encodeproject.org/files/ENCFF972CBX/@@download/ENCFF972CBX.fastq.gz Illumina HiSeq 2500 /files/ENCFF765QAR/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF357LNF fastq reads ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2977100061 Bing Ren, UCSD 11b801cda7d93c5b7a09db457ff4b51e SRA:SRR3652417 https://www.encodeproject.org/files/ENCFF357LNF/@@download/ENCFF357LNF.fastq.gz Illumina HiSeq 2000 /files/ENCFF647PIC/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF807XSN bam alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF002WXS, ENCFF221DGD, ENCFF806TVZ, ENCFF972CBX 2974950362 ENCODE Processing Pipeline 623b16ca4eba77e481a717ca29adb9ff https://www.encodeproject.org/files/ENCFF807XSN/@@download/ENCFF807XSN.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF891EEC bam alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF113UTS, ENCFF357LNF, ENCFF806TVZ 3127745003 ENCODE Processing Pipeline 70311963f24089c106db6885c77f9c2d https://www.encodeproject.org/files/ENCFF891EEC/@@download/ENCFF891EEC.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF067JTA bed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF807XSN 2697618 ENCODE Processing Pipeline 39778ada2e2d3701fb74bd226ee18bc7 https://www.encodeproject.org/files/ENCFF067JTA/@@download/ENCFF067JTA.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF902TYG bed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF891EEC 2045833 ENCODE Processing Pipeline 4efc4cc7fab9fb53f8e178c21c25c9d2 https://www.encodeproject.org/files/ENCFF902TYG/@@download/ENCFF902TYG.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF912DTH bed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF807XSN, ENCFF891EEC 2365548 ENCODE Processing Pipeline d167d5ada4607a2f9890662aae4bcc5c https://www.encodeproject.org/files/ENCFF912DTH/@@download/ENCFF912DTH.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF800WRZ bigBed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF067JTA 6097046 ENCODE Processing Pipeline 2df437d6b12be4c0a1792cd3249ae509 https://www.encodeproject.org/files/ENCFF800WRZ/@@download/ENCFF800WRZ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF282EIN bigBed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF902TYG 4904750 ENCODE Processing Pipeline 7eb4011fa480594ab54b75d13471e090 https://www.encodeproject.org/files/ENCFF282EIN/@@download/ENCFF282EIN.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF654AAG bigBed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF912DTH 5339569 ENCODE Processing Pipeline 33dfaf9c42f9235809379d68c895116e https://www.encodeproject.org/files/ENCFF654AAG/@@download/ENCFF654AAG.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF941VGY bigWig signal p-value ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF807XSN 1056227416 ENCODE Processing Pipeline c8b0598f1674ef8c609a31ebb3b1056b https://www.encodeproject.org/files/ENCFF941VGY/@@download/ENCFF941VGY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF176VGN bigWig signal p-value ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF891EEC 1095993669 ENCODE Processing Pipeline 82d41cff693814a76afd67a90dc8aa29 https://www.encodeproject.org/files/ENCFF176VGN/@@download/ENCFF176VGN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF310GWC bigWig signal p-value ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF807XSN, ENCFF891EEC 1405746370 ENCODE Processing Pipeline b082ed016af5a4f5b2b66230b10c803b https://www.encodeproject.org/files/ENCFF310GWC/@@download/ENCFF310GWC.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF335BOS bigWig fold change over control ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF037XLR, ENCFF241ENQ, ENCFF807XSN 1157858880 ENCODE Processing Pipeline 0aa2cee35193fbfffaebe0fd71fda606 https://www.encodeproject.org/files/ENCFF335BOS/@@download/ENCFF335BOS.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF925BNE bigWig fold change over control ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XLR, ENCFF241ENQ, ENCFF891EEC 1175966594 ENCODE Processing Pipeline ae938ed84b64b8334e1d69e12541b4cd https://www.encodeproject.org/files/ENCFF925BNE/@@download/ENCFF925BNE.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF361NQL bigWig fold change over control ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XLR, ENCFF241ENQ, ENCFF807XSN, ENCFF891EEC 1659189914 ENCODE Processing Pipeline a06975757654b3a55efe24a5c3d41c6d https://www.encodeproject.org/files/ENCFF361NQL/@@download/ENCFF361NQL.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF465KOJ bigBed narrowPeak replicated peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF526CNU 3991499 ENCODE Processing Pipeline ee55e6391cac5756a575f939da8b5d24 https://www.encodeproject.org/files/ENCFF465KOJ/@@download/ENCFF465KOJ.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF526CNU bed narrowPeak replicated peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF067JTA, ENCFF902TYG, ENCFF912DTH 2248686 ENCODE Processing Pipeline 50229b0d3ec3384a919c4056b304fc1c https://www.encodeproject.org/files/ENCFF526CNU/@@download/ENCFF526CNU.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF965MLU bam unfiltered alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF113UTS, ENCFF357LNF 5120199849 ENCODE Processing Pipeline b44245fac42695b449f3962cb3b0368e https://www.encodeproject.org/files/ENCFF965MLU/@@download/ENCFF965MLU.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF679GKD bam unfiltered alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF002WXS, ENCFF018NEO, ENCFF221DGD, ENCFF972CBX 5285092419 ENCODE Processing Pipeline a548d97e068256a4687692408e5e32c1 https://www.encodeproject.org/files/ENCFF679GKD/@@download/ENCFF679GKD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF169ABU bam alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF002WXS, ENCFF018NEO, ENCFF221DGD, ENCFF972CBX 2974352724 ENCODE Processing Pipeline 603d0f8e9e614f0e80881562d1e9fcd4 https://www.encodeproject.org/files/ENCFF169ABU/@@download/ENCFF169ABU.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF087ITV bam alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF113UTS, ENCFF357LNF 3127105258 ENCODE Processing Pipeline d7edf05838a478660e5bb758684ae7bc https://www.encodeproject.org/files/ENCFF087ITV/@@download/ENCFF087ITV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF903WJO bed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF169ABU, ENCFF487AIV, ENCFF642FOT 2687827 ENCODE Processing Pipeline 78058bc9e1b87cf384944b91d989f338 https://www.encodeproject.org/files/ENCFF903WJO/@@download/ENCFF903WJO.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF272CTL bed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087ITV, ENCFF642FOT 1796466 ENCODE Processing Pipeline 5346db0f792a4f2b7a7d1f3d694cc8e4 https://www.encodeproject.org/files/ENCFF272CTL/@@download/ENCFF272CTL.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF879WQD bed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087ITV, ENCFF169ABU, ENCFF487AIV, ENCFF642FOT 2440063 ENCODE Processing Pipeline 9a6f08d29405bc8d828719ca1905623f https://www.encodeproject.org/files/ENCFF879WQD/@@download/ENCFF879WQD.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF173YTJ bigBed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF903WJO 6102223 ENCODE Processing Pipeline 17fb6fb356a34c46058a19e3ae97ef3c https://www.encodeproject.org/files/ENCFF173YTJ/@@download/ENCFF173YTJ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF325LLJ bigBed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF272CTL 4342982 ENCODE Processing Pipeline 79d9f283cb334523bb166f4d27ba9ee4 https://www.encodeproject.org/files/ENCFF325LLJ/@@download/ENCFF325LLJ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF607WQI bigBed narrowPeak peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF879WQD 5530477 ENCODE Processing Pipeline e3715c6e2ba84776ad8f05d3eb86a0da https://www.encodeproject.org/files/ENCFF607WQI/@@download/ENCFF607WQI.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF271HTJ bigWig signal p-value ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF169ABU, ENCFF487AIV, ENCFF642FOT 1056462560 ENCODE Processing Pipeline bd10256368dd4bc359e81b6753c8500d https://www.encodeproject.org/files/ENCFF271HTJ/@@download/ENCFF271HTJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF693IYH bigWig signal p-value ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087ITV, ENCFF642FOT 908995230 ENCODE Processing Pipeline 826bc873d9c6392e04ee962f96d5add7 https://www.encodeproject.org/files/ENCFF693IYH/@@download/ENCFF693IYH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF644WNM bigWig signal p-value ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087ITV, ENCFF169ABU, ENCFF487AIV, ENCFF642FOT 1608590213 ENCODE Processing Pipeline 91527ba24e8181794bdaedada6df942f https://www.encodeproject.org/files/ENCFF644WNM/@@download/ENCFF644WNM.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF655CRJ bigWig fold change over control ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF169ABU, ENCFF487AIV, ENCFF642FOT 1240876071 ENCODE Processing Pipeline 4723705716c65412ea582df2a684a078 https://www.encodeproject.org/files/ENCFF655CRJ/@@download/ENCFF655CRJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF353TTJ bigWig fold change over control ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087ITV, ENCFF642FOT 970079071 ENCODE Processing Pipeline 17ab7b6bab3bdbf4ebdba80c7c2443f9 https://www.encodeproject.org/files/ENCFF353TTJ/@@download/ENCFF353TTJ.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF309BMY bigWig fold change over control ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087ITV, ENCFF169ABU, ENCFF487AIV, ENCFF642FOT 1735684090 ENCODE Processing Pipeline 4472bc61c722b1e1810e86001fd297fe https://www.encodeproject.org/files/ENCFF309BMY/@@download/ENCFF309BMY.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF057YDK bed narrowPeak replicated peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF272CTL, ENCFF879WQD, ENCFF903WJO 2012697 ENCODE Processing Pipeline 5807fae9f1c7aea296b2c3420771f434 https://www.encodeproject.org/files/ENCFF057YDK/@@download/ENCFF057YDK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF207RNF bigBed narrowPeak replicated peaks ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF057YDK 3559161 ENCODE Processing Pipeline 8df66afb167485af7d51afc8ce308988 https://www.encodeproject.org/files/ENCFF207RNF/@@download/ENCFF207RNF.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF765GAE bam alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF192AME, ENCFF806TVZ 3044617670 ENCODE Processing Pipeline a12037c2094334edba28a9fb2b2ab08a https://www.encodeproject.org/files/ENCFF765GAE/@@download/ENCFF765GAE.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF192AME fastq reads ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3552054252 Bing Ren, UCSD 9675ef41e0d15be3c4f5f7f4e006321b SRA:SRR3652476 https://www.encodeproject.org/files/ENCFF192AME/@@download/ENCFF192AME.fastq.gz Illumina HiSeq 2000 /files/ENCFF324AEZ/ released mild to moderate bottlenecking, inconsistent platforms ENCFF664BYP fastq reads ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3649738635 Bing Ren, UCSD 71dc84f9b6ab83bb309fc71623d036a5 SRA:SRR3652475 https://www.encodeproject.org/files/ENCFF664BYP/@@download/ENCFF664BYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF637RQH/ released mild to moderate bottlenecking, inconsistent platforms ENCFF157WLI bam alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF664BYP, ENCFF806TVZ 2960409048 ENCODE Processing Pipeline fb63babad7d05fc0885752b190900025 https://www.encodeproject.org/files/ENCFF157WLI/@@download/ENCFF157WLI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF150QCV bed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF157WLI 1475295 ENCODE Processing Pipeline ce65d51f377d15297ed535f52c76b98f https://www.encodeproject.org/files/ENCFF150QCV/@@download/ENCFF150QCV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF002FDC bigBed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF446KHU 3526251 ENCODE Processing Pipeline 905ec1739f3d31307af1ffb68d1416bf https://www.encodeproject.org/files/ENCFF002FDC/@@download/ENCFF002FDC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF446KHU bed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF765GAE 1791317 ENCODE Processing Pipeline e7e6c757afe53fd139fa9f4e4a70a376 https://www.encodeproject.org/files/ENCFF446KHU/@@download/ENCFF446KHU.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF330BEW bigBed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF150QCV 2874741 ENCODE Processing Pipeline 75bc10f91865cc274e6de920f4b8795e https://www.encodeproject.org/files/ENCFF330BEW/@@download/ENCFF330BEW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF591XIV bed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF157WLI, ENCFF765GAE 1420562 ENCODE Processing Pipeline f020c88c59f8f2db647e966a793ad5c4 https://www.encodeproject.org/files/ENCFF591XIV/@@download/ENCFF591XIV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF894UPJ bigBed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF591XIV 3435597 ENCODE Processing Pipeline bfccc8004dc0d3b4557912d31bfcb054 https://www.encodeproject.org/files/ENCFF894UPJ/@@download/ENCFF894UPJ.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF155PMN bigWig signal p-value ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF765GAE 1023719058 ENCODE Processing Pipeline 6b92e7f0c32872f51d83d35c62eb2ccf https://www.encodeproject.org/files/ENCFF155PMN/@@download/ENCFF155PMN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF475RGG bigWig signal p-value ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF157WLI 693647615 ENCODE Processing Pipeline 21aaae2686e23618de8c280295545f25 https://www.encodeproject.org/files/ENCFF475RGG/@@download/ENCFF475RGG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF494NQX bigWig signal p-value ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF157WLI, ENCFF765GAE 1135557334 ENCODE Processing Pipeline 0d881ce9c43c209d2085eb82ad7e59ef https://www.encodeproject.org/files/ENCFF494NQX/@@download/ENCFF494NQX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF541QJL bigWig fold change over control ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF157WLI 982260066 ENCODE Processing Pipeline d9224bd4e69f2ac9dd27609e239d86c3 https://www.encodeproject.org/files/ENCFF541QJL/@@download/ENCFF541QJL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF865FSA bigWig fold change over control ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF157WLI, ENCFF765GAE 1522406179 ENCODE Processing Pipeline 5de5c56c398ac46d8d92b01e33b63f2c https://www.encodeproject.org/files/ENCFF865FSA/@@download/ENCFF865FSA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF621LTK bigWig fold change over control ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF765GAE 1037916154 ENCODE Processing Pipeline 90c48995d9af8e7d65cabad10a65afb6 https://www.encodeproject.org/files/ENCFF621LTK/@@download/ENCFF621LTK.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF324CTI bed narrowPeak replicated peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF150QCV, ENCFF446KHU, ENCFF591XIV 1106128 ENCODE Processing Pipeline 3000c669b3f51551e4c6808ee8a1a668 https://www.encodeproject.org/files/ENCFF324CTI/@@download/ENCFF324CTI.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF542EJW bigBed narrowPeak replicated peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF324CTI 2296950 ENCODE Processing Pipeline 150b9281a1b6e2eade158c6ff11474cd https://www.encodeproject.org/files/ENCFF542EJW/@@download/ENCFF542EJW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF930REP bam unfiltered alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF664BYP 4292346314 ENCODE Processing Pipeline 13fd5f7c190648316bd998229239abbb https://www.encodeproject.org/files/ENCFF930REP/@@download/ENCFF930REP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF286IZF bam unfiltered alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF192AME 4211967023 ENCODE Processing Pipeline 1db99ccf24c7cc6a4b5238635fff298d https://www.encodeproject.org/files/ENCFF286IZF/@@download/ENCFF286IZF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF677ASA bam alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF192AME 3044082551 ENCODE Processing Pipeline e37fab182357f2f0a0fed53ee207765f https://www.encodeproject.org/files/ENCFF677ASA/@@download/ENCFF677ASA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF668ZKU bam alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF664BYP 2959943279 ENCODE Processing Pipeline 889596b15ece179875af951b1272e6ae https://www.encodeproject.org/files/ENCFF668ZKU/@@download/ENCFF668ZKU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF334JNJ bed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF668ZKU, ENCFF814RAT, ENCFF904KQI 1706889 ENCODE Processing Pipeline d35961e9854f89908104509fd8231775 https://www.encodeproject.org/files/ENCFF334JNJ/@@download/ENCFF334JNJ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF117KMI bed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF677ASA, ENCFF814RAT 1422859 ENCODE Processing Pipeline fdf3fa1c922b1f25be1549b212be6831 https://www.encodeproject.org/files/ENCFF117KMI/@@download/ENCFF117KMI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF578AIU bed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF668ZKU, ENCFF677ASA, ENCFF814RAT, ENCFF904KQI 2060823 ENCODE Processing Pipeline 8896effa68c5d1a89a089b6201891ae0 https://www.encodeproject.org/files/ENCFF578AIU/@@download/ENCFF578AIU.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF103JLT bigBed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF334JNJ 3318088 ENCODE Processing Pipeline 03a4dafa7dcfb42d124e33fa5d5dd15b https://www.encodeproject.org/files/ENCFF103JLT/@@download/ENCFF103JLT.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF943NTI bigBed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF117KMI 2813180 ENCODE Processing Pipeline a4735f1ce9cefabe2843a513cec3dd32 https://www.encodeproject.org/files/ENCFF943NTI/@@download/ENCFF943NTI.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF582FFZ bigBed narrowPeak peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF578AIU 5055190 ENCODE Processing Pipeline 0708be8671fa223bdd14207088159604 https://www.encodeproject.org/files/ENCFF582FFZ/@@download/ENCFF582FFZ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF705WNO bigWig signal p-value ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF668ZKU, ENCFF814RAT, ENCFF904KQI 1000249250 ENCODE Processing Pipeline fa55fc78b76017602dffa3942f414f03 https://www.encodeproject.org/files/ENCFF705WNO/@@download/ENCFF705WNO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF360QBS bigWig signal p-value ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF677ASA, ENCFF814RAT 930348414 ENCODE Processing Pipeline 6f566b98dcfd7e24e667b50b9a616b62 https://www.encodeproject.org/files/ENCFF360QBS/@@download/ENCFF360QBS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF071NAX bigWig signal p-value ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF668ZKU, ENCFF677ASA, ENCFF814RAT, ENCFF904KQI 1675329525 ENCODE Processing Pipeline 1dd4f4330dc55ea15dae7a6f524c300e https://www.encodeproject.org/files/ENCFF071NAX/@@download/ENCFF071NAX.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF216RGN bigWig fold change over control ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF668ZKU, ENCFF814RAT, ENCFF904KQI 1143036403 ENCODE Processing Pipeline e2243b26d09bdbed14dea9d63d3e952b https://www.encodeproject.org/files/ENCFF216RGN/@@download/ENCFF216RGN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF893MTA bigWig fold change over control ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF677ASA, ENCFF814RAT 935489978 ENCODE Processing Pipeline b5e4d28940c52482918be4965b5a4161 https://www.encodeproject.org/files/ENCFF893MTA/@@download/ENCFF893MTA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF009QET bigWig fold change over control ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF668ZKU, ENCFF677ASA, ENCFF814RAT, ENCFF904KQI 1689248150 ENCODE Processing Pipeline 6cc02597338fb3781d95071cfee7cfef https://www.encodeproject.org/files/ENCFF009QET/@@download/ENCFF009QET.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF053PYZ bed narrowPeak replicated peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF117KMI, ENCFF334JNJ, ENCFF578AIU 1053516 ENCODE Processing Pipeline 1109f7dd2aa9e3419956a62ffa00e5d1 https://www.encodeproject.org/files/ENCFF053PYZ/@@download/ENCFF053PYZ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF589ZPE bigBed narrowPeak replicated peaks ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF053PYZ 2153583 ENCODE Processing Pipeline 02447af7e85aec462ab9e17c40da6f75 https://www.encodeproject.org/files/ENCFF589ZPE/@@download/ENCFF589ZPE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF002AMV fastq reads ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1054754214 Bing Ren, UCSD fefcd794f0408452656107e6a5b568c2 SRA:SRR3651565 https://www.encodeproject.org/files/ENCFF002AMV/@@download/ENCFF002AMV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQM/ released low read length, low read depth ENCFF002AMY fastq reads ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1276890609 Bing Ren, UCSD 335ed41e323856058a69005eedaf3450 SRA:SRR3651566 https://www.encodeproject.org/files/ENCFF002AMY/@@download/ENCFF002AMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, low read depth ENCFF116ZPD bam alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMY, ENCFF806TVZ 823826163 ENCODE Processing Pipeline a64e1d37d1ede3a7d4e967e62d478ed8 https://www.encodeproject.org/files/ENCFF116ZPD/@@download/ENCFF116ZPD.bam mm10-minimal archived low read length, low read depth ENCFF188DQH bam alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMV, ENCFF806TVZ 679282529 ENCODE Processing Pipeline dca3e1750f2aa4c20cbd8f1de6e1146f https://www.encodeproject.org/files/ENCFF188DQH/@@download/ENCFF188DQH.bam mm10-minimal archived low read length, low read depth ENCFF251DLW bed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF188DQH, ENCFF790TLG 517637 ENCODE Processing Pipeline d5dfbb27648aa2fc4e4eda0e0c3e05e3 https://www.encodeproject.org/files/ENCFF251DLW/@@download/ENCFF251DLW.bed.gz mm10-minimal archived low read length, low read depth ENCFF175CPO bigBed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF251DLW 1696635 ENCODE Processing Pipeline 64ddfecc980532695074fd333c3e42f4 https://www.encodeproject.org/files/ENCFF175CPO/@@download/ENCFF175CPO.bigBed mm10-minimal archived low read length, low read depth ENCFF665DLX bigBed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF666HLL 1721188 ENCODE Processing Pipeline 809cc0e181712217205c9c74edc8245b https://www.encodeproject.org/files/ENCFF665DLX/@@download/ENCFF665DLX.bigBed mm10-minimal archived low read length, low read depth ENCFF334SBL bed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF116ZPD, ENCFF988JQL 490883 ENCODE Processing Pipeline ce74456405ae1ae12f3820b4ae834556 https://www.encodeproject.org/files/ENCFF334SBL/@@download/ENCFF334SBL.bed.gz mm10-minimal archived low read length, low read depth ENCFF666HLL bed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF116ZPD, ENCFF188DQH, ENCFF790TLG, ENCFF988JQL 533715 ENCODE Processing Pipeline 7b93962e935ab258cd8955392fcc8de9 https://www.encodeproject.org/files/ENCFF666HLL/@@download/ENCFF666HLL.bed.gz mm10-minimal archived low read length, low read depth ENCFF988SGE bigBed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF334SBL 1618396 ENCODE Processing Pipeline 025b270d3102d7a39fb152bdd6029109 https://www.encodeproject.org/files/ENCFF988SGE/@@download/ENCFF988SGE.bigBed mm10-minimal archived low read length, low read depth ENCFF045KQL bigWig signal p-value ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF116ZPD, ENCFF988JQL 340891593 ENCODE Processing Pipeline a629b2bd7c7ca22ed08cf85f97d2633b https://www.encodeproject.org/files/ENCFF045KQL/@@download/ENCFF045KQL.bigWig mm10-minimal archived low read length, low read depth ENCFF678GMS bigWig signal p-value ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF188DQH, ENCFF790TLG 306353474 ENCODE Processing Pipeline aba85f0721c3881ec03ca6e9432dc817 https://www.encodeproject.org/files/ENCFF678GMS/@@download/ENCFF678GMS.bigWig mm10-minimal archived low read length, low read depth ENCFF691PEW bigWig signal p-value ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF116ZPD, ENCFF188DQH, ENCFF790TLG, ENCFF988JQL 600401760 ENCODE Processing Pipeline 06b2d083151bab40fad337bc30b8b10e https://www.encodeproject.org/files/ENCFF691PEW/@@download/ENCFF691PEW.bigWig mm10-minimal archived low read length, low read depth ENCFF805DUG bigWig fold change over control ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF116ZPD, ENCFF988JQL 325458108 ENCODE Processing Pipeline 39a5bdcc78a18b57e470fa684d44daad https://www.encodeproject.org/files/ENCFF805DUG/@@download/ENCFF805DUG.bigWig mm10-minimal archived low read length, low read depth ENCFF580MQV bigWig fold change over control ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF188DQH, ENCFF790TLG 269147636 ENCODE Processing Pipeline c3de537ab6df57e528669a835ef0287a https://www.encodeproject.org/files/ENCFF580MQV/@@download/ENCFF580MQV.bigWig mm10-minimal archived low read length, low read depth ENCFF799QIR bigWig fold change over control ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF116ZPD, ENCFF188DQH, ENCFF790TLG, ENCFF988JQL 628537114 ENCODE Processing Pipeline cee000c218374f8dee1cf8c17963a92b https://www.encodeproject.org/files/ENCFF799QIR/@@download/ENCFF799QIR.bigWig mm10-minimal archived low read length, low read depth ENCFF643OPH bed narrowPeak replicated peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF251DLW, ENCFF334SBL, ENCFF666HLL 579716 ENCODE Processing Pipeline 31d3b81d6500fff3a06d63dd3a8ccee1 https://www.encodeproject.org/files/ENCFF643OPH/@@download/ENCFF643OPH.bed.gz mm10-minimal archived low read length, low read depth ENCFF951IIJ bigBed narrowPeak replicated peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF643OPH 1454931 ENCODE Processing Pipeline a76f53ee1d16705b121817eddeb25183 https://www.encodeproject.org/files/ENCFF951IIJ/@@download/ENCFF951IIJ.bigBed mm10-minimal archived low read length, low read depth ENCFF170DOZ bam unfiltered alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMV, ENCFF018NEO 1055386125 ENCODE Processing Pipeline 553ff7409330863dbf32fb1d6c88179a https://www.encodeproject.org/files/ENCFF170DOZ/@@download/ENCFF170DOZ.bam mm10 released low read length, low read depth ENCFF355CVH bam unfiltered alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMY, ENCFF018NEO 1287283636 ENCODE Processing Pipeline 75abe0723e49875bf606e0b912885844 https://www.encodeproject.org/files/ENCFF355CVH/@@download/ENCFF355CVH.bam mm10 released low read length, low read depth ENCFF189YWL bam alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMV, ENCFF018NEO 679095757 ENCODE Processing Pipeline 7f24c18661c7699ba96816e8c851bce6 https://www.encodeproject.org/files/ENCFF189YWL/@@download/ENCFF189YWL.bam mm10 released low read length, low read depth ENCFF953IAT bam alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMY, ENCFF018NEO 823601653 ENCODE Processing Pipeline c5560792215a131b094b346a092f7cdb https://www.encodeproject.org/files/ENCFF953IAT/@@download/ENCFF953IAT.bam mm10 released low read length, low read depth ENCFF653AUZ bed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF568CQH, ENCFF953IAT 491614 ENCODE Processing Pipeline 6f174aaaf828050ce65bbf518f0b6731 https://www.encodeproject.org/files/ENCFF653AUZ/@@download/ENCFF653AUZ.bed.gz mm10 released low read length, low read depth ENCFF538QAJ bed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF189YWL, ENCFF621MOH 518578 ENCODE Processing Pipeline f57dd38f399eb03f171232eccd33c312 https://www.encodeproject.org/files/ENCFF538QAJ/@@download/ENCFF538QAJ.bed.gz mm10 released low read length, low read depth ENCFF748WVJ bed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF189YWL, ENCFF568CQH, ENCFF621MOH, ENCFF953IAT 534790 ENCODE Processing Pipeline d6995ebbe9036ffc9f0edc62e14b74c5 https://www.encodeproject.org/files/ENCFF748WVJ/@@download/ENCFF748WVJ.bed.gz mm10 released low read length, low read depth ENCFF351PMB bigBed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF653AUZ 1626828 ENCODE Processing Pipeline 5ed12f4ab215494b0972648e5bcebc98 https://www.encodeproject.org/files/ENCFF351PMB/@@download/ENCFF351PMB.bigBed mm10 released low read length, low read depth ENCFF613DQW bigBed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF538QAJ 1700387 ENCODE Processing Pipeline e1639aa50d0650a9ad0b060f4bc59dc6 https://www.encodeproject.org/files/ENCFF613DQW/@@download/ENCFF613DQW.bigBed mm10 released low read length, low read depth ENCFF327EMB bigBed narrowPeak peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF748WVJ 1724426 ENCODE Processing Pipeline f4b0bc3c292c1adc97270685717363a3 https://www.encodeproject.org/files/ENCFF327EMB/@@download/ENCFF327EMB.bigBed mm10 released low read length, low read depth ENCFF068XGN bigWig signal p-value ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF568CQH, ENCFF953IAT 315523636 ENCODE Processing Pipeline e07411d1c428f425f93576a0a510e53a https://www.encodeproject.org/files/ENCFF068XGN/@@download/ENCFF068XGN.bigWig mm10 released low read length, low read depth ENCFF068DFU bigWig signal p-value ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF189YWL, ENCFF621MOH 357487378 ENCODE Processing Pipeline 9e2a0185e7e02d38f7c90b9535d67a6e https://www.encodeproject.org/files/ENCFF068DFU/@@download/ENCFF068DFU.bigWig mm10 released low read length, low read depth ENCFF955NNZ bigWig signal p-value ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF189YWL, ENCFF568CQH, ENCFF621MOH, ENCFF953IAT 535044555 ENCODE Processing Pipeline 92f05ab2890c3342da23abe37a630935 https://www.encodeproject.org/files/ENCFF955NNZ/@@download/ENCFF955NNZ.bigWig mm10 released low read length, low read depth ENCFF116GPS bigWig fold change over control ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF568CQH, ENCFF953IAT 340624126 ENCODE Processing Pipeline 1783ae3b5fa3602d2b95ac52fe7825b0 https://www.encodeproject.org/files/ENCFF116GPS/@@download/ENCFF116GPS.bigWig mm10 released low read length, low read depth ENCFF300LSQ bigWig fold change over control ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF189YWL, ENCFF621MOH 268766235 ENCODE Processing Pipeline 7196beecc1afcbf14e2feb83f6441896 https://www.encodeproject.org/files/ENCFF300LSQ/@@download/ENCFF300LSQ.bigWig mm10 released low read length, low read depth ENCFF002MTC bigWig fold change over control ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF189YWL, ENCFF568CQH, ENCFF621MOH, ENCFF953IAT 623151625 ENCODE Processing Pipeline 23fe47a5f81e7a022db5cd85d63bc449 https://www.encodeproject.org/files/ENCFF002MTC/@@download/ENCFF002MTC.bigWig mm10 released low read length, low read depth ENCFF985ZIG bed narrowPeak replicated peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF538QAJ, ENCFF653AUZ, ENCFF748WVJ 579359 ENCODE Processing Pipeline a1180dd48e90b9922a47fd6cc5897d04 https://www.encodeproject.org/files/ENCFF985ZIG/@@download/ENCFF985ZIG.bed.gz mm10 released low read length, low read depth ENCFF911CTR bigBed narrowPeak replicated peaks ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF985ZIG 1459307 ENCODE Processing Pipeline c72e4707e1e906fa91ab95ddebed6107 https://www.encodeproject.org/files/ENCFF911CTR/@@download/ENCFF911CTR.bigBed mm10 released low read length, low read depth ENCFF306NLD bam alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF037BQD, ENCFF324TUU, ENCFF806TVZ 2636880017 ENCODE Processing Pipeline e037e8c07ec47670ff83d34416cc6fae https://www.encodeproject.org/files/ENCFF306NLD/@@download/ENCFF306NLD.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF802WLW bam alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF049PUD, ENCFF100BFU, ENCFF806TVZ 2815945537 ENCODE Processing Pipeline 81b68548aa6d4018c69d9994be4c0686 https://www.encodeproject.org/files/ENCFF802WLW/@@download/ENCFF802WLW.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF324TUU fastq reads ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 2601722523 Bing Ren, UCSD 8b00cb1d66385bdce7918c799fd45e8b SRA:SRR3651409 https://www.encodeproject.org/files/ENCFF324TUU/@@download/ENCFF324TUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF637RQH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF100BFU fastq reads ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 610383574 Bing Ren, UCSD ea281efceda4cc0d0853b666168b7790 SRA:SRR3651407 https://www.encodeproject.org/files/ENCFF100BFU/@@download/ENCFF100BFU.fastq.gz Illumina HiSeq 2500 /files/ENCFF324AEZ/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF049PUD fastq reads ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 3168200423 Bing Ren, UCSD ab99e72b79410d391aceaeeb5e839115 SRA:SRR3651408 https://www.encodeproject.org/files/ENCFF049PUD/@@download/ENCFF049PUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF324AEZ/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF037BQD fastq reads ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 1088808588 Bing Ren, UCSD 0316e56bce6a4de68acee5f1ccfe9464 SRA:SRR3651410 https://www.encodeproject.org/files/ENCFF037BQD/@@download/ENCFF037BQD.fastq.gz Illumina HiSeq 2500 /files/ENCFF637RQH/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF187BBI bed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF802WLW 2865201 ENCODE Processing Pipeline 355a16edac185b07c20d620c0da07512 https://www.encodeproject.org/files/ENCFF187BBI/@@download/ENCFF187BBI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF216GLS bigBed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF187BBI 6192206 ENCODE Processing Pipeline 2477bcae9b694d58302f287dde8f37d8 https://www.encodeproject.org/files/ENCFF216GLS/@@download/ENCFF216GLS.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF145WRE bed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF306NLD 2979499 ENCODE Processing Pipeline 087f3002bf703e4a78f72da039cba5af https://www.encodeproject.org/files/ENCFF145WRE/@@download/ENCFF145WRE.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF807KRG bigBed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF145WRE 6457811 ENCODE Processing Pipeline 3c671ee6a5f5c3139b50398d4cd9cfc6 https://www.encodeproject.org/files/ENCFF807KRG/@@download/ENCFF807KRG.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF958WTC bed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF306NLD, ENCFF802WLW 2759506 ENCODE Processing Pipeline 9aa0a6977f30cb050c51f3f0d63621e5 https://www.encodeproject.org/files/ENCFF958WTC/@@download/ENCFF958WTC.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF326UAB bigBed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF958WTC 5884660 ENCODE Processing Pipeline 5f6ad0081abf9c6a34aa2d78f2ebce19 https://www.encodeproject.org/files/ENCFF326UAB/@@download/ENCFF326UAB.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF223WTW bigWig signal p-value ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF306NLD 815563084 ENCODE Processing Pipeline 6197b0ad5d7cb306125f05b35a21f7ad https://www.encodeproject.org/files/ENCFF223WTW/@@download/ENCFF223WTW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF211CFV bigWig signal p-value ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF802WLW 926404398 ENCODE Processing Pipeline f58340f633181db64af89e82bf0ee0af https://www.encodeproject.org/files/ENCFF211CFV/@@download/ENCFF211CFV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF847CJB bigWig fold change over control ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF069WCH, ENCFF101KOM, ENCFF802WLW 989458618 ENCODE Processing Pipeline 19ebb20793fdae82ff8aa18a1197a796 https://www.encodeproject.org/files/ENCFF847CJB/@@download/ENCFF847CJB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF027IWW bigWig signal p-value ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF306NLD, ENCFF802WLW 1151137761 ENCODE Processing Pipeline 164df1e3900ae39b6d45ed855f60b97b https://www.encodeproject.org/files/ENCFF027IWW/@@download/ENCFF027IWW.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF405SYY bigWig fold change over control ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF069WCH, ENCFF101KOM, ENCFF306NLD 976636794 ENCODE Processing Pipeline 22fd45131ddb16849de705f40ea85d9a https://www.encodeproject.org/files/ENCFF405SYY/@@download/ENCFF405SYY.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF119CYA bigWig fold change over control ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF306NLD, ENCFF802WLW 1483532211 ENCODE Processing Pipeline 2ebdcb4f9e802069e810af45c52749e1 https://www.encodeproject.org/files/ENCFF119CYA/@@download/ENCFF119CYA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF128KQO bigBed narrowPeak replicated peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF046VWV 4581176 ENCODE Processing Pipeline fd87a957c31844fc04efdef7bab67070 https://www.encodeproject.org/files/ENCFF128KQO/@@download/ENCFF128KQO.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF046VWV bed narrowPeak replicated peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF145WRE, ENCFF187BBI, ENCFF958WTC 2596251 ENCODE Processing Pipeline 1b955baecab424ebcafdba1f7a43593f https://www.encodeproject.org/files/ENCFF046VWV/@@download/ENCFF046VWV.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF461YNR bam unfiltered alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF049PUD, ENCFF100BFU 4483924484 ENCODE Processing Pipeline e5cd7b5d503da596d41d7d9f92218a67 https://www.encodeproject.org/files/ENCFF461YNR/@@download/ENCFF461YNR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF737EKK bam unfiltered alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF037BQD, ENCFF324TUU 4367528115 ENCODE Processing Pipeline ddb45c1c2954270607fa6a500f647494 https://www.encodeproject.org/files/ENCFF737EKK/@@download/ENCFF737EKK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF939LXA bam alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF037BQD, ENCFF324TUU 2636313191 ENCODE Processing Pipeline ff5e3da410295bcaaba9f33667baebf7 https://www.encodeproject.org/files/ENCFF939LXA/@@download/ENCFF939LXA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF133ZFX bam alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF049PUD, ENCFF100BFU 2815320883 ENCODE Processing Pipeline 4819a4263a3484d7110a820854c54360 https://www.encodeproject.org/files/ENCFF133ZFX/@@download/ENCFF133ZFX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF865VCF bed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF133ZFX, ENCFF814RAT 2840811 ENCODE Processing Pipeline e5960c3372d045769065454029263200 https://www.encodeproject.org/files/ENCFF865VCF/@@download/ENCFF865VCF.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF828JTZ bed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF904KQI, ENCFF939LXA 2728374 ENCODE Processing Pipeline 96c97eed34cdea1f8e1b475d7938cfd2 https://www.encodeproject.org/files/ENCFF828JTZ/@@download/ENCFF828JTZ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF114QEK bed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF133ZFX, ENCFF814RAT, ENCFF904KQI, ENCFF939LXA 3012770 ENCODE Processing Pipeline 7b3344b6e74a0a3c9e0354a3581c18df https://www.encodeproject.org/files/ENCFF114QEK/@@download/ENCFF114QEK.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF611MFX bigBed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF828JTZ 5882491 ENCODE Processing Pipeline dca6962a03bb6e3a66bc8da15edd5bc4 https://www.encodeproject.org/files/ENCFF611MFX/@@download/ENCFF611MFX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF331WQI bigBed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF865VCF 6195066 ENCODE Processing Pipeline c29d32540de16b99235c4ad5fbdf583c https://www.encodeproject.org/files/ENCFF331WQI/@@download/ENCFF331WQI.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF217ODD bigBed narrowPeak peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF114QEK 6503663 ENCODE Processing Pipeline 01577a2a64319b0126b77bc1734ccca7 https://www.encodeproject.org/files/ENCFF217ODD/@@download/ENCFF217ODD.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF681LZU bigWig signal p-value ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF904KQI, ENCFF939LXA 748281285 ENCODE Processing Pipeline e61bb0c066345bb5aaf5e9406fdb9804 https://www.encodeproject.org/files/ENCFF681LZU/@@download/ENCFF681LZU.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF603GQC bigWig signal p-value ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF133ZFX, ENCFF814RAT 699666606 ENCODE Processing Pipeline e218c13a37f971671d8c36164f5f07de https://www.encodeproject.org/files/ENCFF603GQC/@@download/ENCFF603GQC.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF829QGH bigWig signal p-value ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF133ZFX, ENCFF814RAT, ENCFF904KQI, ENCFF939LXA 1394151755 ENCODE Processing Pipeline 4096800eb4eb98e0d6051f268a29832d https://www.encodeproject.org/files/ENCFF829QGH/@@download/ENCFF829QGH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF239IEA bigWig fold change over control ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF904KQI, ENCFF939LXA 871839851 ENCODE Processing Pipeline d85bb119d2f7f474b22a0fcaa2c889a5 https://www.encodeproject.org/files/ENCFF239IEA/@@download/ENCFF239IEA.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF537KHD bigWig fold change over control ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF133ZFX, ENCFF814RAT 938527797 ENCODE Processing Pipeline 853ec3c997361dba6fa12e3f1f6d4a81 https://www.encodeproject.org/files/ENCFF537KHD/@@download/ENCFF537KHD.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF032KOM bigWig fold change over control ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF133ZFX, ENCFF814RAT, ENCFF904KQI, ENCFF939LXA 1589692130 ENCODE Processing Pipeline 2ad016358532d2179e88fa9f7f183b7d https://www.encodeproject.org/files/ENCFF032KOM/@@download/ENCFF032KOM.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF662QMT bed narrowPeak replicated peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF114QEK, ENCFF828JTZ, ENCFF865VCF 2307897 ENCODE Processing Pipeline ed22fcafd68129c879029d49dfba3abe https://www.encodeproject.org/files/ENCFF662QMT/@@download/ENCFF662QMT.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF456FLO bigBed narrowPeak replicated peaks ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF662QMT 3993502 ENCODE Processing Pipeline a278eb22d4c0342cfe1646ad1bdc3641 https://www.encodeproject.org/files/ENCFF456FLO/@@download/ENCFF456FLO.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF222ACN fastq reads ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2405284404 Bing Ren, UCSD 86fb77c491b117b516692127192da9ac SRA:SRR3651996 https://www.encodeproject.org/files/ENCFF222ACN/@@download/ENCFF222ACN.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released mild to moderate bottlenecking, inconsistent platforms ENCFF288PUA fastq reads ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1787316176 Bing Ren, UCSD 10b28cbd9d7c29a1009fbc0cdbf2e7d9 SRA:SRR3651997 https://www.encodeproject.org/files/ENCFF288PUA/@@download/ENCFF288PUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF128QKO bam alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF222ACN, ENCFF806TVZ 1928242321 ENCODE Processing Pipeline 5c1d2b8299c83883d2595d31ec9d721b https://www.encodeproject.org/files/ENCFF128QKO/@@download/ENCFF128QKO.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF636PQI bam alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF288PUA, ENCFF806TVZ 1504074339 ENCODE Processing Pipeline 18459569f85eb420c087d63c82c56df5 https://www.encodeproject.org/files/ENCFF636PQI/@@download/ENCFF636PQI.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF614KUI bed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF128QKO, ENCFF478WUL, ENCFF636PQI 2030041 ENCODE Processing Pipeline 25f0f4bd272bad33ab97e50fbd8908e1 https://www.encodeproject.org/files/ENCFF614KUI/@@download/ENCFF614KUI.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF143DTF bed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF128QKO, ENCFF478WUL 1748918 ENCODE Processing Pipeline f2a0777a904475dfdc3f7db69a68c90f https://www.encodeproject.org/files/ENCFF143DTF/@@download/ENCFF143DTF.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF360SCN bigBed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF143DTF 3859520 ENCODE Processing Pipeline 24e8b26bb01339c9f5a66bb2ccb0f26d https://www.encodeproject.org/files/ENCFF360SCN/@@download/ENCFF360SCN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF748DPC bigBed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF614KUI 5558563 ENCODE Processing Pipeline 350a65502aa5dce227cb862c7c3b212e https://www.encodeproject.org/files/ENCFF748DPC/@@download/ENCFF748DPC.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF516DPM bed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF636PQI 1602830 ENCODE Processing Pipeline 629ec57cdf8c25da8684df0c8232da33 https://www.encodeproject.org/files/ENCFF516DPM/@@download/ENCFF516DPM.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF673PYB bigBed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF516DPM 3599507 ENCODE Processing Pipeline 1527182ad4e224c2852b72b696de15a1 https://www.encodeproject.org/files/ENCFF673PYB/@@download/ENCFF673PYB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF024BOD bigWig signal p-value ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF128QKO, ENCFF478WUL 732146328 ENCODE Processing Pipeline 2d62a3e8980cd2d56199460dd2d290af https://www.encodeproject.org/files/ENCFF024BOD/@@download/ENCFF024BOD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF350VUN bigWig signal p-value ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF636PQI 630650466 ENCODE Processing Pipeline 86889eff611bc267e1a9ed0ff94cfb92 https://www.encodeproject.org/files/ENCFF350VUN/@@download/ENCFF350VUN.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF004NMM bigWig signal p-value ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF128QKO, ENCFF478WUL, ENCFF636PQI 1090362509 ENCODE Processing Pipeline 8dd12f3ba40afe9a9b2ad6203623e21a https://www.encodeproject.org/files/ENCFF004NMM/@@download/ENCFF004NMM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF733QJW bigWig fold change over control ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF128QKO, ENCFF478WUL 788688439 ENCODE Processing Pipeline 8833ca27acb81fc09885e822b244e258 https://www.encodeproject.org/files/ENCFF733QJW/@@download/ENCFF733QJW.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF426XEQ bigWig fold change over control ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF636PQI 710055762 ENCODE Processing Pipeline fd4ec3d2d78ca9bd22cc64cb57fce75e https://www.encodeproject.org/files/ENCFF426XEQ/@@download/ENCFF426XEQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF756OLL bigWig fold change over control ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF128QKO, ENCFF478WUL, ENCFF636PQI 1132035738 ENCODE Processing Pipeline 3eb085bbeda3bd906b84dc661c90570e https://www.encodeproject.org/files/ENCFF756OLL/@@download/ENCFF756OLL.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF920SNN bigBed narrowPeak replicated peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF882RGD 3193985 ENCODE Processing Pipeline b91e14ca0b7fb5c2e0f1e4010e04b703 https://www.encodeproject.org/files/ENCFF920SNN/@@download/ENCFF920SNN.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF882RGD bed narrowPeak replicated peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF143DTF, ENCFF516DPM, ENCFF614KUI 1398203 ENCODE Processing Pipeline 4b996c1db772a6067c2acd9cc432ded7 https://www.encodeproject.org/files/ENCFF882RGD/@@download/ENCFF882RGD.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF707WKL bam unfiltered alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF288PUA 2142021167 ENCODE Processing Pipeline 530b204992f2d4fea2feb7f3070d8cb1 https://www.encodeproject.org/files/ENCFF707WKL/@@download/ENCFF707WKL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF584JFB bam unfiltered alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF222ACN 2851670779 ENCODE Processing Pipeline e91e116c3a8872555082024af450324f https://www.encodeproject.org/files/ENCFF584JFB/@@download/ENCFF584JFB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF004LLG bam alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF288PUA 1503734955 ENCODE Processing Pipeline ca43a27354e7778a9fa6337406a43423 https://www.encodeproject.org/files/ENCFF004LLG/@@download/ENCFF004LLG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF886DGE bam alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF222ACN 1927862863 ENCODE Processing Pipeline dda49472577fdc91d032d63ad9eefcd8 https://www.encodeproject.org/files/ENCFF886DGE/@@download/ENCFF886DGE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF801SST bed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF886DGE 1637422 ENCODE Processing Pipeline 2601543e63b109041c7d1fcc8d520e4b https://www.encodeproject.org/files/ENCFF801SST/@@download/ENCFF801SST.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF635AMC bed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF004LLG, ENCFF556BOJ, ENCFF708TTS, ENCFF886DGE 2143337 ENCODE Processing Pipeline 9d9b717a0baaa55993e7b15233d41447 https://www.encodeproject.org/files/ENCFF635AMC/@@download/ENCFF635AMC.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF407FQB bed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF004LLG, ENCFF708TTS 1581206 ENCODE Processing Pipeline 76326ecf5eef74c0db09df765c5e18de https://www.encodeproject.org/files/ENCFF407FQB/@@download/ENCFF407FQB.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF219UPI bigBed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF801SST 3684935 ENCODE Processing Pipeline 43a04aca3264c2bc3098af9ed3b52327 https://www.encodeproject.org/files/ENCFF219UPI/@@download/ENCFF219UPI.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF442PTH bigBed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF635AMC 5847870 ENCODE Processing Pipeline b261510d2490cd12dc6f4f32e101a792 https://www.encodeproject.org/files/ENCFF442PTH/@@download/ENCFF442PTH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF640VIK bigBed narrowPeak peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF407FQB 3538228 ENCODE Processing Pipeline 6bff3e830d7997b85f9c79b3e1058235 https://www.encodeproject.org/files/ENCFF640VIK/@@download/ENCFF640VIK.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF145SMF bigWig signal p-value ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF886DGE 703021480 ENCODE Processing Pipeline 507d84892d59264a8fb89c5a4848a027 https://www.encodeproject.org/files/ENCFF145SMF/@@download/ENCFF145SMF.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF961HMS bigWig signal p-value ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF004LLG, ENCFF708TTS 532211728 ENCODE Processing Pipeline d9f7d9fdf5261732749bf51cdb8d9f95 https://www.encodeproject.org/files/ENCFF961HMS/@@download/ENCFF961HMS.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF332XAD bigWig signal p-value ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF004LLG, ENCFF556BOJ, ENCFF708TTS, ENCFF886DGE 913143804 ENCODE Processing Pipeline 5781b66508bba58cad47a744ae78fbfd https://www.encodeproject.org/files/ENCFF332XAD/@@download/ENCFF332XAD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF136LTO bigWig fold change over control ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF886DGE 723200213 ENCODE Processing Pipeline 0b21cd09bc2f3817ab59ad9d07a65ab9 https://www.encodeproject.org/files/ENCFF136LTO/@@download/ENCFF136LTO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF643CFH bigWig fold change over control ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF004LLG, ENCFF708TTS 625004886 ENCODE Processing Pipeline 4260abfc144c03425a1de25c3b2b3c85 https://www.encodeproject.org/files/ENCFF643CFH/@@download/ENCFF643CFH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF033PTH bigWig fold change over control ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF004LLG, ENCFF556BOJ, ENCFF708TTS, ENCFF886DGE 1253610789 ENCODE Processing Pipeline ce7e32e878df5897336983cca142df07 https://www.encodeproject.org/files/ENCFF033PTH/@@download/ENCFF033PTH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF384LAY bed narrowPeak replicated peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF407FQB, ENCFF635AMC, ENCFF801SST 1308201 ENCODE Processing Pipeline ad21a54064eeb4da921c9cde306a5be9 https://www.encodeproject.org/files/ENCFF384LAY/@@download/ENCFF384LAY.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF603NWM bigBed narrowPeak replicated peaks ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF384LAY 2980116 ENCODE Processing Pipeline 3f8dd155e8bf30511da602210b9e26dc https://www.encodeproject.org/files/ENCFF603NWM/@@download/ENCFF603NWM.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF634YYY fastq reads ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1918371397 Bing Ren, UCSD f18b113149fe145cdf5b85e3d36250c8 SRA:SRR3652522 https://www.encodeproject.org/files/ENCFF634YYY/@@download/ENCFF634YYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF992TXH fastq reads ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 3 50 single-ended 833296959 Bing Ren, UCSD e5ab5fa6fafb6c602367d761fcac5a3b SRA:SRR3652523 https://www.encodeproject.org/files/ENCFF992TXH/@@download/ENCFF992TXH.fastq.gz Illumina HiSeq 2500 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF196CAL fastq reads ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1426072751 Bing Ren, UCSD c59c8abcaf342697714afec5fe63bed5 SRA:SRR3652524 https://www.encodeproject.org/files/ENCFF196CAL/@@download/ENCFF196CAL.fastq.gz Illumina HiSeq 2500 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF884TCF fastq reads ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2276154679 Bing Ren, UCSD a4953e774969674c53915ba1df9c89fc SRA:SRR3652525 https://www.encodeproject.org/files/ENCFF884TCF/@@download/ENCFF884TCF.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF368WCQ fastq reads ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1688181834 Bing Ren, UCSD 787399ad7c6c138067a3dd160a41180f SRA:SRR3652526 https://www.encodeproject.org/files/ENCFF368WCQ/@@download/ENCFF368WCQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF618USE/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF433AMY bam alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF196CAL, ENCFF634YYY, ENCFF806TVZ, ENCFF992TXH 2929452352 ENCODE Processing Pipeline 2259ee5baf88d9ad2199cbec1bd87023 https://www.encodeproject.org/files/ENCFF433AMY/@@download/ENCFF433AMY.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF458GHP bam alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF368WCQ, ENCFF806TVZ, ENCFF884TCF 2996954088 ENCODE Processing Pipeline 27c1df054af11353c507394408f6606c https://www.encodeproject.org/files/ENCFF458GHP/@@download/ENCFF458GHP.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF846RQT bed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF458GHP, ENCFF478WUL 2555384 ENCODE Processing Pipeline c4320a8a4548f46a843fa3b68f435a29 https://www.encodeproject.org/files/ENCFF846RQT/@@download/ENCFF846RQT.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF212FFG bed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF433AMY, ENCFF478WUL 2919088 ENCODE Processing Pipeline 411049bf2113a81284b202f6d5781c91 https://www.encodeproject.org/files/ENCFF212FFG/@@download/ENCFF212FFG.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF976DXK bed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF433AMY, ENCFF458GHP, ENCFF478WUL 2607906 ENCODE Processing Pipeline c5324b446643670988403dbc39d15900 https://www.encodeproject.org/files/ENCFF976DXK/@@download/ENCFF976DXK.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF344PWE bigBed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF846RQT 5803722 ENCODE Processing Pipeline 587032c258e7d3d9383b6c49902e8713 https://www.encodeproject.org/files/ENCFF344PWE/@@download/ENCFF344PWE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF968IBM bigBed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF976DXK 5670627 ENCODE Processing Pipeline e504091c7bfd608cddd6241dfad6e3ea https://www.encodeproject.org/files/ENCFF968IBM/@@download/ENCFF968IBM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF848QTU bigBed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF212FFG 6415720 ENCODE Processing Pipeline 1137a64436e0b6963fbe521372bf4fba https://www.encodeproject.org/files/ENCFF848QTU/@@download/ENCFF848QTU.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF195KGI bigWig signal p-value ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF458GHP, ENCFF478WUL 936751938 ENCODE Processing Pipeline 3f09253197ef7ae50f287020802ef270 https://www.encodeproject.org/files/ENCFF195KGI/@@download/ENCFF195KGI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF583NKY bigWig signal p-value ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF433AMY, ENCFF478WUL 1006646893 ENCODE Processing Pipeline a0aa5f60f869080acc60d0d028748123 https://www.encodeproject.org/files/ENCFF583NKY/@@download/ENCFF583NKY.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF624GGV bigWig fold change over control ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF458GHP, ENCFF478WUL 1084683667 ENCODE Processing Pipeline 3a465b572f34301c258aeab7656c1f3b https://www.encodeproject.org/files/ENCFF624GGV/@@download/ENCFF624GGV.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF869SWE bigWig signal p-value ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF433AMY, ENCFF458GHP, ENCFF478WUL 1319277437 ENCODE Processing Pipeline 48bc54ba8625c39f4dde3887e0d7c838 https://www.encodeproject.org/files/ENCFF869SWE/@@download/ENCFF869SWE.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF830WNF bigWig fold change over control ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF433AMY, ENCFF478WUL 1046464150 ENCODE Processing Pipeline f68cd21249d45ff8eba6415377f13d77 https://www.encodeproject.org/files/ENCFF830WNF/@@download/ENCFF830WNF.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF131SIH bigWig fold change over control ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF433AMY, ENCFF458GHP, ENCFF478WUL 1557479413 ENCODE Processing Pipeline cc7ccda99a5d0789d173465da333b4fe https://www.encodeproject.org/files/ENCFF131SIH/@@download/ENCFF131SIH.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF945QKW bed narrowPeak replicated peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF212FFG, ENCFF846RQT, ENCFF976DXK 2331729 ENCODE Processing Pipeline 2c8b12d8b29bebfde475b14177d63166 https://www.encodeproject.org/files/ENCFF945QKW/@@download/ENCFF945QKW.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF400PJE bigBed narrowPeak replicated peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF945QKW 4205754 ENCODE Processing Pipeline 922624028ec592679777d3e801d95491 https://www.encodeproject.org/files/ENCFF400PJE/@@download/ENCFF400PJE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF273HAT bam unfiltered alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF196CAL, ENCFF634YYY, ENCFF992TXH 4916002902 ENCODE Processing Pipeline 51247f1eb9f914b7e17245c92d883498 https://www.encodeproject.org/files/ENCFF273HAT/@@download/ENCFF273HAT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF163ALK bam unfiltered alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF368WCQ, ENCFF884TCF 4725672840 ENCODE Processing Pipeline 14d0daacccd0cd64ed451188c97cb5d5 https://www.encodeproject.org/files/ENCFF163ALK/@@download/ENCFF163ALK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF452WYT bam alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF196CAL, ENCFF634YYY, ENCFF992TXH 2928786979 ENCODE Processing Pipeline 0dbb3e90d38c56a6b9ba7d2d60d010e3 https://www.encodeproject.org/files/ENCFF452WYT/@@download/ENCFF452WYT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF764RAD bam alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF368WCQ, ENCFF884TCF 2996280648 ENCODE Processing Pipeline 38608d9a6a1a2f8f41db1f876b27fae6 https://www.encodeproject.org/files/ENCFF764RAD/@@download/ENCFF764RAD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF311QHT bed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF708TTS, ENCFF764RAD 2573328 ENCODE Processing Pipeline 57356870f4a7b169ed72116b8dfcc384 https://www.encodeproject.org/files/ENCFF311QHT/@@download/ENCFF311QHT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF941VAM bed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF452WYT, ENCFF708TTS 2868895 ENCODE Processing Pipeline 8cea477a4e3233020868711baefe61a1 https://www.encodeproject.org/files/ENCFF941VAM/@@download/ENCFF941VAM.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF191OUI bed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF452WYT, ENCFF556BOJ, ENCFF708TTS, ENCFF764RAD 2916551 ENCODE Processing Pipeline 4696f2feca9bf575d47cc1daec2732b9 https://www.encodeproject.org/files/ENCFF191OUI/@@download/ENCFF191OUI.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF807FHK bigBed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF311QHT 5835852 ENCODE Processing Pipeline 3ac3b8e75f7714bbce30bf44af0adde6 https://www.encodeproject.org/files/ENCFF807FHK/@@download/ENCFF807FHK.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF638ACE bigBed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF941VAM 6295916 ENCODE Processing Pipeline f94b9538ece05471fb04240f5bb903b9 https://www.encodeproject.org/files/ENCFF638ACE/@@download/ENCFF638ACE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF512GVT bigBed narrowPeak peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF191OUI 6403447 ENCODE Processing Pipeline ba017f03956385e2e57bacae8b708fe1 https://www.encodeproject.org/files/ENCFF512GVT/@@download/ENCFF512GVT.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF530NCD bigWig signal p-value ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF708TTS, ENCFF764RAD 1060083535 ENCODE Processing Pipeline 6826fcf66439041a9f748d0ab29a90b5 https://www.encodeproject.org/files/ENCFF530NCD/@@download/ENCFF530NCD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF787YPH bigWig signal p-value ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF452WYT, ENCFF708TTS 695339163 ENCODE Processing Pipeline 25dcba0fecb0691f579a88267ce194dd https://www.encodeproject.org/files/ENCFF787YPH/@@download/ENCFF787YPH.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF796NBN bigWig signal p-value ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF452WYT, ENCFF556BOJ, ENCFF708TTS, ENCFF764RAD 1384176769 ENCODE Processing Pipeline 4ed18e6dac253e7d6aade2d9523e2891 https://www.encodeproject.org/files/ENCFF796NBN/@@download/ENCFF796NBN.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF604EGL bigWig fold change over control ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF708TTS, ENCFF764RAD 1198756922 ENCODE Processing Pipeline f503ec5daad743842e9d2a24e65c0853 https://www.encodeproject.org/files/ENCFF604EGL/@@download/ENCFF604EGL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF924COZ bigWig fold change over control ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF452WYT, ENCFF708TTS 941032154 ENCODE Processing Pipeline 18749120da61b6df0537d83e75a17563 https://www.encodeproject.org/files/ENCFF924COZ/@@download/ENCFF924COZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF464IYE bigWig fold change over control ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF452WYT, ENCFF556BOJ, ENCFF708TTS, ENCFF764RAD 1684097963 ENCODE Processing Pipeline f8e7b1051ea1f8e3ee30eec94ed0b965 https://www.encodeproject.org/files/ENCFF464IYE/@@download/ENCFF464IYE.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF654WPF bed narrowPeak replicated peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF191OUI, ENCFF311QHT, ENCFF941VAM 2199282 ENCODE Processing Pipeline dbc57e2d4e34571cdf3672537e48d553 https://www.encodeproject.org/files/ENCFF654WPF/@@download/ENCFF654WPF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF362KVK bigBed narrowPeak replicated peaks ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF654WPF 3883035 ENCODE Processing Pipeline ba108cb0cb2ed7e09a02b1b8190915a6 https://www.encodeproject.org/files/ENCFF362KVK/@@download/ENCFF362KVK.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001ZTU fastq reads ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 894112142 Bing Ren, UCSD cfbee6341bd8c702fb4dee8038720c27 SRA:SRR3651843 https://www.encodeproject.org/files/ENCFF001ZTU/@@download/ENCFF001ZTU.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUJ/ released low read length, control low read depth, low read depth ENCFF001ZUC fastq reads ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 747752272 Bing Ren, UCSD 0122772b3d7a1b594df42d94cf57c7c2 SRA:SRR3651844 https://www.encodeproject.org/files/ENCFF001ZUC/@@download/ENCFF001ZUC.fastq.gz Illumina HiSeq 2500 /files/ENCFF001ZUI/ released low read length, control low read depth, low read depth ENCFF531UZZ bam alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF001ZTU, ENCFF806TVZ 701588218 ENCODE Processing Pipeline df2538526ce96851278fecad1539ee88 https://www.encodeproject.org/files/ENCFF531UZZ/@@download/ENCFF531UZZ.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF389HKZ bam alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF001ZUC, ENCFF806TVZ 604447917 ENCODE Processing Pipeline c50b27634ac95bc364ea4b1d8ef8ef8d https://www.encodeproject.org/files/ENCFF389HKZ/@@download/ENCFF389HKZ.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF364BXW bed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF531UZZ, ENCFF851KTA 513041 ENCODE Processing Pipeline f44c619ccf95b5254131738fbd7245b5 https://www.encodeproject.org/files/ENCFF364BXW/@@download/ENCFF364BXW.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF715UHV bed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265KAG, ENCFF389HKZ, ENCFF531UZZ, ENCFF851KTA 455428 ENCODE Processing Pipeline c432503a9c7bfc3a4efb2f5183f4e9ad https://www.encodeproject.org/files/ENCFF715UHV/@@download/ENCFF715UHV.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF052ULN bed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF389HKZ, ENCFF851KTA 468590 ENCODE Processing Pipeline ae8c209cb92519e2aeb5f95d4e71c549 https://www.encodeproject.org/files/ENCFF052ULN/@@download/ENCFF052ULN.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF793BKV bigBed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF052ULN 1574638 ENCODE Processing Pipeline 4db21801bbc9cef1b30f21694b01a509 https://www.encodeproject.org/files/ENCFF793BKV/@@download/ENCFF793BKV.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF890UQM bigBed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF364BXW 1680720 ENCODE Processing Pipeline e47496f835c0b4ba07840a70b0e366e8 https://www.encodeproject.org/files/ENCFF890UQM/@@download/ENCFF890UQM.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF923HDO bigBed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF715UHV 1520525 ENCODE Processing Pipeline b0823a36679ef624ccea7894f22bd6e0 https://www.encodeproject.org/files/ENCFF923HDO/@@download/ENCFF923HDO.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF825TTF bigWig signal p-value ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF531UZZ, ENCFF851KTA 310595108 ENCODE Processing Pipeline 6fe0201f8262634a6ac81fdeb4e42ce7 https://www.encodeproject.org/files/ENCFF825TTF/@@download/ENCFF825TTF.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF990SFK bigWig signal p-value ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF389HKZ, ENCFF851KTA 269775063 ENCODE Processing Pipeline 59042d0d7d11da1b85bebf42e9b94d3b https://www.encodeproject.org/files/ENCFF990SFK/@@download/ENCFF990SFK.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF135ONL bigWig signal p-value ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265KAG, ENCFF389HKZ, ENCFF531UZZ, ENCFF851KTA 381934910 ENCODE Processing Pipeline f6dd1a62a8f87614924fb92287c291a8 https://www.encodeproject.org/files/ENCFF135ONL/@@download/ENCFF135ONL.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF933IFP bigWig fold change over control ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF265KAG, ENCFF389HKZ, ENCFF851KTA 251406932 ENCODE Processing Pipeline f4761b1c9922e63311313a703749ad20 https://www.encodeproject.org/files/ENCFF933IFP/@@download/ENCFF933IFP.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF566TOX bigWig fold change over control ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF265KAG, ENCFF531UZZ, ENCFF851KTA 289812321 ENCODE Processing Pipeline bdc077d63ebb9fb0d82c77641b37333e https://www.encodeproject.org/files/ENCFF566TOX/@@download/ENCFF566TOX.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF458LEO bed narrowPeak replicated peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF052ULN, ENCFF364BXW, ENCFF715UHV 546225 ENCODE Processing Pipeline 3b3ef34a8fb8bb4b5b8cde360bb7a9ab https://www.encodeproject.org/files/ENCFF458LEO/@@download/ENCFF458LEO.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF147IKK bigWig fold change over control ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265KAG, ENCFF389HKZ, ENCFF531UZZ, ENCFF851KTA 448491088 ENCODE Processing Pipeline 99eeaa13154fcc5bfcf5099b4d68003b https://www.encodeproject.org/files/ENCFF147IKK/@@download/ENCFF147IKK.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF134TBK bigBed narrowPeak replicated peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF458LEO 1415332 ENCODE Processing Pipeline 4eb968109011cc0579ce3ca60ec094de https://www.encodeproject.org/files/ENCFF134TBK/@@download/ENCFF134TBK.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF760QYZ bam unfiltered alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTU, ENCFF018NEO 1103158272 ENCODE Processing Pipeline bcf1cecbbc774ee0161e508d2e6a53ab https://www.encodeproject.org/files/ENCFF760QYZ/@@download/ENCFF760QYZ.bam mm10 released low read length, control low read depth, low read depth ENCFF717QDV bam unfiltered alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUC, ENCFF018NEO 930388453 ENCODE Processing Pipeline 511b218afe00f04d758a5936bdca98b9 https://www.encodeproject.org/files/ENCFF717QDV/@@download/ENCFF717QDV.bam mm10 released low read length, control low read depth, low read depth ENCFF883AUA bam alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTU, ENCFF018NEO 701392426 ENCODE Processing Pipeline 2fb68f8f581f031a86cfbb00e1cadcb3 https://www.encodeproject.org/files/ENCFF883AUA/@@download/ENCFF883AUA.bam mm10 released low read length, control low read depth, low read depth ENCFF904OSZ bam alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUC, ENCFF018NEO 604254033 ENCODE Processing Pipeline 3082a838154dd7ca084ade993ee79d4a https://www.encodeproject.org/files/ENCFF904OSZ/@@download/ENCFF904OSZ.bam mm10 released low read length, control low read depth, low read depth ENCFF213YGL bed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF883AUA, ENCFF904OSZ 453549 ENCODE Processing Pipeline e91360382731f6014b44d0a3026579f4 https://www.encodeproject.org/files/ENCFF213YGL/@@download/ENCFF213YGL.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF535XXU bigBed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF213YGL 1516537 ENCODE Processing Pipeline 0fb23bc980463e1cb650422c493f6a87 https://www.encodeproject.org/files/ENCFF535XXU/@@download/ENCFF535XXU.bigBed mm10 released low read length, control low read depth, low read depth ENCFF418DXY bigWig signal p-value ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF883AUA 368454983 ENCODE Processing Pipeline a54b7ab2c07a6f5d7f234b2af7a02eb4 https://www.encodeproject.org/files/ENCFF418DXY/@@download/ENCFF418DXY.bigWig mm10 released low read length, control low read depth, low read depth ENCFF393TYW bigWig signal p-value ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF904OSZ 217265759 ENCODE Processing Pipeline 0648dd21ac0a557826fa277cb01c8418 https://www.encodeproject.org/files/ENCFF393TYW/@@download/ENCFF393TYW.bigWig mm10 released low read length, control low read depth, low read depth ENCFF627ZLA bigWig fold change over control ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF883AUA, ENCFF904OSZ 456383326 ENCODE Processing Pipeline c0016199c5e906800a7acc7617c67fc5 https://www.encodeproject.org/files/ENCFF627ZLA/@@download/ENCFF627ZLA.bigWig mm10 released low read length, control low read depth, low read depth ENCFF100TNO bed narrowPeak replicated peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF213YGL, ENCFF381SOY, ENCFF480VDI 537243 ENCODE Processing Pipeline 33b1c93f700ed8cfa8cd2d3c51d5efc6 https://www.encodeproject.org/files/ENCFF100TNO/@@download/ENCFF100TNO.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF480VDI bed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF883AUA 457777 ENCODE Processing Pipeline 122db2878dc20c3b8cf130fc15faac87 https://www.encodeproject.org/files/ENCFF480VDI/@@download/ENCFF480VDI.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF381SOY bed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF904OSZ 434497 ENCODE Processing Pipeline 0e4e6c98c059e384da1b719d0f0791ba https://www.encodeproject.org/files/ENCFF381SOY/@@download/ENCFF381SOY.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF769WKA bigBed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF480VDI 1536951 ENCODE Processing Pipeline f4006e12e5670c69ec4e10d6269189bf https://www.encodeproject.org/files/ENCFF769WKA/@@download/ENCFF769WKA.bigBed mm10 released low read length, control low read depth, low read depth ENCFF004ISH bigWig signal p-value ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF377IXU, ENCFF512NUW, ENCFF883AUA, ENCFF904OSZ 393650333 ENCODE Processing Pipeline e53eb4f3ec545f2c040e9b7d1d0fc5fd https://www.encodeproject.org/files/ENCFF004ISH/@@download/ENCFF004ISH.bigWig mm10 released low read length, control low read depth, low read depth ENCFF845RBG bigBed narrowPeak replicated peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF100TNO 1392144 ENCODE Processing Pipeline 71b7f2183fd731470fd92ab24adf0fc8 https://www.encodeproject.org/files/ENCFF845RBG/@@download/ENCFF845RBG.bigBed mm10 released low read length, control low read depth, low read depth ENCFF283KKL bigWig fold change over control ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF512NUW, ENCFF904OSZ 210551410 ENCODE Processing Pipeline f698afdf55d2e7f60bdd8fbf7dfbfef9 https://www.encodeproject.org/files/ENCFF283KKL/@@download/ENCFF283KKL.bigWig mm10 released low read length, control low read depth, low read depth ENCFF796XWJ bigBed narrowPeak peaks ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF381SOY 1501146 ENCODE Processing Pipeline 69e7b318106021edaae2f481befccdb1 https://www.encodeproject.org/files/ENCFF796XWJ/@@download/ENCFF796XWJ.bigBed mm10 released low read length, control low read depth, low read depth ENCFF630LWY bigWig fold change over control ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF377IXU, ENCFF512NUW, ENCFF883AUA 300271542 ENCODE Processing Pipeline 77d185ec50dce5c18cfc5dd5d0e8f78e https://www.encodeproject.org/files/ENCFF630LWY/@@download/ENCFF630LWY.bigWig mm10 released low read length, control low read depth, low read depth ENCFF057AHM fastq reads ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 1809104782 Bing Ren, UCSD 92bda7763c6e93f47105ba751cbdc64c SRA:SRR3651551 https://www.encodeproject.org/files/ENCFF057AHM/@@download/ENCFF057AHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released mild to moderate bottlenecking, inconsistent platforms ENCFF149QNC fastq reads ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1483357360 Bing Ren, UCSD 97b9e71cf28323a90319a0188f6bb41a SRA:SRR3651550 https://www.encodeproject.org/files/ENCFF149QNC/@@download/ENCFF149QNC.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released mild to moderate bottlenecking, inconsistent platforms ENCFF905ENW bam alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF057AHM, ENCFF806TVZ 1438721478 ENCODE Processing Pipeline 5b9159e2ae4affd4c35fa6d909f06bcf https://www.encodeproject.org/files/ENCFF905ENW/@@download/ENCFF905ENW.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF584AOB bam alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF149QNC, ENCFF806TVZ 1276742387 ENCODE Processing Pipeline 2178ff5d1f0043a5edf1012a29241fef https://www.encodeproject.org/files/ENCFF584AOB/@@download/ENCFF584AOB.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF503HJQ bed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF584AOB 811365 ENCODE Processing Pipeline 1b2c22f51ba8b2f38813c15c2249ec1d https://www.encodeproject.org/files/ENCFF503HJQ/@@download/ENCFF503HJQ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF645RTV bed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF905ENW 796329 ENCODE Processing Pipeline 2e0bcbf54fc03a606113bb52e3e27af3 https://www.encodeproject.org/files/ENCFF645RTV/@@download/ENCFF645RTV.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF255UXL bed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF478WUL, ENCFF584AOB, ENCFF905ENW 894751 ENCODE Processing Pipeline 9f6ef9774e02e403078ef71dc3c33dbf https://www.encodeproject.org/files/ENCFF255UXL/@@download/ENCFF255UXL.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF804CKO bigBed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF645RTV 2549319 ENCODE Processing Pipeline 0fee6853d325ec15c0db4dc7f82e9913 https://www.encodeproject.org/files/ENCFF804CKO/@@download/ENCFF804CKO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF986OUO bigBed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF503HJQ 2593811 ENCODE Processing Pipeline f204aa30a8dd1142dabf32fbf6704870 https://www.encodeproject.org/files/ENCFF986OUO/@@download/ENCFF986OUO.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF985OTW bigBed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF255UXL 2825578 ENCODE Processing Pipeline 739654ad6518e3e8c1a88e1853b6dc3e https://www.encodeproject.org/files/ENCFF985OTW/@@download/ENCFF985OTW.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF008ZKB bigWig signal p-value ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF905ENW 744133972 ENCODE Processing Pipeline 724030991acb93b978ec02b29bf889d2 https://www.encodeproject.org/files/ENCFF008ZKB/@@download/ENCFF008ZKB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF610CKD bigWig signal p-value ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF584AOB 631258056 ENCODE Processing Pipeline 6986f07421e09a745ed88d6a52c8aa67 https://www.encodeproject.org/files/ENCFF610CKD/@@download/ENCFF610CKD.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF150GRA bigWig signal p-value ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF478WUL, ENCFF584AOB, ENCFF905ENW 881320799 ENCODE Processing Pipeline a8d2b475bdea4db9e22ff0aa9b287512 https://www.encodeproject.org/files/ENCFF150GRA/@@download/ENCFF150GRA.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF264VHU bigWig fold change over control ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF905ENW 669243048 ENCODE Processing Pipeline ac0daedb1bc9c20fd97a36602d3ece4f https://www.encodeproject.org/files/ENCFF264VHU/@@download/ENCFF264VHU.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF553KDX bigWig fold change over control ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF478WUL, ENCFF584AOB 673139248 ENCODE Processing Pipeline 6a136012dd47592bcaa597fabd54f723 https://www.encodeproject.org/files/ENCFF553KDX/@@download/ENCFF553KDX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF721XIX bigWig fold change over control ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF478WUL, ENCFF584AOB, ENCFF905ENW 994071396 ENCODE Processing Pipeline 561ac7c09918484c73218416380279d2 https://www.encodeproject.org/files/ENCFF721XIX/@@download/ENCFF721XIX.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF262IJJ bed narrowPeak replicated peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF255UXL, ENCFF503HJQ, ENCFF645RTV 881958 ENCODE Processing Pipeline 368aa25e57218a8aa9db36ffcabb18f6 https://www.encodeproject.org/files/ENCFF262IJJ/@@download/ENCFF262IJJ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF049QUX bigBed narrowPeak replicated peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF262IJJ 2112238 ENCODE Processing Pipeline 625d1fd7e59f1d368e30415871c73d1f https://www.encodeproject.org/files/ENCFF049QUX/@@download/ENCFF049QUX.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms ENCFF716PDW bam unfiltered alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF149QNC 1761076588 ENCODE Processing Pipeline 8cc840b67259673734f52c4114eba28e https://www.encodeproject.org/files/ENCFF716PDW/@@download/ENCFF716PDW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF483JVL bam unfiltered alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF057AHM 2110185311 ENCODE Processing Pipeline edefe96b9127573b601e36bce456c263 https://www.encodeproject.org/files/ENCFF483JVL/@@download/ENCFF483JVL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF014AXW bam alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF149QNC 1276442451 ENCODE Processing Pipeline 82c350d38ac182116ca1433c31550d7b https://www.encodeproject.org/files/ENCFF014AXW/@@download/ENCFF014AXW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF547RHW bam alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF057AHM 1438431150 ENCODE Processing Pipeline 40077f0a2e05b087e605c4c62e5a720f https://www.encodeproject.org/files/ENCFF547RHW/@@download/ENCFF547RHW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF346FUH bigBed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF184VQX 2563416 ENCODE Processing Pipeline a957dcec803483bc01ed738663b688a9 https://www.encodeproject.org/files/ENCFF346FUH/@@download/ENCFF346FUH.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF728SVB bigBed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF986LEW 2837964 ENCODE Processing Pipeline 8b78d97024f5adb7f6fb9c733c9aa9da https://www.encodeproject.org/files/ENCFF728SVB/@@download/ENCFF728SVB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF986LEW bed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF014AXW, ENCFF547RHW, ENCFF556BOJ, ENCFF708TTS 899696 ENCODE Processing Pipeline addcd4b5997a87148726d60cca5310bf https://www.encodeproject.org/files/ENCFF986LEW/@@download/ENCFF986LEW.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF184VQX bed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF547RHW, ENCFF556BOJ 799086 ENCODE Processing Pipeline f0e91e1853b5e098c139397923634834 https://www.encodeproject.org/files/ENCFF184VQX/@@download/ENCFF184VQX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF454QIY bed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF014AXW, ENCFF708TTS 786822 ENCODE Processing Pipeline ccb56fefb7cc578ef01d963b1b538833 https://www.encodeproject.org/files/ENCFF454QIY/@@download/ENCFF454QIY.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF836JOS bigBed narrowPeak peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF454QIY 2514490 ENCODE Processing Pipeline 6107470d73fc386540e11b4c3e544795 https://www.encodeproject.org/files/ENCFF836JOS/@@download/ENCFF836JOS.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF039NWL bigWig signal p-value ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF547RHW, ENCFF556BOJ 564324841 ENCODE Processing Pipeline 3a2f2d4502b4aee38cc8cfcd0ef04fe1 https://www.encodeproject.org/files/ENCFF039NWL/@@download/ENCFF039NWL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF980YEO bigWig signal p-value ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF014AXW, ENCFF708TTS 506893739 ENCODE Processing Pipeline cf022710a477267a31de813c50553ae1 https://www.encodeproject.org/files/ENCFF980YEO/@@download/ENCFF980YEO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF255MFV bigWig signal p-value ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF014AXW, ENCFF547RHW, ENCFF556BOJ, ENCFF708TTS 1000735788 ENCODE Processing Pipeline c6d38ef89c614f20c9bd5d0ceb4e1d83 https://www.encodeproject.org/files/ENCFF255MFV/@@download/ENCFF255MFV.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF547BLZ bigWig fold change over control ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF547RHW, ENCFF556BOJ 601596966 ENCODE Processing Pipeline 2f9868eaf65702349fe545164ab089ef https://www.encodeproject.org/files/ENCFF547BLZ/@@download/ENCFF547BLZ.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF321TVO bigWig fold change over control ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF014AXW, ENCFF708TTS 558803213 ENCODE Processing Pipeline bd9bb44a178be5ae2aed2eda934fec76 https://www.encodeproject.org/files/ENCFF321TVO/@@download/ENCFF321TVO.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF900GLU bigWig fold change over control ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF014AXW, ENCFF547RHW, ENCFF556BOJ, ENCFF708TTS 1120140293 ENCODE Processing Pipeline 37fe0ebecdc69dfa4b993fc97f7bf3b1 https://www.encodeproject.org/files/ENCFF900GLU/@@download/ENCFF900GLU.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF377UCX bed narrowPeak replicated peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF184VQX, ENCFF454QIY, ENCFF986LEW 905645 ENCODE Processing Pipeline 6c549edc51448c4dc941c8a45c1d6059 https://www.encodeproject.org/files/ENCFF377UCX/@@download/ENCFF377UCX.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF403VFE bigBed narrowPeak replicated peaks ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF377UCX 2159953 ENCODE Processing Pipeline 5c17cf07e3b2e8a416d00a44f9bb75ff https://www.encodeproject.org/files/ENCFF403VFE/@@download/ENCFF403VFE.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF001LIG bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIV 215329006 Bing Ren, UCSD 367a8614a33a60b218a6b056cd7239dd https://www.encodeproject.org/files/ENCFF001LIG/@@download/ENCFF001LIG.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LIH bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIW 590139828 Bing Ren, UCSD 029d69499551cc1505e7e7a7fbeca62c https://www.encodeproject.org/files/ENCFF001LIH/@@download/ENCFF001LIH.bam mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LII bigBed broadPeak peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAB 490533 Bing Ren, UCSD 3ce44e997d627e2ff545144ad38ee8ad https://www.encodeproject.org/files/ENCFF001LII/@@download/ENCFF001LII.bigBed mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LIM bigWig signal ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIG, ENCFF001LIH 68260234 Bing Ren, UCSD 6b832220a5f3e32fc562e380df2aaeda https://www.encodeproject.org/files/ENCFF001LIM/@@download/ENCFF001LIM.bigWig mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LIV fastq reads ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 857670263 Bing Ren, UCSD 51b80cb1f332091dfbbec78c834e211a https://www.encodeproject.org/files/ENCFF001LIV/@@download/ENCFF001LIV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KCX/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001LIW fastq reads ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 904548028 Bing Ren, UCSD d6167997aa6af2471e51a9e66a26c951 https://www.encodeproject.org/files/ENCFF001LIW/@@download/ENCFF001LIW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KDF/ released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001YAB bed broadPeak peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LIG, ENCFF001LIH 266618 Bing Ren, UCSD ebda03ec0ccea6878095d3d899188186 https://www.encodeproject.org/files/ENCFF001YAB/@@download/ENCFF001YAB.bed.gz mm9 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF431EKZ bam unfiltered alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIW, ENCFF018NEO 948750062 ENCODE Processing Pipeline 815a7c7869a5b024ab4047057038a4bd https://www.encodeproject.org/files/ENCFF431EKZ/@@download/ENCFF431EKZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF317KQT bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIW, ENCFF018NEO 436048000 ENCODE Processing Pipeline 5d8c665bb48f430e00ca7669f7d42269 https://www.encodeproject.org/files/ENCFF317KQT/@@download/ENCFF317KQT.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF508RPT bam unfiltered alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIV, ENCFF018NEO 867182811 ENCODE Processing Pipeline e99b19c4785cd0a49cb521513260f21d https://www.encodeproject.org/files/ENCFF508RPT/@@download/ENCFF508RPT.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF623XLE bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIV, ENCFF018NEO 249245474 ENCODE Processing Pipeline 4bcefa9f7856352790db72d3df538d08 https://www.encodeproject.org/files/ENCFF623XLE/@@download/ENCFF623XLE.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF768BAT bigWig signal p-value ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF623XLE, ENCFF745XER 272020166 ENCODE Processing Pipeline cf109361bb0780a8adc483b984c85933 https://www.encodeproject.org/files/ENCFF768BAT/@@download/ENCFF768BAT.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF250IEX bigWig fold change over control ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF317KQT, ENCFF555HBY, ENCFF745XER 189757885 ENCODE Processing Pipeline b6e2ee70c7eebeeb8cb46c71fa648bf0 https://www.encodeproject.org/files/ENCFF250IEX/@@download/ENCFF250IEX.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF597EPU bed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF317KQT, ENCFF555HBY, ENCFF745XER 4161424 ENCODE Processing Pipeline 7f8cc87c7bf8bdad08cd95f7e367678e https://www.encodeproject.org/files/ENCFF597EPU/@@download/ENCFF597EPU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF631EVW bed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF623XLE, ENCFF745XER 2214137 ENCODE Processing Pipeline e60a1a5b238692b38adf4b60c6a81dcc https://www.encodeproject.org/files/ENCFF631EVW/@@download/ENCFF631EVW.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF645XMJ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF597EPU 8821390 ENCODE Processing Pipeline 9a6b1c9a6a90c8fe342f00ef2b45d3d3 https://www.encodeproject.org/files/ENCFF645XMJ/@@download/ENCFF645XMJ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF647NWK bed narrowPeak optimal idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF287OUE, ENCFF547MET, ENCFF597EPU, ENCFF631EVW 330458 ENCODE Processing Pipeline 56a7e6ff11120dc6c5b99c2fd92932b7 https://www.encodeproject.org/files/ENCFF647NWK/@@download/ENCFF647NWK.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF657HFE bigWig fold change over control ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF317KQT, ENCFF555HBY, ENCFF623XLE, ENCFF745XER 269709391 ENCODE Processing Pipeline b7028589504fe5b7b409c068b7d9dc6c https://www.encodeproject.org/files/ENCFF657HFE/@@download/ENCFF657HFE.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF024PGB bigBed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF631EVW 4714388 ENCODE Processing Pipeline 3de26bdee007cd2a9343fde3812fe8ed https://www.encodeproject.org/files/ENCFF024PGB/@@download/ENCFF024PGB.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF400OMH bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF647NWK 617335 ENCODE Processing Pipeline e42327a2eeb1b5a53c37c089d5ed48b6 https://www.encodeproject.org/files/ENCFF400OMH/@@download/ENCFF400OMH.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF213SXQ bigWig signal p-value ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF317KQT, ENCFF555HBY, ENCFF745XER 341101612 ENCODE Processing Pipeline 411b5a93506d55b9cf2ad6a88efb5394 https://www.encodeproject.org/files/ENCFF213SXQ/@@download/ENCFF213SXQ.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF280INN bigBed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF287OUE 10383159 ENCODE Processing Pipeline 327ac66b1c93519e52d186a1f858063a https://www.encodeproject.org/files/ENCFF280INN/@@download/ENCFF280INN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF998RUD bigWig signal p-value ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF317KQT, ENCFF555HBY, ENCFF623XLE, ENCFF745XER 368526713 ENCODE Processing Pipeline 63bfaed5e3074dd58b1e8ecac29926ad https://www.encodeproject.org/files/ENCFF998RUD/@@download/ENCFF998RUD.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF677WAH bigWig fold change over control ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF623XLE, ENCFF745XER 116985969 ENCODE Processing Pipeline cef463169c6d20106440cb96610bb24d https://www.encodeproject.org/files/ENCFF677WAH/@@download/ENCFF677WAH.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF287OUE bed narrowPeak peaks and background as input for IDR ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF317KQT, ENCFF555HBY, ENCFF623XLE, ENCFF745XER 5207015 ENCODE Processing Pipeline 599fd4974439475ff9d4274788c43dad https://www.encodeproject.org/files/ENCFF287OUE/@@download/ENCFF287OUE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF650IKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF635DJY 575898 ENCODE Processing Pipeline 6c17b5928a6c43b14773ae058c495a34 https://www.encodeproject.org/files/ENCFF650IKN/@@download/ENCFF650IKN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF635DJY bed narrowPeak conservative idr thresholded peaks ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF287OUE, ENCFF547MET, ENCFF597EPU, ENCFF631EVW 298887 ENCODE Processing Pipeline 83733fa67b9e0d829c68268602e7e6bc https://www.encodeproject.org/files/ENCFF635DJY/@@download/ENCFF635DJY.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF001KFC bam alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KFS 2133331962 Bing Ren, UCSD 722b5b86d713da7b8669326cb2a9d673 https://www.encodeproject.org/files/ENCFF001KFC/@@download/ENCFF001KFC.bam mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFF bigBed broadPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWX 727971 Bing Ren, UCSD 31dc6ff36c9bddd1238c099e7a02a75c https://www.encodeproject.org/files/ENCFF001KFF/@@download/ENCFF001KFF.bigBed mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFH bigWig signal ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 47709109 Bing Ren, UCSD cbe14eb212134cc122d8b680499558b5 https://www.encodeproject.org/files/ENCFF001KFH/@@download/ENCFF001KFH.bigWig mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFI bam alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KFY 2302950405 Bing Ren, UCSD 22d7b2fc2f5b608b2ba13d5f86f847b4 https://www.encodeproject.org/files/ENCFF001KFI/@@download/ENCFF001KFI.bam mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFS fastq reads ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 2320639765 Bing Ren, UCSD ffb1562b631ab1861ef5223d78063a6b https://www.encodeproject.org/files/ENCFF001KFS/@@download/ENCFF001KFS.fastq.gz Illumina HiSeq 2000 /files/ENCFF071UWJ/ released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001KFY fastq reads ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 2525467616 Bing Ren, UCSD 91a461030172313573097f70b019ec4a https://www.encodeproject.org/files/ENCFF001KFY/@@download/ENCFF001KFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF659VUB/ released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF001XWX bed broadPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 454427 Bing Ren, UCSD d3cb9cf4f92a3d366b755707a255a22d https://www.encodeproject.org/files/ENCFF001XWX/@@download/ENCFF001XWX.bed.gz mm9 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth missing derived_from insufficient read depth, severe bottlenecking, poor library complexity ENCFF674XUZ bam unfiltered alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFY, ENCFF018NEO 1846794850 ENCODE Processing Pipeline cea69b24a80a327a8401e156652287d0 https://www.encodeproject.org/files/ENCFF674XUZ/@@download/ENCFF674XUZ.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF238AQR bam alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFY, ENCFF018NEO 391775734 ENCODE Processing Pipeline 1658a3619642bf17200e3db1bcf17267 https://www.encodeproject.org/files/ENCFF238AQR/@@download/ENCFF238AQR.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF407AYA bam alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFS, ENCFF018NEO 457249705 ENCODE Processing Pipeline e637b3fd0db6b0b0e1da86f29e140fe2 https://www.encodeproject.org/files/ENCFF407AYA/@@download/ENCFF407AYA.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF769GKY bam unfiltered alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFS, ENCFF018NEO 2166906610 ENCODE Processing Pipeline bae7d3c6a23a94e2afb10bc006c698d7 https://www.encodeproject.org/files/ENCFF769GKY/@@download/ENCFF769GKY.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF960QSW bed narrowPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF238AQR, ENCFF318EHA, ENCFF407AYA, ENCFF682ICT 1603496 ENCODE Processing Pipeline b7b67cc36fa07cb627461273a2af0f25 https://www.encodeproject.org/files/ENCFF960QSW/@@download/ENCFF960QSW.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF038WSJ bed narrowPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF238AQR, ENCFF318EHA, ENCFF682ICT 1721359 ENCODE Processing Pipeline 384be79df4cbfe1c09b452b50c7896bf https://www.encodeproject.org/files/ENCFF038WSJ/@@download/ENCFF038WSJ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF536KGN bigBed narrowPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF038WSJ 4917780 ENCODE Processing Pipeline a718eb34d3e601536263bbbf3f607a21 https://www.encodeproject.org/files/ENCFF536KGN/@@download/ENCFF536KGN.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF368YNN bigBed narrowPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF838ZBX 3231987 ENCODE Processing Pipeline 96c8eaed28010b093f6ecc800f5e818c https://www.encodeproject.org/files/ENCFF368YNN/@@download/ENCFF368YNN.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF838ZBX bed narrowPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF407AYA, ENCFF682ICT 1215858 ENCODE Processing Pipeline 70a4f1cf5405c060de0f765c6ad2f3c8 https://www.encodeproject.org/files/ENCFF838ZBX/@@download/ENCFF838ZBX.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF923KRG bigWig signal p-value ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF238AQR, ENCFF318EHA, ENCFF407AYA, ENCFF682ICT 394955512 ENCODE Processing Pipeline e7876ab8f7de5d618c143d825855d4e5 https://www.encodeproject.org/files/ENCFF923KRG/@@download/ENCFF923KRG.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF060TZM bigWig signal p-value ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF407AYA, ENCFF682ICT 389189163 ENCODE Processing Pipeline 50804bb7a2737b805add6cf34fede2d3 https://www.encodeproject.org/files/ENCFF060TZM/@@download/ENCFF060TZM.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF735CBX bigWig signal p-value ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF238AQR, ENCFF318EHA, ENCFF682ICT 340627177 ENCODE Processing Pipeline 7599fc336afdb3cc4b69d82933d9b370 https://www.encodeproject.org/files/ENCFF735CBX/@@download/ENCFF735CBX.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF114UWU bigBed narrowPeak peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF960QSW 4636453 ENCODE Processing Pipeline 2f542264e535a36fac2dbcec1fa6a77e https://www.encodeproject.org/files/ENCFF114UWU/@@download/ENCFF114UWU.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF676NQE bigWig fold change over control ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF318EHA, ENCFF407AYA, ENCFF682ICT 242841957 ENCODE Processing Pipeline 478659d11c9ee827d77595398f321b05 https://www.encodeproject.org/files/ENCFF676NQE/@@download/ENCFF676NQE.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF129HSJ bigWig fold change over control ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF238AQR, ENCFF318EHA, ENCFF682ICT 204243685 ENCODE Processing Pipeline d04ca43505a9006a0cc829b31ac9f7bc https://www.encodeproject.org/files/ENCFF129HSJ/@@download/ENCFF129HSJ.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF809IES bigWig fold change over control ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF238AQR, ENCFF318EHA, ENCFF407AYA, ENCFF682ICT 375845098 ENCODE Processing Pipeline c2d9f70e9b60ff0e2a1c56ce8191db56 https://www.encodeproject.org/files/ENCFF809IES/@@download/ENCFF809IES.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF487JDK bed narrowPeak replicated peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF038WSJ, ENCFF838ZBX, ENCFF960QSW 1298164 ENCODE Processing Pipeline dca52900afcd4afdcf26aae9d723f7ec https://www.encodeproject.org/files/ENCFF487JDK/@@download/ENCFF487JDK.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF667WED bigBed narrowPeak replicated peaks ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF487JDK 2767598 ENCODE Processing Pipeline ef89d9619d61f30bf0cb7de2f379636f https://www.encodeproject.org/files/ENCFF667WED/@@download/ENCFF667WED.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF263LNO fastq reads ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 50 single-ended 2245409598 Bing Ren, UCSD 2436454ea35c0d76fe515b960b60ea94 SRA:SRR3651491 https://www.encodeproject.org/files/ENCFF263LNO/@@download/ENCFF263LNO.fastq.gz Illumina HiSeq 2000 /files/ENCFF586JAL/ released inconsistent platforms ENCFF486AWC fastq reads ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 50 single-ended 2254852832 Bing Ren, UCSD aa26da301ebdd19f6c5501bb2c60c8d6 SRA:SRR3651492 https://www.encodeproject.org/files/ENCFF486AWC/@@download/ENCFF486AWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF890PHI/ released inconsistent platforms ENCFF698KVC bam alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF263LNO, ENCFF806TVZ 1278941311 ENCODE Processing Pipeline 179b1d3dd5d2dd5d9b85cd7a3c743414 https://www.encodeproject.org/files/ENCFF698KVC/@@download/ENCFF698KVC.bam mm10-minimal archived inconsistent platforms ENCFF238ESF bam alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF486AWC, ENCFF806TVZ 1272349616 ENCODE Processing Pipeline f9930f2293805efc55a2890c5efc5fb3 https://www.encodeproject.org/files/ENCFF238ESF/@@download/ENCFF238ESF.bam mm10-minimal archived inconsistent platforms ENCFF602KHJ bed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF238ESF, ENCFF493BXI 816049 ENCODE Processing Pipeline 0e6dc7c55d591af19c47cfc546107413 https://www.encodeproject.org/files/ENCFF602KHJ/@@download/ENCFF602KHJ.bed.gz mm10-minimal archived inconsistent platforms ENCFF045ILJ bed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF330HOT, ENCFF698KVC 893010 ENCODE Processing Pipeline 6c58c3facc1dcb97fef68fe66f99a8f6 https://www.encodeproject.org/files/ENCFF045ILJ/@@download/ENCFF045ILJ.bed.gz mm10-minimal archived inconsistent platforms ENCFF687LIV bed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF238ESF, ENCFF330HOT, ENCFF493BXI, ENCFF698KVC 1111314 ENCODE Processing Pipeline 336e6f55983a550a8776926eb133c03f https://www.encodeproject.org/files/ENCFF687LIV/@@download/ENCFF687LIV.bed.gz mm10-minimal archived inconsistent platforms ENCFF684SFG bigBed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF602KHJ 1830088 ENCODE Processing Pipeline 36b29ac20b4e7db884835d5ce7b4fce8 https://www.encodeproject.org/files/ENCFF684SFG/@@download/ENCFF684SFG.bigBed mm10-minimal archived inconsistent platforms ENCFF289KSK bigBed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF045ILJ 1955844 ENCODE Processing Pipeline 52361a5b335d7ac90bb817b7d7d6a4da https://www.encodeproject.org/files/ENCFF289KSK/@@download/ENCFF289KSK.bigBed mm10-minimal archived inconsistent platforms ENCFF808FTJ bigBed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF687LIV 2294063 ENCODE Processing Pipeline ebd6d5931bdcdd282a958f3c51c8ddc7 https://www.encodeproject.org/files/ENCFF808FTJ/@@download/ENCFF808FTJ.bigBed mm10-minimal archived inconsistent platforms ENCFF618UNI bigWig signal p-value ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF330HOT, ENCFF698KVC 563311721 ENCODE Processing Pipeline 91420cbc421fc279f5b05beef9cdbebf https://www.encodeproject.org/files/ENCFF618UNI/@@download/ENCFF618UNI.bigWig mm10-minimal archived inconsistent platforms ENCFF735NQW bigWig signal p-value ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF238ESF, ENCFF493BXI 524976157 ENCODE Processing Pipeline 91a24b9544f1231c17bf579056d05f8e https://www.encodeproject.org/files/ENCFF735NQW/@@download/ENCFF735NQW.bigWig mm10-minimal archived inconsistent platforms ENCFF491MMJ bigWig signal p-value ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF238ESF, ENCFF330HOT, ENCFF493BXI, ENCFF698KVC 794627493 ENCODE Processing Pipeline 33144e675f99eab25ceb3774632fea89 https://www.encodeproject.org/files/ENCFF491MMJ/@@download/ENCFF491MMJ.bigWig mm10-minimal archived inconsistent platforms ENCFF844PPK bigWig fold change over control ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF330HOT, ENCFF698KVC 500289865 ENCODE Processing Pipeline fd7884d10a1c58c119aca98bd2fc534c https://www.encodeproject.org/files/ENCFF844PPK/@@download/ENCFF844PPK.bigWig mm10-minimal archived inconsistent platforms ENCFF875WSP bigWig fold change over control ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF238ESF, ENCFF493BXI 512952344 ENCODE Processing Pipeline dcedf967dd2815462d29dc23cc021748 https://www.encodeproject.org/files/ENCFF875WSP/@@download/ENCFF875WSP.bigWig mm10-minimal archived inconsistent platforms ENCFF296RFX bigWig fold change over control ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF238ESF, ENCFF330HOT, ENCFF493BXI, ENCFF698KVC 921107204 ENCODE Processing Pipeline 7c3aa081242b3a59d68471719ff73b8b https://www.encodeproject.org/files/ENCFF296RFX/@@download/ENCFF296RFX.bigWig mm10-minimal archived inconsistent platforms ENCFF895TGJ bigBed narrowPeak replicated peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF400IML 911668 ENCODE Processing Pipeline 9d7e86bfed048e7b07ad0c3281c831d9 https://www.encodeproject.org/files/ENCFF895TGJ/@@download/ENCFF895TGJ.bigBed mm10-minimal archived inconsistent platforms ENCFF400IML bed narrowPeak replicated peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF045ILJ, ENCFF602KHJ, ENCFF687LIV 426684 ENCODE Processing Pipeline 4ee31862bdffdd6d0fc657a0dd5647eb https://www.encodeproject.org/files/ENCFF400IML/@@download/ENCFF400IML.bed.gz mm10-minimal archived inconsistent platforms ENCFF546CJP bam unfiltered alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF486AWC 2732640946 ENCODE Processing Pipeline 4e36ecf22e737dc5618e3e9673b0793d https://www.encodeproject.org/files/ENCFF546CJP/@@download/ENCFF546CJP.bam mm10 released inconsistent platforms ENCFF435PNS bam alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF486AWC 1271618739 ENCODE Processing Pipeline f14e5dd315b9da8d2a65afbcd6699c55 https://www.encodeproject.org/files/ENCFF435PNS/@@download/ENCFF435PNS.bam mm10 released inconsistent platforms ENCFF228OZL bam unfiltered alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF263LNO 2723441931 ENCODE Processing Pipeline 59ec911e3e5023b1ed407e10e01d9328 https://www.encodeproject.org/files/ENCFF228OZL/@@download/ENCFF228OZL.bam mm10 released inconsistent platforms ENCFF701UTA bam alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF263LNO 1278189803 ENCODE Processing Pipeline 06753870221f2e904b64623ca72d4bd9 https://www.encodeproject.org/files/ENCFF701UTA/@@download/ENCFF701UTA.bam mm10 released inconsistent platforms ENCFF070DUG bed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF279URC, ENCFF701UTA 887732 ENCODE Processing Pipeline a925eb772fdd19a0e3444fb705ddc688 https://www.encodeproject.org/files/ENCFF070DUG/@@download/ENCFF070DUG.bed.gz mm10 released inconsistent platforms ENCFF977IHB bed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF435PNS, ENCFF893IOJ 875261 ENCODE Processing Pipeline c3c46d771d0abe137685f837aa0d20ec https://www.encodeproject.org/files/ENCFF977IHB/@@download/ENCFF977IHB.bed.gz mm10 released inconsistent platforms ENCFF751AEW bigBed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF977IHB 1941957 ENCODE Processing Pipeline 4e7e10c3d65ba9da6b20bd3267341b33 https://www.encodeproject.org/files/ENCFF751AEW/@@download/ENCFF751AEW.bigBed mm10 released inconsistent platforms ENCFF970KFH bed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF279URC, ENCFF435PNS, ENCFF701UTA, ENCFF893IOJ 1112376 ENCODE Processing Pipeline c2352fb7eafc4258e10c7119e509d93b https://www.encodeproject.org/files/ENCFF970KFH/@@download/ENCFF970KFH.bed.gz mm10 released inconsistent platforms ENCFF856YYP bigBed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF070DUG 1956197 ENCODE Processing Pipeline 740d941730f5c5d04596ee68038ef7b2 https://www.encodeproject.org/files/ENCFF856YYP/@@download/ENCFF856YYP.bigBed mm10 released inconsistent platforms ENCFF515EDS bigBed narrowPeak peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF970KFH 2318253 ENCODE Processing Pipeline fa472fe2803cdf10a53fc811093947d4 https://www.encodeproject.org/files/ENCFF515EDS/@@download/ENCFF515EDS.bigBed mm10 released inconsistent platforms ENCFF613VVX bigWig signal p-value ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF279URC, ENCFF701UTA 533464460 ENCODE Processing Pipeline fc425e6ca05b8ec24fc1dd3beea2fe44 https://www.encodeproject.org/files/ENCFF613VVX/@@download/ENCFF613VVX.bigWig mm10 released inconsistent platforms ENCFF964KOU bigWig signal p-value ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF435PNS, ENCFF893IOJ 550472763 ENCODE Processing Pipeline 557ac73e5d4f6946ffb506ae2adef1eb https://www.encodeproject.org/files/ENCFF964KOU/@@download/ENCFF964KOU.bigWig mm10 released inconsistent platforms ENCFF039CIZ bigWig signal p-value ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF279URC, ENCFF435PNS, ENCFF701UTA, ENCFF893IOJ 1019713727 ENCODE Processing Pipeline b31661b3139988d27352f1b4e17993ac https://www.encodeproject.org/files/ENCFF039CIZ/@@download/ENCFF039CIZ.bigWig mm10 released inconsistent platforms ENCFF423LNX bigWig fold change over control ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF279URC, ENCFF701UTA 534886990 ENCODE Processing Pipeline 25ac2e539b64799e56073da2b06bb150 https://www.encodeproject.org/files/ENCFF423LNX/@@download/ENCFF423LNX.bigWig mm10 released inconsistent platforms ENCFF185TTN bigWig fold change over control ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF435PNS, ENCFF893IOJ 551878903 ENCODE Processing Pipeline 066918b693d7e0db6fff5322920b1987 https://www.encodeproject.org/files/ENCFF185TTN/@@download/ENCFF185TTN.bigWig mm10 released inconsistent platforms ENCFF421HSW bigWig fold change over control ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF279URC, ENCFF435PNS, ENCFF701UTA, ENCFF893IOJ 1060342237 ENCODE Processing Pipeline 10df72c756c64426c5021b5ce56c7f03 https://www.encodeproject.org/files/ENCFF421HSW/@@download/ENCFF421HSW.bigWig mm10 released inconsistent platforms ENCFF004JEQ bed narrowPeak replicated peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF070DUG, ENCFF970KFH, ENCFF977IHB 443270 ENCODE Processing Pipeline f78bbc659fcfb3cb8ad589df2d952e19 https://www.encodeproject.org/files/ENCFF004JEQ/@@download/ENCFF004JEQ.bed.gz mm10 released inconsistent platforms ENCFF150KPR bigBed narrowPeak replicated peaks ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF004JEQ 946863 ENCODE Processing Pipeline 08317a1ebd5e26a874254d65a4c2cc37 https://www.encodeproject.org/files/ENCFF150KPR/@@download/ENCFF150KPR.bigBed mm10 released inconsistent platforms ENCFF002AIM fastq reads ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1195865883 Bing Ren, UCSD ba2ce0c2b6801abbb82d9654148266d8 SRA:SRR3652205 https://www.encodeproject.org/files/ENCFF002AIM/@@download/ENCFF002AIM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQZ/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AIR fastq reads ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1243218167 Bing Ren, UCSD 7d3a8b6d37b7950d3062a9902f936145 SRA:SRR3652207 https://www.encodeproject.org/files/ENCFF002AIR/@@download/ENCFF002AIR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQV/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF301TLK fastq reads ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 2 50 single-ended 911136428 Bing Ren, UCSD 74631af8b3ef057729a4f95e7d7bd9c2 SRA:SRR3652208 https://www.encodeproject.org/files/ENCFF301TLK/@@download/ENCFF301TLK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQV/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF393IDV fastq reads ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 574090757 Bing Ren, UCSD 955322799bac3be1ffad22f198fe8f55 SRA:SRR3652206 https://www.encodeproject.org/files/ENCFF393IDV/@@download/ENCFF393IDV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQZ/ released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF973KNF bam alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AIR, ENCFF301TLK, ENCFF806TVZ 1092228337 ENCODE Processing Pipeline 60cb4d46040173b3210cbcdc803c5812 https://www.encodeproject.org/files/ENCFF973KNF/@@download/ENCFF973KNF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF218RNI bam alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AIM, ENCFF393IDV, ENCFF806TVZ 1492484242 ENCODE Processing Pipeline 1a0a1342cf83df2283516f174f0621cc https://www.encodeproject.org/files/ENCFF218RNI/@@download/ENCFF218RNI.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF368SQY bed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF218RNI, ENCFF238GCZ, ENCFF967HVB 2613524 ENCODE Processing Pipeline 27886b4d80bf4111f9231ff3a44d669a https://www.encodeproject.org/files/ENCFF368SQY/@@download/ENCFF368SQY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF139HKT bigBed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF121XZJ 6413931 ENCODE Processing Pipeline d71d4494a5f27627a3dbc6db463eceee https://www.encodeproject.org/files/ENCFF139HKT/@@download/ENCFF139HKT.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF127TTD bigWig signal p-value ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF218RNI, ENCFF238GCZ, ENCFF967HVB 574791834 ENCODE Processing Pipeline 0527af6799cc5f44ce873d6f843a37d2 https://www.encodeproject.org/files/ENCFF127TTD/@@download/ENCFF127TTD.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF938SHU bed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF967HVB, ENCFF973KNF 2925214 ENCODE Processing Pipeline 2d9e87011c0698dc050b52a0239b157a https://www.encodeproject.org/files/ENCFF938SHU/@@download/ENCFF938SHU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF121XZJ bed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF218RNI, ENCFF238GCZ, ENCFF967HVB, ENCFF973KNF 3004693 ENCODE Processing Pipeline 07cc66733317c7bad178bc4731091eb1 https://www.encodeproject.org/files/ENCFF121XZJ/@@download/ENCFF121XZJ.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF068AIA bigWig signal p-value ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF967HVB, ENCFF973KNF 339971708 ENCODE Processing Pipeline 6e022ab67f489dbc3b9d45c1c700b214 https://www.encodeproject.org/files/ENCFF068AIA/@@download/ENCFF068AIA.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF846NPZ bigBed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF368SQY 4338160 ENCODE Processing Pipeline 48cf9aa622c230435541684101fc0de8 https://www.encodeproject.org/files/ENCFF846NPZ/@@download/ENCFF846NPZ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF151KQD bigBed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF938SHU 5095205 ENCODE Processing Pipeline 3adeb445e2401730e90c3773053b3693 https://www.encodeproject.org/files/ENCFF151KQD/@@download/ENCFF151KQD.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF423PXF bigWig signal p-value ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF218RNI, ENCFF238GCZ, ENCFF967HVB, ENCFF973KNF 661779944 ENCODE Processing Pipeline 061f56c937ee3f007a7cc5dbdb3f4e3b https://www.encodeproject.org/files/ENCFF423PXF/@@download/ENCFF423PXF.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF710AEY bigWig fold change over control ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF218RNI, ENCFF238GCZ, ENCFF967HVB 566053777 ENCODE Processing Pipeline fdd6bce9c7bb3930d795967e641fa38a https://www.encodeproject.org/files/ENCFF710AEY/@@download/ENCFF710AEY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF585ALB bigWig fold change over control ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF218RNI, ENCFF238GCZ, ENCFF967HVB, ENCFF973KNF 812371088 ENCODE Processing Pipeline ae6c32c2a09ab8990acdafe2360f8f5b https://www.encodeproject.org/files/ENCFF585ALB/@@download/ENCFF585ALB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF512BDR bigWig fold change over control ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF967HVB, ENCFF973KNF 378813962 ENCODE Processing Pipeline 7fa72fd7e4cf127835daabdb187e1758 https://www.encodeproject.org/files/ENCFF512BDR/@@download/ENCFF512BDR.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF080YEI bigBed narrowPeak replicated peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF733GQI 3565886 ENCODE Processing Pipeline 800006f9992c3c099d06ee3b4b11686c https://www.encodeproject.org/files/ENCFF080YEI/@@download/ENCFF080YEI.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF733GQI bed narrowPeak replicated peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF121XZJ, ENCFF368SQY, ENCFF938SHU 1911596 ENCODE Processing Pipeline c3f97bd571042ba27cbc0dd43a93ac81 https://www.encodeproject.org/files/ENCFF733GQI/@@download/ENCFF733GQI.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF705CBC bam unfiltered alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIM, ENCFF018NEO, ENCFF393IDV 2083318855 ENCODE Processing Pipeline 796c036fef19218231d8e12c1913fdf0 https://www.encodeproject.org/files/ENCFF705CBC/@@download/ENCFF705CBC.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF661XJJ bam unfiltered alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AIR, ENCFF018NEO, ENCFF301TLK 2340871786 ENCODE Processing Pipeline a9ec3bd580d25a57f599977bd9bad633 https://www.encodeproject.org/files/ENCFF661XJJ/@@download/ENCFF661XJJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF258ATT bam alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIM, ENCFF018NEO, ENCFF393IDV 1492139964 ENCODE Processing Pipeline 61eaeafaa1400c522f6fe3db9109f125 https://www.encodeproject.org/files/ENCFF258ATT/@@download/ENCFF258ATT.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF645UXS bam alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AIR, ENCFF018NEO, ENCFF301TLK 1091939835 ENCODE Processing Pipeline e6570d1da7cf61539ff4d250592880ad https://www.encodeproject.org/files/ENCFF645UXS/@@download/ENCFF645UXS.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF864SQI bed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF258ATT, ENCFF331CEU, ENCFF508LNS, ENCFF645UXS 2991697 ENCODE Processing Pipeline f3d56a583211415ad7aa874f17d613a8 https://www.encodeproject.org/files/ENCFF864SQI/@@download/ENCFF864SQI.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF386YYV bed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF258ATT, ENCFF331CEU, ENCFF508LNS 2289951 ENCODE Processing Pipeline e81f595ef61b0d1f25a61d670e78998d https://www.encodeproject.org/files/ENCFF386YYV/@@download/ENCFF386YYV.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF957EGJ bed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF508LNS, ENCFF645UXS 2924988 ENCODE Processing Pipeline ae22918b23edf79af3d5654c90bb3a64 https://www.encodeproject.org/files/ENCFF957EGJ/@@download/ENCFF957EGJ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF875FCF bigBed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF386YYV 5056380 ENCODE Processing Pipeline 1ce8d78fc90a5841d4fe48d5e2e34d54 https://www.encodeproject.org/files/ENCFF875FCF/@@download/ENCFF875FCF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF922GKR bigBed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF957EGJ 5096171 ENCODE Processing Pipeline 70f67c0debd858be7ca47c7710d1e8ce https://www.encodeproject.org/files/ENCFF922GKR/@@download/ENCFF922GKR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF012KSA bigBed narrowPeak peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF864SQI 6388880 ENCODE Processing Pipeline 763a097b3136758fccf2027f246fd0b5 https://www.encodeproject.org/files/ENCFF012KSA/@@download/ENCFF012KSA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF578RAA bigWig signal p-value ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF258ATT, ENCFF331CEU, ENCFF508LNS 613387220 ENCODE Processing Pipeline cd6a0e88f7296e6064aa67c21a0828b3 https://www.encodeproject.org/files/ENCFF578RAA/@@download/ENCFF578RAA.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF879IIQ bigWig signal p-value ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF508LNS, ENCFF645UXS 456206996 ENCODE Processing Pipeline 9f098eed68df78326a2476557b6bc37d https://www.encodeproject.org/files/ENCFF879IIQ/@@download/ENCFF879IIQ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF059FWV bigWig signal p-value ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF258ATT, ENCFF331CEU, ENCFF508LNS, ENCFF645UXS 749921374 ENCODE Processing Pipeline de1b08437bf8a2289c9601eb357a7a8e https://www.encodeproject.org/files/ENCFF059FWV/@@download/ENCFF059FWV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF738LMN bigWig fold change over control ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF258ATT, ENCFF331CEU, ENCFF508LNS 601706135 ENCODE Processing Pipeline e34afe0520f09c1e0f2336925c8e3817 https://www.encodeproject.org/files/ENCFF738LMN/@@download/ENCFF738LMN.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF649QRG bigWig fold change over control ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF508LNS, ENCFF645UXS 377555930 ENCODE Processing Pipeline ff12cd779277a36ca8a9344220d23203 https://www.encodeproject.org/files/ENCFF649QRG/@@download/ENCFF649QRG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF085HHF bigWig fold change over control ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF258ATT, ENCFF331CEU, ENCFF508LNS, ENCFF645UXS 792666620 ENCODE Processing Pipeline 4275f74cfc2e217b2557e3c1b6651789 https://www.encodeproject.org/files/ENCFF085HHF/@@download/ENCFF085HHF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF605GKN bed narrowPeak replicated peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF386YYV, ENCFF864SQI, ENCFF957EGJ 1850095 ENCODE Processing Pipeline 93a3d51f96752fdd77325bbf635bf8c9 https://www.encodeproject.org/files/ENCFF605GKN/@@download/ENCFF605GKN.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF217KAZ bigBed narrowPeak replicated peaks ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF605GKN 3465819 ENCODE Processing Pipeline c111847504f827f45a9a63daa096dadf https://www.encodeproject.org/files/ENCFF217KAZ/@@download/ENCFF217KAZ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001KRP bam alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KRZ 306872342 Bing Ren, UCSD 0927a9bb861040a9be9381c6e767c351 https://www.encodeproject.org/files/ENCFF001KRP/@@download/ENCFF001KRP.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KRQ bam alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KSE 426695651 Bing Ren, UCSD 89f85b0a9334b7cfb513d53a10c65552 https://www.encodeproject.org/files/ENCFF001KRQ/@@download/ENCFF001KRQ.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KRR bigBed broadPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYQ 684403 Bing Ren, UCSD ae3197be7cb901d08ac95561f71372d8 https://www.encodeproject.org/files/ENCFF001KRR/@@download/ENCFF001KRR.bigBed mm9 released low read length, low read depth insufficient read depth ENCFF001KRV bigWig signal ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KRP, ENCFF001KRQ 70498451 Bing Ren, UCSD ca2296582f121418a0d307545491700f https://www.encodeproject.org/files/ENCFF001KRV/@@download/ENCFF001KRV.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KRZ fastq reads ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 354108002 Bing Ren, UCSD 0c6d65262228b8b82f494eccfe5589d5 https://www.encodeproject.org/files/ENCFF001KRZ/@@download/ENCFF001KRZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSH/ released low read length, low read depth insufficient read depth ENCFF001KSE fastq reads ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 505456702 Bing Ren, UCSD 2531cc043b1e5e268f042bd6c81b9938 https://www.encodeproject.org/files/ENCFF001KSE/@@download/ENCFF001KSE.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KSJ/ released low read length, low read depth insufficient read depth ENCFF001XYQ bed broadPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KRP, ENCFF001KRQ 420862 Bing Ren, UCSD f1f52ce50de63df292a601671fffb27b https://www.encodeproject.org/files/ENCFF001XYQ/@@download/ENCFF001XYQ.bed.gz mm9 released low read length, low read depth insufficient read depth ENCFF897SZW bam unfiltered alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSE, ENCFF018NEO 580066680 ENCODE Processing Pipeline cc976d18af77019ecf2d0ae46e116dd4 https://www.encodeproject.org/files/ENCFF897SZW/@@download/ENCFF897SZW.bam mm10 released low read length, low read depth insufficient read depth ENCFF872XMW bam unfiltered alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRZ, ENCFF018NEO 410909716 ENCODE Processing Pipeline 0e4012ca223d4e996d0830f78fdd4df1 https://www.encodeproject.org/files/ENCFF872XMW/@@download/ENCFF872XMW.bam mm10 released low read length, low read depth insufficient read depth ENCFF419UVS bam alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRZ, ENCFF018NEO 310675894 ENCODE Processing Pipeline 9b9d5965e0e490145a8a565967557561 https://www.encodeproject.org/files/ENCFF419UVS/@@download/ENCFF419UVS.bam mm10 released low read length, low read depth insufficient read depth ENCFF615AOI bam alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSE, ENCFF018NEO 427070568 ENCODE Processing Pipeline 0c0dc4ffe4e2aa3b722d119d4e3e1e08 https://www.encodeproject.org/files/ENCFF615AOI/@@download/ENCFF615AOI.bam mm10 released low read length, low read depth insufficient read depth ENCFF115WZX bed narrowPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF371CWA, ENCFF419UVS, ENCFF543ZOX 1427600 ENCODE Processing Pipeline fe6f70138415b838a90a1d8e7cc7c986 https://www.encodeproject.org/files/ENCFF115WZX/@@download/ENCFF115WZX.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF869KFI bed narrowPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF543ZOX, ENCFF615AOI 1562553 ENCODE Processing Pipeline 9c102c4356c522e3f99921324d67ced8 https://www.encodeproject.org/files/ENCFF869KFI/@@download/ENCFF869KFI.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF006OWV bed narrowPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF371CWA, ENCFF419UVS, ENCFF543ZOX, ENCFF615AOI 1856844 ENCODE Processing Pipeline 47b4476bc9fd91f388df3add972041bd https://www.encodeproject.org/files/ENCFF006OWV/@@download/ENCFF006OWV.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF954ASK bigBed narrowPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF115WZX 4202558 ENCODE Processing Pipeline 0d0e6c5e7884a46f6417f4f984beda98 https://www.encodeproject.org/files/ENCFF954ASK/@@download/ENCFF954ASK.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF124DWP bigWig signal p-value ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF371CWA, ENCFF419UVS, ENCFF543ZOX 310224194 ENCODE Processing Pipeline a759ca18df704d7fde64ae42810e29ef https://www.encodeproject.org/files/ENCFF124DWP/@@download/ENCFF124DWP.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF376WVF bigBed narrowPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF869KFI 4502727 ENCODE Processing Pipeline 1cc54ecc23cd413cc66806747a790545 https://www.encodeproject.org/files/ENCFF376WVF/@@download/ENCFF376WVF.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF072QZB bigBed narrowPeak peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF006OWV 5239919 ENCODE Processing Pipeline e60ab1b90395112a7d64ed19ffa41c26 https://www.encodeproject.org/files/ENCFF072QZB/@@download/ENCFF072QZB.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF853VNK bigWig signal p-value ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF371CWA, ENCFF419UVS, ENCFF543ZOX, ENCFF615AOI 365956359 ENCODE Processing Pipeline 971a5403c5b9011c8c600c06fc24cefa https://www.encodeproject.org/files/ENCFF853VNK/@@download/ENCFF853VNK.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF328ZOI bigWig fold change over control ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF371CWA, ENCFF419UVS, ENCFF543ZOX 218782135 ENCODE Processing Pipeline 690ade1ad67a0fe23f5857ea0027cc45 https://www.encodeproject.org/files/ENCFF328ZOI/@@download/ENCFF328ZOI.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF467GFP bigWig signal p-value ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF543ZOX, ENCFF615AOI 305572679 ENCODE Processing Pipeline fcd5a873852afb0bc7f1263ffc5166b7 https://www.encodeproject.org/files/ENCFF467GFP/@@download/ENCFF467GFP.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF323BPW bigWig fold change over control ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF371CWA, ENCFF543ZOX, ENCFF615AOI 260130512 ENCODE Processing Pipeline 1cf2856bfd29a97d533fd6c7a4461c5a https://www.encodeproject.org/files/ENCFF323BPW/@@download/ENCFF323BPW.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF669DNL bigWig fold change over control ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF371CWA, ENCFF419UVS, ENCFF543ZOX, ENCFF615AOI 386724899 ENCODE Processing Pipeline fda26620245e52d70d73cfeaed743d95 https://www.encodeproject.org/files/ENCFF669DNL/@@download/ENCFF669DNL.bigWig mm10 released low read length, low read depth insufficient read depth ENCFF030NXW bed narrowPeak replicated peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF006OWV, ENCFF115WZX, ENCFF869KFI 1488898 ENCODE Processing Pipeline 839f355fab0ad596c74d1575504e06bb https://www.encodeproject.org/files/ENCFF030NXW/@@download/ENCFF030NXW.bed.gz mm10 released low read length, low read depth insufficient read depth ENCFF651FKI bigBed narrowPeak replicated peaks ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF030NXW 3202387 ENCODE Processing Pipeline 3e76cbd50e128a07adaa145cc7d45170 https://www.encodeproject.org/files/ENCFF651FKI/@@download/ENCFF651FKI.bigBed mm10 released low read length, low read depth insufficient read depth ENCFF001MQN bam alignments ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRP 1494533206 Ross Hardison, PennState 9ad6e809aa9b49722c16633bc3ccf337 https://www.encodeproject.org/files/ENCFF001MQN/@@download/ENCFF001MQN.bam mm9 released low read length insufficient read depth for broad peaks control ENCFF001MRD bigWig signal ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 2407375452 Ross Hardison, PennState 4df9d8ccc5210e9295a23cbcfdca705d https://www.encodeproject.org/files/ENCFF001MRD/@@download/ENCFF001MRD.bigWig mm9 released low read length missing derived_from, insufficient read depth for broad peaks control ENCFF001MRP fastq reads ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 48 single-ended 1216983014 Ross Hardison, PennState 8496177964640352663cacdbb3681e70 https://www.encodeproject.org/files/ENCFF001MRP/@@download/ENCFF001MRP.fastq.gz Illumina HiSeq 2000 released low read length insufficient read depth for broad peaks control ENCFF502BXA bam unfiltered alignments ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRP, ENCFF806TVZ 1571654363 J. Michael Cherry, Stanford e9cbe097280454580b64d00da05721c1 https://www.encodeproject.org/files/ENCFF502BXA/@@download/ENCFF502BXA.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF713HVS bam alignments ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MRP, ENCFF806TVZ 1154604299 J. Michael Cherry, Stanford 21f1e4e34a13e82262ece1565a55ec2f https://www.encodeproject.org/files/ENCFF713HVS/@@download/ENCFF713HVS.bam mm10-minimal archived low read length insufficient read depth for broad peaks control ENCFF069HPK bam unfiltered alignments ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRP, ENCFF018NEO 1439152303 ENCODE Processing Pipeline 9158a8596214654abdbb055338b109c3 https://www.encodeproject.org/files/ENCFF069HPK/@@download/ENCFF069HPK.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF538SNE bam alignments ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRP, ENCFF018NEO 1042803244 ENCODE Processing Pipeline 76f28cabc258215dd9b857c4931b7900 https://www.encodeproject.org/files/ENCFF538SNE/@@download/ENCFF538SNE.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF002BVP fastq reads ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 2 36 single-ended 943046989 Bing Ren, UCSD 56fc390dbff967f51fdab7e30d4523f4 SRA:SRR3653119 https://www.encodeproject.org/files/ENCFF002BVP/@@download/ENCFF002BVP.fastq.gz Illumina HiSeq 4000 /files/ENCFF001ZUU/ released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVT fastq reads ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 1 36 single-ended 1542964302 Bing Ren, UCSD 57ad63ab1027a092210a833462b3612e SRA:SRR3653117 https://www.encodeproject.org/files/ENCFF002BVT/@@download/ENCFF002BVT.fastq.gz Illumina HiSeq 4000 /files/ENCFF001ZUT/ released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF002BVV fastq reads ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 1 36 single-ended 1463215336 Bing Ren, UCSD cde7e765d4cec5c8ef22644804940152 SRA:SRR3653120 https://www.encodeproject.org/files/ENCFF002BVV/@@download/ENCFF002BVV.fastq.gz Illumina HiSeq 4000 /files/ENCFF001ZUU/ released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF366TMS bam alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF002BVP, ENCFF002BVV, ENCFF806TVZ 1254891969 ENCODE Processing Pipeline 8a4459c0e8f7db273adc0c42e43b5b9b https://www.encodeproject.org/files/ENCFF366TMS/@@download/ENCFF366TMS.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF143EVD bam alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF002BVT, ENCFF806TVZ 934602382 ENCODE Processing Pipeline 2292528d2fedc9299f8020b3675f4977 https://www.encodeproject.org/files/ENCFF143EVD/@@download/ENCFF143EVD.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF565DIZ bed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF143EVD, ENCFF807GND, ENCFF841RBB 463863 ENCODE Processing Pipeline b229a3a726fed1c74769c9cbd2e88f7b https://www.encodeproject.org/files/ENCFF565DIZ/@@download/ENCFF565DIZ.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF171VQU bigBed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF565DIZ 929718 ENCODE Processing Pipeline fc775f74eb849eee6828f2cd9d203e6d https://www.encodeproject.org/files/ENCFF171VQU/@@download/ENCFF171VQU.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF422YWM bed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF366TMS, ENCFF807GND, ENCFF841RBB 491178 ENCODE Processing Pipeline 7a2110dc3c62d5a16bf7ffa10dc3e1d3 https://www.encodeproject.org/files/ENCFF422YWM/@@download/ENCFF422YWM.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF191VDC bigBed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF422YWM 952196 ENCODE Processing Pipeline b0518cda3d6c8f9a5572b670dac20b7a https://www.encodeproject.org/files/ENCFF191VDC/@@download/ENCFF191VDC.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF278KTQ bed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF143EVD, ENCFF366TMS, ENCFF807GND, ENCFF841RBB 286659 ENCODE Processing Pipeline b436be0f9f701fb5a2bcd7b83f866c93 https://www.encodeproject.org/files/ENCFF278KTQ/@@download/ENCFF278KTQ.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF715OZE bigWig signal p-value ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF143EVD, ENCFF807GND, ENCFF841RBB 402761448 ENCODE Processing Pipeline 71db94e73a55bec803c98d4ebd84fe99 https://www.encodeproject.org/files/ENCFF715OZE/@@download/ENCFF715OZE.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF060XPH bigBed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF278KTQ 600861 ENCODE Processing Pipeline 5f49f5e5e1d27768ea47f2c1d533e4ad https://www.encodeproject.org/files/ENCFF060XPH/@@download/ENCFF060XPH.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF490OWY bigWig signal p-value ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF143EVD, ENCFF366TMS, ENCFF807GND, ENCFF841RBB 528174160 ENCODE Processing Pipeline 8760c6504fd41ad51349ece824285d8c https://www.encodeproject.org/files/ENCFF490OWY/@@download/ENCFF490OWY.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF381NOQ bigWig signal p-value ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF366TMS, ENCFF807GND, ENCFF841RBB 541069546 ENCODE Processing Pipeline 70328d591648411fbf47033d27c57e48 https://www.encodeproject.org/files/ENCFF381NOQ/@@download/ENCFF381NOQ.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF066YZE bigWig fold change over control ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF143EVD, ENCFF807GND, ENCFF841RBB 439208613 ENCODE Processing Pipeline 279de8ce77d6ad31e3b4a0eec0f2746c https://www.encodeproject.org/files/ENCFF066YZE/@@download/ENCFF066YZE.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF037QEC bigWig fold change over control ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF366TMS, ENCFF807GND, ENCFF841RBB 536649481 ENCODE Processing Pipeline d2de3e49a2210bc3fb074016a992e2a4 https://www.encodeproject.org/files/ENCFF037QEC/@@download/ENCFF037QEC.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF941ITG bigWig fold change over control ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF143EVD, ENCFF366TMS, ENCFF807GND, ENCFF841RBB 779461295 ENCODE Processing Pipeline acc68ac30dddbfec6b671f04f0a7ce36 https://www.encodeproject.org/files/ENCFF941ITG/@@download/ENCFF941ITG.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF468ASR bigBed narrowPeak replicated peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF905DKX 462830 ENCODE Processing Pipeline ed0e52ddd24df83ce3943d6924c7d904 https://www.encodeproject.org/files/ENCFF468ASR/@@download/ENCFF468ASR.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF905DKX bed narrowPeak replicated peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF278KTQ, ENCFF422YWM, ENCFF565DIZ 171717 ENCODE Processing Pipeline 81c029e582674be96d4fac15b1747008 https://www.encodeproject.org/files/ENCFF905DKX/@@download/ENCFF905DKX.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF799CNX fastq reads ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 2 50 single-ended 64152980 Bing Ren, UCSD 37c98b6719e0401d11ab45e22217bb7c SRA:SRR3653118 https://www.encodeproject.org/files/ENCFF799CNX/@@download/ENCFF799CNX.fastq.gz Illumina HiSeq 4000 /files/ENCFF001ZUT/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF884NIF bam unfiltered alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVT, ENCFF018NEO, ENCFF799CNX 2069835719 ENCODE Processing Pipeline 628f605306342b2b064c6fdf4b844f5c https://www.encodeproject.org/files/ENCFF884NIF/@@download/ENCFF884NIF.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF411IKP bam unfiltered alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVP, ENCFF002BVV, ENCFF018NEO 3023038920 ENCODE Processing Pipeline cf7b53275d1a88bb423e7ad52f841d72 https://www.encodeproject.org/files/ENCFF411IKP/@@download/ENCFF411IKP.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF705BZW bam alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVT, ENCFF018NEO, ENCFF799CNX 975222689 ENCODE Processing Pipeline 824a2e0c192e2ef080586f3a3a722728 https://www.encodeproject.org/files/ENCFF705BZW/@@download/ENCFF705BZW.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF613RIM bam alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVP, ENCFF002BVV, ENCFF018NEO 1254225409 ENCODE Processing Pipeline 2928d8f609d9d4ffd1726af2a9c66b20 https://www.encodeproject.org/files/ENCFF613RIM/@@download/ENCFF613RIM.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF531QJF bed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF010EXO, ENCFF705BZW, ENCFF804FRH 535183 ENCODE Processing Pipeline 465210ff92f2667721fcdac9ea29688b https://www.encodeproject.org/files/ENCFF531QJF/@@download/ENCFF531QJF.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF716YLQ bed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF613RIM, ENCFF804FRH 157620 ENCODE Processing Pipeline a0efcbd6a7fc483e558ecb306170c438 https://www.encodeproject.org/files/ENCFF716YLQ/@@download/ENCFF716YLQ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF122HOP bigBed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF531QJF 1042625 ENCODE Processing Pipeline 74c296e0cec647aec04820d5be51d852 https://www.encodeproject.org/files/ENCFF122HOP/@@download/ENCFF122HOP.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF386LSQ bed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF010EXO, ENCFF613RIM, ENCFF705BZW, ENCFF804FRH 188319 ENCODE Processing Pipeline ceb07864acd17be3f065497d2cd75e73 https://www.encodeproject.org/files/ENCFF386LSQ/@@download/ENCFF386LSQ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF944COH bigBed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF716YLQ 385727 ENCODE Processing Pipeline a7c3f9b9332e93504d6b28dd1ec84538 https://www.encodeproject.org/files/ENCFF944COH/@@download/ENCFF944COH.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF105KWS bigBed narrowPeak peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF386LSQ 532856 ENCODE Processing Pipeline 2f52b4a6cc0ea366636f95112be47371 https://www.encodeproject.org/files/ENCFF105KWS/@@download/ENCFF105KWS.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF762AMM bigWig signal p-value ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF010EXO, ENCFF705BZW, ENCFF804FRH 414566621 ENCODE Processing Pipeline 0de842a4704e6dfc170b7ab949557bf0 https://www.encodeproject.org/files/ENCFF762AMM/@@download/ENCFF762AMM.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF562FKQ bigWig signal p-value ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF613RIM, ENCFF804FRH 259264565 ENCODE Processing Pipeline a319500b2d86a63a12a71ee601f2fd0a https://www.encodeproject.org/files/ENCFF562FKQ/@@download/ENCFF562FKQ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF351ANX bigWig signal p-value ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF010EXO, ENCFF613RIM, ENCFF705BZW, ENCFF804FRH 524835421 ENCODE Processing Pipeline 654d34db852621971f38451265a312e8 https://www.encodeproject.org/files/ENCFF351ANX/@@download/ENCFF351ANX.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF816YDZ bigWig fold change over control ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 ENCFF010EXO, ENCFF705BZW, ENCFF804FRH 448256653 ENCODE Processing Pipeline 4d7af776e39d5ca78331e36ee175d0b1 https://www.encodeproject.org/files/ENCFF816YDZ/@@download/ENCFF816YDZ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF700OTQ bigWig fold change over control ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 ENCFF613RIM, ENCFF804FRH 420892718 ENCODE Processing Pipeline 3846614ba578e8a5074ea6df002c7c62 https://www.encodeproject.org/files/ENCFF700OTQ/@@download/ENCFF700OTQ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF477UFW bigWig fold change over control ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF010EXO, ENCFF613RIM, ENCFF705BZW, ENCFF804FRH 777417519 ENCODE Processing Pipeline 2875fbe60439ae1a0fcca7b28ed3af23 https://www.encodeproject.org/files/ENCFF477UFW/@@download/ENCFF477UFW.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF470CWQ bed narrowPeak replicated peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF386LSQ, ENCFF531QJF, ENCFF716YLQ 133109 ENCODE Processing Pipeline 76116a0d7277b9a1849529659cf4693f https://www.encodeproject.org/files/ENCFF470CWQ/@@download/ENCFF470CWQ.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF790QLV bigBed narrowPeak replicated peaks ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1, 2 ENCFF470CWQ 380248 ENCODE Processing Pipeline f461da693ebf38a526815914511034be https://www.encodeproject.org/files/ENCFF790QLV/@@download/ENCFF790QLV.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF001KNG bigBed broadPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYB 1258429 Bing Ren, UCSD 703276953a55ddc5f2ccf2e20c950468 https://www.encodeproject.org/files/ENCFF001KNG/@@download/ENCFF001KNG.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KNH bam alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KNP 928253863 Bing Ren, UCSD 8cf5a773a8ac6219cb20fcfd737e3379 https://www.encodeproject.org/files/ENCFF001KNH/@@download/ENCFF001KNH.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KNI bam alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KNQ 909165275 Bing Ren, UCSD 00506873d58ff181b2464656214e3cbb https://www.encodeproject.org/files/ENCFF001KNI/@@download/ENCFF001KNI.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KNJ bigWig signal ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KNH, ENCFF001KNI 66831137 Bing Ren, UCSD ee54c1af504f8dba6dfa8631168eb48f https://www.encodeproject.org/files/ENCFF001KNJ/@@download/ENCFF001KNJ.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KNP fastq reads ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 879959353 Bing Ren, UCSD b9ff69aefbe87a530ab2b593c58e6a13 https://www.encodeproject.org/files/ENCFF001KNP/@@download/ENCFF001KNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNX/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001KNQ fastq reads ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 892352002 Bing Ren, UCSD 3d3e0e4e42b0974c0dd4598fadbe49e3 https://www.encodeproject.org/files/ENCFF001KNQ/@@download/ENCFF001KNQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNY/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF001XYB bed broadPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KNH, ENCFF001KNI 827121 Bing Ren, UCSD 5974c872eb9cec267260b3a57cfa31d1 https://www.encodeproject.org/files/ENCFF001XYB/@@download/ENCFF001XYB.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF249ZIH bam unfiltered alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KNP, ENCFF018NEO 1002303336 ENCODE Processing Pipeline ddc0b32523453e0ae1d20adbc36817f5 https://www.encodeproject.org/files/ENCFF249ZIH/@@download/ENCFF249ZIH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF365OCB bam unfiltered alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KNQ, ENCFF018NEO 988700156 ENCODE Processing Pipeline 2761f823f2c1ea7b602f37abe86c3a4f https://www.encodeproject.org/files/ENCFF365OCB/@@download/ENCFF365OCB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF955KYL bam alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KNP, ENCFF018NEO 607073876 ENCODE Processing Pipeline f039368d183df2771b1c9e8f87e19f54 https://www.encodeproject.org/files/ENCFF955KYL/@@download/ENCFF955KYL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF754DMZ bam alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KNQ, ENCFF018NEO 550275996 ENCODE Processing Pipeline 49f1cff4c4bfeaa62c12aa6477874765 https://www.encodeproject.org/files/ENCFF754DMZ/@@download/ENCFF754DMZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF605NUV bed narrowPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF955KYL 3389259 ENCODE Processing Pipeline 83f8662fc263d4870b735ba9fd355076 https://www.encodeproject.org/files/ENCFF605NUV/@@download/ENCFF605NUV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF125AUN bed narrowPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF754DMZ 1688364 ENCODE Processing Pipeline 7aa45123a3316e2fef146d28120c6f12 https://www.encodeproject.org/files/ENCFF125AUN/@@download/ENCFF125AUN.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF697BKJ bed narrowPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF754DMZ, ENCFF955KYL 2105919 ENCODE Processing Pipeline 6378b8adb0dcc5a3bdf1cca6e8c18e75 https://www.encodeproject.org/files/ENCFF697BKJ/@@download/ENCFF697BKJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF440RLR bigBed narrowPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF125AUN 3684947 ENCODE Processing Pipeline 7d60122b625a1ad170456f0c168fa04c https://www.encodeproject.org/files/ENCFF440RLR/@@download/ENCFF440RLR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF772ZUZ bigBed narrowPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF605NUV 8699941 ENCODE Processing Pipeline b9dea468f2b1d0ebbc499da7bc9d0e01 https://www.encodeproject.org/files/ENCFF772ZUZ/@@download/ENCFF772ZUZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF670HSV bigBed narrowPeak peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF697BKJ 5587742 ENCODE Processing Pipeline f6f4e501d5e6b58586a01ee53346edf9 https://www.encodeproject.org/files/ENCFF670HSV/@@download/ENCFF670HSV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF854LGY bigWig signal p-value ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF955KYL 289843460 ENCODE Processing Pipeline 5de3d518b2594f29df13239b3e1e84f0 https://www.encodeproject.org/files/ENCFF854LGY/@@download/ENCFF854LGY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF055MHO bigWig signal p-value ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF754DMZ 286207633 ENCODE Processing Pipeline 5dae8214ec4c35342cab9f3fbf3bcf51 https://www.encodeproject.org/files/ENCFF055MHO/@@download/ENCFF055MHO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF302PAF bigWig signal p-value ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF754DMZ, ENCFF955KYL 417911807 ENCODE Processing Pipeline 31ed5e8ea4f1a4e416500683087c5f87 https://www.encodeproject.org/files/ENCFF302PAF/@@download/ENCFF302PAF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF497RGG bigWig fold change over control ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF955KYL 273517436 ENCODE Processing Pipeline cfd159634bc8e679eef8d057b84e0bdf https://www.encodeproject.org/files/ENCFF497RGG/@@download/ENCFF497RGG.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF883EOU bigWig fold change over control ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF754DMZ 268939895 ENCODE Processing Pipeline 004144fe1fd1e29ed901644625e30260 https://www.encodeproject.org/files/ENCFF883EOU/@@download/ENCFF883EOU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF157PQZ bigWig fold change over control ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF754DMZ, ENCFF955KYL 451293751 ENCODE Processing Pipeline f3b011bbb840de1a8ddbff5378781b00 https://www.encodeproject.org/files/ENCFF157PQZ/@@download/ENCFF157PQZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF306QLL bed narrowPeak replicated peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF125AUN, ENCFF605NUV, ENCFF697BKJ 1930163 ENCODE Processing Pipeline b9192a6297c52fb1c4e761feb7185292 https://www.encodeproject.org/files/ENCFF306QLL/@@download/ENCFF306QLL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF114CZI bigBed narrowPeak replicated peaks ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF306QLL 3151679 ENCODE Processing Pipeline f4d4c7115a1a0f292b7bb51898ad05d4 https://www.encodeproject.org/files/ENCFF114CZI/@@download/ENCFF114CZI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF002ALV fastq reads ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1116077779 Bing Ren, UCSD 6fb7b17f9570a3dc8329498010930885 SRA:SRR3651903 https://www.encodeproject.org/files/ENCFF002ALV/@@download/ENCFF002ALV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARC/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity ENCFF002AMB fastq reads ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1487993902 Bing Ren, UCSD d06a88f800242ee46bebdc4558b57277 SRA:SRR3651904 https://www.encodeproject.org/files/ENCFF002AMB/@@download/ENCFF002AMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARH/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF532DUF bam alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMB, ENCFF806TVZ 918519608 ENCODE Processing Pipeline 55c29e1b41cd6cebbafa8868a4bf5f73 https://www.encodeproject.org/files/ENCFF532DUF/@@download/ENCFF532DUF.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF789ZNZ bam alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALV, ENCFF806TVZ 744083167 ENCODE Processing Pipeline 1c45e1d5d6cc3661f106567a62feaa07 https://www.encodeproject.org/files/ENCFF789ZNZ/@@download/ENCFF789ZNZ.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF015MCF bed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF532DUF, ENCFF789ZNZ, ENCFF989KGL 933276 ENCODE Processing Pipeline 4c04804e0aa5a1ede2c5b05ce29b092c https://www.encodeproject.org/files/ENCFF015MCF/@@download/ENCFF015MCF.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF143EJE bed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF532DUF, ENCFF989KGL 922152 ENCODE Processing Pipeline c84fcf5fa0a1a0bfcfd254919be590b4 https://www.encodeproject.org/files/ENCFF143EJE/@@download/ENCFF143EJE.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF475NZR bigBed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015MCF 2943128 ENCODE Processing Pipeline b51ec2bc4d9e4aaed9e779abf5e0e6a3 https://www.encodeproject.org/files/ENCFF475NZR/@@download/ENCFF475NZR.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF658RHI bed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF789ZNZ, ENCFF989KGL 770304 ENCODE Processing Pipeline a4b5b7b5305ac22925e829a60e558747 https://www.encodeproject.org/files/ENCFF658RHI/@@download/ENCFF658RHI.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF719AVL bigBed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF658RHI 1960983 ENCODE Processing Pipeline b8d7fe657d3a50ab6e6255312f408dcc https://www.encodeproject.org/files/ENCFF719AVL/@@download/ENCFF719AVL.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF568ILG bigBed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF143EJE 2328226 ENCODE Processing Pipeline bba654d9558d301ad07eefe4e105d656 https://www.encodeproject.org/files/ENCFF568ILG/@@download/ENCFF568ILG.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF605PYG bigWig signal p-value ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF789ZNZ, ENCFF989KGL 375030482 ENCODE Processing Pipeline 4f77c8cb41a0a60b8281213755eac048 https://www.encodeproject.org/files/ENCFF605PYG/@@download/ENCFF605PYG.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF219ZMY bigWig signal p-value ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF532DUF, ENCFF989KGL 470493874 ENCODE Processing Pipeline 2eceb79d3bafb6d0d3885cc9ad3b0d2e https://www.encodeproject.org/files/ENCFF219ZMY/@@download/ENCFF219ZMY.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF125UGA bigWig signal p-value ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF532DUF, ENCFF789ZNZ, ENCFF989KGL 674902106 ENCODE Processing Pipeline 56a1c214d75f5ecd0592019827909cbb https://www.encodeproject.org/files/ENCFF125UGA/@@download/ENCFF125UGA.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF224GWN bigWig fold change over control ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF156ZPL, ENCFF789ZNZ, ENCFF989KGL 380577715 ENCODE Processing Pipeline 8f3f64e22f8461496a63e4c9f916999a https://www.encodeproject.org/files/ENCFF224GWN/@@download/ENCFF224GWN.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF077NXQ bigWig fold change over control ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF156ZPL, ENCFF532DUF, ENCFF789ZNZ, ENCFF989KGL 655693553 ENCODE Processing Pipeline 6028873d5b03dd0d537bbf84efcd325f https://www.encodeproject.org/files/ENCFF077NXQ/@@download/ENCFF077NXQ.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF883JFQ bigWig fold change over control ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF156ZPL, ENCFF532DUF, ENCFF989KGL 424260549 ENCODE Processing Pipeline c906c4d959836ec847ea2fc9944022c0 https://www.encodeproject.org/files/ENCFF883JFQ/@@download/ENCFF883JFQ.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF762MRJ bigBed narrowPeak replicated peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF564VFZ 2128310 ENCODE Processing Pipeline 53260ee2375764c687a93e1535286ab4 https://www.encodeproject.org/files/ENCFF762MRJ/@@download/ENCFF762MRJ.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF564VFZ bed narrowPeak replicated peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF015MCF, ENCFF143EJE, ENCFF658RHI 862044 ENCODE Processing Pipeline 3fee0cd5abb7004b0cb7272eb770c0ed https://www.encodeproject.org/files/ENCFF564VFZ/@@download/ENCFF564VFZ.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF596DGP bam unfiltered alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMB, ENCFF018NEO 1250969825 ENCODE Processing Pipeline 3947e9c3257aade7279830bc5b336c37 https://www.encodeproject.org/files/ENCFF596DGP/@@download/ENCFF596DGP.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF874CNY bam unfiltered alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALV, ENCFF018NEO 1154285321 ENCODE Processing Pipeline 6dd391064e7912e00b1dc0f63e7dceb2 https://www.encodeproject.org/files/ENCFF874CNY/@@download/ENCFF874CNY.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF369MZW bam alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALV, ENCFF018NEO 743944472 ENCODE Processing Pipeline 76dd66811996ba9ac282456ba44e298d https://www.encodeproject.org/files/ENCFF369MZW/@@download/ENCFF369MZW.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF637RHJ bam alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMB, ENCFF018NEO 719175472 ENCODE Processing Pipeline 195df1bac07deba7ee980c4ee936b6ae https://www.encodeproject.org/files/ENCFF637RHJ/@@download/ENCFF637RHJ.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF627FCG bed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF637RHJ, ENCFF782YCY, ENCFF922FWV 917961 ENCODE Processing Pipeline 0c4c760b3de26f163489eb7eda9a8851 https://www.encodeproject.org/files/ENCFF627FCG/@@download/ENCFF627FCG.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF638EEB bed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF369MZW, ENCFF782YCY, ENCFF922FWV 765379 ENCODE Processing Pipeline 612dc90aa9cb6a95401a6d32f83b5caa https://www.encodeproject.org/files/ENCFF638EEB/@@download/ENCFF638EEB.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF263YOS bed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF369MZW, ENCFF637RHJ, ENCFF782YCY, ENCFF922FWV 913796 ENCODE Processing Pipeline e275073ee5f92613048bca48dd76ba58 https://www.encodeproject.org/files/ENCFF263YOS/@@download/ENCFF263YOS.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF236PFJ bigBed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF638EEB 2481255 ENCODE Processing Pipeline a6737eac1b6a6616dac96a0efb6f1b93 https://www.encodeproject.org/files/ENCFF236PFJ/@@download/ENCFF236PFJ.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF842HSU bigBed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF263YOS 2892965 ENCODE Processing Pipeline aa2f76c6c8c87abc552862c22f6136e3 https://www.encodeproject.org/files/ENCFF842HSU/@@download/ENCFF842HSU.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF454NNQ bigBed narrowPeak peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF627FCG 2324329 ENCODE Processing Pipeline 359d510cec96bd58ee115d1da103c052 https://www.encodeproject.org/files/ENCFF454NNQ/@@download/ENCFF454NNQ.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF609COJ bigWig signal p-value ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF369MZW, ENCFF782YCY, ENCFF922FWV 450489350 ENCODE Processing Pipeline 161fe4a0b647697182428ee1f7a077bf https://www.encodeproject.org/files/ENCFF609COJ/@@download/ENCFF609COJ.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF864AHW bigWig signal p-value ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF637RHJ, ENCFF782YCY, ENCFF922FWV 497885312 ENCODE Processing Pipeline b4f7fc0ccb7e1cf167c4448703047d30 https://www.encodeproject.org/files/ENCFF864AHW/@@download/ENCFF864AHW.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF144JER bigWig signal p-value ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF369MZW, ENCFF637RHJ, ENCFF782YCY, ENCFF922FWV 632204157 ENCODE Processing Pipeline 4c54d163f72cf5d892e23c9bb26f3db2 https://www.encodeproject.org/files/ENCFF144JER/@@download/ENCFF144JER.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF341HQO bigWig fold change over control ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF369MZW, ENCFF782YCY, ENCFF922FWV 416717707 ENCODE Processing Pipeline 9d88d0d01d4ac3e2a804bd20279a558f https://www.encodeproject.org/files/ENCFF341HQO/@@download/ENCFF341HQO.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF930VXA bigWig fold change over control ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF637RHJ, ENCFF782YCY, ENCFF922FWV 407756289 ENCODE Processing Pipeline 6ac03d5007237866ac50692dbeea6a58 https://www.encodeproject.org/files/ENCFF930VXA/@@download/ENCFF930VXA.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF382IWW bigWig fold change over control ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF369MZW, ENCFF637RHJ, ENCFF782YCY, ENCFF922FWV 655785640 ENCODE Processing Pipeline d2d746db1d71193b176fe07d458fec56 https://www.encodeproject.org/files/ENCFF382IWW/@@download/ENCFF382IWW.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF740EWN bed narrowPeak replicated peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF263YOS, ENCFF627FCG, ENCFF638EEB 890811 ENCODE Processing Pipeline bfc3f1bb0ffa126eded2a40c904dbfe8 https://www.encodeproject.org/files/ENCFF740EWN/@@download/ENCFF740EWN.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF139FPW bigBed narrowPeak replicated peaks ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF740EWN 2178319 ENCODE Processing Pipeline 32e5ce638acdc53b2b1d84ae4b397d56 https://www.encodeproject.org/files/ENCFF139FPW/@@download/ENCFF139FPW.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002ALP fastq reads ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1476754427 Bing Ren, UCSD b99b0a52bd56c68f845a7ace863108f4 SRA:SRR3651869 https://www.encodeproject.org/files/ENCFF002ALP/@@download/ENCFF002ALP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQV/ released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF002ALT fastq reads ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1512477500 Bing Ren, UCSD 33a9ad4b8b25e4b314a8d1ab435ea03a SRA:SRR3651868 https://www.encodeproject.org/files/ENCFF002ALT/@@download/ENCFF002ALT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQZ/ released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF806IXG bam alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALP, ENCFF806TVZ 625054835 ENCODE Processing Pipeline 510908647d936ca1dcabb30219eb4b26 https://www.encodeproject.org/files/ENCFF806IXG/@@download/ENCFF806IXG.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF087LZG bam alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALT, ENCFF806TVZ 984000854 ENCODE Processing Pipeline 081b418609f438453a7674b8b5d369d0 https://www.encodeproject.org/files/ENCFF087LZG/@@download/ENCFF087LZG.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF373XRF bigBed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF043SHY 2268518 ENCODE Processing Pipeline 2ca2fbf19253bccfedb642efa5bf0249 https://www.encodeproject.org/files/ENCFF373XRF/@@download/ENCFF373XRF.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF193PIB bigBed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF464UJY 3213162 ENCODE Processing Pipeline d4ce4a78403cb4871a6691f5f3edc7a2 https://www.encodeproject.org/files/ENCFF193PIB/@@download/ENCFF193PIB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF261WSQ bigBed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF551RXG 2629752 ENCODE Processing Pipeline f022f61af18d4723b40d14fccd53a1d0 https://www.encodeproject.org/files/ENCFF261WSQ/@@download/ENCFF261WSQ.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF043SHY bed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF087LZG, ENCFF238GCZ 940107 ENCODE Processing Pipeline b51ee1d86544f795047ee07693b2e5f2 https://www.encodeproject.org/files/ENCFF043SHY/@@download/ENCFF043SHY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF706YYS bigWig signal p-value ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF087LZG, ENCFF238GCZ 319922757 ENCODE Processing Pipeline 8aaf8b7f800d377ed26db9b1b317902a https://www.encodeproject.org/files/ENCFF706YYS/@@download/ENCFF706YYS.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF551RXG bed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806IXG, ENCFF967HVB 1095006 ENCODE Processing Pipeline 70e8e71b613cb9dec7bd8ba2655fada1 https://www.encodeproject.org/files/ENCFF551RXG/@@download/ENCFF551RXG.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF464UJY bed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087LZG, ENCFF238GCZ, ENCFF806IXG, ENCFF967HVB 1060073 ENCODE Processing Pipeline 0c3a8c4b98005a48d468062eb37ed29a https://www.encodeproject.org/files/ENCFF464UJY/@@download/ENCFF464UJY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF033MMP bigWig signal p-value ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806IXG, ENCFF967HVB 279212323 ENCODE Processing Pipeline 50e2e922b9d62a4ba91e7c44e64c05bf https://www.encodeproject.org/files/ENCFF033MMP/@@download/ENCFF033MMP.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF704SSY bigWig fold change over control ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF806IXG, ENCFF967HVB 220145302 ENCODE Processing Pipeline ee7779edc794f08de615cd581fed60a9 https://www.encodeproject.org/files/ENCFF704SSY/@@download/ENCFF704SSY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF485MMO bigWig signal p-value ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087LZG, ENCFF238GCZ, ENCFF806IXG, ENCFF967HVB 507282793 ENCODE Processing Pipeline f1c09cdbfa56fcb265c3ac3e8d827395 https://www.encodeproject.org/files/ENCFF485MMO/@@download/ENCFF485MMO.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF328VHC bigWig fold change over control ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF087LZG, ENCFF238GCZ 311445753 ENCODE Processing Pipeline a39621a47e11cb49b5d2417e4c316300 https://www.encodeproject.org/files/ENCFF328VHC/@@download/ENCFF328VHC.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF533AEV bigBed narrowPeak replicated peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF650RQN 2405838 ENCODE Processing Pipeline 30f01a987a29555609e130eecce10aeb https://www.encodeproject.org/files/ENCFF533AEV/@@download/ENCFF533AEV.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF274DCB bigWig fold change over control ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087LZG, ENCFF238GCZ, ENCFF806IXG, ENCFF967HVB 533771314 ENCODE Processing Pipeline 7ce58ec4367ee5075cc6f0854f0c0869 https://www.encodeproject.org/files/ENCFF274DCB/@@download/ENCFF274DCB.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF650RQN bed narrowPeak replicated peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF043SHY, ENCFF464UJY, ENCFF551RXG 1016683 ENCODE Processing Pipeline 37169d5433dffcd625c8c19c27be5d4b https://www.encodeproject.org/files/ENCFF650RQN/@@download/ENCFF650RQN.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF153IGB bam unfiltered alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALT, ENCFF018NEO 1571044383 ENCODE Processing Pipeline f54a76dab38b06be5b8d3cfad846fed9 https://www.encodeproject.org/files/ENCFF153IGB/@@download/ENCFF153IGB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF129GGN bam unfiltered alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALP, ENCFF018NEO 1386134336 ENCODE Processing Pipeline cdc84bfe41fbc5b9a5e9996313dd0b4a https://www.encodeproject.org/files/ENCFF129GGN/@@download/ENCFF129GGN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF289RMU bam alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALP, ENCFF018NEO 624973214 ENCODE Processing Pipeline 604b633daaceef21f8dc9bbb2507d1b9 https://www.encodeproject.org/files/ENCFF289RMU/@@download/ENCFF289RMU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF909LEP bam alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALT, ENCFF018NEO 983875650 ENCODE Processing Pipeline 4838ad714497a58397d5b5548e17861c https://www.encodeproject.org/files/ENCFF909LEP/@@download/ENCFF909LEP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF673OQE bed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF331CEU, ENCFF909LEP 941273 ENCODE Processing Pipeline 9136ea6d1af12a7818ff93c33b988953 https://www.encodeproject.org/files/ENCFF673OQE/@@download/ENCFF673OQE.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF937YDT bed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF289RMU, ENCFF331CEU, ENCFF508LNS, ENCFF909LEP 1056311 ENCODE Processing Pipeline 522d48f1e9a5f63804d440370338ee9b https://www.encodeproject.org/files/ENCFF937YDT/@@download/ENCFF937YDT.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF888SMW bed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF289RMU, ENCFF508LNS 1095501 ENCODE Processing Pipeline 17981dc4e87ad56971be1049a1a3d765 https://www.encodeproject.org/files/ENCFF888SMW/@@download/ENCFF888SMW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF801LMF bigBed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF673OQE 2269956 ENCODE Processing Pipeline 21fe7214837cb1cd51b334d2bab03fe3 https://www.encodeproject.org/files/ENCFF801LMF/@@download/ENCFF801LMF.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF028HYD bigBed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF888SMW 2630932 ENCODE Processing Pipeline ca130f46b1021d51dee1f759952fc2dc https://www.encodeproject.org/files/ENCFF028HYD/@@download/ENCFF028HYD.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF770SAA bigBed narrowPeak peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF937YDT 3212125 ENCODE Processing Pipeline 708d3544b1ac963a07a964f9a4575d99 https://www.encodeproject.org/files/ENCFF770SAA/@@download/ENCFF770SAA.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF761INB bigWig signal p-value ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF331CEU, ENCFF909LEP 303363016 ENCODE Processing Pipeline 4ac9e2a1b2c0f8816aead81981516907 https://www.encodeproject.org/files/ENCFF761INB/@@download/ENCFF761INB.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF113DEF bigWig signal p-value ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF289RMU, ENCFF508LNS 297106836 ENCODE Processing Pipeline a51168e61c6758885f34da1f1dd21c8e https://www.encodeproject.org/files/ENCFF113DEF/@@download/ENCFF113DEF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF141ZST bigWig signal p-value ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF289RMU, ENCFF331CEU, ENCFF508LNS, ENCFF909LEP 489730196 ENCODE Processing Pipeline bab7c05da2822e047e391e90471fe2b1 https://www.encodeproject.org/files/ENCFF141ZST/@@download/ENCFF141ZST.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF918ILM bigWig fold change over control ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF331CEU, ENCFF909LEP 311453382 ENCODE Processing Pipeline 2c9cde366fe69ed1510b9efa3a9af8c3 https://www.encodeproject.org/files/ENCFF918ILM/@@download/ENCFF918ILM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF269JOF bigWig fold change over control ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF289RMU, ENCFF508LNS 219688438 ENCODE Processing Pipeline 0dda4e9f50e1311aeffdf4177221782c https://www.encodeproject.org/files/ENCFF269JOF/@@download/ENCFF269JOF.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF877BSP bigWig fold change over control ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF289RMU, ENCFF331CEU, ENCFF508LNS, ENCFF909LEP 550314868 ENCODE Processing Pipeline 430ca31a4470a1f4f085d13c3bff5ea7 https://www.encodeproject.org/files/ENCFF877BSP/@@download/ENCFF877BSP.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF871SED bed narrowPeak replicated peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF673OQE, ENCFF888SMW, ENCFF937YDT 1013289 ENCODE Processing Pipeline 040513bcee2406c718a7aaf5af020ce6 https://www.encodeproject.org/files/ENCFF871SED/@@download/ENCFF871SED.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF362FWV bigBed narrowPeak replicated peaks ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF871SED 2398997 ENCODE Processing Pipeline d172bceb4c7589bd6bc53c6ad8d2147a https://www.encodeproject.org/files/ENCFF362FWV/@@download/ENCFF362FWV.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001KLV bam alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KMI 785302623 Bing Ren, UCSD d1c4599ec4b504243481911da7a71ad7 https://www.encodeproject.org/files/ENCFF001KLV/@@download/ENCFF001KLV.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KLW bam alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KMH 601113094 Bing Ren, UCSD b6a3a58043b964bba2fd61b97f739978 https://www.encodeproject.org/files/ENCFF001KLW/@@download/ENCFF001KLW.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KLY bigBed broadPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXV 696768 Bing Ren, UCSD 08cafad8a09d4b0f9cf7aabbb45c9490 https://www.encodeproject.org/files/ENCFF001KLY/@@download/ENCFF001KLY.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KLZ bigWig signal ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KLV, ENCFF001KLW 30995775 Bing Ren, UCSD 2e68e5834e30f86f91d64d03500896d4 https://www.encodeproject.org/files/ENCFF001KLZ/@@download/ENCFF001KLZ.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KMH fastq reads ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 575791150 Bing Ren, UCSD d8ef54eddcf041f11af78646ab365858 https://www.encodeproject.org/files/ENCFF001KMH/@@download/ENCFF001KMH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNY/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KMI fastq reads ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 759045870 Bing Ren, UCSD f4402658e107c86c7682d74210533702 https://www.encodeproject.org/files/ENCFF001KMI/@@download/ENCFF001KMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KNX/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001XXV bed broadPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KLV, ENCFF001KLW 450022 Bing Ren, UCSD d513b9e3be0175a1a24a8cfac4b36b08 https://www.encodeproject.org/files/ENCFF001XXV/@@download/ENCFF001XXV.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF396RTR bam unfiltered alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMI, ENCFF018NEO 822487129 ENCODE Processing Pipeline 98d31a02e2889e1339cd499c2bf07af6 https://www.encodeproject.org/files/ENCFF396RTR/@@download/ENCFF396RTR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF559JKR bam unfiltered alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMH, ENCFF018NEO 631319330 ENCODE Processing Pipeline 5aad61bc751394c821714de49f45c230 https://www.encodeproject.org/files/ENCFF559JKR/@@download/ENCFF559JKR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF726OSP bam alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMH, ENCFF018NEO 402958942 ENCODE Processing Pipeline 8f6a02e8812ac5ae1de6b711dc96f006 https://www.encodeproject.org/files/ENCFF726OSP/@@download/ENCFF726OSP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF734PDO bam alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMI, ENCFF018NEO 535296201 ENCODE Processing Pipeline 438b6a0217862e75c83b91d9a3f1e26c https://www.encodeproject.org/files/ENCFF734PDO/@@download/ENCFF734PDO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF196ESP bed narrowPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF726OSP, ENCFF734PDO 1737585 ENCODE Processing Pipeline 12747f816ddde5a608d9152f41fb1c10 https://www.encodeproject.org/files/ENCFF196ESP/@@download/ENCFF196ESP.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF776JLM bed narrowPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF734PDO 1709539 ENCODE Processing Pipeline ee3a9661027dbf55495a48112fab3628 https://www.encodeproject.org/files/ENCFF776JLM/@@download/ENCFF776JLM.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF090AEL bed narrowPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF726OSP 1592630 ENCODE Processing Pipeline f6924a79d23684f8095841c3cb488f9d https://www.encodeproject.org/files/ENCFF090AEL/@@download/ENCFF090AEL.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF729AKC bigBed narrowPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF776JLM 4533251 ENCODE Processing Pipeline a7e1d553b3a59fa9ee3bfe1e7f20d9bc https://www.encodeproject.org/files/ENCFF729AKC/@@download/ENCFF729AKC.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF733KUI bigBed narrowPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF090AEL 4291430 ENCODE Processing Pipeline c47a5b8ec61ab7f59882e6d224a24f65 https://www.encodeproject.org/files/ENCFF733KUI/@@download/ENCFF733KUI.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF954CLT bigBed narrowPeak peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF196ESP 4513702 ENCODE Processing Pipeline 67196bd294a513ef7bc27b3e3a064e0c https://www.encodeproject.org/files/ENCFF954CLT/@@download/ENCFF954CLT.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF855JNF bigWig signal p-value ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF726OSP 270260935 ENCODE Processing Pipeline 1fdc914442c60caf974b9c0326e58b9d https://www.encodeproject.org/files/ENCFF855JNF/@@download/ENCFF855JNF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF725CGJ bigWig signal p-value ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF734PDO 287023609 ENCODE Processing Pipeline 31d8c82b5be639219a8f85505a54d4ef https://www.encodeproject.org/files/ENCFF725CGJ/@@download/ENCFF725CGJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF372GZF bigWig signal p-value ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF726OSP, ENCFF734PDO 391658604 ENCODE Processing Pipeline c97cfe742c6d0274687bf906e0e3f754 https://www.encodeproject.org/files/ENCFF372GZF/@@download/ENCFF372GZF.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF300MYS bigWig fold change over control ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF734PDO 216665730 ENCODE Processing Pipeline 0d2335bc0208a45968cddfb883875a9f https://www.encodeproject.org/files/ENCFF300MYS/@@download/ENCFF300MYS.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF694QCC bigWig fold change over control ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF726OSP 180838044 ENCODE Processing Pipeline 723cb09cb415864832be58aa7b891de7 https://www.encodeproject.org/files/ENCFF694QCC/@@download/ENCFF694QCC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF632VNQ bigWig fold change over control ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF726OSP, ENCFF734PDO 319047074 ENCODE Processing Pipeline 5d9f45d542db4e8d2d21d43aafc936d3 https://www.encodeproject.org/files/ENCFF632VNQ/@@download/ENCFF632VNQ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF545NYE bed narrowPeak replicated peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF090AEL, ENCFF196ESP, ENCFF776JLM 2017129 ENCODE Processing Pipeline f0ed7fe888546de840a61c19b18056dd https://www.encodeproject.org/files/ENCFF545NYE/@@download/ENCFF545NYE.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF252XTB bigBed narrowPeak replicated peaks ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF545NYE 3742101 ENCODE Processing Pipeline aed52ed7edb057948208207d041fe1c2 https://www.encodeproject.org/files/ENCFF252XTB/@@download/ENCFF252XTB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001KDR bigBed broadPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWQ 318928 Bing Ren, UCSD f1c435e6d982746f43a1baaee8d34f84 https://www.encodeproject.org/files/ENCFF001KDR/@@download/ENCFF001KDR.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDS bigWig signal ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KDT, ENCFF001KDU 71410844 Bing Ren, UCSD d4e6adc3751b6d1113a4a4a622029ac3 https://www.encodeproject.org/files/ENCFF001KDS/@@download/ENCFF001KDS.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDT bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KED 2121250599 Bing Ren, UCSD a78743e32633024c80fccd78ec6ea68f https://www.encodeproject.org/files/ENCFF001KDT/@@download/ENCFF001KDT.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDU bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KEC 1912721024 Bing Ren, UCSD d10bf404b3bf14edb2b0e9d8d75252a2 https://www.encodeproject.org/files/ENCFF001KDU/@@download/ENCFF001KDU.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KEC fastq reads ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 2036025520 Bing Ren, UCSD df7fb0f245789e1e49c6fc38ba6f07fc https://www.encodeproject.org/files/ENCFF001KEC/@@download/ENCFF001KEC.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEX/ released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KED fastq reads ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 2230239613 Bing Ren, UCSD bd4f095bc1cd6c0899c3724905599377 https://www.encodeproject.org/files/ENCFF001KED/@@download/ENCFF001KED.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEU/ released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XWQ bed broadPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KDT, ENCFF001KDU 199793 Bing Ren, UCSD 3605ecbe2d710d5dd902ab4d1a266e50 https://www.encodeproject.org/files/ENCFF001XWQ/@@download/ENCFF001XWQ.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF994EUC bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KED, ENCFF806TVZ 565188840 ENCODE Processing Pipeline fa11b97c99d889e43407eaddab229eec https://www.encodeproject.org/files/ENCFF994EUC/@@download/ENCFF994EUC.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF963DHJ bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KEC, ENCFF806TVZ 409850577 ENCODE Processing Pipeline 9f40239356dc738fca3ca53308823cd5 https://www.encodeproject.org/files/ENCFF963DHJ/@@download/ENCFF963DHJ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF646BMV bigWig fold change over control ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF343KWM, ENCFF749CPB, ENCFF963DHJ 223276817 ENCODE Processing Pipeline 2562bcb197c8c82a834c11be82c0f4a5 https://www.encodeproject.org/files/ENCFF646BMV/@@download/ENCFF646BMV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF496OVI bigBed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF095XFO 3151309 ENCODE Processing Pipeline fa23f9412f8f975ec3e7a0e1673cb625 https://www.encodeproject.org/files/ENCFF496OVI/@@download/ENCFF496OVI.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF466OFF bigBed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF951QXT 3492891 ENCODE Processing Pipeline 8eff6f6c8671a33beb2e625e0f82b12f https://www.encodeproject.org/files/ENCFF466OFF/@@download/ENCFF466OFF.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF731GNK bigWig signal p-value ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF343KWM, ENCFF749CPB, ENCFF963DHJ, ENCFF994EUC 462028392 ENCODE Processing Pipeline f2340be0e699a94c8205e4e945f6c042 https://www.encodeproject.org/files/ENCFF731GNK/@@download/ENCFF731GNK.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF625XGZ bigWig fold change over control ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF343KWM, ENCFF749CPB, ENCFF963DHJ, ENCFF994EUC 430362340 ENCODE Processing Pipeline 94f34399f105b7651c24b67e74e569db https://www.encodeproject.org/files/ENCFF625XGZ/@@download/ENCFF625XGZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF711SPP bed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF343KWM, ENCFF749CPB, ENCFF963DHJ 947940 ENCODE Processing Pipeline 2e3bf67b0ed371a3857d80b1a02ba682 https://www.encodeproject.org/files/ENCFF711SPP/@@download/ENCFF711SPP.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF633GIV bigWig signal p-value ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF343KWM, ENCFF749CPB, ENCFF963DHJ 381786127 ENCODE Processing Pipeline f668a3932bba3b55ed579b1303152cce https://www.encodeproject.org/files/ENCFF633GIV/@@download/ENCFF633GIV.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF950WJB bigWig fold change over control ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF343KWM, ENCFF749CPB, ENCFF994EUC 285344941 ENCODE Processing Pipeline 0c95496361e7e6d8bd36071fce0fffe5 https://www.encodeproject.org/files/ENCFF950WJB/@@download/ENCFF950WJB.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF279HUN bed narrowPeak replicated peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF095XFO, ENCFF711SPP, ENCFF951QXT 359160 ENCODE Processing Pipeline 0582f14abb7729f935e48ecd35131f00 https://www.encodeproject.org/files/ENCFF279HUN/@@download/ENCFF279HUN.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF095XFO bed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF343KWM, ENCFF749CPB, ENCFF963DHJ, ENCFF994EUC 1439594 ENCODE Processing Pipeline bdc2aac25294150ce3e7bccd341b6f3d https://www.encodeproject.org/files/ENCFF095XFO/@@download/ENCFF095XFO.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF587SQW bigBed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF711SPP 2267657 ENCODE Processing Pipeline bc3fed144834563d6615473950e0e479 https://www.encodeproject.org/files/ENCFF587SQW/@@download/ENCFF587SQW.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF715MCU bigBed narrowPeak replicated peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF279HUN 1006730 ENCODE Processing Pipeline 9d3208ea6d991833c2f0eeca976c8d45 https://www.encodeproject.org/files/ENCFF715MCU/@@download/ENCFF715MCU.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF951QXT bed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF343KWM, ENCFF749CPB, ENCFF994EUC 1581233 ENCODE Processing Pipeline 3c5f7fa5a8228ce2d8c6cd1a6b906c08 https://www.encodeproject.org/files/ENCFF951QXT/@@download/ENCFF951QXT.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF477EJQ bigWig signal p-value ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF343KWM, ENCFF749CPB, ENCFF994EUC 350828379 ENCODE Processing Pipeline 3467d81eebfbeb6c2ba718157461240c https://www.encodeproject.org/files/ENCFF477EJQ/@@download/ENCFF477EJQ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF899PHQ bam unfiltered alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KED, ENCFF806TVZ 2244336736 ENCODE Processing Pipeline 99bd41c3befd77ac387bdb7693bf61a7 https://www.encodeproject.org/files/ENCFF899PHQ/@@download/ENCFF899PHQ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF221UZX bam unfiltered alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KEC, ENCFF018NEO 2007910168 ENCODE Processing Pipeline c12d6ead452466a10106e5487fd8e845 https://www.encodeproject.org/files/ENCFF221UZX/@@download/ENCFF221UZX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF359LIR bam unfiltered alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KED, ENCFF018NEO 2246219764 ENCODE Processing Pipeline 4cd516002126fdd9640172579d77382a https://www.encodeproject.org/files/ENCFF359LIR/@@download/ENCFF359LIR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF041GIV bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KED, ENCFF018NEO 564885160 ENCODE Processing Pipeline 8a3870fb31a4ca9e1954ac6b75a79471 https://www.encodeproject.org/files/ENCFF041GIV/@@download/ENCFF041GIV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF831LGQ bam unfiltered alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KEC, ENCFF806TVZ 2006077608 ENCODE Processing Pipeline 3a1cbc597e638a0b61b5ee1f7c1acf2d https://www.encodeproject.org/files/ENCFF831LGQ/@@download/ENCFF831LGQ.bam mm10-minimal archived low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF006QMD bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KEC, ENCFF018NEO 409632493 ENCODE Processing Pipeline 50ac6306bead63cb8b8d280995c7ea03 https://www.encodeproject.org/files/ENCFF006QMD/@@download/ENCFF006QMD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF399NVZ bigBed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF213RUF 2270139 ENCODE Processing Pipeline 22219257a04abad28355a569c31bebff https://www.encodeproject.org/files/ENCFF399NVZ/@@download/ENCFF399NVZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF559ZFN bigWig fold change over control ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF041GIV, ENCFF439WCI, ENCFF683TKC 285132518 ENCODE Processing Pipeline 4e2a686580249a49612ea940de2cffde https://www.encodeproject.org/files/ENCFF559ZFN/@@download/ENCFF559ZFN.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF625UPA bed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF041GIV, ENCFF439WCI, ENCFF683TKC 1582638 ENCODE Processing Pipeline 0d4a3e26fc36bb86b62b0a3f35658c58 https://www.encodeproject.org/files/ENCFF625UPA/@@download/ENCFF625UPA.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF587RBP bigWig signal p-value ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF006QMD, ENCFF041GIV, ENCFF439WCI, ENCFF683TKC 454162170 ENCODE Processing Pipeline ee5d84470963774743fb74a3393e918d https://www.encodeproject.org/files/ENCFF587RBP/@@download/ENCFF587RBP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF472QPM bigBed narrowPeak replicated peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF558YNC 1006842 ENCODE Processing Pipeline eb413b90f6a4d61e69316a052bf39ff8 https://www.encodeproject.org/files/ENCFF472QPM/@@download/ENCFF472QPM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF055QNY bed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF006QMD, ENCFF041GIV, ENCFF439WCI, ENCFF683TKC 1440301 ENCODE Processing Pipeline 8dceecc078754f2a3fd0651f62800f4d https://www.encodeproject.org/files/ENCFF055QNY/@@download/ENCFF055QNY.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF201EDE bigWig signal p-value ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF041GIV, ENCFF439WCI, ENCFF683TKC 335291584 ENCODE Processing Pipeline c23ce8f9b56556ee7f37a1f4a8389c68 https://www.encodeproject.org/files/ENCFF201EDE/@@download/ENCFF201EDE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF310TLA bigBed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF625UPA 3498064 ENCODE Processing Pipeline e9119d79dce55d47cf74df5b371deaef https://www.encodeproject.org/files/ENCFF310TLA/@@download/ENCFF310TLA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF316WWL bigWig fold change over control ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF006QMD, ENCFF041GIV, ENCFF439WCI, ENCFF683TKC 429181943 ENCODE Processing Pipeline 29fdefe5295349e8eed0d0225f056636 https://www.encodeproject.org/files/ENCFF316WWL/@@download/ENCFF316WWL.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF213RUF bed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF006QMD, ENCFF439WCI, ENCFF683TKC 948612 ENCODE Processing Pipeline b0f73f8d9239ec5a335ac505c025958f https://www.encodeproject.org/files/ENCFF213RUF/@@download/ENCFF213RUF.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF339LRS bigBed narrowPeak peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF055QNY 3154064 ENCODE Processing Pipeline fd42b26b38c13206aa97491ea9956062 https://www.encodeproject.org/files/ENCFF339LRS/@@download/ENCFF339LRS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF626GMY bigWig signal p-value ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF006QMD, ENCFF439WCI, ENCFF683TKC 362714406 ENCODE Processing Pipeline 597fcfbce3b982de5acc1d851d89c6e6 https://www.encodeproject.org/files/ENCFF626GMY/@@download/ENCFF626GMY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF423FHD bigWig fold change over control ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF006QMD, ENCFF439WCI, ENCFF683TKC 224708599 ENCODE Processing Pipeline 554a7e8cdeea611604da11e4f1c4376d https://www.encodeproject.org/files/ENCFF423FHD/@@download/ENCFF423FHD.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF558YNC bed narrowPeak replicated peaks ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF055QNY, ENCFF213RUF, ENCFF625UPA 358479 ENCODE Processing Pipeline eb44397141a028e29f3a463e9e81d9bc https://www.encodeproject.org/files/ENCFF558YNC/@@download/ENCFF558YNC.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KQO bigBed broadPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYM 1359637 Bing Ren, UCSD f09c8e29ca0c9f1de322c76239dd6a7b https://www.encodeproject.org/files/ENCFF001KQO/@@download/ENCFF001KQO.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KQP bam alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KQZ 1314698578 Bing Ren, UCSD 30ee8c8498cbbeffbb7f510939bdfed7 https://www.encodeproject.org/files/ENCFF001KQP/@@download/ENCFF001KQP.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KQQ bam alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KRA 1509169205 Bing Ren, UCSD f1a14e71688e9df7d017b52d3dc1a09f https://www.encodeproject.org/files/ENCFF001KQQ/@@download/ENCFF001KQQ.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KQR bigWig signal ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KQP, ENCFF001KQQ 50230578 Bing Ren, UCSD 76ffa0738026110b430b2044ef20a09d https://www.encodeproject.org/files/ENCFF001KQR/@@download/ENCFF001KQR.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KQZ fastq reads ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 1241213580 Bing Ren, UCSD 68dd02fd940b9ad277e24bccd609462c https://www.encodeproject.org/files/ENCFF001KQZ/@@download/ENCFF001KQZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length insufficient read depth, control insufficient read depth ENCFF001KRA fastq reads ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 1434357305 Bing Ren, UCSD 65fa824141cf652b1b496fba460aedbe https://www.encodeproject.org/files/ENCFF001KRA/@@download/ENCFF001KRA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length insufficient read depth, control insufficient read depth ENCFF001XYM bed broadPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KQP, ENCFF001KQQ 854424 Bing Ren, UCSD 94d6ba91b426878881730a05816c96dc https://www.encodeproject.org/files/ENCFF001XYM/@@download/ENCFF001XYM.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF993GON bam unfiltered alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRA, ENCFF018NEO 1578413477 ENCODE Processing Pipeline 3bb4fe3c37ab17c107f7d7229c921178 https://www.encodeproject.org/files/ENCFF993GON/@@download/ENCFF993GON.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF346YSI bam unfiltered alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQZ, ENCFF018NEO 1376010539 ENCODE Processing Pipeline 4836f8ccc387ceebc1f361947cd90e8f https://www.encodeproject.org/files/ENCFF346YSI/@@download/ENCFF346YSI.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF868MGY bam alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRA, ENCFF018NEO 868111808 ENCODE Processing Pipeline a4b8683f2044f6a7cf746e6d6679d7f8 https://www.encodeproject.org/files/ENCFF868MGY/@@download/ENCFF868MGY.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF126ATE bam alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQZ, ENCFF018NEO 790548497 ENCODE Processing Pipeline 4d062fa1e7e972042a14d5d6799d50d1 https://www.encodeproject.org/files/ENCFF126ATE/@@download/ENCFF126ATE.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF061XIM bed narrowPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF126ATE, ENCFF342BIA, ENCFF780TFB 2411115 ENCODE Processing Pipeline 4a5ef1c49482099fc19986ed765402a4 https://www.encodeproject.org/files/ENCFF061XIM/@@download/ENCFF061XIM.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF791DJO bigBed narrowPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF061XIM 6319693 ENCODE Processing Pipeline c792a8821490487dde01bf539f171e6a https://www.encodeproject.org/files/ENCFF791DJO/@@download/ENCFF791DJO.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF316SDS bigBed narrowPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF308VTF 4128091 ENCODE Processing Pipeline 6a3fea82942d8f5a08febecac007e6db https://www.encodeproject.org/files/ENCFF316SDS/@@download/ENCFF316SDS.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF308VTF bed narrowPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF780TFB, ENCFF868MGY 1508393 ENCODE Processing Pipeline 458701862f75ed43fadacf6562481e53 https://www.encodeproject.org/files/ENCFF308VTF/@@download/ENCFF308VTF.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF130AKL bigBed narrowPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF679RKV 5664599 ENCODE Processing Pipeline 28c5c8e8892716cc2f1ef15696f3d321 https://www.encodeproject.org/files/ENCFF130AKL/@@download/ENCFF130AKL.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF679RKV bed narrowPeak peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF126ATE, ENCFF342BIA, ENCFF780TFB, ENCFF868MGY 2171892 ENCODE Processing Pipeline 2d55b3b22724106d9cd6c1a38f4635e8 https://www.encodeproject.org/files/ENCFF679RKV/@@download/ENCFF679RKV.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF097OIK bigWig signal p-value ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF780TFB, ENCFF868MGY 171621239 ENCODE Processing Pipeline f0830f8a799281e7440f750eebe0f108 https://www.encodeproject.org/files/ENCFF097OIK/@@download/ENCFF097OIK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF143LRP bigWig signal p-value ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF126ATE, ENCFF342BIA, ENCFF780TFB 300683250 ENCODE Processing Pipeline 6ce8bdcb0f2a1eab7e8b9b13fab50770 https://www.encodeproject.org/files/ENCFF143LRP/@@download/ENCFF143LRP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF047KNM bigWig signal p-value ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF126ATE, ENCFF342BIA, ENCFF780TFB, ENCFF868MGY 292750209 ENCODE Processing Pipeline e1e864af248ad4fd28ab2d10d2539732 https://www.encodeproject.org/files/ENCFF047KNM/@@download/ENCFF047KNM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF022NXK bigWig fold change over control ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF126ATE, ENCFF342BIA, ENCFF780TFB 266339961 ENCODE Processing Pipeline 368611bec05ce9b973e1245abbf667ee https://www.encodeproject.org/files/ENCFF022NXK/@@download/ENCFF022NXK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF845SAH bigWig fold change over control ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF780TFB, ENCFF868MGY 241820857 ENCODE Processing Pipeline c600a9636d1f71de6f66c7fb5d6427d5 https://www.encodeproject.org/files/ENCFF845SAH/@@download/ENCFF845SAH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF196INA bed narrowPeak replicated peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF061XIM, ENCFF308VTF, ENCFF679RKV 2461312 ENCODE Processing Pipeline 30c64964dba1bb8fedbc48fce6ce9078 https://www.encodeproject.org/files/ENCFF196INA/@@download/ENCFF196INA.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF046RQB bigBed narrowPeak replicated peaks ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF196INA 4783492 ENCODE Processing Pipeline b31132aed7731aa25d1644f2f3824369 https://www.encodeproject.org/files/ENCFF046RQB/@@download/ENCFF046RQB.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF207HCQ bigWig fold change over control ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF126ATE, ENCFF342BIA, ENCFF780TFB, ENCFF868MGY 456129428 ENCODE Processing Pipeline 4678aaae9fca18f23c5453527da39395 https://www.encodeproject.org/files/ENCFF207HCQ/@@download/ENCFF207HCQ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001NVN bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NWK 473692261 Michael Snyder, Stanford fb1ca3fd709f6ff804e52ab438bad7bf https://www.encodeproject.org/files/ENCFF001NVN/@@download/ENCFF001NVN.bam mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NVP bigBed narrowPeak peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YJS 510287 Michael Snyder, Stanford 3c4ef69a2539bd1df8c22d886522e295 https://www.encodeproject.org/files/ENCFF001NVP/@@download/ENCFF001NVP.bigBed mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NVS bigWig signal ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVN, ENCFF001NVT 373872829 Michael Snyder, Stanford 3c07533baab9fc81a65549a4ad45a428 https://www.encodeproject.org/files/ENCFF001NVS/@@download/ENCFF001NVS.bigWig mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NVT bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NWG 529277995 Michael Snyder, Stanford 79b6b450a990bd8c0a2c11b968efe4bb https://www.encodeproject.org/files/ENCFF001NVT/@@download/ENCFF001NVT.bam mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NWG fastq reads ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1118627986 Michael Snyder, Stanford 444c45a755c5cc255b1e862f81d9d306 https://www.encodeproject.org/files/ENCFF001NWG/@@download/ENCFF001NWG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NWK fastq reads ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1491028464 Michael Snyder, Stanford 3489959098e292859c2e2984e0cef30b https://www.encodeproject.org/files/ENCFF001NWK/@@download/ENCFF001NWK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001YJS bed narrowPeak peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NVN, ENCFF001NVT 227617 Michael Snyder, Stanford 4e3432f4a0be9b2eb129a60f297366f6 https://www.encodeproject.org/files/ENCFF001YJS/@@download/ENCFF001YJS.bed.gz mm9 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF059FER bam unfiltered alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWK, ENCFF018NEO 1738469358 ENCODE Processing Pipeline 0e426a2ebb076076d7e2aae5803ebc43 https://www.encodeproject.org/files/ENCFF059FER/@@download/ENCFF059FER.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF099FXG bam unfiltered alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWG, ENCFF018NEO 1326225116 ENCODE Processing Pipeline 7188ee984fdc222f1568984779398b19 https://www.encodeproject.org/files/ENCFF099FXG/@@download/ENCFF099FXG.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF134EZT bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWG, ENCFF018NEO 878161766 ENCODE Processing Pipeline 2d672c14214cb4609cee91f7eece0049 https://www.encodeproject.org/files/ENCFF134EZT/@@download/ENCFF134EZT.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF575MON bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWK, ENCFF018NEO 1132869165 ENCODE Processing Pipeline 0f20756ccdc361f2476d5cee21be03f0 https://www.encodeproject.org/files/ENCFF575MON/@@download/ENCFF575MON.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF005XIM bigWig signal p-value ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF575MON 297776597 ENCODE Processing Pipeline aa44b6e3be01bb6d6135e1431d3ae5f9 https://www.encodeproject.org/files/ENCFF005XIM/@@download/ENCFF005XIM.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF283TDH bigWig signal p-value ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF134EZT, ENCFF171OVT 310344570 ENCODE Processing Pipeline 7b74b1015d42723a1e220cb8800a7da9 https://www.encodeproject.org/files/ENCFF283TDH/@@download/ENCFF283TDH.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF595BMC bigWig fold change over control ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF575MON 414345684 ENCODE Processing Pipeline 2b28b2948ae30499b7051e25be11a52a https://www.encodeproject.org/files/ENCFF595BMC/@@download/ENCFF595BMC.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF758JAU bed narrowPeak conservative idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF145IUH, ENCFF289XJE, ENCFF324WCV, ENCFF547MET 507439 ENCODE Processing Pipeline e28e2a347337e3768e0a78dcf591b511 https://www.encodeproject.org/files/ENCFF758JAU/@@download/ENCFF758JAU.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF693NDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF758JAU 1098971 ENCODE Processing Pipeline 64ad43d06a3ca0c17b65d5f6856f338b https://www.encodeproject.org/files/ENCFF693NDZ/@@download/ENCFF693NDZ.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF368ANL bigWig fold change over control ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF134EZT, ENCFF171OVT, ENCFF575MON 633253285 ENCODE Processing Pipeline 7e9a004908c322be24f9b3afbd634f9b https://www.encodeproject.org/files/ENCFF368ANL/@@download/ENCFF368ANL.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF324WCV bed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF171OVT, ENCFF575MON 5801480 ENCODE Processing Pipeline 73831a99628812a4e8627abf084aa7d2 https://www.encodeproject.org/files/ENCFF324WCV/@@download/ENCFF324WCV.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF402HPW bigWig signal p-value ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF134EZT, ENCFF171OVT, ENCFF575MON 282134110 ENCODE Processing Pipeline 7baa9002024fe60beabf7e81061bd58d https://www.encodeproject.org/files/ENCFF402HPW/@@download/ENCFF402HPW.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF765VAO bigWig fold change over control ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF134EZT, ENCFF171OVT 363175682 ENCODE Processing Pipeline 2e68102df215f584c5c71aa4e486c1c0 https://www.encodeproject.org/files/ENCFF765VAO/@@download/ENCFF765VAO.bigWig mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF472SCH bigBed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF289XJE 13071607 ENCODE Processing Pipeline a5cc38fd1115920d582a3b440e406484 https://www.encodeproject.org/files/ENCFF472SCH/@@download/ENCFF472SCH.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF145IUH bed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF134EZT, ENCFF171OVT, ENCFF575MON 6363217 ENCODE Processing Pipeline e80e38bb79eb0dc94f4a81301377af01 https://www.encodeproject.org/files/ENCFF145IUH/@@download/ENCFF145IUH.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF212HMJ bigBed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF145IUH 12984106 ENCODE Processing Pipeline 28ea1f0acbd22c6d44c56af13dc7991c https://www.encodeproject.org/files/ENCFF212HMJ/@@download/ENCFF212HMJ.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF642PGG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF716KJE 1129979 ENCODE Processing Pipeline e1eeed42838dc5f2313aad43ec2000ba https://www.encodeproject.org/files/ENCFF642PGG/@@download/ENCFF642PGG.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF289XJE bed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF134EZT, ENCFF171OVT 5517418 ENCODE Processing Pipeline f5730b3e57f57b1a90ec8c69c695e19f https://www.encodeproject.org/files/ENCFF289XJE/@@download/ENCFF289XJE.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF980ALT bigBed narrowPeak peaks and background as input for IDR ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF324WCV 13074700 ENCODE Processing Pipeline c996e30489afa0bca52aaa6c02153fae https://www.encodeproject.org/files/ENCFF980ALT/@@download/ENCFF980ALT.bigBed mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF716KJE bed narrowPeak optimal idr thresholded peaks ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF145IUH, ENCFF289XJE, ENCFF324WCV, ENCFF547MET 525778 ENCODE Processing Pipeline 4a9a31c17efae46e029d29a6f46f9a09 https://www.encodeproject.org/files/ENCFF716KJE/@@download/ENCFF716KJE.bed.gz mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001KQC bigBed broadPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XYK 553486 Bing Ren, UCSD f6f3210b3e8575306c7d8768ec000030 https://www.encodeproject.org/files/ENCFF001KQC/@@download/ENCFF001KQC.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KQD bam alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KQK 624887718 Bing Ren, UCSD 82879edf5a1085bb989492e071d29852 https://www.encodeproject.org/files/ENCFF001KQD/@@download/ENCFF001KQD.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KQE bam alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KQL 626286045 Bing Ren, UCSD b91f9ca3546f18e9bde1bfec39572bb9 https://www.encodeproject.org/files/ENCFF001KQE/@@download/ENCFF001KQE.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KQF bigWig signal ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KQD, ENCFF001KQE 28703996 Bing Ren, UCSD ae04284e3f69966e6c1804a74c8a002c https://www.encodeproject.org/files/ENCFF001KQF/@@download/ENCFF001KQF.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KQK fastq reads ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 635342283 Bing Ren, UCSD 2bc3244d73c54114cd3a5850b4f452b3 https://www.encodeproject.org/files/ENCFF001KQK/@@download/ENCFF001KQK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRJ/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001KQL fastq reads ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 646590439 Bing Ren, UCSD cc33a2f6b2342977ea414cbe542fcfad https://www.encodeproject.org/files/ENCFF001KQL/@@download/ENCFF001KQL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KRK/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001XYK bed broadPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KQD, ENCFF001KQE 326254 Bing Ren, UCSD 7b97de1fd0b41982aceb207666c82ef2 https://www.encodeproject.org/files/ENCFF001XYK/@@download/ENCFF001XYK.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF445KMG bam unfiltered alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQL, ENCFF018NEO 659084845 ENCODE Processing Pipeline 97077860cf0edc9926e2cfa6952524c0 https://www.encodeproject.org/files/ENCFF445KMG/@@download/ENCFF445KMG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF532FYW bam unfiltered alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQK, ENCFF018NEO 661253458 ENCODE Processing Pipeline 5e0dac5b6ac250f8879b7a1b3d4b65ac https://www.encodeproject.org/files/ENCFF532FYW/@@download/ENCFF532FYW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF658GXG bam alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQL, ENCFF018NEO 380133266 ENCODE Processing Pipeline b6ee840b1d49bbc0b894ae55d09bea7b https://www.encodeproject.org/files/ENCFF658GXG/@@download/ENCFF658GXG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF067WIS bam alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQK, ENCFF018NEO 413631103 ENCODE Processing Pipeline 7e0a595593706efbcc79d4ee4e1ec919 https://www.encodeproject.org/files/ENCFF067WIS/@@download/ENCFF067WIS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF688FGL bigBed narrowPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF945OIA 2579242 ENCODE Processing Pipeline 6b39005e147e3aae17d616a0122b574b https://www.encodeproject.org/files/ENCFF688FGL/@@download/ENCFF688FGL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF945OIA bed narrowPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF658GXG, ENCFF780TFB 931549 ENCODE Processing Pipeline a87867ae185934881c59ce9f8487ab7f https://www.encodeproject.org/files/ENCFF945OIA/@@download/ENCFF945OIA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF710XRJ bed narrowPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF067WIS, ENCFF342BIA, ENCFF780TFB 1175431 ENCODE Processing Pipeline dd55504a8f626430452ae2a5ff2e1009 https://www.encodeproject.org/files/ENCFF710XRJ/@@download/ENCFF710XRJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF754YNN bigBed narrowPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF710XRJ 3167362 ENCODE Processing Pipeline 424623e0798b78b5d470c3db7a46f0dd https://www.encodeproject.org/files/ENCFF754YNN/@@download/ENCFF754YNN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF925EGI bigBed narrowPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF478KOG 2966547 ENCODE Processing Pipeline 659222db65e6acbea983f8d1726d9cc2 https://www.encodeproject.org/files/ENCFF925EGI/@@download/ENCFF925EGI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF478KOG bed narrowPeak peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF067WIS, ENCFF342BIA, ENCFF658GXG, ENCFF780TFB 1117197 ENCODE Processing Pipeline 2eb7b1d40744b53d5e550f54c09bc6e4 https://www.encodeproject.org/files/ENCFF478KOG/@@download/ENCFF478KOG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF394LUM bigWig signal p-value ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF658GXG, ENCFF780TFB 168804854 ENCODE Processing Pipeline c16d3f7da60e4e01ce02e1b934c9ef39 https://www.encodeproject.org/files/ENCFF394LUM/@@download/ENCFF394LUM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF997SNR bigWig fold change over control ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF658GXG, ENCFF780TFB 131349043 ENCODE Processing Pipeline 36a6ea4b171a54104e376cfd6518c927 https://www.encodeproject.org/files/ENCFF997SNR/@@download/ENCFF997SNR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF343OFX bigWig signal p-value ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF067WIS, ENCFF342BIA, ENCFF780TFB 247135475 ENCODE Processing Pipeline b8d93f7fc710dfeaec1f2be8217d6650 https://www.encodeproject.org/files/ENCFF343OFX/@@download/ENCFF343OFX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF353LFI bigWig fold change over control ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF067WIS, ENCFF342BIA, ENCFF780TFB 172013699 ENCODE Processing Pipeline 35ea0ff4ba28627b81b928ceba443016 https://www.encodeproject.org/files/ENCFF353LFI/@@download/ENCFF353LFI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF352TNV bigWig signal p-value ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF067WIS, ENCFF342BIA, ENCFF658GXG, ENCFF780TFB 278439650 ENCODE Processing Pipeline d989d217490fa763ee0bdcbab2d4fc23 https://www.encodeproject.org/files/ENCFF352TNV/@@download/ENCFF352TNV.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF078RJZ bed narrowPeak replicated peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF478KOG, ENCFF710XRJ, ENCFF945OIA 1344902 ENCODE Processing Pipeline f9e08eb78e7211e0eebd8aca55246c96 https://www.encodeproject.org/files/ENCFF078RJZ/@@download/ENCFF078RJZ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF414TDD bigWig fold change over control ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF067WIS, ENCFF342BIA, ENCFF658GXG, ENCFF780TFB 271186184 ENCODE Processing Pipeline 7ade3b374c64e4d4639d971e3d4c4d3e https://www.encodeproject.org/files/ENCFF414TDD/@@download/ENCFF414TDD.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF163VKE bigBed narrowPeak replicated peaks ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF078RJZ 2622134 ENCODE Processing Pipeline 15a626e413126c0380a53e1e0bc1e8fd https://www.encodeproject.org/files/ENCFF163VKE/@@download/ENCFF163VKE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF001MQD bam alignments ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 ENCFF001MQJ 1869394149 Ross Hardison, PennState b68a85d09e3d63bf86db6eb458c188ff https://www.encodeproject.org/files/ENCFF001MQD/@@download/ENCFF001MQD.bam mm9 released low read length, inconsistent platforms ENCFF001MQE bigBed broadPeak peaks ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 ENCFF001YFM 697650 Ross Hardison, PennState e943ea70133b2bbe47cb5a5223158dcc https://www.encodeproject.org/files/ENCFF001MQE/@@download/ENCFF001MQE.bigBed mm9 released low read length, inconsistent platforms ENCFF001MQF bigWig signal ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 4136119102 Ross Hardison, PennState fb9be00d4dd44b1edc8da2e35d5ad41c https://www.encodeproject.org/files/ENCFF001MQF/@@download/ENCFF001MQF.bigWig mm9 released low read length, inconsistent platforms missing derived_from ENCFF001MQJ fastq reads ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 41 single-ended 1491664196 Ross Hardison, PennState e0df3054745b02a795bbacb9458f4449 https://www.encodeproject.org/files/ENCFF001MQJ/@@download/ENCFF001MQJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MRH/ released low read length, inconsistent platforms, inconsistent control read length ENCFF001YFM bed broadPeak peaks ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 1 349836 Ross Hardison, PennState 3b75f1250b240d7d67e50352cfb8de84 https://www.encodeproject.org/files/ENCFF001YFM/@@download/ENCFF001YFM.bed.gz mm9 released low read length, inconsistent platforms missing derived_from ENCFF940KUK bam unfiltered alignments ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQJ, ENCFF018NEO 1962312023 ENCODE Processing Pipeline b0954e0e4e8bf9f7757c8f2ad989ad56 https://www.encodeproject.org/files/ENCFF940KUK/@@download/ENCFF940KUK.bam mm10 released low read length, inconsistent platforms ENCFF054PYK bam alignments ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQJ, ENCFF018NEO 1378213180 ENCODE Processing Pipeline c4fd930589ffcd9d2297a58ddcd478df https://www.encodeproject.org/files/ENCFF054PYK/@@download/ENCFF054PYK.bam mm10 released low read length, inconsistent platforms ENCFF002AMZ fastq reads ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 939719962 Bing Ren, UCSD c936cf1afeb9df0c4461234ae64c65f9 SRA:SRR3651204 https://www.encodeproject.org/files/ENCFF002AMZ/@@download/ENCFF002AMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQN/ released low read length, control low read depth, low read depth ENCFF002ANA fastq reads ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1189361026 Bing Ren, UCSD 73bbc8e56b6a4d03288008121080bd7a SRA:SRR3651203 https://www.encodeproject.org/files/ENCFF002ANA/@@download/ENCFF002ANA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQP/ released low read length, control low read depth, inconsistent control read length, low read depth ENCFF444QHP bam alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AMZ, ENCFF806TVZ 611012767 ENCODE Processing Pipeline a5e9f65a11659f70117b41581b47619b https://www.encodeproject.org/files/ENCFF444QHP/@@download/ENCFF444QHP.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF438XLZ bam alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ANA, ENCFF806TVZ 736931039 ENCODE Processing Pipeline eaae9a0aed775e30aa75c1b50b262f8f https://www.encodeproject.org/files/ENCFF438XLZ/@@download/ENCFF438XLZ.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF403VEV bigBed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF437MNM 1568421 ENCODE Processing Pipeline 2602f91efdfb05b9b08291ee6c008314 https://www.encodeproject.org/files/ENCFF403VEV/@@download/ENCFF403VEV.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF437MNM bed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444QHP, ENCFF576KAS 463722 ENCODE Processing Pipeline cd8f11e43a54f829a46f04e3c4b83446 https://www.encodeproject.org/files/ENCFF437MNM/@@download/ENCFF437MNM.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF600UDJ bed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF438XLZ, ENCFF444QHP, ENCFF576KAS 505086 ENCODE Processing Pipeline 27eb1a126cf669e2a84e4c567de91a35 https://www.encodeproject.org/files/ENCFF600UDJ/@@download/ENCFF600UDJ.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF368ZJT bed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF438XLZ 534519 ENCODE Processing Pipeline e6c8b7dc04479467815291d7fb7e2350 https://www.encodeproject.org/files/ENCFF368ZJT/@@download/ENCFF368ZJT.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF206ZOV bigBed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF368ZJT 1796040 ENCODE Processing Pipeline d26f663c447fed490dde7b20b06f6edf https://www.encodeproject.org/files/ENCFF206ZOV/@@download/ENCFF206ZOV.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF191TWL bigBed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF600UDJ 1667987 ENCODE Processing Pipeline a8a4ff9c27682e9b6ce4afd2cd6d2e13 https://www.encodeproject.org/files/ENCFF191TWL/@@download/ENCFF191TWL.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF507CKK bigWig signal p-value ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF438XLZ 311283058 ENCODE Processing Pipeline 251ad3ba8c07f3deddb80bc5996e9c2c https://www.encodeproject.org/files/ENCFF507CKK/@@download/ENCFF507CKK.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF413EJW bigWig signal p-value ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF438XLZ, ENCFF444QHP, ENCFF576KAS 492957673 ENCODE Processing Pipeline 966e8dd70270df1c3d8c288773ffd298 https://www.encodeproject.org/files/ENCFF413EJW/@@download/ENCFF413EJW.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF054XUV bigWig signal p-value ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444QHP, ENCFF576KAS 266238785 ENCODE Processing Pipeline b2a50d51b1563e78914ccb3603bd440c https://www.encodeproject.org/files/ENCFF054XUV/@@download/ENCFF054XUV.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF497BSR bigWig fold change over control ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF362MXD, ENCFF438XLZ 313026581 ENCODE Processing Pipeline e07418d7c1191926aad6b63b230d4e1f https://www.encodeproject.org/files/ENCFF497BSR/@@download/ENCFF497BSR.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF457KQL bigWig fold change over control ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF444QHP, ENCFF576KAS 236457672 ENCODE Processing Pipeline 866e67739d4b65440eaa1ecc6b136264 https://www.encodeproject.org/files/ENCFF457KQL/@@download/ENCFF457KQL.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF740OED bigWig fold change over control ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF362MXD, ENCFF438XLZ, ENCFF444QHP, ENCFF576KAS 543648022 ENCODE Processing Pipeline ac17eb285df0eb9799f670afb121afa8 https://www.encodeproject.org/files/ENCFF740OED/@@download/ENCFF740OED.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF671JLH bed narrowPeak replicated peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF368ZJT, ENCFF437MNM, ENCFF600UDJ 548430 ENCODE Processing Pipeline a4bbcb7c0e63e807df61e528d2883975 https://www.encodeproject.org/files/ENCFF671JLH/@@download/ENCFF671JLH.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF126ZHX bigBed narrowPeak replicated peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF671JLH 1404346 ENCODE Processing Pipeline b4b69dd2ed13187d644a8bc079967530 https://www.encodeproject.org/files/ENCFF126ZHX/@@download/ENCFF126ZHX.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF665VUB bam unfiltered alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANA, ENCFF018NEO 1230694980 ENCODE Processing Pipeline c90e2ce3f1a9ce30dbb19ae8696fc609 https://www.encodeproject.org/files/ENCFF665VUB/@@download/ENCFF665VUB.bam mm10 released low read length, control low read depth, low read depth ENCFF918YPZ bam unfiltered alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMZ, ENCFF018NEO 947747370 ENCODE Processing Pipeline 7bdca36de3766c20820e9fa796097994 https://www.encodeproject.org/files/ENCFF918YPZ/@@download/ENCFF918YPZ.bam mm10 released low read length, control low read depth, low read depth ENCFF770YME bam alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMZ, ENCFF018NEO 610875460 ENCODE Processing Pipeline 1f6d54a49d7b57af4894b05063649559 https://www.encodeproject.org/files/ENCFF770YME/@@download/ENCFF770YME.bam mm10 released low read length, control low read depth, low read depth ENCFF141HPN bam alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANA, ENCFF018NEO 736673833 ENCODE Processing Pipeline de50fc752a7649eb1fd027a33032e6da https://www.encodeproject.org/files/ENCFF141HPN/@@download/ENCFF141HPN.bam mm10 released low read length, control low read depth, low read depth ENCFF564UZJ bed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF770YME 464343 ENCODE Processing Pipeline 8e0ad3184a16910d5c07a799ce6c5398 https://www.encodeproject.org/files/ENCFF564UZJ/@@download/ENCFF564UZJ.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF833UUO bigBed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF564UZJ 1570342 ENCODE Processing Pipeline 1c8c6a5e73e3c767809d8e3bbeda3e1f https://www.encodeproject.org/files/ENCFF833UUO/@@download/ENCFF833UUO.bigBed mm10 released low read length, control low read depth, low read depth ENCFF915KWO bigWig signal p-value ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF770YME 248687040 ENCODE Processing Pipeline 43781f7904fe685cd5da09a9c58d04a4 https://www.encodeproject.org/files/ENCFF915KWO/@@download/ENCFF915KWO.bigWig mm10 released low read length, control low read depth, low read depth ENCFF936JBF bigWig fold change over control ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF304BRA, ENCFF770YME 236399703 ENCODE Processing Pipeline fcc889fdd8b3d591903e63ea758cd865 https://www.encodeproject.org/files/ENCFF936JBF/@@download/ENCFF936JBF.bigWig mm10 released low read length, control low read depth, low read depth ENCFF274XMG bigBed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF097QYR 1730924 ENCODE Processing Pipeline 0e0397200312e4e0c8026e2834d80f84 https://www.encodeproject.org/files/ENCFF274XMG/@@download/ENCFF274XMG.bigBed mm10 released low read length, control low read depth, low read depth ENCFF683CFE bigBed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF509GSH 1678576 ENCODE Processing Pipeline 47c3f91a045a9ab8d94e900bb3542211 https://www.encodeproject.org/files/ENCFF683CFE/@@download/ENCFF683CFE.bigBed mm10 released low read length, control low read depth, low read depth ENCFF097QYR bed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF141HPN, ENCFF255MPO 512182 ENCODE Processing Pipeline 9f4f48f702dc23402b51efa6274ac51d https://www.encodeproject.org/files/ENCFF097QYR/@@download/ENCFF097QYR.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF509GSH bed narrowPeak peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF141HPN, ENCFF255MPO, ENCFF304BRA, ENCFF770YME 510331 ENCODE Processing Pipeline 24c8111ea554c47f90b7a082d456a33b https://www.encodeproject.org/files/ENCFF509GSH/@@download/ENCFF509GSH.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF893LUI bigWig fold change over control ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF141HPN, ENCFF255MPO 310630187 ENCODE Processing Pipeline 7889590559c6eaac4626dfa42bff6b80 https://www.encodeproject.org/files/ENCFF893LUI/@@download/ENCFF893LUI.bigWig mm10 released low read length, control low read depth, low read depth ENCFF282TQT bigWig signal p-value ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF141HPN, ENCFF255MPO, ENCFF304BRA, ENCFF770YME 547577319 ENCODE Processing Pipeline 61a8e6772c50f86949ffa4c08e96db81 https://www.encodeproject.org/files/ENCFF282TQT/@@download/ENCFF282TQT.bigWig mm10 released low read length, control low read depth, low read depth ENCFF638MWS bigWig signal p-value ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF141HPN, ENCFF255MPO 312428681 ENCODE Processing Pipeline 6f0ffb83543f07e40d8213a14d0d3bcd https://www.encodeproject.org/files/ENCFF638MWS/@@download/ENCFF638MWS.bigWig mm10 released low read length, control low read depth, low read depth ENCFF280VOA bigWig fold change over control ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF141HPN, ENCFF255MPO, ENCFF304BRA, ENCFF770YME 586268616 ENCODE Processing Pipeline c3e3cb28ed608df96be1bae7cff3493d https://www.encodeproject.org/files/ENCFF280VOA/@@download/ENCFF280VOA.bigWig mm10 released low read length, control low read depth, low read depth ENCFF413WVX bigBed narrowPeak replicated peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF793VQQ 1411200 ENCODE Processing Pipeline 5d852eb70ce4b7318e4d2524bbf3677a https://www.encodeproject.org/files/ENCFF413WVX/@@download/ENCFF413WVX.bigBed mm10 released low read length, control low read depth, low read depth ENCFF793VQQ bed narrowPeak replicated peaks ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF097QYR, ENCFF509GSH, ENCFF564UZJ 561772 ENCODE Processing Pipeline 44e342bfa9d213a7fec854cbd6122f9f https://www.encodeproject.org/files/ENCFF793VQQ/@@download/ENCFF793VQQ.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF002AHU fastq reads ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1176129706 Bing Ren, UCSD a1ce9847d276d9330be3eb9085526115 SRA:SRR3652075 https://www.encodeproject.org/files/ENCFF002AHU/@@download/ENCFF002AHU.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQE/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AHX fastq reads ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1337153672 Bing Ren, UCSD 84313aa2b2c292d6e6095a169e56d76a SRA:SRR3652077 https://www.encodeproject.org/files/ENCFF002AHX/@@download/ENCFF002AHX.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQC/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF070TRR bam alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHX, ENCFF806TVZ 999259722 ENCODE Processing Pipeline a0b269c8773f3260ad81912154322815 https://www.encodeproject.org/files/ENCFF070TRR/@@download/ENCFF070TRR.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF985XHS fastq reads ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 346266218 Bing Ren, UCSD 1340ea0ceeafcdc6899ac01df96708a0 SRA:SRR3652076 https://www.encodeproject.org/files/ENCFF985XHS/@@download/ENCFF985XHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQE/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF451HLI bam alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHU, ENCFF806TVZ, ENCFF985XHS 1204359226 ENCODE Processing Pipeline 65426da99eedaa92f3ea1be44d4aa659 https://www.encodeproject.org/files/ENCFF451HLI/@@download/ENCFF451HLI.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF494NSL bigBed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF289TSU 5042533 ENCODE Processing Pipeline 2fdadfd3429e0e1e620b7cc420bc8430 https://www.encodeproject.org/files/ENCFF494NSL/@@download/ENCFF494NSL.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF419IFO bigBed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF062XRQ 5399327 ENCODE Processing Pipeline 91f50d441455ce311dcacf59d58d162d https://www.encodeproject.org/files/ENCFF419IFO/@@download/ENCFF419IFO.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF780LTS bigWig signal p-value ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF451HLI, ENCFF999TAG 500110842 ENCODE Processing Pipeline d6b73e401c42e6b604d477d6e05792cb https://www.encodeproject.org/files/ENCFF780LTS/@@download/ENCFF780LTS.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF289TSU bed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF451HLI, ENCFF999TAG 2258426 ENCODE Processing Pipeline 4d0db94610cb5c97e670457f47281e7d https://www.encodeproject.org/files/ENCFF289TSU/@@download/ENCFF289TSU.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF728JCA bigWig signal p-value ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF070TRR, ENCFF387UYW, ENCFF451HLI, ENCFF999TAG 652605360 ENCODE Processing Pipeline 0103bee82e132680196242156adc958d https://www.encodeproject.org/files/ENCFF728JCA/@@download/ENCFF728JCA.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF309EAV bed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF070TRR, ENCFF387UYW, ENCFF999TAG 2919830 ENCODE Processing Pipeline 892a4959f98675158eddad14ff734415 https://www.encodeproject.org/files/ENCFF309EAV/@@download/ENCFF309EAV.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF062XRQ bed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF070TRR, ENCFF387UYW, ENCFF451HLI, ENCFF999TAG 2577232 ENCODE Processing Pipeline 70f95dc4e4299a0b672626c4e8506be6 https://www.encodeproject.org/files/ENCFF062XRQ/@@download/ENCFF062XRQ.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF780DHE bigWig fold change over control ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF387UYW, ENCFF451HLI, ENCFF999TAG 501839047 ENCODE Processing Pipeline f1deecfc282e888ce6db76660cb628e2 https://www.encodeproject.org/files/ENCFF780DHE/@@download/ENCFF780DHE.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF588JVO bigWig fold change over control ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF070TRR, ENCFF387UYW, ENCFF451HLI, ENCFF999TAG 745402075 ENCODE Processing Pipeline bdd2b7d6bdf6dde2deb76b7736575c45 https://www.encodeproject.org/files/ENCFF588JVO/@@download/ENCFF588JVO.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF281PKL bed narrowPeak replicated peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF062XRQ, ENCFF289TSU, ENCFF309EAV 2104393 ENCODE Processing Pipeline 7010276e08e763b71097931c349a8351 https://www.encodeproject.org/files/ENCFF281PKL/@@download/ENCFF281PKL.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF991SBL bigBed narrowPeak replicated peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF281PKL 3734808 ENCODE Processing Pipeline b5955cc52355f265ed4c649169715c42 https://www.encodeproject.org/files/ENCFF991SBL/@@download/ENCFF991SBL.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF152XDT bam unfiltered alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHU, ENCFF018NEO, ENCFF985XHS 1640668618 ENCODE Processing Pipeline 296be4c8ae51394fd2eb0a36e844f471 https://www.encodeproject.org/files/ENCFF152XDT/@@download/ENCFF152XDT.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF478FCP bam unfiltered alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHX, ENCFF018NEO 1436802437 ENCODE Processing Pipeline 3d2c179f3f954a170bdc0c66ab4a38ea https://www.encodeproject.org/files/ENCFF478FCP/@@download/ENCFF478FCP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF829KJG bam alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHU, ENCFF018NEO, ENCFF985XHS 1114847057 ENCODE Processing Pipeline c6115a2e08b57afa0fc0155b007493e0 https://www.encodeproject.org/files/ENCFF829KJG/@@download/ENCFF829KJG.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF145CIM bam alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHX, ENCFF018NEO 999073614 ENCODE Processing Pipeline 62ee98462f98c58a0d097e7afd2526ec https://www.encodeproject.org/files/ENCFF145CIM/@@download/ENCFF145CIM.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF686PDT bed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF145CIM, ENCFF446WFN 2952734 ENCODE Processing Pipeline f6ff5259b38f7d28ae1ee64a33140751 https://www.encodeproject.org/files/ENCFF686PDT/@@download/ENCFF686PDT.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF946YWM bigBed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF092XRT 5273888 ENCODE Processing Pipeline 72ef1c5ea0d67d75b530729c75b224f0 https://www.encodeproject.org/files/ENCFF946YWM/@@download/ENCFF946YWM.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF835SPV bed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF829KJG 2189761 ENCODE Processing Pipeline 15a3af72e6d62764ed8240e93ac4372d https://www.encodeproject.org/files/ENCFF835SPV/@@download/ENCFF835SPV.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF092XRT bed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF145CIM, ENCFF446WFN, ENCFF829KJG 2508192 ENCODE Processing Pipeline 50f720280dea5775190f85cee8d46b41 https://www.encodeproject.org/files/ENCFF092XRT/@@download/ENCFF092XRT.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF063YPR bigWig signal p-value ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF829KJG 417096077 ENCODE Processing Pipeline f979ecc4383e85b76180458980a32d6c https://www.encodeproject.org/files/ENCFF063YPR/@@download/ENCFF063YPR.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF131MCI bigBed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF835SPV 4939368 ENCODE Processing Pipeline 8ecf470a298b55ee8e6faefc5a283632 https://www.encodeproject.org/files/ENCFF131MCI/@@download/ENCFF131MCI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF082YMT bigBed narrowPeak peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF686PDT 6181592 ENCODE Processing Pipeline 2ca0dcfd8a148da370b6a819f1a16717 https://www.encodeproject.org/files/ENCFF082YMT/@@download/ENCFF082YMT.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF950KMG bigWig signal p-value ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF145CIM, ENCFF446WFN 438835718 ENCODE Processing Pipeline c33d35bf37806d5db986aa2a20ab029b https://www.encodeproject.org/files/ENCFF950KMG/@@download/ENCFF950KMG.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF578YSJ bigWig signal p-value ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF145CIM, ENCFF446WFN, ENCFF829KJG 620715410 ENCODE Processing Pipeline 987d1253b2aeb6e527d60004be64f210 https://www.encodeproject.org/files/ENCFF578YSJ/@@download/ENCFF578YSJ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF359WIF bigWig fold change over control ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF032AWP, ENCFF145CIM, ENCFF446WFN 432329593 ENCODE Processing Pipeline 638e407aba547f641d4a8670d3515d27 https://www.encodeproject.org/files/ENCFF359WIF/@@download/ENCFF359WIF.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF218KXY bigWig fold change over control ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF032AWP, ENCFF446WFN, ENCFF829KJG 493222852 ENCODE Processing Pipeline 054e19879c0cf71d11aeb240cab38daa https://www.encodeproject.org/files/ENCFF218KXY/@@download/ENCFF218KXY.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133NGW bigWig fold change over control ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF032AWP, ENCFF145CIM, ENCFF446WFN, ENCFF829KJG 744498527 ENCODE Processing Pipeline 97239694c400998a46b63ae1faaf2492 https://www.encodeproject.org/files/ENCFF133NGW/@@download/ENCFF133NGW.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF760WJY bed narrowPeak replicated peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF092XRT, ENCFF686PDT, ENCFF835SPV 2024763 ENCODE Processing Pipeline d20b895e23ead53466e88c0cd03baa95 https://www.encodeproject.org/files/ENCFF760WJY/@@download/ENCFF760WJY.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF332SBD bigBed narrowPeak replicated peaks ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF760WJY 3595963 ENCODE Processing Pipeline c7a2dd60dd8a466568d24a9a34aa1b84 https://www.encodeproject.org/files/ENCFF332SBD/@@download/ENCFF332SBD.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002BGP fastq reads ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 896963237 Bing Ren, UCSD 859dcaf8a0db1508cc00c4a4b53d5f36 SRA:SRR3652750 https://www.encodeproject.org/files/ENCFF002BGP/@@download/ENCFF002BGP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQY/ released low read length, antibody characterized with exemption, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002BGW fastq reads ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1555009973 Bing Ren, UCSD 6fb260775d16956383831b04ea6b0e0e SRA:SRR3652749 https://www.encodeproject.org/files/ENCFF002BGW/@@download/ENCFF002BGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARA/ released low read length, antibody characterized with exemption, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF176WQM bam alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002BGW, ENCFF806TVZ 1309308106 ENCODE Processing Pipeline 6d091fefb849ddff39ab0afd6a2bf560 https://www.encodeproject.org/files/ENCFF176WQM/@@download/ENCFF176WQM.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF979SCL fastq reads ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 482677471 Bing Ren, UCSD 46b7f6323172ab05cd85dedafb63d100 SRA:SRR3652751 https://www.encodeproject.org/files/ENCFF979SCL/@@download/ENCFF979SCL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQY/ released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF884VAX bam alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002BGP, ENCFF806TVZ, ENCFF979SCL 1358084737 ENCODE Processing Pipeline 671dd06397677ea63ccaaadd7d054b2d https://www.encodeproject.org/files/ENCFF884VAX/@@download/ENCFF884VAX.bam mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF699ZZX bed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF884VAX 1720072 ENCODE Processing Pipeline 4e068dc6c169773849d35aea7f313aec https://www.encodeproject.org/files/ENCFF699ZZX/@@download/ENCFF699ZZX.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF583DXB bigWig signal p-value ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF884VAX 570459792 ENCODE Processing Pipeline 785af04244a09c1e4bfe3be494c99c8d https://www.encodeproject.org/files/ENCFF583DXB/@@download/ENCFF583DXB.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF234ONT bed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF176WQM, ENCFF184XIW 1995837 ENCODE Processing Pipeline 9d28ca2584c9b8bb1e9ce2db1bc04661 https://www.encodeproject.org/files/ENCFF234ONT/@@download/ENCFF234ONT.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF368WBA bigBed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF234ONT 4444545 ENCODE Processing Pipeline c478b5278d52c8aba7e80c85fbcab0de https://www.encodeproject.org/files/ENCFF368WBA/@@download/ENCFF368WBA.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF276XPR bed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175WRM, ENCFF176WQM, ENCFF184XIW, ENCFF884VAX 2718894 ENCODE Processing Pipeline 84c480028b1c4228574f039f1be7182a https://www.encodeproject.org/files/ENCFF276XPR/@@download/ENCFF276XPR.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF863AOT bigBed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF699ZZX 3763922 ENCODE Processing Pipeline 4f92a3964f72b2a92aa274140c383b0b https://www.encodeproject.org/files/ENCFF863AOT/@@download/ENCFF863AOT.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF846YLZ bigBed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF276XPR 5631465 ENCODE Processing Pipeline 45834abf1fbb10aa9aa1955133d31c67 https://www.encodeproject.org/files/ENCFF846YLZ/@@download/ENCFF846YLZ.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF842AJI bigWig signal p-value ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF176WQM, ENCFF184XIW 659918602 ENCODE Processing Pipeline 0265ac9208cbf8a84e8bf5ff1b23c7f4 https://www.encodeproject.org/files/ENCFF842AJI/@@download/ENCFF842AJI.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF626ZBH bigWig signal p-value ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175WRM, ENCFF176WQM, ENCFF184XIW, ENCFF884VAX 835033481 ENCODE Processing Pipeline d4e1846aca2325b73caadc8738a05897 https://www.encodeproject.org/files/ENCFF626ZBH/@@download/ENCFF626ZBH.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF831TYC bigWig fold change over control ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF884VAX 623156740 ENCODE Processing Pipeline fd978cfb22ad22dd7b52c28bcb274335 https://www.encodeproject.org/files/ENCFF831TYC/@@download/ENCFF831TYC.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF274XZB bigWig fold change over control ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF176WQM, ENCFF184XIW 636182174 ENCODE Processing Pipeline 7cdb7fcdc91609c90e391d5c91e42fe9 https://www.encodeproject.org/files/ENCFF274XZB/@@download/ENCFF274XZB.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF766HCT bigWig fold change over control ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175WRM, ENCFF176WQM, ENCFF184XIW, ENCFF884VAX 923243581 ENCODE Processing Pipeline 7c99098496078d0fc471b083e6ce848d https://www.encodeproject.org/files/ENCFF766HCT/@@download/ENCFF766HCT.bigWig mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF452NRU bed narrowPeak replicated peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF234ONT, ENCFF276XPR, ENCFF699ZZX 1279974 ENCODE Processing Pipeline 9a51df5d0f294bd298567d72f67c53d8 https://www.encodeproject.org/files/ENCFF452NRU/@@download/ENCFF452NRU.bed.gz mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF641JZL bigBed narrowPeak replicated peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF452NRU 2482772 ENCODE Processing Pipeline 0d38ddb0380df6c6b892f20649f607a1 https://www.encodeproject.org/files/ENCFF641JZL/@@download/ENCFF641JZL.bigBed mm10-minimal archived low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF935ZVF bam unfiltered alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGP, ENCFF018NEO, ENCFF979SCL 1678829771 ENCODE Processing Pipeline 04eb7b4ca104d305ade4aa23fddc175c https://www.encodeproject.org/files/ENCFF935ZVF/@@download/ENCFF935ZVF.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF733ZKQ bam unfiltered alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGW, ENCFF018NEO 1794047639 ENCODE Processing Pipeline 2c5aa2b96a555f5f9180da3540369c4c https://www.encodeproject.org/files/ENCFF733ZKQ/@@download/ENCFF733ZKQ.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF746MFH bam alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGP, ENCFF018NEO, ENCFF979SCL 1226645061 ENCODE Processing Pipeline 883048071f025c61c817feebf28bcbae https://www.encodeproject.org/files/ENCFF746MFH/@@download/ENCFF746MFH.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF831WZT bam alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGW, ENCFF018NEO 1309032668 ENCODE Processing Pipeline 9e3d0bacb7049afe3bd91ed7888e2ca4 https://www.encodeproject.org/files/ENCFF831WZT/@@download/ENCFF831WZT.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF762OKL bed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF746MFH 1645204 ENCODE Processing Pipeline 3c1de005eb603f17546d6e132a0e9fbd https://www.encodeproject.org/files/ENCFF762OKL/@@download/ENCFF762OKL.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF998DLX bed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF831WZT 1851415 ENCODE Processing Pipeline 98fa2a8d1c75ed61077d8e6195217db0 https://www.encodeproject.org/files/ENCFF998DLX/@@download/ENCFF998DLX.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF597CDG bed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF746MFH, ENCFF831WZT 2024938 ENCODE Processing Pipeline 08dd9aab6fbe7070db1949ef4a65ed4e https://www.encodeproject.org/files/ENCFF597CDG/@@download/ENCFF597CDG.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF169FQR bigBed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF762OKL 3673819 ENCODE Processing Pipeline ee1ae1152db8f422fd0bcb2a792399fd https://www.encodeproject.org/files/ENCFF169FQR/@@download/ENCFF169FQR.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF055EZA bigBed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF998DLX 4263109 ENCODE Processing Pipeline a17a13321c2cd1f72fe5ba3fcd579d97 https://www.encodeproject.org/files/ENCFF055EZA/@@download/ENCFF055EZA.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF261YYF bigBed narrowPeak peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF597CDG 4436526 ENCODE Processing Pipeline 1f248eee25ea9d7606693b274e8f606a https://www.encodeproject.org/files/ENCFF261YYF/@@download/ENCFF261YYF.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF998PJX bigWig signal p-value ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF746MFH 661540135 ENCODE Processing Pipeline 894acdd344f840b294510868f84f08ed https://www.encodeproject.org/files/ENCFF998PJX/@@download/ENCFF998PJX.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF828PBY bigWig signal p-value ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF831WZT 655535119 ENCODE Processing Pipeline 836a25aae1008b1c6b6af777a725f3cb https://www.encodeproject.org/files/ENCFF828PBY/@@download/ENCFF828PBY.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF233UNG bigWig signal p-value ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF746MFH, ENCFF831WZT 971350937 ENCODE Processing Pipeline dacde2c2236bc4afc92f5958579d4f06 https://www.encodeproject.org/files/ENCFF233UNG/@@download/ENCFF233UNG.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF975OTJ bigWig fold change over control ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF746MFH 653877031 ENCODE Processing Pipeline 4c88ba743bbffb2c69303ff6fd8bfed4 https://www.encodeproject.org/files/ENCFF975OTJ/@@download/ENCFF975OTJ.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF354HEI bigWig fold change over control ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF831WZT 688588760 ENCODE Processing Pipeline de92c53542b0dc0f3d8ba310736039a6 https://www.encodeproject.org/files/ENCFF354HEI/@@download/ENCFF354HEI.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF317OTS bigWig fold change over control ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF746MFH, ENCFF831WZT 999491443 ENCODE Processing Pipeline 97c4931ac69155b08b79d8c21dec4241 https://www.encodeproject.org/files/ENCFF317OTS/@@download/ENCFF317OTS.bigWig mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF982NQH bed narrowPeak replicated peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF597CDG, ENCFF762OKL, ENCFF998DLX 1217199 ENCODE Processing Pipeline 773a59274090456e757a7353f3396d02 https://www.encodeproject.org/files/ENCFF982NQH/@@download/ENCFF982NQH.bed.gz mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF014LXI bigBed narrowPeak replicated peaks ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF982NQH 2386359 ENCODE Processing Pipeline 30006bc6152c31f4540d2b7758e6a953 https://www.encodeproject.org/files/ENCFF014LXI/@@download/ENCFF014LXI.bigBed mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AMT fastq reads ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 727830682 Bing Ren, UCSD abf93482c23839b89bb0cee1794ad9c3 SRA:SRR3651376 https://www.encodeproject.org/files/ENCFF002AMT/@@download/ENCFF002AMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQO/ released mixed read lengths, low read length, control low read depth, inconsistent control read length, low read depth sequencing runs labeled as technical replicates ENCFF002ANC fastq reads ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1452267496 Bing Ren, UCSD 4141d7f91f8863125d53e6abca16a7e3 SRA:SRR3651378 https://www.encodeproject.org/files/ENCFF002ANC/@@download/ENCFF002ANC.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQL/ released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF002AMU fastq reads ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 472570209 Bing Ren, UCSD 68071d0358468413db0e47ce591e4b70 SRA:SRR3651377 https://www.encodeproject.org/files/ENCFF002AMU/@@download/ENCFF002AMU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQO/ released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF926SNR bam alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AMT, ENCFF002AMU, ENCFF806TVZ 804541851 ENCODE Processing Pipeline 55e776db17d2f69f89236a0831929935 https://www.encodeproject.org/files/ENCFF926SNR/@@download/ENCFF926SNR.bam mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF104HFY bam alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ANC, ENCFF806TVZ 862684600 ENCODE Processing Pipeline 0024877e40ba62b3ebc9ab10ac48616b https://www.encodeproject.org/files/ENCFF104HFY/@@download/ENCFF104HFY.bam mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF275ZWQ bed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF104HFY, ENCFF248DBJ, ENCFF786XLC 500711 ENCODE Processing Pipeline 87f9fc2963838a80fb5ef3bbb842815f https://www.encodeproject.org/files/ENCFF275ZWQ/@@download/ENCFF275ZWQ.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF147ZHH bed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF104HFY, ENCFF248DBJ, ENCFF786XLC, ENCFF926SNR 473368 ENCODE Processing Pipeline 560cbb166c7c7f1be70a458fc5b1c56e https://www.encodeproject.org/files/ENCFF147ZHH/@@download/ENCFF147ZHH.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF538BBL bigBed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF473VHK 1669034 ENCODE Processing Pipeline 4c2389f7f2727ce38ac54188b759d258 https://www.encodeproject.org/files/ENCFF538BBL/@@download/ENCFF538BBL.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF473VHK bed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF786XLC, ENCFF926SNR 496390 ENCODE Processing Pipeline 93d716f102f4cf6fd24d79cdc5d1211e https://www.encodeproject.org/files/ENCFF473VHK/@@download/ENCFF473VHK.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF618AUJ bigBed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147ZHH 1581114 ENCODE Processing Pipeline 067fea9a7df5360feeb75dbc2abb6b77 https://www.encodeproject.org/files/ENCFF618AUJ/@@download/ENCFF618AUJ.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF959REQ bigBed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF275ZWQ 1645910 ENCODE Processing Pipeline 2e35085822af8c3d4306220e4f8fe604 https://www.encodeproject.org/files/ENCFF959REQ/@@download/ENCFF959REQ.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF499OJU bigWig signal p-value ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF786XLC, ENCFF926SNR 282620550 ENCODE Processing Pipeline 18eb51e7c59f19ba7058ec96d48f44b9 https://www.encodeproject.org/files/ENCFF499OJU/@@download/ENCFF499OJU.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF980HUU bigWig signal p-value ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF104HFY, ENCFF248DBJ, ENCFF786XLC 408103677 ENCODE Processing Pipeline 46b3f1fc4446c11a0726ddaad374b2ee https://www.encodeproject.org/files/ENCFF980HUU/@@download/ENCFF980HUU.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF379ZUK bigWig signal p-value ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF104HFY, ENCFF248DBJ, ENCFF786XLC, ENCFF926SNR 565752238 ENCODE Processing Pipeline 38ea38ebfbae80ea9be11e89a59fe62c https://www.encodeproject.org/files/ENCFF379ZUK/@@download/ENCFF379ZUK.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF796HIA bigWig fold change over control ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF786XLC, ENCFF926SNR 282858291 ENCODE Processing Pipeline d6d082b94a5d75c10d482d83257fd329 https://www.encodeproject.org/files/ENCFF796HIA/@@download/ENCFF796HIA.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF883IWH bigWig fold change over control ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF104HFY, ENCFF248DBJ, ENCFF786XLC 366244495 ENCODE Processing Pipeline db8997a0f6488fba6468d4f160a3d94a https://www.encodeproject.org/files/ENCFF883IWH/@@download/ENCFF883IWH.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF518HZX bigWig fold change over control ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF104HFY, ENCFF248DBJ, ENCFF786XLC, ENCFF926SNR 561312835 ENCODE Processing Pipeline 0bc84cdafbeac09ba519d641410c3fc5 https://www.encodeproject.org/files/ENCFF518HZX/@@download/ENCFF518HZX.bigWig mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF546JDM bed narrowPeak replicated peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF147ZHH, ENCFF275ZWQ, ENCFF473VHK 548511 ENCODE Processing Pipeline 1f09d1f5c967c1a6f5b282cac56fadb8 https://www.encodeproject.org/files/ENCFF546JDM/@@download/ENCFF546JDM.bed.gz mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF629UHR bigBed narrowPeak replicated peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF546JDM 1407668 ENCODE Processing Pipeline a068bc0ef29d5e1056a9171952e65379 https://www.encodeproject.org/files/ENCFF629UHR/@@download/ENCFF629UHR.bigBed mm10-minimal archived mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF698FVO bam unfiltered alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMT, ENCFF002AMU, ENCFF018NEO 1152778811 ENCODE Processing Pipeline 6801698f131c9eaacf1d4d23cad09f76 https://www.encodeproject.org/files/ENCFF698FVO/@@download/ENCFF698FVO.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF141NMF bam unfiltered alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANC, ENCFF018NEO 1461250539 ENCODE Processing Pipeline 0e26118033c92290a9dcffd3fcd25f9a https://www.encodeproject.org/files/ENCFF141NMF/@@download/ENCFF141NMF.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF224AIG bam alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMT, ENCFF002AMU, ENCFF018NEO 711262349 ENCODE Processing Pipeline b7a85651cbcb3504e30ee1339f157aae https://www.encodeproject.org/files/ENCFF224AIG/@@download/ENCFF224AIG.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF989GSB bam alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANC, ENCFF018NEO 862469134 ENCODE Processing Pipeline 6fb8c7569f36661bb607214fd552d074 https://www.encodeproject.org/files/ENCFF989GSB/@@download/ENCFF989GSB.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF434NRJ bed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224AIG, ENCFF424QZD 472899 ENCODE Processing Pipeline 5dd31fedd3e7a0c26c5fa07be8ebae4c https://www.encodeproject.org/files/ENCFF434NRJ/@@download/ENCFF434NRJ.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF423LEZ bed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224AIG, ENCFF424QZD, ENCFF767URV, ENCFF989GSB 480926 ENCODE Processing Pipeline 369720d1b6b4d076ae1da9bd06653a7c https://www.encodeproject.org/files/ENCFF423LEZ/@@download/ENCFF423LEZ.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF600JRK bed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF424QZD, ENCFF767URV, ENCFF989GSB 507077 ENCODE Processing Pipeline 18224c232f6c51dd78fac2f84db056b5 https://www.encodeproject.org/files/ENCFF600JRK/@@download/ENCFF600JRK.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF134THA bigBed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF434NRJ 1602468 ENCODE Processing Pipeline 090e95946f5d0775dc590586fe983b8f https://www.encodeproject.org/files/ENCFF134THA/@@download/ENCFF134THA.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF527NUF bigBed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF600JRK 1660853 ENCODE Processing Pipeline ab694912f25a1a5fa52454201cf96a0a https://www.encodeproject.org/files/ENCFF527NUF/@@download/ENCFF527NUF.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF361FOD bigBed narrowPeak peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF423LEZ 1593002 ENCODE Processing Pipeline 2db8d404a9193139f0b1b942031fddac https://www.encodeproject.org/files/ENCFF361FOD/@@download/ENCFF361FOD.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF847ISZ bigWig signal p-value ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224AIG, ENCFF424QZD 294825674 ENCODE Processing Pipeline 6b6bfd4e5adcfd3db78b0e65834bc361 https://www.encodeproject.org/files/ENCFF847ISZ/@@download/ENCFF847ISZ.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF267LJP bigWig signal p-value ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF424QZD, ENCFF767URV, ENCFF989GSB 397463862 ENCODE Processing Pipeline 945b24126a74958bea54250a7685fccc https://www.encodeproject.org/files/ENCFF267LJP/@@download/ENCFF267LJP.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF885OCM bigWig signal p-value ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224AIG, ENCFF424QZD, ENCFF767URV, ENCFF989GSB 568487188 ENCODE Processing Pipeline 2c0a1c3e0c12e57985bbfaaed8f6b151 https://www.encodeproject.org/files/ENCFF885OCM/@@download/ENCFF885OCM.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF143AFH bigWig fold change over control ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF224AIG, ENCFF424QZD 280665665 ENCODE Processing Pipeline ddf76c594dac67b5bdaad4eaa1a89f6d https://www.encodeproject.org/files/ENCFF143AFH/@@download/ENCFF143AFH.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF764VUG bigWig fold change over control ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF424QZD, ENCFF767URV, ENCFF989GSB 370803546 ENCODE Processing Pipeline 660ccdf4e6331b81288ef092e3529cdc https://www.encodeproject.org/files/ENCFF764VUG/@@download/ENCFF764VUG.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF229GJB bigWig fold change over control ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF224AIG, ENCFF424QZD, ENCFF767URV, ENCFF989GSB 565162575 ENCODE Processing Pipeline d59fa451601b2d6bf0b7155d9d9c0edf https://www.encodeproject.org/files/ENCFF229GJB/@@download/ENCFF229GJB.bigWig mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF098IOA bed narrowPeak replicated peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF423LEZ, ENCFF434NRJ, ENCFF600JRK 553173 ENCODE Processing Pipeline 84a0cd3091b7e2b0ef6092cc05792ee4 https://www.encodeproject.org/files/ENCFF098IOA/@@download/ENCFF098IOA.bed.gz mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF415GAA bigBed narrowPeak replicated peaks ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF098IOA 1411270 ENCODE Processing Pipeline 8e1ee5f50a72cd4003c264570ddae33b https://www.encodeproject.org/files/ENCFF415GAA/@@download/ENCFF415GAA.bigBed mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF414TSQ fastq reads ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2578408088 Bing Ren, UCSD b9cd36f43ab50c32f41d1b861db7fe83 SRA:SRR3653406 https://www.encodeproject.org/files/ENCFF414TSQ/@@download/ENCFF414TSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF835CWG/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF523XWQ fastq reads ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2599845201 Bing Ren, UCSD e2b0701cd0dcbc15990ae7d6877a7a80 SRA:SRR3653407 https://www.encodeproject.org/files/ENCFF523XWQ/@@download/ENCFF523XWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF223XHF/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF967ZBU bam alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF523XWQ, ENCFF806TVZ 2053284370 ENCODE Processing Pipeline ac95002391f2ea1594db1bb2a3b98818 https://www.encodeproject.org/files/ENCFF967ZBU/@@download/ENCFF967ZBU.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF152QZZ bam alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF414TSQ, ENCFF806TVZ 1767749055 ENCODE Processing Pipeline 11cf05d06f6003433aa1d497280c78af https://www.encodeproject.org/files/ENCFF152QZZ/@@download/ENCFF152QZZ.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF400ZSB bigBed narrowPeak peaks ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF721ENU 3988954 ENCODE Processing Pipeline 534aa3fb7e047085e58d55a6cb2b9faf https://www.encodeproject.org/files/ENCFF400ZSB/@@download/ENCFF400ZSB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF998HXY bed narrowPeak peaks ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF152QZZ, ENCFF263OMS, ENCFF667WJC 1598237 ENCODE Processing Pipeline d13cdd58e2f253bc68ac94cde11605ec https://www.encodeproject.org/files/ENCFF998HXY/@@download/ENCFF998HXY.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF573YCE bed narrowPeak peaks ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF152QZZ, ENCFF263OMS, ENCFF667WJC, ENCFF967ZBU 2065874 ENCODE Processing Pipeline 58d13e2d5d89c7ac3918efe32738f435 https://www.encodeproject.org/files/ENCFF573YCE/@@download/ENCFF573YCE.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF721ENU bed narrowPeak peaks ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF667WJC, ENCFF967ZBU 1799422 ENCODE Processing Pipeline e04c0a94be09cbc12c018f6931061041 https://www.encodeproject.org/files/ENCFF721ENU/@@download/ENCFF721ENU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF266ALX bigBed narrowPeak peaks ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF998HXY 3604534 ENCODE Processing Pipeline f91733174db700fcdad7cb0eb3725f02 https://www.encodeproject.org/files/ENCFF266ALX/@@download/ENCFF266ALX.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF173RBS bigBed narrowPeak peaks ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF573YCE 5687143 ENCODE Processing Pipeline d9fa394f564d0c7d6eb2d35047bf2821 https://www.encodeproject.org/files/ENCFF173RBS/@@download/ENCFF173RBS.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF644KCJ bigWig signal p-value ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF263OMS, ENCFF667WJC, ENCFF967ZBU 806432779 ENCODE Processing Pipeline b579aa402331e91b6591eaa1fca4527a https://www.encodeproject.org/files/ENCFF644KCJ/@@download/ENCFF644KCJ.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF397LLK bigWig signal p-value ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF152QZZ, ENCFF263OMS, ENCFF667WJC 631720156 ENCODE Processing Pipeline 003fd7b134642bc716e8bcbd14c9f1f0 https://www.encodeproject.org/files/ENCFF397LLK/@@download/ENCFF397LLK.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF630YEQ bigWig signal p-value ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF152QZZ, ENCFF263OMS, ENCFF667WJC, ENCFF967ZBU 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library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF230KUA bed narrowPeak replicated peaks ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF573YCE, ENCFF721ENU, ENCFF998HXY 1361359 ENCODE Processing Pipeline c52c6819253b3fde06b95d26e8dd9b54 https://www.encodeproject.org/files/ENCFF230KUA/@@download/ENCFF230KUA.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF521VDZ bam unfiltered alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF523XWQ 3068870969 ENCODE Processing Pipeline b7f742690ef9f2cc1a11e2bd93481679 https://www.encodeproject.org/files/ENCFF521VDZ/@@download/ENCFF521VDZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF953FWR bam unfiltered alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF414TSQ 2974302557 ENCODE Processing Pipeline a9dcd4fcfca5f62acd6063c09705eb65 https://www.encodeproject.org/files/ENCFF953FWR/@@download/ENCFF953FWR.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF156ZFI bam alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF523XWQ 2052854076 ENCODE Processing Pipeline 9b709e11051a4f0d0b7e51f312da66a7 https://www.encodeproject.org/files/ENCFF156ZFI/@@download/ENCFF156ZFI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF052AZF bam alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF414TSQ 1767414197 ENCODE Processing Pipeline 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moderate bottlenecking, inconsistent platforms ENCFF128AIM bigWig fold change over control ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF031OYA, ENCFF156ZFI, ENCFF514GVM 936632105 ENCODE Processing Pipeline e6572478c7f4c4aae76b608eeaef3fb0 https://www.encodeproject.org/files/ENCFF128AIM/@@download/ENCFF128AIM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF208OIZ bigWig fold change over control ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF031OYA, ENCFF052AZF, ENCFF514GVM 855867224 ENCODE Processing Pipeline 3ee5b30b1e16e6677f0c1a39ff2a7a2f https://www.encodeproject.org/files/ENCFF208OIZ/@@download/ENCFF208OIZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF199SCG bigWig fold change over control ENCSR988BRP ChIP-seq UBERON:0002101 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bottlenecking ENCFF486UZU bam alignments ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFV, ENCFF806TVZ 1178048091 ENCODE Processing Pipeline d4bac6f646868eeb98e42df361a8c40f https://www.encodeproject.org/files/ENCFF486UZU/@@download/ENCFF486UZU.bam mm10-minimal archived mild to moderate bottlenecking ENCFF300MAF bam alignments ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFR, ENCFF806TVZ 1310971489 ENCODE Processing Pipeline 96cb873483d0c7e3cf6270d852170b6c https://www.encodeproject.org/files/ENCFF300MAF/@@download/ENCFF300MAF.bam mm10-minimal archived mild to moderate bottlenecking ENCFF864ZQZ bed narrowPeak peaks ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF486UZU 1215075 ENCODE Processing Pipeline a6c24c7d3461ba216051ea9db73b8510 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ENCFF466ZUZ bigWig signal p-value ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF300MAF 623600052 ENCODE Processing Pipeline 2dbd7a44774ca0dcdfb196641dd1fb3e https://www.encodeproject.org/files/ENCFF466ZUZ/@@download/ENCFF466ZUZ.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF958IRO bigWig signal p-value ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF486UZU 487983264 ENCODE Processing Pipeline 22ab02a5b41e19fe99074baf689ae4df https://www.encodeproject.org/files/ENCFF958IRO/@@download/ENCFF958IRO.bigWig mm10-minimal archived mild to moderate bottlenecking ENCFF297QHW bigWig signal p-value ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175WRM, ENCFF184XIW, ENCFF300MAF, ENCFF486UZU 665335835 ENCODE Processing 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ENCFF023ZTU bam alignments ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANL, ENCFF018NEO 643246532 ENCODE Processing Pipeline e6387ccf0574fef743f0fddb930fdacd https://www.encodeproject.org/files/ENCFF023ZTU/@@download/ENCFF023ZTU.bam mm10 released low read length, low read depth ENCFF650OMY bed narrowPeak peaks ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF023ZTU, ENCFF190RFD, ENCFF523XKB 540713 ENCODE Processing Pipeline 2c3c8eb5fc4eb6ba86efc23c9e3926f9 https://www.encodeproject.org/files/ENCFF650OMY/@@download/ENCFF650OMY.bed.gz mm10 released low read length, low read depth ENCFF847YTV bed narrowPeak peaks ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF427XVM, ENCFF523XKB 543109 ENCODE Processing Pipeline e86cd8b5367b6d0e9e26fdea05a34139 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2014-06-30 ENCODE 2 ENCFF847YTV 1812390 ENCODE Processing Pipeline 36caddb1419daa7c838f2806deb843a7 https://www.encodeproject.org/files/ENCFF257ORD/@@download/ENCFF257ORD.bigBed mm10 released low read length, low read depth ENCFF922DGF bigBed narrowPeak peaks ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF758SAK 1803939 ENCODE Processing Pipeline 3e661132cca2695addc23550960298ec https://www.encodeproject.org/files/ENCFF922DGF/@@download/ENCFF922DGF.bigBed mm10 released low read length, low read depth ENCFF437JHB bigWig signal p-value ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF023ZTU, ENCFF190RFD, ENCFF523XKB 496213339 ENCODE Processing Pipeline 55868b3a5937b13da2668dd5b4313489 https://www.encodeproject.org/files/ENCFF437JHB/@@download/ENCFF437JHB.bigWig mm10 released low read length, low read depth ENCFF995NIM bigWig signal p-value ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF427XVM, ENCFF523XKB 500425466 ENCODE Processing Pipeline e4e88c5e9f313bd9794f871ff1698bb7 https://www.encodeproject.org/files/ENCFF995NIM/@@download/ENCFF995NIM.bigWig mm10 released low read length, low read depth ENCFF926CET bigWig signal p-value ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF023ZTU, ENCFF190RFD, ENCFF427XVM, ENCFF523XKB 616413216 ENCODE Processing Pipeline 37fdaa50c54f7be3800e771e2dae8980 https://www.encodeproject.org/files/ENCFF926CET/@@download/ENCFF926CET.bigWig mm10 released low read length, low read depth ENCFF646PYU bigWig fold change over control ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF023ZTU, ENCFF190RFD, ENCFF523XKB 446689651 ENCODE Processing Pipeline eaa2998ebd4be32754cead9466250eb8 https://www.encodeproject.org/files/ENCFF646PYU/@@download/ENCFF646PYU.bigWig mm10 released low read length, low read depth ENCFF857NAL bigWig fold change over control ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF190RFD, ENCFF427XVM, ENCFF523XKB 426536203 ENCODE Processing Pipeline 34f7cca2d2ab685378f8630a4942f79f https://www.encodeproject.org/files/ENCFF857NAL/@@download/ENCFF857NAL.bigWig mm10 released low read length, low read depth ENCFF376RQB bigWig fold change over control ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF023ZTU, ENCFF190RFD, ENCFF427XVM, ENCFF523XKB 665308824 ENCODE Processing Pipeline fbffcf5d0f11534c90e575102fca52a3 https://www.encodeproject.org/files/ENCFF376RQB/@@download/ENCFF376RQB.bigWig mm10 released low read length, low read depth ENCFF625FPF bed narrowPeak replicated peaks ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF650OMY, ENCFF758SAK, ENCFF847YTV 607227 ENCODE Processing Pipeline 5331c8bed9ec79dcbedaf0ecdf5a0a98 https://www.encodeproject.org/files/ENCFF625FPF/@@download/ENCFF625FPF.bed.gz mm10 released low read length, low read depth ENCFF330UDC bigBed narrowPeak replicated peaks ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF625FPF 1514220 ENCODE Processing Pipeline 13366dd27b392dbf854d5f0d9c440da1 https://www.encodeproject.org/files/ENCFF330UDC/@@download/ENCFF330UDC.bigBed mm10 released low read length, low read depth ENCFF001KDC bam alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KDM 1402770008 Bing Ren, UCSD de481ea79dc6ea7330ff1d7676a36337 https://www.encodeproject.org/files/ENCFF001KDC/@@download/ENCFF001KDC.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDD bigBed broadPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWP 1076279 Bing Ren, UCSD 64e23d2caa523aa103227fe91a64bfb2 https://www.encodeproject.org/files/ENCFF001KDD/@@download/ENCFF001KDD.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDE bam alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KDP 2438398025 Bing Ren, UCSD a748ce7d394b478a35ebac93e1db12b3 https://www.encodeproject.org/files/ENCFF001KDE/@@download/ENCFF001KDE.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDG bigWig signal ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KDC, ENCFF001KDE 82982104 Bing Ren, UCSD 853bdb1efe92e3f753f6f93043020b87 https://www.encodeproject.org/files/ENCFF001KDG/@@download/ENCFF001KDG.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDM fastq reads ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 36 single-ended 1470601191 Bing Ren, UCSD 4154ed117ecbc77da48761e53e604e9e https://www.encodeproject.org/files/ENCFF001KDM/@@download/ENCFF001KDM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEX/ released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001KDP fastq reads ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 36 single-ended 2590343096 Bing Ren, UCSD 3aace1b1111aa1485a6ffb49d0be36e7 https://www.encodeproject.org/files/ENCFF001KDP/@@download/ENCFF001KDP.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEU/ released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF001XWP bed broadPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KDC, ENCFF001KDE 583839 Bing Ren, UCSD 19cec0ddd5955a77168d995982c18a77 https://www.encodeproject.org/files/ENCFF001XWP/@@download/ENCFF001XWP.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF784USX bam unfiltered alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KDM, ENCFF018NEO 1554120209 ENCODE Processing Pipeline 0ea9abef24ce860e7aa7f2c8002ae834 https://www.encodeproject.org/files/ENCFF784USX/@@download/ENCFF784USX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF124DDW bam alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KDM, ENCFF018NEO 362296223 ENCODE Processing Pipeline dd6ae80995483f7f1f1b1cd274f1bf8c https://www.encodeproject.org/files/ENCFF124DDW/@@download/ENCFF124DDW.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF275LJR bam unfiltered alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KDP, ENCFF018NEO 2663914034 ENCODE Processing Pipeline 7219bc978d15a474426d08896a431020 https://www.encodeproject.org/files/ENCFF275LJR/@@download/ENCFF275LJR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF120WWC bam alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KDP, ENCFF018NEO 494378595 ENCODE Processing Pipeline 56e1b12cd52ec4f0320906efa2767fad https://www.encodeproject.org/files/ENCFF120WWC/@@download/ENCFF120WWC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF510KRN bigBed narrowPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF134DBR 4517211 ENCODE Processing Pipeline 3a869f3bec6b4e590d437f0e637b33f7 https://www.encodeproject.org/files/ENCFF510KRN/@@download/ENCFF510KRN.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF222JCD bed narrowPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF124DDW, ENCFF439WCI, ENCFF683TKC 1382048 ENCODE Processing Pipeline 4832740af78d1024b370924d5bda8a7d https://www.encodeproject.org/files/ENCFF222JCD/@@download/ENCFF222JCD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF237XWL bed narrowPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF120WWC, ENCFF124DDW, ENCFF439WCI, ENCFF683TKC 2368320 ENCODE Processing Pipeline 162b6a94d2c2cbc820ad58d82c426499 https://www.encodeproject.org/files/ENCFF237XWL/@@download/ENCFF237XWL.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF134DBR bed narrowPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF120WWC, ENCFF439WCI, ENCFF683TKC 2235793 ENCODE Processing Pipeline b4349e4788e974e779f6aa2ce4ba68d7 https://www.encodeproject.org/files/ENCFF134DBR/@@download/ENCFF134DBR.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF795KPF bigBed narrowPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF222JCD 2989372 ENCODE Processing Pipeline b5e2ea30cd6c2c6e4397b78044908f14 https://www.encodeproject.org/files/ENCFF795KPF/@@download/ENCFF795KPF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF869VXH bigBed narrowPeak peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF237XWL 5691747 ENCODE Processing Pipeline df8ab0eb624ad62a25957867c1429ec1 https://www.encodeproject.org/files/ENCFF869VXH/@@download/ENCFF869VXH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF906NMA bigWig signal p-value ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF120WWC, ENCFF439WCI, ENCFF683TKC 374016579 ENCODE Processing Pipeline 4785b90484827fa7512be4fa96676fc6 https://www.encodeproject.org/files/ENCFF906NMA/@@download/ENCFF906NMA.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF811GOZ bigWig signal p-value ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF124DDW, ENCFF439WCI, ENCFF683TKC 319630518 ENCODE Processing Pipeline beebaecb488f0c931343a1b4f3791aee https://www.encodeproject.org/files/ENCFF811GOZ/@@download/ENCFF811GOZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF284JNC bigWig fold change over control ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF120WWC, ENCFF439WCI, ENCFF683TKC 236241339 ENCODE Processing Pipeline ee346defc9dfd5e1d8f06f704e1a17a1 https://www.encodeproject.org/files/ENCFF284JNC/@@download/ENCFF284JNC.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF872YDS bigWig signal p-value ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF120WWC, ENCFF124DDW, ENCFF439WCI, ENCFF683TKC 508024298 ENCODE Processing Pipeline b7c1c2c8161071650011a631905483c5 https://www.encodeproject.org/files/ENCFF872YDS/@@download/ENCFF872YDS.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF857TIJ bigWig fold change over control ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF120WWC, ENCFF124DDW, ENCFF439WCI, ENCFF683TKC 364539143 ENCODE Processing Pipeline 0109eee78aa1d0657875e80c6f998f9d https://www.encodeproject.org/files/ENCFF857TIJ/@@download/ENCFF857TIJ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF140OMM bigWig fold change over control ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF124DDW, ENCFF439WCI, ENCFF683TKC 185734698 ENCODE Processing Pipeline 392e35d3122176948a0feb68e5789f7f https://www.encodeproject.org/files/ENCFF140OMM/@@download/ENCFF140OMM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF133QCX bigBed narrowPeak replicated peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF834MWI 1949771 ENCODE Processing Pipeline e05e593ddcca7cecbfd01c61c07db68d https://www.encodeproject.org/files/ENCFF133QCX/@@download/ENCFF133QCX.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF834MWI bed narrowPeak replicated peaks ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF134DBR, ENCFF222JCD, ENCFF237XWL 831266 ENCODE Processing Pipeline 01f20e5102bab99a4307c1456c423e21 https://www.encodeproject.org/files/ENCFF834MWI/@@download/ENCFF834MWI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF002AHL fastq reads ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1014970773 Bing Ren, UCSD e887b18a6df7150010245a25897c165f SRA:SRR3652607 https://www.encodeproject.org/files/ENCFF002AHL/@@download/ENCFF002AHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APV/ released low read length, mild to moderate bottlenecking, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AHO fastq reads ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1627398025 Bing Ren, UCSD 246a1303793d142ee7fe038ed2582d98 SRA:SRR3652609 https://www.encodeproject.org/files/ENCFF002AHO/@@download/ENCFF002AHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APU/ released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF581QBT bam alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHO, ENCFF806TVZ 1075991559 ENCODE Processing Pipeline 0dc5a2ddecad8d5f3c39c45dc0f7b0fb https://www.encodeproject.org/files/ENCFF581QBT/@@download/ENCFF581QBT.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF815GRU fastq reads ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 470670576 Bing Ren, UCSD 5ae86aa163342906b0aa18a3394be9ff SRA:SRR3652608 https://www.encodeproject.org/files/ENCFF815GRU/@@download/ENCFF815GRU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002APV/ released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF871WXL bam alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AHL, ENCFF806TVZ, ENCFF815GRU 1246683359 ENCODE Processing Pipeline 145292f841d2a7c0417b38f849b73fe5 https://www.encodeproject.org/files/ENCFF871WXL/@@download/ENCFF871WXL.bam mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF825YRW bed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF581QBT, ENCFF871WXL 2576672 ENCODE Processing Pipeline 60e887b18abd4678053b716a11928b34 https://www.encodeproject.org/files/ENCFF825YRW/@@download/ENCFF825YRW.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF642ZAQ bed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF871WXL 2576636 ENCODE Processing Pipeline 70818e048b6068b7802d76916579ab0d https://www.encodeproject.org/files/ENCFF642ZAQ/@@download/ENCFF642ZAQ.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF183RGC bigBed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF825YRW 5395362 ENCODE Processing Pipeline e35df99539c9811c9e8597895c829943 https://www.encodeproject.org/files/ENCFF183RGC/@@download/ENCFF183RGC.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF734NCK bed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025NCO, ENCFF228INH, ENCFF581QBT 3065109 ENCODE Processing Pipeline 3511b1d1f69abf96103fd1baec3b3a40 https://www.encodeproject.org/files/ENCFF734NCK/@@download/ENCFF734NCK.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF818AJZ bigWig signal p-value ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF871WXL 511272156 ENCODE Processing Pipeline 9db3a8bec8e447545e11658c42ffac1b https://www.encodeproject.org/files/ENCFF818AJZ/@@download/ENCFF818AJZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF363VVZ bigBed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF642ZAQ 5439671 ENCODE Processing Pipeline 7e8b01eac87d386bc416e8969023a607 https://www.encodeproject.org/files/ENCFF363VVZ/@@download/ENCFF363VVZ.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF434VPX bigWig signal p-value ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF581QBT, ENCFF871WXL 759831440 ENCODE Processing Pipeline 76ce01ab5c0850bf993a6e38959f04c1 https://www.encodeproject.org/files/ENCFF434VPX/@@download/ENCFF434VPX.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF747EBM bigWig fold change over control ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF025NCO, ENCFF228INH, ENCFF871WXL 534048589 ENCODE Processing Pipeline 8a185b89d4e11631d0c152b16111205f https://www.encodeproject.org/files/ENCFF747EBM/@@download/ENCFF747EBM.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF299PIF bed narrowPeak replicated peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF642ZAQ, ENCFF734NCK, ENCFF825YRW 2330326 ENCODE Processing Pipeline 6088d35c967a16ad837a88b29a3c4003 https://www.encodeproject.org/files/ENCFF299PIF/@@download/ENCFF299PIF.bed.gz mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF080GYA bigBed narrowPeak replicated peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF299PIF 3982976 ENCODE Processing Pipeline 03e10d62c3b7e31c95266edb9e6b3452 https://www.encodeproject.org/files/ENCFF080GYA/@@download/ENCFF080GYA.bigBed mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF577TCZ bigWig fold change over control ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025NCO, ENCFF228INH, ENCFF581QBT, ENCFF871WXL 806559818 ENCODE Processing Pipeline 286bb7db25d6acb9583d96dbd81f2115 https://www.encodeproject.org/files/ENCFF577TCZ/@@download/ENCFF577TCZ.bigWig mm10-minimal archived low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF892ZSC bam unfiltered alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHL, ENCFF018NEO, ENCFF815GRU 1576494802 ENCODE Processing Pipeline 30d5111546fa5573d4226d75c8d9bf13 https://www.encodeproject.org/files/ENCFF892ZSC/@@download/ENCFF892ZSC.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF130MTX bam unfiltered alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHO, ENCFF018NEO 1697716067 ENCODE Processing Pipeline 70c09b40381f1f6a18cbc57752ef5627 https://www.encodeproject.org/files/ENCFF130MTX/@@download/ENCFF130MTX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF972RFC bam alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHL, ENCFF018NEO, ENCFF815GRU 1129881877 ENCODE Processing Pipeline 115237fb7e9bc1336eaae81e572aee82 https://www.encodeproject.org/files/ENCFF972RFC/@@download/ENCFF972RFC.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF196YTT bam alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHO, ENCFF018NEO 1075798414 ENCODE Processing Pipeline 625d34e45a419cf53a53c4dadbd817c9 https://www.encodeproject.org/files/ENCFF196YTT/@@download/ENCFF196YTT.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF577PWQ bigBed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF218BTG 5654932 ENCODE Processing Pipeline 20572467164f71d9955bdb53dba95830 https://www.encodeproject.org/files/ENCFF577PWQ/@@download/ENCFF577PWQ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF218BTG bed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF196YTT, ENCFF396CVK 2656528 ENCODE Processing Pipeline 8cf70dc40efc14150928891ca5d9c8b2 https://www.encodeproject.org/files/ENCFF218BTG/@@download/ENCFF218BTG.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF141FVF bigWig signal p-value ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF196YTT, ENCFF396CVK 416871195 ENCODE Processing Pipeline 537929b00504ecd2e5733a00ff7e6191 https://www.encodeproject.org/files/ENCFF141FVF/@@download/ENCFF141FVF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF705UJN bigWig fold change over control ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF196YTT, ENCFF396CVK 413215080 ENCODE Processing Pipeline 89fab52e75459f1680916e9354460451 https://www.encodeproject.org/files/ENCFF705UJN/@@download/ENCFF705UJN.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF152GZF bigWig fold change over control ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF196YTT, ENCFF396CVK, ENCFF506NSJ, ENCFF972RFC 816340808 ENCODE Processing Pipeline dafd410b36ab1895c8ccf2ab96dec2a4 https://www.encodeproject.org/files/ENCFF152GZF/@@download/ENCFF152GZF.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF158FWE bed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF196YTT, ENCFF396CVK, ENCFF506NSJ, ENCFF972RFC 2655418 ENCODE Processing Pipeline c470d33d80419ef46b0893fa1e05bf1d https://www.encodeproject.org/files/ENCFF158FWE/@@download/ENCFF158FWE.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF441LCU bed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF972RFC 2626465 ENCODE Processing Pipeline 6462ff40082ac49a971d048ceff45a8d https://www.encodeproject.org/files/ENCFF441LCU/@@download/ENCFF441LCU.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF585JFJ bigBed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158FWE 5623810 ENCODE Processing Pipeline f6aa20991b1ffd4e0ffab032b5bc671a https://www.encodeproject.org/files/ENCFF585JFJ/@@download/ENCFF585JFJ.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF393GIN bigBed narrowPeak peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF441LCU 5535492 ENCODE Processing Pipeline 6b092f535e240f2f6284f001e42e5051 https://www.encodeproject.org/files/ENCFF393GIN/@@download/ENCFF393GIN.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF965HEC bigWig signal p-value ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF972RFC 581539807 ENCODE Processing Pipeline 1102b5509a4edfedf988a5a7eba58f04 https://www.encodeproject.org/files/ENCFF965HEC/@@download/ENCFF965HEC.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF483NZM bigWig fold change over control ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF396CVK, ENCFF506NSJ, ENCFF972RFC 516641281 ENCODE Processing Pipeline b84b20ed1e15e9c0e89b5790f76e4d4b https://www.encodeproject.org/files/ENCFF483NZM/@@download/ENCFF483NZM.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF648MKP bigWig signal p-value ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF196YTT, ENCFF396CVK, ENCFF506NSJ, ENCFF972RFC 763005460 ENCODE Processing Pipeline 9d3ceea03aa96a71fbaa7463cc6b59f6 https://www.encodeproject.org/files/ENCFF648MKP/@@download/ENCFF648MKP.bigWig mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF407TRS bed narrowPeak replicated peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF158FWE, ENCFF218BTG, ENCFF441LCU 2259747 ENCODE Processing Pipeline bb8df6a613e3f98921ba3a9339c58f9c https://www.encodeproject.org/files/ENCFF407TRS/@@download/ENCFF407TRS.bed.gz mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF111DBY bigBed narrowPeak replicated peaks ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF407TRS 3836390 ENCODE Processing Pipeline 663ad706c3879af1df57593d9be7580a https://www.encodeproject.org/files/ENCFF111DBY/@@download/ENCFF111DBY.bigBed mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002DSN fastq reads ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 2 36 single-ended 771412135 Bing Ren, UCSD 16c13c85031ac349a4dd991536c424e8 SRA:SRR3652238 https://www.encodeproject.org/files/ENCFF002DSN/@@download/ENCFF002DSN.fastq.gz Illumina HiSeq 4000 /files/ENCFF002AQY/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DSO fastq reads ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 1 50 single-ended 1461503498 Bing Ren, UCSD cc3181fd93e9f9e0f67c1c3341511c9b SRA:SRR3652239 https://www.encodeproject.org/files/ENCFF002DSO/@@download/ENCFF002DSO.fastq.gz Illumina HiSeq 4000 /files/ENCFF002AQY/ released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DSP fastq reads ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 2 36 single-ended 688668794 Bing Ren, UCSD 31964eaad9f5ff0294280712b5f15219 SRA:SRR3652235 https://www.encodeproject.org/files/ENCFF002DSP/@@download/ENCFF002DSP.fastq.gz Illumina HiSeq 4000 /files/ENCFF002ARA/ released low read length, inconsistent platforms, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF002DSV fastq reads ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 1 50 single-ended 1429168729 Bing Ren, UCSD 1de481d044c874fbca47052649b3100f SRA:SRR3652236 https://www.encodeproject.org/files/ENCFF002DSV/@@download/ENCFF002DSV.fastq.gz Illumina HiSeq 4000 /files/ENCFF002ARA/ released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF610APA bam alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF002DSN, ENCFF002DSO, ENCFF806TVZ 1296688785 ENCODE Processing Pipeline a7cf769bf2ce333827fc123858cb49fc https://www.encodeproject.org/files/ENCFF610APA/@@download/ENCFF610APA.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF442YRI bam alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF002DSP, ENCFF002DSV, ENCFF806TVZ 1156679328 ENCODE Processing Pipeline a90dbffc7b32418629456ca648de5c67 https://www.encodeproject.org/files/ENCFF442YRI/@@download/ENCFF442YRI.bam mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF608PTB bed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF442YRI 491125 ENCODE Processing Pipeline 22af3f001f4a7f26841a459bb32011b7 https://www.encodeproject.org/files/ENCFF608PTB/@@download/ENCFF608PTB.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF407SEX bed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF610APA 280239 ENCODE Processing Pipeline 340683d2ddd3a52940372d11ad57ca8a https://www.encodeproject.org/files/ENCFF407SEX/@@download/ENCFF407SEX.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF702FZQ bigBed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF407SEX 632936 ENCODE Processing Pipeline 04e611084fc8196075587e67ea4c1274 https://www.encodeproject.org/files/ENCFF702FZQ/@@download/ENCFF702FZQ.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF957ZMZ bigBed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF842GNU 990511 ENCODE Processing Pipeline 1340935a69c93e9b2eacefbbf8f1b67b https://www.encodeproject.org/files/ENCFF957ZMZ/@@download/ENCFF957ZMZ.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF824PPC bigBed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF608PTB 977604 ENCODE Processing Pipeline 1177d4f7dd47bd69e051b031feb6647d https://www.encodeproject.org/files/ENCFF824PPC/@@download/ENCFF824PPC.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF842GNU bed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF175WRM, ENCFF184XIW, ENCFF442YRI, ENCFF610APA 509640 ENCODE Processing Pipeline 1273b8fa445501502c39a73fc956c76a https://www.encodeproject.org/files/ENCFF842GNU/@@download/ENCFF842GNU.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF305LPO bigWig signal p-value ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF610APA 519270455 ENCODE Processing Pipeline 498a096fb5bd32700c4e30b2095ec3aa https://www.encodeproject.org/files/ENCFF305LPO/@@download/ENCFF305LPO.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF133MLW bigWig signal p-value ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF442YRI 512566647 ENCODE Processing Pipeline a9b5fcaf7ac0585e61908cf1432b2ab8 https://www.encodeproject.org/files/ENCFF133MLW/@@download/ENCFF133MLW.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF718ZMB bigWig signal p-value ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF175WRM, ENCFF184XIW, ENCFF442YRI, ENCFF610APA 734164049 ENCODE Processing Pipeline 76ec9760c5510f20092af9bec00ca038 https://www.encodeproject.org/files/ENCFF718ZMB/@@download/ENCFF718ZMB.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF030RJP bigWig fold change over control ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF175WRM, ENCFF184XIW, ENCFF610APA 610116834 ENCODE Processing Pipeline eedfa470f2a9da265e4414d1bce521e6 https://www.encodeproject.org/files/ENCFF030RJP/@@download/ENCFF030RJP.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF405UMC bigWig fold change over control ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF175WRM, ENCFF184XIW, ENCFF442YRI 565604156 ENCODE Processing Pipeline 7102599636992205a4e061ea0a6b37e5 https://www.encodeproject.org/files/ENCFF405UMC/@@download/ENCFF405UMC.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF356RMM bigWig fold change over control ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF175WRM, ENCFF184XIW, ENCFF442YRI, ENCFF610APA 882406232 ENCODE Processing Pipeline 852999215746a62dc3b4b4351eb3fe7e https://www.encodeproject.org/files/ENCFF356RMM/@@download/ENCFF356RMM.bigWig mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF773MNA bed narrowPeak replicated peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF407SEX, ENCFF608PTB, ENCFF842GNU 86861 ENCODE Processing Pipeline 94fda7bcb7e906255f6f76dc752a3813 https://www.encodeproject.org/files/ENCFF773MNA/@@download/ENCFF773MNA.bed.gz mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF621PBI bigBed narrowPeak replicated peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF773MNA 285642 ENCODE Processing Pipeline 84fe9ce3627f85c90b9ad4641dd2fff8 https://www.encodeproject.org/files/ENCFF621PBI/@@download/ENCFF621PBI.bigBed mm10-minimal archived low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF767WKB fastq reads ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 3 50 single-ended 25419514 Bing Ren, UCSD 7806594a83698cbef4fa872ba87f4343 SRA:SRR3652237 https://www.encodeproject.org/files/ENCFF767WKB/@@download/ENCFF767WKB.fastq.gz Illumina HiSeq 4000 /files/ENCFF002ARA/ released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF143CEV bam unfiltered alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSN, ENCFF002DSO, ENCFF018NEO 2188898313 ENCODE Processing Pipeline 852c3d55a7b2e0bdde320815454a2f23 https://www.encodeproject.org/files/ENCFF143CEV/@@download/ENCFF143CEV.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF300ORM bam unfiltered alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSP, ENCFF002DSV, ENCFF018NEO, ENCFF767WKB 2081766139 ENCODE Processing Pipeline 990793273f4e02553c5705a8eedcb7b4 https://www.encodeproject.org/files/ENCFF300ORM/@@download/ENCFF300ORM.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF965HDQ bam alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSN, ENCFF002DSO, ENCFF018NEO 1065548978 ENCODE Processing Pipeline d020d60100f6d5bb0196dddc1212871e https://www.encodeproject.org/files/ENCFF965HDQ/@@download/ENCFF965HDQ.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF748IRD bam alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSP, ENCFF002DSV, ENCFF018NEO, ENCFF767WKB 961775121 ENCODE Processing Pipeline 4eade879b3249ef069e1c2a769715f97 https://www.encodeproject.org/files/ENCFF748IRD/@@download/ENCFF748IRD.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF695ZTI bed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF965HDQ 203921 ENCODE Processing Pipeline 12be5ecfc7434fb4c93705985b762a2d https://www.encodeproject.org/files/ENCFF695ZTI/@@download/ENCFF695ZTI.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF346ZDR bed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF748IRD 356585 ENCODE Processing Pipeline a3da413eba215228840dca8ea64235b6 https://www.encodeproject.org/files/ENCFF346ZDR/@@download/ENCFF346ZDR.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF546PDG bed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF748IRD, ENCFF965HDQ 350550 ENCODE Processing Pipeline bde2a1e1bb7715e81f1f4f8fe5fae965 https://www.encodeproject.org/files/ENCFF546PDG/@@download/ENCFF546PDG.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF152UTZ bigBed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF695ZTI 397450 ENCODE Processing Pipeline 84d40e41fa6150069da7b87aac202c52 https://www.encodeproject.org/files/ENCFF152UTZ/@@download/ENCFF152UTZ.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF646REW bigBed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF346ZDR 774167 ENCODE Processing Pipeline 741462c428fd0417d8df8fb3c89b2b0b https://www.encodeproject.org/files/ENCFF646REW/@@download/ENCFF646REW.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF809HET bigBed narrowPeak peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF546PDG 741424 ENCODE Processing Pipeline 51e3732d926f6de75c16eadd1818a360 https://www.encodeproject.org/files/ENCFF809HET/@@download/ENCFF809HET.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF593WNE bigWig signal p-value ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF965HDQ 553548729 ENCODE Processing Pipeline 2a97d34dff9195de520627643cab3b8e https://www.encodeproject.org/files/ENCFF593WNE/@@download/ENCFF593WNE.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF221UKP bigWig signal p-value ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF748IRD 551440529 ENCODE Processing Pipeline 036b45cb2ec11697a1c23f62ac35fb53 https://www.encodeproject.org/files/ENCFF221UKP/@@download/ENCFF221UKP.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF010BLJ bigWig signal p-value ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF748IRD, ENCFF965HDQ 839126714 ENCODE Processing Pipeline 6834b50548284c06b5d70ed39f0b9322 https://www.encodeproject.org/files/ENCFF010BLJ/@@download/ENCFF010BLJ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF664YAD bigWig fold change over control ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 ENCFF190RFD, ENCFF523XKB, ENCFF965HDQ 596794278 ENCODE Processing Pipeline 7a9548e7f41bd96006f4ae2ad7058768 https://www.encodeproject.org/files/ENCFF664YAD/@@download/ENCFF664YAD.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF660FZJ bigWig fold change over control ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 ENCFF190RFD, ENCFF523XKB, ENCFF748IRD 553543371 ENCODE Processing Pipeline eea902abc4fa7636dde24046bf92419f https://www.encodeproject.org/files/ENCFF660FZJ/@@download/ENCFF660FZJ.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF517QXW bigWig fold change over control ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF190RFD, ENCFF523XKB, ENCFF748IRD, ENCFF965HDQ 901328538 ENCODE Processing Pipeline 5840d1743ff8c0702f53c2f9fae9fb7b https://www.encodeproject.org/files/ENCFF517QXW/@@download/ENCFF517QXW.bigWig mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF881PQB bed narrowPeak replicated peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF346ZDR, ENCFF546PDG, ENCFF695ZTI 69857 ENCODE Processing Pipeline 37e4a148301241e97f0745ef69d29a07 https://www.encodeproject.org/files/ENCFF881PQB/@@download/ENCFF881PQB.bed.gz mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF536IRW bigBed narrowPeak replicated peaks ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1, 2 ENCFF881PQB 247484 ENCODE Processing Pipeline 69782038efe446d2a57e33cff852ac06 https://www.encodeproject.org/files/ENCFF536IRW/@@download/ENCFF536IRW.bigBed mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF002ETS fastq reads ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1406161893 Bing Ren, UCSD 8982e4a424ce585bc1640b1d0c21f81b SRA:SRR3653366 https://www.encodeproject.org/files/ENCFF002ETS/@@download/ENCFF002ETS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BYA/ released low read length insufficient read depth, control insufficient read depth ENCFF002ETT fastq reads ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1581009928 Bing Ren, UCSD 7cdfdc5ba0f21cd1fff8dee01e3de61f SRA:SRR3653365 https://www.encodeproject.org/files/ENCFF002ETT/@@download/ENCFF002ETT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXY/ released low read length insufficient read depth, control insufficient read depth ENCFF391GPF bam alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETT, ENCFF806TVZ 1142922362 ENCODE Processing Pipeline 355a64dd967862dc1173d05407a100f6 https://www.encodeproject.org/files/ENCFF391GPF/@@download/ENCFF391GPF.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF127YNO bam alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETS, ENCFF806TVZ 1024951445 ENCODE Processing Pipeline f5736ca229519e1652cd62c34216eb58 https://www.encodeproject.org/files/ENCFF127YNO/@@download/ENCFF127YNO.bam mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF670YMO bed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF127YNO 2696023 ENCODE Processing Pipeline 2558e9a805a28b5f512fee2ea2ee9b66 https://www.encodeproject.org/files/ENCFF670YMO/@@download/ENCFF670YMO.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF509SOC bed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF127YNO, ENCFF391GPF 2126329 ENCODE Processing Pipeline ca799c47fed05f98af133e806e829dec https://www.encodeproject.org/files/ENCFF509SOC/@@download/ENCFF509SOC.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF007XPO bed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF391GPF 2339592 ENCODE Processing Pipeline cb8d84178edefe591515b9c0642b75b6 https://www.encodeproject.org/files/ENCFF007XPO/@@download/ENCFF007XPO.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF782PXV bigBed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF670YMO 6345215 ENCODE Processing Pipeline 455fa4dd9f693a57324fe98938bb155c https://www.encodeproject.org/files/ENCFF782PXV/@@download/ENCFF782PXV.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF164MGR bigWig signal p-value ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF391GPF 524786428 ENCODE Processing Pipeline 4527bf1343a8162e376e16fd9476f07a https://www.encodeproject.org/files/ENCFF164MGR/@@download/ENCFF164MGR.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF180OGY bigBed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF007XPO 5810289 ENCODE Processing Pipeline de73f7277b79213bccfb27396d4fa7ef https://www.encodeproject.org/files/ENCFF180OGY/@@download/ENCFF180OGY.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF042VEO bigWig signal p-value ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF127YNO 399515962 ENCODE Processing Pipeline fc9e76c7b80d66f1bca11d74e3b682e1 https://www.encodeproject.org/files/ENCFF042VEO/@@download/ENCFF042VEO.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF068OZO bigBed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF509SOC 5040458 ENCODE Processing Pipeline e116bf81cd2c21597d53ec49083f0437 https://www.encodeproject.org/files/ENCFF068OZO/@@download/ENCFF068OZO.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF099YDC bigWig signal p-value ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF127YNO, ENCFF391GPF 543888697 ENCODE Processing Pipeline fcedf5205eb8f08d180f134331a1d739 https://www.encodeproject.org/files/ENCFF099YDC/@@download/ENCFF099YDC.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF559HYB bigWig fold change over control ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF098KIR, ENCFF127YNO 442784575 ENCODE Processing Pipeline dd15e47476480447cd41d36b9f34aea8 https://www.encodeproject.org/files/ENCFF559HYB/@@download/ENCFF559HYB.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF239NDJ bigWig fold change over control ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF391GPF 476231098 ENCODE Processing Pipeline ed20706474607d2f97f4db0642016faf https://www.encodeproject.org/files/ENCFF239NDJ/@@download/ENCFF239NDJ.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF484UAA bigWig fold change over control ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF098KIR, ENCFF127YNO, ENCFF391GPF 744818699 ENCODE Processing Pipeline d521c08c36d92f01b2d1321eebe37743 https://www.encodeproject.org/files/ENCFF484UAA/@@download/ENCFF484UAA.bigWig mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF388BQL bigBed narrowPeak replicated peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF690JGN 4196424 ENCODE Processing Pipeline 8cc8ab42f4ab761b77fface7d5e7e6aa https://www.encodeproject.org/files/ENCFF388BQL/@@download/ENCFF388BQL.bigBed mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF690JGN bed narrowPeak replicated peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF007XPO, ENCFF509SOC, ENCFF670YMO 2165694 ENCODE Processing Pipeline 218f1f090487797ebd86b60f6495a1d6 https://www.encodeproject.org/files/ENCFF690JGN/@@download/ENCFF690JGN.bed.gz mm10-minimal archived low read length insufficient read depth, control insufficient read depth ENCFF309KXO bam alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETT, ENCFF018NEO 1142624356 ENCODE Processing Pipeline e39bf321fb3cf394ca664f539f7ec7b9 https://www.encodeproject.org/files/ENCFF309KXO/@@download/ENCFF309KXO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF737UOC bam unfiltered alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETS, ENCFF018NEO 1784188482 ENCODE Processing Pipeline 44e61d34464ce21c8bf72bb46862a518 https://www.encodeproject.org/files/ENCFF737UOC/@@download/ENCFF737UOC.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF438OQR bam unfiltered alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETT, ENCFF018NEO 2004840522 ENCODE Processing Pipeline 58acb14492e918f56cc8396c85442cb4 https://www.encodeproject.org/files/ENCFF438OQR/@@download/ENCFF438OQR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF637WOG bam alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETS, ENCFF018NEO 1024694702 ENCODE Processing Pipeline 867eebb48397ff5c5239c389cace0fa8 https://www.encodeproject.org/files/ENCFF637WOG/@@download/ENCFF637WOG.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF712OQQ bed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF309KXO, ENCFF855ISH 1171552 ENCODE Processing Pipeline 4a8b738dcc55a7e611a4340b25f96bad https://www.encodeproject.org/files/ENCFF712OQQ/@@download/ENCFF712OQQ.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF694AUL bed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF637WOG, ENCFF855ISH 2697473 ENCODE Processing Pipeline 765db531ae188574c2220afa19a99c8c https://www.encodeproject.org/files/ENCFF694AUL/@@download/ENCFF694AUL.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF654QAN bed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF309KXO, ENCFF637WOG, ENCFF855ISH 2125437 ENCODE Processing Pipeline 301a567426f5f8fb762b6b84ba314e42 https://www.encodeproject.org/files/ENCFF654QAN/@@download/ENCFF654QAN.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF178MFN bigBed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF654QAN 5039117 ENCODE Processing Pipeline 14ec0fbab629e1a1b97ebaecf48745e6 https://www.encodeproject.org/files/ENCFF178MFN/@@download/ENCFF178MFN.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF427LWJ bigBed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF694AUL 6352213 ENCODE Processing Pipeline e4bd85db5a4a7dc43cd2f6f2d05f82f5 https://www.encodeproject.org/files/ENCFF427LWJ/@@download/ENCFF427LWJ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF212NXN bigBed narrowPeak peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF712OQQ 2393325 ENCODE Processing Pipeline e48f4f03ad158b173fcc9e15542cca27 https://www.encodeproject.org/files/ENCFF212NXN/@@download/ENCFF212NXN.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF963ZOL bigWig signal p-value ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF637WOG, ENCFF855ISH 503024118 ENCODE Processing Pipeline fe95208eead3bc098c91450e0853f85a https://www.encodeproject.org/files/ENCFF963ZOL/@@download/ENCFF963ZOL.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF978IAR bigWig signal p-value ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF309KXO, ENCFF855ISH 281049016 ENCODE Processing Pipeline 4912af62de220670fc1fe3fde5a03119 https://www.encodeproject.org/files/ENCFF978IAR/@@download/ENCFF978IAR.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF851QAE bigWig signal p-value ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF309KXO, ENCFF637WOG, ENCFF855ISH 543842196 ENCODE Processing Pipeline 8a98bfa5e8a44eab413d6c27ddb9154e https://www.encodeproject.org/files/ENCFF851QAE/@@download/ENCFF851QAE.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF042WHM bigWig fold change over control ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF637WOG, ENCFF855ISH 439659487 ENCODE Processing Pipeline 5b95bcc5534d01df1462f6651bd3226f https://www.encodeproject.org/files/ENCFF042WHM/@@download/ENCFF042WHM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF142JYF bigWig fold change over control ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF309KXO, ENCFF855ISH 379009123 ENCODE Processing Pipeline 515e3af2c1ba33c3c1282d0ab8a281cf https://www.encodeproject.org/files/ENCFF142JYF/@@download/ENCFF142JYF.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF703RAT bigWig fold change over control ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF309KXO, ENCFF637WOG, ENCFF855ISH 735541332 ENCODE Processing Pipeline 4aa71c1eb7eccd9b190e031df11f4ecd https://www.encodeproject.org/files/ENCFF703RAT/@@download/ENCFF703RAT.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF782HRY bed narrowPeak replicated peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF654QAN, ENCFF694AUL, ENCFF712OQQ 1965523 ENCODE Processing Pipeline 899fd39c7d68d3af416c7127b957cab4 https://www.encodeproject.org/files/ENCFF782HRY/@@download/ENCFF782HRY.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF886QEI bigBed narrowPeak replicated peaks ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF782HRY 3852449 ENCODE Processing Pipeline f2f8286e13ba18c263d0eaaa2cead31e https://www.encodeproject.org/files/ENCFF886QEI/@@download/ENCFF886QEI.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF002AFL fastq reads ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 772058215 Bing Ren, UCSD 97b23d9fb825adb6273ab3941a8f5682 SRA:SRR3652734 https://www.encodeproject.org/files/ENCFF002AFL/@@download/ENCFF002AFL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002ARJ/ released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF002AFS fastq reads ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1337677519 Bing Ren, UCSD 45dfbb75f873c69c83deb100a631ada7 SRA:SRR3652733 https://www.encodeproject.org/files/ENCFF002AFS/@@download/ENCFF002AFS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARK/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF334LFU bam alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AFL, ENCFF806TVZ 594694284 ENCODE Processing Pipeline c846c6e93f69b773e8159838d22aa6e1 https://www.encodeproject.org/files/ENCFF334LFU/@@download/ENCFF334LFU.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF221LTN bam alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AFS, ENCFF806TVZ 1010454084 ENCODE Processing Pipeline 99228b8bb038c1a88c1532fdbb9d6eff https://www.encodeproject.org/files/ENCFF221LTN/@@download/ENCFF221LTN.bam mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF913BIB bigBed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF482NAT 2564772 ENCODE Processing Pipeline cc1ac7670cc29b5a2b27f7651fd42188 https://www.encodeproject.org/files/ENCFF913BIB/@@download/ENCFF913BIB.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF328MHE bed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF221LTN, ENCFF444YOE, ENCFF934LFS 1392922 ENCODE Processing Pipeline ad8138c50aaa321523317b1b4a3d9f99 https://www.encodeproject.org/files/ENCFF328MHE/@@download/ENCFF328MHE.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF482NAT bed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF334LFU, ENCFF444YOE, ENCFF934LFS 1047120 ENCODE Processing Pipeline f36df24f4a7d203d2297d61b12ee46d9 https://www.encodeproject.org/files/ENCFF482NAT/@@download/ENCFF482NAT.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF349PCR bigBed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175VPZ 3087324 ENCODE Processing Pipeline 20a15e35dc858dda6f09d31840e6815c https://www.encodeproject.org/files/ENCFF349PCR/@@download/ENCFF349PCR.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF634EUW bigWig signal p-value ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF221LTN, ENCFF444YOE, ENCFF934LFS 383382494 ENCODE Processing Pipeline 73631035ce07c00624983b2672a711b4 https://www.encodeproject.org/files/ENCFF634EUW/@@download/ENCFF634EUW.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF175VPZ bed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF221LTN, ENCFF334LFU, ENCFF444YOE, ENCFF934LFS 1325294 ENCODE Processing Pipeline fe947ecea7bd0ed4bb85f79129e04d81 https://www.encodeproject.org/files/ENCFF175VPZ/@@download/ENCFF175VPZ.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF935ZBV bigBed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF328MHE 3251484 ENCODE Processing Pipeline ad54621be6f0852cfd20b82d77be5e3b https://www.encodeproject.org/files/ENCFF935ZBV/@@download/ENCFF935ZBV.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF471HDM bigWig signal p-value ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF334LFU, ENCFF444YOE, ENCFF934LFS 412164468 ENCODE Processing Pipeline f5e063223c62628173df67948511d7f7 https://www.encodeproject.org/files/ENCFF471HDM/@@download/ENCFF471HDM.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF674JWY bigWig signal p-value ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF221LTN, ENCFF334LFU, ENCFF444YOE, ENCFF934LFS 512049412 ENCODE Processing Pipeline 3931124db06eeda7aa8f25592035712d https://www.encodeproject.org/files/ENCFF674JWY/@@download/ENCFF674JWY.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF823JBL bigWig fold change over control ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF221LTN, ENCFF444YOE, ENCFF934LFS 376340940 ENCODE Processing Pipeline b3fb63c369753e7dce8c815cffe9ea26 https://www.encodeproject.org/files/ENCFF823JBL/@@download/ENCFF823JBL.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF927MZJ bigWig fold change over control ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF334LFU, ENCFF444YOE, ENCFF934LFS 351168630 ENCODE Processing Pipeline f2cee2044f651afc50e85bda33e166ec https://www.encodeproject.org/files/ENCFF927MZJ/@@download/ENCFF927MZJ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF248MSQ bigWig fold change over control ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF221LTN, ENCFF334LFU, ENCFF444YOE, ENCFF934LFS 567301791 ENCODE Processing Pipeline 6204917f64f032aec764ad30c8b084d7 https://www.encodeproject.org/files/ENCFF248MSQ/@@download/ENCFF248MSQ.bigWig mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF687QHV bed narrowPeak replicated peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF175VPZ, ENCFF328MHE, ENCFF482NAT 838579 ENCODE Processing Pipeline cdcabdb00e7b391bb96ea4a0d80b7efc https://www.encodeproject.org/files/ENCFF687QHV/@@download/ENCFF687QHV.bed.gz mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF554GAP bigBed narrowPeak replicated peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF687QHV 1754875 ENCODE Processing Pipeline 87452a7ac84f7508c6a4061eb8cacc76 https://www.encodeproject.org/files/ENCFF554GAP/@@download/ENCFF554GAP.bigBed mm10-minimal archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF677CKJ bam unfiltered alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFS, ENCFF018NEO 1197925895 ENCODE Processing Pipeline c48dd21b07d0572f086cc9cdea18b30b https://www.encodeproject.org/files/ENCFF677CKJ/@@download/ENCFF677CKJ.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF743PJV bam unfiltered alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFL, ENCFF018NEO 921944363 ENCODE Processing Pipeline 19bcbd59abbdc65edf0263e28fd8e7fe https://www.encodeproject.org/files/ENCFF743PJV/@@download/ENCFF743PJV.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF364OBA bam alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFL, ENCFF018NEO 594546813 ENCODE Processing Pipeline 9c8d255092c1e11301a9a2907deb7b04 https://www.encodeproject.org/files/ENCFF364OBA/@@download/ENCFF364OBA.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF488YJW bam alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFS, ENCFF018NEO 781651632 ENCODE Processing Pipeline 58a9b32b2ba0699867e2e4f8caa6d44f https://www.encodeproject.org/files/ENCFF488YJW/@@download/ENCFF488YJW.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF620EEO bed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF488YJW, ENCFF681SBF 1367907 ENCODE Processing Pipeline 3ae971d2231e775104087281348a8f1a https://www.encodeproject.org/files/ENCFF620EEO/@@download/ENCFF620EEO.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF645CIC bed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF364OBA, ENCFF681SBF 1041143 ENCODE Processing Pipeline c5eb46d0bb38c14b6201c8440c790475 https://www.encodeproject.org/files/ENCFF645CIC/@@download/ENCFF645CIC.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF991JUZ bed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF319PHE, ENCFF364OBA, ENCFF488YJW, ENCFF681SBF 1318330 ENCODE Processing Pipeline 69cd1d967ea6efdf145f0e02e2cceb6e https://www.encodeproject.org/files/ENCFF991JUZ/@@download/ENCFF991JUZ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF145NRZ bigBed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF620EEO 3217328 ENCODE Processing Pipeline 2df6245dd43fbb1a6c543b740ad205b6 https://www.encodeproject.org/files/ENCFF145NRZ/@@download/ENCFF145NRZ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF980LFQ bigBed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF645CIC 2563446 ENCODE Processing Pipeline 9c6006e900afe52e828c31e5dd7aa5b1 https://www.encodeproject.org/files/ENCFF980LFQ/@@download/ENCFF980LFQ.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF324XKN bigBed narrowPeak peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF991JUZ 3118022 ENCODE Processing Pipeline bc62cc1580bb0dad062d1a31f4dffd60 https://www.encodeproject.org/files/ENCFF324XKN/@@download/ENCFF324XKN.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF842LTS bigWig signal p-value ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF488YJW, ENCFF681SBF 406897236 ENCODE Processing Pipeline e1d5497d9409eadb8559499fc4ee5074 https://www.encodeproject.org/files/ENCFF842LTS/@@download/ENCFF842LTS.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF236MDH bigWig signal p-value ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF364OBA, ENCFF681SBF 383791203 ENCODE Processing Pipeline ae4125dd9d1b919ef8ed12f7893eecdb https://www.encodeproject.org/files/ENCFF236MDH/@@download/ENCFF236MDH.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF809WFE bigWig signal p-value ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF319PHE, ENCFF364OBA, ENCFF488YJW, ENCFF681SBF 622780662 ENCODE Processing Pipeline 5a0dee311b2896d757228323c2fa6b4e https://www.encodeproject.org/files/ENCFF809WFE/@@download/ENCFF809WFE.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF869UQC bigWig fold change over control ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF319PHE, ENCFF488YJW, ENCFF681SBF 381223281 ENCODE Processing Pipeline 31c4bd3a56fdb017f6bada695c9b6cc0 https://www.encodeproject.org/files/ENCFF869UQC/@@download/ENCFF869UQC.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF057UIH bigWig fold change over control ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319PHE, ENCFF364OBA, ENCFF681SBF 351197078 ENCODE Processing Pipeline f6848e9080c57017ab8da10fa5bb7538 https://www.encodeproject.org/files/ENCFF057UIH/@@download/ENCFF057UIH.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF961KLD bigWig fold change over control ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF319PHE, ENCFF364OBA, ENCFF488YJW, ENCFF681SBF 616184858 ENCODE Processing Pipeline 50275e10255df82d778bfddfa28a1b8c https://www.encodeproject.org/files/ENCFF961KLD/@@download/ENCFF961KLD.bigWig mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF565NSZ bed narrowPeak replicated peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF620EEO, ENCFF645CIC, ENCFF991JUZ 858359 ENCODE Processing Pipeline ea15efebd29d735db481702d1c4c000e https://www.encodeproject.org/files/ENCFF565NSZ/@@download/ENCFF565NSZ.bed.gz mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF364PCN bigBed narrowPeak replicated peaks ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF565NSZ 1773165 ENCODE Processing Pipeline b26da98c71b7a94b474e0cb4917d2638 https://www.encodeproject.org/files/ENCFF364PCN/@@download/ENCFF364PCN.bigBed mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF381HVY fastq reads ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 792491525 Michael Snyder, Stanford 531595711b5ba4b28bbabcadff505430 https://www.encodeproject.org/files/ENCFF381HVY/@@download/ENCFF381HVY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF889MSI bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF381HVY 685453338 Michael Snyder, Stanford 73ab4a485d3098ede07fb8716cf0136b https://www.encodeproject.org/files/ENCFF889MSI/@@download/ENCFF889MSI.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF986XRF fastq reads ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 861478492 Michael Snyder, Stanford 4bceb508e3ba4375c50b99937d4f3c04 https://www.encodeproject.org/files/ENCFF986XRF/@@download/ENCFF986XRF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF570ABH bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF986XRF 707259040 Michael Snyder, Stanford 2823b1a8daef38fa80d8359bbadb10a3 https://www.encodeproject.org/files/ENCFF570ABH/@@download/ENCFF570ABH.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF439VGN bed narrowPeak peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF570ABH, ENCFF889MSI 278145 Michael Snyder, Stanford 33dcf7a9e37f913b47364966c809e803 https://www.encodeproject.org/files/ENCFF439VGN/@@download/ENCFF439VGN.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF752TEK bigBed narrowPeak peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF439VGN 615167 ENCODE Consortium b249e1fbc39aad963571c916e687896a https://www.encodeproject.org/files/ENCFF752TEK/@@download/ENCFF752TEK.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF792QEZ bam unfiltered alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF986XRF 1044578393 ENCODE Processing Pipeline 79d3d5fb95a763a5384978216935feb1 https://www.encodeproject.org/files/ENCFF792QEZ/@@download/ENCFF792QEZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF339TEB bam unfiltered alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF381HVY 932152346 ENCODE Processing Pipeline 8aceb195733a30b5e7febaabe8485c4b https://www.encodeproject.org/files/ENCFF339TEB/@@download/ENCFF339TEB.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF309VFP bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF986XRF 507930741 ENCODE Processing Pipeline 27492d8ee0420582f68d5cbe940908df https://www.encodeproject.org/files/ENCFF309VFP/@@download/ENCFF309VFP.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF990KEU bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF381HVY 420242107 ENCODE Processing Pipeline e4db407620e24fe385b8c3252a6a945a https://www.encodeproject.org/files/ENCFF990KEU/@@download/ENCFF990KEU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF600MFY bigWig signal p-value ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF990KEU 225828167 ENCODE Processing Pipeline 546cccd1b2730bc3f7d3a8e46d79c74f https://www.encodeproject.org/files/ENCFF600MFY/@@download/ENCFF600MFY.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF968AFM bigWig signal p-value ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF309VFP, ENCFF339ZWC 233988658 ENCODE Processing Pipeline ce94253231e355f665123a972a01acda https://www.encodeproject.org/files/ENCFF968AFM/@@download/ENCFF968AFM.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF468UTU bigWig fold change over control ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF990KEU 188480147 ENCODE Processing Pipeline da5cbd1b6f4eec183a7365ee7082c031 https://www.encodeproject.org/files/ENCFF468UTU/@@download/ENCFF468UTU.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF099IDG bigWig signal p-value ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF309VFP, ENCFF339ZWC, ENCFF990KEU 231282520 ENCODE Processing Pipeline 3576ebf143c77146bab0e8af3aea56cf https://www.encodeproject.org/files/ENCFF099IDG/@@download/ENCFF099IDG.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF680HBR bigWig fold change over control ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF309VFP, ENCFF339ZWC 217845382 ENCODE Processing Pipeline 9858823e5cfc36a55c1caeec62288eca https://www.encodeproject.org/files/ENCFF680HBR/@@download/ENCFF680HBR.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF421UII bigBed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF482CYN 9973882 ENCODE Processing Pipeline 826393725dd538ad0c28d841a45f0a9c https://www.encodeproject.org/files/ENCFF421UII/@@download/ENCFF421UII.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF018QPL bed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF309VFP, ENCFF339ZWC, ENCFF990KEU 5038787 ENCODE Processing Pipeline 611e472f4683da2a3a0696c98df686ed https://www.encodeproject.org/files/ENCFF018QPL/@@download/ENCFF018QPL.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF292QHD bigBed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF434PTP 10013754 ENCODE Processing Pipeline eeaf014f16cda95d085cbddebe34f91b https://www.encodeproject.org/files/ENCFF292QHD/@@download/ENCFF292QHD.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF434PTP bed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF309VFP, ENCFF339ZWC 4414541 ENCODE Processing Pipeline 932cb57fc3684a1731e4c88e89da037c https://www.encodeproject.org/files/ENCFF434PTP/@@download/ENCFF434PTP.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF650BRL bigWig fold change over control ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF309VFP, ENCFF339ZWC, ENCFF990KEU 351541424 ENCODE Processing Pipeline 5f5d8ad3a65a778a2c6257746cf577ad https://www.encodeproject.org/files/ENCFF650BRL/@@download/ENCFF650BRL.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF344XYL bigBed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF018QPL 12769801 ENCODE Processing Pipeline 4aa851edefc517070ce44edf383364fa https://www.encodeproject.org/files/ENCFF344XYL/@@download/ENCFF344XYL.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF323UTM bed narrowPeak conservative idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF018QPL, ENCFF434PTP, ENCFF482CYN, ENCFF547MET 288196 ENCODE Processing Pipeline 733a070a88a1779e2c71e0fc0fb7b3a7 https://www.encodeproject.org/files/ENCFF323UTM/@@download/ENCFF323UTM.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF482CYN bed narrowPeak peaks and background as input for IDR ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF990KEU 4452706 ENCODE Processing Pipeline c23647d97c494641c6515381e3069f04 https://www.encodeproject.org/files/ENCFF482CYN/@@download/ENCFF482CYN.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF613TDJ bed narrowPeak optimal idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF018QPL, ENCFF434PTP, ENCFF482CYN, ENCFF547MET 316860 ENCODE Processing Pipeline 8c33551da2197b0e4c668864addca82b https://www.encodeproject.org/files/ENCFF613TDJ/@@download/ENCFF613TDJ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF454GOV bigBed narrowPeak conservative idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF323UTM 541880 ENCODE Processing Pipeline f3e402cfd3fe2340f3816c63d1824cf1 https://www.encodeproject.org/files/ENCFF454GOV/@@download/ENCFF454GOV.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF682JMK bigBed narrowPeak optimal idr thresholded peaks ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF613TDJ 717116 ENCODE Processing Pipeline 083a2f2108b4d81c7552a8320e190d73 https://www.encodeproject.org/files/ENCFF682JMK/@@download/ENCFF682JMK.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF002EUN fastq reads ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1203787087 Bing Ren, UCSD 247902fd896ad68c1fbb8d055a661d68 SRA:SRR3653040 https://www.encodeproject.org/files/ENCFF002EUN/@@download/ENCFF002EUN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYC/ released low read length ENCFF002EUO fastq reads ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1679490687 Bing Ren, UCSD c0e65e721eb82354af98d1bd36660827 SRA:SRR3653041 https://www.encodeproject.org/files/ENCFF002EUO/@@download/ENCFF002EUO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYB/ released low read length ENCFF496ILD bam alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002EUO, ENCFF806TVZ 1283636098 ENCODE Processing Pipeline 1a87e378b219f25ddc746e7b9b6dcc23 https://www.encodeproject.org/files/ENCFF496ILD/@@download/ENCFF496ILD.bam mm10-minimal archived low read length ENCFF046IHT bam alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002EUN, ENCFF806TVZ 1094860120 ENCODE Processing Pipeline dd2b6a53d8d0c6efd2aebaf2c80712c2 https://www.encodeproject.org/files/ENCFF046IHT/@@download/ENCFF046IHT.bam mm10-minimal archived low read length ENCFF336ZLZ bed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF496ILD, ENCFF783YRC 1230810 ENCODE Processing Pipeline ec7de306226842c878509db27cc10c03 https://www.encodeproject.org/files/ENCFF336ZLZ/@@download/ENCFF336ZLZ.bed.gz mm10-minimal archived low read length ENCFF251MOQ bigBed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF336ZLZ 3702222 ENCODE Processing Pipeline 66ad7a58ffcac384a25ceb048c44211c https://www.encodeproject.org/files/ENCFF251MOQ/@@download/ENCFF251MOQ.bigBed mm10-minimal archived low read length ENCFF239REW bigBed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF752IDB 4089325 ENCODE Processing Pipeline e22b1c2eee8f91847798215a824047d7 https://www.encodeproject.org/files/ENCFF239REW/@@download/ENCFF239REW.bigBed mm10-minimal archived low read length ENCFF616URJ bed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF046IHT, ENCFF141POR, ENCFF783YRC 1615062 ENCODE Processing Pipeline 0673d0fdb395179ad06f8bc4dbb3f60a https://www.encodeproject.org/files/ENCFF616URJ/@@download/ENCFF616URJ.bed.gz mm10-minimal archived low read length ENCFF752IDB bed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF046IHT, ENCFF141POR, ENCFF496ILD, ENCFF783YRC 1421183 ENCODE Processing Pipeline 6145582af54a4d74c71caa4781c2332c https://www.encodeproject.org/files/ENCFF752IDB/@@download/ENCFF752IDB.bed.gz mm10-minimal archived low read length ENCFF899TUO bigBed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF616URJ 4686517 ENCODE Processing Pipeline bf53384c13ce104e6c9ba13ca54bad81 https://www.encodeproject.org/files/ENCFF899TUO/@@download/ENCFF899TUO.bigBed mm10-minimal archived low read length ENCFF349RSH bigWig signal p-value ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF496ILD, ENCFF783YRC 627664358 ENCODE Processing Pipeline 7bdb42e09a965aeba5cd19f928a98aa8 https://www.encodeproject.org/files/ENCFF349RSH/@@download/ENCFF349RSH.bigWig mm10-minimal archived low read length ENCFF409VKQ bigWig signal p-value ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF046IHT, ENCFF141POR, ENCFF783YRC 558519363 ENCODE Processing Pipeline 5d7e89f43ce9642f292dc3d1e119017f https://www.encodeproject.org/files/ENCFF409VKQ/@@download/ENCFF409VKQ.bigWig mm10-minimal archived low read length ENCFF716ROF bigWig signal p-value ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF046IHT, ENCFF141POR, ENCFF496ILD, ENCFF783YRC 913604262 ENCODE Processing Pipeline 042dc00ad59925e0169a600d2c688ded https://www.encodeproject.org/files/ENCFF716ROF/@@download/ENCFF716ROF.bigWig mm10-minimal archived low read length ENCFF030QDQ bigWig fold change over control ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF141POR, ENCFF496ILD, ENCFF783YRC 647605062 ENCODE Processing Pipeline e31b361b95e3ded7cfcdc41b58a13159 https://www.encodeproject.org/files/ENCFF030QDQ/@@download/ENCFF030QDQ.bigWig mm10-minimal archived low read length ENCFF788ZAL bigWig fold change over control ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF046IHT, ENCFF141POR, ENCFF783YRC 615104705 ENCODE Processing Pipeline 17d4b7089e2f294f9f4c51858a28a298 https://www.encodeproject.org/files/ENCFF788ZAL/@@download/ENCFF788ZAL.bigWig mm10-minimal archived low read length ENCFF384AGQ bigWig fold change over control ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF046IHT, ENCFF141POR, ENCFF496ILD, ENCFF783YRC 947409754 ENCODE Processing Pipeline be3439c608af5ddf47d80e5b80e9f2aa https://www.encodeproject.org/files/ENCFF384AGQ/@@download/ENCFF384AGQ.bigWig mm10-minimal archived low read length ENCFF795BGT bigBed narrowPeak replicated peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF648VGX 2694179 ENCODE Processing Pipeline c6884b0f62e8a6a317017bce16989c75 https://www.encodeproject.org/files/ENCFF795BGT/@@download/ENCFF795BGT.bigBed mm10-minimal archived low read length ENCFF648VGX bed narrowPeak replicated peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF336ZLZ, ENCFF616URJ, ENCFF752IDB 1243563 ENCODE Processing Pipeline c60a3474ac3b0c00a1f34519b40457cd https://www.encodeproject.org/files/ENCFF648VGX/@@download/ENCFF648VGX.bed.gz mm10-minimal archived low read length ENCFF507BGM bam unfiltered alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUO, ENCFF018NEO 2075920824 ENCODE Processing Pipeline 2f1e1d03908bfb4d6163a723048758af https://www.encodeproject.org/files/ENCFF507BGM/@@download/ENCFF507BGM.bam mm10 released low read length ENCFF944VMR bam unfiltered alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUN, ENCFF018NEO 1521861965 ENCODE Processing Pipeline 516015d2a83f1cfaec0e153908fdb47c https://www.encodeproject.org/files/ENCFF944VMR/@@download/ENCFF944VMR.bam mm10 released low read length ENCFF129MPS bam alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUO, ENCFF018NEO 1283344121 ENCODE Processing Pipeline 184a10d46aacbf0e0ae0030e2b0cb1bd https://www.encodeproject.org/files/ENCFF129MPS/@@download/ENCFF129MPS.bam mm10 released low read length ENCFF157IWD bam alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUN, ENCFF018NEO 1094654064 ENCODE Processing Pipeline da3d0a1d487f2458aea4398895dc1200 https://www.encodeproject.org/files/ENCFF157IWD/@@download/ENCFF157IWD.bam mm10 released low read length ENCFF324YDY bed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF129MPS, ENCFF658UBJ 1227269 ENCODE Processing Pipeline 910d91e6212b39902f4352453d2ebc90 https://www.encodeproject.org/files/ENCFF324YDY/@@download/ENCFF324YDY.bed.gz mm10 released low read length ENCFF298XJF bed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF157IWD 1172497 ENCODE Processing Pipeline af385325b7242c5e953d0040b59cca2d https://www.encodeproject.org/files/ENCFF298XJF/@@download/ENCFF298XJF.bed.gz mm10 released low read length ENCFF631RHW bed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF129MPS, ENCFF157IWD, ENCFF658UBJ 1419689 ENCODE Processing Pipeline ebb89005587644aaa87d3af1bdec36c1 https://www.encodeproject.org/files/ENCFF631RHW/@@download/ENCFF631RHW.bed.gz mm10 released low read length ENCFF753YHM bigBed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF324YDY 3691230 ENCODE Processing Pipeline b6164883fb080c45a504b6fa0b8c58ff https://www.encodeproject.org/files/ENCFF753YHM/@@download/ENCFF753YHM.bigBed mm10 released low read length ENCFF111YXQ bigBed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF298XJF 3486258 ENCODE Processing Pipeline bfd167786357c90102a9957b26abaccb https://www.encodeproject.org/files/ENCFF111YXQ/@@download/ENCFF111YXQ.bigBed mm10 released low read length ENCFF078AWH bigBed narrowPeak peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF631RHW 4085785 ENCODE Processing Pipeline 4af08d9b9ba8ad4719c360558d96831d https://www.encodeproject.org/files/ENCFF078AWH/@@download/ENCFF078AWH.bigBed mm10 released low read length ENCFF659NEK bigWig signal p-value ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF129MPS, ENCFF658UBJ 637528800 ENCODE Processing Pipeline 66b0e1d383c7d11a1e7372f0ce921c40 https://www.encodeproject.org/files/ENCFF659NEK/@@download/ENCFF659NEK.bigWig mm10 released low read length ENCFF423XWO bigWig signal p-value ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF157IWD 473970788 ENCODE Processing Pipeline 7cc0e591c63e6201bf9306e2341ef85f https://www.encodeproject.org/files/ENCFF423XWO/@@download/ENCFF423XWO.bigWig mm10 released low read length ENCFF193IRN bigWig signal p-value ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF129MPS, ENCFF157IWD, ENCFF658UBJ 901388413 ENCODE Processing Pipeline bacb778b9e919e4727047d0cf78d19a6 https://www.encodeproject.org/files/ENCFF193IRN/@@download/ENCFF193IRN.bigWig mm10 released low read length ENCFF647GDT bigWig fold change over control ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF025IEP, ENCFF129MPS, ENCFF658UBJ 642467525 ENCODE Processing Pipeline 62e706935aaecc4f8dc280ec09d8a1e9 https://www.encodeproject.org/files/ENCFF647GDT/@@download/ENCFF647GDT.bigWig mm10 released low read length ENCFF018OZE bigWig fold change over control ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF025IEP, ENCFF157IWD 468218219 ENCODE Processing Pipeline a2557f6e965003befcd3e0072506e625 https://www.encodeproject.org/files/ENCFF018OZE/@@download/ENCFF018OZE.bigWig mm10 released low read length ENCFF094RXG bigWig fold change over control ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF025IEP, ENCFF129MPS, ENCFF157IWD, ENCFF658UBJ 952831632 ENCODE Processing Pipeline a842d0d703120eabaa56df2151ae07e3 https://www.encodeproject.org/files/ENCFF094RXG/@@download/ENCFF094RXG.bigWig mm10 released low read length ENCFF068FWP bed narrowPeak replicated peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF298XJF, ENCFF324YDY, ENCFF631RHW 1198934 ENCODE Processing Pipeline be8d18066de8eb069d98537362530346 https://www.encodeproject.org/files/ENCFF068FWP/@@download/ENCFF068FWP.bed.gz mm10 released low read length ENCFF448DDY bigBed narrowPeak replicated peaks ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF068FWP 2604151 ENCODE Processing Pipeline d6597bb4e61c98cd12f3309de472d982 https://www.encodeproject.org/files/ENCFF448DDY/@@download/ENCFF448DDY.bigBed mm10 released low read length ENCFF001NHO bigWig signal ENCSR000ERT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NHP 152419059 Michael Snyder, Stanford 54159563e818fdb878372a134531969c https://www.encodeproject.org/files/ENCFF001NHO/@@download/ENCFF001NHO.bigWig mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NHP bam alignments ENCSR000ERT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NIF 460102718 Michael Snyder, Stanford 16d1c780f3355705526f60b42b4d7bbe https://www.encodeproject.org/files/ENCFF001NHP/@@download/ENCFF001NHP.bam mm9 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NIF fastq reads ENCSR000ERT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1152419783 Michael Snyder, Stanford dd5e8c77bb19a7d565c858b559b22169 https://www.encodeproject.org/files/ENCFF001NIF/@@download/ENCFF001NIF.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking, low read depth ENCFF877TZV bam unfiltered alignments ENCSR000ERT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIF, ENCFF018NEO 1336907946 ENCODE Processing Pipeline b3c08280e20b829e624b7cbb108c6ea4 https://www.encodeproject.org/files/ENCFF877TZV/@@download/ENCFF877TZV.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF528WZN bam alignments ENCSR000ERT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIF, ENCFF018NEO 718699628 ENCODE Processing Pipeline 2e8a28e5078f4ab6373b2ac224e82972 https://www.encodeproject.org/files/ENCFF528WZN/@@download/ENCFF528WZN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF001NLQ bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NNM 433035378 Michael Snyder, Stanford 1500d12ebc543a1777f56a85af43441e https://www.encodeproject.org/files/ENCFF001NLQ/@@download/ENCFF001NLQ.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLR bigBed narrowPeak peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YIQ 700202 Michael Snyder, Stanford d0d9ca47d59311057a3f90d61c668795 https://www.encodeproject.org/files/ENCFF001NLR/@@download/ENCFF001NLR.bigBed mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLS bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NNF 446690961 Michael Snyder, Stanford 3b9e1e515ed39d4ccdc0739975b4d78c https://www.encodeproject.org/files/ENCFF001NLS/@@download/ENCFF001NLS.bam mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NLU bigWig signal ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLQ, ENCFF001NLS 337595108 Michael Snyder, Stanford 1009037f643c66e0af35f11be8b4225a https://www.encodeproject.org/files/ENCFF001NLU/@@download/ENCFF001NLU.bigWig mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF001NNF fastq reads ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 1106901097 Michael Snyder, Stanford 3edf8b246c97a17eb6cf2a9a13d36979 https://www.encodeproject.org/files/ENCFF001NNF/@@download/ENCFF001NNF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, inconsistent target of control experiment, low read depth ENCFF001NNM fastq reads ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1614085096 Michael Snyder, Stanford a62d9a6914579ee39df4aea426a2f3d7 https://www.encodeproject.org/files/ENCFF001NNM/@@download/ENCFF001NNM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIF/ released low read length, inconsistent target of control experiment, low read depth ENCFF001YIQ bed narrowPeak peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NLQ, ENCFF001NLS 274091 Michael Snyder, Stanford 177aa59b8f7360b0e08770bc727624ed https://www.encodeproject.org/files/ENCFF001YIQ/@@download/ENCFF001YIQ.bed.gz mm9 released low read length, inconsistent target of control experiment, low read depth ENCFF873FFG bam unfiltered alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NNM, ENCFF018NEO 1863164474 ENCODE Processing Pipeline e8bbb7c2ee711f4eb48272a98d91577c https://www.encodeproject.org/files/ENCFF873FFG/@@download/ENCFF873FFG.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF593GIY bam unfiltered alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NNF, ENCFF018NEO 1331261939 ENCODE Processing Pipeline 0bcee08ce0df0576ad69b02edd0d1804 https://www.encodeproject.org/files/ENCFF593GIY/@@download/ENCFF593GIY.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF904LJW bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NNM, ENCFF018NEO 1139177408 ENCODE Processing Pipeline bb74e966b181203375ab8372e4cc6305 https://www.encodeproject.org/files/ENCFF904LJW/@@download/ENCFF904LJW.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF500FVS bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NNF, ENCFF018NEO 834951614 ENCODE Processing Pipeline 3e7d0e4701dce1a1718d12421c288350 https://www.encodeproject.org/files/ENCFF500FVS/@@download/ENCFF500FVS.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF768CJH bigWig signal p-value ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF500FVS, ENCFF528WZN 323770455 ENCODE Processing Pipeline c13511e938f5c183ef81f9ab5a8c19de https://www.encodeproject.org/files/ENCFF768CJH/@@download/ENCFF768CJH.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF122ASV bigWig signal p-value ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF904LJW 372615826 ENCODE Processing Pipeline 1ee6a1912a506ffe0a23515aaa03ffa8 https://www.encodeproject.org/files/ENCFF122ASV/@@download/ENCFF122ASV.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF073TGE bigWig signal p-value ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500FVS, ENCFF528WZN, ENCFF904LJW 340012994 ENCODE Processing Pipeline 14d5ce4e82990ceb0215fd0244e5342f https://www.encodeproject.org/files/ENCFF073TGE/@@download/ENCFF073TGE.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF016SSW bigWig fold change over control ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF904LJW 439498536 ENCODE Processing Pipeline 60399e10e900a4fb31b78dae6b7468be https://www.encodeproject.org/files/ENCFF016SSW/@@download/ENCFF016SSW.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF236VEW bigWig fold change over control ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF500FVS, ENCFF528WZN 325056261 ENCODE Processing Pipeline 1ad6f295590f9894d8ba0a1c21f77096 https://www.encodeproject.org/files/ENCFF236VEW/@@download/ENCFF236VEW.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF495UJH bigWig fold change over control ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500FVS, ENCFF528WZN, ENCFF904LJW 647799767 ENCODE Processing Pipeline 1ca0e233cae295f24e4b770d4004039d https://www.encodeproject.org/files/ENCFF495UJH/@@download/ENCFF495UJH.bigWig mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF213QTT bed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF528WZN, ENCFF904LJW 894224 ENCODE Processing Pipeline cb5fd43b7d88823c74bba75dd4fc6f19 https://www.encodeproject.org/files/ENCFF213QTT/@@download/ENCFF213QTT.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF876DTD bed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF500FVS, ENCFF528WZN 4674211 ENCODE Processing Pipeline 0c66d1a3c66997d165cd790c126bd66e https://www.encodeproject.org/files/ENCFF876DTD/@@download/ENCFF876DTD.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF101GGW bed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF500FVS, ENCFF528WZN, ENCFF904LJW 5554617 ENCODE Processing Pipeline 78e62b251356b9777260b9c8dac9a8ab https://www.encodeproject.org/files/ENCFF101GGW/@@download/ENCFF101GGW.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF303MTG bigBed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF213QTT 1845497 ENCODE Processing Pipeline c30842ee75443793205f075a92296236 https://www.encodeproject.org/files/ENCFF303MTG/@@download/ENCFF303MTG.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF954CIN bigBed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF876DTD 10695014 ENCODE Processing Pipeline e9ad94571d288fac2410d288fa1781cb https://www.encodeproject.org/files/ENCFF954CIN/@@download/ENCFF954CIN.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF224XHF bigBed narrowPeak peaks and background as input for IDR ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF101GGW 10980066 ENCODE Processing Pipeline 5685fa72ceee195424e0ac00e71d6403 https://www.encodeproject.org/files/ENCFF224XHF/@@download/ENCFF224XHF.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF766ABJ bed narrowPeak optimal idr thresholded peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF101GGW, ENCFF213QTT, ENCFF547MET, ENCFF876DTD 103085 ENCODE Processing Pipeline e417de34d2464f750ce181ea0eaebf0e https://www.encodeproject.org/files/ENCFF766ABJ/@@download/ENCFF766ABJ.bed.gz mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF478JTX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF766ABJ 217212 ENCODE Processing Pipeline ca0e02cbc22002f93e57daf35b97d6a4 https://www.encodeproject.org/files/ENCFF478JTX/@@download/ENCFF478JTX.bigBed mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF001LXU bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LYL 5842478318 Ross Hardison, PennState 732ec752c636ddc2e7c788125af7ae4b https://www.encodeproject.org/files/ENCFF001LXU/@@download/ENCFF001LXU.bam mm9 archived inconsistent platforms control insufficient read depth ENCFF001LXV bigBed broadPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE ENCFF001YCI 1368347 Ross Hardison, PennState 7b5d70496a2bda477f8b5a3e9a6814db https://www.encodeproject.org/files/ENCFF001LXV/@@download/ENCFF001LXV.bigBed mm9 archived inconsistent platforms control insufficient read depth ENCFF001LXW bigBed broadPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 ENCFF001YCJ 1314686 Ross Hardison, PennState ce537d1c78f966d325ed1e740386d35c https://www.encodeproject.org/files/ENCFF001LXW/@@download/ENCFF001LXW.bigBed mm9 archived inconsistent platforms control insufficient read depth ENCFF001LXX bigBed broadPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 ENCFF001YCK 1209416 Ross Hardison, PennState 3880b2856059403bde4d47238e79944d https://www.encodeproject.org/files/ENCFF001LXX/@@download/ENCFF001LXX.bigBed mm9 archived inconsistent platforms control insufficient read depth ENCFF001LXY bigWig signal ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 5979269781 Ross Hardison, PennState 5400337407d9dfd59a25c0b096a649e2 https://www.encodeproject.org/files/ENCFF001LXY/@@download/ENCFF001LXY.bigWig mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001LXZ bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LYN 4845567726 Ross Hardison, PennState 06e785110509da287bd819629a11908f https://www.encodeproject.org/files/ENCFF001LXZ/@@download/ENCFF001LXZ.bam mm9 archived inconsistent platforms control insufficient read depth ENCFF001LYA bigWig signal ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 5718170412 Ross Hardison, PennState 6943be5291fa757a347253082f16045b https://www.encodeproject.org/files/ENCFF001LYA/@@download/ENCFF001LYA.bigWig mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001LYC bigWig signal ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 6421261256 Ross Hardison, PennState 813b3f7d29779c4a58931bbdd1c4e638 https://www.encodeproject.org/files/ENCFF001LYC/@@download/ENCFF001LYC.bigWig mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001LYL fastq reads ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 55 single-ended 5282693024 Ross Hardison, PennState d0d9e168b91be6de5cbd0dcdb350d8a0 https://www.encodeproject.org/files/ENCFF001LYL/@@download/ENCFF001LYL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMU/ released inconsistent platforms, inconsistent control read length control insufficient read depth ENCFF001LYN fastq reads ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 55 single-ended 4327640334 Ross Hardison, PennState 493b17b9718dc381d288868ec0e0d73d https://www.encodeproject.org/files/ENCFF001LYN/@@download/ENCFF001LYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001MMW/ released inconsistent platforms, inconsistent control read length control insufficient read depth ENCFF001YCI bed broadPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 693697 Ross Hardison, PennState 7162abd5a30d7001cf6b3e55c41ca917 https://www.encodeproject.org/files/ENCFF001YCI/@@download/ENCFF001YCI.bed.gz mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001YCJ bed broadPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 1 621764 Ross Hardison, PennState 0be6760f0c099d735cbe3f18ea71ccc9 https://www.encodeproject.org/files/ENCFF001YCJ/@@download/ENCFF001YCJ.bed.gz mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF001YCK bed broadPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 1 571957 Ross Hardison, PennState e6361824939fc05a0bbe6780cd8a5a61 https://www.encodeproject.org/files/ENCFF001YCK/@@download/ENCFF001YCK.bed.gz mm9 archived inconsistent platforms missing derived_from control insufficient read depth ENCFF916LZO bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF001LYL, ENCFF806TVZ 4316288905 ENCODE Processing Pipeline 40e4fbc1bfb1462587d2b412ff596c46 https://www.encodeproject.org/files/ENCFF916LZO/@@download/ENCFF916LZO.bam mm10-minimal archived inconsistent platforms control insufficient read depth ENCFF703FOJ bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF001LYN, ENCFF806TVZ 3377074647 ENCODE Processing Pipeline 0dc98e2b9ad27fc9279020c1c60fdf95 https://www.encodeproject.org/files/ENCFF703FOJ/@@download/ENCFF703FOJ.bam mm10-minimal archived inconsistent platforms control insufficient read depth ENCFF490MPT bam unfiltered alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYL, ENCFF018NEO 5080680116 ENCODE Processing Pipeline d4813a207d373fdbc0edf890a2ea24db https://www.encodeproject.org/files/ENCFF490MPT/@@download/ENCFF490MPT.bam mm10 released inconsistent platforms control insufficient read depth ENCFF406VIL bam unfiltered alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYN, ENCFF018NEO 4206025336 ENCODE Processing Pipeline d2ab858127ca0d63985b624aaa9d91c1 https://www.encodeproject.org/files/ENCFF406VIL/@@download/ENCFF406VIL.bam mm10 released inconsistent platforms control insufficient read depth ENCFF277KGU bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYL, ENCFF018NEO 3585429493 ENCODE Processing Pipeline cc84b0ed907bc8529f0d04934a9b0a51 https://www.encodeproject.org/files/ENCFF277KGU/@@download/ENCFF277KGU.bam mm10 released inconsistent platforms control insufficient read depth ENCFF246UVF bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYN, ENCFF018NEO 2746930204 ENCODE Processing Pipeline 6cbbb06fb08be7dfd1e5217d1e48ab6a https://www.encodeproject.org/files/ENCFF246UVF/@@download/ENCFF246UVF.bam mm10 released inconsistent platforms control insufficient read depth ENCFF827PLH bed narrowPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF277KGU, ENCFF381DCK, ENCFF887UBK 1408322 ENCODE Processing Pipeline 3e6e4f0df6d439a978a2ce978b0793d6 https://www.encodeproject.org/files/ENCFF827PLH/@@download/ENCFF827PLH.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF271MII bed narrowPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF246UVF, ENCFF277KGU, ENCFF381DCK, ENCFF887UBK 1237448 ENCODE Processing Pipeline 1be1da128af9dc7127fba85be37e5c49 https://www.encodeproject.org/files/ENCFF271MII/@@download/ENCFF271MII.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF782CHZ bigBed narrowPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF827PLH 3492818 ENCODE Processing Pipeline 9cca33c25a2a294a446757a977ed3905 https://www.encodeproject.org/files/ENCFF782CHZ/@@download/ENCFF782CHZ.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF656HVM bed narrowPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF246UVF, ENCFF381DCK 768827 ENCODE Processing Pipeline 0c3f19b66bd19bd436802f9d317b985a https://www.encodeproject.org/files/ENCFF656HVM/@@download/ENCFF656HVM.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF930WEC bigBed narrowPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF656HVM 1989312 ENCODE Processing Pipeline ea88962a3ac00301fe1b613bd87fe3bc https://www.encodeproject.org/files/ENCFF930WEC/@@download/ENCFF930WEC.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF244TLG bigBed narrowPeak peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF271MII 3029130 ENCODE Processing Pipeline 518d8ea1fb1b859ceebb076c93d5e28b https://www.encodeproject.org/files/ENCFF244TLG/@@download/ENCFF244TLG.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF489RTB bigWig signal p-value ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF277KGU, ENCFF381DCK, ENCFF887UBK 880949107 ENCODE Processing Pipeline c3bcee776348fdf3a9a70042ff3acf35 https://www.encodeproject.org/files/ENCFF489RTB/@@download/ENCFF489RTB.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF885NER bigWig signal p-value ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF246UVF, ENCFF381DCK 426803456 ENCODE Processing Pipeline e978046d7b922cfabc15191b1a109044 https://www.encodeproject.org/files/ENCFF885NER/@@download/ENCFF885NER.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF666CSZ bigWig signal p-value ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF246UVF, ENCFF277KGU, ENCFF381DCK, ENCFF887UBK 829789518 ENCODE Processing Pipeline 597b6b7ab5e025b9d22ca5012a1fa2c9 https://www.encodeproject.org/files/ENCFF666CSZ/@@download/ENCFF666CSZ.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF106WFA bigWig fold change over control ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 ENCFF277KGU, ENCFF381DCK, ENCFF887UBK 1161118275 ENCODE Processing Pipeline 6721f42e522851b486c9a7fe38a44121 https://www.encodeproject.org/files/ENCFF106WFA/@@download/ENCFF106WFA.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF901PCN bigWig fold change over control ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 ENCFF246UVF, ENCFF381DCK 805044303 ENCODE Processing Pipeline 48075355c8986b0c780a020e5b25a09a https://www.encodeproject.org/files/ENCFF901PCN/@@download/ENCFF901PCN.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF220KWG bigWig fold change over control ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF246UVF, ENCFF277KGU, ENCFF381DCK, ENCFF887UBK 1614309653 ENCODE Processing Pipeline b6fa7b4f8f3dcf93099889db6ef1667a https://www.encodeproject.org/files/ENCFF220KWG/@@download/ENCFF220KWG.bigWig mm10 released inconsistent platforms control insufficient read depth ENCFF170JQO bed narrowPeak replicated peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF271MII, ENCFF656HVM, ENCFF827PLH 1171316 ENCODE Processing Pipeline 98f0aeff1b75c13d5cb93560f65da981 https://www.encodeproject.org/files/ENCFF170JQO/@@download/ENCFF170JQO.bed.gz mm10 released inconsistent platforms control insufficient read depth ENCFF628BNF bigBed narrowPeak replicated peaks ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1, 2 ENCFF170JQO 2328712 ENCODE Processing Pipeline 21979f2d02c5650dc40472aeeca8e907 https://www.encodeproject.org/files/ENCFF628BNF/@@download/ENCFF628BNF.bigBed mm10 released inconsistent platforms control insufficient read depth ENCFF001ZHO fastq reads ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 1 45 single-ended 2259572146 Ross Hardison, PennState 8f4776c562ca8ed92b9fce5cc3dafc54 https://www.encodeproject.org/files/ENCFF001ZHO/@@download/ENCFF001ZHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGK/ released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZHP bigWig signal ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 1 5148769376 Ross Hardison, PennState 272e6326d75afc76c022cb54b7cc9ff5 https://www.encodeproject.org/files/ENCFF001ZHP/@@download/ENCFF001ZHP.bigWig mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO insufficient read depth ENCFF001ZHQ fastq reads ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 1 45 single-ended 1554168483 Ross Hardison, PennState 79d54c2f1e5a89a2a4c68230d61ea531 https://www.encodeproject.org/files/ENCFF001ZHQ/@@download/ENCFF001ZHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001ZGM/ released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZHR bigWig signal ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 1 4279005300 Ross Hardison, PennState f86787a85ab679f5dccec8607f08c184 https://www.encodeproject.org/files/ENCFF001ZHR/@@download/ENCFF001ZHR.bigWig mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO insufficient read depth ENCFF001ZHT bam alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 ENCFF001ZHO 2664666863 Ross Hardison, PennState 5c1029930b249d61d4174a1c7a19e1d2 https://www.encodeproject.org/files/ENCFF001ZHT/@@download/ENCFF001ZHT.bam mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZHU bam alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 ENCFF001ZHQ 1838373368 Ross Hardison, PennState e2415e32d27f68b8612ac3b27ab105bc https://www.encodeproject.org/files/ENCFF001ZHU/@@download/ENCFF001ZHU.bam mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001ZHV bigBed broadPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 1 1144636 Ross Hardison, PennState 0daaf0d1fc695e120594ddc44030afef https://www.encodeproject.org/files/ENCFF001ZHV/@@download/ENCFF001ZHV.bigBed mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF001ZHW bigBed broadPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 1 1284542 Ross Hardison, PennState 6100806c2840caea557c3f8038904668 https://www.encodeproject.org/files/ENCFF001ZHW/@@download/ENCFF001ZHW.bigBed mm9 released low read length, control low read depth missing derived_from, experiment not submitted to GEO insufficient read depth ENCFF001ZHS bigWig signal ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 5659172171 Ross Hardison, PennState 7315e1dcaea061738b249816b0a869af https://www.encodeproject.org/files/ENCFF001ZHS/@@download/ENCFF001ZHS.bigWig mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF001ZHX bigBed broadPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1288950 Ross Hardison, PennState 7d4bf2d78ba3ceddf5dd965bfe24b591 https://www.encodeproject.org/files/ENCFF001ZHX/@@download/ENCFF001ZHX.bigBed mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF001ZHY bam alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 4325992583 Ross Hardison, PennState 56974be680bc7276258f243fa1209456 https://www.encodeproject.org/files/ENCFF001ZHY/@@download/ENCFF001ZHY.bam mm9 released low read length, control low read depth experiment not submitted to GEO, missing derived_from insufficient read depth ENCFF951NLJ bed broadPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 1 ENCFF001ZHW 773395 ENCODE Consortium dfe806be8eee4f31d6944781a99bd3b6 https://www.encodeproject.org/files/ENCFF951NLJ/@@download/ENCFF951NLJ.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF916EVG bed broadPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE ENCFF001ZHX 777063 ENCODE Consortium 37ec668d829e60d42215cf9bfb374821 https://www.encodeproject.org/files/ENCFF916EVG/@@download/ENCFF916EVG.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF190WVY bed broadPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 1 ENCFF001ZHV 700692 ENCODE Consortium 0407dc2c36d36c0c3d139944eaf3a46b https://www.encodeproject.org/files/ENCFF190WVY/@@download/ENCFF190WVY.bed.gz mm9 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF741WDL bam unfiltered alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 45 ENCFF001ZHQ, ENCFF018NEO 2000676116 ENCODE Processing Pipeline 4b7a6a505869271f49e2e70687bf02c9 https://www.encodeproject.org/files/ENCFF741WDL/@@download/ENCFF741WDL.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF293NFT bam alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 45 ENCFF001ZHQ, ENCFF018NEO 1514755123 ENCODE Processing Pipeline c3bc554318c3ee9395962dab03c1ccb7 https://www.encodeproject.org/files/ENCFF293NFT/@@download/ENCFF293NFT.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF416SEQ bam unfiltered alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 45 ENCFF001ZHO, ENCFF018NEO 2904999243 ENCODE Processing Pipeline fb6193ed2036d41593ec3a099edf2b0d https://www.encodeproject.org/files/ENCFF416SEQ/@@download/ENCFF416SEQ.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF889PWY bam alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 45 ENCFF001ZHO, ENCFF018NEO 2180626925 ENCODE Processing Pipeline a8b9b5e8267399567c84505d4f19310e https://www.encodeproject.org/files/ENCFF889PWY/@@download/ENCFF889PWY.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF403FZZ bed narrowPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 ENCFF111OFQ, ENCFF293NFT 2879911 ENCODE Processing Pipeline 30fb0e97c64329e379496c6d082b8bce https://www.encodeproject.org/files/ENCFF403FZZ/@@download/ENCFF403FZZ.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF064BDI bigBed narrowPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 ENCFF724STV 6300160 ENCODE Processing Pipeline 90e410ac0e4cf6f7c45b8eb86a61c427 https://www.encodeproject.org/files/ENCFF064BDI/@@download/ENCFF064BDI.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF901RIF bigBed narrowPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 ENCFF403FZZ 6322779 ENCODE Processing Pipeline a82662e245d2670a84bafda1a3b70203 https://www.encodeproject.org/files/ENCFF901RIF/@@download/ENCFF901RIF.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF759WKW bed narrowPeak replicated peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1, 2 ENCFF403FZZ, ENCFF724STV, ENCFF972AQC 2725989 ENCODE Processing Pipeline 8d77e6efe041f2d0985313c9189d4067 https://www.encodeproject.org/files/ENCFF759WKW/@@download/ENCFF759WKW.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF038SGG bigBed narrowPeak replicated peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1, 2 ENCFF759WKW 4401454 ENCODE Processing Pipeline 6217680da15b66c4d75ec912bca10f82 https://www.encodeproject.org/files/ENCFF038SGG/@@download/ENCFF038SGG.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF389BLE bigBed narrowPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1, 2 ENCFF972AQC 6335255 ENCODE Processing Pipeline caea03aaba701a5a9a135e243ee177ca https://www.encodeproject.org/files/ENCFF389BLE/@@download/ENCFF389BLE.bigBed mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF848LEV bigWig signal p-value ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1, 2 ENCFF111OFQ, ENCFF293NFT, ENCFF666VRA, ENCFF889PWY 1160453529 ENCODE Processing Pipeline d2d6bc81284e52aee06781b7e980ef01 https://www.encodeproject.org/files/ENCFF848LEV/@@download/ENCFF848LEV.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF640LUK bigWig fold change over control ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF889PWY 911109056 ENCODE Processing Pipeline e42dd53b1e40747d0bbe606473853a35 https://www.encodeproject.org/files/ENCFF640LUK/@@download/ENCFF640LUK.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF724STV bed narrowPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF889PWY 2927771 ENCODE Processing Pipeline 910f4eaca83282c4ec080e9adea14d30 https://www.encodeproject.org/files/ENCFF724STV/@@download/ENCFF724STV.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF205MTB bigWig signal p-value ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 ENCFF111OFQ, ENCFF293NFT 618313489 ENCODE Processing Pipeline 44a7f54dcef63dd406ca8274189ba835 https://www.encodeproject.org/files/ENCFF205MTB/@@download/ENCFF205MTB.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF373SQN bigWig fold change over control ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 ENCFF111OFQ, ENCFF293NFT 557388755 ENCODE Processing Pipeline c15d4b0b86055ff642fdb064e49a2f9e https://www.encodeproject.org/files/ENCFF373SQN/@@download/ENCFF373SQN.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF972AQC bed narrowPeak peaks ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1, 2 ENCFF111OFQ, ENCFF293NFT, ENCFF666VRA, ENCFF889PWY 2925081 ENCODE Processing Pipeline 6a8b4128fb8745b26b92e5d0f18d8c82 https://www.encodeproject.org/files/ENCFF972AQC/@@download/ENCFF972AQC.bed.gz mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF831HLF bigWig signal p-value ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 ENCFF111OFQ, ENCFF666VRA, ENCFF889PWY 750351535 ENCODE Processing Pipeline fccb442c5d49c2ce31c3053a72b4de47 https://www.encodeproject.org/files/ENCFF831HLF/@@download/ENCFF831HLF.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF785WPG bigWig fold change over control ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1, 2 ENCFF111OFQ, ENCFF293NFT, ENCFF666VRA, ENCFF889PWY 1223461915 ENCODE Processing Pipeline 1abe96cce23b083097af6abe9dfcfc89 https://www.encodeproject.org/files/ENCFF785WPG/@@download/ENCFF785WPG.bigWig mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF001KKP bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KKY 361138846 Bing Ren, UCSD 77268689056deb10e6f15946a34b440b https://www.encodeproject.org/files/ENCFF001KKP/@@download/ENCFF001KKP.bam mm9 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF001KKQ bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLA 521873705 Bing Ren, UCSD c2ff0c7ffa2396589ee44362dfbbc930 https://www.encodeproject.org/files/ENCFF001KKQ/@@download/ENCFF001KKQ.bam mm9 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF001KKR bigBed broadPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXR 481079 Bing Ren, UCSD d57766495931555a9314264a2c212825 https://www.encodeproject.org/files/ENCFF001KKR/@@download/ENCFF001KKR.bigBed mm9 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF001KKU bigWig signal ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KKP, ENCFF001KKQ 63138348 Bing Ren, UCSD 6c3a6862c3d2cfdb61f00f8771f4f979 https://www.encodeproject.org/files/ENCFF001KKU/@@download/ENCFF001KKU.bigWig mm9 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF001KKY fastq reads ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 340760272 Bing Ren, UCSD e1ede1cec5da68b04d7954064d9933f9 https://www.encodeproject.org/files/ENCFF001KKY/@@download/ENCFF001KKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF044CWG/ archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF001KLA fastq reads ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 496274042 Bing Ren, UCSD a88f86cb67d7077cd9f700ca1e93106f https://www.encodeproject.org/files/ENCFF001KLA/@@download/ENCFF001KLA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KLI/ archived low read length, inconsistent platforms, control low read depth, inconsistent control read length missing unfiltered alignments insufficient read depth ENCFF001XXR bed broadPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KKP, ENCFF001KKQ 356665 Bing Ren, UCSD a31242ea20ae64f37673d9d80b90eff1 https://www.encodeproject.org/files/ENCFF001XXR/@@download/ENCFF001XXR.bed.gz mm9 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF250HEC bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KLA, ENCFF806TVZ 411270104 ENCODE Processing Pipeline d945648adb1a3ea7a7b36f9d1dae70cb https://www.encodeproject.org/files/ENCFF250HEC/@@download/ENCFF250HEC.bam mm10-minimal archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF182JYY bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KKY, ENCFF806TVZ 297738473 ENCODE Processing Pipeline 204d6faa6cb82ccca83e396113a219d2 https://www.encodeproject.org/files/ENCFF182JYY/@@download/ENCFF182JYY.bam mm10-minimal archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF244QCD bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KLA, ENCFF018NEO 411202546 ENCODE Processing Pipeline ec51e7225dea77755d491a9dbb1abd22 https://www.encodeproject.org/files/ENCFF244QCD/@@download/ENCFF244QCD.bam mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF422YAD bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KKY, ENCFF018NEO 297721264 ENCODE Processing Pipeline 574051b3a2451ff4752b89c3ee118beb https://www.encodeproject.org/files/ENCFF422YAD/@@download/ENCFF422YAD.bam mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF583HDG bed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380OBK, ENCFF422YAD, ENCFF688WNM 1332448 ENCODE Processing Pipeline 2ee472beedd5b6103e49817f71406aab https://www.encodeproject.org/files/ENCFF583HDG/@@download/ENCFF583HDG.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF060RVV bed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF244QCD, ENCFF380OBK, ENCFF688WNM 1298823 ENCODE Processing Pipeline 7b4e5dd0349d42d6d80326eeb63d04ed https://www.encodeproject.org/files/ENCFF060RVV/@@download/ENCFF060RVV.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF789BSQ bed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF244QCD, ENCFF380OBK, ENCFF422YAD, ENCFF688WNM 1502892 ENCODE Processing Pipeline f90ab23cb05d86356c7b04bc9fc5281d https://www.encodeproject.org/files/ENCFF789BSQ/@@download/ENCFF789BSQ.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF126EGN bigBed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF060RVV 4063454 ENCODE Processing Pipeline 84cc6c59f55bfcc9c48a00ba89126308 https://www.encodeproject.org/files/ENCFF126EGN/@@download/ENCFF126EGN.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF692LNE bigBed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF583HDG 4119866 ENCODE Processing Pipeline 84d0f8459a9b97633ac2adc4eb9d55f5 https://www.encodeproject.org/files/ENCFF692LNE/@@download/ENCFF692LNE.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF140ZUG bigWig signal p-value ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380OBK, ENCFF422YAD, ENCFF688WNM 285978449 ENCODE Processing Pipeline 8c739b68b2da48d975d34c66d8c23f55 https://www.encodeproject.org/files/ENCFF140ZUG/@@download/ENCFF140ZUG.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF849WVH bigBed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF789BSQ 4561501 ENCODE Processing Pipeline 39256f33a3853e624cfce8c0acd5113a https://www.encodeproject.org/files/ENCFF849WVH/@@download/ENCFF849WVH.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF872WIU bigWig signal p-value ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF244QCD, ENCFF380OBK, ENCFF422YAD, ENCFF688WNM 349666901 ENCODE Processing Pipeline aa98b21451ea92ce26704fe895a051ee https://www.encodeproject.org/files/ENCFF872WIU/@@download/ENCFF872WIU.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF765VUC bigWig signal p-value ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF244QCD, ENCFF380OBK, ENCFF688WNM 276254350 ENCODE Processing Pipeline a2065841b6779e881fd2ccf9d47b8c79 https://www.encodeproject.org/files/ENCFF765VUC/@@download/ENCFF765VUC.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF216VTK bigWig fold change over control ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF380OBK, ENCFF422YAD, ENCFF688WNM 167530550 ENCODE Processing Pipeline bb8eb4075dbee770d94274b0973a93df https://www.encodeproject.org/files/ENCFF216VTK/@@download/ENCFF216VTK.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF741JTT bigWig fold change over control ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF244QCD, ENCFF380OBK, ENCFF688WNM 215862726 ENCODE Processing Pipeline 29ae6f1b2ecec20929d7e23d94c9c221 https://www.encodeproject.org/files/ENCFF741JTT/@@download/ENCFF741JTT.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF772SBJ bigWig fold change over control ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF244QCD, ENCFF380OBK, ENCFF422YAD, ENCFF688WNM 322089184 ENCODE Processing Pipeline 234d2b9d570282e732fcb674e28d0750 https://www.encodeproject.org/files/ENCFF772SBJ/@@download/ENCFF772SBJ.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF050YRI bed narrowPeak replicated peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF060RVV, ENCFF583HDG, ENCFF789BSQ 1230522 ENCODE Processing Pipeline 827c066775bed8987c3170f139938d78 https://www.encodeproject.org/files/ENCFF050YRI/@@download/ENCFF050YRI.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF894MGC bigBed narrowPeak replicated peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF050YRI 2822627 ENCODE Processing Pipeline da392e2f991b8ca5f5aa7a01dd7b5a0c https://www.encodeproject.org/files/ENCFF894MGC/@@download/ENCFF894MGC.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF523ELH bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KKY, ENCFF018NEO 264604788 ENCODE Processing Pipeline 715ed5ea5c5dcc06258535e08939457c https://www.encodeproject.org/files/ENCFF523ELH/@@download/ENCFF523ELH.bam mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF110AZY bam unfiltered alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KKY, ENCFF018NEO 357412125 ENCODE Processing Pipeline c03a28ea911aad46d31233697c27606d https://www.encodeproject.org/files/ENCFF110AZY/@@download/ENCFF110AZY.bam mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF904LOC bam unfiltered alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KLA, ENCFF018NEO 514551236 ENCODE Processing Pipeline df12db2b8dd0b0e0d667b865ba213716 https://www.encodeproject.org/files/ENCFF904LOC/@@download/ENCFF904LOC.bam mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF584LUW bam alignments ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KLA, ENCFF018NEO 364738555 ENCODE Processing Pipeline 23cb2f2925eaf73a6b136c28dd2ea6b7 https://www.encodeproject.org/files/ENCFF584LUW/@@download/ENCFF584LUW.bam mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF185DPK bed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF420EJF, ENCFF523ELH, ENCFF688WNM 1239731 ENCODE Processing Pipeline 00f71bc067839d11207a28898ad9a1e9 https://www.encodeproject.org/files/ENCFF185DPK/@@download/ENCFF185DPK.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF983WBH bigBed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF021UQN 4464902 ENCODE Processing Pipeline f80fa969e621b3964057690b98fdc713 https://www.encodeproject.org/files/ENCFF983WBH/@@download/ENCFF983WBH.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF064BXC bigWig signal p-value ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF420EJF, ENCFF523ELH, ENCFF584LUW, ENCFF688WNM 318566004 ENCODE Processing Pipeline 295e44985954473ce30a686e8f6602e8 https://www.encodeproject.org/files/ENCFF064BXC/@@download/ENCFF064BXC.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF312VAI bed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF584LUW, ENCFF688WNM 1280063 ENCODE Processing Pipeline 4f96ed953df019935c02bac47d8306c8 https://www.encodeproject.org/files/ENCFF312VAI/@@download/ENCFF312VAI.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF021UQN bed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF420EJF, ENCFF523ELH, ENCFF584LUW, ENCFF688WNM 1470763 ENCODE Processing Pipeline 7da81de234c773a46050c86eb769cde5 https://www.encodeproject.org/files/ENCFF021UQN/@@download/ENCFF021UQN.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF651OCJ bigBed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF185DPK 3856437 ENCODE Processing Pipeline 0d9f3d55c141542b7e29835ddf46f344 https://www.encodeproject.org/files/ENCFF651OCJ/@@download/ENCFF651OCJ.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF077PYE bigBed narrowPeak peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF312VAI 4004363 ENCODE Processing Pipeline e1bb20fecb65d9a615be0b1459c529e0 https://www.encodeproject.org/files/ENCFF077PYE/@@download/ENCFF077PYE.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF789IGR bigWig signal p-value ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF420EJF, ENCFF523ELH, ENCFF688WNM 248706673 ENCODE Processing Pipeline 0fbbe38892ba946911b28e996062a488 https://www.encodeproject.org/files/ENCFF789IGR/@@download/ENCFF789IGR.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF295KLB bigWig signal p-value ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF584LUW, ENCFF688WNM 297533031 ENCODE Processing Pipeline 8f2eaeac187b8367515ad4dce6ad3295 https://www.encodeproject.org/files/ENCFF295KLB/@@download/ENCFF295KLB.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF231VSU bigWig fold change over control ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF420EJF, ENCFF523ELH, ENCFF688WNM 166169172 ENCODE Processing Pipeline 21098089ea8d54fafabe8fedf55d73e7 https://www.encodeproject.org/files/ENCFF231VSU/@@download/ENCFF231VSU.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF395MEX bigWig fold change over control ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF420EJF, ENCFF584LUW, ENCFF688WNM 214366936 ENCODE Processing Pipeline 551771212c00f6f8b81fd05071ff7cd9 https://www.encodeproject.org/files/ENCFF395MEX/@@download/ENCFF395MEX.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF973DHA bed narrowPeak replicated peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF021UQN, ENCFF185DPK, ENCFF312VAI 1218319 ENCODE Processing Pipeline 2a4bb917574792ca57dfce4b4df11fd0 https://www.encodeproject.org/files/ENCFF973DHA/@@download/ENCFF973DHA.bed.gz mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF018PJP bigBed narrowPeak replicated peaks ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF973DHA 2800808 ENCODE Processing Pipeline d7cb6da82cf86b06f91ff5f86a15ac27 https://www.encodeproject.org/files/ENCFF018PJP/@@download/ENCFF018PJP.bigBed mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF826POE bigWig fold change over control ENCSR000CCM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF420EJF, ENCFF523ELH, ENCFF584LUW, ENCFF688WNM 319211335 ENCODE Processing Pipeline 52494913440fd51cf1c4a6558e46d715 https://www.encodeproject.org/files/ENCFF826POE/@@download/ENCFF826POE.bigWig mm10 archived low read length, inconsistent platforms, control low read depth missing unfiltered alignments insufficient read depth ENCFF002ETU fastq reads ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 1474403946 Bing Ren, UCSD 69cc9dc7fa2523570753e1ebe9774f70 SRA:SRR3651736 https://www.encodeproject.org/files/ENCFF002ETU/@@download/ENCFF002ETU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXR/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF002ETY fastq reads ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 1502147452 Bing Ren, UCSD 3415a39567192062aad105bae56210f0 SRA:SRR3651735 https://www.encodeproject.org/files/ENCFF002ETY/@@download/ENCFF002ETY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXT/ released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF521PDA bam alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETU, ENCFF806TVZ 1074973589 ENCODE Processing Pipeline c6061ee0e0b019a1deec566974a8a57a https://www.encodeproject.org/files/ENCFF521PDA/@@download/ENCFF521PDA.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF013QNL bam alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETY, ENCFF806TVZ 1098169005 ENCODE Processing Pipeline 2b3e407ab0c46f3ecf7bd9ccdae19e44 https://www.encodeproject.org/files/ENCFF013QNL/@@download/ENCFF013QNL.bam mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF531TBO bigBed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF973RWK 4533650 ENCODE Processing Pipeline e0c6376effb005ada5f31f83991065c6 https://www.encodeproject.org/files/ENCFF531TBO/@@download/ENCFF531TBO.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF832IZK bed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF521PDA, ENCFF720BSQ 1598526 ENCODE Processing Pipeline d42260e855d5bfed6e6d402d0b9edab8 https://www.encodeproject.org/files/ENCFF832IZK/@@download/ENCFF832IZK.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF009QTP bed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF013QNL, ENCFF461NAJ 1602623 ENCODE Processing Pipeline 6cdde664ca2b567c13592eff4932cb0e https://www.encodeproject.org/files/ENCFF009QTP/@@download/ENCFF009QTP.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF973RWK bed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF013QNL, ENCFF461NAJ, ENCFF521PDA, ENCFF720BSQ 1732233 ENCODE Processing Pipeline 85365b2e3e7b7787f531941439f44dd8 https://www.encodeproject.org/files/ENCFF973RWK/@@download/ENCFF973RWK.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF618YXB bigWig signal p-value ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF013QNL, ENCFF461NAJ 366360971 ENCODE Processing Pipeline 19e5447e48860093bf26097af6445ab4 https://www.encodeproject.org/files/ENCFF618YXB/@@download/ENCFF618YXB.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF624NJW bigBed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF832IZK 3415134 ENCODE Processing Pipeline 96e961bb3f9f97a158164602e4ece928 https://www.encodeproject.org/files/ENCFF624NJW/@@download/ENCFF624NJW.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF035WVI bigWig signal p-value ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF521PDA, ENCFF720BSQ 678240321 ENCODE Processing Pipeline 3de4ededb8ad6db666919c34288dfd73 https://www.encodeproject.org/files/ENCFF035WVI/@@download/ENCFF035WVI.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF493WLF bigBed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF009QTP 3421399 ENCODE Processing Pipeline 7e8e169b3961b2d996714777a13f9762 https://www.encodeproject.org/files/ENCFF493WLF/@@download/ENCFF493WLF.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF156IRW bigWig signal p-value ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF013QNL, ENCFF461NAJ, ENCFF521PDA, ENCFF720BSQ 860470389 ENCODE Processing Pipeline d7357e67f35a65d405200954eba50909 https://www.encodeproject.org/files/ENCFF156IRW/@@download/ENCFF156IRW.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF613PZW bigBed narrowPeak replicated peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF669BWS 1922222 ENCODE Processing Pipeline 4857c61285c3ff5150edeb002951690b https://www.encodeproject.org/files/ENCFF613PZW/@@download/ENCFF613PZW.bigBed mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF669BWS bed narrowPeak replicated peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF009QTP, ENCFF832IZK, ENCFF973RWK 1092714 ENCODE Processing Pipeline fc74611a7eeb2ba15f02231660a5e915 https://www.encodeproject.org/files/ENCFF669BWS/@@download/ENCFF669BWS.bed.gz mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF960UNQ bigWig fold change over control ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF521PDA, ENCFF720BSQ 579939302 ENCODE Processing Pipeline 25700c1049e826d1ddb781f1b53cc9fe https://www.encodeproject.org/files/ENCFF960UNQ/@@download/ENCFF960UNQ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF179DWJ bigWig fold change over control ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF013QNL, ENCFF461NAJ, ENCFF521PDA, ENCFF720BSQ 863420828 ENCODE Processing Pipeline d6930152e34945589d6670f3fbcc5092 https://www.encodeproject.org/files/ENCFF179DWJ/@@download/ENCFF179DWJ.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF730UVI bigWig fold change over control ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF013QNL, ENCFF461NAJ 439306701 ENCODE Processing Pipeline 2439fd9ee2f785f15d63586c405d2332 https://www.encodeproject.org/files/ENCFF730UVI/@@download/ENCFF730UVI.bigWig mm10-minimal archived low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF946GAW bam alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETY, ENCFF018NEO 1097795374 ENCODE Processing Pipeline 554b137aaa7879f756c2014d42bf8edb https://www.encodeproject.org/files/ENCFF946GAW/@@download/ENCFF946GAW.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF953OFW bam unfiltered alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETY, ENCFF018NEO 1910938591 ENCODE Processing Pipeline ee62426bfd84dd570f5581c11456e299 https://www.encodeproject.org/files/ENCFF953OFW/@@download/ENCFF953OFW.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF612PWC bam unfiltered alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETU, ENCFF018NEO 1879101249 ENCODE Processing Pipeline 6cd16a161ff4decad3f1e5ec62d0df14 https://www.encodeproject.org/files/ENCFF612PWC/@@download/ENCFF612PWC.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF260XKJ bam alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETU, ENCFF018NEO 1074618555 ENCODE Processing Pipeline 4b5907aa4529acc4b89dcd28889c231e https://www.encodeproject.org/files/ENCFF260XKJ/@@download/ENCFF260XKJ.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF546LXT bed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF946GAW 1603526 ENCODE Processing Pipeline a249ba500a679d0ef8b48b9318e4c45c https://www.encodeproject.org/files/ENCFF546LXT/@@download/ENCFF546LXT.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF975HXU bed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF260XKJ, ENCFF568KLX, ENCFF631VBQ 1591779 ENCODE Processing Pipeline e962d0708a344f34ac1db1b9ba20a22c https://www.encodeproject.org/files/ENCFF975HXU/@@download/ENCFF975HXU.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF969IDR bed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF260XKJ, ENCFF568KLX, ENCFF631VBQ, ENCFF946GAW 1874113 ENCODE Processing Pipeline f583208fda0624bcd01912621396df18 https://www.encodeproject.org/files/ENCFF969IDR/@@download/ENCFF969IDR.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF485BDP bigBed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF975HXU 3378030 ENCODE Processing Pipeline 9089ba653acb49d893a01eb15cf65a50 https://www.encodeproject.org/files/ENCFF485BDP/@@download/ENCFF485BDP.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF297WSR bigBed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF546LXT 3423041 ENCODE Processing Pipeline 2265fbe0f4606774750bac9c2f649d33 https://www.encodeproject.org/files/ENCFF297WSR/@@download/ENCFF297WSR.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF343UHI bigBed narrowPeak peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF969IDR 3830132 ENCODE Processing Pipeline 6c0343e205b6fd7e1dae6b1085010b7e https://www.encodeproject.org/files/ENCFF343UHI/@@download/ENCFF343UHI.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF729RKT bigWig signal p-value ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF260XKJ, ENCFF568KLX, ENCFF631VBQ 621931337 ENCODE Processing Pipeline 62998f4e0f1cf480083de24dc1f0f25f https://www.encodeproject.org/files/ENCFF729RKT/@@download/ENCFF729RKT.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF676PLN bigWig signal p-value ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF946GAW 344812352 ENCODE Processing Pipeline 514ace674e449ed2cc0dd1bce3625f16 https://www.encodeproject.org/files/ENCFF676PLN/@@download/ENCFF676PLN.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF146SIV bigWig signal p-value ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF260XKJ, ENCFF568KLX, ENCFF631VBQ, ENCFF946GAW 883033354 ENCODE Processing Pipeline b3a183f678a6c4174abe0de8cb859c7b https://www.encodeproject.org/files/ENCFF146SIV/@@download/ENCFF146SIV.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF257AOY bigWig fold change over control ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF260XKJ, ENCFF568KLX, ENCFF631VBQ 557935026 ENCODE Processing Pipeline 58624ea901c50e7318810ce38b30b71c https://www.encodeproject.org/files/ENCFF257AOY/@@download/ENCFF257AOY.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF961TMO bigWig fold change over control ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF631VBQ, ENCFF946GAW 439564564 ENCODE Processing Pipeline 9d89daf7f9e92cbed0b699817665871b https://www.encodeproject.org/files/ENCFF961TMO/@@download/ENCFF961TMO.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF353QFF bigWig fold change over control ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF260XKJ, ENCFF568KLX, ENCFF631VBQ, ENCFF946GAW 879475334 ENCODE Processing Pipeline 7555135076b341cbd7827699ec0f9019 https://www.encodeproject.org/files/ENCFF353QFF/@@download/ENCFF353QFF.bigWig mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF248XFL bed narrowPeak replicated peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF546LXT, ENCFF969IDR, ENCFF975HXU 1083362 ENCODE Processing Pipeline e478ee4061b1cb734daddcda5d5ef246 https://www.encodeproject.org/files/ENCFF248XFL/@@download/ENCFF248XFL.bed.gz mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF988RTN bigBed narrowPeak replicated peaks ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF248XFL 1934874 ENCODE Processing Pipeline c365452ed792750ebc6c4679c0021c8a https://www.encodeproject.org/files/ENCFF988RTN/@@download/ENCFF988RTN.bigBed mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF001KXG bam alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KXR 343520532 Bing Ren, UCSD cc2f47977eeab2489a789dc4f1f77fe8 https://www.encodeproject.org/files/ENCFF001KXG/@@download/ENCFF001KXG.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KXH bigBed broadPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XZJ 960691 Bing Ren, UCSD 8f86126d92576043255ab23bd3e03059 https://www.encodeproject.org/files/ENCFF001KXH/@@download/ENCFF001KXH.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KXJ bam alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KXT 366986775 Bing Ren, UCSD 24b93ebff7484faa295224c4cbfbf50e https://www.encodeproject.org/files/ENCFF001KXJ/@@download/ENCFF001KXJ.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KXK bigWig signal ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KXG, ENCFF001KXJ 45633370 Bing Ren, UCSD a5c4bfa8e67ccac1e831043b36bce5f7 https://www.encodeproject.org/files/ENCFF001KXK/@@download/ENCFF001KXK.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KXR fastq reads ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 411623623 Bing Ren, UCSD 06bae220feb65a656b97b3ca8da89dde https://www.encodeproject.org/files/ENCFF001KXR/@@download/ENCFF001KXR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYT/ released low read length insufficient read depth, control insufficient read depth ENCFF001KXT fastq reads ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 416633493 Bing Ren, UCSD e6d19d1328e7f6eae2ab5d49affe9a6a https://www.encodeproject.org/files/ENCFF001KXT/@@download/ENCFF001KXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KYS/ released low read length insufficient read depth, control insufficient read depth ENCFF001XZJ bed broadPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KXG, ENCFF001KXJ 623623 Bing Ren, UCSD 9d0eb2d80610f21f47bda169ac75bdbc https://www.encodeproject.org/files/ENCFF001XZJ/@@download/ENCFF001XZJ.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF576VDI bam unfiltered alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXR, ENCFF018NEO 449065718 ENCODE Processing Pipeline e658ac96d2fb123c84d1a71f661218ac https://www.encodeproject.org/files/ENCFF576VDI/@@download/ENCFF576VDI.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF409OTC bam unfiltered alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXT, ENCFF018NEO 465056389 ENCODE Processing Pipeline 975711e6b881604ecef2e423b9b4144d https://www.encodeproject.org/files/ENCFF409OTC/@@download/ENCFF409OTC.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF893QVU bam alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXT, ENCFF018NEO 365889944 ENCODE Processing Pipeline 9905689b691f3c2470497deb61e66281 https://www.encodeproject.org/files/ENCFF893QVU/@@download/ENCFF893QVU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF786IBN bam alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXR, ENCFF018NEO 312083787 ENCODE Processing Pipeline 3090dbfbecf23d7ee9717e0aa63841f5 https://www.encodeproject.org/files/ENCFF786IBN/@@download/ENCFF786IBN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF644NRS bed narrowPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF786IBN, ENCFF893QVU 2514856 ENCODE Processing Pipeline 44dd43010235463bc8197e9fe3d84deb https://www.encodeproject.org/files/ENCFF644NRS/@@download/ENCFF644NRS.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF716SEZ bigBed narrowPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF124WTD 6277205 ENCODE Processing Pipeline 5a841dc8dbdf936454e5207f49c4f6a9 https://www.encodeproject.org/files/ENCFF716SEZ/@@download/ENCFF716SEZ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF237ECT bed narrowPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF786IBN 2017668 ENCODE Processing Pipeline f18aba69f7cb7f6544d1eec991012c05 https://www.encodeproject.org/files/ENCFF237ECT/@@download/ENCFF237ECT.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF833GNA bigBed narrowPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF644NRS 6838957 ENCODE Processing Pipeline 8cc4bd2045f3e4f76ed06d03cec367f2 https://www.encodeproject.org/files/ENCFF833GNA/@@download/ENCFF833GNA.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF875OZV bigBed narrowPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF237ECT 5699684 ENCODE Processing Pipeline 146eef8fea6b3b6bc34402ae55a337c2 https://www.encodeproject.org/files/ENCFF875OZV/@@download/ENCFF875OZV.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF124WTD bed narrowPeak peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF347BCY, ENCFF893QVU 2234596 ENCODE Processing Pipeline 329150d5bb3a7b57bc02acd58afa99e9 https://www.encodeproject.org/files/ENCFF124WTD/@@download/ENCFF124WTD.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF803KGP bigWig signal p-value ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF786IBN 232628108 ENCODE Processing Pipeline 30153b05e14487baa6ff95595f6b490a https://www.encodeproject.org/files/ENCFF803KGP/@@download/ENCFF803KGP.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF215HTK bigWig signal p-value ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF347BCY, ENCFF893QVU 228289714 ENCODE Processing Pipeline 8dfa3141a513bfc88722260a3b12fcf2 https://www.encodeproject.org/files/ENCFF215HTK/@@download/ENCFF215HTK.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF980MVZ bigWig signal p-value ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF786IBN, ENCFF893QVU 399341142 ENCODE Processing Pipeline ac2bad2ff58bc96c0c85b961b563cb9f https://www.encodeproject.org/files/ENCFF980MVZ/@@download/ENCFF980MVZ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF815XJY bigWig fold change over control ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF283CTW, ENCFF786IBN 145940163 ENCODE Processing Pipeline 105d3ac8cb2289817135e36abaa89fb9 https://www.encodeproject.org/files/ENCFF815XJY/@@download/ENCFF815XJY.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF666XCJ bigWig fold change over control ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF786IBN, ENCFF893QVU 321842438 ENCODE Processing Pipeline 391c35ccaa0435cd1b701db9c412bce2 https://www.encodeproject.org/files/ENCFF666XCJ/@@download/ENCFF666XCJ.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF605BRI bigWig fold change over control ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF347BCY, ENCFF893QVU 164789147 ENCODE Processing Pipeline 6f328391b155dc2c18c698a2eb506150 https://www.encodeproject.org/files/ENCFF605BRI/@@download/ENCFF605BRI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF415QAM bed narrowPeak replicated peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF124WTD, ENCFF237ECT, ENCFF644NRS 2404070 ENCODE Processing Pipeline fed852c93900d287c0c07e1659f4b03c https://www.encodeproject.org/files/ENCFF415QAM/@@download/ENCFF415QAM.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF507FFQ bigBed narrowPeak replicated peaks ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF415QAM 4606530 ENCODE Processing Pipeline afab89a991af6271c727fcc680c40920 https://www.encodeproject.org/files/ENCFF507FFQ/@@download/ENCFF507FFQ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001ZGK fastq reads ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 1 1 45 single-ended 2374845582 Ross Hardison, PennState 15b1b14c1beb5427de9d5c526180be25 https://www.encodeproject.org/files/ENCFF001ZGK/@@download/ENCFF001ZGK.fastq.gz Illumina HiSeq 2000 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF001ZGL bigWig signal ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 1 1 5622905341 Ross Hardison, PennState c97cd6a7cc809785760f8898fcfac0e7 https://www.encodeproject.org/files/ENCFF001ZGL/@@download/ENCFF001ZGL.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF001ZGM fastq reads ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 2 1 45 single-ended 2248106356 Ross Hardison, PennState 8dc9d204f2bb9273e1992e173e2d1a81 https://www.encodeproject.org/files/ENCFF001ZGM/@@download/ENCFF001ZGM.fastq.gz Illumina HiSeq 2000 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF001ZGN bigWig signal ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 2 1 5597209627 Ross Hardison, PennState f38d7b19302663f8cbcc68501c197c13 https://www.encodeproject.org/files/ENCFF001ZGN/@@download/ENCFF001ZGN.bigWig mm9 released low read length experiment not submitted to GEO, missing derived_from, insufficient read depth for broad peaks control ENCFF001ZGO bam alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 1 ENCFF001ZGK 2988920001 Ross Hardison, PennState c7604821f8d5a01cbedc6ca6b4632a6f https://www.encodeproject.org/files/ENCFF001ZGO/@@download/ENCFF001ZGO.bam mm9 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF001ZGP bam alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 2 ENCFF001ZGM 2843679698 Ross Hardison, PennState 95e2811596345359648c0a48c4cbb37b https://www.encodeproject.org/files/ENCFF001ZGP/@@download/ENCFF001ZGP.bam mm9 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF001ZGQ bam alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 5740230731 Ross Hardison, PennState d72a1e533f2850001face5ad476a2aee https://www.encodeproject.org/files/ENCFF001ZGQ/@@download/ENCFF001ZGQ.bam mm9 released low read length missing derived_from, experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF001ZGR bigWig signal ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 6161232251 Ross Hardison, PennState 40911dfc01554387dbe41000684422fa https://www.encodeproject.org/files/ENCFF001ZGR/@@download/ENCFF001ZGR.bigWig mm9 released low read length missing derived_from, experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF065YVW bam unfiltered alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 1 ENCFF001ZGK, ENCFF806TVZ 3180249189 J. Michael Cherry, Stanford d67a80d044c110147aaf1eb9fdd52539 https://www.encodeproject.org/files/ENCFF065YVW/@@download/ENCFF065YVW.bam mm10-minimal archived low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF148NDK bam unfiltered alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 2 ENCFF001ZGM, ENCFF806TVZ 3025729204 J. Michael Cherry, Stanford 903d72c337b9ec8964e0eeb1da650759 https://www.encodeproject.org/files/ENCFF148NDK/@@download/ENCFF148NDK.bam mm10-minimal archived low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF111OFQ bam alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 2 45 ENCFF001ZGM, ENCFF018NEO 2189748683 ENCODE Processing Pipeline 02195c52fd314490fc5dfe1831de1146 https://www.encodeproject.org/files/ENCFF111OFQ/@@download/ENCFF111OFQ.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF666VRA bam alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 1 45 ENCFF001ZGK, ENCFF018NEO 2250226951 ENCODE Processing Pipeline 8344abf6d2e8958c1d12a119c6cab477 https://www.encodeproject.org/files/ENCFF666VRA/@@download/ENCFF666VRA.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF452JQI bam unfiltered alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 1 45 ENCFF001ZGK, ENCFF018NEO 3183595126 ENCODE Processing Pipeline 8a1103711fdb5cf3fd8a60565c78b652 https://www.encodeproject.org/files/ENCFF452JQI/@@download/ENCFF452JQI.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF903RYX bam unfiltered alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 2 45 ENCFF001ZGM, ENCFF018NEO 3028849520 ENCODE Processing Pipeline b07b52ab4082934ea4f33888a688484a https://www.encodeproject.org/files/ENCFF903RYX/@@download/ENCFF903RYX.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF086ELT fastq reads ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 2 50 single-ended 1056810200 Bing Ren, UCSD 6b1b5d15491b478474983947aa966393 SRA:SRR3651313 https://www.encodeproject.org/files/ENCFF086ELT/@@download/ENCFF086ELT.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF450OVU fastq reads ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 2800426876 Bing Ren, UCSD f517e4d2aac9f29dbdf696196dd75b1b SRA:SRR3651314 https://www.encodeproject.org/files/ENCFF450OVU/@@download/ENCFF450OVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF121OIR fastq reads ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 1872542311 Bing Ren, UCSD b18b1f6d961c97064bc4a18d76dc472c SRA:SRR3651315 https://www.encodeproject.org/files/ENCFF121OIR/@@download/ENCFF121OIR.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF528YYP fastq reads ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 1420288259 Bing Ren, UCSD 4d499772bf538820472f3e641dcc61bf SRA:SRR3651316 https://www.encodeproject.org/files/ENCFF528YYP/@@download/ENCFF528YYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF141YAY bam alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF086ELT, ENCFF450OVU, ENCFF806TVZ 3271897798 ENCODE Processing Pipeline d34fbff319e2f6cc8991bd5c42144fa9 https://www.encodeproject.org/files/ENCFF141YAY/@@download/ENCFF141YAY.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF249UZW bam alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF121OIR, ENCFF528YYP, ENCFF806TVZ 2904976922 ENCODE Processing Pipeline 963f7ce946755300bde13a6640ac4bb5 https://www.encodeproject.org/files/ENCFF249UZW/@@download/ENCFF249UZW.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF003NOW bed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF141YAY, ENCFF478WUL 1087158 ENCODE Processing Pipeline bce8cfbfc282b47311947116b23afbdb https://www.encodeproject.org/files/ENCFF003NOW/@@download/ENCFF003NOW.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF394QZH bed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF141YAY, ENCFF249UZW, ENCFF478WUL 992017 ENCODE Processing Pipeline dfb9b147ea043ab825c38a226e5179b3 https://www.encodeproject.org/files/ENCFF394QZH/@@download/ENCFF394QZH.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF248AIK bigBed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF003NOW 2392744 ENCODE Processing Pipeline 0337a88662c67f5e60139c9e405dd5fe https://www.encodeproject.org/files/ENCFF248AIK/@@download/ENCFF248AIK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF859GOS bed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF249UZW, ENCFF478WUL 1303267 ENCODE Processing Pipeline 962d98255cc28fd0e238ebbf4cd7513b https://www.encodeproject.org/files/ENCFF859GOS/@@download/ENCFF859GOS.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF594MWK bigBed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF859GOS 2788852 ENCODE Processing Pipeline 582dcbb55e944d37da6ffd90bb2f8594 https://www.encodeproject.org/files/ENCFF594MWK/@@download/ENCFF594MWK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF734VNY bigBed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF394QZH 2070114 ENCODE Processing Pipeline e29ae797cfb767a72b372ac129138810 https://www.encodeproject.org/files/ENCFF734VNY/@@download/ENCFF734VNY.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF905HYL bigWig signal p-value ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF141YAY, ENCFF478WUL 882622332 ENCODE Processing Pipeline cdf615c2919f5ef1f7d1c76bc47f1ba8 https://www.encodeproject.org/files/ENCFF905HYL/@@download/ENCFF905HYL.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF999FCH bigWig signal p-value ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF249UZW, ENCFF478WUL 1000180594 ENCODE Processing Pipeline a3c051a2a154d680593c7f1b12bae9bb https://www.encodeproject.org/files/ENCFF999FCH/@@download/ENCFF999FCH.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF789FBV bigWig signal p-value ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF141YAY, ENCFF249UZW, ENCFF478WUL 1330989375 ENCODE Processing Pipeline 16ab4024e328ebe08285f2609f9cc252 https://www.encodeproject.org/files/ENCFF789FBV/@@download/ENCFF789FBV.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF036XJP bigWig fold change over control ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF141YAY, ENCFF478WUL 1132166204 ENCODE Processing Pipeline b7bcbe3454859478046bd7c5ea874c46 https://www.encodeproject.org/files/ENCFF036XJP/@@download/ENCFF036XJP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF530ZTP bigWig fold change over control ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF087UEM, ENCFF249UZW, ENCFF478WUL 1074795662 ENCODE Processing Pipeline 21de9320280cd479afa3ff82a61d752e https://www.encodeproject.org/files/ENCFF530ZTP/@@download/ENCFF530ZTP.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF961SXD bigBed narrowPeak replicated peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF084JZG 1506455 ENCODE Processing Pipeline 763b81561771e8d1a1db7a7e05f28994 https://www.encodeproject.org/files/ENCFF961SXD/@@download/ENCFF961SXD.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF138NNQ bigWig fold change over control ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF087UEM, ENCFF141YAY, ENCFF249UZW, ENCFF478WUL 1609924129 ENCODE Processing Pipeline 92151eaec8b7be759378c7e74708d327 https://www.encodeproject.org/files/ENCFF138NNQ/@@download/ENCFF138NNQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF084JZG bed narrowPeak replicated peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF003NOW, ENCFF394QZH, ENCFF859GOS 650673 ENCODE Processing Pipeline bc9d10745299c6b487b25ecc59231cef https://www.encodeproject.org/files/ENCFF084JZG/@@download/ENCFF084JZG.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF803PHH bam unfiltered alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF121OIR, ENCFF528YYP 3961487263 ENCODE Processing Pipeline 4e0f17f13c94fa68fe01a6b42c385eaa https://www.encodeproject.org/files/ENCFF803PHH/@@download/ENCFF803PHH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF853FDK bam unfiltered alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF086ELT, ENCFF450OVU 4612658291 ENCODE Processing Pipeline 8eb7325d621d92efed0f4cf8f7d539fa https://www.encodeproject.org/files/ENCFF853FDK/@@download/ENCFF853FDK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF053HNE bam alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF121OIR, ENCFF528YYP 2904402719 ENCODE Processing Pipeline 648e88fdcf7d647758c94c4de7031aef https://www.encodeproject.org/files/ENCFF053HNE/@@download/ENCFF053HNE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF681HVX bam alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF086ELT, ENCFF450OVU 3271256099 ENCODE Processing Pipeline 47e75f0cd7334e3bfb569b1ee3f9b212 https://www.encodeproject.org/files/ENCFF681HVX/@@download/ENCFF681HVX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF086EEQ bigBed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF440LVW 2646830 ENCODE Processing Pipeline 7af853b19e9afebb11a71e4f0d4a17a9 https://www.encodeproject.org/files/ENCFF086EEQ/@@download/ENCFF086EEQ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF440LVW bed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF681HVX, ENCFF708TTS 1219740 ENCODE Processing Pipeline c871bc6f478eb58191a510ea9c5761f5 https://www.encodeproject.org/files/ENCFF440LVW/@@download/ENCFF440LVW.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF341UIQ bed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF053HNE, ENCFF708TTS 1345464 ENCODE Processing Pipeline f16cdbdf5e359734657177408f81b686 https://www.encodeproject.org/files/ENCFF341UIQ/@@download/ENCFF341UIQ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF629VLG bed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF053HNE, ENCFF556BOJ, ENCFF681HVX, ENCFF708TTS 1337029 ENCODE Processing Pipeline e7232e307add68f04e5270783d357001 https://www.encodeproject.org/files/ENCFF629VLG/@@download/ENCFF629VLG.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF979ZTW bigBed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF341UIQ 2844886 ENCODE Processing Pipeline ff9d7f78c48894ab15370f7df831ef85 https://www.encodeproject.org/files/ENCFF979ZTW/@@download/ENCFF979ZTW.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF955YDA bigBed narrowPeak peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF629VLG 2754001 ENCODE Processing Pipeline b85e7535138c7b0d31ca62b7d41b4c8a https://www.encodeproject.org/files/ENCFF955YDA/@@download/ENCFF955YDA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF545UJT bigWig signal p-value ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF681HVX, ENCFF708TTS 1038793638 ENCODE Processing Pipeline 2b6921e530d92f55d90c6677c53418e3 https://www.encodeproject.org/files/ENCFF545UJT/@@download/ENCFF545UJT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF238MEW bigWig signal p-value ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF053HNE, ENCFF708TTS 675735763 ENCODE Processing Pipeline abb76dccbcb3ca8c99989b9af48d9a08 https://www.encodeproject.org/files/ENCFF238MEW/@@download/ENCFF238MEW.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF670FLB bigWig signal p-value ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF053HNE, ENCFF556BOJ, ENCFF681HVX, ENCFF708TTS 1669230008 ENCODE Processing Pipeline 6d17e0e39ce580d73774edc92567cbff https://www.encodeproject.org/files/ENCFF670FLB/@@download/ENCFF670FLB.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF377EVV bigWig fold change over control ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF681HVX, ENCFF708TTS 1179992428 ENCODE Processing Pipeline 4bc096942d169edfbcd968ba647c5117 https://www.encodeproject.org/files/ENCFF377EVV/@@download/ENCFF377EVV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF531CCL bigWig fold change over control ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF053HNE, ENCFF708TTS 902228449 ENCODE Processing Pipeline dbcc86db7893a2c0d7b5335473550afa https://www.encodeproject.org/files/ENCFF531CCL/@@download/ENCFF531CCL.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF944UBT bigWig fold change over control ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF053HNE, ENCFF556BOJ, ENCFF681HVX, ENCFF708TTS 1679267215 ENCODE Processing Pipeline 5335a569d1daf356336c46ab8aa753b5 https://www.encodeproject.org/files/ENCFF944UBT/@@download/ENCFF944UBT.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF854XLG bed narrowPeak replicated peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF341UIQ, ENCFF440LVW, ENCFF629VLG 692433 ENCODE Processing Pipeline a334ab184a11e4a508734bc58854f26e https://www.encodeproject.org/files/ENCFF854XLG/@@download/ENCFF854XLG.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF909FYG bigBed narrowPeak replicated peaks ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF854XLG 1588093 ENCODE Processing Pipeline ab189c6f5e5da81f58af8cb19df4b6b2 https://www.encodeproject.org/files/ENCFF909FYG/@@download/ENCFF909FYG.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KNU bam alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KOJ 395735697 Bing Ren, UCSD 38b1ed8add7152603787bb38daef8ae6 https://www.encodeproject.org/files/ENCFF001KNU/@@download/ENCFF001KNU.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KNV bam alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KOO 540344960 Bing Ren, UCSD c92d42f6d53b18aaf5d8fa7ef4800104 https://www.encodeproject.org/files/ENCFF001KNV/@@download/ENCFF001KNV.bam mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KNW bigBed broadPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001XYC 1872458 Bing Ren, UCSD 8a88bc0cfb648861e9f1a685bc0905b6 https://www.encodeproject.org/files/ENCFF001KNW/@@download/ENCFF001KNW.bigBed mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KOA bigWig signal ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KNU, ENCFF001KNV 52886333 Bing Ren, UCSD a6a344139eb460e1090c87c5022632b0 https://www.encodeproject.org/files/ENCFF001KOA/@@download/ENCFF001KOA.bigWig mm9 released low read length insufficient read depth, control insufficient read depth ENCFF001KOJ fastq reads ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 649875535 Bing Ren, UCSD f9dc1541f5eea65281c72e501c1713e5 https://www.encodeproject.org/files/ENCFF001KOJ/@@download/ENCFF001KOJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOQ/ released low read length insufficient read depth, control insufficient read depth ENCFF001KOO fastq reads ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 806570320 Bing Ren, UCSD 05b58631b5f650c37004eb1a0ae01c71 https://www.encodeproject.org/files/ENCFF001KOO/@@download/ENCFF001KOO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOV/ released low read length insufficient read depth, control insufficient read depth ENCFF001XYC bed broadPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KNU, ENCFF001KNV 1008640 Bing Ren, UCSD 3d93788ee74f25475753303a1aebd30e https://www.encodeproject.org/files/ENCFF001XYC/@@download/ENCFF001XYC.bed.gz mm9 released low read length insufficient read depth, control insufficient read depth ENCFF600WKP bam unfiltered alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KOJ, ENCFF018NEO 721407946 ENCODE Processing Pipeline 936e6b2916a06eb2c447d1c3af1b2c3d https://www.encodeproject.org/files/ENCFF600WKP/@@download/ENCFF600WKP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF753WJV bam unfiltered alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KOO, ENCFF018NEO 902471288 ENCODE Processing Pipeline 3c0f650d0b3940e2ef289a71ce923910 https://www.encodeproject.org/files/ENCFF753WJV/@@download/ENCFF753WJV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF884QXU bam alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KOO, ENCFF018NEO 569225295 ENCODE Processing Pipeline 0728788534f080c30bf9c64b66a9f4ce https://www.encodeproject.org/files/ENCFF884QXU/@@download/ENCFF884QXU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF155RPN bam alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KOJ, ENCFF018NEO 420236467 ENCODE Processing Pipeline 0f05ef837805668af00991c939f5b64c https://www.encodeproject.org/files/ENCFF155RPN/@@download/ENCFF155RPN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF876WQP bigBed narrowPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF582IWI 6276631 ENCODE Processing Pipeline 46398d8c3bc7e6c199607f1c0a466a66 https://www.encodeproject.org/files/ENCFF876WQP/@@download/ENCFF876WQP.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF582IWI bed narrowPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF155RPN, ENCFF493MBH, ENCFF738EUE 2785975 ENCODE Processing Pipeline 5a849463a82cf5dce1519fa40b04a819 https://www.encodeproject.org/files/ENCFF582IWI/@@download/ENCFF582IWI.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF589WZR bed narrowPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF493MBH, ENCFF738EUE, ENCFF884QXU 1908312 ENCODE Processing Pipeline 56404e0e61c2bf21a2ee9134f277be23 https://www.encodeproject.org/files/ENCFF589WZR/@@download/ENCFF589WZR.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF197IPI bed narrowPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF155RPN, ENCFF493MBH, ENCFF738EUE, ENCFF884QXU 1808292 ENCODE Processing Pipeline c82b0605e1eef3edd7204340b0ae7858 https://www.encodeproject.org/files/ENCFF197IPI/@@download/ENCFF197IPI.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF566JXZ bigBed narrowPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF589WZR 4756350 ENCODE Processing Pipeline 263c8c4d01458fb1dd9a42fd88a5d008 https://www.encodeproject.org/files/ENCFF566JXZ/@@download/ENCFF566JXZ.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF430GUK bigBed narrowPeak peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF197IPI 4369851 ENCODE Processing Pipeline 274b980a912bd1efb241f5a25075ccd6 https://www.encodeproject.org/files/ENCFF430GUK/@@download/ENCFF430GUK.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF177GCM bigWig signal p-value ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF155RPN, ENCFF493MBH, ENCFF738EUE 227008392 ENCODE Processing Pipeline 4f08148e2f57b2e660bb07074b0ae9e2 https://www.encodeproject.org/files/ENCFF177GCM/@@download/ENCFF177GCM.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF651JNI bigWig signal p-value ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF493MBH, ENCFF738EUE, ENCFF884QXU 245410566 ENCODE Processing Pipeline 7a9bd87b71c12b78a89f0bda7d0f4c0c https://www.encodeproject.org/files/ENCFF651JNI/@@download/ENCFF651JNI.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF400EFH bigWig signal p-value ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF155RPN, ENCFF493MBH, ENCFF738EUE, ENCFF884QXU 258688911 ENCODE Processing Pipeline 703180c9a5b94fe270b3bc2b6d3a7743 https://www.encodeproject.org/files/ENCFF400EFH/@@download/ENCFF400EFH.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF241DPD bigWig fold change over control ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF155RPN, ENCFF493MBH, ENCFF738EUE 159967012 ENCODE Processing Pipeline cfe5a45a28e72d4b608f463f9e146318 https://www.encodeproject.org/files/ENCFF241DPD/@@download/ENCFF241DPD.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF865RFC bed narrowPeak replicated peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF197IPI, ENCFF582IWI, ENCFF589WZR 1878716 ENCODE Processing Pipeline a2aa54264c68a4a2bdd17dd00505c3e6 https://www.encodeproject.org/files/ENCFF865RFC/@@download/ENCFF865RFC.bed.gz mm10 released low read length insufficient read depth, control insufficient read depth ENCFF685VCG bigWig fold change over control ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF493MBH, ENCFF738EUE, ENCFF884QXU 191743427 ENCODE Processing Pipeline 40469db78a9cc14a5f2366c9fb99ad6d https://www.encodeproject.org/files/ENCFF685VCG/@@download/ENCFF685VCG.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF206LES bigWig fold change over control ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF155RPN, ENCFF493MBH, ENCFF738EUE, ENCFF884QXU 299853645 ENCODE Processing Pipeline 79d80518823bc751faae4a91dacb154b https://www.encodeproject.org/files/ENCFF206LES/@@download/ENCFF206LES.bigWig mm10 released low read length insufficient read depth, control insufficient read depth ENCFF163MCS bigBed narrowPeak replicated peaks ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF865RFC 3629113 ENCODE Processing Pipeline 416c433b237d606caf86e5ae912c843d https://www.encodeproject.org/files/ENCFF163MCS/@@download/ENCFF163MCS.bigBed mm10 released low read length insufficient read depth, control insufficient read depth ENCFF001KAA bam alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KAM 388952014 Bing Ren, UCSD d820f717bd7a61a74823d64479c31d50 https://www.encodeproject.org/files/ENCFF001KAA/@@download/ENCFF001KAA.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KAB bam alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KAK 647565389 Bing Ren, UCSD a8e7687c448b4ab3eaa0d49900ae47ea https://www.encodeproject.org/files/ENCFF001KAB/@@download/ENCFF001KAB.bam mm9 released low read length, low read depth insufficient read depth ENCFF001KAC bigWig signal ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1, 2 ENCFF001KAA, ENCFF001KAB 77167714 Bing Ren, UCSD 35bbd19e2eb22265cd0baffcb705948c https://www.encodeproject.org/files/ENCFF001KAC/@@download/ENCFF001KAC.bigWig mm9 released low read length, low read depth insufficient read depth ENCFF001KAK fastq reads ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 1 36 single-ended 728976607 Bing Ren, UCSD 54da83f5090499d6da90aa532e0ec107 https://www.encodeproject.org/files/ENCFF001KAK/@@download/ENCFF001KAK.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF001KAM fastq reads ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 1 36 single-ended 657450613 Bing Ren, UCSD e9c90d96158c1cc72db1ac2f740843ec https://www.encodeproject.org/files/ENCFF001KAM/@@download/ENCFF001KAM.fastq.gz Illumina Genome Analyzer II released low read length, low read depth insufficient read depth ENCFF921QOH bam unfiltered alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 ENCFF001KAK, ENCFF806TVZ 847090907 J. Michael Cherry, Stanford 02d52d0c2428dd029bf84fb9d27c9ff8 https://www.encodeproject.org/files/ENCFF921QOH/@@download/ENCFF921QOH.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF933GCK bam unfiltered alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 ENCFF001KAM, ENCFF806TVZ 737542946 J. Michael Cherry, Stanford 530fdb6e125df8fee5aebc2d0b467be2 https://www.encodeproject.org/files/ENCFF933GCK/@@download/ENCFF933GCK.bam mm10-minimal archived low read length, low read depth insufficient read depth ENCFF111GKZ bam alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KAK, ENCFF018NEO 498183957 ENCODE Processing Pipeline a6d5d4c0d95c814a38c817bf7aa7f88c https://www.encodeproject.org/files/ENCFF111GKZ/@@download/ENCFF111GKZ.bam mm10 released low read length, low read depth insufficient read depth ENCFF389ARL bam alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KAM, ENCFF018NEO 382815863 ENCODE Processing Pipeline ebf30abd5b723201129c246180c8380c https://www.encodeproject.org/files/ENCFF389ARL/@@download/ENCFF389ARL.bam mm10 released low read length, low read depth insufficient read depth ENCFF431NND bam unfiltered alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KAK, ENCFF018NEO 848353470 ENCODE Processing Pipeline 815d2b08d7aab03cf6a14bd5d79cb7de https://www.encodeproject.org/files/ENCFF431NND/@@download/ENCFF431NND.bam mm10 released low read length, low read depth insufficient read depth ENCFF176QFI bam unfiltered alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KAM, ENCFF018NEO 737845140 ENCODE Processing Pipeline 0430db91a862ba0443ac2c29ac1b8a48 https://www.encodeproject.org/files/ENCFF176QFI/@@download/ENCFF176QFI.bam mm10 released low read length, low read depth insufficient read depth ENCFF001NSV bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NTA 412428037 Michael Snyder, Stanford be7ffc473943e92d4a20a228c6836d04 https://www.encodeproject.org/files/ENCFF001NSV/@@download/ENCFF001NSV.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NSW bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NSY 443580365 Michael Snyder, Stanford 95170dbe16cb49a9a7e5159d2e541b2d https://www.encodeproject.org/files/ENCFF001NSW/@@download/ENCFF001NSW.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NSX bigBed narrowPeak peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YJO 502980 Michael Snyder, Stanford 2f2b8e875fa90c6ea7f4c43aaaba3a59 https://www.encodeproject.org/files/ENCFF001NSX/@@download/ENCFF001NSX.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NSY fastq reads ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 951578211 Michael Snyder, Stanford 5129e371c769e215603a22dc5163c872 https://www.encodeproject.org/files/ENCFF001NSY/@@download/ENCFF001NSY.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NTA fastq reads ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 821495820 Michael Snyder, Stanford a502c40f85516a4323ca84efb45c511e https://www.encodeproject.org/files/ENCFF001NTA/@@download/ENCFF001NTA.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001NTC bigWig signal ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSV, ENCFF001NSW 137814096 Michael Snyder, Stanford c4152e5af18e2f8e82dd8d94b3d08cba https://www.encodeproject.org/files/ENCFF001NTC/@@download/ENCFF001NTC.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001YJO bed narrowPeak peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NSV, ENCFF001NSW 186311 Michael Snyder, Stanford 96bf10e84344b9d4a5ba62a5499befa7 https://www.encodeproject.org/files/ENCFF001YJO/@@download/ENCFF001YJO.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF658UAY bam unfiltered alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSY, ENCFF018NEO 979375089 ENCODE Processing Pipeline 26554a09e9a3a8e41b84fd499efc8fd9 https://www.encodeproject.org/files/ENCFF658UAY/@@download/ENCFF658UAY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF648UEX bam unfiltered alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NTA, ENCFF018NEO 843677946 ENCODE Processing Pipeline 3ee52332a9a11246f72da5a27b082765 https://www.encodeproject.org/files/ENCFF648UEX/@@download/ENCFF648UEX.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF722FAV bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSY, ENCFF018NEO 570868881 ENCODE Processing Pipeline a3ac9cedddc1e7126c088890f1303c84 https://www.encodeproject.org/files/ENCFF722FAV/@@download/ENCFF722FAV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF947LVT bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NTA, ENCFF018NEO 537885845 ENCODE Processing Pipeline 43e6c5d5e4eed3765cb73caa47e5d739 https://www.encodeproject.org/files/ENCFF947LVT/@@download/ENCFF947LVT.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF235QZV bigWig fold change over control ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF947LVT 244107479 ENCODE Processing Pipeline 169dd3988bb5fa39a40f89ce9c119154 https://www.encodeproject.org/files/ENCFF235QZV/@@download/ENCFF235QZV.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF793LKL bed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF722FAV, ENCFF947LVT 6059948 ENCODE Processing Pipeline 21c3314f398d772c4a2f6115559a946b https://www.encodeproject.org/files/ENCFF793LKL/@@download/ENCFF793LKL.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF073LCC bigBed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF323ECU 12748778 ENCODE Processing Pipeline 5dcefa49b96c11bc908d30b709f99238 https://www.encodeproject.org/files/ENCFF073LCC/@@download/ENCFF073LCC.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF625UEM bed narrowPeak optimal idr thresholded peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF323ECU, ENCFF547MET, ENCFF793LKL, ENCFF882JUL 451440 ENCODE Processing Pipeline f1a3a535f1a1fec18eeda82f3f3d64e5 https://www.encodeproject.org/files/ENCFF625UEM/@@download/ENCFF625UEM.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF823ZAI bigWig fold change over control ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF722FAV 253167590 ENCODE Processing Pipeline 9015d6605a88b01b4603c49c068912ee https://www.encodeproject.org/files/ENCFF823ZAI/@@download/ENCFF823ZAI.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF707FPY bigWig fold change over control ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF722FAV, ENCFF947LVT 424901566 ENCODE Processing Pipeline 346197b50434633b643fdf3152240fe3 https://www.encodeproject.org/files/ENCFF707FPY/@@download/ENCFF707FPY.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF882JUL bed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF947LVT 5476111 ENCODE Processing Pipeline 9255a68e2e543f5c40c6dcdf9285c187 https://www.encodeproject.org/files/ENCFF882JUL/@@download/ENCFF882JUL.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF752GIY bigBed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF793LKL 12955976 ENCODE Processing Pipeline 8b97ddecd571f0c16ca7bf1369a8fe2c https://www.encodeproject.org/files/ENCFF752GIY/@@download/ENCFF752GIY.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF658HKK bigWig signal p-value ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF722FAV, ENCFF947LVT 339691455 ENCODE Processing Pipeline dc0b64d3680bc732e227efaac4865606 https://www.encodeproject.org/files/ENCFF658HKK/@@download/ENCFF658HKK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF710HJW bigBed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF882JUL 12709200 ENCODE Processing Pipeline ee377cd9dc1c749b5b4c6a9984c485a4 https://www.encodeproject.org/files/ENCFF710HJW/@@download/ENCFF710HJW.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF049DRT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF625UEM 1064776 ENCODE Processing Pipeline 8a4c150cfa060542d2dcdd4ef3d2ff7b https://www.encodeproject.org/files/ENCFF049DRT/@@download/ENCFF049DRT.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF493HEV bigWig signal p-value ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF722FAV 269626593 ENCODE Processing Pipeline 1a284eac96ab486527a962cc27fc4647 https://www.encodeproject.org/files/ENCFF493HEV/@@download/ENCFF493HEV.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF782GNE bigWig signal p-value ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF947LVT 227242658 ENCODE Processing Pipeline 3375cb801eb58a391a718dcd0056d8b7 https://www.encodeproject.org/files/ENCFF782GNE/@@download/ENCFF782GNE.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF323ECU bed narrowPeak peaks and background as input for IDR ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF722FAV 5292389 ENCODE Processing Pipeline 648c23af489c9cc61a319a6b64c989ce https://www.encodeproject.org/files/ENCFF323ECU/@@download/ENCFF323ECU.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001LGM bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LGV 1023167542 Bing Ren, UCSD d51ce14d9677cc677dc6f3404fb1bb86 https://www.encodeproject.org/files/ENCFF001LGM/@@download/ENCFF001LGM.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001LGN bigBed broadPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE ENCFF001XZW 406381 Bing Ren, UCSD 6b0a739ead4ca6e53b8e217e9ec944d7 https://www.encodeproject.org/files/ENCFF001LGN/@@download/ENCFF001LGN.bigBed mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001LGO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LGW 1266030345 Bing Ren, UCSD d8d8d2c9a00c50eebf557a49290d4067 https://www.encodeproject.org/files/ENCFF001LGO/@@download/ENCFF001LGO.bam mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001LGP bigWig signal ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 54643169 Bing Ren, UCSD aa10b7d2c1b4723d28edcd5b9dc02230 https://www.encodeproject.org/files/ENCFF001LGP/@@download/ENCFF001LGP.bigWig mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth missing derived_from ENCFF001LGV fastq reads ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 1013826871 Bing Ren, UCSD bcd517a44116067870cd1a8db2fb3970 https://www.encodeproject.org/files/ENCFF001LGV/@@download/ENCFF001LGV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZL/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, low read depth ENCFF001LGW fastq reads ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1252220304 Bing Ren, UCSD 12469c44c8aef2fbd876da70ba51a920 https://www.encodeproject.org/files/ENCFF001LGW/@@download/ENCFF001LGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001JZE/ released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001XZW bed broadPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 296521 Bing Ren, UCSD a6701521e61b87e519e1d8cb2879d890 https://www.encodeproject.org/files/ENCFF001XZW/@@download/ENCFF001XZW.bed.gz mm9 archived low read length, moderate library complexity, mild to moderate bottlenecking, low read depth missing derived_from ENCFF781WHH bam unfiltered alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 1104255517 ENCODE Processing Pipeline f1a82886c2ddf3b8f96041b8cb4d4269 https://www.encodeproject.org/files/ENCFF781WHH/@@download/ENCFF781WHH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF904VPD bam unfiltered alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 1365078868 ENCODE Processing Pipeline 2f436354e9a6cd4b0fcbd08b71c6c24e https://www.encodeproject.org/files/ENCFF904VPD/@@download/ENCFF904VPD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF337AUO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 608960718 ENCODE Processing Pipeline 572c3324b3d5a68fdd22a2ac432539a2 https://www.encodeproject.org/files/ENCFF337AUO/@@download/ENCFF337AUO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF321PYA bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 780037647 ENCODE Processing Pipeline b21167a2bd0b966d80efefefbdcc0435 https://www.encodeproject.org/files/ENCFF321PYA/@@download/ENCFF321PYA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF239VRO bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 315567943 ENCODE Processing Pipeline e898383318ef5cca5848ab7ccef490cc https://www.encodeproject.org/files/ENCFF239VRO/@@download/ENCFF239VRO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF415USY bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 410805300 ENCODE Processing Pipeline 8f48995ac4cdc55c76ea8354267d5c38 https://www.encodeproject.org/files/ENCFF415USY/@@download/ENCFF415USY.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF991NSC bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 370449873 ENCODE Processing Pipeline 3c1495a66767e0003793efb4ba3034dc https://www.encodeproject.org/files/ENCFF991NSC/@@download/ENCFF991NSC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF826OQW bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 533510023 ENCODE Processing Pipeline 3f4060d45255de89e3d2d66ad6786766 https://www.encodeproject.org/files/ENCFF826OQW/@@download/ENCFF826OQW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF891XCC bigBed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF738VPY 12884930 ENCODE Processing Pipeline 2b9228e7c2229628781d870d2d88778c https://www.encodeproject.org/files/ENCFF891XCC/@@download/ENCFF891XCC.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF671ONB bigBed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF755GYG 12953935 ENCODE Processing Pipeline a2890513b371a543d16c591fa2548bac https://www.encodeproject.org/files/ENCFF671ONB/@@download/ENCFF671ONB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF978OGN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF524HSW 573443 ENCODE Processing Pipeline 18bcc4ae81445632510812656fb02c5d https://www.encodeproject.org/files/ENCFF978OGN/@@download/ENCFF978OGN.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF360AUF bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 303408409 ENCODE Processing Pipeline 51d083b1faa7de8a397e63c4f86899ba https://www.encodeproject.org/files/ENCFF360AUF/@@download/ENCFF360AUF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF738VPY bed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 5460339 ENCODE Processing Pipeline 618427c867fe7ba134b2523dbf0bb70d https://www.encodeproject.org/files/ENCFF738VPY/@@download/ENCFF738VPY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF330SNH bed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 5914290 ENCODE Processing Pipeline 5f3179662d4458b2f588dff5642afaf6 https://www.encodeproject.org/files/ENCFF330SNH/@@download/ENCFF330SNH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF755GYG bed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 6641531 ENCODE Processing Pipeline 6501dc71e28009867c5ed0feeb8b4145 https://www.encodeproject.org/files/ENCFF755GYG/@@download/ENCFF755GYG.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF524HSW bed narrowPeak conservative idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF330SNH, ENCFF547MET, ENCFF738VPY, ENCFF755GYG 323808 ENCODE Processing Pipeline 1e9481f2b2d05054d9afdc5fc5ff9d8f https://www.encodeproject.org/files/ENCFF524HSW/@@download/ENCFF524HSW.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF253NHY bed narrowPeak optimal idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF330SNH, ENCFF547MET, ENCFF738VPY, ENCFF755GYG 343598 ENCODE Processing Pipeline d60a0cbb723d353c09886c8e13308594 https://www.encodeproject.org/files/ENCFF253NHY/@@download/ENCFF253NHY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF836NHA bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 517418211 ENCODE Processing Pipeline 712085e87bdb23727e48c9d4101256f3 https://www.encodeproject.org/files/ENCFF836NHA/@@download/ENCFF836NHA.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF078SFE bigBed narrowPeak peaks and background as input for IDR ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 ENCFF330SNH 12925356 ENCODE Processing Pipeline 96773668eefffb1c4483bc6fca3e692c https://www.encodeproject.org/files/ENCFF078SFE/@@download/ENCFF078SFE.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF080WDI bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF253NHY 599106 ENCODE Processing Pipeline 748a6c5ca01003ee1f96dad5b622f247 https://www.encodeproject.org/files/ENCFF080WDI/@@download/ENCFF080WDI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF163NKO bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF433FQJ 358245111 Michael Snyder, Stanford 9006a88f5d9c6a3f29f6b68ccd3ffdd5 https://www.encodeproject.org/files/ENCFF163NKO/@@download/ENCFF163NKO.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF423RCQ fastq reads ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 893122499 Michael Snyder, Stanford 607c533c9a166ddeecd058c2d19ab404 https://www.encodeproject.org/files/ENCFF423RCQ/@@download/ENCFF423RCQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF052OAN bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF423RCQ 737114809 Michael Snyder, Stanford 8dec7af9ef2ceb5b81ad7b02cbcc8c5a https://www.encodeproject.org/files/ENCFF052OAN/@@download/ENCFF052OAN.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF139PSX bed narrowPeak peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF052OAN, ENCFF163NKO 33429 Michael Snyder, Stanford 37a6373db96489532393e3b237473b44 https://www.encodeproject.org/files/ENCFF139PSX/@@download/ENCFF139PSX.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF433FQJ fastq reads ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 633473223 Michael Snyder, Stanford 3e49a5a2075545570f3a0c0d3c3c3e3a https://www.encodeproject.org/files/ENCFF433FQJ/@@download/ENCFF433FQJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF448YKU bigBed narrowPeak peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF139PSX 133202 ENCODE Consortium 2aa5d977cf0b8a35ed5d5ee1bc2393c7 https://www.encodeproject.org/files/ENCFF448YKU/@@download/ENCFF448YKU.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF585RTO bam unfiltered alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF423RCQ 1219756143 ENCODE Processing Pipeline ed72bd018f3f5b29dfa06a8f631ba894 https://www.encodeproject.org/files/ENCFF585RTO/@@download/ENCFF585RTO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF233MDY bam unfiltered alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF433FQJ 714278522 ENCODE Processing Pipeline 61fbdf1e7ec72a08b6469be553789c9b https://www.encodeproject.org/files/ENCFF233MDY/@@download/ENCFF233MDY.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF513TUI bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF433FQJ 125440369 ENCODE Processing Pipeline 570bcde637e1e9765a4b535fd7827647 https://www.encodeproject.org/files/ENCFF513TUI/@@download/ENCFF513TUI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF862RHC bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF423RCQ 663501920 ENCODE Processing Pipeline 2ec3cc49f5fc40b3d5d464664fa17b2d https://www.encodeproject.org/files/ENCFF862RHC/@@download/ENCFF862RHC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF466MCQ bigBed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF571RCH 10393125 ENCODE Processing Pipeline e2b43bd61572d6c315001910e8da45ba https://www.encodeproject.org/files/ENCFF466MCQ/@@download/ENCFF466MCQ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF729LTE bigWig fold change over control ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF513TUI 80257950 ENCODE Processing Pipeline eccc3971ea95a8515efc692aa7eeafbc https://www.encodeproject.org/files/ENCFF729LTE/@@download/ENCFF729LTE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF209BHJ bigBed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF613LTH 10633448 ENCODE Processing Pipeline a0dfb5149c1427c453fabba15519dfed https://www.encodeproject.org/files/ENCFF209BHJ/@@download/ENCFF209BHJ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF430XPX bigWig signal p-value ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF513TUI 181030990 ENCODE Processing Pipeline df92892aea15a7d2ac7958f99e5f71a0 https://www.encodeproject.org/files/ENCFF430XPX/@@download/ENCFF430XPX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF899IYM bigWig signal p-value ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF862RHC 310004175 ENCODE Processing Pipeline 8fcf2ef5814ef6b7cbea911a9077f6b4 https://www.encodeproject.org/files/ENCFF899IYM/@@download/ENCFF899IYM.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF532QBH bigWig signal p-value ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF513TUI, ENCFF862RHC 305265773 ENCODE Processing Pipeline b180b053f9bcfa4c83a67214a0498ecf https://www.encodeproject.org/files/ENCFF532QBH/@@download/ENCFF532QBH.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF078OIH bigBed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF425HUT 3348957 ENCODE Processing Pipeline e5a2e223f48efb927ec83fc7ba540e23 https://www.encodeproject.org/files/ENCFF078OIH/@@download/ENCFF078OIH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF746XBQ bed narrowPeak conservative idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF425HUT, ENCFF547MET, ENCFF571RCH, ENCFF613LTH 36825 ENCODE Processing Pipeline 081c7c2c0cc22d017b7bd18f6e3e136c https://www.encodeproject.org/files/ENCFF746XBQ/@@download/ENCFF746XBQ.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF425HUT bed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF513TUI 1550064 ENCODE Processing Pipeline 719cd70c858fa8b0552f8d06538b00bc https://www.encodeproject.org/files/ENCFF425HUT/@@download/ENCFF425HUT.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF613LTH bed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF862RHC 4711359 ENCODE Processing Pipeline 3b9bec5c819c1b1c04c9c94dc5ab3fb2 https://www.encodeproject.org/files/ENCFF613LTH/@@download/ENCFF613LTH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF571RCH bed narrowPeak peaks and background as input for IDR ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF513TUI, ENCFF862RHC 4650038 ENCODE Processing Pipeline 6a32ae4d66a28e6d0631946c3afb79cb https://www.encodeproject.org/files/ENCFF571RCH/@@download/ENCFF571RCH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF467YLD bigBed narrowPeak conservative idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF746XBQ 117507 ENCODE Processing Pipeline 37099bfc4627f2eadce7815516a55796 https://www.encodeproject.org/files/ENCFF467YLD/@@download/ENCFF467YLD.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF044OUI bed narrowPeak optimal idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF425HUT, ENCFF547MET, ENCFF571RCH, ENCFF613LTH 94709 ENCODE Processing Pipeline 33636b3a6a1e97a8984d21e425ab3f53 https://www.encodeproject.org/files/ENCFF044OUI/@@download/ENCFF044OUI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF537AGP bigBed narrowPeak optimal idr thresholded peaks ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044OUI 237239 ENCODE Processing Pipeline 82bcbac294e5df17bd069e8f065da66b https://www.encodeproject.org/files/ENCFF537AGP/@@download/ENCFF537AGP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF735MDS bigWig fold change over control ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF862RHC 282541547 ENCODE Processing Pipeline 066151e474468b489131e39a2b4926b6 https://www.encodeproject.org/files/ENCFF735MDS/@@download/ENCFF735MDS.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF822SQK bigWig fold change over control ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF513TUI, ENCFF862RHC 315452042 ENCODE Processing Pipeline c43c054d79fb673aa47263801172b5b1 https://www.encodeproject.org/files/ENCFF822SQK/@@download/ENCFF822SQK.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF205UPE fastq reads ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 652701041 Michael Snyder, Stanford cf7d157dcf2af337659f344f720e902a https://www.encodeproject.org/files/ENCFF205UPE/@@download/ENCFF205UPE.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF845NFO fastq reads ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 838164483 Michael Snyder, Stanford 8ca8d42db252c9c2ee8c49b402a0bd59 https://www.encodeproject.org/files/ENCFF845NFO/@@download/ENCFF845NFO.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF846TAQ bed narrowPeak peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF440BSC, ENCFF931LLJ 170634 Michael Snyder, Stanford e99cdf49d17bddee8401c920a73f96df https://www.encodeproject.org/files/ENCFF846TAQ/@@download/ENCFF846TAQ.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF440BSC bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF845NFO 551728866 Michael Snyder, Stanford 4187371152083522ce4e4a9106919d42 https://www.encodeproject.org/files/ENCFF440BSC/@@download/ENCFF440BSC.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF931LLJ bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF205UPE 567728956 Michael Snyder, Stanford 5f9a6d35eeb6720b60d99efbfa85c143 https://www.encodeproject.org/files/ENCFF931LLJ/@@download/ENCFF931LLJ.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF364LWZ bigBed narrowPeak peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF846TAQ 362563 ENCODE Consortium ddc1fcd763c916741f4cd4665534413d https://www.encodeproject.org/files/ENCFF364LWZ/@@download/ENCFF364LWZ.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF108LUA bam unfiltered alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF845NFO 939189261 ENCODE Processing Pipeline 23f73c3aac10064dcf3f8a8fec1bce3a https://www.encodeproject.org/files/ENCFF108LUA/@@download/ENCFF108LUA.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF350DDR bam unfiltered alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF205UPE 813859442 ENCODE Processing Pipeline 4539f50b035368d8ccf6930af65d934a https://www.encodeproject.org/files/ENCFF350DDR/@@download/ENCFF350DDR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF679SCA bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF845NFO 220445203 ENCODE Processing Pipeline 7f87615c9ed9f10d6d2fa538bc5cdd32 https://www.encodeproject.org/files/ENCFF679SCA/@@download/ENCFF679SCA.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF373DGP bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF205UPE 432421217 ENCODE Processing Pipeline cf10987ec35daca88fe620d4add0d42a https://www.encodeproject.org/files/ENCFF373DGP/@@download/ENCFF373DGP.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF048IQJ bigWig signal p-value ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF373DGP 247758690 ENCODE Processing Pipeline 5f6760f845e9cebbeb31e5cbf3ef1ad7 https://www.encodeproject.org/files/ENCFF048IQJ/@@download/ENCFF048IQJ.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF205MJL bigWig fold change over control ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF679SCA 112495098 ENCODE Processing Pipeline b2b957de772eee1079e87c06a6369c54 https://www.encodeproject.org/files/ENCFF205MJL/@@download/ENCFF205MJL.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF329MBZ bigWig signal p-value ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF679SCA 222928453 ENCODE Processing Pipeline a7678a9b5ce6cf2673a553600608c3d9 https://www.encodeproject.org/files/ENCFF329MBZ/@@download/ENCFF329MBZ.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF842QSG bigWig signal p-value ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF373DGP, ENCFF679SCA 280988693 ENCODE Processing Pipeline 2898365d4a5255479b6bf0fc2483d2c6 https://www.encodeproject.org/files/ENCFF842QSG/@@download/ENCFF842QSG.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF976FMK bigWig fold change over control ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF373DGP 200654738 ENCODE Processing Pipeline 2c1fb517199b1f1470f87a3d7ece87d4 https://www.encodeproject.org/files/ENCFF976FMK/@@download/ENCFF976FMK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF774CYI bigBed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF958NPV 10566040 ENCODE Processing Pipeline 1e63efe562e2c7e21910cffa64632f81 https://www.encodeproject.org/files/ENCFF774CYI/@@download/ENCFF774CYI.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF623PQH bigWig fold change over control ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF373DGP, ENCFF679SCA 275365478 ENCODE Processing Pipeline 8bed9fc23a9d884d71d0fe068985eaa6 https://www.encodeproject.org/files/ENCFF623PQH/@@download/ENCFF623PQH.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF314KST bigBed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF150DQT 10111872 ENCODE Processing Pipeline 5b0f4dd0fbb8e95de6af1424712d41f8 https://www.encodeproject.org/files/ENCFF314KST/@@download/ENCFF314KST.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF327ALQ bed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF679SCA 2389669 ENCODE Processing Pipeline dfe4035777357f9f894d974ef040367d https://www.encodeproject.org/files/ENCFF327ALQ/@@download/ENCFF327ALQ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF150DQT bed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF373DGP 4385430 ENCODE Processing Pipeline 736c61d48336e126814fb16306fe87f7 https://www.encodeproject.org/files/ENCFF150DQT/@@download/ENCFF150DQT.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF319SNB bigBed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF327ALQ 4751587 ENCODE Processing Pipeline 93f976997cfb86b85bd76f4d57907cbc https://www.encodeproject.org/files/ENCFF319SNB/@@download/ENCFF319SNB.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF524ZYV bed narrowPeak conservative idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF150DQT, ENCFF327ALQ, ENCFF547MET, ENCFF958NPV 185887 ENCODE Processing Pipeline 43236f9410529d2cb5b354054fd9ed1b https://www.encodeproject.org/files/ENCFF524ZYV/@@download/ENCFF524ZYV.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF958NPV bed narrowPeak peaks and background as input for IDR ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF373DGP, ENCFF679SCA 4761818 ENCODE Processing Pipeline d1494a7080857194aecb9aab660ace3e https://www.encodeproject.org/files/ENCFF958NPV/@@download/ENCFF958NPV.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF443MGH bed narrowPeak optimal idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF150DQT, ENCFF327ALQ, ENCFF547MET, ENCFF958NPV 200903 ENCODE Processing Pipeline 45883363b308683581b848b51f76a685 https://www.encodeproject.org/files/ENCFF443MGH/@@download/ENCFF443MGH.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF470IRY bigBed narrowPeak conservative idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF524ZYV 398973 ENCODE Processing Pipeline 8ed88bab44961846a8674da9a85b12e0 https://www.encodeproject.org/files/ENCFF470IRY/@@download/ENCFF470IRY.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF021XRM bigBed narrowPeak optimal idr thresholded peaks ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF443MGH 419430 ENCODE Processing Pipeline a8c02768f5d5852a306c802fad77e9ae https://www.encodeproject.org/files/ENCFF021XRM/@@download/ENCFF021XRM.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF957RNI bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF186NAS 641319106 Michael Snyder, Stanford 81af377c6a23feefdb6376bb06b3db33 https://www.encodeproject.org/files/ENCFF957RNI/@@download/ENCFF957RNI.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF538BMI bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF592ERV 790905836 Michael Snyder, Stanford 86654c2aeb670804dea1c0c1e74733e1 https://www.encodeproject.org/files/ENCFF538BMI/@@download/ENCFF538BMI.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF445ZZT bed narrowPeak peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF538BMI, ENCFF957RNI 349168 Michael Snyder, Stanford 006f46000113d1435dfceaee083c5243 https://www.encodeproject.org/files/ENCFF445ZZT/@@download/ENCFF445ZZT.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF592ERV fastq reads ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 845099169 Michael Snyder, Stanford 85320f303673650d550ad436f868b88d https://www.encodeproject.org/files/ENCFF592ERV/@@download/ENCFF592ERV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF186NAS fastq reads ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 746822664 Michael Snyder, Stanford 076cf403ab2c9574bcd6840a69e8629f https://www.encodeproject.org/files/ENCFF186NAS/@@download/ENCFF186NAS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF292UDW bigBed narrowPeak peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF445ZZT 850102 ENCODE Consortium d695dd06c31b4d57cf9c0b18cb4277d4 https://www.encodeproject.org/files/ENCFF292UDW/@@download/ENCFF292UDW.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF377UYE bam unfiltered alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF186NAS 941051519 ENCODE Processing Pipeline e54646160216e072b2e8d6a0e5eff704 https://www.encodeproject.org/files/ENCFF377UYE/@@download/ENCFF377UYE.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF583HQR bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF186NAS 418344237 ENCODE Processing Pipeline beba160cb06b5c5f6d0466fcdc468f0f https://www.encodeproject.org/files/ENCFF583HQR/@@download/ENCFF583HQR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF223IAO bam unfiltered alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF592ERV 1104711083 ENCODE Processing Pipeline afeac3b87116f58b72968f66c1647395 https://www.encodeproject.org/files/ENCFF223IAO/@@download/ENCFF223IAO.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF624QGV bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF592ERV 616161638 ENCODE Processing Pipeline b517bd64b4dff5ff23d0ffe40c31b852 https://www.encodeproject.org/files/ENCFF624QGV/@@download/ENCFF624QGV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF630ECS bigWig signal p-value ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF583HQR 249361377 ENCODE Processing Pipeline 26a09df2bbd562e8b1e7920df147e16c https://www.encodeproject.org/files/ENCFF630ECS/@@download/ENCFF630ECS.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF439SGB bigWig fold change over control ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF624QGV 284743930 ENCODE Processing Pipeline 0cb8473477ef197242b4e4a3f7a283a9 https://www.encodeproject.org/files/ENCFF439SGB/@@download/ENCFF439SGB.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF554GYK bigWig signal p-value ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF624QGV 318511093 ENCODE Processing Pipeline 94f113c47675258e51c530badd10a4df https://www.encodeproject.org/files/ENCFF554GYK/@@download/ENCFF554GYK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF746CPX bed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF583HQR 4653725 ENCODE Processing Pipeline 5c945668208ce918e59557a8b0a49669 https://www.encodeproject.org/files/ENCFF746CPX/@@download/ENCFF746CPX.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF493WJO bigBed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF130MWN 13082891 ENCODE Processing Pipeline b3517c43c81672316a7e0e788a36cf8a https://www.encodeproject.org/files/ENCFF493WJO/@@download/ENCFF493WJO.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF898FTB bigBed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF746CPX 10249814 ENCODE Processing Pipeline ca085af0ad2cdb1d9d00d35a12c5d702 https://www.encodeproject.org/files/ENCFF898FTB/@@download/ENCFF898FTB.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF693DXQ bigBed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF838NPZ 10617153 ENCODE Processing Pipeline 7936d43a8c39e4c86e404a0424876edd https://www.encodeproject.org/files/ENCFF693DXQ/@@download/ENCFF693DXQ.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF373NYF bigWig signal p-value ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF583HQR, ENCFF624QGV 296540988 ENCODE Processing Pipeline 0a2514866a44eb59764ced46189f5086 https://www.encodeproject.org/files/ENCFF373NYF/@@download/ENCFF373NYF.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF128UGJ bigWig fold change over control ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 ENCFF171OVT, ENCFF583HQR 202743490 ENCODE Processing Pipeline ac427af20df020c4fd3249accdc86e91 https://www.encodeproject.org/files/ENCFF128UGJ/@@download/ENCFF128UGJ.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF507ODK bigWig fold change over control ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF583HQR, ENCFF624QGV 397546894 ENCODE Processing Pipeline 9b144242df592b55485d932e4365106e https://www.encodeproject.org/files/ENCFF507ODK/@@download/ENCFF507ODK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF838NPZ bed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 ENCFF171OVT, ENCFF624QGV 4838801 ENCODE Processing Pipeline 56a94ddb69ef8073da16dba776ee17b8 https://www.encodeproject.org/files/ENCFF838NPZ/@@download/ENCFF838NPZ.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF348YFB bed narrowPeak conservative idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF130MWN, ENCFF547MET, ENCFF746CPX, ENCFF838NPZ 325848 ENCODE Processing Pipeline 53f29392b0f2a78202ac87bc7ee7d422 https://www.encodeproject.org/files/ENCFF348YFB/@@download/ENCFF348YFB.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF017MEB bigBed narrowPeak conservative idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF348YFB 699176 ENCODE Processing Pipeline 9077ded78e2cd88b72fca954d72460cc https://www.encodeproject.org/files/ENCFF017MEB/@@download/ENCFF017MEB.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF130MWN bed narrowPeak peaks and background as input for IDR ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF171OVT, ENCFF583HQR, ENCFF624QGV 5459438 ENCODE Processing Pipeline 5b7f4032bcbbf5f2d9c8ace14d540133 https://www.encodeproject.org/files/ENCFF130MWN/@@download/ENCFF130MWN.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF350RQA bigBed narrowPeak optimal idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF885EHG 756754 ENCODE Processing Pipeline 2453561166742b5af7e1c67a0de32741 https://www.encodeproject.org/files/ENCFF350RQA/@@download/ENCFF350RQA.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF885EHG bed narrowPeak optimal idr thresholded peaks ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF130MWN, ENCFF547MET, ENCFF746CPX, ENCFF838NPZ 363539 ENCODE Processing Pipeline 92906234a7c7b9e6aebbd9246ec1b6bd https://www.encodeproject.org/files/ENCFF885EHG/@@download/ENCFF885EHG.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF787LKE fastq reads ENCSR655SYB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 1 50 single-ended 909204199 Richard Myers, HAIB e189412cc3aa0a8cd82aab555b3e4e39 SRA:SRR5111912 https://www.encodeproject.org/files/ENCFF787LKE/@@download/ENCFF787LKE.fastq.gz Illumina HiSeq 2000 released low read depth ENCFF193EXM bam unfiltered alignments ENCSR655SYB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 ENCFF018NEO, ENCFF787LKE 1049517940 ENCODE Processing Pipeline f2d5560b7f897f2127950af444ddc50e https://www.encodeproject.org/files/ENCFF193EXM/@@download/ENCFF193EXM.bam mm10 released low read depth ENCFF493AJV bam alignments ENCSR655SYB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 50 ENCFF018NEO, ENCFF787LKE 812764449 ENCODE Processing Pipeline 113f2377dc92e9d2d3e147eddcf02e9f https://www.encodeproject.org/files/ENCFF493AJV/@@download/ENCFF493AJV.bam mm10 released low read depth ENCFF637HTW fastq reads ENCSR109LQX ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 1 50 single-ended 1239443130 Richard Myers, HAIB cb6bb8df5c9491a36706904a8aa30b76 SRA:SRR5111114 https://www.encodeproject.org/files/ENCFF637HTW/@@download/ENCFF637HTW.fastq.gz Illumina HiSeq 2000 released low read depth ENCFF931PQC bam unfiltered alignments ENCSR109LQX ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 ENCFF018NEO, ENCFF637HTW 1363267480 ENCODE Processing Pipeline a311f04621fc19c6e4f1e74ee17cac15 https://www.encodeproject.org/files/ENCFF931PQC/@@download/ENCFF931PQC.bam mm10 released low read depth ENCFF531KSN bam alignments ENCSR109LQX ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 50 ENCFF018NEO, ENCFF637HTW 1059085486 ENCODE Processing Pipeline 0b1731db35d90a211c806baf39ceeded https://www.encodeproject.org/files/ENCFF531KSN/@@download/ENCFF531KSN.bam mm10 released low read depth ENCFF002AGL fastq reads ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 903020454 Bing Ren, UCSD 01f2b4e4c014e197714942e0327c5a29 SRA:SRR3653273 https://www.encodeproject.org/files/ENCFF002AGL/@@download/ENCFF002AGL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002AGN fastq reads ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1114448093 Bing Ren, UCSD ac1de095acfc6916a150fbc004e72c47 SRA:SRR3653272 https://www.encodeproject.org/files/ENCFF002AGN/@@download/ENCFF002AGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQM/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF020NRP bam alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AGN, ENCFF806TVZ 871345368 ENCODE Processing Pipeline 38e844f8dc1932186cd0ad5cfd7ad9b1 https://www.encodeproject.org/files/ENCFF020NRP/@@download/ENCFF020NRP.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF948PVH fastq reads ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 597735225 Bing Ren, UCSD f3eef6d5f75337bce93d269a5e6db6e6 SRA:SRR3653274 https://www.encodeproject.org/files/ENCFF948PVH/@@download/ENCFF948PVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQK/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF072WDH bam alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGL, ENCFF806TVZ, ENCFF948PVH 1253428270 ENCODE Processing Pipeline b0838dadd76196236b88e8195c111b89 https://www.encodeproject.org/files/ENCFF072WDH/@@download/ENCFF072WDH.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF729QYL bigBed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF569GQQ 2348753 ENCODE Processing Pipeline 8392d764fe40444168a701040f273cdb https://www.encodeproject.org/files/ENCFF729QYL/@@download/ENCFF729QYL.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF372VOI bigWig signal p-value ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF072WDH, ENCFF790TLG, ENCFF988JQL 561224512 ENCODE Processing Pipeline 18986d5df573257967717b2b42a4372d https://www.encodeproject.org/files/ENCFF372VOI/@@download/ENCFF372VOI.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF569GQQ bed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF072WDH, ENCFF790TLG, ENCFF988JQL 1087103 ENCODE Processing Pipeline 23aaab6767059112f3b22a8fd0677736 https://www.encodeproject.org/files/ENCFF569GQQ/@@download/ENCFF569GQQ.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF164WBS bigBed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265ZEL 1972826 ENCODE Processing Pipeline 107e2aa456b34350faa9ca6c35e60f63 https://www.encodeproject.org/files/ENCFF164WBS/@@download/ENCFF164WBS.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF124QSN bed narrowPeak replicated peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF265ZEL, ENCFF357EQQ, ENCFF569GQQ 413422 ENCODE Processing Pipeline 9cb7f76934a8ce2ec14e686eee08a7b4 https://www.encodeproject.org/files/ENCFF124QSN/@@download/ENCFF124QSN.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF904IUY bigBed narrowPeak replicated peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF124QSN 1012269 ENCODE Processing Pipeline 6bb421b44190ad35d65f24448c7bed0d https://www.encodeproject.org/files/ENCFF904IUY/@@download/ENCFF904IUY.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF400OCS bigWig signal p-value ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF020NRP, ENCFF072WDH, ENCFF790TLG, ENCFF988JQL 812865765 ENCODE Processing Pipeline 9b419d512d6fe7c3700ec8c3659bbc0a https://www.encodeproject.org/files/ENCFF400OCS/@@download/ENCFF400OCS.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF357EQQ bed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF020NRP, ENCFF790TLG 680214 ENCODE Processing Pipeline 92e15d8bedbcdddfd24510b10001fca6 https://www.encodeproject.org/files/ENCFF357EQQ/@@download/ENCFF357EQQ.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF265ZEL bed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF020NRP, ENCFF072WDH, ENCFF790TLG, ENCFF988JQL 929544 ENCODE Processing Pipeline 5c4b1cba2d800fe5eb204dc28a597d9e https://www.encodeproject.org/files/ENCFF265ZEL/@@download/ENCFF265ZEL.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF381NZE bigWig fold change over control ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF072WDH, ENCFF790TLG, ENCFF988JQL 578074139 ENCODE Processing Pipeline b46c6c9fe348dff07e09ee5e6de0f6d2 https://www.encodeproject.org/files/ENCFF381NZE/@@download/ENCFF381NZE.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF350NWQ bigWig fold change over control ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF020NRP, ENCFF072WDH, ENCFF790TLG, ENCFF988JQL 828817633 ENCODE Processing Pipeline f2ef407ee83a3d95e9a78aa339b2227b https://www.encodeproject.org/files/ENCFF350NWQ/@@download/ENCFF350NWQ.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF071ZBA bam unfiltered alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGN, ENCFF018NEO 1233363513 ENCODE Processing Pipeline ee2caab68a927b75f9e467fa3f643f29 https://www.encodeproject.org/files/ENCFF071ZBA/@@download/ENCFF071ZBA.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF791QRW bam unfiltered alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGL, ENCFF018NEO, ENCFF948PVH 1599488331 ENCODE Processing Pipeline 758793efa2eacbe25ae71c006b7cade8 https://www.encodeproject.org/files/ENCFF791QRW/@@download/ENCFF791QRW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF606NRV bam alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGN, ENCFF018NEO 871131016 ENCODE Processing Pipeline 08a5562804846a6ffac3667ebaa13dcf https://www.encodeproject.org/files/ENCFF606NRV/@@download/ENCFF606NRV.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF337BBR bam alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGL, ENCFF018NEO, ENCFF948PVH 1102285473 ENCODE Processing Pipeline 724a5d08d9dee356bb2033a2a7281142 https://www.encodeproject.org/files/ENCFF337BBR/@@download/ENCFF337BBR.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF421SWL bed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF337BBR, ENCFF568CQH, ENCFF621MOH 1043087 ENCODE Processing Pipeline f4a3ff77f60aa36f799328473e89c18a https://www.encodeproject.org/files/ENCFF421SWL/@@download/ENCFF421SWL.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF160FZX bigBed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF421SWL 2258367 ENCODE Processing Pipeline 0cfb45bfac66307e07354af1d2c2113e https://www.encodeproject.org/files/ENCFF160FZX/@@download/ENCFF160FZX.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF843YWU bigBed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF025ULA 1598389 ENCODE Processing Pipeline 669821175576d568d7a640a9abeed500 https://www.encodeproject.org/files/ENCFF843YWU/@@download/ENCFF843YWU.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF025ULA bed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF606NRV, ENCFF621MOH 680216 ENCODE Processing Pipeline 48e2fc1d4801089392587718874ea1a0 https://www.encodeproject.org/files/ENCFF025ULA/@@download/ENCFF025ULA.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF160QSW bed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF337BBR, ENCFF568CQH, ENCFF606NRV, ENCFF621MOH 923189 ENCODE Processing Pipeline 011ea8ae87a151e61e3f5756795cbb15 https://www.encodeproject.org/files/ENCFF160QSW/@@download/ENCFF160QSW.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF402EMQ bigBed narrowPeak peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF160QSW 1951527 ENCODE Processing Pipeline d06c81eb236e18de62110661b6d54d56 https://www.encodeproject.org/files/ENCFF402EMQ/@@download/ENCFF402EMQ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133UNW bigWig signal p-value ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF337BBR, ENCFF568CQH, ENCFF621MOH 536223352 ENCODE Processing Pipeline 270e909355dc88bcab78c9695e885754 https://www.encodeproject.org/files/ENCFF133UNW/@@download/ENCFF133UNW.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF515SGB bigWig signal p-value ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF337BBR, ENCFF568CQH, ENCFF606NRV, ENCFF621MOH 810918822 ENCODE Processing Pipeline b569a0cae686615865b5551a15f2c869 https://www.encodeproject.org/files/ENCFF515SGB/@@download/ENCFF515SGB.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF325RMN bigWig signal p-value ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF606NRV, ENCFF621MOH 302665329 ENCODE Processing Pipeline 8c94ae1baec1bb51f85ef772e29cc291 https://www.encodeproject.org/files/ENCFF325RMN/@@download/ENCFF325RMN.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF863YMD bigWig fold change over control ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF337BBR, ENCFF568CQH, ENCFF621MOH 573925561 ENCODE Processing Pipeline 857a450c2799b73c60de3a62fe5f4e69 https://www.encodeproject.org/files/ENCFF863YMD/@@download/ENCFF863YMD.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF746KCP bigWig fold change over control ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF606NRV, ENCFF621MOH 376170800 ENCODE Processing Pipeline 3ce6905db5b75c244b44172d2cf9c158 https://www.encodeproject.org/files/ENCFF746KCP/@@download/ENCFF746KCP.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF908XOQ bigWig fold change over control ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF337BBR, ENCFF568CQH, ENCFF606NRV, ENCFF621MOH 808128489 ENCODE Processing Pipeline a4f93fe8f4624da18766f97f41338a51 https://www.encodeproject.org/files/ENCFF908XOQ/@@download/ENCFF908XOQ.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF402CBS bed narrowPeak replicated peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF025ULA, ENCFF160QSW, ENCFF421SWL 488655 ENCODE Processing Pipeline e0ce3663ff7c09ca186d3a2686f881fa https://www.encodeproject.org/files/ENCFF402CBS/@@download/ENCFF402CBS.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF099PQL bigBed narrowPeak replicated peaks ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF402CBS 1187021 ENCODE Processing Pipeline 561d1dae0ae514939d825e37db6ad36d https://www.encodeproject.org/files/ENCFF099PQL/@@download/ENCFF099PQL.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF001KAF bam alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KAQ 1103348939 Bing Ren, UCSD 8745b1eeddc331a71fdaba89c79739a6 https://www.encodeproject.org/files/ENCFF001KAF/@@download/ENCFF001KAF.bam mm9 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KAG bigBed broadPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001XWE 1094134 Bing Ren, UCSD a7134a855532f2d5fd89a9a6dfe6f195 https://www.encodeproject.org/files/ENCFF001KAG/@@download/ENCFF001KAG.bigBed mm9 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KAH bam alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KAR 1050436777 Bing Ren, UCSD 3356cdd3baa9c794a46e353a771e00b9 https://www.encodeproject.org/files/ENCFF001KAH/@@download/ENCFF001KAH.bam mm9 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KAI bigWig signal ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KAF, ENCFF001KAH 57430652 Bing Ren, UCSD caf1344194bd89cea1110032f127c300 https://www.encodeproject.org/files/ENCFF001KAI/@@download/ENCFF001KAI.bigWig mm9 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KAQ fastq reads ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1105106510 Bing Ren, UCSD 6ff53a9837318475c43fb4379b485dbf https://www.encodeproject.org/files/ENCFF001KAQ/@@download/ENCFF001KAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCH/ released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KAR fastq reads ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1008295001 Bing Ren, UCSD 7a921e149a16e67a9db461b7c573f3c3 https://www.encodeproject.org/files/ENCFF001KAR/@@download/ENCFF001KAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCI/ released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001XWE bed broadPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF001KAF, ENCFF001KAH 798204 Bing Ren, UCSD fc6e225288b7ef1d7db5977e6932866c https://www.encodeproject.org/files/ENCFF001XWE/@@download/ENCFF001XWE.bed.gz mm9 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF501AAR bam unfiltered alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KAR, ENCFF018NEO 1097579614 ENCODE Processing Pipeline 3ee964dd69879137363568f953e3879d https://www.encodeproject.org/files/ENCFF501AAR/@@download/ENCFF501AAR.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF519SSA bam unfiltered alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAQ, ENCFF018NEO 1142195361 ENCODE Processing Pipeline b8313a014d9a3120480abd3dfae03ece https://www.encodeproject.org/files/ENCFF519SSA/@@download/ENCFF519SSA.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF469YGT bam alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KAR, ENCFF018NEO 826445673 ENCODE Processing Pipeline bd9628c247b4ae53f0485f8762ba0b4e https://www.encodeproject.org/files/ENCFF469YGT/@@download/ENCFF469YGT.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF511LMN bam alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAQ, ENCFF018NEO 663645853 ENCODE Processing Pipeline 7bcd97bf3aff53ef3bcf8be16e458d0f https://www.encodeproject.org/files/ENCFF511LMN/@@download/ENCFF511LMN.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF091IHR bed narrowPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF469YGT 2486459 ENCODE Processing Pipeline e04f7a6348bae5fcf0f9755856a4c61b https://www.encodeproject.org/files/ENCFF091IHR/@@download/ENCFF091IHR.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF112VPQ bed narrowPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF511LMN 2448339 ENCODE Processing Pipeline f3aa8d004429a6775a72b81873df0981 https://www.encodeproject.org/files/ENCFF112VPQ/@@download/ENCFF112VPQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF515WKU bed narrowPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF469YGT, ENCFF511LMN 3208373 ENCODE Processing Pipeline 4c48affa151799a3ddb16ac563c472ac https://www.encodeproject.org/files/ENCFF515WKU/@@download/ENCFF515WKU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF436DAN bigBed narrowPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF112VPQ 5933627 ENCODE Processing Pipeline d46cc1b77552f58f81522066d4968628 https://www.encodeproject.org/files/ENCFF436DAN/@@download/ENCFF436DAN.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF369YZO bigBed narrowPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF515WKU 9284540 ENCODE Processing Pipeline a3a45845100779e93c5fe4bb3cf26dec https://www.encodeproject.org/files/ENCFF369YZO/@@download/ENCFF369YZO.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF798ALV bigWig signal p-value ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF511LMN 313710300 ENCODE Processing Pipeline fa104bca3d4738e5b7c02e5ee27004f9 https://www.encodeproject.org/files/ENCFF798ALV/@@download/ENCFF798ALV.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF713VTR bigBed narrowPeak peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF091IHR 5818406 ENCODE Processing Pipeline c8c82603e059f83acb1163fcf02391e3 https://www.encodeproject.org/files/ENCFF713VTR/@@download/ENCFF713VTR.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF596WVS bigWig signal p-value ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF469YGT 363313038 ENCODE Processing Pipeline 41a5f69f85b24aeca9ee3097df87726e https://www.encodeproject.org/files/ENCFF596WVS/@@download/ENCFF596WVS.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF081GCJ bigWig signal p-value ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF469YGT, ENCFF511LMN 600460757 ENCODE Processing Pipeline 5bba7b09a4ed8bdfbba9d3801956bc4f https://www.encodeproject.org/files/ENCFF081GCJ/@@download/ENCFF081GCJ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF013BOZ bigWig fold change over control ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF511LMN 243100086 ENCODE Processing Pipeline 14261e8247f2a0df643505d2be4cbc99 https://www.encodeproject.org/files/ENCFF013BOZ/@@download/ENCFF013BOZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF994VHH bigWig fold change over control ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF469YGT 279260234 ENCODE Processing Pipeline be9f1e05a842d9d9835afa29f91a26e5 https://www.encodeproject.org/files/ENCFF994VHH/@@download/ENCFF994VHH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF819RQI bigWig fold change over control ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF469YGT, ENCFF511LMN 571431773 ENCODE Processing Pipeline 08d4490afa35529a0337fb15c5466d3f https://www.encodeproject.org/files/ENCFF819RQI/@@download/ENCFF819RQI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF512GBW bed narrowPeak replicated peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF091IHR, ENCFF112VPQ, ENCFF515WKU 2350287 ENCODE Processing Pipeline 6479ec31c805f5227a248b400069ff2b https://www.encodeproject.org/files/ENCFF512GBW/@@download/ENCFF512GBW.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF313OGJ bigBed narrowPeak replicated peaks ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF512GBW 5136703 ENCODE Processing Pipeline 264abc4273f9ffe1b14ef22bd5a9d48c https://www.encodeproject.org/files/ENCFF313OGJ/@@download/ENCFF313OGJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001NMN bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NMP 494112380 Michael Snyder, Stanford c08fb135b80658622f0d37be7f4bcdc0 https://www.encodeproject.org/files/ENCFF001NMN/@@download/ENCFF001NMN.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMO bigBed narrowPeak peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIT 1384461 Michael Snyder, Stanford 9f6e1fe3235576129335a1d82f8b7592 https://www.encodeproject.org/files/ENCFF001NMO/@@download/ENCFF001NMO.bigBed mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMP fastq reads ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 924136213 Michael Snyder, Stanford 66ae7802c84fc6688c87174a2d97dab7 https://www.encodeproject.org/files/ENCFF001NMP/@@download/ENCFF001NMP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMQ bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NMS 533213079 Michael Snyder, Stanford 6aa070ce9d7b8de0311b70c6256ae1e6 https://www.encodeproject.org/files/ENCFF001NMQ/@@download/ENCFF001NMQ.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMS fastq reads ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1011661612 Michael Snyder, Stanford e48a04e9f8f5422ae79b2f5c1946d05f https://www.encodeproject.org/files/ENCFF001NMS/@@download/ENCFF001NMS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMU bigWig signal ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMN, ENCFF001NMQ 226184010 Michael Snyder, Stanford d60a26c9d6092d6943dd060fe9a2e2eb https://www.encodeproject.org/files/ENCFF001NMU/@@download/ENCFF001NMU.bigWig mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001YIT bed narrowPeak peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NMN, ENCFF001NMQ 669329 Michael Snyder, Stanford 3f20cb242c71439f83de39017524b6bf https://www.encodeproject.org/files/ENCFF001YIT/@@download/ENCFF001YIT.bed.gz mm9 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF999SAQ bam unfiltered alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMP, ENCFF018NEO 1003203387 ENCODE Processing Pipeline b702997519e36934161170e22522b008 https://www.encodeproject.org/files/ENCFF999SAQ/@@download/ENCFF999SAQ.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF066VLL bam unfiltered alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMS, ENCFF018NEO 1090816579 ENCODE Processing Pipeline 6c47e143fc4c6c0cd020ff07acb61571 https://www.encodeproject.org/files/ENCFF066VLL/@@download/ENCFF066VLL.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF754UEE bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMP, ENCFF018NEO 682441286 ENCODE Processing Pipeline 4c45757dee1937c09541e5130579e17b https://www.encodeproject.org/files/ENCFF754UEE/@@download/ENCFF754UEE.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF815TDD bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMS, ENCFF018NEO 749079174 ENCODE Processing Pipeline c80bfb8a648b19ee92e630a9848305c5 https://www.encodeproject.org/files/ENCFF815TDD/@@download/ENCFF815TDD.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF326ZKJ bigWig signal p-value ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF754UEE 239870441 ENCODE Processing Pipeline cbe949eaf5b7ae11b3c37189cfab058e https://www.encodeproject.org/files/ENCFF326ZKJ/@@download/ENCFF326ZKJ.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF016KRY bigWig signal p-value ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF754UEE, ENCFF815TDD 223874434 ENCODE Processing Pipeline f7497e08df7d3e94b8e965f6fe20625b https://www.encodeproject.org/files/ENCFF016KRY/@@download/ENCFF016KRY.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF566EMP bigWig signal p-value ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF815TDD 241747612 ENCODE Processing Pipeline c4eb3c9b8dbcdd584e2bca01b80e3126 https://www.encodeproject.org/files/ENCFF566EMP/@@download/ENCFF566EMP.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF136EEQ bigWig fold change over control ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF815TDD 302527400 ENCODE Processing Pipeline ff633175c41a34a49cc32416b88898fe https://www.encodeproject.org/files/ENCFF136EEQ/@@download/ENCFF136EEQ.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF210IYE bigWig fold change over control ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF754UEE 286299166 ENCODE Processing Pipeline c3cab5faec702ae2715ee9fd18b787d9 https://www.encodeproject.org/files/ENCFF210IYE/@@download/ENCFF210IYE.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF365FLT bigWig fold change over control ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF754UEE, ENCFF815TDD 507274311 ENCODE Processing Pipeline 0c4daa6cc9779f93ef9007d50caf9e7a https://www.encodeproject.org/files/ENCFF365FLT/@@download/ENCFF365FLT.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF441NPO bed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF754UEE 4454703 ENCODE Processing Pipeline af5e1aea74440d739a7af343a649e42c https://www.encodeproject.org/files/ENCFF441NPO/@@download/ENCFF441NPO.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF572NST bed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF339ZWC, ENCFF815TDD 4757189 ENCODE Processing Pipeline ae920262ced3f32f413f687961061029 https://www.encodeproject.org/files/ENCFF572NST/@@download/ENCFF572NST.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF728MLD bigBed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF441NPO 10530744 ENCODE Processing Pipeline 046794c250dc46d4734d2b36c9c11e71 https://www.encodeproject.org/files/ENCFF728MLD/@@download/ENCFF728MLD.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF870MFE bigBed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF572NST 10718007 ENCODE Processing Pipeline d91b19fb4c951aac7c209c73975dd36a https://www.encodeproject.org/files/ENCFF870MFE/@@download/ENCFF870MFE.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF646FIZ bed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF339ZWC, ENCFF754UEE, ENCFF815TDD 6329053 ENCODE Processing Pipeline 8a92e5defb1ceb2aaea950c4e1d19a65 https://www.encodeproject.org/files/ENCFF646FIZ/@@download/ENCFF646FIZ.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF321SFZ bed narrowPeak conservative idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF441NPO, ENCFF547MET, ENCFF572NST, ENCFF646FIZ 541374 ENCODE Processing Pipeline d078c8559ba942b5c18da56f58aea993 https://www.encodeproject.org/files/ENCFF321SFZ/@@download/ENCFF321SFZ.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF197RFK bigBed narrowPeak peaks and background as input for IDR ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF646FIZ 13202151 ENCODE Processing Pipeline 41ccd7db39836b1d23158fa63c495276 https://www.encodeproject.org/files/ENCFF197RFK/@@download/ENCFF197RFK.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF561HFB bed narrowPeak optimal idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF441NPO, ENCFF547MET, ENCFF572NST, ENCFF646FIZ 554771 ENCODE Processing Pipeline b74cebaea8173499b5e08c84a42c358e https://www.encodeproject.org/files/ENCFF561HFB/@@download/ENCFF561HFB.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF619TGD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF321SFZ 1066327 ENCODE Processing Pipeline 1701281e3d89a262e8302f54d82c1581 https://www.encodeproject.org/files/ENCFF619TGD/@@download/ENCFF619TGD.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF296CTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF561HFB 1086489 ENCODE Processing Pipeline 140bf988b6e483521ebc716554e7a234 https://www.encodeproject.org/files/ENCFF296CTA/@@download/ENCFF296CTA.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001LLC bam alignments ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLM 581065715 Bing Ren, UCSD 340663c09fa363482c56fa335a5d722b https://www.encodeproject.org/files/ENCFF001LLC/@@download/ENCFF001LLC.bam mm9 released low read length, control low read depth, low read depth ENCFF001LLD bigBed broadPeak peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001YAJ 294601 Bing Ren, UCSD 951a681f30cdb45ac9874ccc1451a466 https://www.encodeproject.org/files/ENCFF001LLD/@@download/ENCFF001LLD.bigBed mm9 released low read length, control low read depth, low read depth ENCFF001LLJ bigWig signal ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLC 73170616 Bing Ren, UCSD bc076170b4c8f3158cacc66c92e636b4 https://www.encodeproject.org/files/ENCFF001LLJ/@@download/ENCFF001LLJ.bigWig mm9 released low read length, control low read depth, low read depth ENCFF001LLM fastq reads ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 824516883 Bing Ren, UCSD 0537221a1785e08a4730c9510e602e8d https://www.encodeproject.org/files/ENCFF001LLM/@@download/ENCFF001LLM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKF/ released low read length, control low read depth, low read depth ENCFF001YAJ bed broadPeak peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLC 180958 Bing Ren, UCSD 004972470b29dad76130c0f77e97c836 https://www.encodeproject.org/files/ENCFF001YAJ/@@download/ENCFF001YAJ.bed.gz mm9 released low read length, control low read depth, low read depth ENCFF036FLT bam unfiltered alignments ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLM, ENCFF018NEO 919445539 ENCODE Processing Pipeline 7abc2e753af6aa9ca11d03c304b71d33 https://www.encodeproject.org/files/ENCFF036FLT/@@download/ENCFF036FLT.bam mm10 released low read length, control low read depth, low read depth ENCFF680IVV bam alignments ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLM, ENCFF018NEO 513996540 ENCODE Processing Pipeline 22de7587aef0eaaa1d167feb514347c7 https://www.encodeproject.org/files/ENCFF680IVV/@@download/ENCFF680IVV.bam mm10 released low read length, control low read depth, low read depth ENCFF827IYU bigWig signal p-value ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF396FNQ, ENCFF680IVV 246259150 ENCODE Processing Pipeline 6ccea41f8241bb31f88f16c4ad7ac859 https://www.encodeproject.org/files/ENCFF827IYU/@@download/ENCFF827IYU.bigWig mm10 released low read length, control low read depth, low read depth ENCFF916PLK bigWig fold change over control ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF396FNQ, ENCFF680IVV 203237261 ENCODE Processing Pipeline ed646d2a7c6f22ba0f2c2050bd061fae https://www.encodeproject.org/files/ENCFF916PLK/@@download/ENCFF916PLK.bigWig mm10 released low read length, control low read depth, low read depth ENCFF632YML bigBed narrowPeak peaks and background as input for IDR ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF160ZYB 1254954 ENCODE Processing Pipeline 2fc74bef8597da7b2a4dc44a47f8190e https://www.encodeproject.org/files/ENCFF632YML/@@download/ENCFF632YML.bigBed mm10 released low read length, control low read depth, low read depth ENCFF160ZYB bed narrowPeak peaks and background as input for IDR ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF396FNQ, ENCFF680IVV 542069 ENCODE Processing Pipeline 60cf0a6fcf9d16b66207b4d6be454045 https://www.encodeproject.org/files/ENCFF160ZYB/@@download/ENCFF160ZYB.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF946NTK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF160ZYB, ENCFF547MET 105141 ENCODE Processing Pipeline 2584266e3bab63159c71820634f457dc https://www.encodeproject.org/files/ENCFF946NTK/@@download/ENCFF946NTK.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF573WST bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF946NTK 211033 ENCODE Processing Pipeline ce733d3e22676762e123a49e72bb6dba https://www.encodeproject.org/files/ENCFF573WST/@@download/ENCFF573WST.bigBed mm10 released low read length, control low read depth, low read depth ENCFF001OBD bigBed narrowPeak peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YKK 154187 Michael Snyder, Stanford 686fd47c02ecdb84308c8fa281c46872 https://www.encodeproject.org/files/ENCFF001OBD/@@download/ENCFF001OBD.bigBed mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBE bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001OBF 471432179 Michael Snyder, Stanford 591a19e266d50e5f4098b104ccd630d7 https://www.encodeproject.org/files/ENCFF001OBE/@@download/ENCFF001OBE.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBF fastq reads ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1088099293 Michael Snyder, Stanford 19d8aea39e93d119e68090a7c5c34fb7 https://www.encodeproject.org/files/ENCFF001OBF/@@download/ENCFF001OBF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBH fastq reads ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 880089580 Michael Snyder, Stanford 64a3973a2631d2d9e7788ebf2778bff5 https://www.encodeproject.org/files/ENCFF001OBH/@@download/ENCFF001OBH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBK bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001OBH 456315717 Michael Snyder, Stanford e1ec088c73366e53ec219175dc138b9e https://www.encodeproject.org/files/ENCFF001OBK/@@download/ENCFF001OBK.bam mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001OBL bigWig signal ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OBE, ENCFF001OBK 154232464 Michael Snyder, Stanford 094d8ade166983bc51e37d19e3c9b643 https://www.encodeproject.org/files/ENCFF001OBL/@@download/ENCFF001OBL.bigWig mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001YKK bed narrowPeak peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001OBE, ENCFF001OBK 43686 Michael Snyder, Stanford f498776d074cb53f697bf0d8b7707385 https://www.encodeproject.org/files/ENCFF001YKK/@@download/ENCFF001YKK.bed.gz mm9 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF110GID bam unfiltered alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OBH, ENCFF018NEO 980370221 ENCODE Processing Pipeline 2c77564b2c0b509796531600390c6109 https://www.encodeproject.org/files/ENCFF110GID/@@download/ENCFF110GID.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF511LLX bam unfiltered alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OBF, ENCFF018NEO 1144030005 ENCODE Processing Pipeline 828590f86b95b28a02bfa1c789fffcfb https://www.encodeproject.org/files/ENCFF511LLX/@@download/ENCFF511LLX.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF801WZN bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OBH, ENCFF018NEO 625981038 ENCODE Processing Pipeline 9e4b19c458c706a3a528945741164285 https://www.encodeproject.org/files/ENCFF801WZN/@@download/ENCFF801WZN.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF369IFU bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OBF, ENCFF018NEO 576855560 ENCODE Processing Pipeline 0a9db6f02ac4fda55d07db688def80bf https://www.encodeproject.org/files/ENCFF369IFU/@@download/ENCFF369IFU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF972TRK bigWig signal p-value ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF369IFU, ENCFF801WZN 360595954 ENCODE Processing Pipeline cd94696e36cbe46dfa5850bde39cd8c6 https://www.encodeproject.org/files/ENCFF972TRK/@@download/ENCFF972TRK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF133PTA bigWig signal p-value ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF369IFU 292561761 ENCODE Processing Pipeline a967522a0a42b398cf8851a02a5adb33 https://www.encodeproject.org/files/ENCFF133PTA/@@download/ENCFF133PTA.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF046NFM bigWig signal p-value ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF801WZN 273080998 ENCODE Processing Pipeline 5ed0254197d37312a029d984d82501a5 https://www.encodeproject.org/files/ENCFF046NFM/@@download/ENCFF046NFM.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF592DIZ bigWig fold change over control ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF369IFU 260517104 ENCODE Processing Pipeline 974865756b9d969714745151b07a27fe https://www.encodeproject.org/files/ENCFF592DIZ/@@download/ENCFF592DIZ.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF447PPK bigWig fold change over control ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF801WZN 278473508 ENCODE Processing Pipeline c08813d449e1030551511cbc59131d5c https://www.encodeproject.org/files/ENCFF447PPK/@@download/ENCFF447PPK.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF585YOH bigWig fold change over control ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF369IFU, ENCFF801WZN 479838114 ENCODE Processing Pipeline 4ec02c32ad4eb01755060f93afa17caf https://www.encodeproject.org/files/ENCFF585YOH/@@download/ENCFF585YOH.bigWig mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF470PMX bed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF369IFU 4741461 ENCODE Processing Pipeline 904209b0e43904dc130628aa6cb45b57 https://www.encodeproject.org/files/ENCFF470PMX/@@download/ENCFF470PMX.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF014SUM bed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF801WZN 4627809 ENCODE Processing Pipeline 3911010d5ceb1d2d64aa2cefd1e6430d https://www.encodeproject.org/files/ENCFF014SUM/@@download/ENCFF014SUM.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF745JTK bed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF369IFU, ENCFF801WZN 5355939 ENCODE Processing Pipeline 10bc6adfd860247cb1ce15f3cc7dca17 https://www.encodeproject.org/files/ENCFF745JTK/@@download/ENCFF745JTK.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF066CEV bed narrowPeak optimal idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF014SUM, ENCFF470PMX, ENCFF547MET, ENCFF745JTK 85661 ENCODE Processing Pipeline 369dc9b71be1b62101d7682e26dc451c https://www.encodeproject.org/files/ENCFF066CEV/@@download/ENCFF066CEV.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF349UZL bigBed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF470PMX 10537897 ENCODE Processing Pipeline 44004118070e686126563b34950069b6 https://www.encodeproject.org/files/ENCFF349UZL/@@download/ENCFF349UZL.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF428TZR bigBed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF014SUM 10559415 ENCODE Processing Pipeline b5436595c8e6ec8ea4d58ddcd53ff2cc https://www.encodeproject.org/files/ENCFF428TZR/@@download/ENCFF428TZR.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF063JON bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF242KCM 187798 ENCODE Processing Pipeline 5933e5f97de30014bb028a9281eab4d5 https://www.encodeproject.org/files/ENCFF063JON/@@download/ENCFF063JON.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF611LJI bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF066CEV 216983 ENCODE Processing Pipeline b0f8f387e6bedf22237114f201aa310f https://www.encodeproject.org/files/ENCFF611LJI/@@download/ENCFF611LJI.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF225OPK bigBed narrowPeak peaks and background as input for IDR ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF745JTK 10786266 ENCODE Processing Pipeline 45baa5b6f810491ad4de7cd3f8f6e2ee https://www.encodeproject.org/files/ENCFF225OPK/@@download/ENCFF225OPK.bigBed mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF242KCM bed narrowPeak conservative idr thresholded peaks ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF014SUM, ENCFF470PMX, ENCFF547MET, ENCFF745JTK 67241 ENCODE Processing Pipeline b260365e259617b7ec69098f452b2381 https://www.encodeproject.org/files/ENCFF242KCM/@@download/ENCFF242KCM.bed.gz mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF001KDH bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KDQ 468836405 Bing Ren, UCSD daf6084c60d1679a3c475c724693f1c9 https://www.encodeproject.org/files/ENCFF001KDH/@@download/ENCFF001KDH.bam mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KDI bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KDO 444961874 Bing Ren, UCSD 5d932e14b865527d2fd5dbdf587953ce https://www.encodeproject.org/files/ENCFF001KDI/@@download/ENCFF001KDI.bam mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KDJ bigBed broadPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XWR 593235 Bing Ren, UCSD b1e5d4b778146ebcd12bee0788f510a7 https://www.encodeproject.org/files/ENCFF001KDJ/@@download/ENCFF001KDJ.bigBed mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KDN bigWig signal ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KDH, ENCFF001KDI 51066122 Bing Ren, UCSD 62fff3b89a1b22f8a31206ba9ca97f22 https://www.encodeproject.org/files/ENCFF001KDN/@@download/ENCFF001KDN.bigWig mm9 released low read length, inconsistent platforms insufficient read depth ENCFF001KDO fastq reads ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 36 single-ended 428188729 Bing Ren, UCSD 22540e35aaa015ffda4c37f66638628b https://www.encodeproject.org/files/ENCFF001KDO/@@download/ENCFF001KDO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEX/ released low read length, inconsistent platforms insufficient read depth ENCFF001KDQ fastq reads ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 456751709 Bing Ren, UCSD 6e2b1fe7346fbc365cea6f119077c9a8 https://www.encodeproject.org/files/ENCFF001KDQ/@@download/ENCFF001KDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KEU/ released low read length, inconsistent platforms insufficient read depth ENCFF001XWR bed broadPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KDH, ENCFF001KDI 356617 Bing Ren, UCSD 54db854612bb955083c747d1491ada7f https://www.encodeproject.org/files/ENCFF001XWR/@@download/ENCFF001XWR.bed.gz mm9 released low read length, inconsistent platforms insufficient read depth ENCFF145CIA bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KDO, ENCFF806TVZ 324126247 ENCODE Processing Pipeline ce7a44637830eda625fd567ffb38c506 https://www.encodeproject.org/files/ENCFF145CIA/@@download/ENCFF145CIA.bam mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF522IYY bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KDQ, ENCFF806TVZ 322334995 ENCODE Processing Pipeline b0206f0fcc9dab8be6315f32ff6c25bf https://www.encodeproject.org/files/ENCFF522IYY/@@download/ENCFF522IYY.bam mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF494NFQ bed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF145CIA, ENCFF343KWM, ENCFF522IYY, ENCFF749CPB 1536014 ENCODE Processing Pipeline 0d9b09ad9e1005a37b00a36c3e2858b8 https://www.encodeproject.org/files/ENCFF494NFQ/@@download/ENCFF494NFQ.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF031VYJ bigBed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF531DGU 3491698 ENCODE Processing Pipeline e1a05a8e1abba4b1b8efde3c3a18fe80 https://www.encodeproject.org/files/ENCFF031VYJ/@@download/ENCFF031VYJ.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF516VWB bed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF343KWM, ENCFF522IYY, ENCFF749CPB 1399116 ENCODE Processing Pipeline 2c971a959467d6d0b1387e48b0c7124d https://www.encodeproject.org/files/ENCFF516VWB/@@download/ENCFF516VWB.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF531DGU bed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF145CIA, ENCFF343KWM, ENCFF749CPB 1242263 ENCODE Processing Pipeline 1c5ae7fc448da44e721d025f4bc1dcc8 https://www.encodeproject.org/files/ENCFF531DGU/@@download/ENCFF531DGU.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF925GXU bigBed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF516VWB 3846223 ENCODE Processing Pipeline ceef56741546eb4a34ed0be1974ced28 https://www.encodeproject.org/files/ENCFF925GXU/@@download/ENCFF925GXU.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF349NFD bigBed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF494NFQ 4135514 ENCODE Processing Pipeline 926b835acd988b645d488d2c72cb688c https://www.encodeproject.org/files/ENCFF349NFD/@@download/ENCFF349NFD.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF126IHH bigWig signal p-value ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF145CIA, ENCFF343KWM, ENCFF749CPB 336491707 ENCODE Processing Pipeline c3a9df434761f426ec3cb4d52d8411e5 https://www.encodeproject.org/files/ENCFF126IHH/@@download/ENCFF126IHH.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF133OQM bigWig signal p-value ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF145CIA, ENCFF343KWM, ENCFF522IYY, ENCFF749CPB 385011374 ENCODE Processing Pipeline e1f116d2e68c3ec0fbdaa78fb8af58b3 https://www.encodeproject.org/files/ENCFF133OQM/@@download/ENCFF133OQM.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF517MOV bigBed narrowPeak replicated peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF020KMG 2717430 ENCODE Processing Pipeline 9a7cd56c93f43a875349f2224fb0f2b9 https://www.encodeproject.org/files/ENCFF517MOV/@@download/ENCFF517MOV.bigBed mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF005DCW bigWig signal p-value ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF343KWM, ENCFF522IYY, ENCFF749CPB 361925253 ENCODE Processing Pipeline 3ce1bc1b5135efa3783eb561dc1b26a1 https://www.encodeproject.org/files/ENCFF005DCW/@@download/ENCFF005DCW.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF362BSZ bigWig fold change over control ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF343KWM, ENCFF522IYY, ENCFF749CPB 209658787 ENCODE Processing Pipeline ab14735f3be889e44ef2de319af4a703 https://www.encodeproject.org/files/ENCFF362BSZ/@@download/ENCFF362BSZ.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF711DPW bigWig fold change over control ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF145CIA, ENCFF343KWM, ENCFF749CPB 221028167 ENCODE Processing Pipeline be269d75d6bfd55a458767f0af59f035 https://www.encodeproject.org/files/ENCFF711DPW/@@download/ENCFF711DPW.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF687MZJ bigWig fold change over control ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF145CIA, ENCFF343KWM, ENCFF522IYY, ENCFF749CPB 345873958 ENCODE Processing Pipeline a0609e6e5d871321a1f05adf3587c1fd https://www.encodeproject.org/files/ENCFF687MZJ/@@download/ENCFF687MZJ.bigWig mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF020KMG bed narrowPeak replicated peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF494NFQ, ENCFF516VWB, ENCFF531DGU 1345121 ENCODE Processing Pipeline 149b19c235eebad320b94feefc089365 https://www.encodeproject.org/files/ENCFF020KMG/@@download/ENCFF020KMG.bed.gz mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF589SBN bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KDQ, ENCFF018NEO 322292687 ENCODE Processing Pipeline f0067bee7eb2b41b59296b7160293cc7 https://www.encodeproject.org/files/ENCFF589SBN/@@download/ENCFF589SBN.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF341ZQL bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KDO, ENCFF018NEO 324064528 ENCODE Processing Pipeline 852269d9ec7edea044402294f20a7ea7 https://www.encodeproject.org/files/ENCFF341ZQL/@@download/ENCFF341ZQL.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF276VUE bed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF439WCI, ENCFF589SBN, ENCFF683TKC 1384201 ENCODE Processing Pipeline d294d6b2850b5dffc4bdf680d12aa188 https://www.encodeproject.org/files/ENCFF276VUE/@@download/ENCFF276VUE.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF010TEX bigBed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF452OHE 3493951 ENCODE Processing Pipeline 682cae5610ebbeac05a67dd0c00104f2 https://www.encodeproject.org/files/ENCFF010TEX/@@download/ENCFF010TEX.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF452OHE bed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF341ZQL, ENCFF439WCI, ENCFF683TKC 1242230 ENCODE Processing Pipeline 968f031001dbe6bb9211458496ef2da9 https://www.encodeproject.org/files/ENCFF452OHE/@@download/ENCFF452OHE.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF857FNO bed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF341ZQL, ENCFF439WCI, ENCFF589SBN, ENCFF683TKC 1536467 ENCODE Processing Pipeline a2cb43670a1f74d2e44232809a8322aa https://www.encodeproject.org/files/ENCFF857FNO/@@download/ENCFF857FNO.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF718IKM bigBed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF276VUE 3812239 ENCODE Processing Pipeline 5e7fd16ab1c920f0c5c1f3db7052c95c https://www.encodeproject.org/files/ENCFF718IKM/@@download/ENCFF718IKM.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF224VQD bigBed narrowPeak peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF857FNO 4138025 ENCODE Processing Pipeline cd63cf6809393bf467b0fa20af177d6a https://www.encodeproject.org/files/ENCFF224VQD/@@download/ENCFF224VQD.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF589JOH bigWig signal p-value ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF439WCI, ENCFF589SBN, ENCFF683TKC 318881127 ENCODE Processing Pipeline 9b46d87875cdb0b0c1d76cbca2c42dc3 https://www.encodeproject.org/files/ENCFF589JOH/@@download/ENCFF589JOH.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF767FOH bigWig signal p-value ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF341ZQL, ENCFF439WCI, ENCFF683TKC 310034869 ENCODE Processing Pipeline bdf337cd65dbf6cc6724703a88d7fe36 https://www.encodeproject.org/files/ENCFF767FOH/@@download/ENCFF767FOH.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF646XOT bigWig signal p-value ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF341ZQL, ENCFF439WCI, ENCFF589SBN, ENCFF683TKC 386076257 ENCODE Processing Pipeline 2ccf7a5502ac5e5dc62f1e01a1cf1c9a https://www.encodeproject.org/files/ENCFF646XOT/@@download/ENCFF646XOT.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF473FKW bigWig fold change over control ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF439WCI, ENCFF589SBN, ENCFF683TKC 213235744 ENCODE Processing Pipeline ef7462af864b0f7e8db1718c42fa4878 https://www.encodeproject.org/files/ENCFF473FKW/@@download/ENCFF473FKW.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF085RDJ bigWig fold change over control ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF341ZQL, ENCFF439WCI, ENCFF683TKC 221667826 ENCODE Processing Pipeline 68df6dfb61e67a30a2d190653dab7d10 https://www.encodeproject.org/files/ENCFF085RDJ/@@download/ENCFF085RDJ.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF124CBV bigWig fold change over control ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF341ZQL, ENCFF439WCI, ENCFF589SBN, ENCFF683TKC 345436471 ENCODE Processing Pipeline 0840716a84af1b93ef8b43b2bb0f6aa8 https://www.encodeproject.org/files/ENCFF124CBV/@@download/ENCFF124CBV.bigWig mm10 released low read length, inconsistent platforms insufficient read depth ENCFF360VIS bed narrowPeak replicated peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF276VUE, ENCFF452OHE, ENCFF857FNO 1346847 ENCODE Processing Pipeline 8c25499b327c71e3bab4faaf00c45f4b https://www.encodeproject.org/files/ENCFF360VIS/@@download/ENCFF360VIS.bed.gz mm10 released low read length, inconsistent platforms insufficient read depth ENCFF583TQN bigBed narrowPeak replicated peaks ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF360VIS 2718245 ENCODE Processing Pipeline fed3d5e08e52b75f550bf5848d4e6810 https://www.encodeproject.org/files/ENCFF583TQN/@@download/ENCFF583TQN.bigBed mm10 released low read length, inconsistent platforms insufficient read depth ENCFF302FPA bam unfiltered alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KDO, ENCFF806TVZ 482269182 ENCODE Processing Pipeline 69739e4302e81f7e94d5d0e8441514a3 https://www.encodeproject.org/files/ENCFF302FPA/@@download/ENCFF302FPA.bam mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF550JLH bam unfiltered alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KDO, ENCFF018NEO 482806297 ENCODE Processing Pipeline 871230968541ea37ca6b2747739d7ba6 https://www.encodeproject.org/files/ENCFF550JLH/@@download/ENCFF550JLH.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF145LRV bam unfiltered alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KDQ, ENCFF806TVZ 502821831 ENCODE Processing Pipeline 573f29f2bf0e4b3036eab2b15fda8216 https://www.encodeproject.org/files/ENCFF145LRV/@@download/ENCFF145LRV.bam mm10-minimal archived low read length, inconsistent platforms insufficient read depth ENCFF684YKX bam unfiltered alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KDQ, ENCFF018NEO 503267418 ENCODE Processing Pipeline 78a9ccb828b43dead93fcdfc20aa1f30 https://www.encodeproject.org/files/ENCFF684YKX/@@download/ENCFF684YKX.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF860HYW fastq reads ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 1 50 single-ended 2329865525 Bing Ren, UCSD 8e18a16593cbf718c1da92d25b8f3806 SRA:SRR3651923 https://www.encodeproject.org/files/ENCFF860HYW/@@download/ENCFF860HYW.fastq.gz Illumina HiSeq 2500 /files/ENCFF324AEZ/ released inconsistent platforms ENCFF482OLO fastq reads ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 1 50 single-ended 2171152828 Bing Ren, UCSD 3d8f84955f44067b5eeaf0949e55db1f SRA:SRR3651924 https://www.encodeproject.org/files/ENCFF482OLO/@@download/ENCFF482OLO.fastq.gz Illumina HiSeq 2500 /files/ENCFF637RQH/ released inconsistent platforms ENCFF687IDO bam alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF806TVZ, ENCFF860HYW 1233725034 ENCODE Processing Pipeline 9796c83af7d7f33bcc0ce9177df792e7 https://www.encodeproject.org/files/ENCFF687IDO/@@download/ENCFF687IDO.bam mm10-minimal archived inconsistent platforms ENCFF971ZBT bam alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF482OLO, ENCFF806TVZ 1057578874 ENCODE Processing Pipeline fd95e68c58764c66373c16322bfbd3c8 https://www.encodeproject.org/files/ENCFF971ZBT/@@download/ENCFF971ZBT.bam mm10-minimal archived inconsistent platforms ENCFF811SOM bigBed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF086XSA 1765343 ENCODE Processing Pipeline 1d18dd97b0528043858658994423befa https://www.encodeproject.org/files/ENCFF811SOM/@@download/ENCFF811SOM.bigBed mm10-minimal archived inconsistent platforms ENCFF915HHN bigBed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF136MRJ 3607091 ENCODE Processing Pipeline 4bc9325097bd70e47edf4ce842ce6947 https://www.encodeproject.org/files/ENCFF915HHN/@@download/ENCFF915HHN.bigBed mm10-minimal archived inconsistent platforms ENCFF086XSA bed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF069WCH, ENCFF971ZBT 838041 ENCODE Processing Pipeline aa6a38f3d75633ffbe00b78fabc0abb6 https://www.encodeproject.org/files/ENCFF086XSA/@@download/ENCFF086XSA.bed.gz mm10-minimal archived inconsistent platforms ENCFF136MRJ bed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF687IDO, ENCFF971ZBT 1503303 ENCODE Processing Pipeline 49b4159019872e576b393b7754565904 https://www.encodeproject.org/files/ENCFF136MRJ/@@download/ENCFF136MRJ.bed.gz mm10-minimal archived inconsistent platforms ENCFF080VMZ bigBed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF632VXO 2111076 ENCODE Processing Pipeline 92479cb6ed952b7219f8ba6cd9f44a2c https://www.encodeproject.org/files/ENCFF080VMZ/@@download/ENCFF080VMZ.bigBed mm10-minimal archived inconsistent platforms ENCFF632VXO bed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF101KOM, ENCFF687IDO 1026949 ENCODE Processing Pipeline 07d8611a0d06ea10da1dd93ef807c925 https://www.encodeproject.org/files/ENCFF632VXO/@@download/ENCFF632VXO.bed.gz mm10-minimal archived inconsistent platforms ENCFF987XVP bigWig signal p-value ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF069WCH, ENCFF971ZBT 396934253 ENCODE Processing Pipeline dfc4a7b11ab9013f21bcd24e916f3cb7 https://www.encodeproject.org/files/ENCFF987XVP/@@download/ENCFF987XVP.bigWig mm10-minimal archived inconsistent platforms ENCFF509PNC bigWig signal p-value ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF101KOM, ENCFF687IDO 425532574 ENCODE Processing Pipeline 718d9071cbaa8e51f496408b66e1da92 https://www.encodeproject.org/files/ENCFF509PNC/@@download/ENCFF509PNC.bigWig mm10-minimal archived inconsistent platforms ENCFF943EXO bigWig signal p-value ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF687IDO, ENCFF971ZBT 775471134 ENCODE Processing Pipeline 5677b6027fa94dec13dbbd8a872a431a https://www.encodeproject.org/files/ENCFF943EXO/@@download/ENCFF943EXO.bigWig mm10-minimal archived inconsistent platforms ENCFF007XHE bigWig fold change over control ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF069WCH, ENCFF971ZBT 396247384 ENCODE Processing Pipeline 4f559ff6e33c326a2b11d747077040dc https://www.encodeproject.org/files/ENCFF007XHE/@@download/ENCFF007XHE.bigWig mm10-minimal archived inconsistent platforms ENCFF016ZOO bigWig fold change over control ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF101KOM, ENCFF687IDO 485539339 ENCODE Processing Pipeline 89659db7728ae18537cf17482902ebf5 https://www.encodeproject.org/files/ENCFF016ZOO/@@download/ENCFF016ZOO.bigWig mm10-minimal archived inconsistent platforms ENCFF051RXR bigBed narrowPeak replicated peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF901HBD 1262103 ENCODE Processing Pipeline 8f70affa193c27199f43bb18a9f11fee https://www.encodeproject.org/files/ENCFF051RXR/@@download/ENCFF051RXR.bigBed mm10-minimal archived inconsistent platforms ENCFF901HBD bed narrowPeak replicated peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF086XSA, ENCFF136MRJ, ENCFF632VXO 520205 ENCODE Processing Pipeline ad516ee9602901c5dd0a8d779c77594f https://www.encodeproject.org/files/ENCFF901HBD/@@download/ENCFF901HBD.bed.gz mm10-minimal archived inconsistent platforms ENCFF488EJK bigWig fold change over control ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF069WCH, ENCFF101KOM, ENCFF687IDO, ENCFF971ZBT 883712598 ENCODE Processing Pipeline 47bf7ad8fe6936ac14f067a54ae888d2 https://www.encodeproject.org/files/ENCFF488EJK/@@download/ENCFF488EJK.bigWig mm10-minimal archived inconsistent platforms ENCFF715VBY bam unfiltered alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF482OLO 2642516131 ENCODE Processing Pipeline 5fbed194d5481ea4d6b473e59e72ca1d https://www.encodeproject.org/files/ENCFF715VBY/@@download/ENCFF715VBY.bam mm10 released inconsistent platforms ENCFF012XAB bam unfiltered alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF860HYW 2842513001 ENCODE Processing Pipeline 4ecfc4d0c6697bb71b2feaa8dfdbbf03 https://www.encodeproject.org/files/ENCFF012XAB/@@download/ENCFF012XAB.bam mm10 released inconsistent platforms ENCFF235DGQ bam alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF482OLO 1056893688 ENCODE Processing Pipeline 0bfc2cbb58b20a9385e6792d88b04c0f https://www.encodeproject.org/files/ENCFF235DGQ/@@download/ENCFF235DGQ.bam mm10 released inconsistent platforms ENCFF461RGB bam alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF860HYW 1232995473 ENCODE Processing Pipeline 19cade27b3eb1f661513462d797e689f https://www.encodeproject.org/files/ENCFF461RGB/@@download/ENCFF461RGB.bam mm10 released inconsistent platforms ENCFF896FQZ bigBed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF330PLO 2050461 ENCODE Processing Pipeline 8d03969b7e2dd2d7c3f959746d293258 https://www.encodeproject.org/files/ENCFF896FQZ/@@download/ENCFF896FQZ.bigBed mm10 released inconsistent platforms ENCFF696BAV bed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF235DGQ, ENCFF461RGB, ENCFF814RAT, ENCFF904KQI 1596815 ENCODE Processing Pipeline acfb98aae424e9edb17f1d9bd3d7e6ec https://www.encodeproject.org/files/ENCFF696BAV/@@download/ENCFF696BAV.bed.gz mm10 released inconsistent platforms ENCFF723VIF bigBed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF617WJG 1768314 ENCODE Processing Pipeline 80c049ab756a540db84876c942728ca3 https://www.encodeproject.org/files/ENCFF723VIF/@@download/ENCFF723VIF.bigBed mm10 released inconsistent platforms ENCFF617WJG bed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF235DGQ, ENCFF904KQI 838525 ENCODE Processing Pipeline 50762baaba639ebfa0888377751a1f01 https://www.encodeproject.org/files/ENCFF617WJG/@@download/ENCFF617WJG.bed.gz mm10 released inconsistent platforms ENCFF330PLO bed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF461RGB, ENCFF814RAT 994800 ENCODE Processing Pipeline e5d6e44da8dcdb5643ea78fef45c5a88 https://www.encodeproject.org/files/ENCFF330PLO/@@download/ENCFF330PLO.bed.gz mm10 released inconsistent platforms ENCFF237EYR bigBed narrowPeak peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF696BAV 3790714 ENCODE Processing Pipeline 0cf8bbc4757aad53d52304531a06ea62 https://www.encodeproject.org/files/ENCFF237EYR/@@download/ENCFF237EYR.bigBed mm10 released inconsistent platforms ENCFF709QHR bigWig signal p-value ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF235DGQ, ENCFF904KQI 508202099 ENCODE Processing Pipeline 89866f7da4b2015a2e1e32ffe83b356b https://www.encodeproject.org/files/ENCFF709QHR/@@download/ENCFF709QHR.bigWig mm10 released inconsistent platforms ENCFF495VRT bigWig fold change over control ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF235DGQ, ENCFF461RGB, ENCFF814RAT, ENCFF904KQI 1007762923 ENCODE Processing Pipeline 9bf5308a79c4e41ebeccb5d1a6caa574 https://www.encodeproject.org/files/ENCFF495VRT/@@download/ENCFF495VRT.bigWig mm10 released inconsistent platforms ENCFF371XJE bigWig signal p-value ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF461RGB, ENCFF814RAT 470694930 ENCODE Processing Pipeline d6279a2cf275cfdaf0d06c6c26f0e406 https://www.encodeproject.org/files/ENCFF371XJE/@@download/ENCFF371XJE.bigWig mm10 released inconsistent platforms ENCFF660HEA bigWig signal p-value ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF235DGQ, ENCFF461RGB, ENCFF814RAT, ENCFF904KQI 806798414 ENCODE Processing Pipeline 0df7caf63c8e42fee382137f58d99334 https://www.encodeproject.org/files/ENCFF660HEA/@@download/ENCFF660HEA.bigWig mm10 released inconsistent platforms ENCFF959XVG bigWig fold change over control ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 ENCFF235DGQ, ENCFF904KQI 455126935 ENCODE Processing Pipeline 93d0204a490f17566896670fcae1eeea https://www.encodeproject.org/files/ENCFF959XVG/@@download/ENCFF959XVG.bigWig mm10 released inconsistent platforms ENCFF501AUV bigWig fold change over control ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 ENCFF461RGB, ENCFF814RAT 522287897 ENCODE Processing Pipeline aa55ac084fa2e3b68c4029a49bf1950c https://www.encodeproject.org/files/ENCFF501AUV/@@download/ENCFF501AUV.bigWig mm10 released inconsistent platforms ENCFF928WRM bed narrowPeak replicated peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF330PLO, ENCFF617WJG, ENCFF696BAV 543534 ENCODE Processing Pipeline ad89efebce87fa81e78f19a838230ed3 https://www.encodeproject.org/files/ENCFF928WRM/@@download/ENCFF928WRM.bed.gz mm10 released inconsistent platforms ENCFF202EDC bigBed narrowPeak replicated peaks ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1, 2 ENCFF928WRM 1302892 ENCODE Processing Pipeline b52df5c86547a68e3dc2affa285c7024 https://www.encodeproject.org/files/ENCFF202EDC/@@download/ENCFF202EDC.bigBed mm10 released inconsistent platforms ENCFF754FYS fastq reads ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 2 50 single-ended 340217421 Bing Ren, UCSD 9d19e7ea16379cd1080a1e345169a28d SRA:SRR3651240 https://www.encodeproject.org/files/ENCFF754FYS/@@download/ENCFF754FYS.fastq.gz Illumina HiSeq 2500 /files/ENCFF037ZOC/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF467NHM fastq reads ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 1 50 single-ended 2474531496 Bing Ren, UCSD 3f63916734bba6409836d155a04fcecc SRA:SRR3651242 https://www.encodeproject.org/files/ENCFF467NHM/@@download/ENCFF467NHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF580JZM/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF043EHP fastq reads ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 1 50 single-ended 1977854457 Bing Ren, UCSD 0d33b0c3bc275346532cd7e2c8955e93 SRA:SRR3651241 https://www.encodeproject.org/files/ENCFF043EHP/@@download/ENCFF043EHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF037ZOC/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF530BJI bam alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF467NHM, ENCFF806TVZ 1289136739 ENCODE Processing Pipeline 6bfa53072caa3d0d179b7766a3a8ffef https://www.encodeproject.org/files/ENCFF530BJI/@@download/ENCFF530BJI.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF089TYO bam alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF043EHP, ENCFF754FYS, ENCFF806TVZ 1340133525 ENCODE Processing Pipeline f9fc5bef43a49a3f4581e45fd693103a https://www.encodeproject.org/files/ENCFF089TYO/@@download/ENCFF089TYO.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF607GGI bed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF089TYO, ENCFF366PSQ 1054736 ENCODE Processing Pipeline dcd4424474bf6a5ffab3b7c86125d537 https://www.encodeproject.org/files/ENCFF607GGI/@@download/ENCFF607GGI.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF201WNM bed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF189CVV, ENCFF530BJI 1027799 ENCODE Processing Pipeline 13ef406bb7600bd1009ef6aed6869355 https://www.encodeproject.org/files/ENCFF201WNM/@@download/ENCFF201WNM.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF715WKK bigBed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF607GGI 2191031 ENCODE Processing Pipeline 47323e757f2c9d22700dcd86f91a6e9e https://www.encodeproject.org/files/ENCFF715WKK/@@download/ENCFF715WKK.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF382SBG bigBed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF381EUY 3374245 ENCODE Processing Pipeline 339214a4cde070b1d339c22acd6d1deb https://www.encodeproject.org/files/ENCFF382SBG/@@download/ENCFF382SBG.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF381EUY bed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF089TYO, ENCFF189CVV, ENCFF366PSQ, ENCFF530BJI 1362745 ENCODE Processing Pipeline 1e3f390ae8f43f8cd01c6bbafa7a7053 https://www.encodeproject.org/files/ENCFF381EUY/@@download/ENCFF381EUY.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF723HQB bigBed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF201WNM 2132143 ENCODE Processing Pipeline c38fd735e5bd4fe374c59f5c95da588c https://www.encodeproject.org/files/ENCFF723HQB/@@download/ENCFF723HQB.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF077AQB bigWig signal p-value ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF089TYO, ENCFF366PSQ 500764787 ENCODE Processing Pipeline 2c14ce3d13a969fec17ecf22a93f517b https://www.encodeproject.org/files/ENCFF077AQB/@@download/ENCFF077AQB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF327GJQ bigWig signal p-value ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF189CVV, ENCFF530BJI 491205966 ENCODE Processing Pipeline c4cae004775c6b0c0f8e95005308eabf https://www.encodeproject.org/files/ENCFF327GJQ/@@download/ENCFF327GJQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF724SVX bigWig signal p-value ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF089TYO, ENCFF189CVV, ENCFF366PSQ, ENCFF530BJI 848606765 ENCODE Processing Pipeline 4468a0614993b1952fb11ac9aaf93d20 https://www.encodeproject.org/files/ENCFF724SVX/@@download/ENCFF724SVX.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF579AKI bigWig fold change over control ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF089TYO, ENCFF366PSQ 491389353 ENCODE Processing Pipeline ecf6d21da4b21610acd8dfb0bc13a135 https://www.encodeproject.org/files/ENCFF579AKI/@@download/ENCFF579AKI.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF904OLD bigWig fold change over control ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF089TYO, ENCFF189CVV, ENCFF366PSQ, ENCFF530BJI 943062679 ENCODE Processing Pipeline adb4be8bb9f3a06ee4de03bb858e95a2 https://www.encodeproject.org/files/ENCFF904OLD/@@download/ENCFF904OLD.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF412EXF bigWig fold change over control ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF189CVV, ENCFF530BJI 480702909 ENCODE Processing Pipeline 6dd1648e2740cf4ea5c35bc433f77095 https://www.encodeproject.org/files/ENCFF412EXF/@@download/ENCFF412EXF.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF266YIF bed narrowPeak replicated peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF201WNM, ENCFF381EUY, ENCFF607GGI 577457 ENCODE Processing Pipeline 149eed5b9cbf5b628fe936a4916b1fca https://www.encodeproject.org/files/ENCFF266YIF/@@download/ENCFF266YIF.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF966XPS bigBed narrowPeak replicated peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF266YIF 1359285 ENCODE Processing Pipeline 714a9a18943ce24870be07881ffd23ca https://www.encodeproject.org/files/ENCFF966XPS/@@download/ENCFF966XPS.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF552CYN bam unfiltered alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF467NHM 2979160338 ENCODE Processing Pipeline bf5ded3ce38aef873f29de6a90c13f72 https://www.encodeproject.org/files/ENCFF552CYN/@@download/ENCFF552CYN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF423BBJ bam unfiltered alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF043EHP, ENCFF754FYS 2825960681 ENCODE Processing Pipeline aa90e9c2d1b8cd98cdf8f840cb2ca145 https://www.encodeproject.org/files/ENCFF423BBJ/@@download/ENCFF423BBJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF613ODH bam alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF467NHM 1288302416 ENCODE Processing Pipeline 7dc369e22240e2a0410515656de361ae https://www.encodeproject.org/files/ENCFF613ODH/@@download/ENCFF613ODH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF292IOB bam alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF043EHP, ENCFF754FYS 1339256747 ENCODE Processing Pipeline d0587d933e80a455d4a22deb36004224 https://www.encodeproject.org/files/ENCFF292IOB/@@download/ENCFF292IOB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF170YII bed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF292IOB, ENCFF613ODH, ENCFF837CRH, ENCFF956XFI 1363101 ENCODE Processing Pipeline 4ce1dd2053fb6b600743075e0cd27926 https://www.encodeproject.org/files/ENCFF170YII/@@download/ENCFF170YII.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF018OBF bigBed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF049EJU 2276805 ENCODE Processing Pipeline 1b267564f7a8407ab49684a56f47bdaa https://www.encodeproject.org/files/ENCFF018OBF/@@download/ENCFF018OBF.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF677SDR bed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF292IOB, ENCFF956XFI 1070870 ENCODE Processing Pipeline f61f197352671681623384c97f52920e https://www.encodeproject.org/files/ENCFF677SDR/@@download/ENCFF677SDR.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF507FWT bigBed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF677SDR 2247710 ENCODE Processing Pipeline 8c0f7b36536142e2c5240e278eb32625 https://www.encodeproject.org/files/ENCFF507FWT/@@download/ENCFF507FWT.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF403GXM bigBed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF170YII 3393724 ENCODE Processing Pipeline dd552e7d01686c8d7b6d9b9bc37cc043 https://www.encodeproject.org/files/ENCFF403GXM/@@download/ENCFF403GXM.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF953CJH bigWig signal p-value ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF292IOB, ENCFF956XFI 609258618 ENCODE Processing Pipeline 43daaf8747c6f2a48edb9e14a3d6d78d https://www.encodeproject.org/files/ENCFF953CJH/@@download/ENCFF953CJH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF049EJU bed narrowPeak peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF613ODH, ENCFF837CRH 1098541 ENCODE Processing Pipeline d913ede04878453e201fbb09771d22e7 https://www.encodeproject.org/files/ENCFF049EJU/@@download/ENCFF049EJU.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF022TGV bigWig signal p-value ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF292IOB, ENCFF613ODH, ENCFF837CRH, ENCFF956XFI 1129841226 ENCODE Processing Pipeline edd76c2cd1e50c462ede34393db2f41c https://www.encodeproject.org/files/ENCFF022TGV/@@download/ENCFF022TGV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF101ASP bigWig fold change over control ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF292IOB, ENCFF613ODH, ENCFF837CRH, ENCFF956XFI 1180633127 ENCODE Processing Pipeline 9968743255b898663931d9b6b2608136 https://www.encodeproject.org/files/ENCFF101ASP/@@download/ENCFF101ASP.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF458DVH bigWig signal p-value ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF613ODH, ENCFF837CRH 551447093 ENCODE Processing Pipeline 7f85a0e99020fe22b561128520bcc415 https://www.encodeproject.org/files/ENCFF458DVH/@@download/ENCFF458DVH.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF185ZFN bigWig fold change over control ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 ENCFF292IOB, ENCFF956XFI 603045737 ENCODE Processing Pipeline c05476095152b0ef471dac7aa9c50659 https://www.encodeproject.org/files/ENCFF185ZFN/@@download/ENCFF185ZFN.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF938WMG bigWig fold change over control ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 ENCFF613ODH, ENCFF837CRH 597931528 ENCODE Processing Pipeline 99749f19d72d52870362b88882fcc4a2 https://www.encodeproject.org/files/ENCFF938WMG/@@download/ENCFF938WMG.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF131ORZ bed narrowPeak replicated peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF049EJU, ENCFF170YII, ENCFF677SDR 623849 ENCODE Processing Pipeline 1949f6ee2c6285d6151947a5f73854ed https://www.encodeproject.org/files/ENCFF131ORZ/@@download/ENCFF131ORZ.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF527OGX bigBed narrowPeak replicated peaks ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1, 2 ENCFF131ORZ 1445187 ENCODE Processing Pipeline 96fa75f2b7d2b3df4730be3c6ae87f12 https://www.encodeproject.org/files/ENCFF527OGX/@@download/ENCFF527OGX.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF001KGH bam alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF001KGW 759261270 Bing Ren, UCSD edeb00518a8d37d45cba067eed33d659 https://www.encodeproject.org/files/ENCFF001KGH/@@download/ENCFF001KGH.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF001KGK bigBed broadPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001XXC 620348 Bing Ren, UCSD 7615a20f397046fd9af55e667587922c https://www.encodeproject.org/files/ENCFF001KGK/@@download/ENCFF001KGK.bigBed mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF001KGM bigWig signal ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGH, ENCFF001KGN 55522849 Bing Ren, UCSD ba5a46c78bbcd879aa13518df4b0a791 https://www.encodeproject.org/files/ENCFF001KGM/@@download/ENCFF001KGM.bigWig mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF001KGN bam alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF001KGZ 1336897105 Bing Ren, UCSD f20fd9e1503998c33e747064b822072c https://www.encodeproject.org/files/ENCFF001KGN/@@download/ENCFF001KGN.bam mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF001KGW fastq reads ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 1 36 single-ended 733733049 Bing Ren, UCSD 95b7e0f8a6b051b54bde36e940cc75d5 https://www.encodeproject.org/files/ENCFF001KGW/@@download/ENCFF001KGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIM/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF001KGZ fastq reads ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 1 50 single-ended 1351475282 Bing Ren, UCSD 2717c51e4105a46e3ae1a404ace70075 https://www.encodeproject.org/files/ENCFF001KGZ/@@download/ENCFF001KGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KIL/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, inconsistent control read length, low read length ENCFF001XXC bed broadPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF001KGH, ENCFF001KGN 383283 Bing Ren, UCSD ee500bcba87835579598b6d370ab6de2 https://www.encodeproject.org/files/ENCFF001XXC/@@download/ENCFF001XXC.bed.gz mm9 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF077OUU bam unfiltered alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGW, ENCFF018NEO 814957105 ENCODE Processing Pipeline 47f4b38366b61ad2870aec95f1e06b6c https://www.encodeproject.org/files/ENCFF077OUU/@@download/ENCFF077OUU.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF805OAP bam alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGW, ENCFF018NEO 575992194 ENCODE Processing Pipeline 72fa93e9dad59aecef4d33f3f18db14b https://www.encodeproject.org/files/ENCFF805OAP/@@download/ENCFF805OAP.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF809CCA bed narrowPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF805OAP 1208774 ENCODE Processing Pipeline edae31ffdc7a0c976b59f35fe68de409 https://www.encodeproject.org/files/ENCFF809CCA/@@download/ENCFF809CCA.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF973TTB bigBed narrowPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF809CCA 3589813 ENCODE Processing Pipeline 933441c1283952356603896a88c426fa https://www.encodeproject.org/files/ENCFF973TTB/@@download/ENCFF973TTB.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF289BOP bigWig signal p-value ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF805OAP 326882999 ENCODE Processing Pipeline b30687e30c0d224cf58df8cf0c9725a6 https://www.encodeproject.org/files/ENCFF289BOP/@@download/ENCFF289BOP.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF412RVX bigWig fold change over control ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 ENCFF262EEH, ENCFF465PJQ, ENCFF805OAP 278604990 ENCODE Processing Pipeline 1ad30ba6920fc9e387bdf447dc0046cc https://www.encodeproject.org/files/ENCFF412RVX/@@download/ENCFF412RVX.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF114SJF bam unfiltered alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGZ, ENCFF018NEO 1149878160 ENCODE Processing Pipeline 5d946e8dee52d92c37dd3ed9e07a0972 https://www.encodeproject.org/files/ENCFF114SJF/@@download/ENCFF114SJF.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF025LWX bam alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGZ, ENCFF018NEO 827375705 ENCODE Processing Pipeline 34b6356b00e527153bb2dbf06bd8e0f1 https://www.encodeproject.org/files/ENCFF025LWX/@@download/ENCFF025LWX.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF946KHW bed narrowPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF025LWX, ENCFF262EEH, ENCFF465PJQ 947310 ENCODE Processing Pipeline e9d772b80f38ca1dbd5684a12a9b4154 https://www.encodeproject.org/files/ENCFF946KHW/@@download/ENCFF946KHW.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF805VLM bed narrowPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF025LWX, ENCFF262EEH, ENCFF465PJQ, ENCFF805OAP 928351 ENCODE Processing Pipeline f8d90932e9f1cee894a78498fff2ed92 https://www.encodeproject.org/files/ENCFF805VLM/@@download/ENCFF805VLM.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF307YPW bigBed narrowPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF946KHW 2750031 ENCODE Processing Pipeline e67ba3d6517b45e2c3c132cfd7fc4497 https://www.encodeproject.org/files/ENCFF307YPW/@@download/ENCFF307YPW.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF963AVR bigBed narrowPeak peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF805VLM 2663092 ENCODE Processing Pipeline 56676aaa798bd478a1c3c7fbfa3c9f54 https://www.encodeproject.org/files/ENCFF963AVR/@@download/ENCFF963AVR.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF075XCY bigWig signal p-value ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF025LWX, ENCFF262EEH, ENCFF465PJQ 379386625 ENCODE Processing Pipeline 908001fee8620d7a626f546a2c9b583a https://www.encodeproject.org/files/ENCFF075XCY/@@download/ENCFF075XCY.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF811OMM bigWig signal p-value ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF025LWX, ENCFF262EEH, ENCFF465PJQ, ENCFF805OAP 391067459 ENCODE Processing Pipeline 7a607be489e6808a5131f6a4204e905c https://www.encodeproject.org/files/ENCFF811OMM/@@download/ENCFF811OMM.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF290YSI bigWig fold change over control ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 ENCFF025LWX, ENCFF262EEH, ENCFF465PJQ 356274186 ENCODE Processing Pipeline 4195d8384233367a8c17c27a12b3afe6 https://www.encodeproject.org/files/ENCFF290YSI/@@download/ENCFF290YSI.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF454UOO bed narrowPeak replicated peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF805VLM, ENCFF809CCA, ENCFF946KHW 1174669 ENCODE Processing Pipeline 4185378c2e63ba1f27b86b528e472447 https://www.encodeproject.org/files/ENCFF454UOO/@@download/ENCFF454UOO.bed.gz mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF586DXK bigBed narrowPeak replicated peaks ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF454UOO 2477401 ENCODE Processing Pipeline 37e1252a89cc51d0b9f537ce85826ea8 https://www.encodeproject.org/files/ENCFF586DXK/@@download/ENCFF586DXK.bigBed mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF421ODL bigWig fold change over control ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1, 2 ENCFF025LWX, ENCFF262EEH, ENCFF465PJQ, ENCFF805OAP 511741219 ENCODE Processing Pipeline 1557353a426f37d7e97144a8e0df60d5 https://www.encodeproject.org/files/ENCFF421ODL/@@download/ENCFF421ODL.bigWig mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF001KBI bam alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF001KBU 1183348146 Bing Ren, UCSD d50dcc32f940641c74cfd4216f6849fd https://www.encodeproject.org/files/ENCFF001KBI/@@download/ENCFF001KBI.bam mm9 archived moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KBJ bigBed broadPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE ENCFF001XWJ 1276064 Bing Ren, UCSD e4d880e6542e742a29d54182715515ca https://www.encodeproject.org/files/ENCFF001KBJ/@@download/ENCFF001KBJ.bigBed mm9 archived moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KBK bam alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF001KBV 1165723902 Bing Ren, UCSD eaf2bfcbac8335376483c6087e6f5c20 https://www.encodeproject.org/files/ENCFF001KBK/@@download/ENCFF001KBK.bam mm9 archived moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KBM bigWig signal ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 52910689 Bing Ren, UCSD 85bb9a55bf71061013c11290690dfbd8 https://www.encodeproject.org/files/ENCFF001KBM/@@download/ENCFF001KBM.bigWig mm9 archived moderate library complexity, mild to moderate bottlenecking missing derived_from insufficient read depth, control insufficient read depth ENCFF001KBU fastq reads ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 1 50 single-ended 1159179777 Bing Ren, UCSD 528da2a5bba42c23fb6bfec095266cec https://www.encodeproject.org/files/ENCFF001KBU/@@download/ENCFF001KBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCH/ released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001KBV fastq reads ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 1 50 single-ended 1171214697 Bing Ren, UCSD e86c1c06948a1244d8590ef71e9e97ed https://www.encodeproject.org/files/ENCFF001KBV/@@download/ENCFF001KBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001KCI/ released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF001XWJ bed broadPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 924098 Bing Ren, UCSD e505f13529be9b21d9aa4a67a349bfc6 https://www.encodeproject.org/files/ENCFF001XWJ/@@download/ENCFF001XWJ.bed.gz mm9 archived moderate library complexity, mild to moderate bottlenecking missing derived_from insufficient read depth, control insufficient read depth ENCFF707HBM bam unfiltered alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KBU, ENCFF018NEO 1238168157 ENCODE Processing Pipeline 7fa707f558ac5457b3bbae9d3d43f635 https://www.encodeproject.org/files/ENCFF707HBM/@@download/ENCFF707HBM.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF960QYL bam alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KBU, ENCFF018NEO 865803875 ENCODE Processing Pipeline 1716ca7da2b138934844dee16b9ee7ea https://www.encodeproject.org/files/ENCFF960QYL/@@download/ENCFF960QYL.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF352XZX bam unfiltered alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBV, ENCFF018NEO 1208087327 ENCODE Processing Pipeline 2582b850b17300d0adda5f4d6e60710d https://www.encodeproject.org/files/ENCFF352XZX/@@download/ENCFF352XZX.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF941YPQ bam alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBV, ENCFF018NEO 712492498 ENCODE Processing Pipeline 70b983697b5bef5216ce928bbf849ae9 https://www.encodeproject.org/files/ENCFF941YPQ/@@download/ENCFF941YPQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF678KYP bed narrowPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF960QYL 3138376 ENCODE Processing Pipeline 5bb161c7fc2d1af8ccdab6d66ce61d14 https://www.encodeproject.org/files/ENCFF678KYP/@@download/ENCFF678KYP.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF545GRQ bed narrowPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF941YPQ 2876184 ENCODE Processing Pipeline d1ec50b23330dd930f317e5949807bc6 https://www.encodeproject.org/files/ENCFF545GRQ/@@download/ENCFF545GRQ.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF374IQL bed narrowPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF941YPQ, ENCFF960QYL 3359884 ENCODE Processing Pipeline 12e0ed5c7a5fb1f7f10679dab55e5ce4 https://www.encodeproject.org/files/ENCFF374IQL/@@download/ENCFF374IQL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF838DQX bigBed narrowPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF678KYP 7575875 ENCODE Processing Pipeline 1ec37987160c5fa3395b515e17b1d971 https://www.encodeproject.org/files/ENCFF838DQX/@@download/ENCFF838DQX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF331ENU bigBed narrowPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF545GRQ 6538627 ENCODE Processing Pipeline b1324c81bc3ec81ea29295e0246e4016 https://www.encodeproject.org/files/ENCFF331ENU/@@download/ENCFF331ENU.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF986OUI bigBed narrowPeak peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF374IQL 7643419 ENCODE Processing Pipeline ec59fa7a6bc4165bb4e05583f973a522 https://www.encodeproject.org/files/ENCFF986OUI/@@download/ENCFF986OUI.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF724BBK bigWig signal p-value ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF960QYL 325156780 ENCODE Processing Pipeline dea75808287a87c4ee102ddd22110697 https://www.encodeproject.org/files/ENCFF724BBK/@@download/ENCFF724BBK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF585ENI bigWig signal p-value ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF941YPQ 284086369 ENCODE Processing Pipeline c8576a6b319a8350f33731b81db71f6c https://www.encodeproject.org/files/ENCFF585ENI/@@download/ENCFF585ENI.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF265QHU bigWig signal p-value ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF941YPQ, ENCFF960QYL 634867822 ENCODE Processing Pipeline d7374c8c8689799b05c3664f4bb78840 https://www.encodeproject.org/files/ENCFF265QHU/@@download/ENCFF265QHU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF700XWH bigWig fold change over control ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 ENCFF089REQ, ENCFF960QYL 286155871 ENCODE Processing Pipeline 7a3614c24dca6e6c15d7df79f5e093ea https://www.encodeproject.org/files/ENCFF700XWH/@@download/ENCFF700XWH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF530GOK bigWig fold change over control ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 ENCFF017WTH, ENCFF941YPQ 234020046 ENCODE Processing Pipeline db641bfb6763cc56dd67f3804a9f32bd https://www.encodeproject.org/files/ENCFF530GOK/@@download/ENCFF530GOK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF863PEU bigWig fold change over control ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF017WTH, ENCFF089REQ, ENCFF941YPQ, ENCFF960QYL 563823207 ENCODE Processing Pipeline 4f4af65db28b342a6a29e776132e8c92 https://www.encodeproject.org/files/ENCFF863PEU/@@download/ENCFF863PEU.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF782WYA bed narrowPeak replicated peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF374IQL, ENCFF545GRQ, ENCFF678KYP 3225068 ENCODE Processing Pipeline 0420d18e20edb1500c67ad3a6b70dee6 https://www.encodeproject.org/files/ENCFF782WYA/@@download/ENCFF782WYA.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF235CCS bigBed narrowPeak replicated peaks ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1, 2 ENCFF782WYA 5412729 ENCODE Processing Pipeline f851f0e02f1d9961d21e6b7e6a4228ea https://www.encodeproject.org/files/ENCFF235CCS/@@download/ENCFF235CCS.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF002ESL fastq reads ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 756701294 Bing Ren, UCSD 73e75c3c4dccd2362e51c86db2615e15 SRA:SRR3653080 https://www.encodeproject.org/files/ENCFF002ESL/@@download/ENCFF002ESL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXR/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ESO fastq reads ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 630957789 Bing Ren, UCSD 2e93fd276d08f972c5f948f2521acbfa SRA:SRR3653078 https://www.encodeproject.org/files/ENCFF002ESO/@@download/ENCFF002ESO.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXT/ released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF900YLV fastq reads ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 2 50 single-ended 988372741 Bing Ren, UCSD 97316638795b105840598a1d7daa2530 SRA:SRR3653081 https://www.encodeproject.org/files/ENCFF900YLV/@@download/ENCFF900YLV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXR/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF083MCG fastq reads ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 2 50 single-ended 1199015160 Bing Ren, UCSD adf5b26384c0f030b498725b8fe2d9d2 SRA:SRR3653079 https://www.encodeproject.org/files/ENCFF083MCG/@@download/ENCFF083MCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BXT/ released low read length, control low read depth, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF776ZBV bam alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ESO, ENCFF083MCG, ENCFF806TVZ 1738124325 ENCODE Processing Pipeline 9973b570c4a9acc484b897a39e3ce56b https://www.encodeproject.org/files/ENCFF776ZBV/@@download/ENCFF776ZBV.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF727XUT bam alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ESL, ENCFF806TVZ, ENCFF900YLV 1649194991 ENCODE Processing Pipeline a7cbcf2427f1ecb822a2b473135cb7ec https://www.encodeproject.org/files/ENCFF727XUT/@@download/ENCFF727XUT.bam mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF143SFF bed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF720BSQ, ENCFF727XUT 2339082 ENCODE Processing Pipeline f962383bd2b4be38736ef14510b54ee9 https://www.encodeproject.org/files/ENCFF143SFF/@@download/ENCFF143SFF.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF630CYO bed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF776ZBV 2876312 ENCODE Processing Pipeline 6ccd39dd4ca858638a91bc2c9a4b2b3e https://www.encodeproject.org/files/ENCFF630CYO/@@download/ENCFF630CYO.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF072QBG bed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF727XUT, ENCFF776ZBV 2285283 ENCODE Processing Pipeline 8290b24569562714129da812b283bb86 https://www.encodeproject.org/files/ENCFF072QBG/@@download/ENCFF072QBG.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF133DUE bigBed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF630CYO 7986945 ENCODE Processing Pipeline a62e1782473a753df500f7fcefbd7ede https://www.encodeproject.org/files/ENCFF133DUE/@@download/ENCFF133DUE.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF091HPF bigBed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF072QBG 6350862 ENCODE Processing Pipeline 68e1fd51543680445002fb1b0633278d https://www.encodeproject.org/files/ENCFF091HPF/@@download/ENCFF091HPF.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF756BSF bigWig signal p-value ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF720BSQ, ENCFF727XUT 783830673 ENCODE Processing Pipeline 455d1b0d38c7bc583ec1048647a09925 https://www.encodeproject.org/files/ENCFF756BSF/@@download/ENCFF756BSF.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF411TJA bigBed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF143SFF 5191465 ENCODE Processing Pipeline a5d5ef95159fc0a76b438b7fa4bb563d https://www.encodeproject.org/files/ENCFF411TJA/@@download/ENCFF411TJA.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF318OUF bigWig signal p-value ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF776ZBV 681073301 ENCODE Processing Pipeline d0364b325109d2e90b21601ac647f36f https://www.encodeproject.org/files/ENCFF318OUF/@@download/ENCFF318OUF.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF888HHX bigWig signal p-value ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF727XUT, ENCFF776ZBV 867367811 ENCODE Processing Pipeline d5dd4643de78ade37492a353c77c9c60 https://www.encodeproject.org/files/ENCFF888HHX/@@download/ENCFF888HHX.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF780ADG bigWig fold change over control ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF461NAJ, ENCFF720BSQ, ENCFF727XUT 739401754 ENCODE Processing Pipeline fb8968ee07de3d4fda9bc38763e562ca https://www.encodeproject.org/files/ENCFF780ADG/@@download/ENCFF780ADG.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF590AID bigWig fold change over control ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF776ZBV 758440609 ENCODE Processing Pipeline 1888621de8e557a27e315cfd5f241810 https://www.encodeproject.org/files/ENCFF590AID/@@download/ENCFF590AID.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF165VPQ bed narrowPeak replicated peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF072QBG, ENCFF143SFF, ENCFF630CYO 2257667 ENCODE Processing Pipeline 929e73848f36a657c36ff3d9df4f36fb https://www.encodeproject.org/files/ENCFF165VPQ/@@download/ENCFF165VPQ.bed.gz mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF600GMJ bigBed narrowPeak replicated peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF165VPQ 4939586 ENCODE Processing Pipeline 45a58156bc3dd571b87c885098626429 https://www.encodeproject.org/files/ENCFF600GMJ/@@download/ENCFF600GMJ.bigBed mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF046QDK bigWig fold change over control ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF461NAJ, ENCFF720BSQ, ENCFF727XUT, ENCFF776ZBV 1120097762 ENCODE Processing Pipeline 76b48967bfa9ddfd2184014cc79d5ea7 https://www.encodeproject.org/files/ENCFF046QDK/@@download/ENCFF046QDK.bigWig mm10-minimal archived low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF535PXT bam unfiltered alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESL, ENCFF018NEO, ENCFF900YLV 1985159112 ENCODE Processing Pipeline aacc46b6f663e719f67cb3e8acf8fda5 https://www.encodeproject.org/files/ENCFF535PXT/@@download/ENCFF535PXT.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF147LMK bam unfiltered alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESO, ENCFF018NEO, ENCFF083MCG 2025662451 ENCODE Processing Pipeline 554367badee6844d356c45b69414b80e https://www.encodeproject.org/files/ENCFF147LMK/@@download/ENCFF147LMK.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF988ECO bam alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESL, ENCFF018NEO, ENCFF900YLV 1414952627 ENCODE Processing Pipeline ab95e0355bed2d3744411305d2f2e47a https://www.encodeproject.org/files/ENCFF988ECO/@@download/ENCFF988ECO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF013TON bam alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESO, ENCFF018NEO, ENCFF083MCG 1461932127 ENCODE Processing Pipeline 5ec74c2bba0be771eab9a59f8e7676fd https://www.encodeproject.org/files/ENCFF013TON/@@download/ENCFF013TON.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF599CUZ bed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF631VBQ, ENCFF988ECO 2326588 ENCODE Processing Pipeline 77f6ffa5f9ad96a4965b045114d55d4a https://www.encodeproject.org/files/ENCFF599CUZ/@@download/ENCFF599CUZ.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF665UII bed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF013TON, ENCFF631VBQ 1744498 ENCODE Processing Pipeline 6df3710d304203a9b18fff317753a40d https://www.encodeproject.org/files/ENCFF665UII/@@download/ENCFF665UII.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF263WFM bed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF013TON, ENCFF568KLX, ENCFF631VBQ, ENCFF988ECO 2238995 ENCODE Processing Pipeline ad3b5fe993b975dd3c63ab3899f2301b https://www.encodeproject.org/files/ENCFF263WFM/@@download/ENCFF263WFM.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF507SRG bigBed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF599CUZ 6577260 ENCODE Processing Pipeline 4413fa3f154d32166cae81dbfea25d05 https://www.encodeproject.org/files/ENCFF507SRG/@@download/ENCFF507SRG.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF420PDJ bigBed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF665UII 3960605 ENCODE Processing Pipeline 02d27660507a44f0225d0d1cdd016e11 https://www.encodeproject.org/files/ENCFF420PDJ/@@download/ENCFF420PDJ.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF366WHU bigBed narrowPeak peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF263WFM 6246579 ENCODE Processing Pipeline 61dfa295b3d338af56a2ec8779766ef6 https://www.encodeproject.org/files/ENCFF366WHU/@@download/ENCFF366WHU.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF903SLI bigWig signal p-value ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF631VBQ, ENCFF988ECO 743737386 ENCODE Processing Pipeline 14b9210d50c78dbdabe43e58465ea09b https://www.encodeproject.org/files/ENCFF903SLI/@@download/ENCFF903SLI.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF903GFX bigWig signal p-value ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF013TON, ENCFF631VBQ 475485161 ENCODE Processing Pipeline 1665ef67112a29f8f97f2192e898d44c https://www.encodeproject.org/files/ENCFF903GFX/@@download/ENCFF903GFX.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF339AGG bigWig signal p-value ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF013TON, ENCFF568KLX, ENCFF631VBQ, ENCFF988ECO 865279078 ENCODE Processing Pipeline 43d3081b8a78a762340a0b424ba29197 https://www.encodeproject.org/files/ENCFF339AGG/@@download/ENCFF339AGG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF636HVG bigWig fold change over control ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF568KLX, ENCFF631VBQ, ENCFF988ECO 733338921 ENCODE Processing Pipeline bc18f42529efe4546819db3b5187ba74 https://www.encodeproject.org/files/ENCFF636HVG/@@download/ENCFF636HVG.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF527VPB bigWig fold change over control ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF013TON, ENCFF631VBQ 577708801 ENCODE Processing Pipeline 7a693a57773d72da74926362927019b0 https://www.encodeproject.org/files/ENCFF527VPB/@@download/ENCFF527VPB.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF702GVB bigWig fold change over control ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF013TON, ENCFF568KLX, ENCFF631VBQ, ENCFF988ECO 1112441958 ENCODE Processing Pipeline 2ac1b2397e994dc2f4914ed1c8095b22 https://www.encodeproject.org/files/ENCFF702GVB/@@download/ENCFF702GVB.bigWig mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF992ONF bed narrowPeak replicated peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF263WFM, ENCFF599CUZ, ENCFF665UII 2072629 ENCODE Processing Pipeline c0f5cbd3c35be47f48e9b41b1e591d5a https://www.encodeproject.org/files/ENCFF992ONF/@@download/ENCFF992ONF.bed.gz mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF662UNG bigBed narrowPeak replicated peaks ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF992ONF 4563262 ENCODE Processing Pipeline e21c6316144fc8e1e8051df6e1e94502 https://www.encodeproject.org/files/ENCFF662UNG/@@download/ENCFF662UNG.bigBed mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF002ETL fastq reads ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 1 36 single-ended 900372438 Bing Ren, UCSD c4e509826920a51e011645d152005e8a SRA:SRR3651519 https://www.encodeproject.org/files/ENCFF002ETL/@@download/ENCFF002ETL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BXY/ released low read length, control low read depth, low read depth ENCFF002ETN fastq reads ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 1 36 single-ended 979226675 Bing Ren, UCSD cd49bbcf98aa7cd31e1bc440a943b291 SRA:SRR3651518 https://www.encodeproject.org/files/ENCFF002ETN/@@download/ENCFF002ETN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BYA/ released low read length, control low read depth, low read depth ENCFF846BNH bam alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF002ETL, ENCFF806TVZ 697131004 ENCODE Processing Pipeline 43e56a053ff2ff0b8310d770383a448a https://www.encodeproject.org/files/ENCFF846BNH/@@download/ENCFF846BNH.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF053PLH bam alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF002ETN, ENCFF806TVZ 763702802 ENCODE Processing Pipeline 775834a1b7147e736028cd55ac10b728 https://www.encodeproject.org/files/ENCFF053PLH/@@download/ENCFF053PLH.bam mm10-minimal archived low read length, control low read depth, low read depth ENCFF162IRO bed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF846BNH 930029 ENCODE Processing Pipeline 8baf8943f1de2d27efa2e273fd72ba8a https://www.encodeproject.org/files/ENCFF162IRO/@@download/ENCFF162IRO.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF408FMO bed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF053PLH, ENCFF098KIR, ENCFF846BNH 967813 ENCODE Processing Pipeline 547b28db11f9dada079e9118b5936fd5 https://www.encodeproject.org/files/ENCFF408FMO/@@download/ENCFF408FMO.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF456NQU bigBed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF440AYP 3181819 ENCODE Processing Pipeline fe368d39b9ae3174f8ae438a25386b45 https://www.encodeproject.org/files/ENCFF456NQU/@@download/ENCFF456NQU.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF440AYP bed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF053PLH, ENCFF098KIR 1025533 ENCODE Processing Pipeline ccab987795597d51bd1233710a484b9a https://www.encodeproject.org/files/ENCFF440AYP/@@download/ENCFF440AYP.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF266VGB bigBed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF162IRO 2923098 ENCODE Processing Pipeline 762b7ff03c92f96fdb584ab61a34d191 https://www.encodeproject.org/files/ENCFF266VGB/@@download/ENCFF266VGB.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF043NGB bigBed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF408FMO 2998297 ENCODE Processing Pipeline f368de0dec268d5fd2ac721d5558b0a2 https://www.encodeproject.org/files/ENCFF043NGB/@@download/ENCFF043NGB.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF047GYJ bigWig signal p-value ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF053PLH, ENCFF098KIR 355760297 ENCODE Processing Pipeline d8bcab1417d1179ec81893130bdf4fa0 https://www.encodeproject.org/files/ENCFF047GYJ/@@download/ENCFF047GYJ.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF654NVV bigWig fold change over control ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF846BNH 330316404 ENCODE Processing Pipeline a86fa9d49a7fbab2fc06e2dcc7dbff23 https://www.encodeproject.org/files/ENCFF654NVV/@@download/ENCFF654NVV.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF864YJY bigWig signal p-value ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF012JCC, ENCFF098KIR, ENCFF846BNH 389009512 ENCODE Processing Pipeline dcd6f9438087194aad239f00d244078d https://www.encodeproject.org/files/ENCFF864YJY/@@download/ENCFF864YJY.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF314DCV bigWig signal p-value ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF053PLH, ENCFF098KIR, ENCFF846BNH 521747192 ENCODE Processing Pipeline 41986fe1bdeaeb1debd52c36658978c0 https://www.encodeproject.org/files/ENCFF314DCV/@@download/ENCFF314DCV.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF182XXK bigWig fold change over control ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF012JCC, ENCFF053PLH, ENCFF098KIR 343679867 ENCODE Processing Pipeline c4fbcf524212214927fd794d4540429f https://www.encodeproject.org/files/ENCFF182XXK/@@download/ENCFF182XXK.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF180HZX bed narrowPeak replicated peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF162IRO, ENCFF408FMO, ENCFF440AYP 1173783 ENCODE Processing Pipeline e7b8f64b6adc0d33351b6ce19c87f715 https://www.encodeproject.org/files/ENCFF180HZX/@@download/ENCFF180HZX.bed.gz mm10-minimal archived low read length, control low read depth, low read depth ENCFF148XOW bigWig fold change over control ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF012JCC, ENCFF053PLH, ENCFF098KIR, ENCFF846BNH 546849765 ENCODE Processing Pipeline 7887f579d3ce28ee9146ed7a2d52016f https://www.encodeproject.org/files/ENCFF148XOW/@@download/ENCFF148XOW.bigWig mm10-minimal archived low read length, control low read depth, low read depth ENCFF168PQH bigBed narrowPeak replicated peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF180HZX 2605019 ENCODE Processing Pipeline 91c9ffa7c8eeb3e75493c383310101b2 https://www.encodeproject.org/files/ENCFF168PQH/@@download/ENCFF168PQH.bigBed mm10-minimal archived low read length, control low read depth, low read depth ENCFF365XDI bam unfiltered alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETL, ENCFF018NEO 1092963325 ENCODE Processing Pipeline faf4cbc8ef2f71e48f6bccbacb8a491c https://www.encodeproject.org/files/ENCFF365XDI/@@download/ENCFF365XDI.bam mm10 released low read length, control low read depth, low read depth ENCFF011OYW bam unfiltered alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETN, ENCFF018NEO 1165881729 ENCODE Processing Pipeline b26e70064dceba16fca2c9ded25a2115 https://www.encodeproject.org/files/ENCFF011OYW/@@download/ENCFF011OYW.bam mm10 released low read length, control low read depth, low read depth ENCFF020ZBU bam alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETL, ENCFF018NEO 697026193 ENCODE Processing Pipeline 470d7ac36f521edaeacf8656418f5ae6 https://www.encodeproject.org/files/ENCFF020ZBU/@@download/ENCFF020ZBU.bam mm10 released low read length, control low read depth, low read depth ENCFF082NQA bam alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETN, ENCFF018NEO 763593571 ENCODE Processing Pipeline 8c6805590dbbba5714608b9082b349ab https://www.encodeproject.org/files/ENCFF082NQA/@@download/ENCFF082NQA.bam mm10 released low read length, control low read depth, low read depth ENCFF572WCD bed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF020ZBU, ENCFF855ISH 830735 ENCODE Processing Pipeline 32ecd7d2d4316a78e123092296141489 https://www.encodeproject.org/files/ENCFF572WCD/@@download/ENCFF572WCD.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF087BUK bed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF082NQA, ENCFF855ISH 1026163 ENCODE Processing Pipeline ffa122a5fb25ad5cdbfd78c8393deb57 https://www.encodeproject.org/files/ENCFF087BUK/@@download/ENCFF087BUK.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF374TBE bigBed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF087BUK 3182615 ENCODE Processing Pipeline d871b0652e31a64f0c6b3f5c3131f02a https://www.encodeproject.org/files/ENCFF374TBE/@@download/ENCFF374TBE.bigBed mm10 released low read length, control low read depth, low read depth ENCFF162LMQ bed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF020ZBU, ENCFF082NQA, ENCFF855ISH 968707 ENCODE Processing Pipeline e1bfcdd3b3ceda712dd840f2b26b97e1 https://www.encodeproject.org/files/ENCFF162LMQ/@@download/ENCFF162LMQ.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF833QXG bigBed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF572WCD 2639734 ENCODE Processing Pipeline 1ff05a1f5d8d665cb5b7c12e3bb38783 https://www.encodeproject.org/files/ENCFF833QXG/@@download/ENCFF833QXG.bigBed mm10 released low read length, control low read depth, low read depth ENCFF688SYY bigBed narrowPeak peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF162LMQ 3000348 ENCODE Processing Pipeline 52a555e240367060bd048f187ba000b7 https://www.encodeproject.org/files/ENCFF688SYY/@@download/ENCFF688SYY.bigBed mm10 released low read length, control low read depth, low read depth ENCFF096IXR bigWig signal p-value ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF082NQA, ENCFF855ISH 395081095 ENCODE Processing Pipeline 6f661bbc293adca8289a5f1cc136a697 https://www.encodeproject.org/files/ENCFF096IXR/@@download/ENCFF096IXR.bigWig mm10 released low read length, control low read depth, low read depth ENCFF388JBC bigWig signal p-value ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF020ZBU, ENCFF855ISH 266585635 ENCODE Processing Pipeline 0ea4288903c40710f14d811ca34680d9 https://www.encodeproject.org/files/ENCFF388JBC/@@download/ENCFF388JBC.bigWig mm10 released low read length, control low read depth, low read depth ENCFF947KLJ bigWig signal p-value ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF020ZBU, ENCFF082NQA, ENCFF855ISH 521713663 ENCODE Processing Pipeline b49091b7f6f3c0db3656fbc0219e9776 https://www.encodeproject.org/files/ENCFF947KLJ/@@download/ENCFF947KLJ.bigWig mm10 released low read length, control low read depth, low read depth ENCFF633CLK bigWig fold change over control ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 ENCFF020ZBU, ENCFF855ISH 254710534 ENCODE Processing Pipeline e8bb5510c6255bc85172a1cdbb6c5992 https://www.encodeproject.org/files/ENCFF633CLK/@@download/ENCFF633CLK.bigWig mm10 released low read length, control low read depth, low read depth ENCFF718QPN bigWig fold change over control ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 ENCFF018HYW, ENCFF082NQA, ENCFF855ISH 342834102 ENCODE Processing Pipeline 7b0976b55e2c8ec51c2afb5e0e398a0c https://www.encodeproject.org/files/ENCFF718QPN/@@download/ENCFF718QPN.bigWig mm10 released low read length, control low read depth, low read depth ENCFF957GWA bigWig fold change over control ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF018HYW, ENCFF020ZBU, ENCFF082NQA, ENCFF855ISH 546820319 ENCODE Processing Pipeline 4cc6485115a1862bd810632a746fa540 https://www.encodeproject.org/files/ENCFF957GWA/@@download/ENCFF957GWA.bigWig mm10 released low read length, control low read depth, low read depth ENCFF593MNH bed narrowPeak replicated peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF087BUK, ENCFF162LMQ, ENCFF572WCD 1152720 ENCODE Processing Pipeline b67cc104bd708eb0122cf1d455e987e6 https://www.encodeproject.org/files/ENCFF593MNH/@@download/ENCFF593MNH.bed.gz mm10 released low read length, control low read depth, low read depth ENCFF901UZZ bigBed narrowPeak replicated peaks ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1, 2 ENCFF593MNH 2564065 ENCODE Processing Pipeline 3d6b132948aba436b686c4215e412c3c https://www.encodeproject.org/files/ENCFF901UZZ/@@download/ENCFF901UZZ.bigBed mm10 released low read length, control low read depth, low read depth ENCFF001NHF bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NHI 537002367 Michael Snyder, Stanford fd3e0f95ee0d0504c3a6ca9d81503983 https://www.encodeproject.org/files/ENCFF001NHF/@@download/ENCFF001NHF.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NHG bigBed narrowPeak peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIA 767082 Michael Snyder, Stanford 0884d4eede6d9e98c3187117d5f28909 https://www.encodeproject.org/files/ENCFF001NHG/@@download/ENCFF001NHG.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NHH bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NHK 527852059 Michael Snyder, Stanford 2e79f064ea40379344db0f602d15b067 https://www.encodeproject.org/files/ENCFF001NHH/@@download/ENCFF001NHH.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NHI fastq reads ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 1053336778 Michael Snyder, Stanford 3863d0399302d94f8d2c9619d7fe6891 https://www.encodeproject.org/files/ENCFF001NHI/@@download/ENCFF001NHI.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NHK fastq reads ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1052341181 Michael Snyder, Stanford 38f155522e83813bd635214cd1c2d0b8 https://www.encodeproject.org/files/ENCFF001NHK/@@download/ENCFF001NHK.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NHN bigWig signal ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NHF, ENCFF001NHH 224465008 Michael Snyder, Stanford 54d05de3ed3176dc831ecd936c218d6f https://www.encodeproject.org/files/ENCFF001NHN/@@download/ENCFF001NHN.bigWig mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001YIA bed narrowPeak peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NHF, ENCFF001NHH 297641 Michael Snyder, Stanford 61d1b42f3075c6fb23566f01642cc6ad https://www.encodeproject.org/files/ENCFF001YIA/@@download/ENCFF001YIA.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF993WLO bam unfiltered alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHK, ENCFF018NEO 1106589761 ENCODE Processing Pipeline db4d81899ac507a3d9c63b4147718e67 https://www.encodeproject.org/files/ENCFF993WLO/@@download/ENCFF993WLO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF149RJR bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHK, ENCFF018NEO 733180981 ENCODE Processing Pipeline c1c2bde27e1aabac1bf232c5368f927a https://www.encodeproject.org/files/ENCFF149RJR/@@download/ENCFF149RJR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF110TNT bam unfiltered alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NHI, ENCFF018NEO 1097543956 ENCODE Processing Pipeline f1c5b9a2d6f476d03edc53ff99a1fc70 https://www.encodeproject.org/files/ENCFF110TNT/@@download/ENCFF110TNT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF770XWC bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NHI, ENCFF018NEO 725490839 ENCODE Processing Pipeline 17b6d1456ba76173f77936e8d66b8805 https://www.encodeproject.org/files/ENCFF770XWC/@@download/ENCFF770XWC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF812PZT bigWig signal p-value ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF149RJR, ENCFF339ZWC 237884107 ENCODE Processing Pipeline 8d0ee30d3c2522dc80672e86579e95fe https://www.encodeproject.org/files/ENCFF812PZT/@@download/ENCFF812PZT.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF104CZP bigWig signal p-value ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF770XWC 239144636 ENCODE Processing Pipeline 2e1116fe474dec7baa6603a7353af211 https://www.encodeproject.org/files/ENCFF104CZP/@@download/ENCFF104CZP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF578ROY bigWig signal p-value ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF149RJR, ENCFF339ZWC, ENCFF770XWC 222850652 ENCODE Processing Pipeline d3d271afa023d2b73381e6825773fe54 https://www.encodeproject.org/files/ENCFF578ROY/@@download/ENCFF578ROY.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF446RRZ bigWig fold change over control ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF770XWC 298954886 ENCODE Processing Pipeline 1417bba49228d8a09643b217dcc84e20 https://www.encodeproject.org/files/ENCFF446RRZ/@@download/ENCFF446RRZ.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF253RRP bigWig fold change over control ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF149RJR, ENCFF339ZWC 286161740 ENCODE Processing Pipeline 29faa482185b9ce235d38ff30800ebd2 https://www.encodeproject.org/files/ENCFF253RRP/@@download/ENCFF253RRP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF984NJU bed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF149RJR, ENCFF339ZWC 4288212 ENCODE Processing Pipeline 368d71205f05d8058bb9b63f87f9ef22 https://www.encodeproject.org/files/ENCFF984NJU/@@download/ENCFF984NJU.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF388WVI bed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF339ZWC, ENCFF770XWC 5362530 ENCODE Processing Pipeline a1104738b9ef965f052823f4355523d6 https://www.encodeproject.org/files/ENCFF388WVI/@@download/ENCFF388WVI.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF781WYP bigWig fold change over control ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF149RJR, ENCFF339ZWC, ENCFF770XWC 503055799 ENCODE Processing Pipeline c78d3d6b8a977b2492bcea21a590758a https://www.encodeproject.org/files/ENCFF781WYP/@@download/ENCFF781WYP.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF205TLF bigBed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF388WVI 12854896 ENCODE Processing Pipeline 450198b3c89973ad58733fd89f290c45 https://www.encodeproject.org/files/ENCFF205TLF/@@download/ENCFF205TLF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF710VPX bed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF149RJR, ENCFF339ZWC, ENCFF770XWC 6008726 ENCODE Processing Pipeline ab362a76dd5ab456ad54c0f621f58371 https://www.encodeproject.org/files/ENCFF710VPX/@@download/ENCFF710VPX.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF195FEB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF072JMS 817321 ENCODE Processing Pipeline 752e7ba096be847354a8c436f38e7f70 https://www.encodeproject.org/files/ENCFF195FEB/@@download/ENCFF195FEB.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF434CIF bigBed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF984NJU 10142313 ENCODE Processing Pipeline 3c38213e4697ac5b8ecd4472632c2995 https://www.encodeproject.org/files/ENCFF434CIF/@@download/ENCFF434CIF.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF072JMS bed narrowPeak optimal idr thresholded peaks ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF388WVI, ENCFF547MET, ENCFF710VPX, ENCFF984NJU 401037 ENCODE Processing Pipeline a49088963d6e8e4c4e243c445c63e8fc https://www.encodeproject.org/files/ENCFF072JMS/@@download/ENCFF072JMS.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF441EKK bigBed narrowPeak peaks and background as input for IDR ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF710VPX 12932322 ENCODE Processing Pipeline fe82285b5a72aba2d44947aaaa261c61 https://www.encodeproject.org/files/ENCFF441EKK/@@download/ENCFF441EKK.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF002AGW fastq reads ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1019424143 Bing Ren, UCSD 2c77dc1c4e579f36e5f1216bb0daa4a9 SRA:SRR3651829 https://www.encodeproject.org/files/ENCFF002AGW/@@download/ENCFF002AGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQT/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AHC fastq reads ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 1 36 single-ended 1396087741 Bing Ren, UCSD 159192fb3ad570b36f00d39759ee4681 SRA:SRR3651828 https://www.encodeproject.org/files/ENCFF002AHC/@@download/ENCFF002AHC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQX/ released low read length, inconsistent control read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF416ZTT bam alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AHC, ENCFF806TVZ 1111136771 ENCODE Processing Pipeline 2b1e66773ae7b5ddda0d202113b8f92c https://www.encodeproject.org/files/ENCFF416ZTT/@@download/ENCFF416ZTT.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF651IFB fastq reads ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 2 50 single-ended 155684543 Bing Ren, UCSD 5af4adf4fc68877ea5f5062b17939225 SRA:SRR3651830 https://www.encodeproject.org/files/ENCFF651IFB/@@download/ENCFF651IFB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQT/ released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF914HIT bam alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AGW, ENCFF651IFB, ENCFF806TVZ 961877725 ENCODE Processing Pipeline 270631a375ab36efd568bb4e09ed9557 https://www.encodeproject.org/files/ENCFF914HIT/@@download/ENCFF914HIT.bam mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF743HCG bigBed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF437NDN 1432474 ENCODE Processing Pipeline a673e7955a3b4874ac81b3f0d169ea2d https://www.encodeproject.org/files/ENCFF743HCG/@@download/ENCFF743HCG.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF437NDN bed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF914HIT 711431 ENCODE Processing Pipeline faac1e3fbc88684d8c594a3665a2504b https://www.encodeproject.org/files/ENCFF437NDN/@@download/ENCFF437NDN.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF517NGE bed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF416ZTT, ENCFF431MET 739783 ENCODE Processing Pipeline cbc6bfd7c5c7ee60437cb80448b14087 https://www.encodeproject.org/files/ENCFF517NGE/@@download/ENCFF517NGE.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF794VDW bed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF416ZTT, ENCFF431MET, ENCFF914HIT 797066 ENCODE Processing Pipeline 6f17c375464020951e0e744b7f9174c5 https://www.encodeproject.org/files/ENCFF794VDW/@@download/ENCFF794VDW.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF323UHX bigWig signal p-value ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF914HIT 496387960 ENCODE Processing Pipeline d4abbaaf5dd7053d964a8dfb3c1b9d50 https://www.encodeproject.org/files/ENCFF323UHX/@@download/ENCFF323UHX.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF084WTV bigBed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF794VDW 1828533 ENCODE Processing Pipeline 178a177ba77f2eabb1d1454c6739f210 https://www.encodeproject.org/files/ENCFF084WTV/@@download/ENCFF084WTV.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF811NZX bigBed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF517NGE 1781425 ENCODE Processing Pipeline bdb8feda658eda5430a49bd32f6c15b0 https://www.encodeproject.org/files/ENCFF811NZX/@@download/ENCFF811NZX.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF408WQE bigWig signal p-value ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF416ZTT, ENCFF431MET 595052502 ENCODE Processing Pipeline e2a3951ba5acea052da11bf4d83adfc2 https://www.encodeproject.org/files/ENCFF408WQE/@@download/ENCFF408WQE.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF971XMH bigWig signal p-value ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF416ZTT, ENCFF431MET, ENCFF914HIT 861475467 ENCODE Processing Pipeline 954d01ad59719885397dd63a94a7e6a0 https://www.encodeproject.org/files/ENCFF971XMH/@@download/ENCFF971XMH.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF182KLF bigWig fold change over control ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF416ZTT, ENCFF431MET 584287960 ENCODE Processing Pipeline f8d98c5436f897b66d30b5d28338f2c7 https://www.encodeproject.org/files/ENCFF182KLF/@@download/ENCFF182KLF.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF550SFR bigWig fold change over control ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF914HIT 519048476 ENCODE Processing Pipeline 15187cc35b5c603df7494d39295cd7ca https://www.encodeproject.org/files/ENCFF550SFR/@@download/ENCFF550SFR.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF739LYN bigWig fold change over control ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF416ZTT, ENCFF431MET, ENCFF914HIT 867578704 ENCODE Processing Pipeline 78671cf28b5e016acfb2e63a272f8365 https://www.encodeproject.org/files/ENCFF739LYN/@@download/ENCFF739LYN.bigWig mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF740POP bigBed narrowPeak replicated peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF979VDV 646533 ENCODE Processing Pipeline 7d7105ed2e874fd7937d300f9ef20488 https://www.encodeproject.org/files/ENCFF740POP/@@download/ENCFF740POP.bigBed mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF979VDV bed narrowPeak replicated peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF437NDN, ENCFF517NGE, ENCFF794VDW 234826 ENCODE Processing Pipeline 53b82dd7f69d7793fc4b1abde2d1374d https://www.encodeproject.org/files/ENCFF979VDV/@@download/ENCFF979VDV.bed.gz mm10-minimal archived low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF837IMP bam unfiltered alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHC, ENCFF018NEO 1548779848 ENCODE Processing Pipeline 1a24060f645d302e774e63ee07c144d0 https://www.encodeproject.org/files/ENCFF837IMP/@@download/ENCFF837IMP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF791FHZ bam alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHC, ENCFF018NEO 1110921478 ENCODE Processing Pipeline 2c581736ce10f3fff1ac1e79ccdbb534 https://www.encodeproject.org/files/ENCFF791FHZ/@@download/ENCFF791FHZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF685NLF bam unfiltered alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGW, ENCFF018NEO, ENCFF651IFB 1302578180 ENCODE Processing Pipeline df6c25621f03b1c36f895577e2318f38 https://www.encodeproject.org/files/ENCFF685NLF/@@download/ENCFF685NLF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF895HAZ bam alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGW, ENCFF018NEO, ENCFF651IFB 916300653 ENCODE Processing Pipeline 168b6519bc2dd793f3bf3dad9472ada8 https://www.encodeproject.org/files/ENCFF895HAZ/@@download/ENCFF895HAZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF509VUN bed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF517WIG, ENCFF791FHZ, ENCFF895HAZ 931436 ENCODE Processing Pipeline ac221f5c57244860ccc8a42a1de05ea4 https://www.encodeproject.org/files/ENCFF509VUN/@@download/ENCFF509VUN.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF707VXD bed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF895HAZ 631012 ENCODE Processing Pipeline 7ef9bde1a8e6384f93031e2e20a6e82b https://www.encodeproject.org/files/ENCFF707VXD/@@download/ENCFF707VXD.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF614LMM bed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF791FHZ 639933 ENCODE Processing Pipeline f120409b2dc9b5efca183602767f8db7 https://www.encodeproject.org/files/ENCFF614LMM/@@download/ENCFF614LMM.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF241YSK bigBed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF614LMM 1561770 ENCODE Processing Pipeline 6a530fb868fdb1639ff626cb5866012c https://www.encodeproject.org/files/ENCFF241YSK/@@download/ENCFF241YSK.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF025RIX bigBed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF509VUN 2140022 ENCODE Processing Pipeline 670f70d2505443913f3d0fe07c0af4d8 https://www.encodeproject.org/files/ENCFF025RIX/@@download/ENCFF025RIX.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF544CTS bigBed narrowPeak peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF707VXD 1290625 ENCODE Processing Pipeline e5e5b490875f9ab1a266c12cba9b908f https://www.encodeproject.org/files/ENCFF544CTS/@@download/ENCFF544CTS.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF879HFQ bigWig signal p-value ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF895HAZ 530452227 ENCODE Processing Pipeline aa17a2efc6121a148f099e263543f60d https://www.encodeproject.org/files/ENCFF879HFQ/@@download/ENCFF879HFQ.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF870XGD bigWig signal p-value ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF791FHZ 630903432 ENCODE Processing Pipeline e5eed0b6b7c17d117fef6a9899341c6a https://www.encodeproject.org/files/ENCFF870XGD/@@download/ENCFF870XGD.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF113MEX bigWig fold change over control ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF517WIG, ENCFF895HAZ 513426331 ENCODE Processing Pipeline e9511dcefeb2181b4252a7d7e9275680 https://www.encodeproject.org/files/ENCFF113MEX/@@download/ENCFF113MEX.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF984UBA bigWig signal p-value ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF517WIG, ENCFF791FHZ, ENCFF895HAZ 694851565 ENCODE Processing Pipeline 53c5ef297a54a711455d96716c4134fc https://www.encodeproject.org/files/ENCFF984UBA/@@download/ENCFF984UBA.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF015FDX bigWig fold change over control ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF791FHZ 577821182 ENCODE Processing Pipeline a0cb455beebcb9297ccba1416e248464 https://www.encodeproject.org/files/ENCFF015FDX/@@download/ENCFF015FDX.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF156SIF bigWig fold change over control ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF517WIG, ENCFF791FHZ, ENCFF895HAZ 837703771 ENCODE Processing Pipeline 459f9be6355a79f59960192b61c42d8a https://www.encodeproject.org/files/ENCFF156SIF/@@download/ENCFF156SIF.bigWig mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF953WTE bed narrowPeak replicated peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF509VUN, ENCFF614LMM, ENCFF707VXD 222914 ENCODE Processing Pipeline cc6368772b1dc334a9515e6430f534ac https://www.encodeproject.org/files/ENCFF953WTE/@@download/ENCFF953WTE.bed.gz mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF634TDI bigBed narrowPeak replicated peaks ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF953WTE 610506 ENCODE Processing Pipeline fd8688d8353e98eb0d50d6e81016e8c8 https://www.encodeproject.org/files/ENCFF634TDI/@@download/ENCFF634TDI.bigBed mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF002AOV fastq reads ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1386739889 Bing Ren, UCSD f01a1c3800ceea38ca91a193b314ef54 SRA:SRR3652920 https://www.encodeproject.org/files/ENCFF002AOV/@@download/ENCFF002AOV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQT/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths ENCFF002AOZ fastq reads ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1361972697 Bing Ren, UCSD 330a458605f6113e92a51955b5d6636c SRA:SRR3652919 https://www.encodeproject.org/files/ENCFF002AOZ/@@download/ENCFF002AOZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQX/ released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF437PSC bam alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOV, ENCFF806TVZ 926929744 ENCODE Processing Pipeline 9bb03c1ed9cbd9a3a5a847ed5ce3f710 https://www.encodeproject.org/files/ENCFF437PSC/@@download/ENCFF437PSC.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF687ALP bam alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AOZ, ENCFF806TVZ 1168700821 ENCODE Processing Pipeline 69ca5b5e2c1ee15f5878d1e45a72c26b https://www.encodeproject.org/files/ENCFF687ALP/@@download/ENCFF687ALP.bam mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF532TXG bed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF437PSC 913132 ENCODE Processing Pipeline cb672fcdf3b50608244b9155db27bd1d https://www.encodeproject.org/files/ENCFF532TXG/@@download/ENCFF532TXG.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF941BCA bed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF687ALP 833103 ENCODE Processing Pipeline 1873910e90dfb7bbfbd36ed1ad04e1e8 https://www.encodeproject.org/files/ENCFF941BCA/@@download/ENCFF941BCA.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF719ZSJ bed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF431MET, ENCFF437PSC, ENCFF687ALP 907575 ENCODE Processing Pipeline 61c48d187cd3d391587fd7f0ca0bc77a https://www.encodeproject.org/files/ENCFF719ZSJ/@@download/ENCFF719ZSJ.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF665OYW bigBed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF941BCA 2085919 ENCODE Processing Pipeline 41cc7e9a1043acfc6ce555f4d05ec31e https://www.encodeproject.org/files/ENCFF665OYW/@@download/ENCFF665OYW.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF059TBX bigBed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF719ZSJ 2236476 ENCODE Processing Pipeline 3593856f501b384192ea0805eb4c7557 https://www.encodeproject.org/files/ENCFF059TBX/@@download/ENCFF059TBX.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF844TFC bigBed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF532TXG 2295570 ENCODE Processing Pipeline d87d35064be9d2786856304cf5e3ed0c https://www.encodeproject.org/files/ENCFF844TFC/@@download/ENCFF844TFC.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF919JNI bigWig signal p-value ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF437PSC 475700436 ENCODE Processing Pipeline aebefb49dd98cb5aa8c64a3681c1a71f https://www.encodeproject.org/files/ENCFF919JNI/@@download/ENCFF919JNI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF105JVS bigWig signal p-value ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF687ALP 482057271 ENCODE Processing Pipeline f3b2256a9b9fe4c19a23cbc32250822c https://www.encodeproject.org/files/ENCFF105JVS/@@download/ENCFF105JVS.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF992FLL bigWig signal p-value ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF431MET, ENCFF437PSC, ENCFF687ALP 668074380 ENCODE Processing Pipeline e4fe508d3fc3208ab4a6c8553be1d6a0 https://www.encodeproject.org/files/ENCFF992FLL/@@download/ENCFF992FLL.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF262ARI bigWig fold change over control ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF431MET, ENCFF437PSC 474549812 ENCODE Processing Pipeline b02ab390428f4e4aaa6ae410a8bd0621 https://www.encodeproject.org/files/ENCFF262ARI/@@download/ENCFF262ARI.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF224MNK bigWig fold change over control ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF431MET, ENCFF687ALP 516600131 ENCODE Processing Pipeline 3aa99b68555cec6fb03098bc7df940a0 https://www.encodeproject.org/files/ENCFF224MNK/@@download/ENCFF224MNK.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF428XYN bigWig fold change over control ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF431MET, ENCFF437PSC, ENCFF687ALP 756907629 ENCODE Processing Pipeline 9833e9e059789cf2668d46d5a06e5a2e https://www.encodeproject.org/files/ENCFF428XYN/@@download/ENCFF428XYN.bigWig mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF491IDU bigBed narrowPeak replicated peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF087EUA 1739276 ENCODE Processing Pipeline bee970878ed42fbdf66833dcffc650fc https://www.encodeproject.org/files/ENCFF491IDU/@@download/ENCFF491IDU.bigBed mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF087EUA bed narrowPeak replicated peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF532TXG, ENCFF719ZSJ, ENCFF941BCA 661951 ENCODE Processing Pipeline b7f21b3189b7dafbc7b2be0eacfc0d19 https://www.encodeproject.org/files/ENCFF087EUA/@@download/ENCFF087EUA.bed.gz mm10-minimal archived low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF913FSN bam unfiltered alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOV, ENCFF018NEO 1600456219 ENCODE Processing Pipeline e6c3ea056876ac87a9c20d0883ce85bc https://www.encodeproject.org/files/ENCFF913FSN/@@download/ENCFF913FSN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF734OHU bam unfiltered alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOZ, ENCFF018NEO 1224420309 ENCODE Processing Pipeline 8ec54e0a6f04c1151303b8cd03644dbf https://www.encodeproject.org/files/ENCFF734OHU/@@download/ENCFF734OHU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF300HPE bam alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOZ, ENCFF018NEO 907753170 ENCODE Processing Pipeline dab74336aaf5052bee2c377c70061b9d https://www.encodeproject.org/files/ENCFF300HPE/@@download/ENCFF300HPE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF334ZFR bam alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOV, ENCFF018NEO 926782774 ENCODE Processing Pipeline e2b8fd5de919b30f2be4b14fc25edebb https://www.encodeproject.org/files/ENCFF334ZFR/@@download/ENCFF334ZFR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF517ESO bed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF334ZFR, ENCFF517WIG 865473 ENCODE Processing Pipeline 29dc6a277c06e4a6bccca3eb81d1a3c8 https://www.encodeproject.org/files/ENCFF517ESO/@@download/ENCFF517ESO.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF937KAV bed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF300HPE, ENCFF517WIG 846873 ENCODE Processing Pipeline e325d7d16107f78ca53b43ae68bc97a3 https://www.encodeproject.org/files/ENCFF937KAV/@@download/ENCFF937KAV.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF806KCU bed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF300HPE, ENCFF334ZFR, ENCFF517WIG 1026289 ENCODE Processing Pipeline 5e84aed76a362112665ac43fba6c0180 https://www.encodeproject.org/files/ENCFF806KCU/@@download/ENCFF806KCU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF412YUK bigBed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF517ESO 2222487 ENCODE Processing Pipeline 4c02b03eba019c6c33b9b0d7c6896b27 https://www.encodeproject.org/files/ENCFF412YUK/@@download/ENCFF412YUK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF339TDI bigBed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF937KAV 2121972 ENCODE Processing Pipeline 78a445d233d230873cfae780da5bf4ab https://www.encodeproject.org/files/ENCFF339TDI/@@download/ENCFF339TDI.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF918DWP bigBed narrowPeak peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF806KCU 2508264 ENCODE Processing Pipeline 657268f3cfdf42ba8a7fbc39ad5f6df2 https://www.encodeproject.org/files/ENCFF918DWP/@@download/ENCFF918DWP.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF622GNJ bigWig signal p-value ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF334ZFR, ENCFF517WIG 523860567 ENCODE Processing Pipeline 428f72bc3229a3eabd0a882136965cd6 https://www.encodeproject.org/files/ENCFF622GNJ/@@download/ENCFF622GNJ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF990QQC bigWig signal p-value ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF300HPE, ENCFF517WIG 443086315 ENCODE Processing Pipeline 160a12f0059b7647f2a22781e56b8f80 https://www.encodeproject.org/files/ENCFF990QQC/@@download/ENCFF990QQC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF235IFF bigWig signal p-value ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF300HPE, ENCFF334ZFR, ENCFF517WIG 702293351 ENCODE Processing Pipeline 04a3782d8a60a9f40770b1ad4599439c https://www.encodeproject.org/files/ENCFF235IFF/@@download/ENCFF235IFF.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF533TCH bigWig fold change over control ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF334ZFR, ENCFF517WIG 525241258 ENCODE Processing Pipeline b4e94da31561a7d75c22920138249d6d https://www.encodeproject.org/files/ENCFF533TCH/@@download/ENCFF533TCH.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF928ZCE bigWig fold change over control ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF300HPE, ENCFF517WIG 526494006 ENCODE Processing Pipeline 0811f3f5ad4de36d1e72dd9fed103a65 https://www.encodeproject.org/files/ENCFF928ZCE/@@download/ENCFF928ZCE.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF638WTR bigWig fold change over control ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF300HPE, ENCFF334ZFR, ENCFF517WIG 799324008 ENCODE Processing Pipeline f4371323cb2b44c54544d08b7ae6c08e https://www.encodeproject.org/files/ENCFF638WTR/@@download/ENCFF638WTR.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF479FVK bed narrowPeak replicated peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF517ESO, ENCFF806KCU, ENCFF937KAV 677931 ENCODE Processing Pipeline c04c22324c0be706865ea1bc902ccfa3 https://www.encodeproject.org/files/ENCFF479FVK/@@download/ENCFF479FVK.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF857PUK bigBed narrowPeak replicated peaks ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF479FVK 1743891 ENCODE Processing Pipeline bbf311ae3d7bef4ae6a800104b9707bf https://www.encodeproject.org/files/ENCFF857PUK/@@download/ENCFF857PUK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF002AOX fastq reads ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 2010768436 Bing Ren, UCSD 8ac2fa4bc717eb64acc021064f7104a0 SRA:SRR3653360 https://www.encodeproject.org/files/ENCFF002AOX/@@download/ENCFF002AOX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002ARB/ released moderate library complexity, mild to moderate bottlenecking ENCFF002APA fastq reads ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1963880182 Bing Ren, UCSD 94d890c5a196e0f1564f02f49922ec92 SRA:SRR3653359 https://www.encodeproject.org/files/ENCFF002APA/@@download/ENCFF002APA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQW/ released moderate library complexity, mild to moderate bottlenecking ENCFF657CBF bam alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AOX, ENCFF806TVZ 1282638155 ENCODE Processing Pipeline e873e5e1c81e5d64be22a3fa8da36906 https://www.encodeproject.org/files/ENCFF657CBF/@@download/ENCFF657CBF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF799MSF bam alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002APA, ENCFF806TVZ 1183208202 ENCODE Processing Pipeline f3c65e0f824491188e547f7c3062fb9a https://www.encodeproject.org/files/ENCFF799MSF/@@download/ENCFF799MSF.bam mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF824QHB bed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF657CBF, ENCFF819FNM 892265 ENCODE Processing Pipeline 560e96c45eb0f2315992a84d34104d07 https://www.encodeproject.org/files/ENCFF824QHB/@@download/ENCFF824QHB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF167GWB bed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF657CBF, ENCFF799MSF, ENCFF819FNM 919654 ENCODE Processing Pipeline 64362c43521262b0052e2df420978337 https://www.encodeproject.org/files/ENCFF167GWB/@@download/ENCFF167GWB.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF732TLB bigBed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167GWB 2643716 ENCODE Processing Pipeline 4c9ec0c9ad4cc69e8405753b5b212329 https://www.encodeproject.org/files/ENCFF732TLB/@@download/ENCFF732TLB.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF559MHU bed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF799MSF, ENCFF819FNM 1037333 ENCODE Processing Pipeline 11654bdbde4c860d528c476af21fb86d https://www.encodeproject.org/files/ENCFF559MHU/@@download/ENCFF559MHU.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF520STS bigBed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF559MHU 2423517 ENCODE Processing Pipeline f9f3d96fb77043cc15c3069f43df813e https://www.encodeproject.org/files/ENCFF520STS/@@download/ENCFF520STS.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF477NIL bigBed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF824QHB 2647380 ENCODE Processing Pipeline 107c7604420571870ba9c0ab50c1d13a https://www.encodeproject.org/files/ENCFF477NIL/@@download/ENCFF477NIL.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF123HLT bigWig signal p-value ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF657CBF, ENCFF819FNM 462821483 ENCODE Processing Pipeline 8a73310a0c705b01343c4d168a73abcb https://www.encodeproject.org/files/ENCFF123HLT/@@download/ENCFF123HLT.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF864ALY bigWig signal p-value ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF799MSF, ENCFF819FNM 385764404 ENCODE Processing Pipeline ff2803b393c51e7c43c2aa4f0ba86730 https://www.encodeproject.org/files/ENCFF864ALY/@@download/ENCFF864ALY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF823KAH bigWig signal p-value ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF657CBF, ENCFF799MSF, ENCFF819FNM 673833488 ENCODE Processing Pipeline c0f582fc564eac755c15a1f3e843fa25 https://www.encodeproject.org/files/ENCFF823KAH/@@download/ENCFF823KAH.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF214GRY bigWig fold change over control ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF261VSL, ENCFF657CBF, ENCFF819FNM 453202382 ENCODE Processing Pipeline 6ed619c0dfd9b5ea575bef3dc9547cf5 https://www.encodeproject.org/files/ENCFF214GRY/@@download/ENCFF214GRY.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF140UIM bigWig fold change over control ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF261VSL, ENCFF799MSF, ENCFF819FNM 432926019 ENCODE Processing Pipeline b90c911eaabf949de6c2f2c992508f18 https://www.encodeproject.org/files/ENCFF140UIM/@@download/ENCFF140UIM.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF432JMG bed narrowPeak replicated peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF167GWB, ENCFF559MHU, ENCFF824QHB 780151 ENCODE Processing Pipeline d88e84882310ac943c2cdd66596b8bb8 https://www.encodeproject.org/files/ENCFF432JMG/@@download/ENCFF432JMG.bed.gz mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF466VJI bigWig fold change over control ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF261VSL, ENCFF657CBF, ENCFF799MSF, ENCFF819FNM 698827187 ENCODE Processing Pipeline 12f9fd6d3342b59dca9b47ec39e29c4a https://www.encodeproject.org/files/ENCFF466VJI/@@download/ENCFF466VJI.bigWig mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF472BGL bigBed narrowPeak replicated peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF432JMG 1803474 ENCODE Processing Pipeline 6d620398f0489e573fd9faaf3f400cf8 https://www.encodeproject.org/files/ENCFF472BGL/@@download/ENCFF472BGL.bigBed mm10-minimal archived moderate library complexity, mild to moderate bottlenecking ENCFF850FIP bam unfiltered alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOX, ENCFF018NEO 2091852046 ENCODE Processing Pipeline fdd00de543201f778b4f0e26eb37cb05 https://www.encodeproject.org/files/ENCFF850FIP/@@download/ENCFF850FIP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF152TPF bam unfiltered alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002APA, ENCFF018NEO 2023219376 ENCODE Processing Pipeline f87b0b09449255f82fb560e526ace4c8 https://www.encodeproject.org/files/ENCFF152TPF/@@download/ENCFF152TPF.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF240ABD bam alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOX, ENCFF018NEO 1282328866 ENCODE Processing Pipeline 36ef6278e8a9741cc8d2518a40639c30 https://www.encodeproject.org/files/ENCFF240ABD/@@download/ENCFF240ABD.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF241ILH bam alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002APA, ENCFF018NEO 1182923512 ENCODE Processing Pipeline 97898f129f31b5e69b542a9666168063 https://www.encodeproject.org/files/ENCFF241ILH/@@download/ENCFF241ILH.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF663YWY bed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF240ABD, ENCFF472HVK, ENCFF815EAE 892776 ENCODE Processing Pipeline 81906775895941d902bb567cb3edcf76 https://www.encodeproject.org/files/ENCFF663YWY/@@download/ENCFF663YWY.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF360DYC bed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF241ILH, ENCFF472HVK, ENCFF815EAE 1046640 ENCODE Processing Pipeline 91770f599b59448cb4182490012641a4 https://www.encodeproject.org/files/ENCFF360DYC/@@download/ENCFF360DYC.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF013ZYU bed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF240ABD, ENCFF241ILH, ENCFF472HVK, ENCFF815EAE 919777 ENCODE Processing Pipeline c717fc931f5c00a44d0be184c834a001 https://www.encodeproject.org/files/ENCFF013ZYU/@@download/ENCFF013ZYU.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF136ZGJ bigBed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF663YWY 2649324 ENCODE Processing Pipeline e2d5caf111341f8e04e5c1dfc23c589f https://www.encodeproject.org/files/ENCFF136ZGJ/@@download/ENCFF136ZGJ.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF052BOV bigBed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF360DYC 2438287 ENCODE Processing Pipeline eaff9310ff2d3686fc0f0e826186de00 https://www.encodeproject.org/files/ENCFF052BOV/@@download/ENCFF052BOV.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF639TMX bigBed narrowPeak peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF013ZYU 2645418 ENCODE Processing Pipeline e67c3c088919d4b7e6bce4434942cece https://www.encodeproject.org/files/ENCFF639TMX/@@download/ENCFF639TMX.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF236XNH bigWig signal p-value ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF240ABD, ENCFF472HVK, ENCFF815EAE 443859649 ENCODE Processing Pipeline 74480d4eae790bfc85537f86c3caa136 https://www.encodeproject.org/files/ENCFF236XNH/@@download/ENCFF236XNH.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF431HSY bigWig signal p-value ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF241ILH, ENCFF472HVK, ENCFF815EAE 438006444 ENCODE Processing Pipeline 804494d824ff776a86a89c2457496fbc https://www.encodeproject.org/files/ENCFF431HSY/@@download/ENCFF431HSY.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF139ZOZ bigWig signal p-value ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF240ABD, ENCFF241ILH, ENCFF472HVK, ENCFF815EAE 673849100 ENCODE Processing Pipeline 0014d74028ff6ea20bc9c9b7fdefffc9 https://www.encodeproject.org/files/ENCFF139ZOZ/@@download/ENCFF139ZOZ.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF443FZG bigWig fold change over control ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF240ABD, ENCFF472HVK, ENCFF815EAE 454034934 ENCODE Processing Pipeline 95b28771a014d9d92a5c17edc5aa2e3d https://www.encodeproject.org/files/ENCFF443FZG/@@download/ENCFF443FZG.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF312GDM bigWig fold change over control ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF241ILH, ENCFF472HVK, ENCFF815EAE 433030220 ENCODE Processing Pipeline 6a48b918fa7b987b139e6bb93c9d7d59 https://www.encodeproject.org/files/ENCFF312GDM/@@download/ENCFF312GDM.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF331CRG bigBed narrowPeak replicated peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF587BYL 1874035 ENCODE Processing Pipeline 234b6883ca411f5820c0074c49a0c8a0 https://www.encodeproject.org/files/ENCFF331CRG/@@download/ENCFF331CRG.bigBed mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF483COK bigWig fold change over control ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF240ABD, ENCFF241ILH, ENCFF472HVK, ENCFF815EAE 698763119 ENCODE Processing Pipeline 871385d749710357492f149822fc8a1b https://www.encodeproject.org/files/ENCFF483COK/@@download/ENCFF483COK.bigWig mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF587BYL bed narrowPeak replicated peaks ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF013ZYU, ENCFF360DYC, ENCFF663YWY 809028 ENCODE Processing Pipeline 7187339a1d0f5c147ac07fb2c91af7ba https://www.encodeproject.org/files/ENCFF587BYL/@@download/ENCFF587BYL.bed.gz mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF537ACV fastq reads ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 752589282 Michael Snyder, Stanford 94aeacafd015e30a03a20970875448d2 https://www.encodeproject.org/files/ENCFF537ACV/@@download/ENCFF537ACV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF453MVP fastq reads ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 489295777 Michael Snyder, Stanford 1e4e4879547294300ca75acbf35e6b64 https://www.encodeproject.org/files/ENCFF453MVP/@@download/ENCFF453MVP.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF847YWU bed narrowPeak peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF501VIR, ENCFF887OHE 622607 Michael Snyder, Stanford b9ba3986bb7e4afb5f54048a1f08c0a8 https://www.encodeproject.org/files/ENCFF847YWU/@@download/ENCFF847YWU.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF501VIR bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF537ACV 742859506 Michael Snyder, Stanford 7fb635f3ea24fc22c68e5a97ff0b829b https://www.encodeproject.org/files/ENCFF501VIR/@@download/ENCFF501VIR.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF887OHE bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF453MVP 477824062 Michael Snyder, Stanford 5f7a6e57c2549fade292f5626d8352a8 https://www.encodeproject.org/files/ENCFF887OHE/@@download/ENCFF887OHE.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF741VWN bigBed narrowPeak peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF847YWU 1256417 ENCODE Consortium bc638b0ebfee492d0dca9fa865205327 https://www.encodeproject.org/files/ENCFF741VWN/@@download/ENCFF741VWN.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF349KCO bam unfiltered alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF453MVP 653816003 ENCODE Processing Pipeline 5526aa320fe1d81e1c298a399dad198d https://www.encodeproject.org/files/ENCFF349KCO/@@download/ENCFF349KCO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF279GLQ bam unfiltered alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF537ACV 1009045780 ENCODE Processing Pipeline 77ca81e3ed29338c9bf67dca9aa1437b https://www.encodeproject.org/files/ENCFF279GLQ/@@download/ENCFF279GLQ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF908WTX bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF453MVP 418935032 ENCODE Processing Pipeline ea78f282d8b778e49d9c799ec7e35b0c https://www.encodeproject.org/files/ENCFF908WTX/@@download/ENCFF908WTX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF450DQZ bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF537ACV 670330387 ENCODE Processing Pipeline dd1964720745fe256d7c47c7d7bc5db9 https://www.encodeproject.org/files/ENCFF450DQZ/@@download/ENCFF450DQZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF375QBR bigWig signal p-value ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF450DQZ 233080943 ENCODE Processing Pipeline 3dc7fe19d03e498ce7888bafe1511d90 https://www.encodeproject.org/files/ENCFF375QBR/@@download/ENCFF375QBR.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF717YGI bigWig signal p-value ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF908WTX 213558322 ENCODE Processing Pipeline e9fe18140610b5594d3cbe182bd1d708 https://www.encodeproject.org/files/ENCFF717YGI/@@download/ENCFF717YGI.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF472DZE bigWig signal p-value ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF339ZWC, ENCFF450DQZ, ENCFF908WTX 230987985 ENCODE Processing Pipeline 7de4fd0322e1fe98fe555cc8ddb439e7 https://www.encodeproject.org/files/ENCFF472DZE/@@download/ENCFF472DZE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF843NKI bigWig fold change over control ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF450DQZ 268465315 ENCODE Processing Pipeline 6d8aa510a9625884e645255744f84f6d https://www.encodeproject.org/files/ENCFF843NKI/@@download/ENCFF843NKI.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF055HUS bigWig fold change over control ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF908WTX 181004796 ENCODE Processing Pipeline 57de49d60c00188c96c79482c5b1e572 https://www.encodeproject.org/files/ENCFF055HUS/@@download/ENCFF055HUS.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF177GZH bigWig fold change over control ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF339ZWC, ENCFF450DQZ, ENCFF908WTX 399947394 ENCODE Processing Pipeline 78e3424220be8e82c32e084d6e16ce81 https://www.encodeproject.org/files/ENCFF177GZH/@@download/ENCFF177GZH.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF450XHA bed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF450DQZ 5247723 ENCODE Processing Pipeline aabb2cdcb0fc55b941ae88ae285d4e28 https://www.encodeproject.org/files/ENCFF450XHA/@@download/ENCFF450XHA.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF782LDU bed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF339ZWC, ENCFF450DQZ, ENCFF908WTX 5628497 ENCODE Processing Pipeline a576b1f55ddfb17afd92c9ba5d9f4bcf https://www.encodeproject.org/files/ENCFF782LDU/@@download/ENCFF782LDU.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF885IKN bed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF339ZWC, ENCFF908WTX 4677372 ENCODE Processing Pipeline 370ad4c7a8d7ddfeecc1fe786740d202 https://www.encodeproject.org/files/ENCFF885IKN/@@download/ENCFF885IKN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF278REM bigBed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 ENCFF885IKN 10028625 ENCODE Processing Pipeline 15819c6f2e16a4bbe5a4a01afa7ef1a9 https://www.encodeproject.org/files/ENCFF278REM/@@download/ENCFF278REM.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF265QCZ bigBed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 ENCFF450XHA 12640545 ENCODE Processing Pipeline 935a05605498c8e5655f85c84651a28a https://www.encodeproject.org/files/ENCFF265QCZ/@@download/ENCFF265QCZ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF306OFN bigBed narrowPeak peaks and background as input for IDR ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF782LDU 12865821 ENCODE Processing Pipeline 07502946563afe31826b2a02828fde04 https://www.encodeproject.org/files/ENCFF306OFN/@@download/ENCFF306OFN.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF059YTK bed narrowPeak conservative idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF450XHA, ENCFF547MET, ENCFF782LDU, ENCFF885IKN 644149 ENCODE Processing Pipeline 820e05f8bbf8428a42f8cd46934854f6 https://www.encodeproject.org/files/ENCFF059YTK/@@download/ENCFF059YTK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF460UQA bigBed narrowPeak conservative idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF059YTK 1367283 ENCODE Processing Pipeline 51d0e0593c09f4a4979771b50a33fe97 https://www.encodeproject.org/files/ENCFF460UQA/@@download/ENCFF460UQA.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF079ITK bed narrowPeak optimal idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF450XHA, ENCFF547MET, ENCFF782LDU, ENCFF885IKN 648800 ENCODE Processing Pipeline a538df273a2b23d31a164ba1c571f817 https://www.encodeproject.org/files/ENCFF079ITK/@@download/ENCFF079ITK.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF191ZRE bigBed narrowPeak optimal idr thresholded peaks ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF079ITK 1376237 ENCODE Processing Pipeline 2a45bc21154e3e3821e00b2b12de9c1d https://www.encodeproject.org/files/ENCFF191ZRE/@@download/ENCFF191ZRE.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF187LXA bam alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF028VOD, ENCFF399GVU, ENCFF806TVZ 2763854612 ENCODE Processing Pipeline b1ddda01a286293bae702bae3f31b98a https://www.encodeproject.org/files/ENCFF187LXA/@@download/ENCFF187LXA.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF959ORU bam alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF034IFL, ENCFF143LQC, ENCFF806TVZ 2782095896 ENCODE Processing Pipeline 36ae0ef2c851a1f3aea0527ccfca37aa https://www.encodeproject.org/files/ENCFF959ORU/@@download/ENCFF959ORU.bam mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF143LQC fastq reads ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 2 50 single-ended 729353503 Bing Ren, UCSD affa318e09b0f43eb2ac87e836850f83 SRA:SRR3651636 https://www.encodeproject.org/files/ENCFF143LQC/@@download/ENCFF143LQC.fastq.gz Illumina HiSeq 2500 /files/ENCFF545UQA/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF399GVU fastq reads ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 1 50 single-ended 2715965483 Bing Ren, UCSD 7a020529392c2fe5683a6badc3321fab SRA:SRR3651634 https://www.encodeproject.org/files/ENCFF399GVU/@@download/ENCFF399GVU.fastq.gz Illumina HiSeq 2500 /files/ENCFF393EAJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF034IFL fastq reads ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 1 50 single-ended 3156392065 Bing Ren, UCSD 7a94ac8631f0fad27b70f4dac1de9117 SRA:SRR3651637 https://www.encodeproject.org/files/ENCFF034IFL/@@download/ENCFF034IFL.fastq.gz Illumina HiSeq 2000 /files/ENCFF545UQA/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF028VOD fastq reads ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 2 50 single-ended 1075177001 Bing Ren, UCSD d5b87daf975147cc21b0a780643d24ac SRA:SRR3651635 https://www.encodeproject.org/files/ENCFF028VOD/@@download/ENCFF028VOD.fastq.gz Illumina HiSeq 2500 /files/ENCFF393EAJ/ released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF088OCX bed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF627MYB, ENCFF959ORU 3108860 ENCODE Processing Pipeline 98a77055c72f8d7df560957303aee420 https://www.encodeproject.org/files/ENCFF088OCX/@@download/ENCFF088OCX.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF226CLZ bed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF187LXA, ENCFF371GCA, ENCFF627MYB, ENCFF959ORU 2991352 ENCODE Processing Pipeline ac4c6ca2f713927f133d7bdc1e3ee4cb https://www.encodeproject.org/files/ENCFF226CLZ/@@download/ENCFF226CLZ.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF798RHE bigBed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF088OCX 6596533 ENCODE Processing Pipeline 6ededa972f8c30919dde8482cb193de0 https://www.encodeproject.org/files/ENCFF798RHE/@@download/ENCFF798RHE.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF425GYY bed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF187LXA, ENCFF371GCA, ENCFF627MYB 3201458 ENCODE Processing Pipeline bc00c006315b4b0dad6d49458222fc92 https://www.encodeproject.org/files/ENCFF425GYY/@@download/ENCFF425GYY.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF909BAK bigBed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF425GYY 6839120 ENCODE Processing Pipeline 8dc4ecdb0423b23a2f9ba4b14ac0f884 https://www.encodeproject.org/files/ENCFF909BAK/@@download/ENCFF909BAK.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF062SPM bigBed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF226CLZ 6376131 ENCODE Processing Pipeline 206eb81ea43ef760b825e31d1233c582 https://www.encodeproject.org/files/ENCFF062SPM/@@download/ENCFF062SPM.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF569SMO bigWig signal p-value ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF187LXA, ENCFF371GCA, ENCFF627MYB 871554363 ENCODE Processing Pipeline 86b0b3dd4177ba44e70c30c7af60ba94 https://www.encodeproject.org/files/ENCFF569SMO/@@download/ENCFF569SMO.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF587YFM bigWig signal p-value ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF627MYB, ENCFF959ORU 871522696 ENCODE Processing Pipeline 18dce3c4fafa5455ee7af19f9f2a5069 https://www.encodeproject.org/files/ENCFF587YFM/@@download/ENCFF587YFM.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF993OYG bigWig signal p-value ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF187LXA, ENCFF371GCA, ENCFF627MYB, ENCFF959ORU 1208106708 ENCODE Processing Pipeline d276cfcdb8dee01b0331abf9c2cd1228 https://www.encodeproject.org/files/ENCFF993OYG/@@download/ENCFF993OYG.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF687ARI bigWig fold change over control ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF371GCA, ENCFF627MYB, ENCFF959ORU 932203676 ENCODE Processing Pipeline 89171f2e481adf162587785c083d3eed https://www.encodeproject.org/files/ENCFF687ARI/@@download/ENCFF687ARI.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF293PFB bigWig fold change over control ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF187LXA, ENCFF371GCA, ENCFF627MYB 1008572142 ENCODE Processing Pipeline cde96454ee0e66a511d8defd7f639fad https://www.encodeproject.org/files/ENCFF293PFB/@@download/ENCFF293PFB.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF620OHQ bigWig fold change over control ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF187LXA, ENCFF371GCA, ENCFF627MYB, ENCFF959ORU 1513943193 ENCODE Processing Pipeline 1db7a1bb5a129f0b77714d5866ab0d39 https://www.encodeproject.org/files/ENCFF620OHQ/@@download/ENCFF620OHQ.bigWig mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF751SYB bigBed narrowPeak replicated peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF885GIH 5172945 ENCODE Processing Pipeline c32e4b0f9cffe736e97e3de808dcf532 https://www.encodeproject.org/files/ENCFF751SYB/@@download/ENCFF751SYB.bigBed mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF885GIH bed narrowPeak replicated peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF088OCX, ENCFF226CLZ, ENCFF425GYY 3076207 ENCODE Processing Pipeline 19d4411cc0ae9a6f2161b52a06cc923c https://www.encodeproject.org/files/ENCFF885GIH/@@download/ENCFF885GIH.bed.gz mm10-minimal archived mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF701YLW bam unfiltered alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF034IFL, ENCFF143LQC 4523587989 ENCODE Processing Pipeline c222f451885dfc2254369225efd03c00 https://www.encodeproject.org/files/ENCFF701YLW/@@download/ENCFF701YLW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF039LAZ bam unfiltered alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF028VOD, ENCFF399GVU 4418101854 ENCODE Processing Pipeline fc459b92265e83ffa9aefdd9c078f212 https://www.encodeproject.org/files/ENCFF039LAZ/@@download/ENCFF039LAZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF400DYR bam alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF034IFL, ENCFF143LQC 2781659638 ENCODE Processing Pipeline e4040af4b7af34a91728b365ca2121c1 https://www.encodeproject.org/files/ENCFF400DYR/@@download/ENCFF400DYR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF467QLQ bam alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF028VOD, ENCFF399GVU 2763383258 ENCODE Processing Pipeline 2b79a91015ead7273c956005bf446697 https://www.encodeproject.org/files/ENCFF467QLQ/@@download/ENCFF467QLQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF232WHQ bed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF400DYR, ENCFF884PDZ 3082102 ENCODE Processing Pipeline 73b45f7d806789544bed0aea1dd0f747 https://www.encodeproject.org/files/ENCFF232WHQ/@@download/ENCFF232WHQ.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF693WQK bed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF467QLQ 2885371 ENCODE Processing Pipeline 27a896e2cac28344aeb39e2500e02007 https://www.encodeproject.org/files/ENCFF693WQK/@@download/ENCFF693WQK.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF037NLF bed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF400DYR, ENCFF467QLQ, ENCFF884PDZ 2968446 ENCODE Processing Pipeline 7e0def7ab08e6f50c67491c82437fa2a https://www.encodeproject.org/files/ENCFF037NLF/@@download/ENCFF037NLF.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF071SBC bigBed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF232WHQ 6516917 ENCODE Processing Pipeline 27783335712d73b51ea0e74924000372 https://www.encodeproject.org/files/ENCFF071SBC/@@download/ENCFF071SBC.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF807YTB bigBed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF693WQK 6130792 ENCODE Processing Pipeline 3d68da277df583969fda21c5b413a14a https://www.encodeproject.org/files/ENCFF807YTB/@@download/ENCFF807YTB.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF659TQI bigBed narrowPeak peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF037NLF 6312063 ENCODE Processing Pipeline c9e1abda5a78345f1aebd25fc702369f https://www.encodeproject.org/files/ENCFF659TQI/@@download/ENCFF659TQI.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF690QRY bigWig signal p-value ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF400DYR, ENCFF884PDZ 809797356 ENCODE Processing Pipeline 0020c005e2beb212f6e350827e18e51b https://www.encodeproject.org/files/ENCFF690QRY/@@download/ENCFF690QRY.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF026GHD bigWig signal p-value ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF467QLQ 820947420 ENCODE Processing Pipeline ff717fd62349d4a5eb5fc5c367899eb1 https://www.encodeproject.org/files/ENCFF026GHD/@@download/ENCFF026GHD.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF297ZSI bigWig signal p-value ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF400DYR, ENCFF467QLQ, ENCFF884PDZ 1383648708 ENCODE Processing Pipeline 22424250d21cc7b956626bf4bded07bd https://www.encodeproject.org/files/ENCFF297ZSI/@@download/ENCFF297ZSI.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF383YKA bigWig fold change over control ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 ENCFF060JKD, ENCFF400DYR, ENCFF884PDZ 1011306147 ENCODE Processing Pipeline 91646553d3924cb1ecc53b41748266ca https://www.encodeproject.org/files/ENCFF383YKA/@@download/ENCFF383YKA.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF582XAL bigWig fold change over control ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 ENCFF060JKD, ENCFF467QLQ 869346782 ENCODE Processing Pipeline a3284f1fea2dbcade8285ca822f9aac4 https://www.encodeproject.org/files/ENCFF582XAL/@@download/ENCFF582XAL.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF046KVG bigWig fold change over control ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF060JKD, ENCFF400DYR, ENCFF467QLQ, ENCFF884PDZ 1514545098 ENCODE Processing Pipeline d48a1d9572cc65355975fc60519ffd34 https://www.encodeproject.org/files/ENCFF046KVG/@@download/ENCFF046KVG.bigWig mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF111GIJ bigBed narrowPeak replicated peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF924ZOT 4698838 ENCODE Processing Pipeline 3cfe2fc1088b65076f18e6c07fae49ed https://www.encodeproject.org/files/ENCFF111GIJ/@@download/ENCFF111GIJ.bigBed mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF924ZOT bed narrowPeak replicated peaks ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1, 2 ENCFF037NLF, ENCFF232WHQ, ENCFF693WQK 2808453 ENCODE Processing Pipeline e83d0747a58d73a8f87d2966313f7061 https://www.encodeproject.org/files/ENCFF924ZOT/@@download/ENCFF924ZOT.bed.gz mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF001NZA bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NZD 515715187 Michael Snyder, Stanford 41b606d68db24ecf16b04cb798c77ef2 https://www.encodeproject.org/files/ENCFF001NZA/@@download/ENCFF001NZA.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NZB bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NZF 590095268 Michael Snyder, Stanford fb171ad70ff61306716fc4f27fd29c09 https://www.encodeproject.org/files/ENCFF001NZB/@@download/ENCFF001NZB.bam mm9 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NZC bigBed narrowPeak peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YKE 709228 Michael Snyder, Stanford a192a0abbae905f193702c2fac5b2b02 https://www.encodeproject.org/files/ENCFF001NZC/@@download/ENCFF001NZC.bigBed mm9 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NZD fastq reads ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 1161825548 Michael Snyder, Stanford f844cadbcc81f97e4d8edb4ef1565a60 https://www.encodeproject.org/files/ENCFF001NZD/@@download/ENCFF001NZD.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NZF fastq reads ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 1249507627 Michael Snyder, Stanford ce14824798f3af559c6f76f53166ae0e https://www.encodeproject.org/files/ENCFF001NZF/@@download/ENCFF001NZF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001NZH bigWig signal ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NZA, ENCFF001NZB 391427449 Michael Snyder, Stanford 759dfb609b904d513b653d306c8d84b8 https://www.encodeproject.org/files/ENCFF001NZH/@@download/ENCFF001NZH.bigWig mm9 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001YKE bed narrowPeak peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NZA, ENCFF001NZB 313083 Michael Snyder, Stanford eeba1f068aa6d0596cdb59e55320fbdc https://www.encodeproject.org/files/ENCFF001YKE/@@download/ENCFF001YKE.bed.gz mm9 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF302NWK bam unfiltered alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NZF, ENCFF018NEO 1323920210 ENCODE Processing Pipeline 6cfd4ed3d0be51f4a22dd3b2b2132a2f https://www.encodeproject.org/files/ENCFF302NWK/@@download/ENCFF302NWK.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF574RHH bam unfiltered alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NZD, ENCFF018NEO 1268384945 ENCODE Processing Pipeline 3f7b1f984dcc9441738cdd96fde5256d https://www.encodeproject.org/files/ENCFF574RHH/@@download/ENCFF574RHH.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF541FCH bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NZF, ENCFF018NEO 925763687 ENCODE Processing Pipeline 76101cdd976df7bb157d79b5e682f31c https://www.encodeproject.org/files/ENCFF541FCH/@@download/ENCFF541FCH.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF379DPO bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NZD, ENCFF018NEO 885383515 ENCODE Processing Pipeline 54a24c03ea292907db72a3ef2643bb29 https://www.encodeproject.org/files/ENCFF379DPO/@@download/ENCFF379DPO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF383WXN bigWig signal p-value ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF541FCH 291260793 ENCODE Processing Pipeline ca035279b3e068b07b6a11cee6610743 https://www.encodeproject.org/files/ENCFF383WXN/@@download/ENCFF383WXN.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF297ZST bigWig fold change over control ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF379DPO, ENCFF541FCH 574731901 ENCODE Processing Pipeline 7c32800e316524df652bc5a2016e3e8f https://www.encodeproject.org/files/ENCFF297ZST/@@download/ENCFF297ZST.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF335JBI bed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF379DPO 5855088 ENCODE Processing Pipeline d030269d1f627f5869e2908106d3097a https://www.encodeproject.org/files/ENCFF335JBI/@@download/ENCFF335JBI.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF468PLO bed narrowPeak optimal idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF335JBI, ENCFF547MET, ENCFF566TGG, ENCFF780EPD 916833 ENCODE Processing Pipeline 466cad4e469c800c404aa6d99fe6a11d https://www.encodeproject.org/files/ENCFF468PLO/@@download/ENCFF468PLO.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF818JZI bigWig signal p-value ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF379DPO 291615071 ENCODE Processing Pipeline bb83886a1c8f3276740af65562df82f6 https://www.encodeproject.org/files/ENCFF818JZI/@@download/ENCFF818JZI.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF566TGG bed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF541FCH 6409905 ENCODE Processing Pipeline 0b87129a548630e8a736020a93c808fd https://www.encodeproject.org/files/ENCFF566TGG/@@download/ENCFF566TGG.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF895XED bigBed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF780EPD 12693604 ENCODE Processing Pipeline 202eacef62ba3cfdc23e993437231d4d https://www.encodeproject.org/files/ENCFF895XED/@@download/ENCFF895XED.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF813RDM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF468PLO 1733115 ENCODE Processing Pipeline af96c26143155c43e37ca137ba6b393f https://www.encodeproject.org/files/ENCFF813RDM/@@download/ENCFF813RDM.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF978XXC bigWig fold change over control ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF171OVT, ENCFF379DPO 321345569 ENCODE Processing Pipeline 5fdbd76e17dadf89241cce3e9b6e3eec https://www.encodeproject.org/files/ENCFF978XXC/@@download/ENCFF978XXC.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF147CQP bigWig fold change over control ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF171OVT, ENCFF541FCH 356926534 ENCODE Processing Pipeline 022fbf9fea6a01d683f4dd60571fb4c5 https://www.encodeproject.org/files/ENCFF147CQP/@@download/ENCFF147CQP.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF780EPD bed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF379DPO, ENCFF541FCH 6723675 ENCODE Processing Pipeline 2e9fed484b29697b7fa55e08947c3512 https://www.encodeproject.org/files/ENCFF780EPD/@@download/ENCFF780EPD.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF883MPI bed narrowPeak conservative idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF335JBI, ENCFF547MET, ENCFF566TGG, ENCFF780EPD 859567 ENCODE Processing Pipeline 4a1b74f5703be2b0bb5a616294557739 https://www.encodeproject.org/files/ENCFF883MPI/@@download/ENCFF883MPI.bed.gz mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF052CNA bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF883MPI 1646503 ENCODE Processing Pipeline 3b1715eceafa963656baacd546145a05 https://www.encodeproject.org/files/ENCFF052CNA/@@download/ENCFF052CNA.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF025VSJ bigWig signal p-value ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF171OVT, ENCFF379DPO, ENCFF541FCH 296193302 ENCODE Processing Pipeline e4ca9217f7beaa2a95e634f1eb34b54f https://www.encodeproject.org/files/ENCFF025VSJ/@@download/ENCFF025VSJ.bigWig mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF298ODC bigBed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF335JBI 12795406 ENCODE Processing Pipeline 3141867f1a1047729f64338e55e3c20e https://www.encodeproject.org/files/ENCFF298ODC/@@download/ENCFF298ODC.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF257MML bigBed narrowPeak peaks and background as input for IDR ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF566TGG 12561559 ENCODE Processing Pipeline a4955e8f19822362cae392c334d18e44 https://www.encodeproject.org/files/ENCFF257MML/@@download/ENCFF257MML.bigBed mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF002AQQ fastq reads ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 1 50 single-ended 1696888411 Bing Ren, UCSD e0ddf062aa20dce21650e43731d1f695 SRA:SRR3652016 https://www.encodeproject.org/files/ENCFF002AQQ/@@download/ENCFF002AQQ.fastq.gz Illumina HiSeq 2500 released insufficient read depth for broad peaks control ENCFF002AQR fastq reads ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 2269204447 Bing Ren, UCSD 488504d24e1be92b548c3fae40b4e2fe SRA:SRR3652015 https://www.encodeproject.org/files/ENCFF002AQR/@@download/ENCFF002AQR.fastq.gz Illumina HiSeq 2000 released insufficient read depth for broad peaks control ENCFF311SID bam unfiltered alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQQ, ENCFF806TVZ 1931245491 ENCODE Processing Pipeline 9da6fb59f7d917a761ca6eb718835606 https://www.encodeproject.org/files/ENCFF311SID/@@download/ENCFF311SID.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF467QZI bam unfiltered alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQR, ENCFF806TVZ 2493695196 ENCODE Processing Pipeline 9ebfdf3d03c88218346a1921e56ba279 https://www.encodeproject.org/files/ENCFF467QZI/@@download/ENCFF467QZI.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF148UUT bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQR, ENCFF806TVZ 1838536090 ENCODE Processing Pipeline cc69b8ddc9c486ef93d454f050b472d5 https://www.encodeproject.org/files/ENCFF148UUT/@@download/ENCFF148UUT.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF791KJV bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQQ, ENCFF806TVZ 1330327786 ENCODE Processing Pipeline 17ac2239bbc9d1ba1169515b4f2eff4d https://www.encodeproject.org/files/ENCFF791KJV/@@download/ENCFF791KJV.bam mm10-minimal archived insufficient read depth for broad peaks control ENCFF392VYN bam unfiltered alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQQ, ENCFF018NEO 1933562963 ENCODE Processing Pipeline 618253be7f8b170eea0aed6a37ee5aab https://www.encodeproject.org/files/ENCFF392VYN/@@download/ENCFF392VYN.bam mm10 released insufficient read depth for broad peaks control ENCFF318VVU bam unfiltered alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQR, ENCFF018NEO 2495776093 ENCODE Processing Pipeline fb7e050a5adacdd92ccc52c29fe7bba0 https://www.encodeproject.org/files/ENCFF318VVU/@@download/ENCFF318VVU.bam mm10 released insufficient read depth for broad peaks control ENCFF702TNM bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQQ, ENCFF018NEO 1329948211 ENCODE Processing Pipeline c3a22d37471027bfd54cf817b41cc6d9 https://www.encodeproject.org/files/ENCFF702TNM/@@download/ENCFF702TNM.bam mm10 released insufficient read depth for broad peaks control ENCFF453URD bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQR, ENCFF018NEO 1838171816 ENCODE Processing Pipeline e5aa6afd0884ef4e93422cb1f2f16aff https://www.encodeproject.org/files/ENCFF453URD/@@download/ENCFF453URD.bam mm10 released insufficient read depth for broad peaks control ENCFF893UNO bam unfiltered alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQQ, ENCFF018NEO 1576824431 ENCODE Processing Pipeline cbaec3c8916f926ea48c29228e83bb3f https://www.encodeproject.org/files/ENCFF893UNO/@@download/ENCFF893UNO.bam mm10 released insufficient read depth for broad peaks control ENCFF738XGE bam unfiltered alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQR, ENCFF018NEO 2050728015 ENCODE Processing Pipeline 67ff1b64c7cc65b9cec588820725bd89 https://www.encodeproject.org/files/ENCFF738XGE/@@download/ENCFF738XGE.bam mm10 released insufficient read depth for broad peaks control ENCFF955BDA bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQR, ENCFF018NEO 1414084817 ENCODE Processing Pipeline b311686c20c1b770c8d796acf2cda44c https://www.encodeproject.org/files/ENCFF955BDA/@@download/ENCFF955BDA.bam mm10 released insufficient read depth for broad peaks control ENCFF419KAT bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQQ, ENCFF018NEO 1019724251 ENCODE Processing Pipeline c80e213c1156467d46749ad2f2acce2a https://www.encodeproject.org/files/ENCFF419KAT/@@download/ENCFF419KAT.bam mm10 released insufficient read depth for broad peaks control ENCFF002ALJ fastq reads ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 1 36 single-ended 1295110547 Bing Ren, UCSD d971a511ed6ed77b20d938202be93596 SRA:SRR3653003 https://www.encodeproject.org/files/ENCFF002ALJ/@@download/ENCFF002ALJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AQT/ released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent control read length, low read length, moderate library complexity ENCFF002ALQ fastq reads ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 1 50 single-ended 1329417031 Bing Ren, UCSD 8874aa1581e6bf458db50f8140e864f5 SRA:SRR3653002 https://www.encodeproject.org/files/ENCFF002ALQ/@@download/ENCFF002ALQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AQX/ released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF146VVX bam alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ALJ, ENCFF806TVZ 772286849 ENCODE Processing Pipeline 2fd489c99b1c93d21f38af685955eef8 https://www.encodeproject.org/files/ENCFF146VVX/@@download/ENCFF146VVX.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF160WQL bam alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ALQ, ENCFF806TVZ 1161246013 ENCODE Processing Pipeline 995d1a6a509d8a211f52ddcd8a28b2bb https://www.encodeproject.org/files/ENCFF160WQL/@@download/ENCFF160WQL.bam mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF666KAG bed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF146VVX, ENCFF160WQL, ENCFF431MET 882649 ENCODE Processing Pipeline 2118906f375ad41cc215cc24e9402ffb https://www.encodeproject.org/files/ENCFF666KAG/@@download/ENCFF666KAG.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF960BYW bigBed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF588DJS 2639066 ENCODE Processing Pipeline 462a5a47782ff953612a3c62b0cf03c1 https://www.encodeproject.org/files/ENCFF960BYW/@@download/ENCFF960BYW.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF588DJS bed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF146VVX, ENCFF431MET 830949 ENCODE Processing Pipeline 216265f84947befd50c86e3c9b8664fc https://www.encodeproject.org/files/ENCFF588DJS/@@download/ENCFF588DJS.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF329VXG bigBed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF666KAG 2829293 ENCODE Processing Pipeline c1930a99d3a08d1ae0b519bcbd1c9ca1 https://www.encodeproject.org/files/ENCFF329VXG/@@download/ENCFF329VXG.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF118XVU bed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF160WQL, ENCFF431MET 784844 ENCODE Processing Pipeline 4a96f870d4c3343e15831b2328ccf465 https://www.encodeproject.org/files/ENCFF118XVU/@@download/ENCFF118XVU.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF178GCM bigBed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF118XVU 2537963 ENCODE Processing Pipeline def93c3e590619c7f63122a163ec7495 https://www.encodeproject.org/files/ENCFF178GCM/@@download/ENCFF178GCM.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF721PVJ bigWig signal p-value ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF146VVX, ENCFF431MET 497245792 ENCODE Processing Pipeline f8cf7c499cf22987628952989a40a05a https://www.encodeproject.org/files/ENCFF721PVJ/@@download/ENCFF721PVJ.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF313GCU bigWig signal p-value ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF160WQL, ENCFF431MET 505417299 ENCODE Processing Pipeline 443c6c55ea65ca24681ca30bfd436642 https://www.encodeproject.org/files/ENCFF313GCU/@@download/ENCFF313GCU.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF928ART bigWig signal p-value ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF146VVX, ENCFF160WQL, ENCFF431MET 643093300 ENCODE Processing Pipeline 360a0b8cd4f01a51c4df8e682fa29914 https://www.encodeproject.org/files/ENCFF928ART/@@download/ENCFF928ART.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF744OPE bigWig fold change over control ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF036DBQ, ENCFF146VVX, ENCFF431MET 422704125 ENCODE Processing Pipeline 71418740bfcf82034881ef53b1ace244 https://www.encodeproject.org/files/ENCFF744OPE/@@download/ENCFF744OPE.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF029LHD bigWig fold change over control ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF036DBQ, ENCFF160WQL, ENCFF431MET 456699219 ENCODE Processing Pipeline 86e521fd41964fd8270a7f1917dcd947 https://www.encodeproject.org/files/ENCFF029LHD/@@download/ENCFF029LHD.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF544IIQ bigWig fold change over control ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF036DBQ, ENCFF146VVX, ENCFF160WQL, ENCFF431MET 711116531 ENCODE Processing Pipeline f352deea3ab13edce0c1f8e8732062fb https://www.encodeproject.org/files/ENCFF544IIQ/@@download/ENCFF544IIQ.bigWig mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF891LSL bed narrowPeak replicated peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF118XVU, ENCFF588DJS, ENCFF666KAG 940071 ENCODE Processing Pipeline 83487a400955f0ac52eb96b230306195 https://www.encodeproject.org/files/ENCFF891LSL/@@download/ENCFF891LSL.bed.gz mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF507PYB bigBed narrowPeak replicated peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF891LSL 2245662 ENCODE Processing Pipeline 5165e6a133a96da083dae78acaed5ccd https://www.encodeproject.org/files/ENCFF507PYB/@@download/ENCFF507PYB.bigBed mm10-minimal archived mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF991HKZ bam unfiltered alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALJ, ENCFF018NEO 1423442993 ENCODE Processing Pipeline e8489ab4e08fbe53e5720527ea2787f1 https://www.encodeproject.org/files/ENCFF991HKZ/@@download/ENCFF991HKZ.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF800UWV bam unfiltered alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALQ, ENCFF018NEO 1272908418 ENCODE Processing Pipeline f6f8a98d61eb9a0cc76bbd7736cc333b https://www.encodeproject.org/files/ENCFF800UWV/@@download/ENCFF800UWV.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF433TDY bam alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALJ, ENCFF018NEO 772146292 ENCODE Processing Pipeline a9d2ec9ea442be4e1c19439e9d62025d https://www.encodeproject.org/files/ENCFF433TDY/@@download/ENCFF433TDY.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF720IYG bam alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALQ, ENCFF018NEO 916738914 ENCODE Processing Pipeline edc6592cfa5e7386f4ca3fb468600865 https://www.encodeproject.org/files/ENCFF720IYG/@@download/ENCFF720IYG.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF063HDW bed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF433TDY, ENCFF517WIG 831019 ENCODE Processing Pipeline 81ef0f0428dcfe8aade57a5b05e7175b https://www.encodeproject.org/files/ENCFF063HDW/@@download/ENCFF063HDW.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF319WCS bed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF720IYG 790992 ENCODE Processing Pipeline 3b60660102e9e27b87025738a31fcb7c https://www.encodeproject.org/files/ENCFF319WCS/@@download/ENCFF319WCS.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF079LJU bed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF433TDY, ENCFF517WIG, ENCFF720IYG 878172 ENCODE Processing Pipeline b57c7dbcb58f9aaaba258edff7600bc5 https://www.encodeproject.org/files/ENCFF079LJU/@@download/ENCFF079LJU.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF342AQZ bigBed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF063HDW 2627289 ENCODE Processing Pipeline 50be37623585bb288bd247e5db55aacc https://www.encodeproject.org/files/ENCFF342AQZ/@@download/ENCFF342AQZ.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF566TMU bigBed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF319WCS 2548703 ENCODE Processing Pipeline 73586ec7b6e9de94ff41f1b07bf9ab6e https://www.encodeproject.org/files/ENCFF566TMU/@@download/ENCFF566TMU.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF123ATR bigBed narrowPeak peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF079LJU 2801754 ENCODE Processing Pipeline ddbf415300865ac02b1623a3cd471702 https://www.encodeproject.org/files/ENCFF123ATR/@@download/ENCFF123ATR.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF008KJH bigWig signal p-value ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF433TDY, ENCFF517WIG 483821921 ENCODE Processing Pipeline d782455b7b13b5795193912052cc214d https://www.encodeproject.org/files/ENCFF008KJH/@@download/ENCFF008KJH.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF006SHB bigWig signal p-value ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF720IYG 514183840 ENCODE Processing Pipeline bf597fb28f1b72cf49685666dc3e9cf7 https://www.encodeproject.org/files/ENCFF006SHB/@@download/ENCFF006SHB.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF496VBO bigWig signal p-value ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF433TDY, ENCFF517WIG, ENCFF720IYG 696194799 ENCODE Processing Pipeline 009893866fdafa2de22b8af1ec40b587 https://www.encodeproject.org/files/ENCFF496VBO/@@download/ENCFF496VBO.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF839YBO bigWig fold change over control ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF088KYO, ENCFF433TDY, ENCFF517WIG 411379742 ENCODE Processing Pipeline 10192b01ae83a4fc13fe92d5a2ac84c8 https://www.encodeproject.org/files/ENCFF839YBO/@@download/ENCFF839YBO.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF683EAK bigWig fold change over control ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF088KYO, ENCFF517WIG, ENCFF720IYG 480303848 ENCODE Processing Pipeline 44ea0fab5ab1aad583e050320a765361 https://www.encodeproject.org/files/ENCFF683EAK/@@download/ENCFF683EAK.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF035FHN bigWig fold change over control ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF088KYO, ENCFF433TDY, ENCFF517WIG, ENCFF720IYG 691797258 ENCODE Processing Pipeline 2a0c77d8a03f559ba283a256e7c3615d https://www.encodeproject.org/files/ENCFF035FHN/@@download/ENCFF035FHN.bigWig mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF343VCH bed narrowPeak replicated peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF063HDW, ENCFF079LJU, ENCFF319WCS 939867 ENCODE Processing Pipeline e053ac40d7cdbd7f403308ad6f09be81 https://www.encodeproject.org/files/ENCFF343VCH/@@download/ENCFF343VCH.bed.gz mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF009ZLI bigBed narrowPeak replicated peaks ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1, 2 ENCFF343VCH 2227961 ENCODE Processing Pipeline ac4bbb2365765fe5656899ea7be70269 https://www.encodeproject.org/files/ENCFF009ZLI/@@download/ENCFF009ZLI.bigBed mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF001NOR bigBed narrowPeak peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001YIZ 625695 Michael Snyder, Stanford af95b4fcea4b3ac3f5e34e62ceddfd76 https://www.encodeproject.org/files/ENCFF001NOR/@@download/ENCFF001NOR.bigBed mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001NOS fastq reads ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 1 36 single-ended 907607812 Michael Snyder, Stanford da55e1e50bcf0187121c85ad587434f6 https://www.encodeproject.org/files/ENCFF001NOS/@@download/ENCFF001NOS.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001NOU fastq reads ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 1 36 single-ended 1296660609 Michael Snyder, Stanford 65ffe82aba3f17c49a4ec459bf16bb53 https://www.encodeproject.org/files/ENCFF001NOU/@@download/ENCFF001NOU.fastq.gz Illumina Genome Analyzer /files/ENCFF001NCF/, /files/ENCFF001NCH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001NOW bigWig signal ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOX, ENCFF001NOY 345179917 Michael Snyder, Stanford 1a0869388e4ba33b8a26c4676a038cda https://www.encodeproject.org/files/ENCFF001NOW/@@download/ENCFF001NOW.bigWig mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001NOX bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF001NOS 382364859 Michael Snyder, Stanford b76779103560d0159ab1c0e3a653c69d https://www.encodeproject.org/files/ENCFF001NOX/@@download/ENCFF001NOX.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001NOY bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF001NOU 559349891 Michael Snyder, Stanford 9f4b1048a0aee7a40e284f507741fc89 https://www.encodeproject.org/files/ENCFF001NOY/@@download/ENCFF001NOY.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001YIZ bed narrowPeak peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF001NOX, ENCFF001NOY 259874 Michael Snyder, Stanford 564bfe9c5a4a443d0695301ae01d97f4 https://www.encodeproject.org/files/ENCFF001YIZ/@@download/ENCFF001YIZ.bed.gz mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF096SMI bam unfiltered alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOU, ENCFF018NEO 1380088974 ENCODE Processing Pipeline 2e9d37882dfcf77e7adea90ad202a5c2 https://www.encodeproject.org/files/ENCFF096SMI/@@download/ENCFF096SMI.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF585WKE bam unfiltered alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOS, ENCFF018NEO 990974140 ENCODE Processing Pipeline 942ac93bdc387107e12bf1be4607fabe https://www.encodeproject.org/files/ENCFF585WKE/@@download/ENCFF585WKE.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF544KYC bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOS, ENCFF018NEO 570358979 ENCODE Processing Pipeline 3402504a9e11be493ad493dd309e93db https://www.encodeproject.org/files/ENCFF544KYC/@@download/ENCFF544KYC.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF318YRW bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOU, ENCFF018NEO 818401125 ENCODE Processing Pipeline d658374ad999a7d07ca03dfb70bd3cf6 https://www.encodeproject.org/files/ENCFF318YRW/@@download/ENCFF318YRW.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF729BYA bigWig signal p-value ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF544KYC 237139852 ENCODE Processing Pipeline aa21466ca8ef7a67cbc9d43c7d952c7d https://www.encodeproject.org/files/ENCFF729BYA/@@download/ENCFF729BYA.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF363EXK bed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF544KYC 4513739 ENCODE Processing Pipeline c4181f66c2493e5e92370e26292e7203 https://www.encodeproject.org/files/ENCFF363EXK/@@download/ENCFF363EXK.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF025OWG bigWig signal p-value ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF318YRW, ENCFF544KYC 327747823 ENCODE Processing Pipeline 62bd30952fed2f0cc155f4aeaa1643d5 https://www.encodeproject.org/files/ENCFF025OWG/@@download/ENCFF025OWG.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF494YES bed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF318YRW 4837974 ENCODE Processing Pipeline 057edac6c8f90fa7c856822a7a7240c6 https://www.encodeproject.org/files/ENCFF494YES/@@download/ENCFF494YES.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF072QBH bigBed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF561ZYK 10889788 ENCODE Processing Pipeline 6468147388873904f7c79c933fd55771 https://www.encodeproject.org/files/ENCFF072QBH/@@download/ENCFF072QBH.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF564JKI bigWig signal p-value ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF318YRW 309445116 ENCODE Processing Pipeline 9295a8becf50136ec0d1e3f475d514d8 https://www.encodeproject.org/files/ENCFF564JKI/@@download/ENCFF564JKI.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF994WMV bigWig fold change over control ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF171OVT, ENCFF544KYC 244645964 ENCODE Processing Pipeline 897311c3db6236197c64fa9028faa9c8 https://www.encodeproject.org/files/ENCFF994WMV/@@download/ENCFF994WMV.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF898AEA bigBed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 ENCFF363EXK 10231696 ENCODE Processing Pipeline 86b9ac6a40e13a5173f8e8613ecacd7e https://www.encodeproject.org/files/ENCFF898AEA/@@download/ENCFF898AEA.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF619QFB bigBed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF494YES 10580542 ENCODE Processing Pipeline be459453511b82f026d75258a8e1a6f7 https://www.encodeproject.org/files/ENCFF619QFB/@@download/ENCFF619QFB.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF946IGX bigBed narrowPeak conservative idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF083AYA 584356 ENCODE Processing Pipeline 8bc2d0abaa3e51846003297d1fe0c95e https://www.encodeproject.org/files/ENCFF946IGX/@@download/ENCFF946IGX.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF728CCM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF981ENW 664100 ENCODE Processing Pipeline 5177714c5b8e2dd897aa7f0fb5556f9d https://www.encodeproject.org/files/ENCFF728CCM/@@download/ENCFF728CCM.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF252OTG bigWig fold change over control ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF318YRW, ENCFF544KYC 519119745 ENCODE Processing Pipeline b63e0658ce9ceb491174221ff0e5e081 https://www.encodeproject.org/files/ENCFF252OTG/@@download/ENCFF252OTG.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF561ZYK bed narrowPeak peaks and background as input for IDR ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF171OVT, ENCFF318YRW, ENCFF544KYC 5414369 ENCODE Processing Pipeline 066a8935044aff2f1850959b87670741 https://www.encodeproject.org/files/ENCFF561ZYK/@@download/ENCFF561ZYK.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF083AYA bed narrowPeak conservative idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF363EXK, ENCFF494YES, ENCFF547MET, ENCFF561ZYK 263977 ENCODE Processing Pipeline e92048f09f93bbc7e5be605d49d28e61 https://www.encodeproject.org/files/ENCFF083AYA/@@download/ENCFF083AYA.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF981ENW bed narrowPeak optimal idr thresholded peaks ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1, 2 ENCFF363EXK, ENCFF494YES, ENCFF547MET, ENCFF561ZYK 312995 ENCODE Processing Pipeline 0ea0e673f1b8c32f2a837e8b4d37e448 https://www.encodeproject.org/files/ENCFF981ENW/@@download/ENCFF981ENW.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF778VWR bigWig fold change over control ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 ENCFF171OVT, ENCFF318YRW 338743082 ENCODE Processing Pipeline f1d2f34e8f9f3f1af43c7626007d787d https://www.encodeproject.org/files/ENCFF778VWR/@@download/ENCFF778VWR.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001NFH bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NFT 291066742 Michael Snyder, Stanford c3652e94e499928ce5ef2cad8c9532a0 https://www.encodeproject.org/files/ENCFF001NFH/@@download/ENCFF001NFH.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF001NFI bigBed narrowPeak peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001YHT 802283 Michael Snyder, Stanford a58778bece173c1a6984f31f30aa45d0 https://www.encodeproject.org/files/ENCFF001NFI/@@download/ENCFF001NFI.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF001NFJ bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NFQ 204448184 Michael Snyder, Stanford e72d68ea279da76e60b68c95c8ed4b76 https://www.encodeproject.org/files/ENCFF001NFJ/@@download/ENCFF001NFJ.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF001NFK bigWig signal ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFH, ENCFF001NFJ 221424048 Michael Snyder, Stanford 815b0d8f70af97397e7028279da2fe6c https://www.encodeproject.org/files/ENCFF001NFK/@@download/ENCFF001NFK.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF001NFQ fastq reads ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 814965430 Michael Snyder, Stanford f18f1f3e36fbb19e57e63f6ec8cf3632 https://www.encodeproject.org/files/ENCFF001NFQ/@@download/ENCFF001NFQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF001NFT fastq reads ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1024069586 Michael Snyder, Stanford 586b219a6344a877d53cf71f2c4f6f2f https://www.encodeproject.org/files/ENCFF001NFT/@@download/ENCFF001NFT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF001YHT bed narrowPeak peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF001NFH, ENCFF001NFJ 344945 Michael Snyder, Stanford 435423d851413016e9bf488c87164929 https://www.encodeproject.org/files/ENCFF001YHT/@@download/ENCFF001YHT.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF168MHD bam unfiltered alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFQ, ENCFF018NEO 906059713 ENCODE Processing Pipeline d0099a0b9b6316961a1e39bec07caf81 https://www.encodeproject.org/files/ENCFF168MHD/@@download/ENCFF168MHD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF606RGZ bam unfiltered alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFT, ENCFF018NEO 1133969821 ENCODE Processing Pipeline 4e259faa8d0251f17796d32956e7a704 https://www.encodeproject.org/files/ENCFF606RGZ/@@download/ENCFF606RGZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF669MCR bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFQ, ENCFF018NEO 459532369 ENCODE Processing Pipeline 599cb1a665e5f29c75507040d8af913e https://www.encodeproject.org/files/ENCFF669MCR/@@download/ENCFF669MCR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF518YCG bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFT, ENCFF018NEO 554384203 ENCODE Processing Pipeline b525a40bd24734b54db816d35a0c4d6f https://www.encodeproject.org/files/ENCFF518YCG/@@download/ENCFF518YCG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF947MIU bigWig signal p-value ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF518YCG 230192327 ENCODE Processing Pipeline d5bb0cb8e83f96f1e957263d7db4676c https://www.encodeproject.org/files/ENCFF947MIU/@@download/ENCFF947MIU.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF788XRX bigWig signal p-value ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF669MCR 187728388 ENCODE Processing Pipeline f676b1c872803eebf57446e02a2f24ae https://www.encodeproject.org/files/ENCFF788XRX/@@download/ENCFF788XRX.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF912BVT bigWig fold change over control ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF518YCG 205379508 ENCODE Processing Pipeline 6b893c56e077bf6cb1f8ede406cd95cb https://www.encodeproject.org/files/ENCFF912BVT/@@download/ENCFF912BVT.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF954JPC bigWig signal p-value ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF518YCG, ENCFF669MCR 254902260 ENCODE Processing Pipeline dff62b7a75793d5769c8e6f3cd5e64bc https://www.encodeproject.org/files/ENCFF954JPC/@@download/ENCFF954JPC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF447ZHW bigWig fold change over control ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF669MCR 172124387 ENCODE Processing Pipeline f42bf25525c0683200ab9908101bbbd4 https://www.encodeproject.org/files/ENCFF447ZHW/@@download/ENCFF447ZHW.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF944MUS bigWig fold change over control ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF518YCG, ENCFF669MCR 333089936 ENCODE Processing Pipeline cbb64a84764601001b3b1c2d86853728 https://www.encodeproject.org/files/ENCFF944MUS/@@download/ENCFF944MUS.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF525UBB bed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF339ZWC, ENCFF669MCR 3835648 ENCODE Processing Pipeline e9f93e26b4ac45879be578f2665142d8 https://www.encodeproject.org/files/ENCFF525UBB/@@download/ENCFF525UBB.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF379UVJ bed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF518YCG 4546313 ENCODE Processing Pipeline ff354041621eb255e591b19c2fc434f5 https://www.encodeproject.org/files/ENCFF379UVJ/@@download/ENCFF379UVJ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF037GCL bigBed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF999AHU 3297112 ENCODE Processing Pipeline 563141aa5501aba39d34b420bca2dcdf https://www.encodeproject.org/files/ENCFF037GCL/@@download/ENCFF037GCL.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF999AHU bed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF339ZWC, ENCFF518YCG, ENCFF669MCR 1500573 ENCODE Processing Pipeline fac03f9d6fd29865e31e9842bb804dc4 https://www.encodeproject.org/files/ENCFF999AHU/@@download/ENCFF999AHU.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF640FXG bigBed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF379UVJ 10162216 ENCODE Processing Pipeline a5627e4cf672472523cecd228985e5b8 https://www.encodeproject.org/files/ENCFF640FXG/@@download/ENCFF640FXG.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF966ZQK bigBed narrowPeak peaks and background as input for IDR ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 ENCFF525UBB 8993641 ENCODE Processing Pipeline 70e71929ae62505b8df7ea33274db68c https://www.encodeproject.org/files/ENCFF966ZQK/@@download/ENCFF966ZQK.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF680AFA bed narrowPeak conservative idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF379UVJ, ENCFF525UBB, ENCFF547MET, ENCFF999AHU 204575 ENCODE Processing Pipeline 2a37c3b611f96c9f721a3e947e594b92 https://www.encodeproject.org/files/ENCFF680AFA/@@download/ENCFF680AFA.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF949LUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF612GBQ 429966 ENCODE Processing Pipeline a60ea17759ff04c719329682acffaffa https://www.encodeproject.org/files/ENCFF949LUZ/@@download/ENCFF949LUZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF723RBB bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF680AFA 407619 ENCODE Processing Pipeline 0519bbc403bbaca70af029b103f0d681 https://www.encodeproject.org/files/ENCFF723RBB/@@download/ENCFF723RBB.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF612GBQ bed narrowPeak optimal idr thresholded peaks ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF379UVJ, ENCFF525UBB, ENCFF547MET, ENCFF999AHU 219439 ENCODE Processing Pipeline 7969d02e58f8bed5f6fe8bf47dc5db20 https://www.encodeproject.org/files/ENCFF612GBQ/@@download/ENCFF612GBQ.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF001NUG bam alignments ENCSR000EUD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rat-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NVE 666043707 Michael Snyder, Stanford 49ac3e23b160d34d59e165d09df48294 https://www.encodeproject.org/files/ENCFF001NUG/@@download/ENCFF001NUG.bam mm9 released low read length, mild to moderate bottlenecking ENCFF001NUH bigWig signal ENCSR000EUD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rat-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NUG 276828519 Michael Snyder, Stanford d0f8887e973ace51f0862a33cc30be6d https://www.encodeproject.org/files/ENCFF001NUH/@@download/ENCFF001NUH.bigWig mm9 released low read length, mild to moderate bottlenecking ENCFF001NVE fastq reads ENCSR000EUD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rat-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1908225166 Michael Snyder, Stanford ac546abf96fdabb373243613ab713aa6 https://www.encodeproject.org/files/ENCFF001NVE/@@download/ENCFF001NVE.fastq.gz Illumina Genome Analyzer II released low read length, mild to moderate bottlenecking ENCFF483UNM bam unfiltered alignments ENCSR000EUD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rat-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVE, ENCFF018NEO 2198588829 ENCODE Processing Pipeline 8fece57fba94b2b27573587f3e51e97a https://www.encodeproject.org/files/ENCFF483UNM/@@download/ENCFF483UNM.bam mm10 released low read length, mild to moderate bottlenecking ENCFF757ZBC bam alignments ENCSR000EUD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rat-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVE, ENCFF018NEO 1203328275 ENCODE Processing Pipeline ffc393c8c7b8c36b4a0655e52b09d01b https://www.encodeproject.org/files/ENCFF757ZBC/@@download/ENCFF757ZBC.bam mm10 released low read length, mild to moderate bottlenecking ENCFF529HKW fastq reads ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 814257699 Michael Snyder, Stanford 7c9995a3788521b417a445a7ae4b07a4 https://www.encodeproject.org/files/ENCFF529HKW/@@download/ENCFF529HKW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNP/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF819NZN bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF254ZVV 999752762 Michael Snyder, Stanford 7a77cd8f7a9ee318cb5755f52cc94131 https://www.encodeproject.org/files/ENCFF819NZN/@@download/ENCFF819NZN.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF530LPO bed narrowPeak peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF208VKG, ENCFF819NZN 118691 Michael Snyder, Stanford 6de636631da2e8eacd3549f7a9f8cd8a https://www.encodeproject.org/files/ENCFF530LPO/@@download/ENCFF530LPO.bed.gz mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF208VKG bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF529HKW 677279961 Michael Snyder, Stanford 620f705525b19f6d6bfe5be9c0fb8671 https://www.encodeproject.org/files/ENCFF208VKG/@@download/ENCFF208VKG.bam mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF254ZVV fastq reads ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 1199139199 Michael Snyder, Stanford 957dbdca3716f4959c5a102ae5e31a00 https://www.encodeproject.org/files/ENCFF254ZVV/@@download/ENCFF254ZVV.fastq.gz Illumina Genome Analyzer /files/ENCFF001NNN/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF154HRN bigBed narrowPeak peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF530LPO 319426 ENCODE Consortium 23eccd8dccf7af8f9ef78e75275ecfed https://www.encodeproject.org/files/ENCFF154HRN/@@download/ENCFF154HRN.bigBed mm9 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF865TRX bam unfiltered alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF529HKW 991162224 ENCODE Processing Pipeline 9deac835d52b5cfe086ca94c1208e171 https://www.encodeproject.org/files/ENCFF865TRX/@@download/ENCFF865TRX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF468PZK bam unfiltered alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF254ZVV 1421754325 ENCODE Processing Pipeline c73390274c523e2eb771f81b58bfd6b2 https://www.encodeproject.org/files/ENCFF468PZK/@@download/ENCFF468PZK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF941EUJ bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF529HKW 605535644 ENCODE Processing Pipeline 4e335fdcc8f6c040f798022553870625 https://www.encodeproject.org/files/ENCFF941EUJ/@@download/ENCFF941EUJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF044NRI bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF254ZVV 854358725 ENCODE Processing Pipeline e488a44bc42fcbecb8189751f7561a17 https://www.encodeproject.org/files/ENCFF044NRI/@@download/ENCFF044NRI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF739ZED bigWig signal p-value ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF044NRI, ENCFF074LDJ, ENCFF966YUS 473283940 ENCODE Processing Pipeline b263153d0c6578a353d1f76c106324ae https://www.encodeproject.org/files/ENCFF739ZED/@@download/ENCFF739ZED.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF330GUU bigWig signal p-value ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 437792348 ENCODE Processing Pipeline 1605221ac99b5d6608c3eb022bfdae3f https://www.encodeproject.org/files/ENCFF330GUU/@@download/ENCFF330GUU.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF355ARX bigWig signal p-value ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044NRI, ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 612106805 ENCODE Processing Pipeline 473971a22fa4a1f54820e80617abf528 https://www.encodeproject.org/files/ENCFF355ARX/@@download/ENCFF355ARX.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF071WHE bigWig fold change over control ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF044NRI, ENCFF074LDJ, ENCFF966YUS 444707532 ENCODE Processing Pipeline b51ee0df1f5fb0f42a7241f050232cd0 https://www.encodeproject.org/files/ENCFF071WHE/@@download/ENCFF071WHE.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF881UHV bigWig fold change over control ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 323370258 ENCODE Processing Pipeline 483e43d07741ec771b2c7e7e09ad83fc https://www.encodeproject.org/files/ENCFF881UHV/@@download/ENCFF881UHV.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF064FUW bigWig fold change over control ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044NRI, ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 621740907 ENCODE Processing Pipeline 67f61bb65a5683324edeff0c0195aaf6 https://www.encodeproject.org/files/ENCFF064FUW/@@download/ENCFF064FUW.bigWig mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF192FJH bed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF044NRI, ENCFF074LDJ, ENCFF966YUS 5149139 ENCODE Processing Pipeline 5a1fb99dc3b381ace11051635a63758f https://www.encodeproject.org/files/ENCFF192FJH/@@download/ENCFF192FJH.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF098AAD bed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 5300932 ENCODE Processing Pipeline 45b620343d860186b72e60161ea1a96d https://www.encodeproject.org/files/ENCFF098AAD/@@download/ENCFF098AAD.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF410WXS bed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF044NRI, ENCFF074LDJ, ENCFF941EUJ, ENCFF966YUS 5788410 ENCODE Processing Pipeline cd6e3581864828e9718be4f26c9d5a14 https://www.encodeproject.org/files/ENCFF410WXS/@@download/ENCFF410WXS.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF598PJP bigBed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 ENCFF192FJH 11174458 ENCODE Processing Pipeline ae16ff755f600d306fb635cf7dc616b5 https://www.encodeproject.org/files/ENCFF598PJP/@@download/ENCFF598PJP.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF998CUS bigBed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 ENCFF098AAD 13216627 ENCODE Processing Pipeline 0a258ae759c4099fd0d799e41a417788 https://www.encodeproject.org/files/ENCFF998CUS/@@download/ENCFF998CUS.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF466DTV bed narrowPeak conservative idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF098AAD, ENCFF192FJH, ENCFF410WXS, ENCFF547MET 140905 ENCODE Processing Pipeline 2509eb64b9ee185dd7a4a2b6ce950644 https://www.encodeproject.org/files/ENCFF466DTV/@@download/ENCFF466DTV.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF137JLJ bigBed narrowPeak peaks and background as input for IDR ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF410WXS 13422885 ENCODE Processing Pipeline de5f2fc7437b2f6cd84b7a6b3bf3f12f https://www.encodeproject.org/files/ENCFF137JLJ/@@download/ENCFF137JLJ.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF971MQY bigBed narrowPeak conservative idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF466DTV 318834 ENCODE Processing Pipeline e76dd7347f324ae33909be894ed46083 https://www.encodeproject.org/files/ENCFF971MQY/@@download/ENCFF971MQY.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF373CDN bed narrowPeak optimal idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF098AAD, ENCFF192FJH, ENCFF410WXS, ENCFF547MET 154253 ENCODE Processing Pipeline 699e3b424c443869f1f5158abbc4f39d https://www.encodeproject.org/files/ENCFF373CDN/@@download/ENCFF373CDN.bed.gz mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF805VMH bigBed narrowPeak optimal idr thresholded peaks ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF373CDN 338424 ENCODE Processing Pipeline 4dbec659dd1a4aef487625e9363bb9ad https://www.encodeproject.org/files/ENCFF805VMH/@@download/ENCFF805VMH.bigBed mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF443PSH fastq reads ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 1 36 single-ended 674211387 Michael Snyder, Stanford 647e898a97f962f7011fa0cbaffcfac8 https://www.encodeproject.org/files/ENCFF443PSH/@@download/ENCFF443PSH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF319ABF fastq reads ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 1 36 single-ended 834889750 Michael Snyder, Stanford b5445b379112081796497099f3836cce https://www.encodeproject.org/files/ENCFF319ABF/@@download/ENCFF319ABF.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF052XAJ bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF443PSH 656932299 Michael Snyder, Stanford 8dfe1b7f8e0bdf8130ada1b19d80a3f2 https://www.encodeproject.org/files/ENCFF052XAJ/@@download/ENCFF052XAJ.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF540GGK bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF319ABF 800635962 Michael Snyder, Stanford ab78c5c8ccd736ebba54fb0a3b4a4e75 https://www.encodeproject.org/files/ENCFF540GGK/@@download/ENCFF540GGK.bam mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF148PLM bed narrowPeak peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF052XAJ, ENCFF540GGK 445416 Michael Snyder, Stanford 3d702a20f7ea9a049940e9064bea01dd https://www.encodeproject.org/files/ENCFF148PLM/@@download/ENCFF148PLM.bed.gz mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF259NQC bigBed narrowPeak peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF148PLM 950646 ENCODE Consortium f8503c319c9f68c6ff3d7257d889c6b3 https://www.encodeproject.org/files/ENCFF259NQC/@@download/ENCFF259NQC.bigBed mm9 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF391DJB bam unfiltered alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF443PSH 910205267 ENCODE Processing Pipeline d581471ed1b0681aad4fafdf852cfda5 https://www.encodeproject.org/files/ENCFF391DJB/@@download/ENCFF391DJB.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF806JZI bam unfiltered alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF319ABF 1087082338 ENCODE Processing Pipeline 762338c22eb2d6e2664f45e75e3f51c1 https://www.encodeproject.org/files/ENCFF806JZI/@@download/ENCFF806JZI.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF025IEG bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF319ABF 677545648 ENCODE Processing Pipeline 9a1d57802907fc3db32fa8ee1ad4e863 https://www.encodeproject.org/files/ENCFF025IEG/@@download/ENCFF025IEG.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF678DXL bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF443PSH 570828135 ENCODE Processing Pipeline b641bb9c6956e42b8e16e550b1dd1935 https://www.encodeproject.org/files/ENCFF678DXL/@@download/ENCFF678DXL.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF538EWO bigWig signal p-value ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF025IEG, ENCFF339ZWC 239270968 ENCODE Processing Pipeline 9c380e671a0afce4c32bb0bd6c444706 https://www.encodeproject.org/files/ENCFF538EWO/@@download/ENCFF538EWO.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF093ARP bigWig signal p-value ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF678DXL 240118245 ENCODE Processing Pipeline ee8a3ae11ee9e32757da50164e2e5722 https://www.encodeproject.org/files/ENCFF093ARP/@@download/ENCFF093ARP.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF280SPD bigWig signal p-value ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF025IEG, ENCFF339ZWC, ENCFF678DXL 208521779 ENCODE Processing Pipeline c66ef1e5a47f13b0d29713ce454f70c7 https://www.encodeproject.org/files/ENCFF280SPD/@@download/ENCFF280SPD.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF145HRX bigWig fold change over control ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF678DXL 246623980 ENCODE Processing Pipeline e836d3576279ba408467df9d1073e807 https://www.encodeproject.org/files/ENCFF145HRX/@@download/ENCFF145HRX.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF199YQB bigWig fold change over control ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF025IEG, ENCFF339ZWC, ENCFF678DXL 438509849 ENCODE Processing Pipeline 5ec5200ad3ebceac9dcf386f8e890354 https://www.encodeproject.org/files/ENCFF199YQB/@@download/ENCFF199YQB.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF704CDO bigWig fold change over control ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF025IEG, ENCFF339ZWC 271480597 ENCODE Processing Pipeline 046942028310bb2b2e82f0b9d62acc62 https://www.encodeproject.org/files/ENCFF704CDO/@@download/ENCFF704CDO.bigWig mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF596FSM bed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF339ZWC, ENCFF678DXL 4992511 ENCODE Processing Pipeline 5cb4ac4717aaf65cca672b7644ca9df4 https://www.encodeproject.org/files/ENCFF596FSM/@@download/ENCFF596FSM.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF498DFC bed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF025IEG, ENCFF339ZWC, ENCFF678DXL 5883179 ENCODE Processing Pipeline 3143289aa86630fd8b6f745e2365a2cb https://www.encodeproject.org/files/ENCFF498DFC/@@download/ENCFF498DFC.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF704GUT bed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF025IEG, ENCFF339ZWC 5280894 ENCODE Processing Pipeline 8aebba7ba48a1431e7ba1121fd6ef6aa https://www.encodeproject.org/files/ENCFF704GUT/@@download/ENCFF704GUT.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF315WGV bigBed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 ENCFF596FSM 12560901 ENCODE Processing Pipeline ff04c71f8b9abc5f111501340b08cfba https://www.encodeproject.org/files/ENCFF315WGV/@@download/ENCFF315WGV.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF849PKA bigBed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF498DFC 12911113 ENCODE Processing Pipeline f8af56bf18bf456845dc44f19037bb76 https://www.encodeproject.org/files/ENCFF849PKA/@@download/ENCFF849PKA.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF205UNE bigBed narrowPeak peaks and background as input for IDR ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 ENCFF704GUT 12625118 ENCODE Processing Pipeline 000e8a015b74ac886cae303ba128e247 https://www.encodeproject.org/files/ENCFF205UNE/@@download/ENCFF205UNE.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF647QKO bed narrowPeak conservative idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF498DFC, ENCFF547MET, ENCFF596FSM, ENCFF704GUT 516833 ENCODE Processing Pipeline c2badd4d0f5ca99bbe083652f2715364 https://www.encodeproject.org/files/ENCFF647QKO/@@download/ENCFF647QKO.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF301RZK bigBed narrowPeak conservative idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF647QKO 957681 ENCODE Processing Pipeline 2abbbf1cccfc07e45166595e4e71e194 https://www.encodeproject.org/files/ENCFF301RZK/@@download/ENCFF301RZK.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF062DPL bed narrowPeak optimal idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF498DFC, ENCFF547MET, ENCFF596FSM, ENCFF704GUT 573775 ENCODE Processing Pipeline 140af3c0c17233516d059ea23a421922 https://www.encodeproject.org/files/ENCFF062DPL/@@download/ENCFF062DPL.bed.gz mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF479SFJ bigBed narrowPeak optimal idr thresholded peaks ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1, 2 ENCFF062DPL 1043622 ENCODE Processing Pipeline 19f37e6944b2ca78d69250e28719478c https://www.encodeproject.org/files/ENCFF479SFJ/@@download/ENCFF479SFJ.bigBed mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF001LNZ bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LOK 565056127 Bing Ren, UCSD 11590909d37bc04e7d10f3ac35a07545 https://www.encodeproject.org/files/ENCFF001LNZ/@@download/ENCFF001LNZ.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LOA bigBed broadPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001YAQ 909952 Bing Ren, UCSD fc925ec66dbbfef804d8fde8053bd395 https://www.encodeproject.org/files/ENCFF001LOA/@@download/ENCFF001LOA.bigBed mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LOB bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LOI 561608618 Bing Ren, UCSD b9e5c8f63ea7b618e632b60984a2be3d https://www.encodeproject.org/files/ENCFF001LOB/@@download/ENCFF001LOB.bam mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LOD bigWig signal ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNZ, ENCFF001LOB 59512875 Bing Ren, UCSD d5d814db5fdea317e9ff40f270ba122b https://www.encodeproject.org/files/ENCFF001LOD/@@download/ENCFF001LOD.bigWig mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LOI fastq reads ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 649652575 Bing Ren, UCSD cb88968f80b51bba208252174b3b589e https://www.encodeproject.org/files/ENCFF001LOI/@@download/ENCFF001LOI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPS/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF001LOK fastq reads ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 905969306 Bing Ren, UCSD 34e72055a6a1a355cad06ab2d83480b7 https://www.encodeproject.org/files/ENCFF001LOK/@@download/ENCFF001LOK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPR/ released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF001YAQ bed broadPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF001LNZ, ENCFF001LOB 551538 Bing Ren, UCSD 4dac8569e3d3ebb4e19f36ab633d10dc https://www.encodeproject.org/files/ENCFF001YAQ/@@download/ENCFF001YAQ.bed.gz mm9 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF142CEK bam unfiltered alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 707035481 ENCODE Processing Pipeline 0783a344e320c60d367ad5ceed01dedc https://www.encodeproject.org/files/ENCFF142CEK/@@download/ENCFF142CEK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF564ZUE bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 250447605 ENCODE Processing Pipeline d36a0e2f8a43c21b3fd3ff706d871243 https://www.encodeproject.org/files/ENCFF564ZUE/@@download/ENCFF564ZUE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF766YMS bam unfiltered alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 928976207 ENCODE Processing Pipeline fe8c2545a5c3848464a6745f6ca644ea https://www.encodeproject.org/files/ENCFF766YMS/@@download/ENCFF766YMS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF464NFI bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 267730430 ENCODE Processing Pipeline c0854275972f38d9223651eb1abe5fa7 https://www.encodeproject.org/files/ENCFF464NFI/@@download/ENCFF464NFI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF894SWO bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 278513438 ENCODE Processing Pipeline feb45c62e63aa32260eeeeb2f0137dca https://www.encodeproject.org/files/ENCFF894SWO/@@download/ENCFF894SWO.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF700VXC bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 284687072 ENCODE Processing Pipeline 8928c9db676472006c23e2fa966223ca https://www.encodeproject.org/files/ENCFF700VXC/@@download/ENCFF700VXC.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF843IPI bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 480252840 ENCODE Processing Pipeline 3792f8964fb5677fc69eb2f28ca3c373 https://www.encodeproject.org/files/ENCFF843IPI/@@download/ENCFF843IPI.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF728YFM bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 107190297 ENCODE Processing Pipeline 79f0aaf0225d124397ebcb4a2753efbc https://www.encodeproject.org/files/ENCFF728YFM/@@download/ENCFF728YFM.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF929APL bed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 1781061 ENCODE Processing Pipeline 1732037d3ed7ba99200276248d57486a https://www.encodeproject.org/files/ENCFF929APL/@@download/ENCFF929APL.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF507FHH bed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 4624462 ENCODE Processing Pipeline c284a35dbfc8f1a27f6aebf609441a9e https://www.encodeproject.org/files/ENCFF507FHH/@@download/ENCFF507FHH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF959ZMQ bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 118504034 ENCODE Processing Pipeline 610618a010540066f8d1ccdd5ce553da https://www.encodeproject.org/files/ENCFF959ZMQ/@@download/ENCFF959ZMQ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF508GAH bed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 2628091 ENCODE Processing Pipeline 588dcae8b8a099763bc52c5f7fde1d56 https://www.encodeproject.org/files/ENCFF508GAH/@@download/ENCFF508GAH.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF432JCZ bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 269976331 ENCODE Processing Pipeline eaa3153f733ccaf34e23b8f96f0841ef https://www.encodeproject.org/files/ENCFF432JCZ/@@download/ENCFF432JCZ.bigWig mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF819GAZ bigBed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 ENCFF929APL 3870246 ENCODE Processing Pipeline 6c42293308705144b0100ee599cff8aa https://www.encodeproject.org/files/ENCFF819GAZ/@@download/ENCFF819GAZ.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF989CFR bigBed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH 11201788 ENCODE Processing Pipeline e330bc04da602025caf2736646013971 https://www.encodeproject.org/files/ENCFF989CFR/@@download/ENCFF989CFR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF551CDR bigBed narrowPeak peaks and background as input for IDR ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 ENCFF508GAH 5773014 ENCODE Processing Pipeline fcac4664542d2c59865fe372d15207f1 https://www.encodeproject.org/files/ENCFF551CDR/@@download/ENCFF551CDR.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF549BWV bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF940SWY 472750 ENCODE Processing Pipeline a895b765542d5740e8d728714620ccf4 https://www.encodeproject.org/files/ENCFF549BWV/@@download/ENCFF549BWV.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF100YLI bed narrowPeak optimal idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH, ENCFF508GAH, ENCFF547MET, ENCFF929APL 345379 ENCODE Processing Pipeline 20bcde137a04241c61036572d6657bf7 https://www.encodeproject.org/files/ENCFF100YLI/@@download/ENCFF100YLI.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF551CRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF100YLI 580367 ENCODE Processing Pipeline f7face1856a342cabe651dd90b2c0e87 https://www.encodeproject.org/files/ENCFF551CRD/@@download/ENCFF551CRD.bigBed mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF940SWY bed narrowPeak conservative idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH, ENCFF508GAH, ENCFF547MET, ENCFF929APL 263244 ENCODE Processing Pipeline 42888e9ad50c71031e414167a80f9724 https://www.encodeproject.org/files/ENCFF940SWY/@@download/ENCFF940SWY.bed.gz mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF001NMF bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NMH 493207554 Michael Snyder, Stanford d47a3f3c7331bad6f43f86123c740242 https://www.encodeproject.org/files/ENCFF001NMF/@@download/ENCFF001NMF.bam mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMG bigBed narrowPeak peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001YIS 319146 Michael Snyder, Stanford 2050682bc96ce5bfcb88088c5bc68909 https://www.encodeproject.org/files/ENCFF001NMG/@@download/ENCFF001NMG.bigBed mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMH fastq reads ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 942945902 Michael Snyder, Stanford f9ef097048d11fb47b7092b68f0fa3fa https://www.encodeproject.org/files/ENCFF001NMH/@@download/ENCFF001NMH.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMJ fastq reads ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 837366140 Michael Snyder, Stanford 6fd3c1a97f67a76cd7a242ff5a368375 https://www.encodeproject.org/files/ENCFF001NMJ/@@download/ENCFF001NMJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001NIM/ released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NML bigWig signal ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NMF, ENCFF001NMM 156584855 Michael Snyder, Stanford a3a1244ff11200bf9310b23e5106068d https://www.encodeproject.org/files/ENCFF001NML/@@download/ENCFF001NML.bigWig mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001NMM bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NMJ 454393823 Michael Snyder, Stanford d24d390eedbb2d2cbf44bd1fd3952f8a https://www.encodeproject.org/files/ENCFF001NMM/@@download/ENCFF001NMM.bam mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001YIS bed narrowPeak peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF001NMF, ENCFF001NMM 131058 Michael Snyder, Stanford 9927430ebe79693f704c28f129a60df7 https://www.encodeproject.org/files/ENCFF001YIS/@@download/ENCFF001YIS.bed.gz mm9 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF979JBP bam unfiltered alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NMJ, ENCFF018NEO 920500470 ENCODE Processing Pipeline 0f805c07b15d68370c3dd2ec2fb1e8a1 https://www.encodeproject.org/files/ENCFF979JBP/@@download/ENCFF979JBP.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF140LPA bam unfiltered alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NMH, ENCFF018NEO 1041726052 ENCODE Processing Pipeline e90468304f3d8a7053a95971ad133d57 https://www.encodeproject.org/files/ENCFF140LPA/@@download/ENCFF140LPA.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF482OKL bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NMJ, ENCFF018NEO 626157010 ENCODE Processing Pipeline 368823dda68040e51560f087cb0bd8aa https://www.encodeproject.org/files/ENCFF482OKL/@@download/ENCFF482OKL.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF700OOX bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NMH, ENCFF018NEO 693314323 ENCODE Processing Pipeline da950b7a3e3aaff8a0d2aba01c5b1356 https://www.encodeproject.org/files/ENCFF700OOX/@@download/ENCFF700OOX.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF080LEX bigWig signal p-value ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF482OKL 226892136 ENCODE Processing Pipeline efbe405842febb2c99cdd9ce3e84f145 https://www.encodeproject.org/files/ENCFF080LEX/@@download/ENCFF080LEX.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF652IYI bigWig signal p-value ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF700OOX 234778111 ENCODE Processing Pipeline 97bf8e855ef18bbcbbcdb6af679a1ccd https://www.encodeproject.org/files/ENCFF652IYI/@@download/ENCFF652IYI.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF717ITH bigWig fold change over control ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF482OKL 262480749 ENCODE Processing Pipeline edb557ec7a92f467d39ba5a449aa69c4 https://www.encodeproject.org/files/ENCFF717ITH/@@download/ENCFF717ITH.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF121UFB bigWig signal p-value ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF482OKL, ENCFF700OOX 215137572 ENCODE Processing Pipeline e73d36fb9b514d1925bf46500003c883 https://www.encodeproject.org/files/ENCFF121UFB/@@download/ENCFF121UFB.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF494JDF bigWig fold change over control ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF700OOX 285550173 ENCODE Processing Pipeline 24dc6789b9c5562587ff3a2765a18c24 https://www.encodeproject.org/files/ENCFF494JDF/@@download/ENCFF494JDF.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF270QCB bed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF339ZWC, ENCFF700OOX 940014 ENCODE Processing Pipeline 3246ace6cc24398181d71ddb2096bda3 https://www.encodeproject.org/files/ENCFF270QCB/@@download/ENCFF270QCB.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF077OGZ bed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF482OKL, ENCFF700OOX 5400807 ENCODE Processing Pipeline aec09d12b86d494a58d7fa9db8bcbca8 https://www.encodeproject.org/files/ENCFF077OGZ/@@download/ENCFF077OGZ.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF411YYG bigWig fold change over control ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF339ZWC, ENCFF482OKL, ENCFF700OOX 471881101 ENCODE Processing Pipeline 80058253ac9ed94f4ac30cadfbd8157e https://www.encodeproject.org/files/ENCFF411YYG/@@download/ENCFF411YYG.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF696QMG bigBed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 ENCFF270QCB 2126869 ENCODE Processing Pipeline 6f365459fb61aa452bcfdb31e5d2f32b https://www.encodeproject.org/files/ENCFF696QMG/@@download/ENCFF696QMG.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF847IJD bigBed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF474CML 425155 ENCODE Processing Pipeline 13a7db04bd165eb0183e089055c28c1b https://www.encodeproject.org/files/ENCFF847IJD/@@download/ENCFF847IJD.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF135YRM bigBed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF077OGZ 12921922 ENCODE Processing Pipeline ff0a5313751560779653b7b6445a960f https://www.encodeproject.org/files/ENCFF135YRM/@@download/ENCFF135YRM.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF474CML bed narrowPeak peaks and background as input for IDR ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 ENCFF339ZWC, ENCFF482OKL 160727 ENCODE Processing Pipeline e5a0e063c77b7eb9b27a1ad32019da17 https://www.encodeproject.org/files/ENCFF474CML/@@download/ENCFF474CML.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF973JIT bed narrowPeak conservative idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF077OGZ, ENCFF270QCB, ENCFF474CML, ENCFF547MET 31166 ENCODE Processing Pipeline 54a7e0126173772b2d9291ba1dab6dbe https://www.encodeproject.org/files/ENCFF973JIT/@@download/ENCFF973JIT.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF035UVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF501HSN 127889 ENCODE Processing Pipeline 0a91737feec12264fe643bf480bc6f23 https://www.encodeproject.org/files/ENCFF035UVH/@@download/ENCFF035UVH.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF501HSN bed narrowPeak optimal idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF077OGZ, ENCFF270QCB, ENCFF474CML, ENCFF547MET 44991 ENCODE Processing Pipeline 01b18e76103506fd84182c77d437cbfa https://www.encodeproject.org/files/ENCFF501HSN/@@download/ENCFF501HSN.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF414IBM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF973JIT 107330 ENCODE Processing Pipeline ab6fb486eb0a2aa03917c7c749c35208 https://www.encodeproject.org/files/ENCFF414IBM/@@download/ENCFF414IBM.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF001MOF bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF001MOI 783524607 Ross Hardison, PennState 7d0c91e460584cf4aab282839cbde458 https://www.encodeproject.org/files/ENCFF001MOF/@@download/ENCFF001MOF.bam mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOG bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF001MOP 699044289 Ross Hardison, PennState 31e6c4a4c7fc57ecb66db13a5a3d0363 https://www.encodeproject.org/files/ENCFF001MOG/@@download/ENCFF001MOG.bam mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOH bigBed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE ENCFF001YFA 179661 Ross Hardison, PennState c5e6d1f5cd3660215898a69ef832048e https://www.encodeproject.org/files/ENCFF001MOH/@@download/ENCFF001MOH.bigBed mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOI fastq reads ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 607479209 Ross Hardison, PennState 03208b484979faeebc8888ef15c6f8cb https://www.encodeproject.org/files/ENCFF001MOI/@@download/ENCFF001MOI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOJ bigBed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFB 68473 Ross Hardison, PennState bea2622d0b39d0536e4b23e7ebdef9bb https://www.encodeproject.org/files/ENCFF001MOJ/@@download/ENCFF001MOJ.bigBed mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOK bigBed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFC 216982 Ross Hardison, PennState 90f0b7d08c932b55c4ed1ad3c7a0edcb https://www.encodeproject.org/files/ENCFF001MOK/@@download/ENCFF001MOK.bigBed mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001MOL bigWig signal ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 1368092324 Ross Hardison, PennState aae34ec4e7ec0f60ce072b61ae1b2fba https://www.encodeproject.org/files/ENCFF001MOL/@@download/ENCFF001MOL.bigWig mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MON bigWig signal ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 1552492611 Ross Hardison, PennState 0b387dec2bec27dfb39ab125378fb304 https://www.encodeproject.org/files/ENCFF001MON/@@download/ENCFF001MON.bigWig mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MOO bigWig signal ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2612166562 Ross Hardison, PennState c6b8582ab304fca82aa1f5611159111c https://www.encodeproject.org/files/ENCFF001MOO/@@download/ENCFF001MOO.bigWig mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001MOP fastq reads ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 598855193 Ross Hardison, PennState e83b2b76f35ed6c0574e5a7ae07a6a99 https://www.encodeproject.org/files/ENCFF001MOP/@@download/ENCFF001MOP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released borderline replicate concordance, low read length, inconsistent platforms, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF001YFA bed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 68791 Ross Hardison, PennState fa1932b0fd15ca38c6c1022564faefe1 https://www.encodeproject.org/files/ENCFF001YFA/@@download/ENCFF001YFA.bed.gz mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YFB bed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 1 16749 Ross Hardison, PennState 05950aefda89deec473b3282a62188be https://www.encodeproject.org/files/ENCFF001YFB/@@download/ENCFF001YFB.bed.gz mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF001YFC bed broadPeak peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 1 93335 Ross Hardison, PennState 07a171d28430b1b3805293194352d642 https://www.encodeproject.org/files/ENCFF001YFC/@@download/ENCFF001YFC.bed.gz mm9 archived borderline replicate concordance, low read length, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF880YQN bam unfiltered alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOP, ENCFF018NEO 737005599 ENCODE Processing Pipeline bd169343d929f486775abd12d428ab7e https://www.encodeproject.org/files/ENCFF880YQN/@@download/ENCFF880YQN.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF545TSO bam unfiltered alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOI, ENCFF018NEO 826402795 ENCODE Processing Pipeline 0bbb324a42eb8ceee6ae6564d83c900f https://www.encodeproject.org/files/ENCFF545TSO/@@download/ENCFF545TSO.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF700PLH bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOP, ENCFF018NEO 494259929 ENCODE Processing Pipeline c902a77cf7f8a330e8e0b4a6ef93b795 https://www.encodeproject.org/files/ENCFF700PLH/@@download/ENCFF700PLH.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF825JNS bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOI, ENCFF018NEO 588169998 ENCODE Processing Pipeline 0bae69cb610c88d8a8da065ef0d926a6 https://www.encodeproject.org/files/ENCFF825JNS/@@download/ENCFF825JNS.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF824DOT bigWig signal p-value ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF700PLH, ENCFF984QUA 910927225 ENCODE Processing Pipeline d3d53fd920f97dbe0c0b490f7e7f681b https://www.encodeproject.org/files/ENCFF824DOT/@@download/ENCFF824DOT.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF893DBP bigWig signal p-value ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF825JNS, ENCFF984QUA 950900592 ENCODE Processing Pipeline d4d926910a915fdecf5d56ce5c1c1664 https://www.encodeproject.org/files/ENCFF893DBP/@@download/ENCFF893DBP.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF840EKX bed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF700PLH, ENCFF984QUA 4969567 ENCODE Processing Pipeline b49cc8e94185ee2c0210e34fb5810993 https://www.encodeproject.org/files/ENCFF840EKX/@@download/ENCFF840EKX.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF689QOZ bigWig fold change over control ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF825JNS, ENCFF984QUA 550437357 ENCODE Processing Pipeline e3d031037fc7ff75952621544caa4ebf https://www.encodeproject.org/files/ENCFF689QOZ/@@download/ENCFF689QOZ.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF630HUU bigWig fold change over control ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF700PLH, ENCFF825JNS, ENCFF984QUA 823806386 ENCODE Processing Pipeline d4e3cbea813b6cf612bf3f702f2cbcfc https://www.encodeproject.org/files/ENCFF630HUU/@@download/ENCFF630HUU.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF746OCU bigBed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF126SBW 10969845 ENCODE Processing Pipeline 304a09d69b4e470584e21f97bd0b0376 https://www.encodeproject.org/files/ENCFF746OCU/@@download/ENCFF746OCU.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF221YKU bigBed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF447ABB 11186472 ENCODE Processing Pipeline e284a0fd90b199844d6532a725b71602 https://www.encodeproject.org/files/ENCFF221YKU/@@download/ENCFF221YKU.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF521SJA bigBed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF840EKX 10458386 ENCODE Processing Pipeline f68c12a08242948783cae70601494b64 https://www.encodeproject.org/files/ENCFF521SJA/@@download/ENCFF521SJA.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF205GXD bed narrowPeak conservative idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF126SBW, ENCFF447ABB, ENCFF547MET, ENCFF840EKX 7642 ENCODE Processing Pipeline 440ce73d41f637807b5d079e82a04790 https://www.encodeproject.org/files/ENCFF205GXD/@@download/ENCFF205GXD.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF932GFP bigWig fold change over control ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF700PLH, ENCFF984QUA 473350474 ENCODE Processing Pipeline 668aac2c07b7cbe95a5995f886c6ea2d https://www.encodeproject.org/files/ENCFF932GFP/@@download/ENCFF932GFP.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF126SBW bed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF825JNS, ENCFF984QUA 5185523 ENCODE Processing Pipeline a73d42eeca1d9cedb30ca4a6ef137bda https://www.encodeproject.org/files/ENCFF126SBW/@@download/ENCFF126SBW.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF755BWA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF205GXD 56671 ENCODE Processing Pipeline 5597e26b2523f701dc891abf96ba7bdb https://www.encodeproject.org/files/ENCFF755BWA/@@download/ENCFF755BWA.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF037ZUL bigWig signal p-value ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF700PLH, ENCFF825JNS, ENCFF984QUA 953981268 ENCODE Processing Pipeline e94781590905de63018ebfea60b5a287 https://www.encodeproject.org/files/ENCFF037ZUL/@@download/ENCFF037ZUL.bigWig mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF447ABB bed narrowPeak peaks and background as input for IDR ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF700PLH, ENCFF825JNS, ENCFF984QUA 6134527 ENCODE Processing Pipeline 04af7237e7d4e4f2b3adc41e8d758890 https://www.encodeproject.org/files/ENCFF447ABB/@@download/ENCFF447ABB.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF332ZVZ bed narrowPeak optimal idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF126SBW, ENCFF447ABB, ENCFF547MET, ENCFF840EKX 10843 ENCODE Processing Pipeline 2146de6de4c8fabcba289bdd928de53c https://www.encodeproject.org/files/ENCFF332ZVZ/@@download/ENCFF332ZVZ.bed.gz mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF793RUA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF332ZVZ 61712 ENCODE Processing Pipeline 00a1f4924d9bdbe48c4c94894652720e https://www.encodeproject.org/files/ENCFF793RUA/@@download/ENCFF793RUA.bigBed mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF927ZWX fastq reads ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 1 50 single-ended 3239930389 Bing Ren, UCSD cf0dff9c985e132c79cc1a20d8c7a1be SRA:SRR3651373 https://www.encodeproject.org/files/ENCFF927ZWX/@@download/ENCFF927ZWX.fastq.gz Illumina HiSeq 2000 /files/ENCFF618USE/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF461IFM fastq reads ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 1 50 single-ended 2656861429 Bing Ren, UCSD db90883ffcf786a47b6c99d4091615a6 SRA:SRR3651371 https://www.encodeproject.org/files/ENCFF461IFM/@@download/ENCFF461IFM.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF918OCJ fastq reads ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 2 50 single-ended 251097754 Bing Ren, UCSD 886caa647c7d910afa08f3f4a143785e SRA:SRR3651372 https://www.encodeproject.org/files/ENCFF918OCJ/@@download/ENCFF918OCJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF091XIS/, /files/ENCFF747OOK/ released inconsistent platforms sequencing runs labeled as technical replicates ENCFF037XMC bam alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF461IFM, ENCFF806TVZ, ENCFF918OCJ 2662196818 ENCODE Processing Pipeline 8edb00ade12ee31ac4d6628879ddcd2a https://www.encodeproject.org/files/ENCFF037XMC/@@download/ENCFF037XMC.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF797XUR bam alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF806TVZ, ENCFF927ZWX 2884457799 ENCODE Processing Pipeline e5a4f70cfa0b6db2adf68d5424555dd9 https://www.encodeproject.org/files/ENCFF797XUR/@@download/ENCFF797XUR.bam mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF992KFM bed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XMC, ENCFF087UEM, ENCFF478WUL 2883037 ENCODE Processing Pipeline e1ed940baca31a270dbc9f76e0f8e45e https://www.encodeproject.org/files/ENCFF992KFM/@@download/ENCFF992KFM.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF913IWS bed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XMC, ENCFF087UEM, ENCFF478WUL, ENCFF797XUR 2689189 ENCODE Processing Pipeline 5a5e765cdea1b05cf928f93d2885218e https://www.encodeproject.org/files/ENCFF913IWS/@@download/ENCFF913IWS.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF705GPW bed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF797XUR 3213927 ENCODE Processing Pipeline 9190fdc14f93fe224c2a551feda37a79 https://www.encodeproject.org/files/ENCFF705GPW/@@download/ENCFF705GPW.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF579AZI bigBed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF705GPW 6496882 ENCODE Processing Pipeline 2e7eedf4f27d99262e58ad92cc095c58 https://www.encodeproject.org/files/ENCFF579AZI/@@download/ENCFF579AZI.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF448KKT bigBed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF913IWS 7138564 ENCODE Processing Pipeline 6473e4de425b03f4036a476fce0dd162 https://www.encodeproject.org/files/ENCFF448KKT/@@download/ENCFF448KKT.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF579XZH bigBed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF992KFM 5933051 ENCODE Processing Pipeline 7e02992d471599026ff37cec2ec2a7e4 https://www.encodeproject.org/files/ENCFF579XZH/@@download/ENCFF579XZH.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF399LDB bigWig signal p-value ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF797XUR 732730024 ENCODE Processing Pipeline 1ce588579a5c7e5f31b15b9b6b681cd1 https://www.encodeproject.org/files/ENCFF399LDB/@@download/ENCFF399LDB.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF375JFQ bigWig signal p-value ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XMC, ENCFF087UEM, ENCFF478WUL 925074581 ENCODE Processing Pipeline dba47c06b09dc8c6a96225a6b0bb2a29 https://www.encodeproject.org/files/ENCFF375JFQ/@@download/ENCFF375JFQ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF981VPJ bigWig signal p-value ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XMC, ENCFF087UEM, ENCFF478WUL, ENCFF797XUR 1327805413 ENCODE Processing Pipeline b9b39fe5ac49eda2b32131e985267cb7 https://www.encodeproject.org/files/ENCFF981VPJ/@@download/ENCFF981VPJ.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF979TDN bigWig fold change over control ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF087UEM, ENCFF478WUL, ENCFF797XUR 1007664109 ENCODE Processing Pipeline 856e2191b41407023237d3ef0eb3068e https://www.encodeproject.org/files/ENCFF979TDN/@@download/ENCFF979TDN.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF354BFD bigWig fold change over control ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF037XMC, ENCFF087UEM, ENCFF478WUL 1007037683 ENCODE Processing Pipeline 4ae28c44b78c69dd6c27db77d77f9a26 https://www.encodeproject.org/files/ENCFF354BFD/@@download/ENCFF354BFD.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF585EFA bigWig fold change over control ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF037XMC, ENCFF087UEM, ENCFF478WUL, ENCFF797XUR 1536115274 ENCODE Processing Pipeline 954c07196c1be3648ace77c5918cfa87 https://www.encodeproject.org/files/ENCFF585EFA/@@download/ENCFF585EFA.bigWig mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF637XUL bigBed narrowPeak replicated peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF705DBW 5304207 ENCODE Processing Pipeline ad40d7f0cf776a6f863ed9f92676c244 https://www.encodeproject.org/files/ENCFF637XUL/@@download/ENCFF637XUL.bigBed mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF705DBW bed narrowPeak replicated peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF705GPW, ENCFF913IWS, ENCFF992KFM 2417441 ENCODE Processing Pipeline 66ecbbf770db2b1cee7438580c29ecdc https://www.encodeproject.org/files/ENCFF705DBW/@@download/ENCFF705DBW.bed.gz mm10-minimal archived inconsistent platforms sequencing runs labeled as technical replicates ENCFF079RGC bam unfiltered alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF461IFM, ENCFF918OCJ 3499221882 ENCODE Processing Pipeline 30a3645aa737275825b67d38204ed779 https://www.encodeproject.org/files/ENCFF079RGC/@@download/ENCFF079RGC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF719HFE bam unfiltered alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF927ZWX 3866689892 ENCODE Processing Pipeline da0c50c74b930b19d98dca45259efca4 https://www.encodeproject.org/files/ENCFF719HFE/@@download/ENCFF719HFE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF176CBY bam alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF461IFM, ENCFF918OCJ 2661607560 ENCODE Processing Pipeline 762b797279b339120b63967fd23a959a https://www.encodeproject.org/files/ENCFF176CBY/@@download/ENCFF176CBY.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF891TRS bam alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF927ZWX 2883811162 ENCODE Processing Pipeline 411ac761ce5c427bea09fe8508fa6296 https://www.encodeproject.org/files/ENCFF891TRS/@@download/ENCFF891TRS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF497RJD bed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF176CBY, ENCFF556BOJ, ENCFF708TTS, ENCFF891TRS 3658199 ENCODE Processing Pipeline 4f1fd5ffb5ced6cd781f2c91bac8d64e https://www.encodeproject.org/files/ENCFF497RJD/@@download/ENCFF497RJD.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF154LPQ bigBed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF683SLN 6610514 ENCODE Processing Pipeline 42eb98d8251b305acb19c6dabd0fdf66 https://www.encodeproject.org/files/ENCFF154LPQ/@@download/ENCFF154LPQ.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF527HYU bigBed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF497RJD 9483615 ENCODE Processing Pipeline f7a77ff13bcf4039b7333416d7665fd5 https://www.encodeproject.org/files/ENCFF527HYU/@@download/ENCFF527HYU.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF683SLN bed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF708TTS, ENCFF891TRS 3232921 ENCODE Processing Pipeline b181f3db194aaa07c86a3eb777670586 https://www.encodeproject.org/files/ENCFF683SLN/@@download/ENCFF683SLN.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF983GOG bed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF176CBY, ENCFF708TTS 2895462 ENCODE Processing Pipeline 685d47a43a64b0eaa453a75a22002f56 https://www.encodeproject.org/files/ENCFF983GOG/@@download/ENCFF983GOG.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF555UPM bigBed narrowPeak peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF983GOG 5900856 ENCODE Processing Pipeline 90a3e6de3ddcda90368938e19cf21dcf https://www.encodeproject.org/files/ENCFF555UPM/@@download/ENCFF555UPM.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF575IWX bigWig signal p-value ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF708TTS, ENCFF891TRS 1220512702 ENCODE Processing Pipeline 247ecf60b6dea528c0e91be9083e471d https://www.encodeproject.org/files/ENCFF575IWX/@@download/ENCFF575IWX.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF135YUE bigWig signal p-value ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF176CBY, ENCFF708TTS 726332656 ENCODE Processing Pipeline da1ceed15f962b1211a8ab1d6cbf9c9f https://www.encodeproject.org/files/ENCFF135YUE/@@download/ENCFF135YUE.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF748QCV bigWig signal p-value ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF176CBY, ENCFF556BOJ, ENCFF708TTS, ENCFF891TRS 1474717621 ENCODE Processing Pipeline 5ee5e62de6801c916b23e5a1528fe217 https://www.encodeproject.org/files/ENCFF748QCV/@@download/ENCFF748QCV.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF706OIK bigWig fold change over control ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF556BOJ, ENCFF708TTS, ENCFF891TRS 1171616294 ENCODE Processing Pipeline dbe8d2619404ab5e980498bc5f11bc46 https://www.encodeproject.org/files/ENCFF706OIK/@@download/ENCFF706OIK.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF104FFC bigWig fold change over control ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF176CBY, ENCFF708TTS 911470282 ENCODE Processing Pipeline e3b73dad86febeabb157d6a1a17f3e1d https://www.encodeproject.org/files/ENCFF104FFC/@@download/ENCFF104FFC.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF633MDI bigWig fold change over control ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF176CBY, ENCFF556BOJ, ENCFF708TTS, ENCFF891TRS 1660438136 ENCODE Processing Pipeline 98618470424b31e1898524eed1ad01f3 https://www.encodeproject.org/files/ENCFF633MDI/@@download/ENCFF633MDI.bigWig mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF067ZBV bed narrowPeak replicated peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF497RJD, ENCFF683SLN, ENCFF983GOG 2479680 ENCODE Processing Pipeline d2eef4d7f2243a312e7428b93908f5a2 https://www.encodeproject.org/files/ENCFF067ZBV/@@download/ENCFF067ZBV.bed.gz mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF897XJA bigBed narrowPeak replicated peaks ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1, 2 ENCFF067ZBV 5246172 ENCODE Processing Pipeline e983086f920150a2a59cd3b9d6caa5db https://www.encodeproject.org/files/ENCFF897XJA/@@download/ENCFF897XJA.bigBed mm10 released inconsistent platforms sequencing runs labeled as technical replicates